BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] (472 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/472 (100%), Positives = 472/472 (100%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA Sbjct: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT Sbjct: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 >gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/472 (75%), Positives = 408/472 (86%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA Sbjct: 1 MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT Sbjct: 61 VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML +ALSS K + I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LGI +Y+FG+S +ADF+L +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L YNISHVWLSG HVLALK+ALP+ Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +HVHY E +D LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF IQ Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472 >gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 477 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/469 (52%), Positives = 330/469 (70%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIAP EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RPH+A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GRRIAVLGDM EMGE +Q H DL L I HVWL+G + ALK++LP Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 >gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ + G G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L++V+ + ++G L++P+ V+DVL AL +L +A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R + G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 >gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 477 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRS P AFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMG+ +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 >gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] Length = 486 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 240/475 (50%), Positives = 327/475 (68%), Gaps = 6/475 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V++ + ++G L++P VDDVL AL +L VAAR R++A IIA+TGSVGKT Sbjct: 60 MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H EIR L Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V PH+A+ITTIAPAHL NF I EIA+AKAEIF+G+ G + LN D+ FE L+ + Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ ++SFG+ AD +L ++ E S + + + G++MEV G H+A+N L L Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V ++ AD+D AI AL+ ++GRG+R++ + G+FTLIDESYNANPASM+AAI++L Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + SP GRRIAVLGDM EMG+ +Q H +LA L I +VWL+G + AL+ Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 DALP S++V Y E + L F+ +S+ GDV++VKSS GF +++ LL++FPA Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPA 474 >gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CNPAF512] Length = 479 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 244/472 (51%), Positives = 330/472 (69%), Gaps = 3/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIA EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAIS 358 G+V I+ AD++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI+ Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ P G GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++L Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 P S+HV Y E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 471 >gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652] gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CIAT 652] Length = 470 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/463 (51%), Positives = 323/463 (69%), Gaps = 3/463 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP +AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 462 >gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] Length = 470 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 237/461 (51%), Positives = 321/461 (69%), Gaps = 3/461 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ VDDVL AL +L A+R RS A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP++AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 E L ++ +S+ GDV++VKSS GF +++ LL++F Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKF 460 >gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] Length = 477 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 237/470 (50%), Positives = 315/470 (67%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT D++ G +G +P G + GISIDSR++ EAFFAIKG DGHD+ A Sbjct: 1 MNWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAGL+VV + ++G L++P+ V+DVL AL KLA+AAR R+ A IIA+TGSVGKT Sbjct: 60 VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIAPAHL NF IEEIASAKAEIFEGLE G + LN D++ FE L+ + Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ I +FG+ ADF+L ++ S S + L G++ E+ + G H+A N + L Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V++ A++D A + L +GRG+R+R + G F LIDESYNANPASM+AAI+VL Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G GRR+AVLGDM EMGE S H +LA L I HVWL+G + AL+DALP Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 S+ V + T L F + GD ++VKSS GF +++ LL+++PA Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469 >gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] Length = 477 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/472 (51%), Positives = 318/472 (67%), Gaps = 1/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT DL+ A+ G +G +P G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA L+VVN + ++G L++P+ VDDVL AL +LA+AAR RS+A I+A+TGSVGKT Sbjct: 60 VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ + +A + S+NNH GVPLTLARMP +G+FE+GM+H GEI L Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+ G + LN+D+ +FE L+ K+ Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI I+SFG+ A+F+L ++ +E S + G++ EVV G H+A+N + L Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +L AD+D A+ ALS P +GRG+R+R G FTLIDESYNANPASM+AAI+VL Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GEG RIAVLGDM EMGE S+ H DLA L I HVWL+G + AL+ LP Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 ++ V T + L F +S+ GDVV+VKSS GF +++ LL+ +P + Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPLD 471 >gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] Length = 477 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 233/470 (49%), Positives = 318/470 (67%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ G +G +P G + GISIDSR++ EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA L+VV + ++G L++P+ V+DVL AL KLA+AAR R+ A IIA+TGSVGKT Sbjct: 60 VANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIAPAHL NF IEEIA+AKAEIFEG+E+ G++ LN D++ FE L+ + Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ I +FG+ ADF+L ++ + S + L G++ E+ + G H+A N + L Sbjct: 240 EAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V++ A++D A++AL +GRG+R+ +N G F LIDESYNANPASM+AAI+VL Sbjct: 300 GAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G GRR+AVLGDM EMGE S H +LA L I HVWL+G + AL+DALP Sbjct: 360 AETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPD 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 S+ V + T L F + GD ++VKSS GF +++ LL+++PA Sbjct: 420 SVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469 >gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] Length = 476 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/471 (47%), Positives = 311/471 (66%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +D+++A++G G +P G + GISIDSRS+ P EAFFAIKG +DGHDF+ A+ Sbjct: 5 LWTSNDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL KL +A+R RSKA IIA+TGSVGKTTTK Sbjct: 64 GAGLLVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H EIR L +VR Sbjct: 124 EALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKMVR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F+ L+ + G Sbjct: 184 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEKAG 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ +D++LR+ K S M V++ G V G+ G H+ QNML LG Sbjct: 244 VEHIATFGENARSDYRLREVKLHPTCSCMTVKI-GTHEAAVKVGMPGRHIVQNMLAVLGA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 303 ADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHS 362 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +P G GRRIAVLGDM E+G S H DLA + ++ +++ G + ALK+ALP Sbjct: 363 TTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNALPVE 422 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDV++VKSS GF +++ L+ +FP ++ Sbjct: 423 IQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKGIGFSKIVKTLISQFPPVE 473 >gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 476 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 222/471 (47%), Positives = 309/471 (65%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW D+++A++G G +P G + GISIDSRS+ P EAFFAIKG +DGHDF+ A+ Sbjct: 5 LWKSDDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL KL +A+R RSKA IIA+TGSVGKTTTK Sbjct: 64 GAGLIVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H EIR L +VR Sbjct: 124 EALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLVKMVR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F+ L+ + G Sbjct: 184 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELAEKAG 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ +D++LR+ K S M V+ G V G+ G H+ QNML LG Sbjct: 244 VEHIVTFGENARSDYRLREVKLHPTCSCMTVK-AGTHEAAVKVGMPGRHIVQNMLAVLGA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 303 ADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHS 362 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +P G GRRIAVLGDM E+G S H DLA + ++ +++ G + ALK+ALP Sbjct: 363 TAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNALFIGGPDMSALKNALPVE 422 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 IH Y ++ D L + ++ GDV++VKSS GF +++ L+ +FP ++ Sbjct: 423 IHTEYRQSTDELLPLVVKTVRPGDVIMVKSSKGIGFSKIVKALISQFPPVE 473 >gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M644/93/1] gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M13/05/1] gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M490/95/1] gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti B1/94] gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella sp. F5/99] gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] Length = 481 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 227/471 (48%), Positives = 307/471 (65%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHLS+F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] Length = 481 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 AGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 DAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. 83/13] gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] Length = 481 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHIVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella neotomae 5K33] gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] Length = 481 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] Length = 481 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar Abortus 2308] gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin Cpn60:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus 2308] gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis M5-90] Length = 481 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] Length = 481 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHL 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] Length = 481 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V G+ G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGMPGRHIVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis bv. 3 str. 686] gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] Length = 481 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] Length = 481 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 224/471 (47%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHIVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP S++AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G + H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I + Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQIEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] Length = 481 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/471 (47%), Positives = 305/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +F ++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFDENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] Length = 477 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+IA EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTCSDLLAAMNGRPVGNLPEGII-GISIDSRTIAKGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A +IA+TGSVGKT Sbjct: 60 LANGASLLVVSEGKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A I S+NNH GVPLTLARMP +FGIFE+GM+H GEIR LT Sbjct: 120 TTKEMLRHVLSPLGRVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEIRPLTA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ K G +N D FELL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELLERAAV 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ I+SFG + ++++L ++ +E S + + G++ EV G H+A+N L + Sbjct: 240 AAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGRHIAENALAVV 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + AD+D + +L+ P++GRG R+R + G TLIDESYNANPASM+AAIS+L Sbjct: 300 AAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIA+LGDM EMGE + + H LAE + I+ VWL+G + L+DALP Sbjct: 360 RAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGITDVWLAGPDIAHLRDALPG 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + E + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHREAVGDLTSYALGAVAAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] Length = 477 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/469 (46%), Positives = 308/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLGAMNGRPVGNLPEG-ITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP D+G+FE+GM+H GEIR LT Sbjct: 120 TTKEMLRHMLSPLGRVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ +++IA+AKAEIFEG+ G +N D + +ELL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ ++ FG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 TAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D +L+ P++GRG R+R + G+ TLIDESYNANPASM+AAI++L Sbjct: 300 AAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASMRAAITLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIA+LGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGTEMAHLRDALPS 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS S G +++ LL+ P Sbjct: 420 EVSVVHRDLVSDLTAYALGAVAAGDVVMVKSSKSTGCAKIVQALLDAHP 468 >gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 481 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 224/471 (47%), Positives = 304/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +V Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVC 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] Length = 481 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 224/471 (47%), Positives = 304/471 (64%), Gaps = 4/471 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTTTK Sbjct: 69 GAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTK 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L +VR Sbjct: 129 EALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKMVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + G Sbjct: 189 PHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEKAG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++ I +FG++ AD++LR K S M V++ G V GI G H+ QNML LG Sbjct: 249 VEHIATFGENARADYRLRDVKLHPTCSCMTVKI-GTHEAAVKVGIPGRHVVQNMLAVLGA 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 308 AHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHS 367 Query: 363 ISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 368 TVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPVE 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ G VV+VKSSN GF +++ L+ +FP ++ Sbjct: 428 IQTEYRQSTDELLPLVVKAVRPGYVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] Length = 477 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/469 (46%), Positives = 307/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP DFG+FE+GM+H GEI LT Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ G +N D + ++LL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ ++SFG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D + + P++GRG R+R + G T+IDESYNANPASM+AAIS+L Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIAVLGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Sinorhizobium meliloti 1021] gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium meliloti 1021] gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] Length = 477 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/469 (46%), Positives = 306/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP DFG+FE+GM+H GEI LT Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ G +N D + ++LL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ ++SFG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D + + P++GRG R+R + G T+IDESYNANPASM+AAIS+L Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIAVLGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT L+ A+ G +G +P+G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MNLLWTSEALVTAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VAAR RS+A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L LS++ K +A S+NNH GVPLTLARMPVD D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEG+E G LN DD+ F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDGAAILNRDDARFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G M G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +++AD+D + AL+ + GRGKR+ G TLIDESYNANPASM AA+++L Sbjct: 300 GAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GEGRRIAVLGDM E+G+ S H LA+++ V+L G + AL +ALP Sbjct: 360 NTTPVAGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMKALAEALPA 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I Y L + ++L GDVV++KSS GF +L++ LL +FPA Sbjct: 420 EIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 469 >gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella schoenbuchensis R1] Length = 473 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/472 (46%), Positives = 298/472 (63%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW LL + G S+G +P+ F +GISIDSRS+ + FF IKG DGHDF A Sbjct: 1 MTVLWDKQTLLSVMNGLSVGCLPETF-SGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGAG++VV + +A + L+ P+ V DVL AL KLA AAR RSKA IIA+TGSVGKT Sbjct: 60 YAKGAGVLVVAQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ + YA +GS+NN GVPLTLARMP D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALGTVGRVYANLGSFNNCWGVPLTLARMPADSDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A+IT IA H+ F +EEIA AKAEIFEGL+ G LN D FF L K+ Sbjct: 180 LVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGLDDEGVALLNADSHFFSRLVQKAE 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S+ A++Q ++ ++ S M + + + V G H+ QN+L L Sbjct: 240 QCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGAPGRHIVQNILGVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + ++ AD+ AL+ F +GRG RYR +L N G F LIDESYNANPASM+AA+ + Sbjct: 300 AVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GR+IA+LGDM E+G S+ H DL + + + + V+L G + L D L Sbjct: 360 LAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFLVGKAMKFLADELS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 I V+YSE ++ L I + +GD++++KSS+S G R++ LL+ + I Sbjct: 420 TYIKVYYSEYIEELLPLILQEISEGDLIMIKSSHSVGLSRIVVALLDRYKKI 471 >gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 477 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/472 (46%), Positives = 301/472 (63%), Gaps = 3/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT ++ +A+ G +G +P G V GISIDSR++ +AFFAIKG +DGHDF A Sbjct: 1 MSLLWTVQEMTEAMDGRPLGNLPDG-VTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV + ++G L+ P+ V+DVL AL L AAR RS+A IIAITGSVGKT Sbjct: 60 IATGAALLVVAEAKLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 ++KEML AL + +A S+NNH GVPLTLARMP +G+FE+GM+H EIR L Sbjct: 120 SSKEMLRRALEPSGEVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIA AHL NF + EIA+AKAEI EG+ K G + LN D+ F LK ++ Sbjct: 180 MVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFSWLKKRAS 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299 L + +FG+ AD++L K ++ S + ++ GK VV G G H+ QN L Sbjct: 240 ELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARI-GKDDVVVKIGAPGRHLVQNALAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG V + AD+ A AL+ ++GRG R+ +++ G F LIDESYNANPASM+AA+ + Sbjct: 299 LGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPASMRAALEL 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L GRRIAVLGDM EMG+ ++ H +LAE + + V LSG + AL+D L Sbjct: 359 LRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSGSEMKALRDELG 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + Y +T D L +++ L DGDVV+VKSS GF R++ LL+++P + Sbjct: 419 NEVETVYRDTADDLADHLKNVLRDGDVVMVKSSLGIGFGRIVKALLDKYPVL 470 >gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 472 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/473 (46%), Positives = 303/473 (64%), Gaps = 4/473 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW +L+ AI G IG +P+ F +G+SIDSR++A + FF IKG H DGHDF L A Sbjct: 1 MTALWNKQELITAIDGVVIGNIPETF-HGVSIDSRALAEGDIFFCIKGHHLDGHDFALQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG+++V + + +S P+ V DVL AL KL AAR RS+A IIAITGSVGKT Sbjct: 60 YARGAGVLIVAEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L++ +A + S NN GVPLTLARMPV+ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQVLATAGNVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT I H+ F +EEIA AKAEIFEGL++ G LN D +FF L K+ Sbjct: 180 LVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGLDEEGIAILNADSAFFSYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+++NAD+Q R + + S M V++ G+ EV G H+ QN L + Sbjct: 240 QCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + D+D+ + +LS F P++GRG RYR +L N G F LIDESYNANPASM+AA+ + Sbjct: 300 AACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359 Query: 360 LSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ P GE GRRIAVLGDM E+GE S+ H DL + + L + V+L G + +L L Sbjct: 360 LAT-GPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDL 418 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + + + + GD++++KSSNS ++ LL+ + A+ Sbjct: 419 SADVKVHYAENIEKILPLLLTEISPGDLLMIKSSNSLCSSNIVTALLDRYKAV 471 >gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] Length = 473 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 213/473 (45%), Positives = 307/473 (64%), Gaps = 4/473 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G++IG +P+ F +GISIDSR++ + FF IKG H DGHDF + A Sbjct: 1 MKALWDKQALITAIDGYAIGEIPETF-SGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA +++V + +A + +S P+ V DVL AL KLA AAR RSKA IIA+TGSVGKT Sbjct: 60 YERGAAVLIVAENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE+L L+++ K +A S NNH GVPLTLARMPV+ ++G+FE+GM+H EIR L Sbjct: 120 TTKEVLKQVLATVGKVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT I+ AH+ F +EEIA AKAEIFEGL++ G LN DD FF L K+ Sbjct: 180 LVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +K I SFG++KN+D+Q + + ++ S M V + G+ + G H+ QN L + Sbjct: 240 QCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + D++ + +LS F P++GRG RYR +L + G F LIDESYNANPASM+AA+ + Sbjct: 300 AACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ I P G EGRRIA+LGDM E+G S+ H DL + + L + V+L G + L L Sbjct: 360 LA-IGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFLFGEAMKFLATDL 418 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + I + + +GD++++KSS+S +++ LL+ + + Sbjct: 419 AAYVKVHYAENIEKILPLILAEISNGDLLMIKSSHSLYSSDIVSALLDRYKVV 471 >gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] Length = 473 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 213/472 (45%), Positives = 298/472 (63%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G +G +P+ F +G+SIDSR++A + FF IKG H DGHDF A Sbjct: 1 MTALWDKKALVAAINGVVMGSMPETF-SGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GAG+++V + + +S P+ V DVL AL KLA AAR RS+A IIAITGSVGKT Sbjct: 60 YERGAGVLIVAEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL+ +A + S NN GVPLTLARMP++ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALAMTGNVHANLASLNNCWGVPLTLARMPIESDYGIFEIGMNHRDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT I H+ F +EEIA AKAEIFEGL++ G LN D FF L K+ Sbjct: 180 LVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGLDEKGIAILNADSDFFSYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+SKNAD+Q R + +++S M V+++ + EV G H+ QN L + Sbjct: 240 KCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + +++ + + F ++GRG RYR +L N G F LIDESYNANPASM+AA+ + Sbjct: 300 AACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ EGRRIA+LGDM E+GE S+ H DL + + L + V+L G + +L L Sbjct: 360 LATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + + + + GD+++VKSSNS ++ LL+ + A+ Sbjct: 420 AGVKVHYAENIEKILSLLLAEISSGDLLMVKSSNSLCSSNIVTALLDRYKAV 471 >gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/470 (47%), Positives = 306/470 (65%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT L+ A+ G +G +P+G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MSLLWTSDALVAAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VAAR RS+A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L LS++ K +A S+NNH GVPLTLARMP + D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEGLE G LN DD F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDGRFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G M G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G ++ AD++ AL+ + GRGKR+ G TLIDESYNANPASM AA+++L Sbjct: 300 GAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GEGRRIAVLGDM E+G+ S H LA+++ V+L G + AL +ALP Sbjct: 360 NATPVTGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMRALAEALPG 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I + Y ++ L + ++L GDVV++KSS GF +L++ LL ++PA Sbjct: 420 DIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKYPA 469 >gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] Length = 503 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/467 (45%), Positives = 287/467 (61%), Gaps = 2/467 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW + A+ +G +P ++GISID+R++ +AFFAI+G +DGHDF+ A + Sbjct: 5 LWDVDAMAAAMHARPLGDLPAA-ISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L VV+ + ++G + P+ VDDVL A+++LA AAR RSKATI+A+TGSVGKTTTK Sbjct: 64 GAALHVVSEQKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L L++ K +A S+NNH GVPL+LAR+P D F IFE+GM+H GEIR L LVR Sbjct: 124 EALRHGLAAEGKVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEIRPLVKLVR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT IAPAHL +F ++EIA AKAEIFEGL GT LN DD L + G Sbjct: 184 PHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPLATMARKAG 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + I +FG+S ADF+L + E S ME + G+++ V G HMAQN+L LG Sbjct: 244 VTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAVLGAA 303 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQ 362 S+ AD+ AL + +GRG R + G LIDESYNANPASM+AA+ VLS Sbjct: 304 SLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALDVLSA 363 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 P GRRIAVLGDM E+G+ + H L E + + V+L+G + AL D L + Sbjct: 364 SRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDEMKALDDVLESRV 423 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + E L + ++ GDVV+VK+S S GF L++ LL +P Sbjct: 424 RREWHENAGELLESLLKTMRTGDVVMVKASKSIGFSPLVDKLLALYP 470 >gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 485 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 222/478 (46%), Positives = 304/478 (63%), Gaps = 9/478 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT L+ A+ G +G +P G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MSLLWTSEALVAAMDGRPLGPMPDG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VA+R RS A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L ++ K +A S+NNH GVPLTLARMP D D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLQAVGKVHASAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEGLE G LN DD+ F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDARFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G + G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY--------RCALNQGFFTLIDESYNANPAS 352 G ++ AD+D AL+ + GRGKR+ + G TLIDESYNANPAS Sbjct: 300 GAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLIDESYNANPAS 359 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+++L+ GEGRRIAVLGDM E+G+ S H LA+++ V+L G + Sbjct: 360 MAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQTVFLGGPEMR 419 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 AL +ALP I Y ++ L + ++L GDVV++KSS GF +L++ LL +FPA Sbjct: 420 ALAEALPADIKTEYRAGVEELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 477 >gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] Length = 473 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/473 (44%), Positives = 294/473 (62%), Gaps = 4/473 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ F GISIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMNGFTVGCLPETF-PGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + + P+ V DVL +L KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S+NN GVPLTLARMP+D D+ IFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSYLLQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S AD+Q ++ ++ S M V L K + + G HM QN L L Sbjct: 240 QFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + AD+ + AL+ F ++GRG Y+ +L N G F LIDESYNANP SM+AA+ + Sbjct: 300 AACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPTSMRAALDL 359 Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ P G GRRIA+LGDM E+G+ S+ H DL + + + + V+L G + L + L Sbjct: 360 LAT-GPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEMKFLANDL 418 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 ++V +SE ++ + + S + +GD++++KSS ++ +L+ + I Sbjct: 419 SSHVNVCHSENIEEILPLVFSEISNGDLIMIKSSRRIYLSNIVTAILDRYKVI 471 >gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ F +G+SIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTVGCLPEIF-SGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + ++ P+ V DVL AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EE+A AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S +AD+Q+++ S M V K M + G HM QN L L Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + AD+ AL F ++GRG Y+ +L N G F LIDESYNANP SM+ A+ + Sbjct: 300 AACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRRIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMGVLASDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + V+++E ++ + + S + +GD++++KSS+ ++ +L + I Sbjct: 420 AYVTVYHAENIEEIVPLVFSEISNGDLIMIKSSHHIYLSNIVAEILNRYKVI 471 >gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mesorhizobium sp. BNC1] gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chelativorans sp. BNC1] Length = 477 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/470 (45%), Positives = 293/470 (62%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT DL+ A+ G G +P+G V GISIDSR++ EAFFAIKG +DGHDF A Sbjct: 1 MTLLWTSDDLVAAVGGRPFGALPEG-VTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAGL+V++ + + ++G L++P V DVL AL LA AAR RS+ +IA+TGS GKT Sbjct: 60 MAAGAGLLVISEEKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML ALSS+ +A S+NNH GVPL+LAR+P DF IFE+GM+H GEI LT Sbjct: 120 TTKEMLRHALSSVGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPLTQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+PHIA++T IA AHL +F ++EIA AK EIF G+ G +N DD F+LL + Sbjct: 180 LVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADMAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ ++ FG++ + F+L + + + S + +++ G+ + G HM QN L + Sbjct: 240 EAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGRHMVQNALSVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G + ADV + AL F + GRGK + + +G FTLIDESYNANPASMKAA+ VL Sbjct: 300 GAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMKAALQVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 GRRIAVLGDM E+G S+ H L ++++ + L+G + AL D P Sbjct: 360 DSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAGTEMKALADNAPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V Y T++ L + L GD ++VKSSN G RL+++LL+ +PA Sbjct: 420 GRLVEYRPTVEELQPLLLELLQPGDAIMVKSSNGIGLSRLVDVLLKNYPA 469 >gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. 1-1C] Length = 472 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/472 (44%), Positives = 288/472 (61%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G +IG +P+ F G+SIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTIGCLPEIF-PGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + ++ P+ V DVL AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S +AD+Q+++ + S M V K M + G HM QN L L Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + AD+ AL F ++GRG Y+ +L N G F LIDESYNANP SM A+ + Sbjct: 300 AACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ G+RIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLVGKEMGVLARDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + V+++E ++ +F + S + +GD++++KSS+ ++ +L + I Sbjct: 420 AYVTVYHAENIEEIFPLVFSEISNGDLIMIKSSHHIYLSNIVTEILNRYKVI 471 >gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR 15-3] Length = 473 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/472 (44%), Positives = 289/472 (61%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ F +GISIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTVGCLPEVF-SGISIDSRTLVEGDVFFCIKGRHLDGHDFATHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + + P+ V DV AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL + K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETAGKVHANLSSLNNCWGVPLTLARMPIDSDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ ++T IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ I SFG+S A++Q ++ S M V L K + + G HM QN L L Sbjct: 240 QCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + A++ + AL F ++GRG Y+ +L N G F LIDESYNANPASM+AA+ + Sbjct: 300 AACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ +GRRIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMRVLASDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 I V++++ ++ +F + S + +GD++++KSS+ ++N +L + I Sbjct: 420 PHITVYHAQDIEEIFPLVFSEISNGDLIMIKSSHRIYLSNIVNEILSRYKVI 471 >gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] Length = 505 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/474 (43%), Positives = 291/474 (61%), Gaps = 10/474 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW L++A++ +G+ G + GISIDSRS+ +AFFAI G +DGHDF+ +A + Sbjct: 5 LWETGVLIEAMRARPVGMDLPGGITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L VV+ + ++G + P+ VDDVL AL +LA AAR RSKA IIA+TGSVGKTTTK Sbjct: 65 GAALHVVSEKRLPALGRMQAPMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTK 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS+ +A + S+NNH GVPL+LAR+P D F IFE+GM+H GEIR L LVR Sbjct: 125 EALRQGLSACGSVHASVASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVR 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH A++T IA AHL +F ++EIA AKAEIFEG+ G+ +N DD+ L A + A G Sbjct: 185 PHAAIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGSAIINADDAKCMRLAAAAKAAG 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG+++ ADF++ ++ +E + + + G+ + V G H AQN L LG Sbjct: 245 VTNVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAA 304 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ +AL+ + +GRG+R++ + G L D+SYNANPASM+AAI L+ Sbjct: 305 HVAGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLAN 364 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 GRRIAVLGDM E+G S + H +LAE L I+ V L G + L +AL Sbjct: 365 AKLSENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARVLLVGEEIKPLAEALGDEE 424 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + H +E + LF S + GD ++VK+S S G +++ L++ +P I Sbjct: 425 IECTTHKTPTEAEEQLF----SDMRAGDAIMVKASRSIGLEKVVAALVDRYPPI 474 >gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] Length = 473 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 204/469 (43%), Positives = 290/469 (61%), Gaps = 2/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G IG +P+ F +GISIDSR++ + FF IKG H DGHDF A Sbjct: 1 MTALWDKQALIAAIDGFVIGCMPETF-SGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG+++V + + + +S P+ V DVL AL KLA AAR RS+A IIAITGSVGKT Sbjct: 60 YARGAGVLIVAENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L+++ K +A + S NN GVPLTLARMPV+ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQVLATVGKVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHADEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ ++T IA H+ F ++ IA AKAEIFEGL++ G LN D+ FF L K+ Sbjct: 180 LVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGLDEEGVALLNADNGFFSYLVRKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+++N+D+Q R + ++ S M V + G+ + G H+ QN L + Sbjct: 240 QCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGRHIVQNSLAVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 ++ D +LS F ++GRG RY+ L N G F LIDESYNANPASM+AA+ + Sbjct: 300 AACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRRIA+LGDM E+G S+ H DL + + + + V+L G + L L Sbjct: 360 LATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFLFGEAMKFLAIDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + V+Y+E ++ + I + + +GD++++KSS S ++ LL+ + Sbjct: 420 AYVKVYYAENIEKILPLIFAEISNGDLLMIKSSRSLYSSDIVTALLDHY 468 >gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] Length = 476 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 202/468 (43%), Positives = 278/468 (59%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +PLWT ++A G G + GISIDSR++ P +AF AI G DGHD+++ A+ Sbjct: 3 DPLWTLDAFVEAAGGRLQGDA-GAEITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAM 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + +V D + + + V VDD L AL K+ VAAR RS A I+A+TGSVGKT Sbjct: 62 EAGASVALVGEDRLPDLPADGRYVV-VDDPLEALRKIGVAARDRSNARIVAVTGSVGKTG 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L + L+ K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI L + Sbjct: 121 TKEALRLTLAESGKVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLVKM 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+ +ITT+ P HL F +E+IA AKAEIF+GLE G LN D+ F+LLK + A Sbjct: 181 VRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLAAA 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ I++FG+ +AD L+K S ++ + G+ + G H +N L L Sbjct: 241 AGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLT 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V L AD+ A AL +GRG+ R + +G F LIDESYNANPASMKAA++VL Sbjct: 301 AVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLG 360 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + GRRIAV+GDM E+G + H +L + ++ NI V+ +G H+ AL LP Sbjct: 361 EAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLPHD 420 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + HY E L + S + GDVV++K S L+ L +E+P Sbjct: 421 LRGHYCEEAKDLEDVLLSDVRSGDVVMIKGSLGTRMGPLVEALKKEYP 468 >gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] Length = 476 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 199/472 (42%), Positives = 277/472 (58%), Gaps = 10/472 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +PLWT + A G + G V + GISIDSR++ P +AF AIKG DGHD++ A+ Sbjct: 3 DPLWTSEVFIDACGGTAKGDV-GAHITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAAL 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFG----VDDVLGALNKLAVAARLRSKATIIAITGSV 117 + GA L +V D S+G L P G VDD L A+ L VAAR R+ A I+A+TGSV Sbjct: 62 EAGASLALVAED---SLGDL--PDDGRYVVVDDPLEAMRALGVAARARTNARIVAVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT TKE L +AL+ K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI Sbjct: 117 GKTGTKEALRLALAPSGKVHASVASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITP 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +VRPH+A+ITT+ H+ F +E+IA AKAEIF GLE G LN D+ ++LL+ Sbjct: 177 LVQMVRPHVAIITTVEAVHIEFFESVEKIAQAKAEIFNGLEPDGVAILNRDNKQYDLLRF 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++ + +FG+ + D L+ + + +E + G+ + G H+ QN L Sbjct: 237 LAATAAVRNVQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSL 296 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L V+ L AD+ AL +GRG++ R ++ G LIDESYNANPASM+AA Sbjct: 297 AVLTAVADLGADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAF 356 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 SVL+Q + G GRRIAV+GDM E+G + H +L + I V+ +G H+ AL D Sbjct: 357 SVLAQATLGGSGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPHMAALWDK 416 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 LP + H+ E L + + GDVV++K S L+ L +E+P Sbjct: 417 LPDDVKAHHREEAKDLIELLLKDVQPGDVVMIKGSLGTRMGPLVEALKKEYP 468 >gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis] gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] Length = 472 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/473 (44%), Positives = 284/473 (60%), Gaps = 5/473 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW LL A+ G +IG +P+ F G+SIDSR++ + FF IK DGHDF A Sbjct: 1 MTVLWDQKILLSAMDGVAIGCLPESF-PGVSIDSRTLVKGDIFFCIKN-RLDGHDFAAQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GAG +V+ + + + LS P+ V DVL AL +LA AR RSKA IIA+TGSVGKT Sbjct: 59 LARGAGALVIAQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L ++ K +A I S+NN GVPLTLA+MP+D D+GIFE+GM+H EIR L Sbjct: 119 TTKEALKKVLQTVGKVHANIASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHKDEIRSLVK 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT IA H+ F +EEIA AKAEIFEGL+ G LN D FF L K+ Sbjct: 179 LVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAE 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +K I SFG+S AD+Q ++ S M V+ G+ + + G H+ N L + Sbjct: 239 QCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVI 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISV 359 + AD+ ALS F +GRG RYR +L G F LIDESYNANP SM+AA+++ Sbjct: 299 AACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNL 358 Query: 360 LSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 LS I P G GRRIAVLGDM E+G S+ FH L + + + V+L G + L L Sbjct: 359 LS-IGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFLFGKEMKFLAVDL 417 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + I + + GD+++VKSS+S ++ L+ + I Sbjct: 418 SSYVEVHYAEHVEEILPLIFTEISKGDLIIVKSSHSTHSSHIVAAFLDRYKVI 470 >gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium caulinodans ORS 571] Length = 476 Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 209/465 (44%), Positives = 274/465 (58%), Gaps = 4/465 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+T ++L A G + G + V GISID+R++ P +AFFAI G + DGH ++ A++ Sbjct: 6 LYTPEEILAATGGTARGTLAD--VTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALEN 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L VV D V G P+ V DVLGAL L AAR RS+A I+A+TGSVGKTTTK Sbjct: 64 GASLAVVAADRVQ--GLPDGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L IALS+ +T+A SYNNH GVPL+LAR P +G+FE+GM+H GEI L +VR Sbjct: 122 EALRIALSADGETHASAASYNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPLVRMVR 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+AVITT+ H++ FSGIEEIA AKAEIF+GLE GT LN D+ F+ L A + A G Sbjct: 182 PHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVASARAKG 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +K I SFG + +L+ S + + G + G H+ QN L L V Sbjct: 242 VKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAV 301 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D+ A AL+ P GRG +++ G TL+DESYNANPASM+AAI VLS+ Sbjct: 302 RLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRT 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GRRIAVLGDM E+G H +LAE L I V+ +G + AL + LP S Sbjct: 362 PVGPRGRRIAVLGDMLELGTEGAQHHRELAEALEAGKIDRVFCAGPLMHALWEVLPSSRK 421 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 Y+ L I +++ GD ++VK SN L+ L E F Sbjct: 422 GGYAVHASHLEPLISAAIRAGDTLMVKGSNGSRMGPLVKALAERF 466 >gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] Length = 478 Score = 355 bits (911), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 205/466 (43%), Positives = 276/466 (59%), Gaps = 2/466 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A+ G +P+ +NGISIDSR+IAP EA+FAIKG +DGH F+ A++ Sbjct: 5 LWTTAAMAEAMHATRSGALPES-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKN 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G GL V+ A S +P+ V DVL L LA AAR R++A I+A+TGSVGKT+TK Sbjct: 64 GGGLAVIAQSQRAKF-SGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L L + T+ S+NNH GVPL+LAR P D F +FE+GM+H GEI L LVR Sbjct: 123 EALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKLVR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+S F L ++ A G Sbjct: 183 PHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKACG 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + I +FG++++AD +L +E S + + + G HMA N L L Sbjct: 243 VARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAAS 302 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +++ D+ + AL+ F P GRG R+ L G TLIDESYNANPASM AA+SVL ++ Sbjct: 303 TLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRV 362 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + +GRRIAVLGDM E+G + H LA ++ I V+ G + L DALP + Sbjct: 363 AIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSARK 