HHsearch results for GI: 254781101 and protein with PDBid: 2wtz_A
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=530.45 Aligned_cols=430 Identities=18% Similarity=0.231 Sum_probs=328.6
Q ss_pred CCCCHHHHHHHHCCEEECC------CCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 4356788998727999526------8871474677402223789888971688747688899999869889998552124
Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGI------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 (472)
Q Consensus 3 ~~~~~~~l~~~~~g~~~~~------~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~ 76 (472)
|+ .+.+|++.+++.+..+ .+|..|+||++|||+|+||+|||||+|+++|||+|+.+|+++||+++|++.....
T Consensus 33 ~~-~l~~~~~~~~~~~~~~~~~~~~~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~ 111 (535)
T 2wtz_A 33 GV-RLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVA 111 (535)
T ss_dssp CC-BHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHH
T ss_pred CC-CHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 84-79999998376223687666789997066899607747999889990348789899999999869989998674310
Q ss_pred -CCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCC---C
Q ss_conf -55446972899599899999999999830--69939998303654201233467777520112221221101457---4
Q gi|254781101|r 77 -SIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---P 150 (472)
Q Consensus 77 -~~~~~~~~~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGv---p 150 (472)
.....++|+|.|+|++++|++||+++|.+ .+.++||||||||||||++|++++|+..|.++.+.+|+|+..+. +
T Consensus 112 ~~~~~~~~p~i~v~d~~~aL~~la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~ 191 (535)
T 2wtz_A 112 EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLP 191 (535)
T ss_dssp HHCSCCSSCEEECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEEC
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf 01466786099989899999999999864810078199996999889999999999985397401247731230375115
Q ss_pred CHHCC-------------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10001-------------23221444301566443321121223232202555312101234445788886543310376
Q gi|254781101|r 151 LTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 (472)
Q Consensus 151 ltll~-------------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l 217 (472)
..+.. .+.+....++|++. .+........+.|+++++|||+.+|+++|+++|+|+.+|.+||+..
T Consensus 192 ~~~t~~~~~~l~~~~~~~~e~g~~~~~~e~~~--~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~ 269 (535)
T 2wtz_A 192 SALTTPEAPTLQAMLAAMVERGVDTVVMEVSS--HALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPD 269 (535)
T ss_dssp CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH--HHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECH--HHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 56788541566766666650698658997121--1677524333564089996562788652375676544433211002
Q ss_pred C--CCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 2--2101210134246899875201233333222222222222234421134-651001-24565432212222222233
Q gi|254781101|r 218 E--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME-VQLQGKSMEVVHHGIGYHMA 293 (472)
Q Consensus 218 ~--~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~-~~~~~~-~~~~~~~~~~~l~~~G~hnv 293 (472)
. ..+.+|+|.||+....+....... ...++.....+++..+..... .+..+. ....+..+++.++++|.||+
T Consensus 270 ~~~~~~~~v~n~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv 345 (535)
T 2wtz_A 270 SALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNV 345 (535)
T ss_dssp STTCCSEEEEECSSHHHHHHHHHHSSC----EEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHH
T ss_pred CCCCCCEEEEECCHHHHHHHHHHCCCC----CEEECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHH
T ss_conf 444575389925508899997630344----1122146630023332022235761122035543102443225672157
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472)
Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472)
+|+++|++++..+|++.++|.++|.+|+ ++||++++. ..++..++ |+||+||+++.+++.++.. ..+|+++
T Consensus 346 ~NalaAia~a~~lgi~~~~i~~~L~~~~-~~gR~e~i~---~~~~~~i~-~dya~np~~~~~~l~~~~~----~~~r~~~ 416 (535)
T 2wtz_A 346 ANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID---RGQGFLAL-VDYAHKPEALRSVLTTLAH----PDRRLAV 416 (535)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECC---SSCSSEEE-EECCCSHHHHHHHHHTTCC----SSSCEEE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCEEEEE---ECCCCEEE-EECCCCHHHHHHHHHHHHH----HCCCCEE
T ss_conf 7799999999874999999999998699-867389998---51896899-9679996999999999764----1599679
Q ss_pred EECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CHHHH----HHHCC---CCCCEEEECCHHHHHHHHHHHC
Q ss_conf 851235417105899999999998649989999880-----38989----98511---3797999789899999999844
Q gi|254781101|r 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLAL----KDALP---RSIHVHYSETMDGLFLFIQSSL 441 (472)
Q Consensus 374 VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~-----~~~~~----~~~~~---~~~~~~~~~~~e~a~~~l~~~~ 441 (472)
|+|.| |++....|.++++.+... .|.|++.++ ....+ ..... ...++.+++++++|++.+.+.+
T Consensus 417 Vlg~~---gd~~~~~~~~~~~~a~~~-ad~vi~t~~~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a 492 (535)
T 2wtz_A 417 VFGAG---GDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWA 492 (535)
T ss_dssp EECCC---TTSCGGGHHHHHHHHHHH-CSEEEECCSCCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHC
T ss_pred EECCC---CCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 97877---887577899999999962-99999998776757989999999987897479988899599999999999838
Q ss_pred CCCCEEEEECC
Q ss_conf 78989999771
Q gi|254781101|r 442 VDGDVVVVKSS 452 (472)
Q Consensus 442 ~~gdiVLiKGS 452 (472)
++||+|||||+
T Consensus 493 ~~gDvVLv~G~ 503 (535)
T 2wtz_A 493 RPGDVVLIAGK 503 (535)
T ss_dssp CTTCEEEEESC
T ss_pred CCCCEEEECCC
T ss_conf 99999998378