HHsearch results for GI: 254781101 and protein with PDBid: 3mvn_A
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.54 E-value=1.8e-14 Score=113.47 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCC
Q ss_conf 51012103455431147664433101000365311331000256532101257778741110268713885123541710
Q gi|254781101|r 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 (472)
Q Consensus 305 ~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~ 384 (472)
.-|++ .+.++|..|+++++|||++. ..+++++||| |++||+|+++++++++.+.+. ++.+++++ +..-+..
T Consensus 8 ~~gid--~~~~~l~~~~g~~RR~E~v~---~~~g~~vidD-yAHnP~~i~a~l~~~~~~~~~--~~~i~~~~-~~~~~~~ 78 (163)
T 3mvn_A 8 SSGVD--LGTENLYFQSNAQRRLEVKG---VVNNITVYDD-FAHHPTAITATIDALRAKVGQ--QRILAVLE-PRSNTMK 78 (163)
T ss_dssp ---------------------CCEEEE---EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTT--SCEEEEEC-CC-----
T ss_pred CCCHH--HHHHHHHHCCCCCCCEEEEE---ECCCCEEEEE-CCCCHHHHHHHHHHHHHHCCC--CEEEEEEC-CCCCHHH
T ss_conf 22548--99988875789763549997---2599489996-899989999999999862366--53884202-2331144
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHH--HHHHHC-CCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
Q ss_conf 5899999999998649989999880389--899851-1379799978989999999984478989999771325489999
Q gi|254781101|r 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 (472)
Q Consensus 385 ~~~~h~~i~~~~~~~~~d~v~~~G~~~~--~~~~~~-~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv 461 (472)
......+...... ..+.+++..+... ...+.. ....+..++++.+++++.+.+.+++||+||+.|+.+ +..+.
T Consensus 79 ~~~~~~e~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~l~~~a~~gDvVL~~G~G~--~~~~~ 154 (163)
T 3mvn_A 79 MGVHKHELATSLQ--DADSVFIYQPPTIEWQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGA--FGGIH 154 (163)
T ss_dssp ----CHHHHHHHT--TCSEEEEECC----CCHHHHHTTCCSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSC--GGGHH
T ss_pred HHHHHHHHHHHHH--CCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHH
T ss_conf 6766999999851--3779998278541143688987504682996589999999998679969999984997--88999
Q ss_pred HHHHHHC
Q ss_conf 9999850
Q gi|254781101|r 462 NLLLEEF 468 (472)
Q Consensus 462 ~~L~~~~ 468 (472)
+.|.+.+
T Consensus 155 ~~i~~~L 161 (163)
T 3mvn_A 155 QKLLTAL 161 (163)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999984