HHsearch results for GI: 254781101 and protein with PDBid: 1j6u_A
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=356.00 Aligned_cols=382 Identities=16% Similarity=0.124 Sum_probs=250.3
Q ss_pred EECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 40222378988897168874768889999986988999855212455446972899599899999999999830699399
Q gi|254781101|r 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 (472)
Q Consensus 32 ~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI 111 (472)
.|+..+...|++|-=+|-.. .|..+..|.++|.. ++. + .+. ++.. ....+.++|
T Consensus 64 ~~~~~~~~~d~vV~SpgI~~-~~p~l~~a~~~gi~------------------v~~--~-~e~---~~~~-~~~~~~~~I 117 (469)
T 1j6u_A 64 HSADNWYDPDLVIKTPAVRD-DNPEIVRARMERVP------------------IEN--R-LHY---FRDT-LKREKKEEF 117 (469)
T ss_dssp CCTTSCCCCSEEEECTTCCT-TCHHHHHHHHTTCC------------------EEE--H-HHH---HHHH-HHHHCCCEE
T ss_pred CCHHHCCCCCEEEECCCCCC-CCHHHHHHHHCCCC------------------EEE--H-HHH---HHHH-HHHCCCCEE
T ss_conf 89788799989998896898-88999999985996------------------871--9-999---9987-764667679
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 98303654201233467777520112221221101457410001232214443015664433211212232322025553
Q gi|254781101|r 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472)
Q Consensus 112 ~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472)
|||||||||||++|++++|+..+.... ++++.++.++.........+++|+|++..+ .+...++|+++||||
T Consensus 118 aITGTnGKTTTt~ml~~iL~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~-----~~~~~~~p~iavitN 189 (469)
T 1j6u_A 118 AVTGTDGKTTTTAMVAHVLKHLRKSPT---VFLGGIMDSLEHGNYEKGNGPVVYELDESE-----EFFSEFSPNYLIITN 189 (469)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTCCCE---EECSSCCTTSTTSSEECCSSCEEEEECTTS-----GGGGGCCCSEEEECC
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCE---EECCCCCCCCCCHHCCCCCCEEEEECCCCC-----CCCCEECCCEEEEEC
T ss_conf 996899614699999998605454541---203765564210000369960799644321-----211000688899806
Q ss_pred ECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1210123444-578888654331037622101210134246899875201233333222222222222234421134651
Q gi|254781101|r 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 (472)
Q Consensus 192 I~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~ 270 (472)
|++||||+|+ +++.|...|..++.+ ....++|.||+....+...... ...................
T Consensus 190 I~~DHld~~~~~~~~~~~~~~~i~~~---~~~~~~~~dd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 256 (469)
T 1j6u_A 190 ARGDHLENYGNSLTRYRSAFEKISRN---TDLVVTFAEDELTSHLGDVTFG----------VKKGTYTLEMRSASRAEQK 256 (469)
T ss_dssp CCCCCGGGGTTCHHHHHHHHHHHHHT---CSEEEEETTCTTTGGGCSEEEC----------SSSSSEEEEEEEECSSCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHCCCC----------CCCCCCCCCCCCCCCCCCC
T ss_conf 73653244242268899999987516---8811541220556555430222----------2234311122112234540
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCC
Q ss_conf 00124565432212222222233332210356765101210345543114766443310100036531133100025653
Q gi|254781101|r 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 (472)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP 350 (472)
.+..........+.++++|.||++|+++|+++|..+|++.+.|.++|++|++++||+|.+.. .+..+++|+|| |++||
T Consensus 257 ~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi~~~~i~~~l~~f~gv~~R~e~v~~-~~~~~i~vidD-YAHnP 334 (469)
T 1j6u_A 257 AMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFH-DPETNIYVIDD-YAHTP 334 (469)
T ss_dssp EEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEE-ETTTTEEEEEE-CCCSH
T ss_pred EEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCEEEEE-CCCCH
T ss_conf 47750586202557720138889889999999998299999999887504787884479986-28888346640-46898
Q ss_pred CCHHHHHHHHHHHHHCCCCCCE-EEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CC------CHHHHHHHC
Q ss_conf 2101257778741110268713-88512354171058999999999986499899998-----80------389899851
Q gi|254781101|r 351 ASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GF------HVLALKDAL 418 (472)
Q Consensus 351 ~S~~aal~~l~~~~~~~~~r~i-~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~-----G~------~~~~~~~~~ 418 (472)
+|++++|++++.+.+ +|++ +|++ +. .+.+..+.+.++.. +. ..+|.|++. +| ..+.+.+.+
T Consensus 335 ~ai~a~l~~l~~~~~---~~~ii~vf~-~~-~~~r~~~~~~~~~~-a~-~~aD~vilt~~~~~~E~~~~~~~~~~i~~~l 407 (469)
T 1j6u_A 335 DEIRNLLQTAKEVFE---NEKIVVIFQ-PH-RYSRLEREDGNFAK-AL-QLADEVVVTEVYDAFEEKKNGISGKMIWDSL 407 (469)
T ss_dssp HHHHHHHHHHHHHCS---SSEEEEEEC-CB-C--------CHHHH-HH-TTSSEEEECCCBC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEE-CC-CCCCHHHHHHHHHH-HH-HCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999997658---982899997-98-88646777899999-99-7099999999889988754587899999999
Q ss_pred CC-CCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 13-79799978989999999984478989999--7713254899999999850577
Q gi|254781101|r 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEFPAI 471 (472)
Q Consensus 419 ~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGSr~~~le~iv~~L~~~~~~~ 471 (472)
+. +....++++.+++.+.+ .+.+||+||+ |||......++++.+++.+.+.
T Consensus 408 ~~~~~~~~~~~~~~~i~~~l--~~~~gDiVL~~GaGdi~~~~~~~~e~~~~~~~~~ 461 (469)
T 1j6u_A 408 KSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDIIYSSRRFVERYQSSKSSP 461 (469)
T ss_dssp HHTTCCEEECCSGGGHHHHC--CCCSSEEEEEECSSTHHHHHHHHHHHHHHHC---
T ss_pred HHCCCCEEECCCHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 84699859809999999998--5799799999569998999999999999751873