422 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 YSET GL + + + GD ++VK S ++ L + FP Sbjct: 423 GGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFP 468 >gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] Length = 1015 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/472 (40%), Positives = 280/472 (59%), Gaps = 10/472 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 PLWT + +A +G +P G + G+SID+RS+ P +A+FAI+G +DGH F+ Sbjct: 542 PLWTLDAMGEATKGW----LPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVA 597 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A GA + VV D V + + VDDVL AL +L +AAR R+ A ++AITGSVG Sbjct: 598 AAHAAGATVSVVAKDWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVG 657 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKEML L++ +A + S+NNH GVPLTLARMP D DF + E+GM+H GEI L Sbjct: 658 KTTTKEMLRTGLAACGHVHAAVASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPL 717 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RPH+A+I +A HL F ++EIA AK+EIF+GL GT LN DD ++ + Sbjct: 718 VQMTRPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNADDERLPIMLDR 777 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG++ +AD +L K S + + G+ + + G H+AQN L+ Sbjct: 778 ATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALV 837 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + + AD+ AL+ +GRG++++ ++ QG LIDESYNANP SM A++ Sbjct: 838 VLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLD 897 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L P GRRIAVLGDM E+G S H D+A+ +S IS V+L+G + AL+D L Sbjct: 898 LLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRALRDTL 957 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + +HV + +T D + + + GDVV+VK+S F ++IN LLE + Sbjct: 958 MNTKGVHVTWCDTADEIGAILADEIRSGDVVMVKASLGMAFAKVINHLLERY 1009 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 46/376 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +++DSR + P F A+ G DG F+ AV+ GA V+ + D A IG +S+PV Sbjct: 24 ITNVTVDSRKVKPGGLFIAVSGSAQDGAKFVPMAVENGAVAVLADRD--ADIGKISVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-------TIALSSIKKTYAC 139 ++ AL +A R I A+TG+ GKT+ L A+ ++ T Sbjct: 82 RNGNIRKALANIASRFHPRQPEIIAAVTGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGV 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL---GMSH---------LGEIRFLTHLVRPHIA 187 + G T PV + + EL G++H L ++R VR +A Sbjct: 142 FAPGRSDYGSLTTPD--PVKLHELLDELAGEGVTHCAMEASSHGLDQMRL--DGVRLAVA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE---LLKAKSHALGI 244 T + HL + IEE +AK +F L K G + Y D F + A+ H L + Sbjct: 198 GFTNLGRDHLDYHADIEEYLTAKLRLFGDLLKPGQPAVIYADDEFSGRVIDHAEFHGLDV 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT+ G+ +++ +Q EV G++ V G N L+ G+ Sbjct: 258 KTVGREGEF----IAVKRIEQHRTSQVAEVVCDGETYRVELPLAGEFQLANALVAAGMAI 313 Query: 305 ILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A AL+ GR GK +G +D Y P +++ +VL Sbjct: 314 ASGMEAKAAFIALTTLEGASGRLELIGK-----TTEGAACYVD--YAHKPEALE---NVL 363 Query: 361 SQISPHGEGRRIAVLG 376 + + P+ G+ + V G Sbjct: 364 AALRPYTTGQLVLVFG 379 >gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] Length = 1257 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 206/467 (44%), Positives = 273/467 (58%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLW D L+A+ G G + + GISIDSR+I P EAFFAIKG ++DGH F AV+ Sbjct: 785 PLWLLSDFLEAVDGDVHGDLADD-ITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVE 843 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + VV+ + + + V VDDVL AL +L VAAR RSKA IIA+TGSVGKT T Sbjct: 844 AGASVAVVSREKLGELPEGGRYV-AVDDVLKALERLGVAARARSKARIIAVTGSVGKTGT 902 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L + LS T+A + S+NNH GVPLTLARM D +FGIFE+GM+H GEI L +V Sbjct: 903 KEALRLCLSKSGITHAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEITPLVKMV 962 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A++TT+ P HL F+ +E+IA AKAEIF G+E G LN D+ ++LL+ + Sbjct: 963 RPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLLRYLAAVA 1022 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I SFG A +K + S + + G+ + G H N L L Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L A++ A AL+ +GRG + +N G L+DESYNANPASM+AAI++++ Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + GRRIAVLGDM E+G S H DLA L I V+ G H+ L + LP Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGTHMKVLWERLPAQT 1202 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 YSET D L + S + D+V+VK S L++ L + FP Sbjct: 1203 RGAYSETSDKLEKDLLSEVRPNDIVMVKGSLGTRMGPLVDALKKRFP 1249 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 36/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSI 83 ++G++ DSR++ P F A+KG DG FI AV GA ++++ D + + + Sbjct: 27 ISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAGAAAILIDADRIDDDIRKKAKQV 86 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT----------KEMLTIALSSI 133 P+ +D L +A A R ++A+TG+ GKT+ +++ +L +I Sbjct: 87 PLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTSVAVFVRQIFEYAGLVSASLGTI 146 Query: 134 KKTYACIGSYN-----NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186 + SY + + + L R+ D GI M S G + VR Sbjct: 147 GTVTSTGQSYGGLTTPDPVSLHEDLKRLAED---GITHAAMEASSHGLDQHRLDGVRIVA 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + H+ +E+ AK +F L G + ++ + F + + + G+K Sbjct: 204 AGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVIDPEAQFADRVLEVAKERGLK 263 Query: 246 TIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T + FG+ D ++R + +E++ V G N L+ G+ Sbjct: 264 TFTTGFFGE----DLKVRSVQPEGFSQVLELETAEGVFSVALPLAGDFQVSNALIAAGLA 319 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + TA++AL+V GR + N G +D Y P +++ +VL+ + Sbjct: 320 IAAGVPLQTALEALTVLRGAPGRIEHVGTREN-GALVFVD--YAHKPEALE---NVLAAL 373 Query: 364 SPHGEGRRIAVLG 376 P GR I+V G Sbjct: 374 RPFAPGRLISVFG 386 >gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] Length = 476 Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 201/470 (42%), Positives = 278/470 (59%), Gaps = 3/470 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN PLWT D + G G + Q + GISIDSR+I EAFFAIKG +DGHDF+ Sbjct: 1 MNAPLWTRDDFIAGANGTPKGELGQD-ITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGT 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA + VV+ D + S+ S + VDD L A+ +LAVA+R RS A I+A+TGSVGK Sbjct: 60 ALANGASVAVVSADKLDSLPSTGRYLI-VDDPLAAMERLAVASRARSNARIVAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L +AL K +A + S+NNH GVPLTLARMP DVDFG+FE+GMS GEI L Sbjct: 119 TGTKEALRLALGRSGKVHASVASFNNHWGVPLTLARMPADVDFGVFEIGMSAPGEITPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A ITT+ HL F +E IA AKAEIF+GLE G LN D++ F+LL + Sbjct: 179 RMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQFDLLMFLA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ I +FG+++NAD ++ + S + ++ G+ + G H N L Sbjct: 239 KADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L ++ A +AL+ +GRG+ L +G L+DESYNANPASM+AA+SV Sbjct: 299 LTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GRRIAVLGDM E+GE H +L++ ++ + ++ G + L D +P Sbjct: 359 LGEAEITPPGRRIAVLGDMRELGEDGPKLHAELSDPVNEAGVEALFCVGPQMKQLWDRVP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + V Y+E L + + GDVV+VK S L+ L ++P Sbjct: 419 QGLRVMYAEQAADLQDHLLQEIRSGDVVMVKGSLGTRMGPLVEALKTDYP 468 >gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] Length = 479 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 205/470 (43%), Positives = 278/470 (59%), Gaps = 4/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PLWT L A+ G IG P + G+SID+R++ P + FFAI+G + DGH ++ A Sbjct: 4 IEPLWTPDALAAAVGGTLIG-APARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMA 62 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA L VV D V ++ + + VDDVLGAL AAR R++A I+ +TGSVGKT Sbjct: 63 ADRGAALSVVERDRVGTLPEGAA-LLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L +AL + T+A SYNNH GVPL+LARMP +G+FELGM+H GEI L Sbjct: 122 TTKEALLLALGADGPTHASAASYNNHWGVPLSLARMPASSAYGVFELGMNHAGEIEPLVK 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AVITTI P H++ F +E IA AKAEIF G+E G LN D+ FE L A + Sbjct: 182 MVRPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGAAVLNRDNPHFERLAAAAR 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A GI+ I FG++ +A +L K ++ S + G+++ G H+ QN L L Sbjct: 242 AAGIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVL 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD+ A ALS P GRG R + GF TLIDESYNANPASM+AA++VL Sbjct: 302 AAARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVL 361 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G GRR+AVLGDM E+G ++ H D+A + ++ V+ +G + AL +ALP Sbjct: 362 GTAPVEGRGRRLAVLGDMLELGPRGEAMHADIAPAAASADL--VFCAGPLMRALWEALPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + ++ L + L GDVV+VK SN L L+E FPA Sbjct: 420 NRRGAWAPDARALLPLVAERLRGGDVVMVKGSNGSRMGPLARALVERFPA 469 >gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] Length = 478 Score = 342 bits (876), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 209/478 (43%), Positives = 278/478 (58%), Gaps = 24/478 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A+ +G +P+G V GISIDSR+IAP EA+FAIKG +DGH F+ A++ Sbjct: 5 LWTIAAMAEAMSAERVGALPEG-VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKN 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G G+ V+ A +P+ V DVL L LA A+R R+ A IIA+TGSVGKT+TK Sbjct: 64 GGGVAVIAQSHRAEFPD-DLPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L L + KT+A S+NNH GVPL+LAR P F IFE+GM+H GEI L LVR Sbjct: 123 EALRTVLQAQGKTHASAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLVKLVR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+S F L+ K+ A G Sbjct: 183 PHLAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKAKASG 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVVHHGIGY-------HM 292 + I +FG++ AD +L ++V L G+ +++HH + Y HM Sbjct: 243 VSRIVTFGENAKADARL-----------LDVALHGECSAVHADLLHHDVTYKVGVPGRHM 291 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N L L ++ AD+ + AL+ F P GRG R L G TLIDESYNANPAS Sbjct: 292 AMNSLAVLAATTLAGADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPAS 351 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA++VL Q + GRRIAVLGDM E+G + H LA ++ I V+ G + Sbjct: 352 MTAAMNVLGQTAIGPRGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMR 411 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 AL DALP + Y+E L + + + GD ++VK S ++ L + FP+ Sbjct: 412 ALWDALPSAKKGGYAEDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPS 469 >gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] Length = 498 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 197/464 (42%), Positives = 278/464 (59%), Gaps = 2/464 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT L+ ++ G P+ G+SID+R++ P + FFAI G + DGHD++ A+ Sbjct: 22 EPLWTGLGLVAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAAL 81 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA VV+ S+ L P++ V DDVL AL +L VAAR R++A I A+TGSVGKT Sbjct: 82 EKGALAAVVDEAHAESLARLG-PLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKT 140 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L +ALS+ +T+A + SYNNH GVPLTLARMP +FG+FE+GM+H GEI LT Sbjct: 141 STKEALRLALSAAGRTHASVASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTR 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITT+AP H+ NF+G+E IA AKAEIF GLE G L D+ FE L A + Sbjct: 201 MVRPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPGGVAILPADNPQFERLAAAAK 260 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + SFG K+A+ +L + ++ S +E + G+ + G H+A N L L Sbjct: 261 RSAAGLVTSFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVL 320 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L D A + L+ F + GRG+R G FTLIDESYNANPASM+AA + Sbjct: 321 LAAKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLA 380 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++P GRR+AVLGDM E+G + H LA+ L+ + V+ +G L DALP Sbjct: 381 GALAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVFAAGPLCKHLFDALPA 440 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + E + + +++ GD+V+VK SN ++ L Sbjct: 441 AMRGEWRENAQMIAPAVAAAVHAGDLVIVKGSNGSKMSAVVEAL 484 >gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Xanthobacter autotrophicus Py2] gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xanthobacter autotrophicus Py2] Length = 493 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 203/444 (45%), Positives = 261/444 (58%), Gaps = 1/444 (0%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GISIDSR++ P +AFFAI G + DGH ++ A+ GA L VV D P+ Sbjct: 43 VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVARDRADGF-PADAPLL 101 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDVL AL +A AAR RSKA I+A+TGSVGKTTTKE L IAL + +T+A SYNNH Sbjct: 102 VVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTKEALRIALGADGETHASAASYNNH 161 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPL+LAR P + +G+FE+GM+H GEI L LVRPH+A++TT+ P H++ FS IEEI Sbjct: 162 WGVPLSLARFPREARYGVFEIGMNHPGEITPLVRLVRPHVAIVTTVEPVHIAQFSSIEEI 221 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AKAEIF+G+E G LN D+ F+ LKA + A GI I SFG + AD +L+ Sbjct: 222 ADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARGISRIVSFGSGEGADVRLKDAALK 281 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S S + G + G H+ QNML L + AD+ A ALS P GR Sbjct: 282 SYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAAKLAGADMALAALALSHLKPPPGR 341 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G + L G TL+DESYNANPASM+AA+ VLS+ GRRIAVLGDM E+G + Sbjct: 342 GVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRTPVGPRGRRIAVLGDMLELGPDGE 401 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H LAE + I V+ G + AL ALP Y+ L + +++ GD Sbjct: 402 AHHAGLAEAIVAAKIDQVYCCGPQMHALWQALPSERRGGYAIHATHLEPMVAAAIRVGDT 461 Query: 447 VVVKSSNSCGFYRLINLLLEEFPA 470 ++VK SN L+ L E F A Sbjct: 462 LMVKGSNGSRMGPLVKKLAERFRA 485 >gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 479 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 203/468 (43%), Positives = 268/468 (57%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT D + A G ++ P V GISIDSR++AP +A+FAI+G +DGHDF+ A+ Sbjct: 4 QPLWT-SDAIIAAMGAAVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAAL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA L VV T P+ VDDVL L L AAR R A +IA+TGSVGKT+ Sbjct: 63 KAGAALAVVETAQRGKFAP-DAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + +T+A + S+NNH GVPLTLAR P V + +FE+GM+H GEI L + Sbjct: 122 TKEALRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKM 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+ F+ L A + Sbjct: 182 VRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I SFG AD +LR ++ S ++ + G + + G H+A N L L Sbjct: 242 AGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ A AL+ P GRG R L QG TLIDESYNANPASM AA+ VL Sbjct: 302 AADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLG 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G+GRRIAVLGDM E+G H LA + + V+ G + L DAL Sbjct: 362 SAEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSG 421 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ET L + +++ GDV+++K S ++ L + FP Sbjct: 422 KRGGYAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFP 469 >gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] Length = 487 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 271/470 (57%), Gaps = 6/470 (1%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A G IG P+ V G SID+RS+ P + FFAI+G DGHDF+ A+ Sbjct: 5 PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62 Query: 63 KGAGLVVV---NTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KGAG VV +G L++P G D VL A+ +L +AAR R+ A IIA+TGSVG Sbjct: 63 KGAGAAVVAEVRAKEFEGVGPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSVG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKE L LS+ T+A + SYNNH GVPLTL RMP D FG+FE+GM+H EI L Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGAEILPL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E L A Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + +FG+ + AD + + S ++ + G + G H+A N L Sbjct: 243 AQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS++AA++ Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + L +AL Sbjct: 363 TLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P ++ + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 423 PMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [polymorphum gilvum SL003B-26A1] gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polymorphum gilvum SL003B-26A1] Length = 476 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 209/471 (44%), Positives = 283/471 (60%), Gaps = 6/471 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + A G +G VP G + GISIDSR++ P +AF AI+G +DGHDF+ A+ Sbjct: 3 QPLWTRDAFVDATGGSVLGDVP-GAIGGISIDSRTLQPGDAFVAIEGERFDGHDFVAAAL 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA L +V D + + + V VDD L AL LA AAR RS A I+A+TGSVGKT Sbjct: 62 EAGAALALVARDRLERLPADGRYVV-VDDPLEALRGLARAARARSHARIVAVTGSVGKTG 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L +AL +T+A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEI L L Sbjct: 121 TKEALRLALERSGRTHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLVAL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+ITT+ P HL F +E+IA AKAEIF GLE G LN D++ F+LL + Sbjct: 181 VRPHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPGGVAILNRDNAQFDLLTFLARN 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ I +FG+ AD ++ + S ++ ++ G+ + G H+ +N L L Sbjct: 241 AGVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLL 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL- 360 V L AD+ A AL +GRG + R L G TLIDESYNANPASM+AA+ VL Sbjct: 301 AVVELGADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQVLG 360 Query: 361 -SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 +Q+SP GRRIAVLGDM E+GE + + H L E ++ + V+ +G H+ L + LP Sbjct: 361 DAQVSP--PGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRRLWELLP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y+E GL ++ L GDVV++K S L+ L +E+PA Sbjct: 419 VHRRAAYAEEAAGLAAMLKEDLRPGDVVMIKGSLGTRMGPLVEALKQEYPA 469 >gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Azospirillum sp. B510] gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Azospirillum sp. B510] Length = 498 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 197/453 (43%), Positives = 264/453 (58%), Gaps = 10/453 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LWT D A GH G P + G++IDSR +AP + F AI+GP++DGH F+ A+ Sbjct: 7 LWTARDAAAATGGHLTG--PSAWAATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAALA 64 Query: 63 KGAGLVVVN--TDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA +V+ D + + L I PV D L A+ + V AR A II +TGSVGK Sbjct: 65 AGAVAALVDHPPDGLPADAPLLIAPV----DPLEAMAAMGVVARANCGARIIGVTGSVGK 120 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L LS+ TYA GS NNH GVPL+LAR+P D +G+FELGM+H GEI L+ Sbjct: 121 TGTKETLRHVLSAQGATYATEGSLNNHWGVPLSLARLPADSAYGVFELGMNHAGEIGPLS 180 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+PH+A+ITT+ AHL FSG+E IA AKAEIFEGL+ G LN D+ + L A + Sbjct: 181 RQVKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAA 240 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+ ++ FG + AD +L + S + ++G+ ++ G H N L Sbjct: 241 RRHGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSV 300 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L DV TA +ALS +GRG R R L QG FTLIDESYNA+PA+M A + V Sbjct: 301 LLAVKALGGDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEV 360 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I P GRR+AVLGDM E+G+ + + HI LAE L + V G H+ AL D LP Sbjct: 361 LGKIDPGAGGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDTVHACGPHMRALFDRLP 420 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ ++ET L + + + GDV++VK S Sbjct: 421 EAMRGVWTETSVELAPIVAAGVKGGDVIMVKGS 453 >gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 479 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 268/467 (57%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A++ + G +P+ V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 5 PLWTSDAMAEAMRAAASGSLPRD-VFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV A + P+ VDDVL L +L AAR R A IIA+TGSVGKT+T Sbjct: 64 AGAALAVVERAQRAKFAA-DAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + +T+A + S+NNH GVPL+LAR P DV + +FE+GM+H GEI L +V Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+ +ITT+ P HL FSGIE IA AKAEIF GL GT LN D++ F+ L + Sbjct: 183 RPHLVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+ + SFG AD +L ++ S + + G+ + G H+A N L L Sbjct: 243 GVGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A ALS P GRG R Q TLIDESYNANPASM AA+ VL Q Sbjct: 303 AETVGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQ 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +GRRI VLGDM E+G H DLAE + I V+ G + L DAL Sbjct: 363 VPVGPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ET L + +++ GDV+++K S ++ L + FP Sbjct: 423 RGGYAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFP 469 >gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 479 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 264/467 (56%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A++ G +P + GISIDSR++ P +A+FAI+G +DGH F+ A+ Sbjct: 5 PLWTASAMAEAMRATPSGALPDA-IFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GAGL VV + P+ VDDVL AL L+ A+R R A +IAITGSVGKT+T Sbjct: 64 AGAGLAVVERAQRDKFPA-DAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L + +T+A + S+NNH GVPL+LAR P F +FE+GM+H GEI+ L LV Sbjct: 123 KEALRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL F +E IA AKAEIF GLE G + LN D+ F L+ ++ A Sbjct: 183 RPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAH 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI I SFG + AD +L E S + + G+ + G HMA N L L Sbjct: 243 GISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ A LS P GRG R+ + G TLIDESYNANPASM AAI+VL Q Sbjct: 303 AELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQ 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 363 AAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + +++ GDV++VK S ++ L +P Sbjct: 423 RGGYAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYP 469 >gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 263/467 (56%), Gaps = 7/467 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT L+ +Q G VP GISID+R++ + FFAIKG + DGHD++ A K Sbjct: 15 LWTPLGLVTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAK 74 Query: 64 GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VV+ D +A+ G P++ V +VL AL +L AAR R +A ++A+TGSVGKT Sbjct: 75 GAMAAVVDEAHADRLAAHG----PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKT 130 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L+ +A + SYNNH GVPLTLARMP D FGIFE+GM+H GEI L Sbjct: 131 STKEALRLVLTQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVG 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITT+AP HL F +E IA AKAEIF GL G ++ D FE L + Sbjct: 191 MVRPHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFERLAEAAR 250 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I SFG + AD +L S+ S ++ +QG+++ G H A+N L L Sbjct: 251 HSPAGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVL 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ A L+ P+ GRG++ G F LIDESYNANPASM+AA+ + Sbjct: 311 LAAKACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMA 370 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G GRRIA+LGDM E+G + H LA++L V+ +G + L DALP Sbjct: 371 GTLPLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGPLMRHLYDALPS 430 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + L + +++ D+V+VK SN L+ L ++ Sbjct: 431 GLRGEWRAKAEDLVPIVGATVQRNDIVLVKGSNGSRMKLLVESLKDK 477 >gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] Length = 487 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 268/482 (55%), Gaps = 30/482 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A G IG P+ V G SID+RS+ P + FFAI+G DGHDF+ A++ Sbjct: 5 PLWTPAALEAATGGRLIG-TPRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62 Query: 63 K----------------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 K GAG V L++P G D VL A+ +L +AAR R+ Sbjct: 63 KGAGAAVVAEARAKEFEGAGPV------------LAVPGEGEDPVLDAMRRLGLAARART 110 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A IIA+TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RMP D FG+FE Sbjct: 111 GAAIIAVTGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFE 170 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 +GM+H EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N Sbjct: 171 IGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVIN 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D+ +E L A + A + +FG+ + AD + + S ++ + G + Sbjct: 231 RDNPNYERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLG 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H+A N L L + L AD+ A +L+ P GRG+R + G L+DESY Sbjct: 291 TPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESY 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPAS++AA++ L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ Sbjct: 351 NANPASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFA 410 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G + L +ALP + + T +G+ + ++L GD V+VK SNS R++ + Sbjct: 411 VGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKA 470 Query: 467 EF 468 + Sbjct: 471 RY 472 >gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium chloromethanicum CM4] gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium chloromethanicum CM4] Length = 487 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 190/470 (40%), Positives = 272/470 (57%), Gaps = 6/470 (1%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A G IG P+ V G SID+RS+ P + FFAI+G DGHDF+ A+ Sbjct: 5 PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALD 62 Query: 63 KGAGLVVVNTDMVAS---IGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KGAG VV +GS L++P G D VL A+ +L +AAR R++A I+A+TGSVG Sbjct: 63 KGAGAAVVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAVTGSVG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKE L LS+ T+A + SYNNH GVPLTL RMP FG+FE+GM+H EI L Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNHGAEILPL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E L A Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + +FG+ AD + + + S ++ + G + G H+A N L Sbjct: 243 AQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS++AA++ Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + L +AL Sbjct: 363 TLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAHLFEAL 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P ++ + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 423 PMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris DX-1] gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris DX-1] Length = 479 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 194/468 (41%), Positives = 260/468 (55%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + +A+ G +P+ V GISIDSR++AP +A+FAI+G +DGHDF+ A+ Sbjct: 4 EPLWTSDAMAEAMAATRSGTLPRD-VFGISIDSRTLAPGDAYFAIRGDVHDGHDFVAAAL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA L VV + P+ VDDVL L +L +AAR R A +IA+TGSVGKT+ Sbjct: 63 NAGAALAVVEKAQRDKFAA-DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + T+A + S+NNH GVPLTLAR P V + +FE+GM+H GEI L + Sbjct: 122 TKEGLRSVLGAQGPTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHAGEIEPLVKM 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+ITT+ P HL FSG+E IA AK+EIF GLE G LN D F+ L A + Sbjct: 182 VRPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMFDRLSANALR 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 242 ANVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ A A+S P GRG R + G TLIDESYNANPASM AA+ VL Sbjct: 302 AAELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLG 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + +GRRIAVLGDM E+G + H L + I V+ G + L DAL Sbjct: 362 RAEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRNLWDALSSG 421 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ L + +++ GD V+VK S +IN + + FP Sbjct: 422 KRGGYAGDATALESQVVAAIRAGDAVMVKGSLGSRMKTIINAIEKRFP 469 >gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] Length = 479 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 270/464 (58%), Gaps = 8/464 (1%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT D+L A G + G +G+SIDSR++ + F AI G + DGH ++ A++ Sbjct: 4 PLWTKEDVLAATGGKAEGAAWS--ASGVSIDSRTLEAGDLFVAIIGENSDGHAYVEGALK 61 Query: 63 KGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V+ T+ + + G L I V D L ALN L AAR R+KA ++A+TGSVGKT Sbjct: 62 KGAAAAIVSAPTEAMRAAGPLVI----VTDTLAALNALGRAARARTKAKVVAVTGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TKE L + LS T+A SYNN GVPL+LARMP FGIFE+GM+H GEI L+ Sbjct: 118 GTKEALKLILSEQGATHASAASYNNLWGVPLSLARMPAATRFGIFEVGMNHPGEITPLSK 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P +++ITT+ H+ F +E+IA AK EIF+GL+K G LN D+ +E L+AK+ Sbjct: 178 LVEPFVSLITTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKAE 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G I SFG+ + AD +L K + S + + G+ + G H+ N L L Sbjct: 238 KSGAGRIISFGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAML 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V L AD+ A A++ +GRG+R+ + G FTL+DESYNANP SM+AA+ L Sbjct: 298 ACVHALEADLAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDAL 357 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAV+GDM E+GE S H LA+ + I V+ G H+ L ALP Sbjct: 358 GRAKPEGNGRRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMRELYKALPA 417 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + Y+ET L ++ ++ GDVV+VK S L++LL Sbjct: 418 AAQGAYAETSAELGPLLRDAVEPGDVVMVKGSLGSRMGPLVDLL 461 >gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] Length = 474 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 261/465 (56%), Gaps = 6/465 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW+ L+ A++ G +P+ +GISID+R++AP + FFAIKG DGHDF+ A ++ Sbjct: 6 LWSGLGLVGALRARVSGGLPRD-ASGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFER 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV+ ++ + P++ V DV +L +L AR RS A ++ +TGSVGKT+TK Sbjct: 65 GAAGAVVDEAHAGALAGRA-PLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM LS +A SYNN GVPL+LARMP FG+FE+GM+H GEI L LV Sbjct: 124 EMAAAVLSRFGAAHASAASYNNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAALAPLVE 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++T +AP HL +F+ +E IA AK+EIF G+ G LN DD FE + + A Sbjct: 184 PHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVVDGGVAILNRDDETFERMLEAAAASR 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ FG S+ A +L + ++ +E + G+ + G H A N L L I Sbjct: 244 AAHVFGFGVSEGAQARLLSYD--PRENSVEADIFGRRLRYRIGAPGRHFALNSLAVLTIA 301 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D+ A AL+ F P +GRG+R + TLIDESYNANP SM+AA+ +L Sbjct: 302 HVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALELLGAE 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 P GRR+AVLGDM E+G + H +LA L + ++ +G + L A P + Sbjct: 362 RPI--GRRVAVLGDMLELGPSAAELHAELASDLEAAGVDLLFTAGPLMARLYYAAPERMR 419 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + T L + SL GDVV++K SN R++ + +F Sbjct: 420 GAHRATARELEEAVLDSLGAGDVVMIKGSNGSRMTRIVEAIRTKF 464 >gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 315 bits (808), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 185/455 (40%), Positives = 257/455 (56%), Gaps = 10/455 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 PLWT ++ +A+ GI P V G+SIDSR++ + F AIKG DGH FI Sbjct: 8 KPLWTGAEIARAL-----GIAPPAADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFIT 62 Query: 59 HAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A GA +V+ D + + P+F VDD AL +L AR R+ A I A+TGSV Sbjct: 63 AAFDNGAAGALVSRDYAPQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSV 122 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEML + L T+A + SYNN +GVPL+LARMP FG+FE+GM+H GEI Sbjct: 123 GKTTTKEMLRVMLGESGPTHASVKSYNNFMGVPLSLARMPAASRFGVFEIGMNHAGEIVP 182 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L LVRPH+A++T +AP H+ F+ EIA AKAEIFEGLE+ G L D+ FE L A Sbjct: 183 LAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPADNPHFESLAA 242 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + FG S A+ +L +++ E S + + + + G H+AQN + Sbjct: 243 FARERSARVV-PFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGRHLAQNAV 301 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L VS+L +V+ A AL+ F EGRG+ +G +IDESYNANPASM AA+ Sbjct: 302 AALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANPASMHAAL 361 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL + P RRIAVLGDM E+G + FH LA + I V+ +G + +L ++ Sbjct: 362 DVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVFCAGPLMASLHES 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 LP ++ + L + ++ GD V++K S Sbjct: 422 LPAEKRGGWANASEDLRGPVLDAVCGGDAVMIKGS 456 >gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] Length = 487 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 266/482 (55%), Gaps = 30/482 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A G IG P+ V G SID+RS+ P + FFAI+G DGHDF+ A++ Sbjct: 5 PLWTPAALEAATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62 Query: 63 K----------------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 K GAG V L++P G D VL A+ +L +AAR R+ Sbjct: 63 KGAGAAVVAEARAKEFEGAGPV------------LAVPGEGDDPVLDAMRRLGLAARART 110 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A I+A+TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RM D FG+FE Sbjct: 111 GAAIVAVTGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMLEDTRFGVFE 170 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 +GM+H EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N Sbjct: 171 IGMNHGAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVIN 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D+ +E L A + A + +FG+ AD + + S ++ + G + Sbjct: 231 RDNPNYERLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLG 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H+A N L L + L AD+ A +L+ P GRG+R + G L+DESY Sbjct: 291 TPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESY 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPAS++AA+S L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ Sbjct: 351 NANPASIRAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFA 410 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G + L +ALP + + T +G+ + ++L GD V+VK SNS R++ + Sbjct: 411 VGPLMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKGSNSMRMVRIVEAVKA 470 Query: 467 EF 468 + Sbjct: 471 RY 472 >gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter winogradskyi Nb-255] gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 196/451 (43%), Positives = 265/451 (58%), Gaps = 2/451 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT ++ A++ G +P + GISIDSR++AP EA+FAIKG +DGH F+ A+ Sbjct: 4 RPLWTLDEMAAAMRAEGRGTLPAA-ITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAAL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA L VV +L +P+ VDDVL AL LA A+R R A +IA+TGSVGKT+ Sbjct: 63 KAGAALAVVEAARRDQF-ALELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + KT+ + S+NNH GVPL+L+R P D F +FE+GM+H GEI L + Sbjct: 122 TKEALRGVLGAQGKTHVSVASFNNHWGVPLSLSRCPADARFAVFEIGMNHAGEITPLVKM 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+ITT+ P HL FSG+E IA AKAEIFEG+E G + LN D++ F L+ + Sbjct: 182 VRPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 LGI I +FG + AD +L S + ++ G + G HMA N L L Sbjct: 242 LGIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 S+ AD+ A ALS P GRG R A+ G LIDESYNANPASM AA++VL Sbjct: 302 AASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLG 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + +GRRIAVLGDM E+G S H DL + ++ ++ G + L +AL Sbjct: 362 EAKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRNLWNALSSG 421 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 Y+E L + +++ GDV++VK S Sbjct: 422 RRGGYAEDAAALESQVTAAIRSGDVIMVKGS 452 >gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris TIE-1] gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris TIE-1] Length = 479 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 200/468 (42%), Positives = 260/468 (55%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + +A+ G +P+ V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 4 QPLWTSDAMAEAMAATRSGTLPRD-VYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA L VV A P+ VDDVL L +L +AAR R A +IA+TGSVGKT+ Sbjct: 63 NAGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + T+A + S+NNH GVPL+LAR PVD F +FE+GM+H GEI L + Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRFAVFEIGMNHAGEIEPLVKM 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPHIA+ITT+ HL FSGIE IA AK+EIF GLE G LN D F+ L + + Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 242 ANVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AD+ A ALS P GRG R + G TLIDESYNANPASM AA+ VL Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G+GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 362 RAEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ L + +++ GDVV+VK S ++ L + FP Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469 >gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] Length = 478 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 204/468 (43%), Positives = 267/468 (57%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + A++ G +P + GISIDSR+I P + +FAIKG +DGH F+ A+ Sbjct: 3 EPLWTLDVMAAAMRAERRGALPAA-ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAAL 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA L V+ + P+ VDDVL AL LA A+R R A +IA+TGSVGKT+ Sbjct: 62 KAGAALAVIEAAQRDKFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + KT+A + S+NNH GVPLTLAR P D F IFE+GM+H GEI L + Sbjct: 121 TKEALRSVLGAQGKTHASVASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKM 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPHIA+ITT+ P HL FSGIE IA AKAEIFEG+E G + LN D++ F L+ ++ Sbjct: 181 VRPHIAIITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRAKK 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 LGI I SFG + AD +L S + ++ G + G HMA N L L Sbjct: 241 LGIAKIVSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAVLA 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 S+ AD+ A ALS P GRG R+ + G TLIDESYNANPASM AA++VL Sbjct: 301 AASLAGADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTVLG 360 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 Q + RRIAVLGDM E+G H L E ++ I V+ G + L DAL Sbjct: 361 QAGVGTQSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRNLWDALSSG 420 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + +++ GDV++VK S ++ L + FP Sbjct: 421 KRGGYAEGSVALESQVVAAIRAGDVIMVKGSLGSRMKVIVTALEKRFP 468 >gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris CGA009] gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Rhodopseudomonas palustris CGA009] Length = 479 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 260/468 (55%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + +A+ G +P+ V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 4 QPLWTSDAMAEAMAATRSGTLPRD-VYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAAL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA L VV A + P+ VDDVL L +L +AAR R A +IA+TGSVGKT+ Sbjct: 63 NAGAALAVVEKAQRAKF-APDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + T+A + S+NNH GVPL+LAR P D F +FE+GM+H GEI L + Sbjct: 122 TKEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRFAVFEIGMNHAGEIEPLVKM 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPHIA+ITT+ HL FSGIE IA AK+EIF GLE G LN D F+ L + + Sbjct: 182 VRPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALR 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 242 ASVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AD+ A ALS P GRG R + G TLIDESYNANPASM AA+ VL Sbjct: 302 AAELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLG 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G+GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 362 RAEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSG 421 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ L + +++ GDVV+VK S ++ L + FP Sbjct: 422 KRGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFP 469 >gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium populi BJ001] gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium populi BJ001] Length = 487 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 190/470 (40%), Positives = 274/470 (58%), Gaps = 6/470 (1%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A G IG P+ V G SID+RS+ P + FFAI+G DGHDF+ A++ Sbjct: 5 PLWTPAALESATGGRLIG-APRA-VTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALE 62 Query: 63 KGAGLVVVNT---DMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KGAG VV + +G L++P D VL A+ +L +AAR R+ A I+A+TGSVG Sbjct: 63 KGAGAAVVAAARANEFEGVGPVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSVG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKE L LS+ T+A + SYNNH GVPLTLARMP FG+FE+GM+H EI L Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNHGAEILPL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E L A Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYERLLAH 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 +HA + +FG+ AD + + + S ++ + G + G H+A N L Sbjct: 243 AHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVAMNSLG 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L AD+ A +L+ P GRG+R + G LIDESYNANPAS++AA++ Sbjct: 303 VLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASIRAALA 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ + I V+ G + L +AL Sbjct: 363 TLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVFAVGPLMAHLFEAL 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P ++ + + +G+ + ++L GD V+VK SNS R++ + + Sbjct: 423 PMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] Length = 482 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 186/472 (39%), Positives = 263/472 (55%), Gaps = 6/472 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT +L A G G + ++G SID+R++ P + FFAI+G DGHDF+ A Sbjct: 1 MTALWTREELESATGGCLTGA--ERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDA 58 Query: 61 VQKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GAG VV+ ++ + L++P G D VL A+ +L AAR R+ A ++A+TGS Sbjct: 59 LGRGAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTGS 118 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKT TKE L LS +T+A SYNNH GVPLTL RMP +G+FE+GM+H EI Sbjct: 119 VGKTGTKEALRHVLSEQGETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEIV 178 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT VRP IA+ITTIAPAH+ +F+ + IA AK EIF GL G LN D F+ L Sbjct: 179 PLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRLA 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + A + +FG+ +AD + K + S ++ + G+ + G H A N Sbjct: 239 AHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAALNS 298 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + +V L AD+ A +L P GRG+R + G L+DESYNANP +++AA Sbjct: 299 LGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVRAA 358 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ++ L+ I GRRIAVLGDM E+G + H LAE + + V+ +G + L + Sbjct: 359 LATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLVFTAGPLMRNLFE 418 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ALP S ++T L + +L GD V+VK SN R++ L + Sbjct: 419 ALPVSRRGAVADTAADLLEPLARTLRSGDAVMVKGSNGSRMGRIVEALKARY 470 >gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] Length = 473 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 255/464 (54%), Gaps = 11/464 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT D A G S G G+SID+R+I P + F A+ DGH+F+ A QK Sbjct: 3 LWTSADAASATGGTSQGTW---TATGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +VN G + VDDVL AL +L AAR R++A +IAITGSVGKTT K Sbjct: 59 GASAALVNH---VPDGMDAAKCLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML ALS K +A + SYNNH GVPLTL+RMPVD D+ + E+GMS GEI L+ + R Sbjct: 116 DMLKQALSGQGKIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSRMAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITTIAPAHL F IE IA KA IFEGLE G + D +L + A Sbjct: 176 PHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAAVAH- 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+++ AD +L + + M + G H A N + L V Sbjct: 235 AAEVVTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAV 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG---FFTLIDESYNANPASMKAAISVL 360 + AD A ALS + P EGRG+R R L++ LID+++NANP S+ A + VL Sbjct: 295 AASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVL 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + I+P GRRIAVLGDM E+G+ H D+A + ++ + V G ++ L ALP Sbjct: 355 AAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMVHLDAALPG 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++ET L + +L GDVV+VK S +++ L Sbjct: 415 AKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKGSRVSLVVDAL 458 >gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 184/467 (39%), Positives = 250/467 (53%), Gaps = 11/467 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT D +A QG + G+ +G+SID+R++ P + F A+ DGHDF A+ Sbjct: 4 PLWTARDAAEASQGR---LTEGGWAASGVSIDTRTLQPGDLFVALTA-QRDGHDFAQAAL 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+V+ + S P V++VL L +L AR RS A + +TGSVGKT+ Sbjct: 60 