HHsearch results for GI: 254781101 and protein with PDBid: 2am1_A

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00  E-value=0  Score=708.05  Aligned_cols=444  Identities=29%  Similarity=0.417  Sum_probs=384.7

Q ss_pred             CCCCCCHHHHHHHHCCEE-ECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             954356788998727999-5268871474677402223789888971688747688899999869889998552124554
Q gi|254781101|r    1 MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG   79 (472)
Q Consensus         1 m~~~~~~~~l~~~~~g~~-~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~   79 (472)
                      |+ | ++.||+++++|+. +...+|..|++|++|||+|+||++|||++|++ |||+||++|+++||+++|++++.     
T Consensus         1 m~-~-~l~~i~~~~~~~~~~~~~~d~~i~~i~~dSr~v~~g~lFva~kG~~-dG~~yi~~A~~~GA~~vv~~~~~-----   72 (454)
T 2am1_A            1 MK-L-TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV-----   72 (454)
T ss_dssp             CC-C-BHHHHHHHHTCSSCSTTSCCCBCCCEESCGGGCCTTCEECCCBSSS-BGGGGHHHHHHHTCSEEEESSCC-----
T ss_pred             CC-C-CHHHHHHHHCCCCCCCCCCCCEECEEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCCC-----
T ss_conf             95-6-2999999868866677677831665995087279998899947884-07999999998799899988747-----


Q ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCC
Q ss_conf             46972899599899999999999830699399983036542012334677775201122212211014574100012322
Q gi|254781101|r   80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD  159 (472)
Q Consensus        80 ~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~  159 (472)
                       .++|+|.|+|+++||+.||+++|.+++.++||||||||||||++|++++|+..+.++.++||+|+.+|+|++++.++++
T Consensus        73 -~~~p~i~V~d~~~al~~la~~~~~~~~~~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~gn~~~~~g~~~~~~~~~~~  151 (454)
T 2am1_A           73 -SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEG  151 (454)
T ss_dssp             -CSSCEEECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHHTCCTT
T ss_pred             -CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHCCCC
T ss_conf             -8999999898999999999999708898589994258877320278998776167333168768776737888734221


Q ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHC
Q ss_conf             14443015664433211212232322025553121012344457888865433103762210121013424689987520
Q gi|254781101|r  160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS  239 (472)
Q Consensus       160 ~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~  239 (472)
                      ++++|+|+|++++|++..++.+++|+++|||||++||||+|+|+|+|+++|++||+.+++++.++.|. |+........ 
T Consensus       152 ~~~~v~E~~~~~~~~~~~l~~~~~p~iaviTNI~~dHld~~~s~e~y~~~K~~lf~~~~~~~~vi~~d-d~~~~~~~~~-  229 (454)
T 2am1_A          152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA-DPIVEDYLPI-  229 (454)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEES-CGGGGGGCCS-
T ss_pred             HHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECCC-CHHHHHHHHH-
T ss_conf             03678886035421378872567996899908866765541006899998888873467545220267-7899998753-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             12333332222222222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r  240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV  319 (472)
Q Consensus       240 ~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~  319 (472)
                         . ....+++  ...++.........  ..+.+........+.++++|.||++|+++|++++..+|++.+.+.++|.+
T Consensus       230 ---~-~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~nv~N~laAia~~~~lg~~~~~i~~~l~~  301 (454)
T 2am1_A          230 ---D-KKVVRFG--QGAELEITDLVERK--DSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQH  301 (454)
T ss_dssp             ---S-SEEEEES--TTSSBCEEEEEECS--SCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHGGG
T ss_pred             ---C-CCCCCCC--CCCCEEHHHHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCC
T ss_conf             ---0-2332004--56420013322034--55421245432343335566789999999999998733531221200124


Q ss_pred             CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r  320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY  399 (472)
Q Consensus       320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~  399 (472)
                      |++++||++...   ..++.++|||||||||+||+++|++++.++....+|+|+|+|+|.|||++++++|+++++.++..
T Consensus       302 ~~~~~~R~e~~~---~~~~~~iidDsya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~  378 (454)
T 2am1_A          302 LELTRNRTEWKK---AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPD  378 (454)
T ss_dssp             CCCCCCCSCEEC---CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTT
T ss_pred             CCCCCCCCEEEE---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf             566553001687---37992686562369999999999999863320378669997862001535899999999999982


Q ss_pred             CCCEEEEECCCHHHHHHHCCC---CCCEE------EECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             998999988038989985113---79799------97898999999998447898999977132548999999998
Q gi|254781101|r  400 NISHVWLSGFHVLALKDALPR---SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE  466 (472)
Q Consensus       400 ~~d~v~~~G~~~~~~~~~~~~---~~~~~------~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~  466 (472)
                      .+|.|+++|++...+.+....   .....      .+++++++++.+.+.+++||+|||||||+++||++++.|++
T Consensus       379 ~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~gDvVLiKGSr~~~le~iv~~Lkn  454 (454)
T 2am1_A          379 VLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLEN  454 (454)
T ss_dssp             TCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEESSCCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             9989999798889999999862243541145530212789999999996379999899983754009999998449