HHsearch alignment for GI: 254781101 and conserved domain: pfam08245
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=100.00 E-value=2.3e-42 Score=299.51 Aligned_cols=186 Identities=36% Similarity=0.470 Sum_probs=167.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCC-CCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 830365420123346777752011222122110145741000123-2214443015664433211212232322025553
Q gi|254781101|r 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472)
Q Consensus 113 ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~-~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472)
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~P~iaviTN 79 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGE-GRLEGLAKPDIAVITN 79 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHCCCCCCCEEEEEC
T ss_conf 937586899999999999838998998388474577999997666469968999832777107-6552777899999945
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12101234445788886543310376221012101342468998752012333332222222222222344211346510
Q gi|254781101|r 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 (472)
Q Consensus 192 I~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~ 271 (472)
T Consensus 80 i~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~~----~~~~t~g~~~~~d~~~~~i~~~~~~~~ 155 (188)
T pfam08245 80 ISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNAG----AKVITFGLENEADDRAANIYVSSEGGK 155 (188)
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC----CCEEEEECCCCCCEEEEEEEECCCCCE
T ss_conf 7655646621799999999999972999999999898888999998669----846998568765604467899589968
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 012-45654322122222222333322103567
Q gi|254781101|r 272 MEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 (472)
Q Consensus 272 ~~~-~~~~~~~~~~l~~~G~hnv~NalaAia~~ 303 (472)
T Consensus 156 ~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 156 IVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred EEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 999962993899998866399999999999959