DKGAAAVLVSNPE-----ACSGPRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L + SYNNH GVPLTLARMP +FE+GM+H GEI LT + Sbjct: 115 VKEALAAVFIKAGPAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELTRM 174 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL N +E IA AKAEIFEGLE G + DD F L Sbjct: 175 VRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRLMQAVQG 234 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + FG + A ++ + + + + + GK M+ G H A N + Sbjct: 235 SGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDESYNANPASMKAAISVL 360 D D A+ ALS P EGRG + L++G ++DESYNANPASM+AA VL Sbjct: 295 AALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVL 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G+ R+IAV+G+M E+G S++ H LAE L + V G AL DALP Sbjct: 355 KLRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARALMDALPA 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ET + + DGDVV+VK SN+ G ++L++ L ++ Sbjct: 415 EHRAAWCETAESAIETLSELARDGDVVLVKGSNASGVHKLVSSLRDK 461 >gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] Length = 472 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 182/453 (40%), Positives = 257/453 (56%), Gaps = 16/453 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A G +G G+SIDSRS+ P + F A+ G DGH+F++ Sbjct: 14 PLWTADEIAAATGGQVLGDFE---ATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTAD 69 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTT 121 +GA +++ ++IP V+D AL +L VAAR R+ + A+TGSVGKT+ Sbjct: 70 RGAAGALISK-------PVAIPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTS 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + L K +A + SYNNHIGVPLTLARMP D +FE+GM+H GEI L+ Sbjct: 123 VTRAVEAGLRRAGKAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGF 182 Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +RPH ITT+ P HL NF+ G E +A AKAEIF G+E G LN D+ +F LLKA++ Sbjct: 183 IRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAE 242 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + ++SFG + QL ++ + + L+G ++ G H N L L Sbjct: 243 KAGAE-VWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVL 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L D +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ L Sbjct: 302 LMLEALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTL 361 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRRI VL DM E+G LS FH DLA ++ +I V+ +G + +L +ALP Sbjct: 362 G--AREVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFCAGPLMKSLWEALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + Y+E+ L + S++ GDVV+VK SN Sbjct: 420 TRRGGYAESAAELAPQVVSAIRAGDVVMVKGSN 452 >gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 466 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 181/469 (38%), Positives = 270/469 (57%), Gaps = 14/469 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G +IG V+GISID+R++ + F A+K DGH+F+ A Sbjct: 1 MSALWTSQEAAVATAGQAIG---DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQA 56 Query: 61 VQKGAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++KGAG LV D VA P+ V+DV AL L AAR R+ A ++A+TGSVG Sbjct: 57 LEKGAGAALVTHRPDDVAE----DAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEML L+ +T+A + SYNNH GVPLTLARMP + +F + E+GM+H GEI L Sbjct: 113 KTSTKEMLATMLADQGRTHAAVASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 RPH+A++TT+A HL F + IA KA I EGLE G LN D + ++LK + Sbjct: 173 ARQARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEE 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + LG++ ++ FG+S ++L + + E + +V++ GK +E+ +G H A N L Sbjct: 233 AERLGVQHLW-FGESGQG-YRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALG 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V+ L D A + L+++ P +GRG R + G ++D+SYNANP SM AA+ Sbjct: 291 ALVCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALE 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ +GR+IA LGDM E+G H +A++ ++ +I + G + L AL Sbjct: 351 VLAATPNPEKGRKIAYLGDMGELGPKEAELHRGMADLKAVSDIDCIHCIGPLMANLHAAL 410 Query: 419 PRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P + HY+ + D L + L GD+V+ K S S G ++++ + E Sbjct: 411 PEARRGKHYATSSDALP-DLAGQLSCGDIVLAKGSLSTGLGKIVDGIRE 458 >gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magneticum AMB-1] gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magneticum AMB-1] Length = 470 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 191/466 (40%), Positives = 267/466 (57%), Gaps = 4/466 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PLWT ++ A+ G G + G+SIDSRSI P + F A++GP++DGHD + A Sbjct: 2 IRPLWTSAEVAAAVAGTPSGAAWE--AQGVSIDSRSIEPGDLFIALEGPNHDGHDHVASA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ + + P+ V D + AL L +A+R RS A I+A+TGSVGKT Sbjct: 60 LANGAAAALVHK--LPRGTAEDAPLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TKEML +ALS T+ +GS+NNH GVPL+LARMP V + IFE+GM+H GEI L Sbjct: 118 GTKEMLALALSDQGATHYSVGSFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLVR 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AVITT+ H+ F+ EIA+AKAEIF+G+E GT L D++ F L + Sbjct: 178 MVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAAR 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG A +L + + + + + + G A N L L Sbjct: 238 TAGLKDIRSFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAVL 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V L ADV+ A AL+ +GRG+R R + G F LIDESYNA+P SMKAAI++L Sbjct: 298 LAVEALGADVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAML 357 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + P GRRIAVLGDM E+G S H +AE + +NI V+ +G L DAL Sbjct: 358 ASVRPAKGGRRIAVLGDMLELGPQGPSLHASVAETVESWNIDLVFTAGTLTAHLHDALAA 417 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ D + +++ + GDVV+VK S R++N L E Sbjct: 418 PRRGGHAADSDAVAALVKAGVRPGDVVMVKGSAGSRMGRVVNALAE 463 >gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] Length = 485 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 192/473 (40%), Positives = 271/473 (57%), Gaps = 8/473 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT +L A G ++ P ++G+SID+R++ + FFAI+G DGHDF+ A+ Sbjct: 3 EPLWTLDAVLAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDAL 62 Query: 62 QKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +GAG VV+ A + +++P G D VL A+ KLA AAR RS+A I+A+TGSV Sbjct: 63 ARGAGAAVVSQARAADLAGAGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSV 122 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT TKE L L++ T+A + SYNNH GVPLTL RMP FG+FE+GM+H GEI Sbjct: 123 GKTGTKEALRHVLAAQGATHASVASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGEIAP 182 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LVRP +AV+TT+ P H+ +F + IA AK EIF GLE G +N D+ FE L Sbjct: 183 LTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEPGGVAVINRDNPHFERL-- 240 Query: 238 KSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + HAL + I SFG+ AD + + + S ++ ++ G + G H A N Sbjct: 241 RDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTALN 300 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + V L AD+ A +L+ P GRG+R L G L+DESYNANPAS++A Sbjct: 301 SLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVRA 360 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++ L+ I G RRIAVLGDM E+G + H DLA ++ + I V+++G + L Sbjct: 361 ALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFVAGPLMAELF 420 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +ALP + + L + + + GD V+VK SNS R++ L + Sbjct: 421 EALPAGTRGVAAASSADLLDAVVAEIRPGDAVMVKGSNSTRMGRIVEALKARY 473 >gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] Length = 492 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 190/464 (40%), Positives = 266/464 (57%), Gaps = 4/464 (0%) Query: 4 LWTFHDLLQAIQG-HSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LWT D A G H G P ++ G+SIDSR++ P + F A+KGP++DGHD++ A+ Sbjct: 10 LWTAADAAAATNGRHPTGRTPGHWMATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDAL 69 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +V+ + ++ PV VDD L AL L ARL ++ +IA+TGSVGKT Sbjct: 70 AHGAAAALVSR-LPGNV-PPEAPVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTG 127 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L + L + T+A GS NNH GVPL+LAR P D +G+FELGM+H GEI L+ + Sbjct: 128 TKEALKLCLDARGPTFATQGSLNNHWGVPLSLARFPADAHYGVFELGMNHAGEIGPLSRM 187 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+P +A+ITT+ HL F+ +E IA AKAEIFEG+ GT LN D+ F L A + Sbjct: 188 VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAART 247 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ I+SFG + AD L + + S + ++G+ ++ G H N L L Sbjct: 248 QGLTRIWSFGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLL 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 VS DV A + LS P +GRG R R AL +G FT+IDESYNA+P S+ AA +VL Sbjct: 308 AVSAAEGDVAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLG 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + P GRRIAVLGDM E+G + S H LA+ V+ G ++ L D LP + Sbjct: 368 KADPGAGGRRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKFLFDRLPAA 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++E L + ++ GDVV+VK S R+++ L+ Sbjct: 428 LRGRHTEDSAALAPLVADAVRAGDVVMVKGSAGSRMSRVVDALV 471 >gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] Length = 465 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 198/459 (43%), Positives = 264/459 (57%), Gaps = 2/459 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + A++ G +P +NGISIDSR+IAP EA+FAIKG +DGH F+ A++ GA L V Sbjct: 1 MAAAMRADRRGALPAA-INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V + P+ VDDVL AL LA A+R R A +IA+TGSVGKT+TKE L Sbjct: 60 VEAAQRDQFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSV 118 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + KT+A + S+NNH GVPL+LAR P D F +FE+GM+H GEI L +VRPH+AVI Sbjct: 119 VDAQGKTHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEITPLVKMVRPHVAVI 178 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TT+ P HL F+GIE IA AKAEIFEG+E G + LN D++ F L ++ LGI I S Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG + AD +L S + ++ G + G H+A N L L S+ AD Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A ALS P GRG R A+ G LIDESYNANPASM AA+ VL G Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 RRIAVLGDM E+G S H LAE ++ + ++ G + L +AL Y+E Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRNLWNALSSGKRGGYAED 418 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + +++ GDV++VK S +++ L + F Sbjct: 419 SVALESQVTAAIRSGDVIMVKGSLGSRMKVIVSALEKRF 457 >gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] Length = 474 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 184/467 (39%), Positives = 255/467 (54%), Gaps = 10/467 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NPLWT + A G IG P V+GISID+R++ P + F A++ DGHDF+ A+ Sbjct: 7 NPLWTSGQAMAATGGMLIG-EPGWTVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAM 64 Query: 62 QKGAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +V G + P V D L L L AAR RS A +A+TGSVGKT Sbjct: 65 EKGASACLVER------GDTGVEPALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KE L S + + SYNNH GVPLTLARMP D +FELGM+H GEIR L+ Sbjct: 119 SVKEALAAVFRSSGPAHWSVKSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSS 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A+IT IAPAHL + +E IA AK+EIF+GLE+ G DD E + + Sbjct: 179 LVRPHVALITRIAPAHLEHLGSVEAIADAKSEIFDGLEQDGVAIYPSDDPLAERIARHAR 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + FG S +A ++ +++ + S + G G H A N Sbjct: 239 HSCAAFLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIF 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISV 359 + D +ALS + GRG+ R AL + G FTL+D++YNANP SM AAI+ Sbjct: 299 AAAAGAGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAA 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L P +GRRIAVLGDM E+G H +LA+ L+ + V G + L DALP Sbjct: 359 LGAADPGPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGRRMKHLHDALP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +++ Y++ G ++S + GDVV++K SN G +++ ++LL+ Sbjct: 419 KTVRAGYAQDAAGGLEQVKSLVRSGDVVLIKGSNGSGLHKIASVLLD 465 >gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] Length = 465 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 182/457 (39%), Positives = 255/457 (55%), Gaps = 17/457 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PLWT ++ A G G Q F G+SID+R+I P + F A+ G DGH+F+ A Sbjct: 3 EPLWTAEEIAAATGGKLAG---QAFRAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 +KGA V+ + + P V D L AL KL AAR R+ +A A+TGSVGK Sbjct: 59 FEKGAAGVIASRQVFG-------PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ + + L+ ++ + SYNNHIGVPLTLARMP +FE+GM+H EIR L+ Sbjct: 112 TSVTQAIMAGLTLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLS 171 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +VRPH VITT+ P H NF G +A AKAEIFEGLE G LN D+ +F+LLK + Sbjct: 172 RMVRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGE 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G T+ +FG + D +L ++ + + ++ +L GK+++ G H N + Sbjct: 232 AERAG-ATVRTFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++ L D+D + AL F P GRG + G FTLIDESYNANP SM +AI+ Sbjct: 291 VLLMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIA 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + GRRI L DM E+G +++FH LAE L I V+ +G + +L DAL Sbjct: 351 TLG--ARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFCAGPLMKSLWDAL 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 P + Y+E+ L + ++ GDVV+VK SN Sbjct: 409 PPTRRGGYAESAAELAPQVVQAVEPGDVVMVKGSNGS 445 >gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] Length = 462 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 180/456 (39%), Positives = 259/456 (56%), Gaps = 16/456 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT ++ +A+ G G V+G+SID+R++ P + F + G DGHDF+ AV Sbjct: 3 DALWTADEIAEAVGGQVAGDF---AVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAV 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 GA V+ ++ P V D AL L VAAR R+ + A+TGSVGKT Sbjct: 59 ANGAAGVLAAR-------AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + + L K +A + SYNNHIGVPLTLARMP D + +FE+GM+H GEI L+ Sbjct: 112 SVTRAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSG 171 Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VRPH ITT+ P H+ NFS G +A AKAEI GL+ G LN D+ +F+ LK ++ Sbjct: 172 FVRPHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEA 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +G T++SFG++ A +L ++ + + V L+G+++ H G H N L Sbjct: 232 EKVG-ATVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCV 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ L +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ Sbjct: 291 LLMLEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKT 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GRR+ L DM E+GE S FH +LAE ++ N+ V+L+G H+ +L +ALP Sbjct: 351 LG--ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALP 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + Y+E + L + ++ GDVV+VK SN Sbjct: 409 PTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGS 444 >gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] Length = 475 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 267/467 (57%), Gaps = 4/467 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLW+ L+ A+ G + + G+SID+R++ + FFAIKG DGH+F+ A Sbjct: 4 EPLWSGLALVGALHARVSGALAR-EATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAF 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KGA V++ A S + P+ V DV +L L AR RS A I AITGSVGKT+ Sbjct: 63 EKGAAAAVIDEAHAAEF-SGAGPLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M + LS +T+A + SYNN GVPLTLARMP FG+FELGM+H GEI L Sbjct: 122 TKDMTRLMLSRFGETHASVASYNNQWGVPLTLARMPAASRFGVFELGMNHAGEITGLVAQ 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+AV+T +A HL +F+ +E IA AKAEIF L+ G +N DD+ +E L A + Sbjct: 182 VRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALD-GGVAIINRDDATYERLAAAAAP 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I+SFG+S+ A+ +L +K + +E + GK + G H+A N L L Sbjct: 241 TA-GHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALL 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I ++ DV+ A L+ F P GRG R + G FTLIDESYNANP SM++A +L Sbjct: 300 IAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSMRSAFELLG 359 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +P GRRIAVLGDM E+G H +LA L+ ++ +G + +L A P + Sbjct: 360 ATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAGPLMASLYYAAPNA 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + T L + ++L GDVV+VK SNS R++ + ++F Sbjct: 420 MRAAHRRTALELEEAVLAALRAGDVVMVKGSNSSRMSRIVAAVRQKF 466 >gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] Length = 466 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 181/463 (39%), Positives = 260/463 (56%), Gaps = 10/463 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT ++ A G + G V+G+SID+R+IAP + F A+K DGHDF+ A++K Sbjct: 3 LWTANEAAAATGGRAQG---DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V+ V P+ VDDV L L A+R R+ A ++A+TGSVGKT+TK Sbjct: 59 GAGAALVSR--VPEGVPADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L R Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAKPAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++TT+A HL F +E IA KA I EGLE G LN D + +L+ + LG Sbjct: 177 PHVAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEPGGVAVLNADIAEAHVLRDVASDLG 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + FG+S + D+ L E++ G+ +E+ +G H A N L L V Sbjct: 237 VSARW-FGESAS-DYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACV 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L AD A +L+++ P +GRG R L G TL+D+SYNANP SM AA++VL+ Sbjct: 295 EALGADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAAT 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G+GRRIA GDM E+G H LA++ ++ I + G + AL +ALP Sbjct: 355 P--GQGRRIAYAGDMKELGPQEVELHAGLADLDAVKGIDKIHCIGPLMRALHEALPEGKR 412 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +T + S + GD+V+ K S S ++++ + E Sbjct: 413 GGWYQTSAEAVPGLASEIQGGDIVLAKGSLSMALAKIVDGIRE 455 >gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 467 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 198/476 (41%), Positives = 268/476 (56%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M PLWTF +L A+ G+ P+G V GISID+R++ + F A+K DGHDF Sbjct: 1 MQPLWTFSEL-SAV----FGVAPEGGTDQPVTGISIDTRTLQAGDLFVALKD-QRDGHDF 54 Query: 57 ILHAVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIA 112 + A + GA +V+ V A G+L F V D L AL L AAR R A +IA Sbjct: 55 VSPAFKAGAAAALVSEGYVRRAEDGAL----FRVSDTLKALEALGRAARDRLSPDARVIA 110 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TGS GKT TKEML LS + T+A SYNNH GVPLTLARMP + FG+FE+GM+H Sbjct: 111 VTGSAGKTGTKEMLRACLSHLGVTHASEKSYNNHWGVPLTLARMPRETRFGVFEIGMNHA 170 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEIR LT +VRPH A+ITT+ HL +F +E IA AK EIFEGL GT + +D+ Sbjct: 171 GEIRPLTKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNPHA 230 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 LKA + LG K + +FG S AD + S + V+L + + + G H+ Sbjct: 231 ARLKAIAERLGAKAV-TFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMPGRHI 289 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A+N L + + AD++TA+ L+ P GRG R L+ G LIDESYNANPAS Sbjct: 290 AENALAVAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYNANPAS 349 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+AA++ L+ + RRIAVLGDM E+G + H L + + I ++ G H+ Sbjct: 350 MRAALATLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIFACGPHMK 409 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L DALP+S Y++T L + S L GD V+VK+SN ++ L ++ Sbjct: 410 GLYDALPKSKRGGYAQTSSLLQPAVLSELRGGDAVMVKASNGTRLGAVVEALKSKY 465 >gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis HTCC2503] gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis HTCC2503] Length = 478 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 266/479 (55%), Gaps = 26/479 (5%) Query: 3 PLWTFHDLLQAI--------QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 PLWT +++ A +G ++G P V G+S D+RS+A + F A+ G DGH Sbjct: 5 PLWTVREIIAATGAALRGAGEGETLGERP---VYGLSFDTRSLAKGDLFIALSGAR-DGH 60 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 DF A KGA ++ T A + S ++P VDD L AL LA AAR R ++A+T Sbjct: 61 DFAQAAADKGAAAALL-THRPADL-SEALPGLMVDDPLRALEDLARAARQRCFGALVAVT 118 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTKEML ALS + + +A S+NNHIGVP++LA +P FG+FE+GM+H GE Sbjct: 119 GSVGKTTTKEMLRAALSPLGEVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAGE 178 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L LVRPH+A+IT++A HL NFS ++ IA AKAEI G+ + G L D+ ++E Sbjct: 179 ITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSDNPYYER 238 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGI-G 289 L +++ G++ I FG A + W S E+ + G+ V+ G+ G Sbjct: 239 LVSRARECGVERIVPFGFGDGARPGI--WGTAPVMIEGGSRTEIAIAGER-HVLELGVPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L + + L D+++ I+ L+ F GRG R+ + ++DESYNAN Sbjct: 296 THQVSNALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNAN 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM +A++ L + P GRR+AVLG+M E+G S + H LA + + VWL+G Sbjct: 356 PTSMASALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGS 415 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + L+DALP ++ L + SL GDVV+ K SN+ G I LLE F Sbjct: 416 GMAPLRDALPADRVAEWAPKAPDLLSNLVDSLEQGDVVLFKGSNAAG----IGALLEAF 470 >gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] Length = 475 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 258/452 (57%), Gaps = 10/452 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + + A G +G Q +G++ID+R++ P + F A+ G DGHD++ A+Q Sbjct: 5 LWTRAEAVVATGGTPLGRDWQ--ASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQT 62 Query: 64 GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA +V+ D+ AS P+ V D L L +L AAR RS A I A+TGSVGKT Sbjct: 63 GASAALVSRRPADLAASA-----PLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +KEML AL++ T+A G+ NNHIG PL+LAR D F +FELGM+H EIR L+ Sbjct: 118 GSKEMLAAALAAYGTTHASKGNLNNHIGAPLSLARFSRDAAFAVFELGMNHPEEIRPLSR 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH A+IT + H F+GIE+IA AKAEIF+GLE GT+ LN D+S F L + Sbjct: 178 LVRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHAG 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I+ I FG +A+ +L + ++ ++ G+ M GIG H A N L Sbjct: 238 RLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGVA 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D + AL GRG + + +L G TLIDESYNA+P +++AA++V Sbjct: 298 ATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAVF 357 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ P RRIAVLGDM E+G + H LAE + V+L G + AL ALP Sbjct: 358 AETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFLVGPEMAALAAALPA 417 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ ++++ + L + +++ GDVV+VK S Sbjct: 418 ALVAGHADSSEALAATVAAAVAPGDVVLVKGS 449 >gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] Length = 462 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 180/452 (39%), Positives = 255/452 (56%), Gaps = 16/452 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT ++ QA+ G G G+SID+RS+ + F + G DGHDF+ AV Sbjct: 5 LWTADEIAQAVGGQVAGDF---AATGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVAN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 GA V+ + A P V+D AL L VAAR R+ + A+TGSVGKT+ Sbjct: 61 GAAGVLAAQPVDA-------PAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSV 113 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + L K +A + SYNNHIGVPLTLARMP D + +FE+GM+H EI L+ V Sbjct: 114 TRAVEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSFV 173 Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +PH ITT+ P H+ NF G +A AKAEIF GL G LN D+ +F+ LK ++ Sbjct: 174 QPHAVAITTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAEK 233 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G T++SFG+++ A +L + E++ + V L+G+++ G H N L L Sbjct: 234 VG-ATVWSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLL 292 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ L Sbjct: 293 MLEALDVPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLG 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + GRRI VL DM E+GE S FH +LAE ++ N+ V+L+G H+ +L +ALP + Sbjct: 353 --ARKVAGRRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSLWEALPPT 410 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 Y+ + L + ++ GDVV+VK SN Sbjct: 411 RRGGYAVVTEKLTAELAGAIRPGDVVMVKGSN 442 >gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] Length = 469 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 183/444 (41%), Positives = 258/444 (58%), Gaps = 16/444 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIP 84 V+GISID+R++ P + F A+K DGHDF+ A+ KGAG LV D VA+ P Sbjct: 24 VSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVTHRPDGVAA----DAP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V+DV AL L AR R++A +IAITGSVGKT+TKEML L+ +T+A + SYN Sbjct: 79 LLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAAVASYN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+A HL F + Sbjct: 139 NHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFEDVA 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA KA I EGLE G LN D ++L A++ LG+ + FG+S +++L K Sbjct: 199 GIAREKAAIMEGLEPGGVAVLNADIDEAQVLAAEAQGLGVAHQW-FGESAT-EYKLLSTK 256 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 E + EV+ + M++ +G H A N L L V+ ADV A + LS++ P + Sbjct: 257 ISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGALACVAAAGADVQRAAQVLSLWSPVQ 316 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMC 379 GRG R A+ G L+D+SYNANP SM AA++VL+ G +GR+IA LGDM Sbjct: 317 GRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVLAATPDLGADAGVKGRKIAYLGDMG 376 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQ 438 E+G + H LA++ +L I + G + L ALP + HY+ + D + + Sbjct: 377 ELGPQEVALHAGLADLAALETIDTIHCIGPLMAHLHQALPAAQRGFHYATSAD-VLPDLP 435 Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462 S L GD+V+ K S S G ++++ Sbjct: 436 SQLGCGDIVLAKGSLSAGLSKIVD 459 >gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisA53] gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 480 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 199/470 (42%), Positives = 265/470 (56%), Gaps = 9/470 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A++ G P V G+SIDSR++ P +A+FAIKG +DGH F+ A++ Sbjct: 6 LWTLDAMASAMRAERSG-APSDVVFGLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAALEA 64 Query: 64 GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + VV D A+ L I VDDVL AL LA AAR R + +IA+TGSVGKT Sbjct: 65 GAAVAVVAREQRDQFAADARLLI----VDDVLEALRDLARAARARLEGQVIAVTGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L ++ +T+A + S+NNH GVPL+LAR P F +FE+GM+H GEI L Sbjct: 121 STKEALRAVFAAQGETHASVASFNNHWGVPLSLARCPASARFAVFEIGMNHAGEIEPLVG 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A+ITT+ P HL F GIE IA AKAEIF GLE G + LN D++ F L + Sbjct: 181 LVRPHVAIITTVEPVHLEFFDGIEAIADAKAEIFAGLESGGAVVLNRDNAQFTRLAECAE 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A GIK I SFG AD +L + S + ++ G+++ G H A N L L Sbjct: 241 ARGIKRIVSFGADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISV 359 + AD+ A LS P GRG R R ++ G TLIDESYNANPASM AA++V Sbjct: 301 AAAELAGADLALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNV 360 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +P +GRRIAVLGDM E+G S H L + I V+ G + L DAL Sbjct: 361 LGGAAPGPQGRRIAVLGDMLELGPRSAELHAGLNAAVKANAIDTVFCCGPMMRHLWDALS 420 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + ++ GDV++VK S +++ L + +P Sbjct: 421 TGKRGGYAENSAALESHVVGAVRAGDVIMVKGSLGSRMKTIVSALEKRYP 470 >gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] Length = 463 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 248/442 (56%), Gaps = 11/442 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 VNGISID+R+I P + F A+K DGHDF+ A++KGAG +V+ + VA P Sbjct: 23 VNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSHIPEGVAE----DAP 77 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V+DV AL L A R R+KA ++A+TGSVGKT+TKEML L+ +T+A + SYN Sbjct: 78 LLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHAAVASYN 137 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH GVPLTLARMP D ++ + E+GM+H GEI L+ RPH+A++TT+A HL F + Sbjct: 138 NHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVA 197 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA KA I EGLE G LN D +L+ + G+ T + FG++ + D+ L++ + Sbjct: 198 GIAREKAAIIEGLEPGGIAVLNADLEETPVLRDVAQDAGVATRW-FGQTSD-DYCLQEAQ 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + + +G H A N L + L AD++ A+ L + P + Sbjct: 256 LSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAIEALGADLELALAGLQGWSPVK 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG R+ L G T++D++YNANP S+ AA++VL+ EGRRIA L DM E+G Sbjct: 316 GRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAATPT--EGRRIAYLADMKELGPE 373 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H LA+ +L I V G + L ALP + + ET + + + G Sbjct: 374 EARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPENKRGTWVETSAEAASALPAQIQGG 433 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 DVV+ K S S R+++ + E Sbjct: 434 DVVLAKGSLSMAVARVVDAIRE 455 >gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium nodulans ORS 2060] gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium nodulans ORS 2060] Length = 494 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 183/446 (41%), Positives = 254/446 (56%), Gaps = 4/446 (0%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LS 82 V G+SID+R++ + FFAI+G DGHDF+ A+ +GAG VV+ A + + Sbjct: 36 VAGLSIDTRTLKVGDLFFAIRGETRDGHDFVRDALARGAGAAVVSQARAAELAGSGPLVV 95 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P G D VL A+ LA AAR RS A ++A+TGSVGKT TKE L L++ T+A + S Sbjct: 96 VPEAGDDPVLAAMRALAAAARARSAARVLAVTGSVGKTGTKEALRHVLAAQGTTHASVAS 155 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNH GVPLTL RMP FG+FE+GM+H GEI L LVRP IA++TT+ P H+ +F Sbjct: 156 YNNHWGVPLTLGRMPAGSAFGVFEIGMNHAGEIAPLARLVRPEIAIVTTVEPVHIEHFRS 215 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + IA AK EIF GLE G LN D+ FE L A + A I SFG+ AD + + Sbjct: 216 LSGIADAKGEIFCGLEPGGIAILNRDNPHFERLSAHALASRAGRIVSFGEHPQADVRAER 275 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S ++ + G + G H A N L + V L AD+ A +L+ HP Sbjct: 276 IVMRPDLSIVDASVLGVPVTYQLGTPGRHTALNSLAVMAAVHALGADLALAALSLAQLHP 335 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GRG+R L +G L+DESYNANPAS++AA++ L+ I G+GRRIAVLGDM E+G Sbjct: 336 PVGRGERTLLRLREGEALLVDESYNANPASVRAALATLAGIEIRGQGRRIAVLGDMLELG 395 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H +LA + + I V+ +G + L ++LP + T L + S + Sbjct: 396 SEAPRLHRELAASVEQHGIDLVFAAGPMMAELFESLPAGTRGVAAPTSAELLDAVLSEIR 455 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468 GD V++K SNS R++ L + Sbjct: 456 PGDAVMIKGSNSIRMGRIVEALKARY 481 >gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 464 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/440 (40%), Positives = 245/440 (55%), Gaps = 13/440 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPV 85 +G+SID+R++ P + F A+K DGHDF+ A++KGA +V D VA+ P+ Sbjct: 24 SGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALVTHIPDDVAA----DAPL 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDDV AL L AAR R KA ++ +TGSVGKT+TKEML LS +T+A + SYNN Sbjct: 79 LIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASYNN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H GVPLTLARMP D ++ + E+GM+H GEI L RPH+A++TT+A HL F + Sbjct: 139 HWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLARQARPHVALVTTVAAVHLEAFESVAG 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA KA IFEGLE GT +N D ++L+ + G I FG++ + D++L Q Sbjct: 199 IAHEKAAIFEGLEAGGTAIVNADLDHTDILRTCAARHG-AVIVDFGRTAS-DYRLTGVTQ 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + G+ + G H A N L L L D+D AI L+ + P G Sbjct: 257 SPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAACVALGVDLDAAIAGLAKWAPVTG 316 Query: 326 RGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 RG R R AL + G L+D+SYNANP SM AA+ VL+ RRIA LGDM E+G Sbjct: 317 RGVRERLALPDGGQIELLDDSYNANPTSMAAALDVLAAAQ---GARRIAFLGDMKELGPQ 373 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ H LA+V ++ I V G + AL +ALP + ET D + + + G Sbjct: 374 ERAMHAGLADVPAMARIDKVHCIGPLMRALHEALPEDKRGLWFETSDEMARHLPGLVQAG 433 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D V+ K S S R+++ L Sbjct: 434 DAVLAKGSLSMALARIVDGL 453 >gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 470 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 190/479 (39%), Positives = 262/479 (54%), Gaps = 29/479 (6%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-- 57 MN PLWT + A+ G G P G+SIDSR++ P + F A++GP++DGHD + Sbjct: 1 MNRPLWTSAEAAAAVAGTPSG--PAWEARGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS 58 Query: 58 ----------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +H + KG V D P+ V D + AL L VA+R RS Sbjct: 59 ALAGGAAGALVHKLPKG-----VQDDA---------PLILVRDTMTALQDLGVASRARSS 104 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A I+A+TGSVGKT +KEML +ALS T+ +GS+NNH GVPL+LARMP + IFE+ Sbjct: 105 AHIVAVTGSVGKTGSKEMLALALSDQGVTHYSLGSFNNHWGVPLSLARMPAGSRYAIFEI 164 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 GM+H GEI L +VRPH+AVITT+ H+ F+ EIA+AKAEIF+G+E G L Sbjct: 165 GMNHPGEITPLVRMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPR 224 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D++ F L + GI I SFG + +L + + + L + + Sbjct: 225 DNAHFAFLAEAAAKAGITHIRSFGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGV 284 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G A N L L V L ADV+ A AL+ +GRG+R R ++ G F LIDESYN Sbjct: 285 AGRQWATNSLAVLLAVEALGADVNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYN 344 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P SMKAAI+ L+ + P GRRIAVLGDM E+G H +AE + +NI V+ + Sbjct: 345 ASPVSMKAAIAALASVKPAKGGRRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTA 404 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G L DAL ++ D + +++++ GDVV+VK S R++N L E Sbjct: 405 GILTAHLHDALAEQRRGGHAADSDAVSALVKAAVRPGDVVMVKGSAGSRMGRVVNALAE 463 >gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] Length = 477 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 181/477 (37%), Positives = 251/477 (52%), Gaps = 30/477 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G G G+SID+R+IAP + F A+K DGHDF+ A++K Sbjct: 3 LWTAQEAAAATGGQVAG---DWDATGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ G + VDDV L KL +AAR R +A ++A+TGSVGKT+TK Sbjct: 59 GAAAALVSH---VPEGVDPARLLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L + K +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ + R Sbjct: 116 EMLRCVLGAQGKVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSRMAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++T +APAHL+ F +E IA K IFEGLE GT +N D +L+ + A Sbjct: 176 PHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMAQARA 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 I FG++ ++ + C ++W L ++ G H A N + Sbjct: 236 AHVI-DFGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVP------GRHFAVNGM 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353 L + L D A+ AL + P GRG R L+ Q LID++YNANPAS+ Sbjct: 289 GVLAVAHALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASL 348 Query: 354 KAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A++ VL+ P GRRIA +GDM E+GE + H LA S+ I V Sbjct: 349 GASLEVLAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHCV 408 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + L ALP H++E + ++ L GDVV+VK S S R+++ + Sbjct: 409 GPLMRELWTALPYEKRGHWTEDSRAMAARVRHDLDAGDVVLVKGSLSMALSRVVDAI 465 >gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] Length = 478 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 19/466 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT ++ A +G G V+GISIDSR +A + F A+K DGH+++ A++K Sbjct: 5 LWTSKEIAAATKGEMTG---DWKVSGISIDSREVAKGDLFVALK-DLRDGHEYVSSAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++++D +P VD+ L AL L +AAR RSKA AITGSVGKT+ K Sbjct: 61 GAAGALISSDCG------DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ S K + + S+NNH GVPLTLARMP D IFE+GM+ GEI + +VR Sbjct: 115 EMIAQIFRSKGKAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRSRMVR 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HAL 242 P IA++T IA AHL IE +A K++IF GLE G L +D FF+ +KA+ Sbjct: 175 PQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMKARVFDCQ 234 Query: 243 GIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++ SFG +++ AD +L ++ S + G+++ + IG H N ++ + Sbjct: 235 PTASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAVLAIL 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A L + P GRG + G TL+D+SYNANP SM+A ++ L Sbjct: 295 VGRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGLAALG 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 Q S GR+IA+LG+M E+G + H DL + + +S ++L+G +L L+D+ + Sbjct: 355 QRS----GRKIAILGEMRELGPDADKLHADLKDPILKAGVSELFLAGDGLLPLRDSCSNN 410 Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + V ++ T L L + SL+ GDVV++K SN+ G + N L Sbjct: 411 ENEPGVCWASTSKELVLMVNKSLISGDVVLIKGSNASGIASVANAL 456 >gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] Length = 477 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 187/485 (38%), Positives = 261/485 (53%), Gaps = 31/485 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G + +G+SID+RSIAP + F A+K DGHDF+ A++K Sbjct: 2 LWTAAEAAAATGGR---VASDWVASGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEK 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + S + VDDV L L AAR R ++A+TGSVGKT+TK Sbjct: 58 GAAAALVSR--IPEGVDNSEKLLLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS +A SYNNH GVPLTLARMP D DF + E+GM+H GEI L + R Sbjct: 116 EMLRTVLSEQGTVHAAEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++T +APAHL+ F +E IA KA IFEGLE G N D + +L+ K+ Sbjct: 176 PHVAMVTIVAPAHLAAFENLEGIAREKASIFEGLEPDGIAIYNGDLAVSGILRDKAAETA 235 Query: 244 IKTIYSFGKSKNADFQLRKWK---QC---SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K+I SFG++ +L + C + ++W V L K M G H A N + Sbjct: 236 RKSI-SFGETAGTHHRLTSVQVMDACTVATGRAW-RVPLLFKVMVP-----GRHFAMNAM 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYNANPASM 353 + ++S L D A+ AL+ ++P GRG R + L ++ LID++YN+NPAS+ Sbjct: 289 GVMAVISALRLDRALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASL 348 Query: 354 KAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 AA+ VL+ H +GRRIA LGDM E+G + H LA + I V Sbjct: 349 GAALEVLAAAGTHDHVGRRDKGRRIAYLGDMKELGAQEVTLHEALATSPWIEKIDLVHCV 408 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL--L 465 G + AL LPR H++ET D + + L GDVV+ K S S G R+++ + + Sbjct: 409 GPLMRALWMKLPREKRGHWTETADKMAEGVVRDLDAGDVVLAKGSLSMGLGRVVDAIRKM 468 Query: 466 EEFPA 470 + PA Sbjct: 469 RQAPA 473 >gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingopyxis alaskensis RB2256] gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingopyxis alaskensis RB2256] Length = 459 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 182/470 (38%), Positives = 244/470 (51%), Gaps = 23/470 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PLWT + QA G I F V+G++ DSR + + F A+KG + DGH FI A Sbjct: 3 TPLWTARTIAQATGG----IASADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V T ++ P V D ALN L A+R RS II +TGS GKT Sbjct: 59 IAAGAAGIVCET-------AIDHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKT 111 Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L AL + K + + SYNNH+GVPL+LARMP DFGIFE+GM+H GE+ L Sbjct: 112 GTKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAAL 171 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRPH+A++TTIAPAH+ F E IA AK EIFEGLE GT + +D + L+AK Sbjct: 172 TRIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARLRAK 231 Query: 239 S--HALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + HA I SFG ++ AD + W S + Q+Q + G H N Sbjct: 232 AEQHA---AHIVSFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVAN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L V + D+ A A + GRG R+R A+ G +IDESYNANPASM A Sbjct: 289 SLAVLAAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASMAA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I Q++ R++A+LG M E+G +++H LA L + L G + L Sbjct: 349 TI---GQLAGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFALLVGEEMAPLA 405 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 AL I + + + GD V+VK SNS G ++ L+ Sbjct: 406 KALEGRIDFAHVPAHPDATARLGGLIRPGDAVLVKGSNSVGLSHVVTALI 455 >gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hyphomonas neptunium ATCC 15444] gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 256/469 (54%), Gaps = 15/469 (3%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN PLWT D+ A G + ISID+R++ + F A+K DGHDF+ Sbjct: 1 MNRPLWTSSDMELATGGDASAAFE--VTGSISIDTRTLQKGDLFVALKD-QRDGHDFVEA 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA +V+ M PV V+DVL AL ++ +AAR+R A A+TGS GK Sbjct: 58 AFKAGAAGALVSRPMPGG------PVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KEML + + + S+NNH GVPLTLARMP + +FE+GM+ GEI + Sbjct: 112 TSVKEMLAQIYRAHGPAHWNVKSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPRS 171 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH ++T IA AHL +E IA KA IF GLE GTI L DD+F + L ++ Sbjct: 172 QMVRPHTGIVTCIAAAHLQGLGSVEGIAEEKANIFAGLESGGTIILPADDTFLDYLSERA 231 Query: 240 HAL-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG S +A ++ ++ S +EV + G+ + V + +G H AQN+ Sbjct: 232 RSFCPTGNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVAA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357 L S + V +ALS + P GRG L G TLID++YNANPASM+AA+ Sbjct: 292 ALLAASQASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASMRAAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+Q RR+A LGDM E+G+ S + H LA + + V+L G + L +A Sbjct: 352 KGLAQ---RAGTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLVGAEMQHLSEA 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 LPR + + T D L+ +Q +L GDV+++K SN+ G R+ + L + Sbjct: 409 LPRDLQQVSAPTADELWNQLQKALRAGDVLLIKGSNASGMGRIADRLRQ 457 >gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] Length = 462 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 254/462 (54%), Gaps = 11/462 (2%) Query: 4 LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LW+ D ++A G S I V NGISID+R++ + F A+K DGH++I A + Sbjct: 3 LWSSKDAVKATSGVSRINWV----ANGISIDTRTLKMGDLFVALK-DQRDGHEYIKIAFE 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V+ V ++P+ VDDVL AL +A AR R++A +I ITGSVGKT+T Sbjct: 58 NGAAAALVSR--VPDGLDENLPLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTST 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L + KT+A SYNNH GVPLTLARMP + DF + E+GM++ EIR L L Sbjct: 116 KEMLKSILIANGKTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAKLA 175 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + +A++ +AP HL F IE IA AKAEIFE L + +N D S F++L + Sbjct: 176 KLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQKV 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K I +FG + AD++L + ++++ ++ G H A N + Sbjct: 236 RSKLI-TFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + S + GRGKR + G LIDESYNANP SM+AAI+VLSQ Sbjct: 295 AEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLSQ 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 GR++A+LGDM E+GE FH +LA++ S+ I ++L G + LK LP Sbjct: 355 --SEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVGPMMRCLKKELPSQK 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + E++D L I++ ++ D ++VK SN +++ L Sbjct: 413 QCLWFESVDALIKEIENLVIINDTIMVKGSNYTKVSKIVEKL 454 >gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 181/476 (38%), Positives = 257/476 (53%), Gaps = 21/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A G + G+SID+RSI P E F A+K DGHDF+ A Sbjct: 1 MAVLWTSIDAAVATGGRATRPF---MATGLSIDTRSIRPGEMFVALKD-VRDGHDFVADA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ + S P+ V DVL AL L A R R++A +IA+TGSVGKT Sbjct: 57 LKKGAACALVSR--IPEGCSEEDPLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS+ + +A S+NNH GVP+TLARMP + DF + E+GM+H GEI L Sbjct: 115 STKEMLRAVLSAQGRVHAAEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAK 238 + RPH A+ITT+A AHL F +++IA KA IF+GLE GT + + + L AK Sbjct: 175 MARPHAAMITTVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAK 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + +FG + +D++L K + + ++ + GK M G H A N L Sbjct: 235 ARA---GQVVTFGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALG 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMK 354 L + + AD A + ++ P GRG R R L+ F L D+++NANPASM+ Sbjct: 292 VLALARAVGADPAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASME 351 Query: 355 AAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A + VL+ P GRR+A+LGDM E+G H +AE+ ++ +I V L+G Sbjct: 352 AGLEVLAGQVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAG 411 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + GDVV+VK S +++ L Sbjct: 412 PRMRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKGSKVSLVVDAL 467 >gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 464 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 174/442 (39%), Positives = 244/442 (55%), Gaps = 14/442 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 V+GISID+R+IAP + F A+ DGHDF+ A+ KGAG +V+ + V G L + Sbjct: 23 VSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSRIPEGVGEDGRLLL- 80 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDDV L L A R R++A ++A+TGSVGKT+TKEML L + +T+A + SYN