HHsearch results for GI: 254781101 and protein with PDBid: 3lk7_A
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=0 Score=447.34 Aligned_cols=404 Identities=19% Similarity=0.206 Sum_probs=307.9
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEC------CHH-HHHHHH--
Q ss_conf 46774022237898889716887476888999998698899985521245544697289959------989-999999--
Q gi|254781101|r 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD------DVL-GALNKL-- 98 (472)
Q Consensus 28 ~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~------d~~-~al~~l-- 98 (472)
+|.+.-.--.+.|..|++..+..+|+|.+++.+.++|+.+++...+. .....++.++++. ++. ++..+.
T Consensus 20 sG~s~a~~l~~~G~~v~~~d~~~~~~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~vv~Sp~I~~~~p~l~~a~~~~i 97 (451)
T 3lk7_A 20 SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNPGIPYNNPMVKKALEKQI 97 (451)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECTTSCTTSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHH--HCCCCCCCEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 99999999997889799997987889978999997899899688978--8177998599989974999999999997799
Q ss_pred -----HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCC
Q ss_conf -----999983069939998303654201233467777520112221221101457410-00123221444301566443
Q gi|254781101|r 99 -----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHL 172 (472)
Q Consensus 99 -----a~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~ 172 (472)
+.+++...+.++||||||||||||++|++++|+..+......|| +|+|.+ +.....+.+++|+|+|..+.
T Consensus 98 ~~~~~~~l~~~~~~~~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~E~s~~~~ 173 (451)
T 3lk7_A 98 PVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN----IGFPASEVVQAANDKDTLVMELSSFQL 173 (451)
T ss_dssp CEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEET----SSSCHHHHTTTCCTTCEEEEECCHHHH
T ss_pred CEEEHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC----CCCCCHHHHHCCCCCCEEEEEECCCCC
T ss_conf 7960999999874086899977778621899999998643344123046----676705442135898789999433210
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 32112122323220255531210123444578888654331037622101210134246899875201233333222222
Q gi|254781101|r 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 (472)
Q Consensus 173 gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~ 252 (472)
+++ ..++|+++|||||++||||+|+|+|+|+++|.++++++++++.+|+|.||++...+...... .+++|+.
T Consensus 174 ~~~----~~~~p~iaviTNI~~dHld~~~s~e~y~~aK~~l~~~~~~~~~~v~n~dd~~~~~l~~~~~~----~~~~~~~ 245 (451)
T 3lk7_A 174 MGV----KEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKA----TIVPFST 245 (451)
T ss_dssp TTC----SSCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEETTSHHHHHHHTTCSS----EEEEEES
T ss_pred CCC----CCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC----CEEEECC
T ss_conf 455----44598699850717776372069889877755343146665653334675899999874177----3898447
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 22222223442113465100124565432212222222233332210356765101210345543114766443310100
Q gi|254781101|r 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 (472)
Q Consensus 253 ~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~ 332 (472)
+.+++...... . .+............++++|.||++|+++|++++..+|++.++|.++|++|++++||||.+.
T Consensus 246 ~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~lGi~~~~i~~~L~~f~~~~gR~e~i~- 318 (451)
T 3lk7_A 246 TEKVDGAYVQD----K--QLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLG- 318 (451)
T ss_dssp SSCCSSEEEET----T--EEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCCTTSSEEEE-
T ss_pred CCCCCCCEEEC----E--EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHEEEE-
T ss_conf 64556324303----0--8997571367652247764445660899999999869999999999985666501315774-
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 03653113310002565321012577787411102687138851235417105899999999998649989999880389
Q gi|254781101|r 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 (472)
Q Consensus 333 ~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~ 412 (472)
..+++++|||+||+||.|+.+||+.+.. ++++++++|.+.|.+..+++.. +. +++.++++|+...
T Consensus 319 --~~~g~~iidD~~~~~~~s~~~al~~~~~-------~~ii~i~gg~~~~~~~~~l~~~----~~--~~~~~ii~g~~~~ 383 (451)
T 3lk7_A 319 --KVHGISFYNDSKSTNILATQKALSGFDN-------TKVILIAGGLDRGNEFDELIPD----IT--GLKHMVVLGESAS 383 (451)
T ss_dssp --EETTEEEEECTTCCSHHHHHHHHHTSCG-------GGEEEEECCSCCSCCCGGGHHH----HT--TCSEEEECSTTHH
T ss_pred --CCCCEEEEECCCCHHHHHHHHHHHHCCC-------CCEEEECCCCCCCCCHHHHHHH----HH--CCCEEEEECCCHH
T ss_conf --1388699956774169999999974778-------8728980785566659999999----86--6988999799989
Q ss_pred HHHHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECC------------CHHHHHHHHHHHHHH
Q ss_conf 89985113-79799978989999999984478989999771------------325489999999985
Q gi|254781101|r 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS------------NSCGFYRLINLLLEE 467 (472)
Q Consensus 413 ~~~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS------------r~~~le~iv~~L~~~ 467 (472)
.+.+.+.. +..+..+.++++|++.+.+.+++||+||++|+ ||..|+++|+.|+.|
T Consensus 384 ~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~~~gDiVLls~a~aSfD~f~nye~RG~~F~~~v~~l~~e 451 (451)
T 3lk7_A 384 RVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFESLRGE 451 (451)
T ss_dssp HHHHHHHHTTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999986699689749999999999985899799997795504212249999999999999985289