HHsearch results for GI: 254781101 and protein with PDBid: 2wtz_A

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=530.45  Aligned_cols=430  Identities=18%  Similarity=0.231  Sum_probs=328.6

Q ss_pred             CCCCHHHHHHHHCCEEECC------CCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             4356788998727999526------8871474677402223789888971688747688899999869889998552124
Q gi|254781101|r    3 PLWTFHDLLQAIQGHSIGI------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA   76 (472)
Q Consensus         3 ~~~~~~~l~~~~~g~~~~~------~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~   76 (472)
                      |+ .+.+|++.+++.+..+      .+|..|+||++|||+|+||+|||||+|+++|||+|+.+|+++||+++|++.....
T Consensus        33 ~~-~l~~~~~~~~~~~~~~~~~~~~~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~  111 (535)
T 2wtz_A           33 GV-RLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVA  111 (535)
T ss_dssp             CC-BHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHH
T ss_pred             CC-CHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             84-79999998376223687666789997066899607747999889990348789899999999869989998674310


Q ss_pred             -CCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCC---C
Q ss_conf             -55446972899599899999999999830--69939998303654201233467777520112221221101457---4
Q gi|254781101|r   77 -SIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---P  150 (472)
Q Consensus        77 -~~~~~~~~~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGv---p  150 (472)
                       .....++|+|.|+|++++|++||+++|.+  .+.++||||||||||||++|++++|+..|.++.+.+|+|+..+.   +
T Consensus       112 ~~~~~~~~p~i~v~d~~~aL~~la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~  191 (535)
T 2wtz_A          112 EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLP  191 (535)
T ss_dssp             HHCSCCSSCEEECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEEC
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf             01466786099989899999999999864810078199996999889999999999985397401247731230375115


Q ss_pred             CHHCC-------------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             10001-------------23221444301566443321121223232202555312101234445788886543310376
Q gi|254781101|r  151 LTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL  217 (472)
Q Consensus       151 ltll~-------------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l  217 (472)
                      ..+..             .+.+....++|++.  .+........+.|+++++|||+.+|+++|+++|+|+.+|.+||+..
T Consensus       192 ~~~t~~~~~~l~~~~~~~~e~g~~~~~~e~~~--~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~  269 (535)
T 2wtz_A          192 SALTTPEAPTLQAMLAAMVERGVDTVVMEVSS--HALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPD  269 (535)
T ss_dssp             CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH--HHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECH--HHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             56788541566766666650698658997121--1677524333564089996562788652375676544433211002


Q ss_pred             C--CCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             2--2101210134246899875201233333222222222222234421134-651001-24565432212222222233
Q gi|254781101|r  218 E--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME-VQLQGKSMEVVHHGIGYHMA  293 (472)
Q Consensus       218 ~--~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~-~~~~~~-~~~~~~~~~~~l~~~G~hnv  293 (472)
                      .  ..+.+|+|.||+....+.......    ...++.....+++..+..... .+..+. ....+..+++.++++|.||+
T Consensus       270 ~~~~~~~~v~n~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv  345 (535)
T 2wtz_A          270 SALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNV  345 (535)
T ss_dssp             STTCCSEEEEECSSHHHHHHHHHHSSC----EEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHH
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHCCCC----CEEECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHH
T ss_conf             444575389925508899997630344----1122146630023332022235761122035543102443225672157


Q ss_pred             CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             33221035676510121034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r  294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA  373 (472)
Q Consensus       294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~  373 (472)
                      +|+++|++++..+|++.++|.++|.+|+ ++||++++.   ..++..++ |+||+||+++.+++.++..    ..+|+++
T Consensus       346 ~NalaAia~a~~lgi~~~~i~~~L~~~~-~~gR~e~i~---~~~~~~i~-~dya~np~~~~~~l~~~~~----~~~r~~~  416 (535)
T 2wtz_A          346 ANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID---RGQGFLAL-VDYAHKPEALRSVLTTLAH----PDRRLAV  416 (535)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECC---SSCSSEEE-EECCCSHHHHHHHHHTTCC----SSSCEEE
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCEEEEE---ECCCCEEE-EECCCCHHHHHHHHHHHHH----HCCCCEE
T ss_conf             7799999999874999999999998699-867389998---51896899-9679996999999999764----1599679


Q ss_pred             EECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CHHHH----HHHCC---CCCCEEEECCHHHHHHHHHHHC
Q ss_conf             851235417105899999999998649989999880-----38989----98511---3797999789899999999844
Q gi|254781101|r  374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLAL----KDALP---RSIHVHYSETMDGLFLFIQSSL  441 (472)
Q Consensus       374 VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~-----~~~~~----~~~~~---~~~~~~~~~~~e~a~~~l~~~~  441 (472)
                      |+|.|   |++....|.++++.+... .|.|++.++     ....+    .....   ...++.+++++++|++.+.+.+
T Consensus       417 Vlg~~---gd~~~~~~~~~~~~a~~~-ad~vi~t~~~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a  492 (535)
T 2wtz_A          417 VFGAG---GDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWA  492 (535)
T ss_dssp             EECCC---TTSCGGGHHHHHHHHHHH-CSEEEECCSCCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHC
T ss_pred             EECCC---CCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC
T ss_conf             97877---887577899999999962-99999998776757989999999987897479988899599999999999838


Q ss_pred             CCCCEEEEECC
Q ss_conf             78989999771
Q gi|254781101|r  442 VDGDVVVVKSS  452 (472)
Q Consensus       442 ~~gdiVLiKGS  452 (472)
                      ++||+|||||+
T Consensus       493 ~~gDvVLv~G~  503 (535)
T 2wtz_A          493 RPGDVVLIAGK  503 (535)
T ss_dssp             CTTCEEEEESC
T ss_pred             CCCCEEEECCC
T ss_conf             99999998378