Sbjct: 81 ---VDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVASYN 137 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+A HL F + Sbjct: 138 NHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFDDVA 197 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA KA I EGLE G LN D + ++L+A A G + + SFG++ D++L + Sbjct: 198 GIAREKAAIMEGLEPGGVAVLNADIAEADILRAA--ARGARQL-SFGRAAQ-DYRLTGVE 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + G H A N L L L AD +++ L + P + Sbjct: 254 VADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALGADAGQSLQGLERWTPYK 313 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG R +L G TL D+SYNANP S+ AA+ VL+ RR+A LGDM E+G Sbjct: 314 GRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTPGT---RRVAFLGDMKELGPE 370 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H LA + ++ + V G + AL DALP + ++ET + + + + G Sbjct: 371 ELPLHAGLAALPAMERVDQVHCIGPLMRALFDALPEAKRGRWTETGAEMLAELPALVAPG 430 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D V+VK S S G RL++ L E Sbjct: 431 DAVLVKGSLSMGLARLVDGLRE 452 >gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Asticcacaulis excentricus CB 48] gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Asticcacaulis excentricus CB 48] Length = 462 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 173/457 (37%), Positives = 246/457 (53%), Gaps = 12/457 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PLWT +LL+A G G+ GI+ DSR + P + F A+ G DGHDF+ Sbjct: 1 MTPLWTGTELLKATGGTFAGLSGDASALHATGITFDSRQVQPGDIFLALSGVR-DGHDFV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A +GA + + P V DVL AL KL AR R+ A A+TGSV Sbjct: 60 GQAFAQGAVCALTRKPVDGG------PCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSV 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ +M+ ALS + ++ + S+NNHIGVPLTLARMP D + +FE+GM+H EI Sbjct: 114 GKTSVTQMVMAALSRAGRAHSAVKSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITP 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ LV P +ITT+ H NF G E + AKAEIF+GL+ G LN D+ +F L Sbjct: 174 LSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGGLAILNADNHWFAELN 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ +G K + FG+++ AD L + ++ + L G+ + G H A N Sbjct: 234 ERASEMGAK-VQCFGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNA 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L + L D T + ALS F +GRG ++ A+ G TLIDESYNANP SM A Sbjct: 293 LSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVAT 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ++ L+ GRRIAV+ DM E+G H LA L+ + V+++G + AL D Sbjct: 353 LNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAGPLMRALWD 412 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 LP ++ Y+ T L ++++L D+V++K SN Sbjct: 413 VLPEALRGAYAATAAELLEPLKTALRPNDIVMIKGSN 449 >gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 474 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 185/464 (39%), Positives = 249/464 (53%), Gaps = 23/464 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT D + A G G+SID+R+IA + F A+K DGH+F+ A Sbjct: 1 MNALWTSQDAIAATGG---ACTVDWVAEGVSIDTRTIAKGDLFVALK-DQRDGHEFVAQA 56 Query: 61 VQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + GA +V+ D VA P+ V +VL AL L AAR R+ A ++A+TGSVG Sbjct: 57 LAAGASAALVDHIPDNVAP----DAPLLIVPNVLTALEALGTAARARTSAKVVAVTGSVG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEML + LS+ K +A SYNNH GVPLTLARMP D DF + E+GM+H GEI L Sbjct: 113 KTSTKEMLRVMLSTQGKCHAAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L +P I +ITT+A HL+ F I+ IA K+ +F GL + G +N D ++L Sbjct: 173 AKLTQPDIGLITTVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVLMNA 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + KTI FG +F L +Q+ + Q + G H A N L Sbjct: 233 AQG---KTILRFGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALG 289 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG----FFTLIDESYNANPASMK 354 L VS L AD+ A L+ + P GRG++ L++G TLID++YNANP S+ Sbjct: 290 ALASVSALGADMGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVA 349 Query: 355 AAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AAI +LS +P +GRRIAVLGDM E+G H LAE+ + I V G Sbjct: 350 AAIEILSVSNPIDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVG 409 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + +L A+P S H+ ET L ++S L GDVV+VK S Sbjct: 410 PLMKSLWSAVPNSKRGHWFETSSKLAELMKSQLDAGDVVLVKGS 453 >gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 175/447 (39%), Positives = 244/447 (54%), Gaps = 17/447 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+SID+R++ P + F A+ DGHDF+ A+ KGAG +V+ + + P+ Sbjct: 23 VSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVS--RIPEGVRTTDPLL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+DVL AL +L A R R++A ++AITGSVGKT+TKEML L + +A SYNNH Sbjct: 80 VVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAAEASYNNH 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPLTLARMP + DF + E+GM+H GEI LT L RPH+A+ITT+A HL F +E I Sbjct: 140 WGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPHVALITTVAAVHLEAFENVEGI 199 Query: 207 ASAKAEIFEGLEKTGTIFL--NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 A KA I+EGLE G L D + L +A A ++T FG QL Sbjct: 200 AREKAAIYEGLEPAGVAILPGEIDTTTILLAEADKRAGRVET---FGLGAANTLQLTHLD 256 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++++ + V G H A N + LG V L DV A + L+ + P Sbjct: 257 LTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRALGGDVTLAARDLTFWTPPA 316 Query: 325 GRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLSQISP-HG-----EGRRIAVL 375 GRG R L+ + TLID+++NANP SM AA+ VL+ P HG GRR+AVL Sbjct: 317 GRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAATKPAHGHGRIARGRRVAVL 376 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G + H LA++ L I V +G + L ALP +SE + L Sbjct: 377 GDMLELGPDEAALHAGLADLDHLDAIDQVHCAGPLMHHLWAALPAEKQGRWSEKAEDLAA 436 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + GDV++VK S R+++ Sbjct: 437 EAHNLIDAGDVLLVKGSKGSRVSRVVD 463 >gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodospirillum rubrum ATCC 11170] gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodospirillum rubrum ATCC 11170] Length = 488 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 172/439 (39%), Positives = 240/439 (54%), Gaps = 4/439 (0%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+ IDSR++ + F A+ G DGH + A+ GA +V+ + A I + + V Sbjct: 37 TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR-IPAGIATDRLLV-- 93 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L L LA A+R R ++ +TGS+GKT TKEMLT AL + +A G+ NNH Sbjct: 94 VEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNNHF 153 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLTLARMP D D + ELGM+H GE+ L L RPH+A+IT +A HL F +E IA Sbjct: 154 GLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVEAIA 213 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AKAEI EG+E GT+ LN D+ FFE L+ + A GI SFG AD ++ + Sbjct: 214 DAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCAVDA 273 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + + G H A N L L +V L D+ +A L+ P GRG Sbjct: 274 NGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPRGRG 333 Query: 328 KRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R +L G +ID++YNA+P S+ AA++ LS P GRRIAVLGDM E+G + Sbjct: 334 RRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGPQAA 393 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H DLA++ I V+ +G + L DALP S ++ D L + ++L GDV Sbjct: 394 KLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRPGDV 453 Query: 447 VVVKSSNSCGFYRLINLLL 465 V+VK S R + LL Sbjct: 454 VMVKGSKGSLVSRTVTALL 472 >gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 463 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 174/467 (37%), Positives = 255/467 (54%), Gaps = 16/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW + +A++G + V ++ DSR I + FFA+KG DGH+++ A Sbjct: 1 MKALWQSEAIARAVKGTASADFS---VRNVAFDSREIQKGDLFFALKGTESDGHNYVEAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA VV + + P VDD AL LAVA+R R+ II ITGSVGKT Sbjct: 58 FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +TKE L +AL + +K + + SYNNH+GVPL+LARMP + FGIFE+GM+H GE+ L Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV+P +A+IT IAPAH + F+ IA AK+EIFEGL G + +D + +LL AK Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + I SFG + A + + ++ + + ++ + + H N + Sbjct: 231 AQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAM 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L +V + D+ A AL +GRG+R+ + G +IDESYNANPASM A I Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L P + RRI +LGDM E+G+ S ++H LA+ LS + HV L G + AL+++ Sbjct: 350 KALEN-EPK-DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L I E D + L D+++VK SNS G +++ L Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSAVVSSL 454 >gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 464 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 176/462 (38%), Positives = 254/462 (54%), Gaps = 12/462 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A +G S G+SID+R++ P + F A+K DGHDF+ A++K Sbjct: 3 LWTATEAAGATKGRS---TTDWQATGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V+ + P+ VDDV L L AAR R+ A ++ +TGSVGKT+TK Sbjct: 59 GAGAALVSR--IPEGVPEDAPLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L + KT+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L H R Sbjct: 117 EMLASILETRGKTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+ ++TT+A HL F + IA+ KA +F+GL GT +N D +L++++ A G Sbjct: 177 PHVGLVTTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQARG 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K I FG+ D+ L +Q ++ + ++ + G H A N L L Sbjct: 237 AK-IVEFGRMAR-DYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAAC 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQ 362 L D+D AI L + P +GRG R AL N L+D+SYNANP SM+AA+ VL+ Sbjct: 295 VELGVDLDQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAA 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + RRIA LGDM E+G Q+ H +A+V ++ + V G + AL ALP Sbjct: 355 SAGQ---RRIAFLGDMKELGAQEQAMHAAIADVAAMAQVDQVHCIGPLMRALHQALPEGK 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ET G+ L + + DGD V+ K S S ++++ L Sbjct: 412 RGLWAETSAGMALHLPELIRDGDAVLAKGSLSMALAQIVDGL 453 >gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 187/485 (38%), Positives = 260/485 (53%), Gaps = 40/485 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G + V G+SID+R++ P + F A+ DGHDF+ A Sbjct: 1 MSALWTGVEAAAATGGR---LTRDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ V + P+ VDDVL AL + AAR R+KA I+A+TGSVGKT Sbjct: 57 LEKGAAAALVS--RVPEGLPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L++ +T+A SYNNH GVPLTLARMP D ++G+ ELGMSH GEI L+ Sbjct: 115 STKEMLRTVLAAAGRTHASEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+PH+ VITT+A AH F IE IA KA IFEGL GT +N D + +L A + Sbjct: 175 MVQPHVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAK 234 Query: 241 ALGIKTIYSFGKSKN-----ADFQLRKW-KQCSEQSW-----MEVQLQGKSMEVVHHGIG 289 G + I +FG++ D ++R S ++W M+V G+ Sbjct: 235 DKGARVI-TFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGR---------- 283 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QG-FFTLIDES 345 H A N L + L D A+ AL+ + P GRG R +L+ +G F LID++ Sbjct: 284 -HFAVNALAVIAAADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDA 342 Query: 346 YNANPASMKAAISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 YNANP SM AA+ VL+ P GRR+AVLGDM E+G + H LAE +L Sbjct: 343 YNANPTSMAAALDVLALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHALT 402 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + G + AL ALP + ++ T + + I GDVV+VK S Sbjct: 403 AADLIVCVGTRMKALHAALP-AERAYWLATPEEILPHITRIADAGDVVLVKGSKGSRVSI 461 Query: 460 LINLL 464 +++ L Sbjct: 462 IVDAL 466 >gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 463 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 173/467 (37%), Positives = 254/467 (54%), Gaps = 16/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW + +A++G + V ++ DSR I + FFA+KG DGH+++ A Sbjct: 1 MKALWQSEAIARAVKGTASADFS---VRNVAFDSREIQKGDLFFALKGTESDGHNYVDAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA VV + + P VDD AL LAVA+R R+ II ITGSVGKT Sbjct: 58 FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +TKE L +AL + +K + + SYNNH+GVPL+LARMP + FGIFE+GM+H GE+ L Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV+P +A+IT IAPAH + F+ IA AK+EIFEGL G + +D + +LL AK Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I SFG + A + + ++ + + ++ + + + N + Sbjct: 231 VQEKKAE-IRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAM 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L +V + D+ A AL +GRG+R+ + G +IDESYNANPASM A I Sbjct: 290 AVLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATI 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L P + RRI +LGDM E+G+ S ++H LA+ LS + HV L G + AL+++ Sbjct: 350 KALEN-EPK-DKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEES 407 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L I E D + L D+++VK SNS G +++ L Sbjct: 408 LAGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSTVVSSL 454 >gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter gallaeciensis BS107] gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 470 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 177/446 (39%), Positives = 251/446 (56%), Gaps = 12/446 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GISID+RSIA + F A+K DGHDF+ A++KGAG +V+ +G P+ Sbjct: 23 VDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR-RPEGVGD-DAPLL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDV AL L A R R+ A +IA+TGSVGKT+TKEML LS +T+A + SYNNH Sbjct: 80 LVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASYNNH 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+AP HL F GIE I Sbjct: 140 WGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGIEGI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263 A+ KA I +GLE G LN D + +L++ + + + FG + L Sbjct: 200 AAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERV-THDVQWFGTGTGPIAPTYHLTAT 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 +++ V L +H +G H A N L L ++ L D+ A+++LS++ P Sbjct: 259 TLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLWSP 318 Query: 323 KEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 GRG R +L QG L+D+SYNANP S+ AA++V +P GRRIA LGDM E Sbjct: 319 VTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAV-LAATPCA-GRRIAYLGDMKE 376 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G Q H DLA++ ++ + + G + AL ALP + T D + + Sbjct: 377 LGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDDVRADLAGQ 436 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 + GDVV+ K S S ++++ + E Sbjct: 437 IAAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter sp. TrichCH4B] gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter sp. TrichCH4B] Length = 463 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 180/442 (40%), Positives = 255/442 (57%), Gaps = 11/442 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 V+GISID+R++AP + F A+K DGHDF+ A+ KGAG +V+ + VA GS P Sbjct: 23 VDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSHIPEGVAE-GS---P 77 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDDV AL L A R R+KA ++A+TGSVGKT+TKEML L+ +T+A + SYN Sbjct: 78 LLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVASYN 137 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH GVPLTLARMP D +F + ELGM+H GEI L+ RPH+A++TT+A HL F + Sbjct: 138 NHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVA 197 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA KA I EGLE G LN D +L+A + A GI+T + FG+S +A ++L+ + Sbjct: 198 GIAREKAAIIEGLEPGGVAVLNADLDETPVLRAVAEAAGIETRW-FGQSADA-YRLKDAE 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + L G+ + +G H A N L V L D+D A+ L+ + P + Sbjct: 256 LDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLALGGDLDLALAGLAGWSPVK 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG R+ L G T++D++YNANP SM AA++VL+ GRRIA L DM E+G Sbjct: 316 GRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATP--ATGRRIAYLADMKELGPQ 373 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H LA +L I + G + L DALP + + ET + + + G Sbjct: 374 EAALHAALAAHPALDRIDQIHCIGPLMKHLFDALPATKRGIWVETSAEAATALPTHISGG 433 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D V+ K S S R+++ + E Sbjct: 434 DAVLAKGSLSMAVARVVDAIRE 455 >gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] Length = 470 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 267/472 (56%), Gaps = 21/472 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G +IG VNGISID+RSIA + F A+K DGHDF+ A++K Sbjct: 3 LWTAEETAAATGGVAIG---DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V+ S P+ V+DV L L A R R+ A +IA+TGSVGKT+TK Sbjct: 59 GAGAALVSRRPEGV--SEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L R Sbjct: 117 EMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++TT+AP HL F GIE IA+ KA I +GLE G LN D + +L+A + Sbjct: 177 PHVAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEPGGVAVLNADIAEAPILQAVA-GRA 235 Query: 244 IKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNML 297 + + FG + ++L +++ EV L QG +++ +G H A N L Sbjct: 236 AQDVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQI--QSLGAHFAMNAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKA 355 L ++ L D+ A+++LS++ P GRG R +L QG L+D+SYNANP S+ A Sbjct: 294 GALACLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAA 353 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++V +P EGRRIA LGDM E+G + H LA++ ++ ++ V G + AL Sbjct: 354 ALAV-LAATPC-EGRRIAYLGDMKELGPQEAALHAALADLPAMADLDAVHCIGPLMGALH 411 Query: 416 DALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ALP HY+ + D + + + GDVV+ K S S ++++ + E Sbjct: 412 AALPADKRRGHYASSAD-VLADLPGQIGAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 470 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 177/447 (39%), Positives = 252/447 (56%), Gaps = 14/447 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GISID+RSIA + F A+K DGH+F+ A++KGAG +V+ S P+ Sbjct: 23 VDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSRRPEGV--SEDAPLL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDV L L A R R+ A +IA+TGSVGKT+TKEML LS +T+A + SYNNH Sbjct: 80 LVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASYNNH 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+AP HL F GIE I Sbjct: 140 WGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGIEGI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263 A+ KA I +GLE G LN D + +L++ + + + FG + L Sbjct: 200 AAEKAAIMDGLEPGGVAILNADIAEAPILQSVAERV-TSDVQWFGTGTGPIAPTYHLTGT 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 +++ V L G +H +G H A N L L ++ L D+ A+++LS++ P Sbjct: 259 TLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLWSP 318 Query: 323 KEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 GRG R +L QG L+D+SYNANP S+ AA++VL+ GRRIA LGDM E Sbjct: 319 VTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDMKE 376 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQS 439 +G Q H DLA++ ++ + + G + AL ALP HY+ + D + + Sbjct: 377 LGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPADKRGGHYATSHD-VRADLAG 435 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GDVV+ K S S ++++ + E Sbjct: 436 HIAAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2083] gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium HTCC2083] Length = 485 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 180/469 (38%), Positives = 259/469 (55%), Gaps = 18/469 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW D +A G ++G V+GISID+RSI + F A+K DGH+F+ A+ K Sbjct: 3 LWIAPDAAKATGGKAVG---DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQALAK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V V + P+ V+DVL AL L A R R++A ++AITGSVGKT+TK Sbjct: 59 GAGAALVT--HVPEGVAKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS+ +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L + R Sbjct: 117 EMLRDVLSAQGRTHASVASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAKMAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+++ITT+A AHL F I+ IA+ KA I GLE G LN D +LK+K+ A+ Sbjct: 177 PHVSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAEAMH 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I ++ FG S + ++ L + +E + G + G H A N L L Sbjct: 237 INAVW-FGASAD-EYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGALASA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG----FFTLIDESYNANPASMKAAISV 359 L AD+ A ++++ + P GRG R AL+ LID++YNANP S+ AA+ V Sbjct: 295 EALGADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAALDV 354 Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 L+ I +GRRIA LGDM E+G+ + H +A + + ++ + G + Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVARLSCIEHLDMIHCVGPLMRG 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 +ALP + H+ ET + + L GDVV+ K S S G R+++ Sbjct: 415 CYEALPDAKRGHWFETSAEMASTVGRDLDAGDVVLAKGSLSMGLARVVD 463 >gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 262/465 (56%), Gaps = 22/465 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + +A G + G V+G+SID+R++A + F A+K DGHDF+ A Sbjct: 1 MSALWTAREAAEATGGTAQG---DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQA 56 Query: 61 VQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + KGAG +V+ + VA+ P+ V+DVL AL L AAR RS+A ++A+TGSVG Sbjct: 57 LGKGAGAALVSHIPEGVAA----DAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEML L+ +T+A SYNNH GVPLTLARMP D F + E+GM+H GEI L Sbjct: 113 KTSTKEMLRTVLARQGRTHAAEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L RPH+A++TT+A AHL F IE IA KA IFEGLE G +N D +L+ Sbjct: 173 ARLARPHVAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEPGGIAVVNADLDTTPILEEA 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G +I FG +K D+ L + +++ + ++QG++ G H A N L Sbjct: 233 ATRAG-ASIRRFG-TKARDYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLG 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANPASMK 354 L V+ L D A L+++ P GRG R ++ QG+ LID+++NANP S++ Sbjct: 291 ALAAVAALGGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLE 350 Query: 355 AAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AA+ VL+ +P GRRIA+LGDM E+G + H D+A + + V G Sbjct: 351 AALEVLAAATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVG 410 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + L ALPR+ +++ + + + + GDVV+VK S Sbjct: 411 PRMRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSK 455 >gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus denitrificans PD1222] gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paracoccus denitrificans PD1222] Length = 461 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 253/463 (54%), Gaps = 20/463 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LWT D +A G + + F V G+SID+R+I P + F A++ DGHDF+ A++ Sbjct: 3 LWTSQDAAEATGGRAT----RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALE 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V+ + + P+ V DVL AL L A R R + ++AITGSVGKT+T Sbjct: 58 KGACAALVSR--IPEGVAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTST 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM +AL+ + +A SYNNH GVPLTLARMP D DF I E+GM+H GEI L L Sbjct: 116 KEMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLARLA 175 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHA 241 RPH+A++TT+A AHL F IE IA K IF GL + GT + D +LL+ A Sbjct: 176 RPHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDA 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I + FG+ A + K + + + ++ G++++ + G H N + L Sbjct: 236 AAI--VIGFGQQGMA--RPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLA 291 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +S ADV A K LS + P GRG + LID++YN+NP S+ A ++ L+ Sbjct: 292 ALSAAGADVAEAAKHLSDWRPPLGRG----AVEDLDGIRLIDDAYNSNPTSLSAGLATLA 347 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +++ GRR+A+LGDM E+G + H +A ++ + V +G + AL +ALP+ Sbjct: 348 RLT---GGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQG 404 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ET L + + GD+V+VK S S +++ L Sbjct: 405 RRGMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDAL 447 >gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] Length = 486 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 174/464 (37%), Positives = 237/464 (51%), Gaps = 24/464 (5%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q+I + G F +G+ +DSR + P + F A+KG DGH FI A KGA + Sbjct: 27 QSIASATGGTASHAFQASGVEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFAKGAVAAIT 86 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + + P V D AL+ LA AAR R A IA+TGSVGKT KE + +L Sbjct: 87 DR-------PVDFPHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASL 139 Query: 131 SSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A + SYNNH+GVPL+LARMP FG+FE+GM+H GEI L+ VRPH+A+ Sbjct: 140 DRASRGAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSDHVRPHVAL 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 ITTIAPAH+ N +E IA KA+IF GL GT + D + + + ALG+ + Sbjct: 200 ITTIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAKALGVNVV- 258 Query: 249 SFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG+S++AD + L + S + L + G H N L + V Sbjct: 259 TFGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAG 318 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D+ +A AL+ +GRG R+ G L+DESYNANPASM+A + L Q H Sbjct: 319 GDLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAH- 377 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------- 420 RR+AVLG M E+G+ + FH +AE L+ I HV L G + AL L R Sbjct: 378 --RRVAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELGRMPANSLG 435 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + L GD V+VK SNS G RL+ Sbjct: 436 FAPSFAQCDSPAEAIAALEEYGLTHGDAVLVKGSNSVGLGRLVQ 479 >gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] Length = 464 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 172/454 (37%), Positives = 243/454 (53%), Gaps = 12/454 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWTF +L +A G G+ +GI+ DSR++ P + F A++G DGHDF+ A Sbjct: 9 LWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFAS 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTT 122 GA L V + L +P DV AL +AV AR R+ T +TGSVGKT+ Sbjct: 68 GAVLAVTRRPIEGG-ACLLVP-----DVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +M+ L + ++ I S+NNHIGVPLTLARMP D + +FE+GM+H EI L+ V Sbjct: 122 TQMVMQGLQQAGRAHSAIKSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFV 181 Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 PH VITT+ H NF G +A+AKAEIF+GL G LN D+ +F+ L K+ Sbjct: 182 APHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLAILNADNRWFDHLSTKARG 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + +FG++ D QL + + +++ + + G+ + G H A N L L Sbjct: 242 SG-ALVAAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALL 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L D+DT++ AL F EGRG+ G T+IDESYNANP SM A ++ L Sbjct: 301 MLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLG 360 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 Q GR++AVL DM E+G H LAE + + V+L+G + L DALP Sbjct: 361 QRET--AGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYLAGPLMKHLWDALPSG 418 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + Y+ T L + L GDVV++K SN Sbjct: 419 LKGGYAATAADLLAAVTEGLQAGDVVMLKGSNGS 452 >gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acidiphilium cryptum JF-5] gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium cryptum JF-5] Length = 451 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 245/452 (54%), Gaps = 17/452 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ DL A G + + G+SIDSR+IAP E F A+ DGHDF+ A Sbjct: 1 MSGLWSARDLAVATNG--TWLRGEADATGVSIDSRTIAPGELFVALADAR-DGHDFVPDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+V D+ A P V+DV AL +L R RS+A ++A+TGSVGK+ Sbjct: 58 EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS+ T+A S+NNHIGVPLTLAR+P + DF + E+GM+H GEI L+ Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+ VIT I AHL +E IA KAE+ G+ G L F L ++ Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPR-GPFLSRLARRAR 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G++ + SFG A+ +L + + ++ + + + G HMA N + L Sbjct: 231 D-GVRVV-SFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D A AL F P GRG R R ++ TL+DESYNA+ S++AA+ VL Sbjct: 289 AAAAALGLDPAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GRRIAVLGDM E+G+ + H DLA+ +S V+ G H+ + D LP Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ L ++++L GDVV+VK S Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGS 435 >gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 489 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 249/479 (51%), Gaps = 34/479 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT ++ A G + V+G+ IDSR + + FFA+KG + DGH ++ A + Sbjct: 22 LWTSEEIAAATGGRASAPF---AVSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGR 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV A G P V + AL L AAR R A II +TGS GKT K Sbjct: 79 GAAGAVVEH---ACFG----PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVK 131 Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 E L AL +S + + + SYNNH+GVPL+LARMP FG+FE+GM+H GE+ LT L Sbjct: 132 EALYAALDRASRGRAHRSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHAGELAALTRL 191 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A++TTIAPAH+ +F+G E IA AKAEIFEGLE G + D+ FE L+AK+ Sbjct: 192 VRPHVAIVTTIAPAHIGHFAGEEAIADAKAEIFEGLEPGGVAIIPADNRHFEHLRAKA-T 250 Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + + SFG +K+A + L + + L G+ + G H N L + Sbjct: 251 LHAERVISFGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVM 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAA 356 V + D+ A AL+ GRG R+ + G + LIDESYNANPASM Sbjct: 311 AAVEAIGGDLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAVT 370 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L Q RR+A+LG M E+G +H +LA ++ + + L G + AL D Sbjct: 371 LRQLGQTP---AARRVAILGAMRELGADEARYHAELAGPVAEGKVDRLILVGGEMTALAD 427 Query: 417 ALPRSIHVHYSETMDGLFLFIQS-----------SLVDGDVVVVKSSNSCGFYRLINLL 464 AL +S + +D +Q+ + GD ++VK SNS G L+ L Sbjct: 428 ALGKSGSAALAGAID--VAHVQTAAEAAECLAADGVRGGDAILVKGSNSVGLGALVRSL 484 >gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 477 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 250/473 (52%), Gaps = 20/473 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A G G NG+SID+R++ P + F A+K DGH+F+ A+ Sbjct: 3 LWTATEAAEATGGRVQG---DWACNGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDS 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GAG +V T + +G P+ V+DV AL L A ARL +A + A+TGSVGKT+ Sbjct: 59 GAGAALV-THVPEGVGE-DAPLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTS 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML K +A + SYNNH GVPLTLARMP D D+ + E+GM+H GEI L Sbjct: 117 TKEMLLAIFGDQGKAHASVDSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPLAKQ 176 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +PH A++T +A HL F + IA KA IF+G+E G +N D +++ K+ Sbjct: 177 AQPHAAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPGGVAVINADHDHSDIVLDKALE 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ +FG+ K + L K E + + ++ G + G H A N L L Sbjct: 237 RGLRET-TFGR-KGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYNANPASMKAAI 357 + L AD A+++L + P GRG R + L N LID+SYNANP SM AA+ Sbjct: 295 VAEALGADRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAAL 354 Query: 358 SVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 VL+ I +GRRIA +GDM E+G + + H LA++ + + V G + Sbjct: 355 EVLAASEVTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVGPLM 414 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A D LP ++ET + + +++ L GDVV++K S S +++ + Sbjct: 415 KAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKGSLSMKLGSIVDAI 467 >gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium etli GR56] Length = 247 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 140/248 (56%), Positives = 180/248 (72%), Gaps = 1/248 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSI+ EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTDDMIAAMAGRPFGTLPEG-ITGISIDSRSISSGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL KL +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGKLGLASRERSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLARMPGDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIY 248 +LGI+ I+ Sbjct: 240 SLGIEHIH 247 >gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] Length = 476 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 238/442 (53%), Gaps = 15/442 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ G+SID+R++ + F A+ DGHDF+ A+ KGA +V+ V Sbjct: 19 PEWQATGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVS--HVPQGVPED 75 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P+ V DV AL L A R R ++A+TGSVGKT+TKEML LS KT+A + S Sbjct: 76 APLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVAS 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNH GVPLTLARMP D +F + E+GM+H GEI L + PH+A+ITT+A AHL F Sbjct: 136 YNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALITTVAAAHLEAFED 195 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 I IA KA IFEG+ G LN D +L AK+ ++ I +FG+ DF+L + Sbjct: 196 ITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRLRDI-TFGE-HGYDFKLMR 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + Q+ + + G H A N L + +++ L DV A+ +L + P Sbjct: 254 ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVALALGSLGRWTP 313 Query: 323 KEGRGKRYRCALN----QGFFTLIDESYNANPASM------KAAISVLSQISPHGEGRRI 372 +GRG+R R L+ + F LID+SYNANP SM AA V + I +GRRI Sbjct: 314 YKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVTNDIGRVSKGRRI 373 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 A LGDM E+G + H LA + + I + G + AL DALP + ET + Sbjct: 374 AYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALPEPQRGTWFETAEE 433 Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454 +++ + GDVV+ K S S Sbjct: 434 AATRVKTHIDSGDVVLAKGSLS 455 >gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 476 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 244/472 (51%), Gaps = 19/472 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A G + G G+SID+R++ + F A+ DGH+F+ A++K Sbjct: 3 LWTAAEAARATGGEARG---DWTALGVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ V P+ V DVL L L AAR R I+A+TGSVGKT+TK Sbjct: 59 GAAAALVSR--VPENVPADAPLLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML + ++ +A SYNNH GVPLTLARMP D + GI E+GM+H GEI L L R Sbjct: 117 EMLRTVIGGQRRVHAAEASYNNHWGVPLTLARMPRDTEVGIIEIGMNHPGEIAPLARLAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+ AHL F I+ IA KA IF GL G +N D +L+A + A G Sbjct: 177 PHVAMITTVGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAEATG 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG++ +L K + E ++ G H A N L L +V Sbjct: 237 AH-ILTFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVV 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359 L D A LS + P GRG R R L+ + F LID+++NANP SM AA+ V Sbjct: 296 RALGLDRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEV 355 Query: 360 LSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 ++ P H GRRIA+LG+M E+G + H LA++ + + V G + A Sbjct: 356 IAAARPKDNVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKRMRA 415 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464 L +ALP ++E L + LVD GDVV+VK S +++ L Sbjct: 416 LYEALPPGNRGRHTEKASDLAAK-AARLVDAGDVVLVKGSKGSKVSEVVDAL 466 >gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] Length = 458 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 175/471 (37%), Positives = 241/471 (51%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ QA G + P V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MTDLWTSEEIAQATGG--VASAPFA-VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ +++ P V D AL L +R R + ++ +TGSVGKT Sbjct: 58 FGQGAAGAIVSQ-------TIAQPHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKT 110 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L AL + + + + SYNNH+GVPL+L+RMP + FG+FE+GM+H GE+ L Sbjct: 111 GTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236 T VRPH+A++T IAPAH+ F E+IA AKAEIFEGLE GT + YD L K Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A+ HA I +FG AD + R+ + + L G + G H N Sbjct: 231 AEKHA---ARILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSN 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L V L D+ A AL+ GRG+R + G LIDESYNANP SM A Sbjct: 288 ALAVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMAA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 L Q+ RRIAVLG M E+G+ S+ H L E L+ + + L G + L Sbjct: 348 ---TLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLVGEEMDPLA 404 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL + + I++ + GD ++VK SN G RL+ L E Sbjct: 405 QALGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKGSNGIGLSRLVAALQE 455 >gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 459 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 166/454 (36%), Positives = 246/454 (54%), Gaps = 21/454 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ LWT LL A G F +G+SID+R++ P + F A++G + DGHD Sbjct: 1 MSALWTREALLAATGGR----FSMPFDAHGVSIDTRTLEPADLFVALQGDNGDGHDHAEA 56 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA V+ + D P V+D + AL L AR R T+ A+TGSVGK Sbjct: 57 ALARGAAGVLAHRDGPG-------PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGK 109 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEML AL+ +A SYNNH GVPLTLAR+P + E+GM+H GEI L Sbjct: 110 TTTKEMLRTALAPFGPVHAAYASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLA 169 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RPH+A+ITT+ +H+ + IE IA KA +F GL G + D L A++ Sbjct: 170 ALARPHVAIITTVERSHIGHLGSIEAIADEKAALFSGLAADGVAIMPADSPMLPRLMAQA 229 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG N+ +L++ + ++ S +++ ++G+S+ G HMA N L Sbjct: 230 ---APHRVMTFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V D A AL FH GRG + ALN G L+DESYNA+ AS++AA+ V Sbjct: 287 LSAVDAAGFDPHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDAL 418 L +++P RRI VLGD+ E+G+ + + H LA+ + + +++ + G + L DAL Sbjct: 347 L-RLTP--ASRRIVVLGDILELGDQAVAEHAGLAQDIAACADLA--FTCGPMMRHLFDAL 401 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 P S+ + L + +++ DGD ++VK S Sbjct: 402 PASVRGAHEADSASLAPVVSAAIRDGDTILVKGS 435 >gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] Length = 461 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 188/477 (39%), Positives = 264/477 (55%), Gaps = 23/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT +L A G +G P V GISID+RS+AP + F A+KG + DGH I A Sbjct: 1 MSLLWTREELETATGGTFLGNAPVS-VTGISIDTRSLAPGDLFIALKGDNSDGHAHIATA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 ++KGA V+ + S L+ P + V D + L KLA+AAR R K ++A+TGSVGK Sbjct: 60 LEKGAAAVLAH-----SAEGLTDPRILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEML + L+ T+A SYNNH GVPLTLAR+P + F I E+GM+H GEI L Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEILPLA 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235 +V+P +AVITTI AHL + ++ IA+ KA I L G I + DD+ FF Sbjct: 175 KMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITAL-PAGGIAIMPDDAHGTPFFTAA 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K+ A+ ++ G + + L + ++ S +V + GK+ V G H+A+N Sbjct: 234 AVKAQAV----LWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARN 289 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ++ L + L ADV A AL+ F P +GRG + A G TL+DESYNA+ AS++A Sbjct: 290 AVVALAACAALGADVAKAAAALAAFRPGKGRGALTKIA--GGAITLLDESYNASAASIRA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ V+ I RRIAVLGDM E+GE S S H + V+ G ++ L Sbjct: 348 ALDVVRHIP---ATRRIAVLGDMRELGEFSISEH-QALAAPTASAADLVFCCGSYMKTLF 403 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 DALP S ++E+ L + ++L GD V+VK S +I L PA++ Sbjct: 404 DALPPSKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIA-ALNALPAVE 459 >gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 476 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 173/461 (37%), Positives = 247/461 (53%), Gaps = 18/461 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A G + Q G+SID+R++ + F A+ DGHDF+ A+ K Sbjct: 3 LWTSAEAAEATGGTTTS---QWNATGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ V P+ V+DV GAL L A R R ++A+TGSVGKT+TK Sbjct: 59 GAAAALVS--HVPPGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS + +A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L + Sbjct: 117 EMLLAMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAA 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+A AHL F I IA KA IFEG+ G LN D +L AK+ Sbjct: 177 PHVALITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ I +FG+ DF+L + + + + ++ + + G H A N L + ++ Sbjct: 237 LRDI-TFGE-HGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVM 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359 + L DV A+ +L + P +GRG+R R L+ + F LID+SYNANP SM AA+ V Sbjct: 295 AALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEV 354 Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 L + I +GRRIA LGDM E+G + H LA + + I + G + A Sbjct: 355 LAAAEVTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRA 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L DALP + E + +++ + GDVV+ K S S Sbjct: 415 LYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLS 455 >gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] Length = 451 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 174/452 (38%), Positives = 244/452 (53%), Gaps = 17/452 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ DL A G + + G+SIDSR+ AP E F A+ DGHDF+ A Sbjct: 1 MSGLWSARDLAVATNG--TWLRGEADATGVSIDSRTTAPGELFVALADAR-DGHDFVPDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+V D+ A P V+DV AL +L R RS+A ++A+TGSVGK+ Sbjct: 58 EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS+ T+A S+NNHIGVPLTLAR+P + DF + E+GM+H GEI L+ Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+ VIT I AHL +E IA KAE+ G+ G L F L ++ Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPR-GPFLSRLARRAR 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G++ + SFG A+ +L + + ++ + + + G HMA N + L Sbjct: 231 D-GVRVV-SFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D A AL F P GRG R R ++ TL+DESYNA+ S++AA+ VL Sbjct: 289 AAAAALGLDPVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GRRIAVLGDM E+G+ + H DLA+ +S V+ G H+ + D LP Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLADAVSGV-ADLVFACGPHMRVMFDELPE 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ L ++++L GDVV+VK S Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGS 435 >gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis HTCC2594] gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis HTCC2594] Length = 498 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 183/471 (38%), Positives = 248/471 (52%), Gaps = 26/471 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW+ ++ A G + G G+ +DSR + P + F A+KG DGH F+ A Sbjct: 36 LWSAQEIAAATGGTASGDFQ---CAGVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFAA 92 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V + P V+D AL LA AAR R+ A I +TGSVGKT K Sbjct: 93 GAAAALVER-------PVDWPHVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGVK 145 Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 E + AL SS + + + SYNNH+GVPL+LARMP +G+FE+GM+H GEI LT Sbjct: 146 EAIFAALEKSSRGQAHRSVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHAGEIAGLTDH 205 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+AVITTIAPAH+ N IE IA AKAEIFEGL K GT + D +E L+A + Sbjct: 206 VRPHVAVITTIAPAHIENLGSIEAIADAKAEIFEGLVKGGTAVIPADSEQYEQLRASAEK 265 Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ TI SFG++ +AD + L + S + Q++ + G H N L L Sbjct: 266 RGV-TIVSFGRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAVL 324 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V D+ A AL+ +GRG R+ A+ G LIDESYNANPASM+A + L Sbjct: 325 AAVQAAGGDLGAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASMRATLRQL 384 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q RRIAVLG M E+G+ FH LAE + ++ + L G +LAL L + Sbjct: 385 GQTPAT---RRIAVLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLGK 441 Query: 421 S---------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + H + + + L GD ++VK SNS G +L++ Sbjct: 442 AGSGTLGKTPAFAHCDGPAEAIAALQEYGLTAGDAILVKGSNSIGLGKLVD 492 >gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] Length = 477 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 173/474 (36%), Positives = 254/474 (53%), Gaps = 18/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A GH+ + G+SID+R+IA + F A+K DGH+F+ A Sbjct: 1 MTALWTSADAAAATGGHT---TQEWDAQGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V T A + + P+ V DVL AL L AAR R+ A I AITGSVGKT Sbjct: 57 LDQGAAAALV-THRPADVPA-DAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L K +A SYNNH GVPLTLARMP D D+ + E+GMS+ GEI L+ Sbjct: 115 STKEMLRAVLEKQGKCHAAEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQ 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +PH+A++TT+A AHL++F + IA KA I +GLE G LN D +L+ + Sbjct: 175 MTQPHVAMLTTVAAAHLASFDNLAGIAVEKASIMDGLEPGGVAVLNGDIETSGILQDHAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG + + FG++ D+ ++ + + + + G++ G H A N + L Sbjct: 235 KLGARQVL-FGETA-PDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKR----YRCALNQGFFTLIDESYNANPASMKAA 356 + L AD A + + P GRG R A + L+D+++NANP S+ AA Sbjct: 293 AVAEALGADPVAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAA 352 Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ +P +GRR+A+LGDM E+G+ Q H ++A L ++ V +G Sbjct: 353 LEVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPL 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +L L ALP H++ET L L + GDVV+VK S +++ + Sbjct: 413 MLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKGSKVSLVVDAI 466 >gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] Length = 472 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 170/468 (36%), Positives = 236/468 (50%), Gaps = 25/468 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT D+ A+ G G +G++ DSR + P + F A+KG DGH F+ A Sbjct: 4 PLWTAFDIAAAVDGEVYGDF---RTDGVTFDSREVGPGDLFIALKGETTDGHRFLDKAFA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V+ + P V D + AL+ L AAR R +I +TGSVGKT T Sbjct: 61 AGAAGAIVSD-------ACDGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGT 113 Query: 123 KEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L + + + SYNNH GVPL+LARMP D G+FE+GM+H GE+ LT Sbjct: 114 KEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAALTR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRPH+A++T IAPAH + F+ +IA AK EIF+GL+ G + YD + L AK Sbjct: 174 LVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIAAAK 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 HA I +FG + AD + + + + L + G H N + Sbjct: 234 PHA---ARILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-----LIDESYNANPASM 353 + V + D+ A A + GRG+R A+ G LIDESYNANPASM Sbjct: 291 VIAAVWAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASM 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 A I +L + RR+AVLG+M E+G S +H DLA L + L G + A Sbjct: 351 AATIKMLGR---ERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAA 407 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 L +AL I + D I++ + GD +++K SN+ G RL+ Sbjct: 408 LANALEGRIEFEHVPDADAAIESIEAKIAPGDAILIKGSNAIGLSRLV 455 >gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 480 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 187/480 (38%), Positives = 256/480 (53%), Gaps = 35/480 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A G + +G+SID+R++AP + F A+K DGH+F+ A++K Sbjct: 3 LWTAAEAARATGGDN---RTDWTADGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEK 58 Query: 64 GAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA LV + VA+ P+ V DVL AL L AAR R+ A + AITGSVGKT+ Sbjct: 59 GAAAALVTHRPEGVAA----DAPLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 +KEML AL +T+A SYNNH GVPLTLARMP D ++ I E+GM+H GEI L L Sbjct: 115 SKEMLRAALERQGRTHAAEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARL 174 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RPH+A++T +APAHL F IE IA KA IFEGLE GT +N D +L+A + A Sbjct: 175 ARPHVAMVTIVAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEA 234 Query: 242 LGIKTIYSFGKSKNADFQLRKWK---QCSEQS---W-MEVQLQGKSMEVVHHGIGYHMAQ 294 I SFG +L K C+ S W EV L+ + G H A Sbjct: 235 A-GAEIVSFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATE-------GAHFAV 286 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANP 350 N L L + L AD A+ L+ + P GRG R L+ G LID+++NANP Sbjct: 287 NALGCLATAAALGADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANP 346 Query: 351 ASMKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 AS+ AA+ VL+ P G+GRRIA+LGDM E+G + H +A+ ++ ++ V Sbjct: 347 ASLAAALEVLAAARPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLV 406 Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + L ALP + E + L + GDVV+VK S R+++ + Sbjct: 407 HCVGPLMRELHRALPDGRRGRWVENAEDLAAKAARLVDPGDVVLVKGSKGSRVSRVVDAI 466 >gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 245/459 (53%), Gaps = 14/459 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W L +A+ +I I N + +S+ + + F ++G + DGHD++L A+ K Sbjct: 2 IWNSETLSKAL---AITISNSINCNEVQFNSKDVKKGDLFIVLQG-NRDGHDYVLDAIDK 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ + + + VDD L K+A+ R SKA IAITGSVGKT+TK Sbjct: 58 GAAAVIVSKQVEINDKD---KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L I L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L +++ Sbjct: 115 EALKILLQYDSLVFASRGNFNNRLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P+IA+IT I+ AHL F+ +EEIA AK EIFE K +N D + + + + L Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADINCYNKIVSILKNLS 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +Y+FG S N QL ++ EQ ++ ++ KS+E+ I H A+N L I+ Sbjct: 235 INRVYNFGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLII 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Q+ Sbjct: 295 DILGKDIEIAANHLANIPPNKGRGE----IINIQNSRIICDYYNASPQSMKAALEYLKQV 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + A++GDM E+GE S+ H +L + S V+L G + + D LP I Sbjct: 351 PAEN---KTAIIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPPKIV 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 Y + +D L I +++++K S ++++ Sbjct: 408 KKYFKNVDELITHITDLFESNELILIKGSRGIKLDKIVD 446 >gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca bermudensis HTCC2601] gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. HTCC2601] Length = 477 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 178/477 (37%), Positives = 256/477 (53%), Gaps = 30/477 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT D A G G NG+SID+R+IA + F A+K DGHDF+ A++ Sbjct: 3 LWTAKDAAAATGGQVAG---DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALEN 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + + ++ + VDDV L L AAR R++A ++A+TGSVGKT+TK Sbjct: 59 GASAALVSR-IPEGVDPANLLI--VDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML + L + + +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ + R Sbjct: 116 DMLRVVLGAQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSDMAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT +APAHL+ F +E IA KA IFEGLE GT +N D LL A A Sbjct: 176 PDVAMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGEARA 235 Query: 244 IKTIYSFGKSKNADFQLR------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 I +FG+++ ++ ++W L S+ G H A N + Sbjct: 236 AHVI-TFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVP------GRHFAVNGM 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353 L + L D A+ AL + GRG+R L+ LID++YNANPAS+ Sbjct: 289 GVLAVAHALGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASL 348 Query: 354 KAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A++ VL+ GRRIA LGDM E+G + H +A++ ++ I V Sbjct: 349 AASLEVLAGAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCV 408 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + L ALP+ H++ET DG+ ++ + GDVV+VK S S G R+++ + Sbjct: 409 GPLMRTLWQALPQHKRGHWTETADGMAARVRHDMDAGDVVLVKGSLSTGLGRVVDAI 465 >gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17025] Length = 481 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 184/474 (38%), Positives = 256/474 (54%), Gaps = 18/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + A G + + F G+SIDSR++ P + F A+K DGH F+ Sbjct: 1 MTPLWTSDEASAATGGRAT----RAFSATGVSIDSRTLRPGDLFVALKD-QRDGHAFVAQ 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA +V+ + + P+ V DVL AL L AAR RS+A +I +TGSVGK Sbjct: 56 ALANGAAAALVS--RIPDGLTDGAPLLLVPDVLEALAALGRAARARSRARVIGVTGSVGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEML AL +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L Sbjct: 114 TSTKEMLRAALRGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLA 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RPH+A+ITT+APAHL F + IA KA I EGLE G L D +L A++ Sbjct: 174 RLARPHLALITTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARA 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ALG+ + +FG+S AD++L + E + ++ G H A N L Sbjct: 234 SALGVPAM-TFGQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAV 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356 L L D+ L ++ P GRG R R AL ++ F LID+++NANPAS+ A+ Sbjct: 293 LAAAEALGLDLTITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAAS 352 Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + +L+ ++P GRRIA+LGDM E+G + H +A+ +L I+ V G Sbjct: 353 LELLAAMAPTDGVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + + GD+V+VK S +++ L Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466 >gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] Length = 459 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 174/467 (37%), Positives = 244/467 (52%), Gaps = 21/467 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT ++ A G + G V+G++ DSR + P + F A+ G DGH F+ A + Sbjct: 3 LWTADEIATATGGQASGAFA---VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQ 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ D P V D AL L A+R R++ATII +TGSVGKT+ K Sbjct: 60 GAAGALVSADT-------PHPHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAK 112 Query: 124 EMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 E L AL + + + SYNNH GVPL+LARMP DV G+FE+GM+H GE+ LT + Sbjct: 113 EALYAALERGWHGRVHRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSALTAM 172 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPHIA++T IAPAH F IA AK EIF+GLE GT + YD + L A + Sbjct: 173 VRPHIAIVTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGTAIIPYDSPHRDRLIAAAKP 232 Query: 242 LGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + I +FG AD + + + S++ +L + + G H N L L Sbjct: 233 YAAR-IVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V D+ A AL+ GRG R+R A +IDESYNANPASM+A ++VL Sbjct: 292 AAVDAAGGDLGLAGLALAELGGLAGRGARFRAANGA---LIIDESYNANPASMRATLAVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ P GR +AVLG+M E+G+ S +H LAE + ++ V L G + L AL Sbjct: 349 AE-EP---GRHVAVLGEMRELGDDSADYHAGLAEPILAAHVEKVLLVGESMAPLAAALEG 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + S + DVV++K SN G R++ L +E Sbjct: 405 RVDFVHVTDAKAAQAALASIIAPNDVVLIKGSNGVGLARVVAGLGQE 451 >gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseovarius sp. 217] gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseovarius sp. 217] Length = 476 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 178/469 (37%), Positives = 249/469 (53%), Gaps = 35/469 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW+ + A G G V+G+SID+R++ + F A++ DGH+F+ A+ K Sbjct: 3 LWSAQEAAAATGGRVTG---DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V + + +G P+ V+DV L L A R RS+A ++A+TGSVGKT+TK Sbjct: 59 GAAAALV-SHVPEGVGG-DAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L +T+A SYNNH GVPLTLARMPVD F + E+GM+H GEI L + R Sbjct: 117 EMLRDVLRHQGRTHAAEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLARMAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HA 241 PH+AVITT+A AHL F IE IA KA IFEGLE G +N D + +L+A++ HA Sbjct: 177 PHVAVITTVAAAHLEAFEDIEGIAREKASIFEGLEPGGVAVINADIATAPILRAEAVRHA 236 Query: 242 LGIKTIYSFGKSKNADFQL------RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294 I SFG ++ A +L + ++W +S V G+ G H A Sbjct: 237 ---ARILSFGTARGAHHRLLNVELHDRVTVGHARAW-------RSPLVYKVGVPGRHFAM 286 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANP 350 N L L +V +L D A+ L+ + P GRG R L+ G LID+++NANP Sbjct: 287 NALAVLAVVQVLGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANP 346 Query: 351 ASMKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 SM AA+ VL+ P GRRIA+LGDM E+G + H LA++ + I + Sbjct: 347 TSMAAALEVLAAAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEI 406 Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 G + AL + L ++ T + L + GDVV+VK S Sbjct: 407 HCVGPRMRALWEVLSEGRQGRWAATAEDLAAQAHRLIDAGDVVLVKGSK 455 >gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 476 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 178/468 (38%), Positives = 258/468 (55%), Gaps = 28/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M LWT H + A QG V QG G+SID+R++ P + F A+K DGHDF+ Sbjct: 1 MTALWTAHQAVAATQG-----VTQGDWVATGVSIDTRTLQPGDLFVALKDVR-DGHDFVA 54 Query: 59 HAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 A++KGA +V+ D VAS P+ V DVL L L +AAR RS A I AITGS Sbjct: 55 MALEKGAAAALVSHRPDGVAS----DAPLLVVPDVLKGLEALGIAARARSTARIAAITGS 110 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKT+TKEML LS K +A SYNNH GVPLTLARMP D DF + E+GMS+ GEI Sbjct: 111 VGKTSTKEMLRTVLSRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIA 170 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ + RPH+A++TT+A AHL++F + IA+ KA I +GLE G LN D + +L+ Sbjct: 171 PLSRMARPHVAMVTTVAAAHLASFESLAGIAAEKATIVDGLEPGGIAVLNGDVATTAILQ 230 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ +G + + FG++ A +++ + + + + G G H N Sbjct: 231 DRAGDIGAQIVL-FGETAGA-WRISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--YRCALNQGFFT--LIDESYNANPAS 352 + L +V+ L AD A L+++ P GRG R + L F T L+D+++NANP S Sbjct: 289 VGVLAVVAALGADPVAASLDLALWVPPAGRGTREIIQLDLANEFETIDLMDDAFNANPTS 348 Query: 353 MKAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A++ V++ P +GR+IA+LGDM E+G + H +A+ L + + Sbjct: 349 LAASLEVIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPHLQQLDLIHC 408 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSN 453 +G + L +ALP+ ++ T + LVD GDVV+VK S Sbjct: 409 AGPLMRHLWEALPQGKRGQWAATAA-ELAAQATRLVDTGDVVLVKGSK 455 >gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 461 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 261/479 (54%), Gaps = 27/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT +L A G +G V GISID+R++ + F A+KG + DGH I A Sbjct: 1 MSLLWTREELETATGGTFLGNTSVS-VTGISIDTRTLTHGDLFIALKGDNSDGHAHITTA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA ++ ++ + G + V D + L KLA AAR R K ++A+TGSVGKT Sbjct: 60 LEKGAAAILAHS----AEGFTDPRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML + L+ T+A SYNNH GVPLTLAR+P + F I E+GM+H GEI L Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEILPLAK 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLK 236 +V+P +AVITTI AHL + ++ IA KA I L K G I + DD+ FF Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPK-GGIAIVPDDAHGTEFFTAEA 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K+ A+ +++ G + ++ L ++ S +V +QGK+ V G H+A+N Sbjct: 235 EKAQAV----LWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNA 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ---GFFTLIDESYNANPASM 353 + L + L ADV A AL+ F P +GRG AL Q G TL+DESYNA+ AS+ Sbjct: 291 VAALAACAALGADVAKAANALADFRPGKGRG-----ALTQIVGGAITLLDESYNASAASI 345 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA+ VL I RRIAVLGDM E+GE S S H + V+ G ++ Sbjct: 346 RAALDVLRHIP---ATRRIAVLGDMRELGEFSISEH-QALAAPAASAADLVFCCGSYMKT 401 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 L DALP S ++E+ L + ++L GD V+VK S +I L PA++ Sbjct: 402 LFDALPPSKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIA-ALNALPAVE 459 >gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 463 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 241/456 (52%), Gaps = 19/456 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M LW DLL A GH G+SID+R++ P + F A++G + +GHD + Sbjct: 1 MTLLWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVAR 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA VV + D + VDD L A+ +A AR R ++A+TGSVGK Sbjct: 61 ALEAGAACVVAHEDC-----GTDPRILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ K+ML AL++ T+ + SYNNH GVPLTLAR+P + + E+GM+H GEI L Sbjct: 116 TSVKDMLHAALAACGPTHCAVASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLA 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN---YDDSFFELLK 236 +VRP +AV+TT+A +HL +E IA KAEI L + G + +FFE Sbjct: 176 AMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRGGIGIIPDGVSGQAFFERNA 235 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A++ A T++ G + + + S ++L G E G HMA N Sbjct: 236 AQAGA----TVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ LG AD+ A+ L+ F P GRG + + Q L+DESYNA+PAS++AA Sbjct: 292 MLALGAACAAGADMARAVAGLATFRPGAGRGAMTK--VMQDKVALLDESYNASPASVQAA 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + +L ++P GRR+AVLGDM E+G + H+ L + N V+ G ++ L D Sbjct: 350 LDLLGLVAP---GRRVAVLGDMLELGAFAGHEHVSLLPAVR-ANADIVFCCGPNMKTLFD 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 LP S+ ++ L ++++L GD V+VK S Sbjct: 406 TLPPSLRGAWTPDSGQLAPLVRAALRAGDTVMVKGS 441 >gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 479 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 180/474 (37%), Positives = 252/474 (53%), Gaps = 28/474 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + +A G + G+SID+R++ P + F A+ DGHDF+ A+ K Sbjct: 3 LWTAAEAARATGGRA---STDWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V + + + + P+ VDDV AL + AAR R++A ++AITGSVGKT+TK Sbjct: 59 GAAAALV-SHVPPGVDAARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LSS +T+A SYNNH GVPLTLARMP D F + E+GM+H GEI L+ + R Sbjct: 118 EMLRDVLSSHGRTHAAEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSRMAR 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++TT+APAHL+ F +E IA KA IFEGLE+ G N D + +L A + A Sbjct: 178 PHVAMVTTVAPAHLAAFESLEGIAREKASIFEGLEEGGAAVYNGDLAVSPIL-ADTAARH 236 Query: 244 IKTIYSFGKS-----KNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + SFG+S + L+ +E ++W L + G H A N + Sbjct: 237 AAHLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVP------GRHFAVNAM 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASM 353 L + D + +L + P GRG R R L+ LID+SYNANPAS+ Sbjct: 291 GVLAVTHARGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASL 350 Query: 354 KAAISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 AA+ VL+ P + GRRIA LGDM E+G + H LAE ++ I V Sbjct: 351 GAALEVLAAAVPSNDMGRVSKGRRIAYLGDMKELGRTEAALHAALAEHPAMALIDRVHCV 410 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G + L + LP ++ET D + + L GDVV+ K S S G R++ Sbjct: 411 GPLMRHLWEVLPDGKRGRWTETADEMAANVARDLDAGDVVLAKGSLSMGLARVV 464 >gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] Length = 449 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 150/435 (34%), Positives = 237/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + ++S+ + + F A+KG DGHD+ L A+ KGA V+V+ + + + Sbjct: 23 NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITDKD---KILL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L I L +A G++NN++ Sbjct: 79 VDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNFNNYL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D+++ I ELGM+H GEIR L +++P+IAVIT I+ AHL F+ +EEIA Sbjct: 139 GLLINLASMADDMEYAILELGMNHKGEIRELVQILKPNIAVITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIFE K +N D + + + + L I +Y+FG N QL ++ Sbjct: 199 EAKCEIFENFSKNDIAVINADTNCYSKILSILKNLYIDRVYNFGILHNTHAQLVLYEHLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 Q ++ ++ KS+E+ I H A+N + L I+ IL D++ A L+ +P +GRG Sbjct: 259 AQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGKDIEIAANHLANIYPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +N +I + YNA+P SM+AA+ L Q+ + A++GDM E+G+ S+ Sbjct: 319 D----IINIQNARVICDYYNASPKSMQAALEYLKQVMAEN---KTAIIGDMLELGKNSKL 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +L + S ++L G + + D LP I Y + +D L I D++ Sbjct: 372 LHEELVPYILDVGCSKIYLVGVNTKYIYDLLPSKIAKKYFKNVDELITHITDLFKGNDLI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGLKLDKIVD 446 >gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] Length = 449 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 238/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGDLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEIND---KYKIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L ++L +A G++NN + Sbjct: 79 VDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSSKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----MINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L + I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIMHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides 2.4.1] Length = 477 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 179/474 (37%), Positives = 252/474 (53%), Gaps = 18/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + G + + F G+SID+RS+ P + F A+ DGH F+ Sbjct: 1 MTPLWTSDEAAATTGGRAT----RAFAATGVSIDTRSLGPGDLFVALTD-QRDGHAFVAE 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGK Sbjct: 56 ALARGAAAALVSRRPEGL--PEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARA 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ALG+ + +FG++ +AD++L + E + G + G H A N L T Sbjct: 234 AALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356 L L D+ A L ++ P GRG R R AL ++ F LID+++NANPASM A+ Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352 Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G Sbjct: 353 LELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + + GD+V+VK S +++ L Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466 >gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] Length = 472 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 174/474 (36%), Positives = 246/474 (51%), Gaps = 26/474 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT D A G + G + +G+SID+R+IA + F A+ DGHDF+ A+ K Sbjct: 3 LWTATDAAAATGGRTSG---EWAASGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDK 58 Query: 64 GAG--LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA LV + VA P+ V +VL AL L AAR R+ A +I ITGSVGKT+ Sbjct: 59 GAAAALVTHRPEGVAD----DAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML L + K +A SYNNH GVPLTLARMP D +F I E+GM+H GEI L + Sbjct: 115 TKEMLRTVLQAQGKIHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKM 174 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + A+ITT+APAHL F + EIA KA I EGL G + N D +++++ + A Sbjct: 175 AQLDAAMITTVAPAHLEAFGSVAEIAVEKAAITEGL--NGPLIANRDIETWDVIRDVAAA 232 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + FG +A F L + + + + G + + G H A N L + Sbjct: 233 AETQVTW-FGAQADA-FVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVA 290 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAI 357 + + AD+ A ++ + P GRG R L+ L D+++NANP SM+A++ Sbjct: 291 VCDAVGADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASL 350 Query: 358 SVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 VL+ P +GRRIAVLGDM E+G H D+A SL ++ V G + Sbjct: 351 EVLAATQPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRM 410 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464 +L D LP + E + G SL+D GDV++VK S +++ L Sbjct: 411 RSLYDVLPEGQRGQWVE-IAGELAGKAHSLIDAGDVILVKGSKGSKVSLIVDAL 463 >gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] Length = 450 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 154/436 (35%), Positives = 243/436 (55%), Gaps = 13/436 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 N I +S+ I + F A++G + DGHD+I A+ +GA V+V+ + + + + Sbjct: 22 TNEIQFNSKDIKKGDLFIALQG-NKDGHDYIQDAINQGASAVIVSKQVDIADKN---KII 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA+ R S A IAITGSVGKT+TKE L L T+A G++NNH Sbjct: 78 LVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNFNNH 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+ + LA MP D +F IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +E+I Sbjct: 138 LGLLINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEDI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIFE +K G +N D + ++ + + L I+ I++FGKS +A+ L ++ Sbjct: 198 AEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHNFGKSSSAELIL--YEIS 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 EQ ++ ++ +E I H A+N L I+ +L D++ A L +GR Sbjct: 256 GEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLNKAAGYLKNIPMTKGR 315 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 GK +N G +I + YNA+P SMKAA+ L Q+ + A++G+M E+G+ S+ Sbjct: 316 GK----IINIGNSRIICDYYNASPTSMKAALEYLKQMPA---TNKTAIIGEMLELGQNSE 368 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H +L + S V+L G + + DALP I Y + +D L + ++ Sbjct: 369 RLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIASTNDLFKNDEL 428 Query: 447 VVVKSSNSCGFYRLIN 462 +++K S ++I+ Sbjct: 429 ILIKGSRGIKLDKIID 444 >gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia rickettsii] gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 449 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELMLYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] Length = 458 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 179/472 (37%), Positives = 244/472 (51%), Gaps = 21/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ QA G + P V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MTALWTSEEIAQATGG--VASAPFA-VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ +++ P V D AL LA A+R R + ++ +TGSVGKT Sbjct: 58 FGQGAAGAIVSE-------AIAQPHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKT 110 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L AL I + + + SYNNH+GVPL+L+RMP + +G+FE+GM+H GE+ L Sbjct: 111 GTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236 T VRPH+A++T IAPAH+ F E+IA AKAEIFEGLE GT + YD L K Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A+ HA I +FG AD R+ + + L G + G H N Sbjct: 231 AEKHA---ARILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSN 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L V + D+ A AL+ GRG+R + G LIDESYNANP SM A Sbjct: 288 ALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 L Q+ GRRIAVLG M E+G+ S+ H L E L ++ + L G + L Sbjct: 348 ---TLKQLGREQAGRRIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGDEMQPLA 404 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +AL I + IQ + GD ++VK SN G RL+ L E+ Sbjct: 405 EALGGVIAFDHVPDAAKATDLIQGEMRAGDAILVKGSNGIGLSRLVAALQEK 456 >gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] Length = 449 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V+ I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli 8C-3] Length = 216 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/216 (56%), Positives = 157/216 (72%) Query: 41 EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 EAFFAIKG DGHD+ A+ GA L+VV+ + ++G L++P+ VDDVL AL +L Sbjct: 1 EAFFAIKGDRVDGHDYASMAMANGASLLVVSEARLPAMGRLTVPMIVVDDVLAALGRLGQ 60 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 A+R RS+A IIA+TGSVGKTTTKEML LS K +A + S+NNH GVPLTLARMP D Sbjct: 61 ASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDT 120 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D+G+FE+GM+H GEIR L ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE Sbjct: 121 DYGVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPG 180 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 G + LN D+ F L + +LG++ I+SFG+ A Sbjct: 181 GHVVLNRDNDQFNFLDRTAQSLGVEHIHSFGQHAKA 216 >gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, 6-diaminopimelate--D-alanyl ligase [Rickettsia montanensis] Length = 449 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGDLFIALQG-NRDGHDYVLDAIDKGAAAVIISKQVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA I ITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSSKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELMTHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] Length = 449 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIAKKYFKNVDELITHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] Length = 449 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 235/435 (54%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +EEIA Sbjct: 139 GMFINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] Length = 463 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 256/467 (54%), Gaps = 14/467 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 1 MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59 Query: 64 GAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120 GA VV+ V A G P+ V D L AL+ +A RLR ++A +IAITGS GKT Sbjct: 60 GAVAAVVDEAYVPTADCG----PLVAVKDTLQALHDIATM-RLRDTRAKVIAITGSAGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ Sbjct: 115 TTKYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + Sbjct: 175 IARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAE 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + I SFG AD Q+ + ++ S + ++ G+ ++ H+A ++ +T Sbjct: 235 SYCARII-SFGVGAGADVQIFRREEPSNS--ITLRCFGEELQCNLKSGARHLAYSVAITA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + D+ A A+ F P EGRGK + L+D++YNANP SM AAI L Sbjct: 292 AVGRAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S ++ RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ Sbjct: 352 SNLNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHILALYDVLPQ 411 Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + H+++ + L ++ + GD V+VK S + ++ LLE Sbjct: 412 HLSGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457 >gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] Length = 450 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 153/436 (35%), Positives = 242/436 (55%), Gaps = 13/436 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 N I +S+ I + F A++G + DGHD+I A+ +GA V+V+ + + + + Sbjct: 22 TNEIQFNSKDIKKGDLFIALQG-NKDGHDYIQDAINQGASAVIVSKQVDIADKN---KII 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA+ R S A IAITGSVGKT+TKE L L T+A G++NNH Sbjct: 78 LVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNFNNH 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+ + LA MP D +F IFELGM+H GEIR L +++P+IA+IT I+ AHL F+ +E+I Sbjct: 138 LGLLINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEDI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIFE +K G +N D + ++ + + L I+ I++F KS +A+ L ++ Sbjct: 198 AEAKCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHNFDKSSSAELIL--YEIS 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 EQ ++ ++ +E I H A+N L I+ +L D++ A L +GR Sbjct: 256 GEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLNKAAGYLKNIPMTKGR 315 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 GK +N G +I + YNA+P SMKAA+ L Q+ + A++G+M E+G+ S+ Sbjct: 316 GK----IINIGNSRIICDYYNASPTSMKAALEYLKQMPA---TNKTAIIGEMLELGQNSE 368 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H +L + S V+L G + + DALP I Y + +D L + ++ Sbjct: 369 RLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIASTNDLFKNDEL 428 Query: 447 VVVKSSNSCGFYRLIN 462 +++K S ++I+ Sbjct: 429 ILIKGSRGIKLDKIID 444 >gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 449 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 234/435 (53%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + F A++G + DGHD++L A+ KGA V+++ + + + Sbjct: 23 NEVQFNSKDVKKGNLFIALQG-NRDGHDYVLDAIDKGAAAVIISKRVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD AL K+A+ R SKA IAITGSVGKT+TKE L + L +A G++NN + Sbjct: 79 VDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEIR L +++P+I +IT I+ AHL F+ +EEIA Sbjct: 139 GMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNITMITNISEAHLEFFNSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF K +N D + + + + L I I+SFG+S +L ++ Sbjct: 199 EAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSFGRSAKTSAELILYENLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ +++ ++ K ++V I H +N L I+ IL D++ A L+ P +GRG Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + A++GDM E+GE S+ Sbjct: 319 E----IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEN---KTAIIGDMLELGENSKR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L + + S V+L G + + D LP I Y + +D L I +++ Sbjct: 372 LHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITHITDLFEGNELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] Length = 476 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 164/465 (35%), Positives = 256/465 (55%), Gaps = 10/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 14 MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 72 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA VV D V+ + P+ V D L AL+ +A RLR ++A +IAITGS GKTTT Sbjct: 73 GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATM-RLRDTRAKVIAITGSAGKTTT 129 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + Sbjct: 130 KYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIA 189 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + Sbjct: 190 RPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY 249 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I SFG AD Q+ + ++ S + + G+ ++ H+A ++ +T + Sbjct: 250 CARII-SFGVGVGADVQIFRREEPSNS--VTFRCFGEELQYNLKSGARHLAYSVAITAAV 306 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D+ A A+ F P EGRGK + A L+D++YNANP SM AAI LS Sbjct: 307 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 366 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + Sbjct: 367 LNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHL 426 Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+++ + L ++ + GD V+VK S + ++ LLE Sbjct: 427 RGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 470 >gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] Length = 463 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 164/465 (35%), Positives = 256/465 (55%), Gaps = 10/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 1 MWCAKSMGAAVRGLCLG-KDWTSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA VV D V+ + P+ V D L AL+ +A RLR ++A +IAITGS GKTTT Sbjct: 60 GAVAAVV--DEVSVPTADCGPLVAVKDTLRALHDIATM-RLRDTRAKVIAITGSAGKTTT 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + Sbjct: 117 KYVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIA 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + Sbjct: 177 RPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESY 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I SFG AD Q+ + ++ S + + G+ ++ H+A ++ +T + Sbjct: 237 CARII-SFGVGVGADVQIFRREEPSNS--VTFRCFGEELQYNLKSGARHLAYSVAITAAV 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D+ A A+ F P EGRGK + A L+D++YNANP SM AAI LS Sbjct: 294 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + Sbjct: 354 LNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHL 413 Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+++ + L ++ + GD V+VK S + ++ LLE Sbjct: 414 RGGHFADHGEAL-AHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457 >gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. TM1035] gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. TM1035] Length = 478 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 249/467 (53%), Gaps = 31/467 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW+ + + A QG S G+SID+R++ P + F A+ DGH+F+ A+ K Sbjct: 3 LWSAKEAVAATQGRSTA---DWQATGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + P+ V+DV L L AAR RS+A ++A+TGSVGKT+TK Sbjct: 59 GAAAALVSR--IPEGLPAEAPLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L +T+A SYNNH GVPLTLARMPVD +F + E+GM+H GEI L + R Sbjct: 117 EMLRDVLGHQGRTHAAEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLACMAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+AVITT+A AHL F I+ IA KA IFEGLE G +N D + +L+AK+ A Sbjct: 177 PHVAVITTVAAAHLEAFENIDGIAKEKASIFEGLEPGGVAVINADIATTPILRAKA-AQH 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQGKSMEVVHHGI-GYHMAQNM 296 I SFG ++ A +L + ++W +S V G+ G H A N Sbjct: 236 AARILSFGTARGAHHRLLNVELHDHVTVGHARAW-------RSPLVYKVGVPGRHFAMNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGF-FTLIDESYNANPAS 352 L L + +L D A+ L+ + P GRG R L+ G LID+++NANP S Sbjct: 289 LAVLAVAQVLGCDRAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTS 348 Query: 353 MKAAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 M AA+ VL+ P GRRIA+LGDM E+G + H LA++ + I+ + Sbjct: 349 MAAALEVLAAAHPRDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHC 408 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 G + AL D LP + + + + L + GDVV+VK S Sbjct: 409 VGPRMRALWDILPEARRGRWVASAEELAAQAHRLIDAGDVVLVKGSK 455 >gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 253/468 (54%), Gaps = 21/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G G+ + + IS D+RSI + F A+KG +DGHDF+ A KG Sbjct: 4 WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121 A VV+ D + P+ V D L AL+ +A + +R+ A +I ITGSVGKTT Sbjct: 64 AVAAVVSEDKYRNF-----PLIIVQDTLKALHNMA-SYYIRNILVNAKVITITGSVGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML L ++ G+ NN+IG+P T+ + P D + I E+GMS GEI+ L+ + Sbjct: 118 TKDMLNTVLLHYGVSHVNEGNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAVIT I PAH+ NFS + +IA AK EI G++ GT+ LN D+ ++ L + ++ Sbjct: 178 SNPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNAN- 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTL 300 + + SFGK+++A L + + ++++L G+ M G H A + L+ Sbjct: 237 ---RNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVT 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L D+ AL F EGRG ++ N LI++SYNANP SMKAAI L Sbjct: 294 AVLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTL 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S R++A+LGDM +G S FH +L + + N++ V G +L L LP Sbjct: 354 GTYS---NLRKVALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVGKFMLELNKLLPE 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +I + + + L + + + DV++VK S+ ++L+++EF Sbjct: 411 NIKGMHFDDSNQLKSNLANIVQGNDVILVKGSHGMR----MDLVVQEF 454 >gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] Length = 509 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 168/520 (32%), Positives = 266/520 (51%), Gaps = 74/520 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121 A +V+ S P+ V D L AL+ +A + +R+ A +IA+TGSVGKTT Sbjct: 64 AVAAIVSEGKYKSF-----PLMIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ +GEI+ L+ + Sbjct: 118 TKDMLHTVLSQYGVSHASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L SHA Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS------------------------------- 270 + + SFGK KNA+ L + E S Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYN 293 Query: 271 --WMEVQLQGKSMEVVHHGI-------------------GYHMAQNMLMTLGIVSILTAD 309 W+ G + V + + G H A ++L +V L D Sbjct: 294 KDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLD 353 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S Sbjct: 354 LSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ--- 410 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSE 428 R++A+LGDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I H+++ Sbjct: 411 RKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFND 470 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + L + + + + D ++VK S ++L++ EF Sbjct: 471 S-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 505 >gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter sp. SW2] gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter sp. SW2] Length = 478 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 183/475 (38%), Positives = 258/475 (54%), Gaps = 22/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT D A G S + +G+SID+R++ P + F A+K DGHDF+ A Sbjct: 1 MAPLWTSTDAATATGGRSTTVW---QAHGVSIDTRTLQPGDLFVALKDVR-DGHDFVAAA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ + + + P+ V DVL L L A R R++A +I +TGSVGKT Sbjct: 57 LAKGAAAALVSR--IPEGVAANAPLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLAR+P DF + E+GM+H GEI L Sbjct: 115 STKEMLRCMLLGQGSVHAAEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKS 239 + R H+A+ITTIA AHL+ F G+E IA KA I +GLE G L D + LL+A S Sbjct: 175 MARLHVALITTIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLRAAS 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++++ +FG +K+ADFQ+ ++ + ++ G + G H A N + Sbjct: 235 ---AVRSL-TFGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGC 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAA 356 L + L+ D A L + P GRG R R A++ F LID++YNANPAS+ AA Sbjct: 291 LAVAEALSLDPTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAA 350 Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRRIA+LGDM E+GE + H+ +A L IS + G Sbjct: 351 LEVLAASQPTDGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPL 410 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLL 464 + L DALP+ + T L L ++LVD GD+V+VK S +++ L Sbjct: 411 MRGLHDALPKRQRGEWVATAPEL-LARAATLVDAGDIVLVKGSKGIKVSLMVDGL 464 >gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 475 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 161/469 (34%), Positives = 248/469 (52%), Gaps = 20/469 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVN-------GISIDSRSIAPQEAFFAIKGPHYDGHDF 56 LWT +LL A GH G + G+SID+R++A + F A+ G + DGH Sbjct: 6 LWTGTELLTATGGHFRASPHPGAASCEGLRATGVSIDTRTLAAGDIFVALVGENSDGHAH 65 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I A+ GA +V+ + D G + VDD L ALN +A AR R +IA+TGS Sbjct: 66 ITRALDAGAAVVIAHRD----PGVEDARILLVDDTLSALNAMAAFARTRFAGRMIAVTGS 121 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKTTTK+ML AL + T+ + SYNNH GVPLTLAR+P F + E+GM++ GEI Sbjct: 122 VGKTTTKDMLRHALGACGPTHWAVASYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIA 181 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L +VRP +AVITTI AHL + +E IA K+++ L + G + D + + Sbjct: 182 PLAQMVRPDVAVITTITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTGMAIFA 241 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ G + +++ G + ++ +++ + + G S V H G HMA N Sbjct: 242 TQARNHGAR-LWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ L + AD+ A++ L+ F P GRG + G +L+DESYNA+ AS++A Sbjct: 301 LVALTAAYAVGADMACAVRGLADFRPGAGRGAIT--PILHGQASLLDESYNASVASIRAT 358 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALK 415 + VL Q+ RRIAVLGDM E+G ++ H L +V ++ V+ G ++ L Sbjct: 359 LDVLGQVPAR---RRIAVLGDMLELGAFARDQHESLLPDVREHADL--VFCCGPNMKYLF 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D LP S ++ L +++++ GD ++VK S ++++ L Sbjct: 414 DLLPPSRRGAWAPDAATLAPQVRAAMRAGDAILVKGSLGLKMRQVVDAL 462 >gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] Length = 463 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 177/470 (37%), Positives = 242/470 (51%), Gaps = 23/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT ++ +A G + V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MSDLWTSAEIAEATGGAASAPF---AVSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++ P V D AL L +A+R R +I +TGSVGKT Sbjct: 58 FAQGAAGAIVSD-------AVDHPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKT 110 Query: 121 TTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L +AL ++ + + + SYNNH+GVPL+LARMP D +GIFE+GM+H GE+ L Sbjct: 111 GTKEALYLALDRAAPGQAHRSVKSYNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--K 236 TH VRPH A++T IAPAH+ F +IA AKAEIFEGLE + YD L K Sbjct: 171 THQVRPHAAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAAAIIPYDSPHVATLYNK 230 Query: 237 AKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A+ HA I +FG S AD L + + + +L + G H N Sbjct: 231 AERHA---ARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSN 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L V + D+ A AL+ GRG+R + G LIDESYNANP SM A Sbjct: 288 ALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 L Q+ RRIAVLG M E+G S H LA+ L+ I L G + L Sbjct: 348 ---TLKQLGREHADRRIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAPLA 404 Query: 416 DALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 DAL ++ + H + + L I+ + GD ++VK SN G RL+ L Sbjct: 405 DALEGTMAYAHVPDAASAIPL-IKKEMRAGDAILVKGSNGIGLSRLVAAL 453 >gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 455 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 256/454 (56%), Gaps = 24/454 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W ++++ A G G N IS D+R+I + F A+KG ++DGHDF+ A K Sbjct: 4 WNTNNIIDATGGRG----KSGCHNLNISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKT 120 GA VV+ D ++ PV V D L AL+ +A + +R+ A +IAITGSVGKT Sbjct: 60 GAAAAVVSEDKYRNL-----PVIVVQDTLKALHDMA-SYYIRNVLVNAEVIAITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+ML LS ++ G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ Sbjct: 114 TTKDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P+IAVIT I P H+ NFS + +IA AK EI G++ GT+ LN D+ +++ L SH Sbjct: 174 ISNPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYL--LSH 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299 + + SFG+S++A L + + ++++L + + + G H ++L Sbjct: 232 V--DRDVVSFGRSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAV 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ L ++ AL F+ +GRG ++ N LID+SYNA+PASMKAAI Sbjct: 290 VAVIQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRT 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R++A+LGDM E+G S +FH+ L + + Y++ V+ G +L L LP Sbjct: 350 LGIYSNR---RKVALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLP 406 Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 +I H++++ + L + + + + DVV+VK S Sbjct: 407 GNIKGTHFNDS-NQLKSNLANIVQNNDVVLVKGS 439 >gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] Length = 478 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 169/461 (36%), Positives = 248/461 (53%), Gaps = 18/461 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G +IG +G+SID+R++AP + F A+K DGHDF+ A++K Sbjct: 3 LWTAKEAESATGGRAIG---DWSCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V V + + P+ V+DVL AL L AAR R++A ++A+TGSVGKT+TK Sbjct: 59 GAGAALVT--HVPEGVAENAPLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML + + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L + + Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++TT+A HL F+ + EIA KA +F+GL+ G +N D +L AK+ Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + FG+ ++L + + + + G + G H A N L L Sbjct: 237 LREV-EFGE-HGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359 + AD+ A +L + P +GRG R L+ LID+SYNANP SM AA+ V Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354 Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 L+ I +GRRIA LGDM E+G + H LA + + + + G + + Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L D LP ++ET L + S L GDVV+ K S S Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLS 455 >gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 509 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 168/520 (32%), Positives = 264/520 (50%), Gaps = 74/520 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121 A +V+ S P+ V D L AL+ +A + +R+ A +IA+TGSVGKTT Sbjct: 64 AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ + Sbjct: 118 TKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L SHA Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS------------------------------- 270 + + SFGK KNA+ L + E S Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYN 293 Query: 271 --WMEVQLQGKSMEVVHHGI-------------------GYHMAQNMLMTLGIVSILTAD 309 W+ G + V + + G H A ++L +V L D Sbjct: 294 KDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLD 353 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S Sbjct: 354 LSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ--- 410 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSE 428 R++A+LGDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I H+++ Sbjct: 411 RKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFND 470 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + L + + + + D ++VK S ++L++ EF Sbjct: 471 S-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 505 >gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] Length = 478 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 168/461 (36%), Positives = 246/461 (53%), Gaps = 18/461 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G +IG +G+SID+R++AP + F A+K DGHDF+ A++K Sbjct: 3 LWTAKEAESATGGRAIG---DWTCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V V + P+ V+DVL L L AAR R++A ++A+TGSVGKT+TK Sbjct: 59 GAGAALVT--HVPEGVAEDAPLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML + + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L + + Sbjct: 117 EMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQMAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++TT+A HL F+ + EIA KA +F+GL+ G +N D +L AK+ Sbjct: 177 PDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + FG+ ++L + + + + G + G H A N L L Sbjct: 237 LREV-EFGE-HGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAISV 359 + AD+ A +L + P +GRG R L+ LID+SYNANP SM AA+ V Sbjct: 295 QAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAALEV 354 Query: 360 LS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 L+ I +GRRIA LGDM E+G + H LA + + + + G + + Sbjct: 355 LAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLMKS 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L D LP ++ET L + S L GDVV+ K S S Sbjct: 415 LYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLS 455 >gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 489 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 244/472 (51%), Gaps = 27/472 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW+ ++ +A G + G +G+ +DSR + P + F A+KG DGH FI A Sbjct: 26 LWSADEIAEATGGVASGDFQ---CSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAA 82 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + P V+D AL+ LA AAR R +AT IA+TGSVGKT K Sbjct: 83 GAAAAIVDR-------PIDWPHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVK 135 Query: 124 EMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 E + AL +S + + + SYNNH+GVPL++ARM +G+FE+GM+H GEI L Sbjct: 136 EAIFSALDRASRGQAHRSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAPLADH 195 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRP +AVITTIAPAH+ N +E IA KA+IF GL+ G + D FE LKA + A Sbjct: 196 VRPDVAVITTIAPAHIENLGSLEAIADEKAQIFTGLKPGGAAIIPADSEQFERLKAHAEA 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + ++SFG++ +A +L + S + Q+ + G H N L Sbjct: 256 AGAE-VFSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAV 314 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + + D+ A AL +GRG R+ A G LIDESYNANPASM+A ++ Sbjct: 315 MACIYAVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQ 374 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q RRIAVLG M E+GE S FH L E + + + L G + L + Sbjct: 375 LGQTP---ASRRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKMG 431 Query: 420 RS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + H + + + + L GD ++VK SN+ G RL++ Sbjct: 432 TAHANGLGNPPAFAHCAGPAEAIAALEEFGLNAGDAILVKGSNAVGLGRLVD 483 >gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] Length = 478 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 247/463 (53%), Gaps = 22/463 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G ++G +G+SID+R++ + F A+K DG DF+ A++K Sbjct: 3 LWTATEAAAATGGRAVG---DWSCDGVSIDTRTLQAGDLFVALKDVR-DGQDFVATALEK 58 Query: 64 GAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAG +V+ D VA P+ VDDVL L L AAR R+ A ++A+TGSVGKT+ Sbjct: 59 GAGAALVSRVPDGVAD----DAPLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML + + +A + SYNNH GVPLTLARMPVD D+ + E+GM+H GEI L L Sbjct: 115 TKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAIL 174 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P A++TT+A HL F + IA KA IF+GLE G +N D +L AK+ Sbjct: 175 TKPDAAMVTTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAVD 234 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++ I FG++ F+L+ + + + ++ G + G H A N L L Sbjct: 235 RRLRDI-EFGENAY-HFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGALA 292 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAAI 357 + + AD+ A +L + P +GRG R L+ + +LID+SYNANP SM AA+ Sbjct: 293 VAQAMGADLALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAAL 352 Query: 358 SVLS------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 VL+ I +GRRIA LGDM E+G + H LA + + + + G + Sbjct: 353 EVLAASEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPLM 412 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 +L D +P ++ T L + + L GDVV+ K S S Sbjct: 413 RSLYDLIPAHQRGDWAATSAELLPGLGAHLDSGDVVLAKGSLS 455 >gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dinoroseobacter shibae DFL 12] gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dinoroseobacter shibae DFL 12] Length = 479 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 237/450 (52%), Gaps = 18/450 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 V G+SID+R +AP + F A+ DGHDF+ A+ GAG +V+ + VA P Sbjct: 24 VTGVSIDTRELAPGDLFVALTA-ARDGHDFVAQALAAGAGAALVSRIPEGVAE----DAP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V DV AL L A R R++A +IAITGSVGKT+ KEM+ AL+S + +A S+N Sbjct: 79 LLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH GVPLTLARMP + + E+GM+H GEI L + RPH A+ITTIA AHL +E Sbjct: 139 NHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSLE 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA KA IFEGLE G + D +L+A + G + I SFG +L + Sbjct: 199 AIAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGAR-IESFGTGAGNTHRLSDVQ 257 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + QL G M + G H + L L V+ + AD A+ AL + P Sbjct: 258 AVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMALGAWAPPS 317 Query: 325 GRGKRYRCALNQGF----FTLIDESYNANPASMKAAISVLSQISPH------GEGRRIAV 374 GRG R R L+ LID+++NANP SM AA+ +L+Q +P +GRRIA+ Sbjct: 318 GRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIAKGRRIAI 377 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+G + H LA ++ I+ V G + AL ALP + ET L Sbjct: 378 LGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPEDKRGRWVETAQALV 437 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + GDVV+VK S +++ L Sbjct: 438 PHAHALVDAGDVVLVKGSKGSRVSLVVDAL 467 >gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 469 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 164/464 (35%), Positives = 252/464 (54%), Gaps = 8/464 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT L A G G P V G+SID+R++AP + F A+ G + DGH + A Sbjct: 1 MTVLWTRAALQDATGGTFTGQAPVA-VTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +++ V S + V D + ALN L AR R ++A+TGSVGKT Sbjct: 60 LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML +AL +I T+ SYNNH GVPLTLAR+P+D F + E+GM+H GEI L Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP +A++TTIA AHL + +E IA K+++ L G I + DD+ + + A+ Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAG-IAIVPDDATGQPIFAEQA 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T++ G+ ++ + +E S V + G+S+ V + G H+ +N L Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L AD+ TA AL+ F P GRG + G L+DESYNA+ S++++++VL Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALK--PILGGRAALLDESYNASVLSVRSSLAVL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + RR+AVLGD+ E+G +++ H L + L + V+ SG + L D LP Sbjct: 357 GLLP---ATRRMAVLGDIRELGAFARAEHESLLSAV-LAHADLVFCSGPDMKYLFDLLPP 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++ L ++ ++ DV++VK S ++++L Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVSVL 456 >gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 469 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 163/452 (36%), Positives = 247/452 (54%), Gaps = 8/452 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT L A G G P V G+SID+R++AP + F A+ G + DGH + A Sbjct: 1 MTVLWTRAALQDATGGTFTGQAPVA-VTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +++ V S + V D + ALN L AR R ++A+TGSVGKT Sbjct: 60 LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML +AL +I T+ SYNNH GVPLTLAR+P+D F + E+GM+H GEI L Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP +A++TTIA AHL + +E IA K+++ L G I + DD+ + + A+ Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAG-IAIVPDDATGQPIFAEQA 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T++ G+ ++ + +E S V + G+S+ V + G H+ +N L Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L AD+ TA AL+ F P GRG + G L+DESYNA+ S++++++VL Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALK--PILGGRAALLDESYNASVLSVRSSLAVL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + RR+AVLGD+ E+G +++ H L + L + V+ SG + L D LP Sbjct: 357 GLLP---ATRRMAVLGDIRELGAFARAEHESLLSAV-LAHADLVFCSGPDMKYLFDLLPP 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 S ++ L ++ ++ DV++VK S Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGS 444 >gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides WS8N] gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides WS8N] Length = 477 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 182/476 (38%), Positives = 255/476 (53%), Gaps = 22/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + A G + + F G+SID+RS+ P + F A+ DGH F+ Sbjct: 1 MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALAD-QRDGHAFVAE 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ +GA +V+ G L P+ V DVL L L AAR R++A ++ +TGSV Sbjct: 56 ALARGAAAALVSR----RPGGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSV 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI Sbjct: 112 GKTSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAP 171 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A Sbjct: 172 LSRLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAA 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ ALG+ + +FG++ +AD++L + E + G + G H A N L Sbjct: 232 RAAALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNAL 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMK 354 TL L D+ A L ++ P GRG R R AL ++ F LID+++NANPASM Sbjct: 291 ATLAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMA 350 Query: 355 AAISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A++ +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G Sbjct: 351 ASLELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVG 410 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + + GD+V+VK S +++ L Sbjct: 411 PRMRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466 >gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] Length = 493 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 244/479 (50%), Gaps = 33/479 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL +H +AI G F V G+ +DSR + + F A+KG DGH F+ A Sbjct: 23 PLTLWHS--KAIAEAVGGTASSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAF 80 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +V+ + P V+D AL LA AAR R++A II +TGSVGKT Sbjct: 81 ANGAAAAIVDR-------PVDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTG 133 Query: 122 TKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KE + +L + A SYNNH+GVPL+LARMP FGIFE+GM++ GEI LT Sbjct: 134 VKEAIFASLERASRGAAHRSTRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLT 193 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VRPH+AVITTIAPAH+ N +E IA AKAEIF GLE G + D FE L+ + Sbjct: 194 TQVRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEPGGVAVIPADSEHFERLRLAA 253 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-------EVQLQGKSMEVVHHGIGYHM 292 + ++ SFG++ NAD +L + + + G+ V G H Sbjct: 254 LRMS-ASVVSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAE-PGDHW 311 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + V D+ A AL+ +GRG R+ G LIDESYNANPAS Sbjct: 312 VINSLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPAS 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+A ++ L Q RRIAVLG M E+G+ + FH L+E L ++ + L G + Sbjct: 372 MRATLAQLGQTP---SSRRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMR 428 Query: 413 ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 AL L + H + + + L + +V GD V+VK SNS G +L++ Sbjct: 429 ALARELGKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKGSNSVGLGKLVD 487 >gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Rhodobacter sphaeroides KD131] gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase precursor [Rhodobacter sphaeroides KD131] Length = 477 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 181/474 (38%), Positives = 253/474 (53%), Gaps = 18/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + A G + + F G+SID+RS+ P + F A+ DGH F+ Sbjct: 1 MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALTD-QRDGHAFVAE 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGK Sbjct: 56 ALARGAAAALVS--RCPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARA 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ALG+ + +FG+S +AD++L + E + G + G H A N L T Sbjct: 234 AALGVPAV-TFGQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356 L L D+ A L ++ P GRG R R AL ++ F LID+++NANPASM A+ Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352 Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G Sbjct: 353 LELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + + GD+V+VK S +++ L Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466 >gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Mississippi] Length = 456 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 243/439 (55%), Gaps = 10/439 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ISID+R++ P + F AIKG ++DGH F+ A KGA VV D V+ + P+ V Sbjct: 20 ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV--DEVSVPTADCGPLVAVK 77 Query: 90 DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL+ +A RLR ++A +IAITGS GKTTTK +L+ ALS K Y +YNN IG Sbjct: 78 DTLRALHDIATM-RLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNNLIG 136 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL A + D +F + E+GM+ GE+ L+ + RP +AVIT + PAHL F +E + + Sbjct: 137 MPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITNVGPAHLEFFESVEGVLA 196 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+F ++ LN+D ++ ++A + + + I SFG AD Q+ + ++ S Sbjct: 197 AKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYCARII-SFGVGAGADVQIFRREEPSN 255 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + G+ ++ H+A ++ +T + + D+ A A+ F P EG K Sbjct: 256 P--VTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLTQARGAMEEFVPLEG-SK 312 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + L+D++YNANP SM AAI LS ++ RR+A+LGDM E+G S + Sbjct: 313 VHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVAILGDMLELGSGSCHY 372 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVV 447 H L E + NI V+ G H+LAL D LP+ + H+++ + L ++ + GD V Sbjct: 373 HRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLRGGHFADHGEAL-AHLERIIKPGDGV 431 Query: 448 VVKSSNSCGFYRLINLLLE 466 +VK S + ++ LLE Sbjct: 432 LVKGSFATKLSLVVKHLLE 450 >gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17029] gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17029] Length = 477 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 180/474 (37%), Positives = 253/474 (53%), Gaps = 18/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + A G + + F G+SID+RS+ P + F A+ DGH F+ Sbjct: 1 MTPLWTSDEAAAATGGCAT----RAFAATGVSIDTRSLGPGDLFVALAD-QRDGHAFVAE 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGK Sbjct: 56 ALARGAAAALVSRRPEGL--PEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 114 TSTKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLS 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 174 RLARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARA 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ALG+ + +FG++ +AD++L + E + G + G H A N L T Sbjct: 234 AALGVPAV-TFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALAT 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAA 356 L L D+ A L ++ P GRG R R AL ++ F LID+++NANPASM A+ Sbjct: 293 LAAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAAS 352 Query: 357 ISVLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G Sbjct: 353 LELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +ALPR + ET L + + GD+V+VK S +++ L Sbjct: 413 MRALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDAL 466 >gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Brevundimonas sp. BAL3] gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Brevundimonas sp. BAL3] Length = 476 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 234/454 (51%), Gaps = 14/454 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT ++ A G G + G++ +SR I + F A+KG DGH+F +A Sbjct: 7 RPLWTAAEVAAATGGVLHG--DDRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAF 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120 GA +V V S+ +P D L L L VAAR R+ A+TGSVGKT Sbjct: 64 AAGAAAALVERP-VEGGASVVVP-----DTLHGLEALGVAARERAPHVKRGAVTGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + + + L +A I SYNNHIGVPLTLARMPV+ +FE+GM+ GEI L+ Sbjct: 118 SVTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSR 177 Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V PH A +TT+ P H+ F+ G +A KA IF+GL GT N D +F +L + Sbjct: 178 FVAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAA 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+G + + FG D +L ++ +E + + +L G+ ++ G H N L Sbjct: 238 RAVGARLVV-FGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCV 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ L ++T ++AL+ F P GRG+ A+ G FTLIDESYNANP SM A Sbjct: 297 LLMLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKS 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L GRRI VL DM E+G+ S + H LA+ + + V +G + L DALP Sbjct: 357 LGARPT--AGRRIVVLTDMLELGDQSHALHEGLAQPIEAAGLDLVHAAGPEMRRLYDALP 414 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 S + ET L + GD+V+VK SN Sbjct: 415 ASRRGLWRETAVELAAEASALAEAGDIVMVKGSN 448 >gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseomonas cervicalis ATCC 49957] gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseomonas cervicalis ATCC 49957] Length = 395 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/341 (39%), Positives = 196/341 (57%), Gaps = 4/341 (1%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTKEML L+++ T+A + SYNN G+PLTLARMP D +G+ E+GM+H Sbjct: 29 ITGSVGKTTTKEMLRHGLAALAPTHAAVASYNNQWGLPLTLARMPRDSAYGVLEIGMNHR 88 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L L PH+A ITT+ AH+ + +EEIA KA+I +GL + L D + F Sbjct: 89 GEIAPLARLAAPHVAAITTVEAAHIGHLGSLEEIAEEKADIMQGLAPGAPVVLPRDSASF 148 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L ++ A G++ + +FG A+++L ++ +E + L+G++ + G H+ Sbjct: 149 ARLAGRAEAAGLRMV-TFGADPAAEYRLLDYRGGAESGLATLSLRGETHALALAAPGRHL 207 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N L + + L AD + AL+ F P GRG R L G LID+SYN P + Sbjct: 208 ALNALAAIALAEALGADRAGFLAALTEFRPGAGRGGRVVLDLPGGSALLIDDSYNGQPPA 267 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSGFHV 411 M+A + VL P GRRIAVLGDM E+GE + H L +VL+ ++ V+ G + Sbjct: 268 MRAGLGVLGSQIPGPGGRRIAVLGDMRELGEHGPALHASLLPDVLAAADM--VFCCGALM 325 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 L DALP + + ++ D L ++ ++ GDV++VK S Sbjct: 326 RGLYDALPENRRAAHRDSSDELAPLVRQAVRPGDVILVKGS 366 >gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 483 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 174/471 (36%), Positives = 242/471 (51%), Gaps = 23/471 (4%) Query: 3 PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PLWT ++ G +VP ++ I++DSR F A+ G DGHDF+ A Sbjct: 4 PLWTVDEICTHTSGIMAETAMVPAP-IDHITMDSRMCRKGSLFVALPGAQADGHDFLAKA 62 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A +V T D+ + + +P D L AL LAVA R R K +IAITGSVGK Sbjct: 63 ANADASAALVTTPDISIELAQIIVP-----DCLAALTALAVAGRNRFKGAMIAITGSVGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKEML L + +++A G++NNHIG+PL+LA +P F I E+GM+H GEI LT Sbjct: 118 TGTKEMLAHLLRACGQSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKLT 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP IA+IT IA H +F I+ IA+AKAEIFEG+ GT LN DD FF L + Sbjct: 178 RIARPDIAMITRIAAVHSGHFESIDAIANAKAEIFEGMHG-GTAVLNIDDPFFPHLSQAA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLM 298 + GI I +FG +A+F L +Q ++ +E L G + H G+ G H A N L Sbjct: 237 KSAGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVS-FHLGMSGQHWAMNSLG 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V L D A +L+ F GRG + N ++ID+SYNA+PASM AA++ Sbjct: 296 VLACVHALGEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALA 355 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLA-L 414 + H + I VL DM E+G S + H D+ ++ HV G H A + Sbjct: 356 PFLTGARHTD---IMVLSDMLELGSHSAAAHDDIVATVASIGPRHVIAIGDDFAHAFAKV 412 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I + D L +Q+ D + +K S G +R+ N +L Sbjct: 413 AHDCDVIIANDPAHATDMLARLVQAD----DTIFIKGSKGSGAWRVTNAVL 459 >gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington] gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl ligase [Rickettsia typhi] gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington] Length = 448 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 233/435 (53%), Gaps = 12/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + + F A++G DGHD+I A+ KGA V+V+ + + + Sbjct: 23 NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D AL K+A+ R SKA IAITGSVGKT+TKE L I L +A G++NN++ Sbjct: 79 VNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNFNNYL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEI L +++P+IA+I+ I+ AHL F+ IEEIA Sbjct: 139 GLLINLASMADDTEYAIFELGMNHKGEISELVQILKPNIAMISNISEAHLEFFNSIEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF+ K +N ++ + + + L I IYSFG+SK A +L +K Sbjct: 199 EAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSFGRSK-ASAELIFYKTLG 257 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ ++ + K +++ I H A N L I+ IL D++ A L+ +GRG Sbjct: 258 EQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLIIDILGKDIEIAANYLADISITKGRG 317 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N +I + YNA+P SMKAA+ L Q+ + +++G+M E+G SQ Sbjct: 318 E----IINIQNSRVICDYYNASPQSMKAALEYLKQVPADN---KTSIIGEMLELGWNSQR 370 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +L + + V+L G + + D LP I + + ++ + I +++ Sbjct: 371 LHEELVPYILDSGCTKVYLIGAYTKYIYDLLPTKISKKFFKNVEEFIMHITDLFEYSELI 430 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 431 LIKGSRGVKLDKIVD 445 >gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF) [Rickettsia prowazekii str. Madrid E] gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL- 2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF) [Rickettsia prowazekii] gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia prowazekii Rp22] Length = 449 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 230/435 (52%), Gaps = 11/435 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + +S+ + + F A++G DGHD+I A+ KGA V+V+ + + + Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKD---KIIL 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ AL K+A+ R SKA IAITGSVGKT+TKE L I L +A G++NN++ Sbjct: 79 VNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNFNNYL 138 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ + LA M D ++ IFELGM+H GEI L +++P+IA+I I+ AHL F +EEIA Sbjct: 139 GLLINLASMADDTEYAIFELGMNHQGEISELVQILKPNIAMINNISEAHLEFFHSLEEIA 198 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF+ K +N ++ + + + L I IYSFG S A +L +K Sbjct: 199 EAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSFGHSSKASAKLILYKTLG 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ ++ + K +++ I H A N L I+ IL D++ + K L+ +GRG Sbjct: 259 EQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKDIEISAKYLADIALTKGRG 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 K +N +I + YNA+P SMKAA+ L Q+ + +++G+M E+G SQ Sbjct: 319 K----IINIQNSRVICDYYNASPQSMKAALEYLKQVPADN---KTSIIGEMLELGWNSQR 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +L + + V+L G + + D LP I + + ++ L I +++ Sbjct: 372 LHEELVPYILDAGCTKVYLVGAYTKYIYDLLPNKISKKFFKNVEELITHITDLFEYSELI 431 Query: 448 VVKSSNSCGFYRLIN 462 ++K S ++++ Sbjct: 432 LIKGSRGVKLDKIVD 446 >gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] Length = 502 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 155/514 (30%), Positives = 255/514 (49%), Gaps = 71/514 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W L +A+ I I N + +S+ + + F A+KG + DGHD++L A+ K Sbjct: 2 IWNSETLSKAL---GITISNSINCNEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDK 57 Query: 64 GAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA ++V+ D+V + VDD AL K+A+ R SKA IAITGSVGKT+ Sbjct: 58 GANAIIVSKHIDIVDKN-----KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTS 112 Query: 122 TKEMLTIALS-------------------------------------SIKKTY------- 137 TK L L+ S + TY Sbjct: 113 TKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVS 172 Query: 138 -------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 A G++NNH+G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT Sbjct: 173 YIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 232 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ AHL F+ +E+IA AK EIFE K +N + + + + + L I IY+F Sbjct: 233 NVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYNF 292 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G S N +L + +Q ++ ++ K++E+ I H A+N + L I++IL ++ Sbjct: 293 GASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNL 352 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Q+ Sbjct: 353 DIAANHLANISPTKGRGE----MINIQNCCVICDYYNASPQSMKAALEYLKQVPAEN--- 405 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 + A++GDM E+G+ S++ H +L + + S V+L G + + + LP I Y + + Sbjct: 406 KTAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIYNLLPFKIAKKYFKNV 465 Query: 431 DGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLIN 462 D L I + + +++++K S ++++ Sbjct: 466 DELITHITVTDLFKNNELILIKGSRGIKLDKIVD 499 >gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Brevundimonas subvibrioides ATCC 15264] Length = 474 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 232/456 (50%), Gaps = 14/456 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT ++ A G G V F NG++ +SR I P + F A+KG DGHDF A Sbjct: 7 PLWTAQEIAVATGGRIEGGV---FDANGLTYNSREIEPGDLFLALKG-ARDGHDFAASAF 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII-AITGSVGKT 120 GA +V + P V D L AL L AAR R+ A+TGSVGKT Sbjct: 63 AAGAAGALVERPVDGG------PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + + + L +A I SYNNHIGVPLTLARM V+ +FE+GM+ GEI L Sbjct: 117 SVTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMHPSVERAVFEIGMNAPGEIGPLAR 176 Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V+PH A +TT+ P H+ F+ G +A+ KA IF+GL G +N D+ + ELL + Sbjct: 177 MVQPHAACVTTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + +FG D +L + E + + ++ G++ G+H N L Sbjct: 237 LRAGAR-VATFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAV 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ L V+TA++AL+ F P +GRG+ L +G FTLIDESYNANP SMKA Sbjct: 296 ILMLDALDVPVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLS 355 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L GRR+ VL DM E+G+ S++ H LA + I V +G + L DA+ Sbjct: 356 LGAKPVERRGRRVVVLTDMLELGDQSEALHAGLATAIEAAAIDVVHAAGPQMRHLYDAIS 415 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 ++ T L D+V+VK SN Sbjct: 416 PERRGVWAGTAAALADQAADLAGPDDIVMVKGSNGS 451 >gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 510 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 248/487 (50%), Gaps = 40/487 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW D+ A G G V+G + DSR + + F A+KG + DGH F+ A K Sbjct: 20 LWRAADIAAATGGKLGG--GDFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAFLK 77 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121 GA +V +++ P V D + L LA AAR R +I +TGS GKT Sbjct: 78 GAAGALVEQ-------AVAHPHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGKTG 130 Query: 122 TKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KE L AL SS + + + SYNNH+GVPL+LARMP FG+FE+GM+H GE+ LT Sbjct: 131 VKEALFAALDRSSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHAGELSALT 190 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KA 237 LVRPH+A++TTIAPAH+ +FSG IA AKAEIFEGLE G + D LL A Sbjct: 191 RLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVAHA 250 Query: 238 KSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVH-----HGIGYH 291 + HA + +FG +++AD +L + + + + ++ G H Sbjct: 251 QRHA---GLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAH 307 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYN 347 A N L + V+ + D+ A AL+ GRG R+ A + G + LIDESYN Sbjct: 308 WAANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYN 367 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANPASM A I+ L RR+AVLG M E+GE ++H LAE ++ I V L Sbjct: 368 ANPASMSATIAALGATPAR---RRVAVLGAMRELGEGEAAYHAALAEPIAAAGIDRVVLV 424 Query: 408 GFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G + AL DAL ++ VH + + + GD ++VK SNS G Sbjct: 425 GAEMAALADALGKNAQGALAAGFDMVHVATAAEAAECLAAAGPQGGDAILVKGSNSVGLG 484 Query: 459 RLINLLL 465 L+ L+ Sbjct: 485 ALVKALI 491 >gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] Length = 490 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 153/470 (32%), Positives = 245/470 (52%), Gaps = 23/470 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+++A G + + SIDSRS + F I G D H FI A++ Sbjct: 28 TIKDIVEACSGQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKING 87 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 D G + P V D + A+ K+ R R ++A+TGSVGKTTT+EM Sbjct: 88 ATFTSEHDEPLE-GFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTREM 146 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L+S KK + IG+ N+ IGVPLTL+ + + + + E+GMS G+I LT+++RP+ Sbjct: 147 ISTVLASQKKVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERGQIEKLTNMIRPN 206 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV+T I +H++ E I K +I +GL + G +FLN DD F + K L K Sbjct: 207 VAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLAPYRGK---LSHK 263 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 T + +G K D++ Q+ + E ++ K MEVV +G H +N L+ L Sbjct: 264 TFF-YGMDKACDYRAENVHVKDGQTIFHFFYKEGKVV-KDMEVVLGTMGEHNVRNALVAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + D+ A KAL FH G+R + + TLID++YNA+P SMKA++SVL Sbjct: 322 GVAHQMGLDMKAAAKALVTFH-----GQRQQMHTLKS-CTLIDDTYNASPDSMKASVSVL 375 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKD 416 S + +GRRIA L DM E+GE + +H ++ + ++ + V LS + ++D Sbjct: 376 SSMEG-VKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGELSEEILKGVED 434 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 R + H+ E+ D L ++ + + DV+++K+SN + L+ Sbjct: 435 NNERIVVKHF-ESRDALKDYLLTYVHPDDVLLLKASNGMKLKEIAEAFLQ 483 >gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] Length = 948 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 141/442 (31%), Positives = 231/442 (52%), Gaps = 15/442 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + SI+S++I + FFAIKG + DG+ ++ A Q GA LV+ N S Sbjct: 510 IKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQ------KKSKKKI 563 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L L + + R + II+ITGS GKT+ KE+L LS I S+NN Sbjct: 564 VVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPKSFNNK 623 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPL+L + + +FGIFE+GM GEI +L+ +++P + VIT I+ AH+ NF I ++ Sbjct: 624 FGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQV 683 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK+EI ++ G + LN DD F+ L K I++F K+K+A+ L K + Sbjct: 684 ALAKSEIINNIKTNGILVLNQDDRFYN-LHKKIAKKKNINIFTFSLKNKSANIYLEKIVK 742 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE- 324 + + V + K + I + +N+L T+ I+SI DT ++F E Sbjct: 743 EKSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFK---DTQKLEKNIFLDYEI 799 Query: 325 --GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GRG + LN+ ++DESYN+NP S+K+AI ++ +++ +L DM E+G Sbjct: 800 AKGRGDIIKVKLNKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKKL-ILSDMLELG 858 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S+ H++ + ++ ++ ++ + G H+L L + + + I++ L Sbjct: 859 NYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDLN 918 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + D +++K SNS G L+N L Sbjct: 919 NNDYLMIKGSNSTGLNNLVNKL 940 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 107/477 (22%), Positives = 190/477 (39%), Gaps = 72/477 (15%) Query: 16 GHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 G+ + + + F N G+S +S FFAI+G DG FI HA++KGA V+++ Sbjct: 4 GNFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGA-TVIIS 62 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 I + + +V L++L+ + +IA+TG+ GK++ + L+ Sbjct: 63 EQKFEGIKN-KVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLN 121 Query: 132 SIKKTYACIGSY-----------NNHIGVPLTLARM-----PVDVDFGIFE-----LGMS 170 K A IG+ +N P+ L+++ +D I E L + Sbjct: 122 LGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGLKQN 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDD 229 L ++F T + T ++ HL + +K +FE L K GTI D Sbjct: 182 RLDGLKFNT-------TIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIIT--DS 232 Query: 230 SFFELLKAKSHALGIK-TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 E K +L K + + KS N Q R KQ +E++ K ++ Sbjct: 233 KIPEYKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQI-----VEIKYNQKHYKLQ 287 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + IG +N+ M + D +K S GR ++ N L Sbjct: 288 INLIGKIQLKNLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVIL--- 344 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++K + L+ + E +RI V G C G + + ++ + Y Sbjct: 345 DYAHTPDALK---TCLTNLKEQFENKRIFIVFG--CG-GNRDKDKRPIMGKIANQY-CDR 397 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------IQSSLVD---GDVVVV 449 V+L+ + +D P+ I + +T+D +F I +++D GD++V+ Sbjct: 398 VYLTDDNP---RDENPKKIRLAIKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVI 451 >gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] Length = 457 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 241/474 (50%), Gaps = 42/474 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + +A G I + + I IDSR + + F AI G DGH+FI AV+ GA Sbjct: 5 TLAQIAEAASGKIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVENGA 64 Query: 66 GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTK 123 V+V+ I S + V VDD AL +A R++ K I AITGSVGKT+TK Sbjct: 65 KAVIVDR----QINDYSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGKTSTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L+ KT G+YNN IG+PLTL R+ +F + E+GMS GEI L L R Sbjct: 121 DMIAAVLAQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLAELAR 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT + PAH+ IE +A+AK E+ + L+K+GT LNYD+ + + ++ Sbjct: 181 PQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAENFNS-- 238 Query: 244 IKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG S AD Q+ K+ + + ++ QGK ++ + G H N L + Sbjct: 239 --KLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYLNKPGKHNIYNALAAI- 295 Query: 302 IVSILTADVDTAIKALSVFHPK---EGRGK------RYRCALNQGFFTLIDESYNANPAS 352 AI L+ +PK +G K R + +I++SYNANP S Sbjct: 296 -----------AIGFLNNMNPKGIQDGLSKIDFSDLRMEIKELENGAIVINDSYNANPIS 344 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 ++AA+ VL+++ R+IAVL M E+G++ + H+++ E ++ NI + G Sbjct: 345 VRAALDVLAEMKGK---RKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGEIAE 401 Query: 409 -FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 A + A+P +++ L F++ +L D++++K S S +++ Sbjct: 402 LIAEGAERTAMPVEKIYSFADKASTL-KFLKDNLKKDDLLLIKGSRSNQMEKIV 454 >gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 446 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNRAV-----KTTLPLICVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + S+ Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRPLAHS---RRIISFGINQPADVMAKNITLNSDG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L P +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446 >gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 446 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + S+ Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L P +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446 >gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLIFVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + S+ Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L P +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSFSMRMGNIAHALLEE 446 >gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLIFVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + S+ Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L P +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446 >gi|71082737|ref|YP_265456.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Candidatus Pelagibacter ubique HTCC1062] gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1062] Length = 948 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/442 (31%), Positives = 230/442 (52%), Gaps = 15/442 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + SI+S++I + FFAIKG + DG+ ++ A Q GA LV+ N S Sbjct: 510 IKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQ------KKSKKKI 563 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L L + + R + II+ITGS GKT+ KE+L LS I S+NN Sbjct: 564 VVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPKSFNNK 623 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPL+L + + +FGIFE+GM GEI +L+ +++P + VIT I+ AH+ NF I ++ Sbjct: 624 FGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQV 683 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK+EI ++ G + LN DD F+ L K I++F K+K+A+ L K + Sbjct: 684 ALAKSEIINNIKTNGILVLNQDDRFYN-LHKKIAKKKNINIFTFSLKNKSANIYLEKIVK 742 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE- 324 + + V + K + I + +N+L T+ I+SI DT ++F E Sbjct: 743 ERSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFK---DTQKLEKNIFLDYEM 799 Query: 325 --GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GRG + L + ++DESYN+NP S+K+AI ++ +++ +L DM E+G Sbjct: 800 TKGRGDIIKVKLKKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKKKL-ILSDMLELG 858 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S+ H++ + ++ ++ ++ + G H+L L + + + I++ L Sbjct: 859 NYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDLN 918 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + D +++K SNS G L+N L Sbjct: 919 NNDYLMIKGSNSTGLNNLVNKL 940 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 108/477 (22%), Positives = 191/477 (40%), Gaps = 72/477 (15%) Query: 16 GHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 G+ + + + F N G+S +S FFAI+G DG FI HA++KGA V+++ Sbjct: 4 GNFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGAT-VIIS 62 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 I + + +V L++L+ + +IA+TG+ GK++ + L+ Sbjct: 63 EQKFEGIKN-KVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLN 121 Query: 132 SIKKTYACIGSY-----------NNHIGVPLTLARMPVD-----VDFGIFE-----LGMS 170 K A IG+ +N P+ L+++ D +D I E L + Sbjct: 122 LGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGLKQN 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDD 229 L ++F T + T ++ HL + +K +FE L K GTI D Sbjct: 182 RLDGLKFNT-------TIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIIT--DS 232 Query: 230 SFFELLKAKSHALGIK-TIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 E K +L K + + KS N Q R KQ +E++ K ++ Sbjct: 233 KIPEYKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQI-----VEIKYNQKHYKLK 287 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + IG +N+ M + D +K S GR ++ N L Sbjct: 288 INLIGKIQLKNLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVIL--- 344 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++K + L+ + E +RI V G C G + + ++ + Y Sbjct: 345 DYAHTPDALK---TCLTNLKEQFENKRIFIVFG--CG-GNRDKDKRPIMGKIANQY-CDR 397 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------IQSSLVD---GDVVVV 449 V+L+ + +D P+ I + +T+D +F I +++D GD++V+ Sbjct: 398 VYLTDDNP---RDENPKKIRLAIKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVI 451 >gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + S+ Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSDG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L P +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446 >gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] Length = 463 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 153/445 (34%), Positives = 226/445 (50%), Gaps = 25/445 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R IA + F A++G ++DGHD++ A + GA VV+ + S+ +P V Sbjct: 30 GVSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDK----ADPSMGLPQIRV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D + AL +LA+A R S A +AITGS GKTT +EM+ LS + T A G+ NNHIG Sbjct: 86 SDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVGNTLATEGNLNNHIG 145 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + G ELG S LGEI ++VRP + ++T AHL F G + + Sbjct: 146 VPLTLFRLSPEHQLGAIELGASGLGEIAHTVNIVRPEVVILTNAGQAHLEGFGGYDNVVR 205 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI +G +TG + LN DD F+L + ++ + + S S+ AD+ + Sbjct: 206 AKGEIIDGAPETGLVVLNSDDPAFDLWRQRAGQRRVAGV-SGRASEGADYVPNDIHSDGD 264 Query: 269 QSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGR 326 Q G S +V G H N L+ + L AD + AIKA L+ P +G Sbjct: 265 VRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAARELGAD-NEAIKAGLAALKPVKG- 322 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R + + T+ID+SYNANPASMKAA+ VL+ R+AVLG M E+G+ S Sbjct: 323 --RLQMMVLTPKLTVIDDSYNANPASMKAALDVLAARPAS----RVAVLGAMAELGQDSL 376 Query: 387 SFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H ++ E I + G +V DA + + + + LF Sbjct: 377 ALHREIGEFARARGIERLIAVGPGCEGYVEGFGDAA--EVCASHDDAVRRLF----EGPA 430 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 + V+VK S S R++ + E+ Sbjct: 431 ESQTVLVKGSRSSAMDRVVEGIQEK 455 >gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 456 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 151/453 (33%), Positives = 224/453 (49%), Gaps = 36/453 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+S DSR +A + F + G ++GH F A Q+G V+ N PV Sbjct: 26 LIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRSEPNP--PEGKPV 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL KLA A R + ++ +TGS GKTTTK+M+ L + K + G+YNN Sbjct: 84 ILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTEGNYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ MP D + I E+GMS GEI FLT L RP IAVIT I +HL E Sbjct: 144 HIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK EI GL K GT+ D+ E L + +FG+ D+QL Sbjct: 204 IAEAKLEIVNGLSKEGTLIYVGDEPLLTERLNQPPY-----DTKTFGEDPAFDYQLEDMT 258 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG---IVSILTADVDTAIKA 316 Q E + V+ + +G +G H +N L + ++++ A + + Sbjct: 259 QTEEGTAFRVR-------GIENGFFIPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTK 311 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L V G R +I+++YNA+P SMKAAI ++ Q+ G G++I VLG Sbjct: 312 LKV------TGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK--GYGKKILVLG 363 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDAL---PRSIHVHYS-ETMD 431 DM E+GE ++FH ++ + ++ +I ++ G K AL P +H++ E D Sbjct: 364 DMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPEHRVLHFNPEEKD 423 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ GD+++VK+S +I L Sbjct: 424 SLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 456 >gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 446 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 224/442 (50%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++GP++D +DFI A ++GA VVN + ++P+ V Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVN-----RVVKTTLPLICVS 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + I +TGS GKTTT+ +L A S+NN+IGV Sbjct: 80 DTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + + ELG +H GEI +LT L +P +A+IT P HL F +E +A A Sbjct: 140 PLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EIFEGL GT +N DD F E + +H+ + I SFG ++ AD + SE Sbjct: 200 KGEIFEGLSSDGTAVINNDDHFAEFWRRLAHS---RRIISFGINQPADVMAKNITLNSEG 256 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-- 326 + ++ L +E+ IG H N L D L +GR Sbjct: 257 RPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVSVKGRLV 316 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K YR A+ +ID+SYNANP S+ AAI+VL++ H + VLGDM E+G+ + Sbjct: 317 EQKGYRGAI------IIDDSYNANPLSVSAAIAVLAKRPGHS----VLVLGDMLELGQGA 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + FH ++ + + ++ G +A ++ H+ + + L +++ L Sbjct: 367 EQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAFGKNAR-HF-DNQEKLLTALKNDLNANA 424 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 VV+VK S S + + LLEE Sbjct: 425 VVLVKGSLSMRMGNIAHALLEE 446 >gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 231/468 (49%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ NF IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H ++A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 1313] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 240/464 (51%), Gaps = 22/464 (4%) Query: 8 HDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G I G V F N IS DSR+I + F + G +DGH++I A++ GA Sbjct: 7 EEVVKAVGGTLISGEVNTVFYN-ISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGAL 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + G + I V D L AL LAV R + K + ITGSVGKT+TKEM+ Sbjct: 66 GSLTQKETEPFPGKVLIKV---SDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMV 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS K G++NN IGVPLT+ + + + E+GMS GEI LT +V+P I Sbjct: 123 AAVLSKGFKVLKNQGNFNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDI 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT I +H+ I AK EIFEGL + G LN DD +LL ++ L +T Sbjct: 183 AIITNIGVSHIEKLGSKNNILKAKMEIFEGLNEKGLAILNGDD---KLLYGLNNLLKFRT 239 Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ +G + D + + E+ S +++++GK V G H N L + + Sbjct: 240 VF-YGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIE 298 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + ++ + F P GK +N +I+++YNA+P SM+AAI VL IS Sbjct: 299 LGIPPEKIVEGIEEFSP----GKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDIS- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----VLALKDALPRS 421 GEGR AVLGDM E+GE S+S H+++ + + I ++ G + V +A + Sbjct: 354 -GEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEYRSNIVRGAVEAGAKE 412 Query: 422 IHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + MD F++ + GDV++VK S ++N+L Sbjct: 413 EKVFEFKDNMDAA-KFLKEFVKSGDVLLVKGSRGMKMEEIVNIL 455 >gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0031] Length = 474 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ Y I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580] gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580] Length = 491 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/453 (33%), Positives = 224/453 (49%), Gaps = 36/453 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+S DSR +A + F + G ++GH F A Q+G V+ N PV Sbjct: 61 LIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRSEPNP--PEGKPV 118 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL KLA A R + ++ +TGS GKTTTK+M+ L + K + G+YNN Sbjct: 119 ILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTEGNYNN 178 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ MP D + I E+GMS GEI FLT L RP IAVIT I +HL E Sbjct: 179 HIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREG 238 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK EI GL K GT+ D+ E L + +FG+ D+QL Sbjct: 239 IAEAKLEIVNGLSKEGTLIYVGDEPLLTERLNQPPY-----DTKTFGEDPAFDYQLEDMT 293 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG---IVSILTADVDTAIKA 316 Q E + V+ + +G +G H +N L + ++++ A + + Sbjct: 294 QTEEGTAFRVR-------GIENGFFIPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTK 346 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L V G R +I+++YNA+P SMKAAI ++ Q+ G G++I VLG Sbjct: 347 LKV------TGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQMK--GYGKKILVLG 398 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDAL---PRSIHVHYS-ETMD 431 DM E+GE ++FH ++ + ++ +I ++ G K AL P +H++ E D Sbjct: 399 DMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPEHRVLHFNPEEKD 458 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ GD+++VK+S +I L Sbjct: 459 SLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 491 >gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] Length = 455 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/452 (33%), Positives = 221/452 (48%), Gaps = 30/452 (6%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 I P + + DSRSI PQ F A+KG +DGHDF AV+ GA ++V ++ Sbjct: 18 IGPDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHEL-----P 72 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L +P V D A+ ++ R + IA+TGS GKT+ KEM+ LS K Sbjct: 73 LDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVLYTA 132 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IGVPLTL R+ +FG+FELG +H GEI + + LV+P +A++ +A AHL F Sbjct: 133 GNFNNEIGVPLTLLRLEEGDEFGVFELGANHRGEIDYTSSLVKPDVALVNNVASAHLEGF 192 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + +A+AK+EIF L GT +N DDSF ++K A +F AD Q Sbjct: 193 GSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMK---EAASEHKQLTFAIEAAADLQG 249 Query: 261 RKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + C + S++ + + V G H N L GI L + + Sbjct: 250 SGLEPDLLGRYCFKMSYLN-----QEVSVTLPLSGRHQVSNALAAAGICLTLGLPLSEIV 304 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 LS+ P +GR G +ID+SYNANPAS+ AAI L +I +G R V Sbjct: 305 SGLSLLEPVKGR----MLPTQLGRVRVIDDSYNANPASVSAAIDWLQEI----DGYRCLV 356 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGD+ E+G+ + H +L E+ + I ++ G A H + ++ L Sbjct: 357 LGDLGELGDNASLLHTELGELAKIRGIEALFSLGELSANASTAFGGVHHQELEQVVNNLV 416 Query: 435 LFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465 I + GDV V+VK S S R++ L+ Sbjct: 417 NHINQ--LQGDVTVLVKGSRSAKMERVVEALI 446 >gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] Length = 444 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/443 (32%), Positives = 226/443 (51%), Gaps = 26/443 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GIS+DSRSI P E F A++G YDGH ++ A Q GA VV + +P+ V Sbjct: 23 GISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHGAAAAVVE-----EVIETDLPLVLV 77 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D AL +LA R + II +TGS GKTTT+EM+ L+ + A ++NN IG Sbjct: 78 EDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTREMIRSILAEMGPVLANFKNFNNAIG 137 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PLTL + + + + E+G +H GEI +LTH+ +P IA+IT I PAHL F I +A Sbjct: 138 LPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSILRVAE 197 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QC 266 AKAEIF GL + G LN D+ ++L+ S +FG ++N DF R+ + + Sbjct: 198 AKAEIFSGLAQKGVAILNAADNHRDILEKASAQY---RRVNFGLTQNCDFYARQIQLDKT 254 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +++ V G+ + + + G H N L + + + L P GR Sbjct: 255 GRPTFLLVS-SGEEIIIRLNLSGQHHVMNALAAAAVARQVGVEFSVIQSGLEKMQPLSGR 313 Query: 327 GKRYRCALNQGF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +N+ TLID+SYNANP+S+ AA+ +L+ H +G RI VLGDM E+G+ Sbjct: 314 ------VINRTTKTGATLIDDSYNANPSSVAAALKLLA----HYKGLRILVLGDMSELGK 363 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + ++H + E+ I V+ G L+ + A H + L L ++ + Sbjct: 364 SAGAYHRQMGELAKALTIDKVYTCGD--LSEETAKAFGAHGKHYSNHQKLILALKPDVQK 421 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 +++K S + ++ L++ Sbjct: 422 NVTILIKGSRNAQMEKVAAALMD 444 >gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 233/451 (51%), Gaps = 17/451 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+ +AI+G+ I P + G+S++SR + FFA+KG +DGHDF+ A++ GA Sbjct: 7 DIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALAA 66 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV+ + G + V DV AL LA R R K ++ +TGSVGKTTTK++ Sbjct: 67 VVSRPVSLPQGLGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLTAT 126 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L + +T G+YNN IGVPLTL R+ + + E+ M +LGEI L + P + Sbjct: 127 CLEARFQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIALPTCGI 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I + P HL N +E IA AK E+F+ +++ G + +N D+ LL + +K + Sbjct: 187 IVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNP---LLVEAAEKYAVKKV- 242 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 FG N D +L SE++ ++ L G++ E G H+A N++ G+ L Sbjct: 243 RFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLPFPGSHLAYNVIAAAGVAVRLGV 302 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D+ + F P +R G T+ID+ YNANP SMKA + VLS ++ Sbjct: 303 DLADIQSKIRSFSPS---SRRLNIKTGLGGITIIDDCYNANPVSMKAGLEVLSDVAA--- 356 Query: 369 GR-RIAVLGDMCEMGELSQSFHIDL---AEVLSLYNISHVWLSGFHV-LALKDA-LPRSI 422 GR R+AVLGDM E+G H ++ A L + + V H+ A K+A L + Sbjct: 357 GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGELARHIGEAAKEAGLDKER 416 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 +H+S+ + +++S L VV++K+S Sbjct: 417 ILHFSDK-ELAIAYLKSDLPAEAVVLIKASR 446 >gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] Length = 454 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 145/451 (32%), Positives = 230/451 (50%), Gaps = 31/451 (6%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 I+ + + GIS DSR I P E F A++G +DGH+F AV+KGA ++++ + + + + Sbjct: 24 IISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGATALILDKKL-SVLST 82 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IP F V++ L A ++A R + + IIA+TGSVGKTTTKE++ LS+ K + I Sbjct: 83 NEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELIAAVLSTAGKVHKSI 142 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YNN IGVP TL + +G+ E+ M GEI LT + RP I VIT + AH+ Sbjct: 143 GNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTIGVITNVGTAHIGRL 202 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA AK E+ + + LN+D+S ++T +F + K + L Sbjct: 203 GSQEAIAEAKCELLAQMSQDSIAILNHDNSLL-----------LETASTFWQGKTITYGL 251 Query: 261 RKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + ++++GK + G H A N L L + +L D + L+V Sbjct: 252 EGGDLSGQLINPQTLRVEGKEFPLPLP--GRHNALNYLAALAVAKVLDLDWTPLTEGLTV 309 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR +R++ N ++DE+YNA SM AA+ +L + R IAVLG M Sbjct: 310 NLPS-GRSRRHQLPNN---ILILDETYNAGLESMLAALQLLKETPGK---RHIAVLGTMK 362 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLF 434 E+GE S FH + + + I H+ + H+ A D + S + E ++ Sbjct: 363 ELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAGADGVATSCFKTHQEVVN--- 419 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++Q + GD ++ K+SNS R++N L+ Sbjct: 420 -YLQGLIKSGDRILFKASNSVELNRVVNDLI 449 >gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Enterococcus sp. 7L76] Length = 457 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H ++A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 TNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 466 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 17/450 (3%) Query: 4 LWTFH--DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + TF+ DL++ + G + P NG+SIDSR+I E +FA++G YDGHDFI A+ Sbjct: 1 METFYLKDLMRVVGGKFVKGNPGFSANGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAI 60 Query: 62 QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVG 118 KGA VV + D + + S S+ + +D L +L + A + R + K+ IA ITGS G Sbjct: 61 NKGAAAVVCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKE+L + +T + G++NN IG+PL++ + D+++ +FE+G S GEI+ L Sbjct: 121 KTTTKEILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLRGEIKIL 180 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + ++ P +IT + +HL F + + K +F+ +++TG I +N DD F L+ A Sbjct: 181 SDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEF--LMTAP 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + I +F AD + K S + E+ +G S+++ G N L Sbjct: 239 QYVS--RKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +D + F P + R + + LI+++YNANP+SMK AI Sbjct: 297 AVACAIGFGFSLDEIKCGIENFMPPKMRMETLVTGTD---VVLINDAYNANPSSMKKAIQ 353 Query: 359 VLSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + Q G++I VLGDM E+G+ S +H +L + ++ +++S V L G K+A Sbjct: 354 AVLQ---SYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGEMSFYTKEA 410 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + +V +S D L ++ + D V Sbjct: 411 L-NTKNVFHSRNSDSLLTQLKQIPAEDDCV 439 >gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2141] gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0645] Length = 474 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0012] Length = 474 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] Length = 454 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 148/470 (31%), Positives = 232/470 (49%), Gaps = 27/470 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L ++L+ + + + I + V GI+ DSR I+ E F A++G ++DG++F AV+K Sbjct: 7 LKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAVEK 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V+ + V I S +IP F V D L A K+A R + +IA+TGSVGKTTTK Sbjct: 67 GAIAIIVDRE-VPVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTTTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ LS K + +YNN IGVP TL + D+ + E+ M GEI LT + R Sbjct: 126 ELIAAVLSQRGKVHKTRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEIAR 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT + AH+ E IA+AK E+ E + LN+D+ Sbjct: 186 PTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSPDTIAILNHDNPLL----------- 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTL 300 I+T + + + + L + + Q +E ++ + G H A N L L Sbjct: 235 IETAHKVWQGETLTYGLEGGDLVGQL----IDAQTLRVEGINFPLPIPGRHNALNYLAAL 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D + L+V P GR +R++ + L+DE+YNA SM AA+ +L Sbjct: 291 AVAKVLNLDWTPLTEGLTVNLPS-GRSRRHQLPND---VLLLDETYNAGLESMIAALELL 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419 Q R IAVLG M E+G+ S FH + E + NI H+ + A + A+ Sbjct: 347 KQTPGQ---RHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLTDDPQAQEIAVGA 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + +T L +Q + GD ++ K+SNS G R++ LL + P Sbjct: 404 DGVTTQCWQTHQALVQQLQEMIKPGDRILFKASNSVGLNRVVESLLNDQP 453 >gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1346] Length = 474 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 230/468 (49%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I + F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4000] gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0017] gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0027] gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4244] gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0312] gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1302] gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1341] gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309B] gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309A] gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1467] Length = 474 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] Length = 474 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2137] Length = 474 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0043] gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF] Length = 474 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] Length = 457 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 457 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYTP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 457 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAKLTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] Length = 474 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Filifactor alocis ATCC 35896] Length = 452 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 145/439 (33%), Positives = 222/439 (50%), Gaps = 19/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + + F AIKG H+DG+ F+ A+ GA V+ +SI S V V Sbjct: 30 ITTDSRKVKQGDLFIAIKGEHFDGNHFVDMALDNGAVAVL------SSISHKSPRVITVP 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + AL KLA R +I+ITGS GKTTTK+M+ AL+S Y G++NN IG+ Sbjct: 84 DTVKALGKLASGYRDMLDIPVISITGSSGKTTTKDMIFYALNSQCNAYRTEGNFNNEIGM 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ + D I E+GMS LGEI +L + +P+I VIT I AHL E+I A Sbjct: 144 PLTILNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQEKIFEA 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI + + + +N +D F L + IKT FG S + D+ + + + Sbjct: 204 KMEITSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKT---FGFSNSCDYFCKNYDYREDS 260 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + + G + +G H N L LG+ S+L D+ A K+L F P + R + Sbjct: 261 TDICAMIDGLEVNYTIPSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPSKLRMQI 320 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + T+I++SYNANP S+K+ +S+L++ RRIA+LGDM E+G S +H Sbjct: 321 EK----KDGITIINDSYNANPDSVKSVLSILAE---KNNVRRIAILGDMLELGRDSDKYH 373 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDV 446 + E + + + F + AL + + T + I+ + GDV Sbjct: 374 RQIGECAAHSCDILIGIGMFSDYMREGALEHGMDEGFCYSFRTQEESVTTIKDIMRVGDV 433 Query: 447 VVVKSSNSCGFYRLINLLL 465 V++K S +LI+L+ Sbjct: 434 VLLKGSRGMAMEKLIDLIF 452 >gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 457 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0630] Length = 474 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + F + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] Length = 455 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/438 (33%), Positives = 218/438 (49%), Gaps = 20/438 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I F A+KG +DGHDF AV+ GA ++V+ ++ L+I V Sbjct: 27 VSSDSRVIPEHTLFVALKGEKFDGHDFANMAVENGATALLVDHEL-----PLNIAQLIVK 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D A+ L R + +A+TGS GKT+ KEM+ LS K G++NN IGV Sbjct: 82 DTQKAMGDLGAYLRELIQPKSVALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNNEIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D +FG+FELG +H GEI + + LV+P +A++ +A AHL F + +A A Sbjct: 142 PLTLLRLEADDEFGVFELGANHQGEIDYTSSLVKPDVALVNNVASAHLEGFGSLAGVACA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+EIF L TGT +N DD F ++ + S + T +FG AD Q + S Sbjct: 202 KSEIFNHLAATGTAVINADDQFASVMLSASMSF---TQLTFGVESEADIQASDLEADSVG 258 Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++ +S+ + G H N L I +D LS+ P +GR Sbjct: 259 CYRFKLSYMQESVLIALPLSGRHQVSNALAATAICLSFGLTLDEIKLGLSLLLPVKGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 G +ID+SYNANPAS+ AAI L +I EG R VLGD+ E+G+ + Sbjct: 317 --MLPTQLGRVRVIDDSYNANPASVTAAIDWLQEI----EGHRCLVLGDLGELGDNASLL 370 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447 H +L E++ + ++ G A H+ ++ L I+ + GDV V Sbjct: 371 HTELGELIKQRGLDSLFTLGELSANASRAFGVDGHISLERLVEDLIKNIKQ--LQGDVTV 428 Query: 448 VVKSSNSCGFYRLINLLL 465 +VK S S R++ L+ Sbjct: 429 LVKGSRSAKMERVVEALI 446 >gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.] Length = 493 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 206/409 (50%), Gaps = 14/409 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 WT ++++A G ++ + G+SIDSR+IA E F AIKG ++DGH F V++G Sbjct: 7 WTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAEAVVEQG 66 Query: 65 AGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +V+N + + + + VD+ AL LA R R+ +++AITGS GK Sbjct: 67 IKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAITGSNGK 126 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEM +S T + G+ NN IG+PLTL ++ + + ELGM+H GEI L Sbjct: 127 TSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGMNHPGEIARLA 186 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I +IT I HL IE + +AK E+ +G++ GT LN DD L K+ Sbjct: 187 EICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADDERVMCLARKT 246 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + FG S+NA + + + ++L S+ V + G M N L Sbjct: 247 ----TRNVIYFGLSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMVSNALAA 302 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +L L F P +G R Q T+ID+SYNANP SM+AAI Sbjct: 303 ASVGYLLNLSAQEIKSGLENFAPVKG---RMNITTLQNGVTIIDDSYNANPDSMEAAIKS 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L+ + G+ R V GDM E+G S++ H + E+ + I ++ +G Sbjct: 360 LAGL--KGKNRGALVAGDMLELGIYSETLHKKIGELCAECGIERLYATG 406 >gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] Length = 495 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 234/465 (50%), Gaps = 22/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A G + + I I+S+ + F I G DGH FI A+Q A Sbjct: 45 TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESALQVAA 104 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D V I V DD + AL + R R ++A+TGSVGKTTT+EM Sbjct: 105 ATLTSEHDNVVVSDKAYIRV---DDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 161 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T A+S+ K + G+YN+ G P+T++RM + D + ELG+ GE+ LT + +P Sbjct: 162 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTDIAQPD 221 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V+TTI AH+ +E K I +G+ K GT+++N DD +K + Sbjct: 222 ICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEIPC---- 277 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304 +Y++G + DF+ + S ++ + G + V G+ G H +N L+ + + Sbjct: 278 KVYTYGCGEGMDFRATNIRMEDGYSIYDM-VHGDDVVTVKVGVMGLHNVRNSLVAMAVSH 336 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + KA F RG R + G +T+ID++YNA+P SMKA+ VL + Sbjct: 337 QLGVPYEKSSKAFENF-----RGLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMK 391 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 EGR+ VLGDM E+G+ S +H ++ E L I V + G H +K+AL Sbjct: 392 C--EGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEHAQKIKEALDEC-DT 448 Query: 425 HYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y++T+ + + +++ + + D+V++K+SN ++N+L Sbjct: 449 KYAKTVSFTDTEEIAIYLMALMKPEDIVLLKASNGMNLSEVVNIL 493 >gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1342] Length = 474 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ +LA + + +IA+TGS GKTTTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVINEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYVP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Coprococcus sp. ART55/1] Length = 455 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 234/465 (50%), Gaps = 22/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A G + + I I+S+ + F I G DGH FI A+Q A Sbjct: 5 TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESALQTAA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D V I V DD + AL + R R ++A+TGSVGKTTT+EM Sbjct: 65 ATLTSEHDNVVVSDKAYIRV---DDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T A+S+ K + G+YN+ G P+T++RM + D + ELG+ GE+ LT + +P Sbjct: 122 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTDIAQPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VITTI AH+ +E K I +G+ + GT+++N DD +K + Sbjct: 182 ICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEIPC---- 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304 +Y++G + DF+ + S ++ + G + V G+ G H +N L+ + + Sbjct: 238 KVYTYGCGEGMDFRATNIRMEDGYSVYDM-VHGDDVVTVKVGVMGLHNVRNSLVAMAVSH 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + KA F RG R + G +T+ID++YNA+P SMKA+ VL + Sbjct: 297 QLGVPYEKSSKAFENF-----RGLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMK 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 EG++ VLGDM E+GE S +H ++ E L I V + G H +K+AL + Sbjct: 352 C--EGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEHAQKIKEALD-ACDT 408 Query: 425 HYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y++T+ + + +++ + + D+V++K SN ++N+L Sbjct: 409 KYAKTVSFTDTEEIAIYLMALMKPEDIVLLKGSNGMKLSEVVNIL 453 >gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 457 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + F + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] Length = 459 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 242/471 (51%), Gaps = 25/471 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L+A G I + V+ IS D+R+I E F A+KG +DGHDF+ A+ KG Sbjct: 6 TVEDILEATNGVLIKGDIREKVDSISTDTRNINEDEVFIALKGEKFDGHDFVKDAILKGV 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++++ + +A G+ I V V D L AL +A R + K +I +TGS GKTTTK + Sbjct: 66 KGIIISRE-IAVEGN--IFVIRVQDTLKALQDIANYYRRKLKTKVIGVTGSSGKTTTKNL 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + KTY ++NN IGVPL++ DVDF + E+ M + GEI L+ + P Sbjct: 123 IGKLLSIVGKTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEISLLSKIAEPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSHA 241 I VIT I AH+ E I AKAEIFE +++ G LN DD F +E LK K Sbjct: 183 IGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRIYEKLKIKK-- 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTL 300 Y+FG + +D + ++ E +++ GK +++ ++ +N+L++L Sbjct: 241 ------YTFGFDERSDLRGEIVEKNEENYLLKINFPDGKDIKLSLPIYPLNIYRNLLLSL 294 Query: 301 GIVSILTADVDTAIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++ +++ + +++ F PK+ R + +ID++YNANP SM+ AI Sbjct: 295 LVLWVISPESVYSLEKDFYFDLPKQ----RLNLKRKENGLVIIDDTYNANPDSMRTAIEY 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GR+I +LGDM E+G+ S H ++ E + NI G + D Sbjct: 351 LDLLKSS--GRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYGPEMRKALDTYQ 408 Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +++S+ + + +++SL GD ++VK S + + L +E Sbjct: 409 NLDKKRIYWSKDPEEIKSILKNSLCAGDTILVKGSRAMYMENFVKFLEDEL 459 >gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis 62] Length = 457 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 4 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V L PV V D L A+ KLA + + +IA+TGS GKTTTK+ Sbjct: 63 CQAAFWGQDLVDVPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 121 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 181 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 237 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 295 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 352 KV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 410 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] Length = 474 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 228/468 (48%), Gaps = 20/468 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 21 TFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 D+V + L PV V D L A+ KLA + + +IA+TGS GK TTK+ Sbjct: 80 CQAAFWGQDLVDAPQQL--PVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKD 137 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L +P Sbjct: 138 LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 198 EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV----T 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 254 QQVITFGFSQESQLQGIVTNEAKEQT--SFKISDTQMTFTIPVPGTYNVTNALIAIGIGR 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K L+ + R + + A ++ + YNANP +M + S++S Sbjct: 312 YFQLTDSEIQKGLATAELTKNRTEWLKAA---NGAEILSDVYNANPTAMGLVLDSFSKMS 368 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L P Sbjct: 369 --KVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAP 426 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 427 ANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] Length = 501 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 232/465 (49%), Gaps = 22/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D++ A G + + G+ IDSR + F + G DGH FI A+++ + Sbjct: 51 TVKDIVNATGGFLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEPAMERAS 110 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D V P VDD + AL + R R I +TGSVGKTTT+EM Sbjct: 111 ATLTSEHDNVVISEK---PFIRVDDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREM 167 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + A+ + + + G+ N+ IGVP+TL+RM D + E+G+S G++ L+ +VRP Sbjct: 168 IAAAVGTGRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILSDIVRPS 227 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V+T I AH+ E I K I +++ G + LN DD LL+ + + Sbjct: 228 ICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDP---LLREIKDDMSCQ 284 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T+ +FG + DFQ QC EQ + G+++ VV +G H +N L + + Sbjct: 285 TL-TFGIDEVCDFQGSDV-QCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIAVAY 342 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + TA KA F G+R R + +T++D++YNA+P SMKA+I VL + Sbjct: 343 QLGIPMATAAKAFEHFE-----GQRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDLD 397 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 +G++ AVL DM E+G+ S S+H + E L I V + G L +K AL Sbjct: 398 C--KGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKALDIKKALDEC-DT 454 Query: 425 HYSET---MDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y++T MD + L++ + + D+V++K SNS ++ +L Sbjct: 455 KYAKTFSFMDNEEVALYLMAIMKPEDIVLLKGSNSMKLNEIVKIL 499 >gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 466 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 225/451 (49%), Gaps = 31/451 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ + DSR I P F +KG DGH +I A++ GA + + D + + P+ Sbjct: 27 IDSVEFDSRLITPGALFVPLKG-ATDGHSYIDKAIENGAVAALWSND--PNEAPVGFPII 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A+ A A K ++ ITGS GKTTTK+M ALS+ K + G+YNN Sbjct: 84 QVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTALKVHKTNGNYNND 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GMS GEI FL+ L P + VIT I H+ E I Sbjct: 144 IGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVVITMIGENHIEFLGSRENI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYD-----DSFFELLKAKSHALGIK---TIYSFGKSKNADF 258 A AK EI +GL++ GT D D LK + +G+ I++F + F Sbjct: 204 AKAKLEILDGLKEEGTFIYPGDEPLIVDQMPTDLKQSTLTIGLNDDHDIFAFDVMMD-QF 262 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q + S + ME+ L G GY++ QN L LG+ ++ L+ Sbjct: 263 QSTFYTNLSPELKMEIPLSG----------GYNV-QNALYALGVAYSFGLSMEQVRPNLA 311 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F RG R L+ +++++YNA+P++MKA I S I+ G ++I VLGDM Sbjct: 312 EFSITPDRGSWERGILDT---QILNDTYNASPSAMKAVIRNFSAIASKGMSQKILVLGDM 368 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH---VHYSET-MDGL 433 E+G S H ++A V+ L HV+L G + L DAL + +H + Y E+ + L Sbjct: 369 LELGAFSDELHREIATVIGLNTFKHVFLYGPRIQPLVDALIEKGMHPDLITYIESDKEAL 428 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +++ L D V+VK+SN G L+ L Sbjct: 429 IEQVKAILQPEDKVLVKASNGMGLIELVEAL 459 >gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 19/446 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR I P F A+KG +DGHDF A++ GA ++V ++ + IP Sbjct: 24 VQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVEREL-----AFDIPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 79 IVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + +G+FELG +H GEI + + LVRPH+A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPHVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNA-DFQLRKWK 264 A AK+EI+ L++ GT +N DD+F ++++ K+ H + G +K D K Sbjct: 199 AQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYKQLSFSQQEGAAKRQIDVIATGHK 258 Query: 265 QCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ + + G+S EVV G H N L + L ++ + LS P Sbjct: 259 ANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPV 318 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E+G+ Sbjct: 319 KGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H +L ++ I ++ +G A H + ++ L I + Sbjct: 371 NAPLLHAELGQLARQQGIDALFCTGTLTQHTSHAFGAEHHDSVATLVEKLIKHINQ--LP 428 Query: 444 GDV-VVVKSSNSCGFYRLINLLLEEF 468 G V V+VK S S R+++ L F Sbjct: 429 GQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 18/449 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L++A+ G + P G++ DSR + F + G +DGHD+I GA + Sbjct: 8 ELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCFNAGATVC 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + + G +I V DD AL LA R + ++ ITGSVGKT+TK+M++ Sbjct: 68 LTSKQIPTVTGCTAILV---DDTAKALRDLAAWYRRKFDIPVVGITGSVGKTSTKDMVSC 124 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS K G++NN IG+PLT+ + + + E+GMS GEI LT + RPHIA+ Sbjct: 125 VLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTAIARPHIAI 184 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I +H+ E I AK EI E L+K G + LN DD LK K L +T++ Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGK---LSFRTVF 241 Query: 249 SFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +G + +D+ ++ EQ + E+ + V G H N L + + Sbjct: 242 -YGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNVEIPVPGIHNVYNALAAIAAGIEMK 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ I + F P G + +N +I+++YNA+P SM+AAI+VL +IS Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLQEIS--S 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIH 423 E R IAVLGDM EMG++S+ H + + + I+++ G + A+ Sbjct: 355 ESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQAVADYGNSQTE 414 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 +H+ E +I ++ GD +++K S Sbjct: 415 IHHFENNKEALKYILEIVMPGDYILIKGS 443 >gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine bacterium HP15] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 149/450 (33%), Positives = 223/450 (49%), Gaps = 36/450 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFG 87 G+S D+R++ P + F A++G ++DGH F+ A+ KGA GLVV D +L++P Sbjct: 30 GVSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDTPDT-----NLALPQLV 84 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ L AL +LA A R S A I+AITGS GKTT KEM LS + KT + G+ NNHI Sbjct: 85 VNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMGKTLSTKGNLNNHI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + +G+ ELG S LGEI L +P +A++T AHL F E I Sbjct: 145 GVPLTLFGLSPEHQYGVIELGASGLGEIAHTVALAKPRVAILTNAGEAHLEGFGSYENIV 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-------ADFQL 260 AK EI +G+ G + LN DD F ++++ A + + G + D Sbjct: 205 LAKGEIIDGVASDGLMVLNGDDPAFAQWRSRAGARRVAGVSRLGAEADYHAVIDGQDAGT 264 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R ++ W+ V G H NML+ + L A + L+ Sbjct: 265 RTFQVSGPDGWL--------CRVTLGLEGDHNITNMLLAIAATRELGASDQAIVAGLASV 316 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + TLID+SYNANP+SMKAA+ VL+ + G++IAVLG M E Sbjct: 317 APVKGRLQVLELSPE---MTLIDDSYNANPSSMKAALGVLAGRA----GQKIAVLGAMAE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G + + H ++ + I + G D S + S ++S+ Sbjct: 370 LGAKANALHREVGVCAREHGIDRLITVGPGCEGYADGFGESTELGLSHEQ-----AVESA 424 Query: 441 LVDGD---VVVVKSSNSCGFYRLINLLLEE 467 + D + V+VK S S R++ + E+ Sbjct: 425 IGDKNTPLTVLVKGSRSSAMERVVEGIKEK 454 >gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 146/470 (31%), Positives = 228/470 (48%), Gaps = 27/470 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L Q + H +G + +S DSR I P F A+KG +DGHDF A++ GA Sbjct: 5 SLEALSQHLSAHRVG--DDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V ++ + +P V D A+ + R + +A+TGS GKT+ KEM Sbjct: 63 VALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + LVRPH Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPH 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ + AHL F +A AK+EI+ L+ GT +N DD+F ++++ K+ Sbjct: 178 VALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAKQY--- 234 Query: 246 TIYSFGKSKNA-----DFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299 SF + + A D K SE + + G+S EV G H N L Sbjct: 235 KQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + + LS P +GR + + G LID+SYNANP S+ AAI+ Sbjct: 295 ASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRIRLIDDSYNANPVSVGAAIAW 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +IS + R VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 351 LKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFG 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 H + ++ L I + G V V+VK S S R+++ L F Sbjct: 407 AEHHDSVATLVEKLIKHINQ--LPGQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 221/449 (49%), Gaps = 25/449 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I P F A+KG +DGHDF A++ GA ++V ++ + +P Sbjct: 24 IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVEREL-----AFDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 79 IVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + +G+FELG +H GEI + + LVRPH+A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EI+ L+ GT +N DD+F ++++ K+ SF + + A D Sbjct: 199 AQAKSEIYNHLQSGGTAIINADDAFADVMRVKAKQY---KQLSFSQQEGAAKRQIDVIAT 255 Query: 262 KWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K SE + + G+S EV G H N L + L + + LS Sbjct: 256 GHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ + H +L ++ I ++ +G A H + ++ L I Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFGAEHHDSVATLVEKLIKHINQ- 426 Query: 441 LVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 + G V V+VK S S R+++ L F Sbjct: 427 -LPGQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii] gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii] Length = 515 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 230/474 (48%), Gaps = 29/474 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + QA+ G + QG I D+R I + F A+ G ++DG+ F+ A+ Sbjct: 49 IWDCQQIAQAVGGI---LAKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105 Query: 64 G-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G AG + + +G + V D L AL+KLAV AR R + ++ ITGS GKTTT Sbjct: 106 GCAGAIGRSMPTDWPVGFVE-----VSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTT 160 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K M+ +AL S+ + GS NNHIGVPLTL +P + E+GM+HLGEI L+ + Sbjct: 161 KAMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRIC 220 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P + V+ + PAH+ N +E++A AK E+F + LN DD + A+ Sbjct: 221 KPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM 280 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----GYHMAQNMLM 298 I FG+S+ +D +L + S ++ LQ + + G H+A N Sbjct: 281 ----IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACA 336 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + L + A +++S F P G R R LI+++YNANP SM A+ Sbjct: 337 AACVATSLGVPLKAASESISKFSPV---GMRSRLEAISSNIQLINDAYNANPMSMTVALE 393 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ + +GR++ LGDM E+G+ ++ H+ + + HV + G A DAL Sbjct: 394 ILASV--ECKGRKVVALGDMLELGDFARGAHM---KAIKCCQEVHVDVIGTAGPAFSDAL 448 Query: 419 P----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V E L + + + GDVV+VK S +++ + +F Sbjct: 449 NGLELEKCEVVKCENSAALAEELTARVTPGDVVLVKGSRGMRMELVVDAIKRKF 502 >gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 146/470 (31%), Positives = 227/470 (48%), Gaps = 27/470 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L Q + H +G + +S DSR I P F A+KG +DGHDF A++ GA Sbjct: 5 SLEALSQHLSAHRVG--DDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V + + +P V D A+ + R + +A+TGS GKT+ KEM Sbjct: 63 VALLVERQL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + LVRPH Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPH 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ + AHL F +A AK+EI+ L+ GT +N DD+F ++++ K+ Sbjct: 178 VALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAKQY--- 234 Query: 246 TIYSFGKSKNA-----DFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299 SF + + A D K SE + + G+S EV G H N L Sbjct: 235 KQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + + LS P +GR + + G LID+SYNANP S+ AAI+ Sbjct: 295 ASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAW 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +IS + R VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 351 LKEISEN----RCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFG 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 H + ++ L I + G V V+VK S S R+++ L F Sbjct: 407 AEHHDSVATLVEKLIKHINQ--LPGQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] Length = 461 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 224/445 (50%), Gaps = 14/445 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + ++ D+R + P F +KG DGHD+I A+Q GA V+ D+ G I Sbjct: 27 IESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAGATAVLWGKKDLTPPEG---ICA 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L A KLA + ++ ITGS GKTTTK+M AL + + Y G++NN Sbjct: 83 IWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTTKDMTAAALGARYRVYKTQGNFNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+P T+ MP + + E+GMS+ EI FL+ L RP + IT I +H+ E Sbjct: 143 DIGLPQTILDMPESTEALVLEMGMSNFHEIEFLSKLARPEVVAITLIGESHMEQLGSKEG 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI GL++ GT + A++ I + G+ + + + + Sbjct: 203 IAKAKLEILSGLQEKGTFIYPAHEDLITAGIAQAEKPATFKIVTVGEG-SKELSTKNIEL 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ + E+ +++ V +G + N L+ + I L + + AL+ F + Sbjct: 262 YSDHTAFELVTPTETVAVTLPVLGAYNVSNALLAIEIARTLEVPLSDIVSALANFELTKN 321 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + Q +++++YNA+P +MK+ I S +S GRR+ VLGD+ E+GE S Sbjct: 322 RTQWVK---GQNGVAILNDAYNASPIAMKSVIQ--SFVSVEATGRRVLVLGDIRELGEHS 376 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLV 442 + H ++EV+S ++ V+L G + AL DAL + H+ + L +++ L Sbjct: 377 KELHASISEVISPSEVALVYLYGEEMEALYDALKDQFEIAALHHYMDKEALIADLKAELK 436 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 +GD V++KSSN G +++ L E Sbjct: 437 EGDQVLIKSSNGTGLLAVVDALKAE 461 >gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii] gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii] Length = 515 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 230/474 (48%), Gaps = 29/474 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + QA+ G + QG I D+R I + F A+ G ++DG+ F+ A+ Sbjct: 49 IWDCQQIAQAVGGI---LAKQGSPGSICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105 Query: 64 G-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G AG + + +G + V D L AL+KLAV AR R + ++ ITGS GKTTT Sbjct: 106 GCAGAIGRSMPRDWPVGFVE-----VSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTT 160 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K M+ +AL S+ + GS NNHIGVPLTL +P + E+GM+HLGEI L+ + Sbjct: 161 KAMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRIC 220 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P + V+ + PAH+ N +E++A AK E+F + LN DD + A+ Sbjct: 221 KPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPDAM 280 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLM 298 I FG+S+ +D +L + S ++ LQ + S G H+A N Sbjct: 281 ----IRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACA 336 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + L + A +++S F P G R R LI+++YNANP SM A+ Sbjct: 337 AACVATSLGVPLKAASESISKFSPV---GMRSRLEAICSDIQLINDAYNANPMSMTVALE 393 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ + +GR++ LGDM E+G+ ++ H+ + + HV + G A DAL Sbjct: 394 ILASV--ECKGRKVVALGDMLELGDFTRGAHM---KAIKCCQELHVDVIGTAGPAFSDAL 448 Query: 419 P----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V E L + + + GDVV+VK S +++ + +F Sbjct: 449 NGLELEKCEVVKCENSAALAEELTARITPGDVVLVKGSRGMRMELVVDAIKRKF 502 >gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] Length = 457 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 192/370 (51%), Gaps = 24/370 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R++ E F A+KGP++DGH FI A QKGA V+V+ + + I F V+ Sbjct: 24 INTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVDHKV-----DVDIAQFIVN 78 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A + IAITGSVGKTT KEM LS A G++NN IGV Sbjct: 79 DTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 138 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ F + ELG +HLGEI + T + +P +AV+ +APAHL F + +A A Sbjct: 139 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSLMGVAKA 198 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265 K EIF+GL++ G +N D F + K IK F S+ D W + Sbjct: 199 KGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIK---RFSTSEKLDI----WAEDISL 251 Query: 266 -CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ + + K + V G H N L+ + S L +D AL+ + Sbjct: 252 DANARASFTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALATMGDVK 311 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + T++D++YNAN S+KAAI +LS + +G RI LGDM E+GE Sbjct: 312 GRVNLIEVS---DMLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGED 364 Query: 385 SQSFHIDLAE 394 ++ +H ++ E Sbjct: 365 ARKYHQEVGE 374 >gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] Length = 433 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 193/390 (49%), Gaps = 29/390 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G SID+R+I P + A++G +DGHDF+ A QKGA ++V D+V + P V Sbjct: 26 GCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQKGASAIIVERDVVCDL-----PTLRV 80 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI-------ALSSIKKTYACIG 141 D AL LA R R ++AITGS GKTTTKEML A S+ A G Sbjct: 81 ADTRKALGDLARFWRQRFDLPVVAITGSNGKTTTKEMLKTIFTQKISAESNEINVLATQG 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IGVPLTL + + + I E+G +H GEI +LT + +P +A IT APAHL F Sbjct: 141 NLNNDIGVPLTLFNLQANHRYAIIEMGANHAGEIAYLTQMAKPSVATITQCAPAHLEGFK 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQ 259 +E +A AK EIF L + G +N DD++ L A SH I +F AD Sbjct: 201 SVEGVALAKGEIFSHLTEDGIAIINNDDAYTTLWHELAASH-----QINTFALENTADVT 255 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + Q +E S + KS +H + G H N L ++ + L Sbjct: 256 AKDI-QLNEDSCDFILHTQKSDIAIHLPLPGQHNIMNALTASACALACGCSLEIIQQGLQ 314 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P +GR + ++ TLID++YNANP S+ AA+++LS P +LGDM Sbjct: 315 NMQPVKGRLQLHKI----NGITLIDDTYNANPTSLNAALAILSNYPP----PYWLILGDM 366 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+ S FH + + H+W G Sbjct: 367 KELGQKSAEFHQQAGQRAREVGVEHLWAIG 396 >gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] Length = 441 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 142/436 (32%), Positives = 216/436 (49%), Gaps = 27/436 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + + F A+KG +DGH F+ A ++GA VVV ++ G ++ V +D L Sbjct: 27 DSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEGKFALVV---EDSL 83 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL +A+ R K ++ I GS GKTTTKE++ LS++ K +YN+ IGVPL+ Sbjct: 84 KALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVCKTPKNYNSQIGVPLS 143 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 +A P D DF + E+G S G++ LT LV PH+ VIT+I HL F ++++ E Sbjct: 144 VANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSIGEEHLETFGCLDDVILGNGE 203 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I EG+ +D L +H ++ FG+ Q K + Sbjct: 204 ILEGMR---------EDHVAVLPSYVAHCYRVERAVLFGEGTPLSAQDLKL------TVE 248 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 V+ K E+ + +N+L +LG++ L D T + L+ F P EG R+R Sbjct: 249 GVRFVVKGKEIFLPVPSLALVENILCSLGVMEALGVDWTTLLDKLTTFRPVEG---RFRT 305 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G T+ID+SYNANP S+K AI LS + EG RIAVLGDM E+GE ++ H D+ Sbjct: 306 LSVMG-ATIIDDSYNANPLSVKKAIESLSLM----EGHRIAVLGDMLELGEKAEELHRDV 360 Query: 393 AEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + I G+ + A +A + Y E + ++ L +G +++VK Sbjct: 361 GRWCAEKRIDECIFYGYWMRYAFHEAKRLGVSTIYLEDKGEVVQHLRKKLREGTIILVKG 420 Query: 452 SNSCGFYRLINLLLEE 467 S +I LL+E Sbjct: 421 SRGMKMEEVITQLLQE 436 >gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 472 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 221/445 (49%), Gaps = 13/445 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ DSR + P + F + G DGHD+I A++ GA + + + A+ I + Sbjct: 27 VTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQAIKNGAVATLWSKEAQAAPAD-QIAIV 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ LA R +I ITGS GKTTTK+M L + K + G+YNN Sbjct: 86 LVDDTLVAMQALANYYRNSLNPKVIGITGSNGKTTTKDMTANVLKAKYKVHKTEGNYNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL +MP D + E+GMS GEI L+ + +P IAVIT I +HL I Sbjct: 146 IGLPYTLLQMPADTQVVVCEMGMSDFGEIEVLSKIAQPDIAVITLIGESHLEFLGSRANI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL++ G ++ LL+ ALG + SFG ADF K+ Sbjct: 206 AKAKLEILKGLKEDGLFIYPANEP---LLQEAGQALGDRA-RSFGLDNTADFYAYDLKED 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +++ + + + + +G + N ++ L + L ++ AI LS F + R Sbjct: 262 KNKTYFHTNIDDQVLCSIPV-MGAYNVGNAMIALTVAQELKVPIEQAIFQLSQFKLTKNR 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + A N ++++++YNA+P S+KA + SQ+ EGRR+ LGD+ E+G S Sbjct: 321 -LEWLTASNGA--SILNDAYNASPTSIKAVLKSFSQVETQAEGRRLVALGDVKELGPESA 377 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLV 442 ++H L++ + I+ V+L G + L AL P+ + L IQ+ L Sbjct: 378 NYHAALSQEIDPKKIAKVYLLGPQMQHLYQALQAKFPKQALYYTENDHKALVATIQADLQ 437 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 D ++VKSS ++ L+ E Sbjct: 438 VQDHLLVKSSLGTDMLYVVGKLIGE 462 >gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] Length = 452 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 217/449 (48%), Gaps = 40/449 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R++ P + F A+ G +DGH+++ A++KGA V+++ M +++P V Sbjct: 28 VSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRM-----EVTVPFLQVA 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +L + RLR + ++AITGS GKTT K M+ L + G+ NNHIG Sbjct: 83 DTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMMATLLRQQNEVLVTRGNLNNHIGA 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D+ + ELG S LGEI + L RP ++++T AHL F +E I Sbjct: 143 PLTLLRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILTNAGNAHLEGFGSVEGIVKT 202 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265 K EI + L G LN D +FE + ++ G + + SFG++ +AD + + Sbjct: 203 KGEIIDALADDGVAVLNADSPYFEEWQKRA---GSRRVISFGETLSADIRATDIQSNANG 259 Query: 266 -CS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 C+ EQS +++ + GK H N L L + L Sbjct: 260 CCAFTLHINDEQSQVQLSVMGK-----------HNVFNALACAAACVALDMPPKLIVSGL 308 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 +F EGR + LN +ID+SYNANPAS++AA+ VL+ S H I VLGD Sbjct: 309 QLFEGVEGR-LLEKQGLNGS--RIIDDSYNANPASVRAAVDVLASRSSH----TIFVLGD 361 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G + H ++ I + G DA + H+ + D L F+ Sbjct: 362 MAELGVETHLAHAEVGAYAREAGIDEFFALGEFSRKAADAF--GDNAHWFASHDNLIRFL 419 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L V+VK S S R++N ++E Sbjct: 420 TKKLNKDVTVLVKGSRSSHMDRVVNDIVE 448 >gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] Length = 456 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 226/451 (50%), Gaps = 20/451 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L A G + + + ISIDSR++ + F + G D H FI A GA V Sbjct: 8 DILSATGGRLLCGSEEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAAAV 67 Query: 69 VVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + D + S + P V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 68 LTSRHDAMDS----ARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMVA 123 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 ALS+ Y G++N+ +GVP+T++ + + + G+ ELGMS GE+ + + + +A Sbjct: 124 CALSARYSVYKTPGNHNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQMA 183 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I H+ + I K I +GL + G +FLN DD F + KAK G +TI Sbjct: 184 VITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKE---GCRTI 240 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y +G +N D++ K + V +G H N +++L + + Sbjct: 241 Y-YGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMVSLAVAAECG 299 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ A K L F R + Y+ G T+ID++YNA+P SMKA + VL I+ Sbjct: 300 IPMEKAAKCLEAFTGFRNRQQIYQT----GGITVIDDTYNASPVSMKAGLEVLGSITKA- 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIH 423 RRIAVL DM E+G+ + S+H ++ E ++ + + + L+G A+K+ P I Sbjct: 355 -KRRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTLGELAGEIARAVKEHAP-CIQ 412 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 V D L +++ L +GD V+ K SNS Sbjct: 413 VKEFMEQDPLVSYLKEELKEGDCVLFKGSNS 443 >gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 233/467 (49%), Gaps = 17/467 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L+A +G I + V+ IS DSR+I + F A+KG +DGH+F+ A+ KGA Sbjct: 6 TVEDILKATKGILIKGNFKDKVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDAILKGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V+ D+ + + V D L AL +A A +I ITGS GKTTTK + Sbjct: 66 KGVIVSRDVNLEDKAF---IIKVQDTLKALQDIANYYLKTLNAKVIGITGSSGKTTTKNL 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L I K Y ++NN IGVPL++ DVDF + E+ M GEI L+ + P Sbjct: 123 VGRLLKLIGKVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSKIAEPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I AH+ E I AKAEIF+ +++ G LN DDSF + + H IK Sbjct: 183 IGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLH---IK 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 Y+FG + +D + + E + + GK + + ++ +N+L L ++ Sbjct: 240 K-YTFGFEEGSDLRGLILDKGKESYTLGLYFPDGKRLTLSLPVYPLNIYRNLLSALLVLW 298 Query: 305 ILTADVDTAIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + +K F PK+ R N+ +ID++YNANP SMK AI L + Sbjct: 299 SISPESIYRVKEDFDFTLPKQ----RLDVKRNKDGLVIIDDTYNANPDSMKTAIEYLELL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 GR++A+LGDM E+G S H ++ E + NI + L G + D + Sbjct: 355 DVP--GRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVLYGQEMKKALDEFEKIDW 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 VH+S+ + + ++ SL D V++K S + + L +E+ Sbjct: 413 SKVHWSDNPEEIKSILRRSLQPKDTVLIKGSRAMRMEDFVKFLEDEY 459 >gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] Length = 455 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 231/463 (49%), Gaps = 26/463 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q + G IG + + + DSRSI + F A+KG +DGHDF A++ GA Sbjct: 5 TLSLLSQRLNGRLIGSDTE--ILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ +L IP V D A+ ++ + + +A+TGS GKT+ KEM Sbjct: 63 SALLVSREL-----ALDIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K G++NN IGVPLTL R+ D ++G+FELG +HLGEI + + LV+P Sbjct: 118 VASILSQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSSLVKPD 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ +A AHL F +E +A AK+EIF L G +N DD F ++++ + Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFADVMRGAASQF--- 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304 T +F AD + + S + S E + + G H N L I Sbjct: 235 TQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAATAICL 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L ++ + L + P +GR + G +ID+SYNANPAS+ AAI L +I Sbjct: 295 SLGLSLEEVLSGLKLVEPVKGRMLPHEL----GRVRIIDDSYNANPASVGAAIDWLQEI- 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 +G R VLGD+ E+G+ + H +L E I ++ G L + + Sbjct: 350 ---DGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLG----ELSENTAAAFGG 402 Query: 425 HYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLL 464 + + + L L + +++ + GDV V+VK S S G R++ L Sbjct: 403 QHQQELAPLVLCLINTINQLQGDVTVLVKGSRSAGMERVVEAL 445 >gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] Length = 457 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 224/458 (48%), Gaps = 25/458 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F + A I ++ ++GI+ DSR I P E F A++G ++DGHDF AV KGA Sbjct: 10 FRKIFSANLNSEIDVIDDFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAI 69 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V+ ++ + IP V D L A ++A R + +IAITGSVGKTTTKE++ Sbjct: 70 ALIVD-HHISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELI 128 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + LS+ + +YNN IGVP TL + D+ + E+GM L EI L+ + RP I Sbjct: 129 SAVLSNYGIVHKTKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTI 188 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT + AH+ E IA AK E+ + T N+D+S ++T Sbjct: 189 GLITNVGTAHIGRLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLL-----------VQT 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + L E ++ Q L+ + M+ G H A N L + + Sbjct: 238 AKKVWKGETISYGLEGGDITGE--LLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKC 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + ++ +SV PK GR +RY+ + G L+DE+YNA SMKAA+ +L +I Sbjct: 296 LKLDCNVLMQGISVNLPK-GRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPG 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIH 423 R +A+LG M E+GE S H ++ E I H V + +A+ D + Sbjct: 352 Q---RHLAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADG-ALGMV 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 T + L + + GD ++ K+SNS G R++ Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLLFKASNSVGLNRVV 445 >gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 218/440 (49%), Gaps = 15/440 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+G+S D+R+I + +KG +DGH F+ A+ KGA V+ + +PV Sbjct: 26 MVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSE--TEGSPPADVPV 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL +LA R + A +I ITGS GKTTTK+++ L++ K G+ NN Sbjct: 84 IVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL R+ DV+ + E+GMS+ GEI L+++ P A+IT I +HL E Sbjct: 144 HIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI GL+K G N D+ L +H + + +FG+ D+ + Sbjct: 204 IAQAKLEILSGLKKNGLFVYNGDEPL--LASRVAHLPLPEHVLTFGQGNKNDY-YPESVH 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 M Q + +G H N L L + + +ALS Sbjct: 261 LQANGMMFTIRQAANRSFFLPILGKHHVYNALAALAVARFFDVSWENVQEALSRLQVTR- 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +T+I+++YNANP SMKAA+ +L +++ G +++AVLGDM E+G+ Sbjct: 320 --MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT--GYKKKMAVLGDMLELGDRE 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSL 441 FH ++ +L + +V+ G H+ LA + P V+ E L + + + Sbjct: 376 VEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPDG-RVNAYEDKRALAKDLLAVV 434 Query: 442 VDGDVVVVKSSNSCGFYRLI 461 GDV+++K+S L+ Sbjct: 435 SPGDVILLKASRGMKLEELL 454 >gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] Length = 947 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 218/435 (50%), Gaps = 14/435 (3%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 I+S+ + + FFAIKG DG+ F+ + ++ A L VVN S I V + Sbjct: 515 INSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQNKLNHSRQIKV---KNT 571 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L L ++ R IIAITGS GKTT KE+L L+ I K SYNN GVPL Sbjct: 572 LKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNKISKVSISPKSYNNKFGVPL 631 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 +L + +FGI E+GM GEI +L+ ++ P + VIT I AH NF I++IA AK+ Sbjct: 632 SLFNINQKDEFGILEVGMDKKGEIDYLSKIIEPDVGVITNINYAHAKNFKNIKQIALAKS 691 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQS 270 EI + + G I LN DDSFF+L + IK I SFG K+ AD +L K ++ Sbjct: 692 EIIDNIRLYGFIVLNADDSFFKLHYNIAKKKNIKVI-SFGIKNHKADIKLINIKPFRKKF 750 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + L K + + N+L L ++SI F GRG Sbjct: 751 RINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLDKNIFYDFKIPGGRGDHS 810 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 N LID+SYN+NP S+K+AI +I+ + + ++GDM E+G S+ H Sbjct: 811 VIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLK-KSNKYMLIGDMLELGSHSRRLHR 869 Query: 391 DLAEVLSLYNISHVWLSG-FHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 +A +++ NI V++ G + KD A I ++ S+ ++ I+ L + D Sbjct: 870 SVAPIINKSNIDKVYVKGKMASIIFKDISKAKKGRILLNKSQIIE----LIRKDLNNNDY 925 Query: 447 VVVKSSNSCGFYRLI 461 +++K+S + GF ++ Sbjct: 926 LMIKASLATGFNDIV 940 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 162/394 (41%), Gaps = 48/394 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +GIS D+++I FFAIKG +DG++FI A+ KG+ ++V V S+ + I Sbjct: 18 YFSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVT-EKKVKSVQN-GILY 75 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---- 141 ++V L + A + +IA+TG+ GK++ L K A IG Sbjct: 76 IHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGTLGV 135 Query: 142 -SYNNHIGV------PLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRP 184 S N ++ + P+ LA++ + E L + L ++F + Sbjct: 136 KSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNS----- 190 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALG 243 + T ++ HL ++ +AK +FE L +K G + + F+ +K + Sbjct: 191 --GIFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLITDQLIPEFKKIKKITINKR 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +K +Y+ KN + Q+ E +++L + + IG +N+LM + Sbjct: 249 LK-LYALNDKKN-NLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAA 306 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + P EGR ++ N L Y P ++K + L + Sbjct: 307 KNSNIGLNKILNKIYKLKPVEGRFEKIGKIKNHSKVIL---DYAHTPDALKTCLLNLREQ 363 Query: 364 SPHGEGRRIAVL---------GDMCEMGELSQSF 388 P ++I VL +MG+++ F Sbjct: 364 FP---AKKIIVLFGCGGNRDQNKRSKMGKIASYF 394 >gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 227/469 (48%), Gaps = 47/469 (10%) Query: 20 GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 G+VP G + ++ DSR + P F A G +DGHDF A+++GA VVVN Sbjct: 12 GLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNH- 70 Query: 74 MVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSK--ATIIAITGSVGKTTTKEM 125 PV GV + L + + A RS+ ++ +TGSVGKTTTK+M Sbjct: 71 ----------PVPGVPEEKAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ALS +T G+ NN +G+P TL R+ ++ + E+GMSH GEI L RP Sbjct: 121 TYAALSGFGETIKTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPD 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +IT I +H+ N E I AK EI GL + + LNYDD F +H ++ Sbjct: 181 VGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VR 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304 ++ +NAD +Q ++ ++ Q VV+ +G H N L + Sbjct: 238 PVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAAT 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D I+ LS F E G+R + ++G T+I++ YNANP SMKAA+++ Sbjct: 298 RLGCDAKRVIRGLSNF---EQTGRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALP 419 RR A+LGDM E+GELS+ H +L + + + + G V+A + Sbjct: 354 CK---RRFALLGDMLELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGV- 409 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++H Y E D L +Q GD ++VK+S+ +++++ EE Sbjct: 410 ETLHADSYREAADALLSRVQP----GDAILVKASHGMALEKVLDIFYEE 454 >gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 471 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/425 (32%), Positives = 211/425 (49%), Gaps = 27/425 (6%) Query: 12 QAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 Q +QG I I + G+S D+R I P + F A+ GP++DGH FI A Q GA Sbjct: 11 QQVQGELIRSEKSIAANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKFIDTAAQGGAVA 70 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+V+ + + + V D AL +L A + +AITGS GKTT KEM+ Sbjct: 71 VIVSRKVDTELAQIL-----VSDTKEALGRLGQAIKREVAPKTVAITGSSGKTTVKEMVA 125 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K A G++NN IGVPLTL R+ D +F + ELG +HLGEI + T LV+P +A Sbjct: 126 AILSRRGKVLATKGNFNNDIGVPLTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVA 185 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 I A AHL F + +A AK+EIF+GL K G N D F+ K L + Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQ-- 243 Query: 248 YSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +F AD+ + C++ ++ V GK + + G H N L++ + Sbjct: 244 -AFSTKDEADYYAQDVVLGLNGCAD--FLMVTPLGK-VSISLPLPGLHNVSNALVSAALA 299 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A++ L GR + + + G ++D++YNAN AS+ AAI +L Sbjct: 300 IEVGANLQDVQAGLQYMAQVSGRLQVKQLS---GQVKVLDDTYNANVASVNAAIDLLGSF 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR++ VLGDM E+GE ++ +H + E I ++ G + D +S + Sbjct: 357 A----GRKVLVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSASDVYQKSGY 412 Query: 424 VHYSE 428 H+S+ Sbjct: 413 -HFSD 416 >gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 218/440 (49%), Gaps = 15/440 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+G+S D+R+I + +KG +DGH F+ A+ KGA V+ + +PV Sbjct: 26 MVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSE--TEGSPPADVPV 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL +LA R + A +I ITGS GKTTTK+++ L++ K G+ NN Sbjct: 84 IVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL R+ DV+ + E+GMS+ GEI L+++ P A+IT I +HL E Sbjct: 144 HIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI GL+K G N D+ L +H + + +FG+ D+ + Sbjct: 204 IAQAKLEILSGLKKNGLFVYNGDEPL--LASRVAHLPLPEHVLTFGQGNKNDY-YPESVH 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 M Q + +G H N L L + + +ALS Sbjct: 261 LQANGMMFTIRQAANRSFFLPILGKHHVYNALAALAVARFFGVSWENVQEALSRLQVTR- 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +T+I+++YNANP SMKAA+ +L +++ G +++AVLGDM E+G+ Sbjct: 320 --MRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT--GYKKKMAVLGDMLELGDRE 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSL 441 FH ++ +L + +V+ G H+ LA + P V+ E L + + + Sbjct: 376 VEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPDG-RVNAYEDKRALAKDLLAVV 434 Query: 442 VDGDVVVVKSSNSCGFYRLI 461 GDV+++K+S L+ Sbjct: 435 SPGDVILLKASRGMKLEELL 454 >gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 224/466 (48%), Gaps = 19/466 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW + + + G G+ SIDSR+I P E FFA+KG DGHD++ A+ + Sbjct: 5 LWRIAEFIHGTGDYRAGAEALGY----SIDSRTIKPGELFFAVKGERLDGHDYVQAALDR 60 Query: 64 GAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA VV+ + A G+ ++ V DD L AL++LA R ++ +TGS GKTTT Sbjct: 61 GAVAAVVSREFPARFNGTRNLLV--ADDPLLALHRLAEMVRSLWHHPVVGVTGSAGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + L+S K G+ NNH G+PL L ++ + + + E+GMSH GEI L L Sbjct: 119 KECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLA 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P+ V+T +AP HL NF I IA AK E+ L + G LN DD F H Sbjct: 179 QPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRGGCAVLNADDEFVSQFGRDFHG- 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T+ FG + ADF+ + + S +++ + K IG H N L + Sbjct: 238 ---TVLMFGVKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +++AI +L P + RG+ A T++++ YN+NP ++ A + L+ Sbjct: 295 VGVHHGIAIESAIASLKTLKPADKRGEVVEIA----GATVVNDCYNSNPKALNAMVDALA 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ RRI + G+M E+G + H D + + V + G ++ A Sbjct: 351 KMPAQ---RRIVIAGEMLELGPEGEHLHRDSGKHMKGIVDHLVGVRGLAQAMVEGAKSAG 407 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + T + ++ +++ GD V++K+S R + E+ Sbjct: 408 VEAEFVATPEEAGDWLAANIRPGDAVLLKASRGVKLERALERWKEK 453 >gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] Length = 483 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 21/460 (4%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 + + GH G F+ +S D+R I + + A++G +DG DF A++ GA V++N Sbjct: 9 KVLHGHIKGPTDARFM-AVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATAVLMN 67 Query: 72 TDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 D + + P + V D AL +LA R + ++AITGS GKTT KEML Sbjct: 68 ADSFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVKEMLAS 127 Query: 129 ALSSIKKT----YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L S + A G++NN IG+PLTL ++ + + E+GM+H GEI +LT + P Sbjct: 128 VLRSAAGSDDAVLATKGNFNNDIGMPLTLLQLNAQHRYAVIEMGMNHPGEIDYLTRIACP 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++A+I + AHL +E +A AK EIF GL+ G+ +N DD F L + + G Sbjct: 188 NVALINNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGSAIINADDEFAPLWRCLA---GA 244 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ FG S ++D + W+ ++V+ V G H A+N L Sbjct: 245 NSLLEFGLSGHSDV-VGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNALAVTAAAI 303 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +++ + LS F GR +R +G LID++YNANPAS+KAAI+VL+ +S Sbjct: 304 ALNLSLESIVAGLSKFSGVAGRLQRKPA--REG-AVLIDDTYNANPASLKAAIAVLAAMS 360 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G+R+ VLGDM E+GE + +FH + + I +++ G L+ + + Sbjct: 361 ----GQRVLVLGDMGELGEDTAAFHAGIGINVRESGIENLYALG--ELSREAVREFGVGA 414 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + E +D L + L G V+VK S R++ L Sbjct: 415 LHFEHIDALLAELDKELKVGTTVLVKGSRFMKMERVVKHL 454 >gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 445 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 210/388 (54%), Gaps = 26/388 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L + ++G G PQ V G SIDSR + + FFA+KG +DGHDF+ AV +GA Sbjct: 5 ELAKVLRGELRGD-PQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGC 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV D V G SI V + AL +LA+ R + ++ + GSVGKTTTKE++ Sbjct: 64 VVERD-VEHAGKFSIKVSSTQE---ALRELALYRRGIFRGEVVGVAGSVGKTTTKELIHH 119 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS+ ++ G+ N+ IG+PL + MP++VD+ + ELG S +G++ L + +P + V Sbjct: 120 LLSNAAASFRSEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVEVAQPKVRV 179 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 IT + HL +F +E++ EIF G E + + +Y +++L + + + Sbjct: 180 ITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHYALEYYDLPRER--------V 231 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG+ D K + + + E +G S+ ++ G+ QN+L G+++ L Sbjct: 232 TTFGEG--GDLNAGKVRLSLKGTEFEFWGEGFSVPLLSRGV----VQNVLAAFGVLTSLG 285 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D +AL F P +GR LN G F ++D++YNANP S++ A++ L+ + Sbjct: 286 YDPRDFREALKSFTPPQGR----MNLLNFGNFFVVDDTYNANPPSVRNALTTLASLQTT- 340 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEV 395 +++AVLGDM E+G S +H ++ ++ Sbjct: 341 -SKKVAVLGDMLELGVESGRYHAEVGKL 367 >gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 227/469 (48%), Gaps = 47/469 (10%) Query: 20 GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 G+VP G + ++ DSR + P F A G +DGHDF A+++GA VVVN Sbjct: 12 GLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNH- 70 Query: 74 MVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSK--ATIIAITGSVGKTTTKEM 125 PV GV + L + + A RS+ ++ +TGSVGKTTTK+M Sbjct: 71 ----------PVPGVPEEKAILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ALS +T G+ NN +G+P TL R+ ++ + E+GMSH GEI L RP Sbjct: 121 TYAALSGFGETIKTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPD 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +IT I +H+ N E I AK EI GL + + LNYDD F +H ++ Sbjct: 181 VGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAH---VR 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVS 304 ++ +NAD +Q ++ ++ Q VV+ +G H N L + Sbjct: 238 PVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAAT 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D I+ LS F E G+R + ++G T+I++ YNANP SMKAA+++ Sbjct: 298 RLGCDAKRVIRGLSNF---EQTGRRQKVVDSEG-VTVIEDCYNANPDSMKAALAMFKDFP 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALP 419 RR A+LGDM E+GELS+ H +L + + + + G V+A + Sbjct: 354 CK---RRFALLGDMLELGELSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGV- 409 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++H Y E D L +Q GD ++VK+S+ +++++ EE Sbjct: 410 ETLHADSYREAADALLSRVQP----GDAILVKASHGMALEKVLDIFYEE 454 >gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 462 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 223/447 (49%), Gaps = 19/447 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSI 83 +N I +DSR + + F I G D H F+ +KGAG V+ + + + S Sbjct: 25 MLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLTSEHKEKTEEMAETSC 84 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 VDD AL + R R I+ +TGSVGKTTT+EM+ ALS+ Y G+ Sbjct: 85 AWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMIAAALSARFHVYKTPGNS 144 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ +GVP+T++ + + + G+ ELGMS GE+ + + +P +AVIT I H+ Sbjct: 145 NSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAKPDVAVITNIGITHIEQLGSR 204 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I K I +GL G + LN DD + K +G+KT+Y +G + D++ Sbjct: 205 ENIYREKLTIQDGLSDGGILILNGDDDMLCRTRGK---VGVKTVY-YGTGETCDYRAVDL 260 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ GK+ +V+ + +G H N L + + ++ A + L FH Sbjct: 261 VLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNALAAIAVCCERGMTMEEAAEGLLTFHGF 320 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + Y G FT++D+SYNA+PASMKAA+ V ++ R IAVL DM E+G Sbjct: 321 KHRQQVY----ADGRFTVMDDSYNASPASMKAALDVFQGLTGK---RHIAVLADMKELGG 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQS 439 ++H ++ E + + V G +L + + R++ V +S+ + + ++++ Sbjct: 374 NYLAYHREVGEYAANSGVDLVVTLGEACRSLAEGV-RAVKEIPVVEFSDCGE-MVKYLEA 431 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + DGD V+ K SNS G + + +E Sbjct: 432 EIRDGDCVLFKGSNSMGLSAVADQFVE 458 >gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] Length = 457 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 223/458 (48%), Gaps = 25/458 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F + A I ++ ++GI+ DSR I P E F A++G +DGHDF AV KGA Sbjct: 10 FRKIFSANLNSEIDVIDDFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAI 69 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V+ ++ + IP V D L A ++A R + +IAITGSVGKTTTKE++ Sbjct: 70 ALIVD-HHISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELI 128 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + LS+ + +YNN IGVP TL + D+ + E+GM L EI L+ + RP I Sbjct: 129 SAVLSNYGIVHKTKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTI 188 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT + AH+ E IA AK E+ + T N+D+S ++T Sbjct: 189 GLITNVGTAHIGRLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLL-----------VQT 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + L E ++ Q L+ + M+ G H A N L + + Sbjct: 238 AKKVWKGETISYGLEGGDITGE--LLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKC 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + ++ +SV PK GR +RY+ + G L+DE+YNA SMKAA+ +L +I Sbjct: 296 LKLDCNVLMQGISVNLPK-GRSRRYQLS---GDILLLDETYNAGLESMKAALELLKEIPG 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIH 423 R +A+LG M E+GE S H ++ E I H V + +A+ D + Sbjct: 352 Q---RHLAILGTMKELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADG-ALGMV 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 T + L + + GD ++ K+SNS G R++ Sbjct: 408 TECLPTQEELIKRLTEIVQPGDRLLFKASNSVGLNRVV 445 >gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 229/463 (49%), Gaps = 35/463 (7%) Query: 20 GIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-- 71 G+VP F+ ++ DSR + P F A G +DGHDF A++ GA VVVN Sbjct: 12 GLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHP 71 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + V + ++ P D A+ + R + ++ +TGSVGKTTTK+M AL+ Sbjct: 72 VEGVPAEKAILCP-----DSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALA 126 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 +T G+ NN +G+P TL R+ + ++ + E+GMSH GEI L RP + +IT Sbjct: 127 GFGETIKTEGNQNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITC 186 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 I +H+ N E I AK EI GL + + LNYDD F K +H +K ++ Sbjct: 187 IGVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDKFLRAAKLPAH---VKPVWFSL 243 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADV 310 +NAD +Q + ++ Q + VV +G H N L + L D Sbjct: 244 ADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDP 303 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK LS F E G+R + ++G T+I++ YNANP SMKAA+++ + R Sbjct: 304 RGVIKGLSNF---EQTGRRQKVVHSKG-VTVIEDCYNANPDSMKAALAMFKEFPCK---R 356 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIHV- 424 R A+LGDM E+GELS+ H +L + + ++ + G + V+A + +++H Sbjct: 357 RFALLGDMLELGELSREAHEELGRLAAESDLYCLVTYGENAKRTAVVAAAKGV-KTLHAN 415 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +Y E D L I+ GD ++VK+S +++ + E Sbjct: 416 NYREAADALLNRIEP----GDALLVKASRGMALEKVLEIFYAE 454 >gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens TA208] gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens LL3] Length = 456 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 220/451 (48%), Gaps = 20/451 (4%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + Q + G + D+R++ + F +KG H++GH F+ A +KG V+ D Sbjct: 21 VFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPP 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V VDD L AL KLA A +I +TGS GKTTTK+ML L + + + Sbjct: 79 KERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTA 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P AVIT I +H+ + Sbjct: 139 GNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA AK EI GL + G +F D+ LL+ K++ T +G+ + D +L Sbjct: 199 GSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTCRTTT---YGEGADNDLRL 252 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ KQ E ++ + +S + +G H N + + A LS Sbjct: 253 KEIKQAEEGTYFTIDGIDRSFFIPV--LGRHNVMNAMGAYAAGIYFGITPENAALGLSRL 310 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 G R + ++++++YNA+P SMKAAI ++ + G +++ VLGDM E Sbjct: 311 KVT---GMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK--GYRKKMLVLGDMLE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLF 436 +G+ ++FH + ++ I HV+ G + D + HY + + L Sbjct: 366 LGDEEKAFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEEGRVSHYLDKKE-LLEA 424 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I+ + GD+++ K+S + LLE+ Sbjct: 425 IRENAASGDLLLFKASRGMKLEETVKDLLEK 455 >gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] Length = 454 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 140/441 (31%), Positives = 224/441 (50%), Gaps = 16/441 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ D+R ++ F + G H++GH F AV+ GA V+ N +PV Sbjct: 27 IYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKEANP--PFGVPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA + ++ ITGS GKTTTK+M+ L + + + G++NNH Sbjct: 85 LVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQTTYQVHKTDGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ MP + + E+GMS GEI FL++L P AVIT I +H+ + E I Sbjct: 145 IGLPLTILAMPEGTEIAVLEMGMSAKGEIEFLSNLAEPETAVITNIGESHMQDLGSREAI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL+K GT + D+ L++ ++ AL + + +FG++++ D ++ Q Sbjct: 205 ADAKCEITKGLKKDGTFYYLGDEP---LIRDRATALS-QQVKTFGEAEDCDIKVTHINQL 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +E + E Q++G + + +G H +N L + I + + L + Sbjct: 261 AEGT--EFQVEGYAQGFLIPVLGKHNVKNALAAIAIGQHFGLNERQIAQGL---MQTKLT 315 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + T+I+++YNA+P SMKAAI ++ + G RI VLGDM EMG + Sbjct: 316 GMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD--GFANRILVLGDMLEMGSEEE 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG- 444 ++H +L + I HV G + + +S MD L + + V G Sbjct: 374 TYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGDARVFSFMDKEELKKKLADVAGP 433 Query: 445 -DVVVVKSSNSCGFYRLINLL 464 DVV+VK+S +I L Sbjct: 434 DDVVLVKASRGMRLEEVITAL 454 >gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] Length = 470 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 148/446 (33%), Positives = 222/446 (49%), Gaps = 24/446 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GISIDSR+ + FFAI+G +DGH F+ A+ +GA VV V GS + Sbjct: 27 VAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACVVKRGEVTDPGSQLL--L 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDV AL + A R + A +I +TGSVGKTTT+ M+ ALSS ++NN Sbjct: 85 EVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSMIYTALSSCLTGIQSPANFNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVPL++A + F + EL SH+GEIR L + P I VIT I +HL +F +++I Sbjct: 145 FGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K E+FE L TG + DD F + L +++ A ++ G +N D Q +Q Sbjct: 205 AETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKVR----IGLGENNDLQAVSIEQD 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + V Q + VV G H L + + L ++L + GR Sbjct: 261 QQGISFRVNGQQYLLPVV----GRHFVNAALAAIAVARELGISEQDVAESLRNYSTVPGR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH-GEGRRIAVLGDMCEMGELS 385 + + G +T+ID++YNA+P SM+AA VL H G G+RI VLGDM E+G + Sbjct: 317 CHQMQI----GDWTVIDDTYNASPDSMRAACQVLHD---HVGTGKRIMVLGDMLELGPET 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-----LFLFIQSS 440 + +H +L ++ + ++ G ++ RS + +++ + L + Sbjct: 370 ERYHRELGILVCQAGVDLLFACGKQATSVAQG-ARSAGMSHTKIITAADVELLAEDVTDL 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 L GDVV+VK S RL+ L + Sbjct: 429 LEPGDVVLVKGSRGMRMERLLQHLQQ 454 >gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 463 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 148/445 (33%), Positives = 216/445 (48%), Gaps = 18/445 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 G V G+S DSRS+ + F ++GP +DGHDFI AVQ GA + ++ +++A L + Sbjct: 22 DGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGA-VACLSEEVIAG---LPV 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V D L AL LA A R ++A+TGS GKTTTKEML L+ + G++ Sbjct: 78 PVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEMLAGILALRGEGLKTEGNF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P TL R+ D + + ELGMS GEI L + RP I VIT + PAHL + Sbjct: 138 NNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLHNL 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A AK E+F L GT +N DD L A G++ + +G +A+ + Sbjct: 198 QGVARAKGELFAALPAGGTAVINGDDPRVLQLPV---ANGVRRLI-YGCGSDAEVRAEDI 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + L G+S V G + N L L ++ L F Sbjct: 254 AVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHALKVGGAQIVEGLEAFRSC 313 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR A TL+++ YNANP ++KAA+S L ++ G GRRIAVLGDM E+G+ Sbjct: 314 AGRMAVAELASGA---TLLEDFYNANPLAVKAALSALDEMP--GSGRRIAVLGDMLELGD 368 Query: 384 LSQSFH----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + H +D ++ + L + A + +P V ++ D + Sbjct: 369 AASEMHRQTGLDASKCVDLLILLGERAEDTAAGARQGGMPPQ-SVWVVKSHDEAVQLLAG 427 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 L GD V+VK S ++ N L Sbjct: 428 ILRPGDRVLVKGSRGMTMEKICNAL 452 >gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 457 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 220/447 (49%), Gaps = 21/447 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G++ D+R + + F +KG H++GH F+ A + AG+ V D + Sbjct: 24 QTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFE--AGVAAVLWDRSEPNPPENQ 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +LA A +I +TGS GKTTTK+M+ L + + + G++ Sbjct: 82 AVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTRYRVHKTGGNF 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP D + + E+GMS GEI L+ L P AVIT I +H+ + Sbjct: 142 NNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL++ G + D+ + K+++ KT +G D+QL+ Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----KTYSCQTKT---YGAGAQNDYQLQDV 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q E + ++ K+ + +G H N + + + + A K LS Sbjct: 255 SQSEEGTHFTIKGMEKTFFIPI--LGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGLKV- 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++I+++YNA+P SMKAAI + + G G+++ VLGDM E+G+ Sbjct: 312 --TGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++FH + V+S I V+ L F + HY+E D L ++ Sbjct: 368 LEETFHKECGAVISPEKIDRVFTYGKLGAFIAEGALKHFEKERVSHYTEKKD-LLQAVKE 426 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD+++ K+S ++ L+E Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42] gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42] Length = 456 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 217/448 (48%), Gaps = 20/448 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + G + D+R++ + F +KG H++GH F+ A +KG V+ D Sbjct: 24 QTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPPEGR 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL LA A +I +TGS GKTTTK+ML L + + + G++ Sbjct: 82 AVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTAGNF 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P AVIT I +H+ + Sbjct: 142 NNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL + G +F D+ LL+ K++ T +G + D +L++ Sbjct: 202 EGIAEAKLEIINGLREDGVLFYFGDEP---LLRQKTYTCRTTT---YGAGADNDLRLKEI 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 KQ E ++ + +S + +G H N + + A LS Sbjct: 256 KQAEEGTYFNIDGIDRSFFIPV--LGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R + ++++++YNA+P SMKAA+ ++ + G +++ VLGDM E+G+ Sbjct: 314 ---GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMK--GYRKKMLVLGDMLELGD 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQS 439 ++FH + ++ I HV+ G + D R HY + + L IQ Sbjct: 369 EEKAFHEECGAAVNPAEIDHVFTYGTLGAFIADGARRHFEEGRVSHYLDKKE-LLHAIQE 427 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 GD+++ K+S ++ LLE+ Sbjct: 428 MAASGDLLLFKASRGMKLEEIVKDLLEK 455 >gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] Length = 425 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 143/439 (32%), Positives = 220/439 (50%), Gaps = 33/439 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88 +S DSR+I FFA+KGP+++G++F + A+ +GA L VV+ D + +P Sbjct: 16 VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEGDFPDEPRCIRVP---- 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL +LA+ RL+ KA II +TGS GKTTTKE++ LS +T A G+ NNHIG Sbjct: 72 -DALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + I E+G +H GEIR L+ + +P IT AHL F G+E + Sbjct: 131 VPLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNFGKAHLEGFGGVEGVIR 190 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+E++E L E+ TIF+N DD FE L ++ +G F A Q++ Sbjct: 191 GKSELYENLMERGATIFMNADDPVQFEKLAGYANCVG------FSTRNPAYMQIKNLTDG 244 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 V+LQ + V G + N ++ I + +AL + P R Sbjct: 245 P-----AVRLQVDDVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAIAEALESYIPANNR 299 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELS 385 + + +G ++ ++YNANP SM AA+ L+++ SP R+IA+LGDM E+G + Sbjct: 300 SQ----LIERGNLRILLDAYNANPTSMAAALENLAEMDSP----RKIAILGDMFELGAEA 351 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H + N ++L G H ALP + ++ L + L Sbjct: 352 AAEHEAVGRFALSKNPEKLYLVGQHF--YDTALPAARFPDFAALSREL---KANPLTGPA 406 Query: 446 VVVVKSSNSCGFYRLINLL 464 V++K S R++ L Sbjct: 407 TVLIKGSRGMALERVLEFL 425 >gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 152/479 (31%), Positives = 236/479 (49%), Gaps = 46/479 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L ++G IG F++ +S DSR++ Q F A+KG ++DGH F AV GA Sbjct: 5 SLSELATRLKGQLIG--DDLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVDAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V ++ + L V++ A+ ++ R + T +A+TGS GKT+ KEM Sbjct: 63 NALLVERELPINATQLI-----VNNSQKAMGEIGAYVREQVAPTCVALTGSNGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + G++NN IGVPLTL R+ +FG+FELG +H GEI + + LV+P Sbjct: 118 IATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEIDYTSSLVKPS 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSH---- 240 +A++ +A AHL F +E +A AK+EIF + GT +N DD+F + +L+A SH Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHISTGGTAVINADDAFADVMLQASSHVKQL 237 Query: 241 ALGIKTIYS-----FGKSKNADFQLR-KWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHM 292 G+K S F AD R + C +E +E+ L G+ H Sbjct: 238 CFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRVELPLAGR-----------HQ 286 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L I L + + LS+ P +GR G T+ID+SYNANPAS Sbjct: 287 VSNALAATSICIALGLSLPLICQGLSLLQPVKGR----MLPSQLGRVTVIDDSYNANPAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + AAI L +I +G R VLGD+ E+G+ + H +L E+ +S ++ G Sbjct: 343 VGAAIDWLQEI----KGNRCLVLGDLGELGDNAALLHRELGELAKAKGVSALFCVG---- 394 Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQ--SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + + + +DGL +Q + L V+VK S S R++ L + Sbjct: 395 TLSEGASHAFGSKHYHDIDGLVAGLVQYINELPADITVLVKGSRSARMERVVEALTTAY 453 >gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 484 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 153/480 (31%), Positives = 221/480 (46%), Gaps = 27/480 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +++QA+ G +I V VNG+S+DSR++ FFAIKG HYDG FI A GA Sbjct: 7 SLEEVIQAVNGKAISNVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQAFDAGA 66 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVV+ I +P+ VDDV AL LA R + A II ITGS GKTTTKEM Sbjct: 67 IGVVVSKQGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKTTTKEM 126 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS S+NN IGVPLT+ + +GI E+G + GEI L+ + P Sbjct: 127 LYHLLSHFAPVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPGEILRLSEIGLPD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVI I+ HL IE +A K +I + L++ G N D+ L + G Sbjct: 187 IAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNP---LCCEIADKFGGN 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------------GKSMEVVHHGIGYHM 292 I SFG +NA + K+ S + + + E+ G+H Sbjct: 244 KI-SFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQLQVPGHHN 302 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + + L D+ A F + R + G T I+++YNANP S Sbjct: 303 ISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQQI----GNVTFINDAYNANPES 358 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + AA+ +I GR+I + GDM E+G+ S + H +L E S N+ +W G + Sbjct: 359 VFAALKYFEEIDA--AGRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTVGKYAS 416 Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 A KD V ++D + + + DV+++K S +I+ E F Sbjct: 417 DIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIKGSRGMHMETIIDKYREYF 476 >gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 195/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA V+V + + +P Sbjct: 17 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVERE----VADAPLPQLL 72 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 73 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 132 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 133 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 192 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 193 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 250 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L +D + L Sbjct: 251 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 309 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 310 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 362 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 363 GSWAEQAHREVGAYAAGKVSALYAV 387 >gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 220/449 (48%), Gaps = 18/449 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L +A+ G + P G++ DSR + F + G +DGHD+I + GA + Sbjct: 8 ELAEAVTGKLLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVC 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + + G ++ V DD AL LA R + ++ ITGSVGKT+TK+M++ Sbjct: 68 LTSKPIPEVAGCSAVLV---DDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSC 124 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS G++NN IG+PLT+ + + + E+GMS GEI LT + RP IA+ Sbjct: 125 VLSQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRLTAIARPDIAI 184 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I +H+ E I AK EI EGL K G + LN DD + LK K L +T+ Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGK---LPFRTVL 241 Query: 249 SFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +G +D+ ++ EQ + E+ + V G H N L + + Sbjct: 242 -YGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIEMK 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ I + F P G + +N +I+++YNA+P SM+AAI+VL +IS Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISSG- 355 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIH 423 R IAVLGDM EMG +S+ H + E + I+++ SG A+ D+ I Sbjct: 356 -SRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVGQDSGMISQAVADSGNGEIK 414 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + E+ +I ++ GD +++K S Sbjct: 415 LRHFESNKEALKYILGIVMPGDYILIKGS 443 >gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinobacter aquaeolei VT8] gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Marinobacter aquaeolei VT8] Length = 465 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 194/372 (52%), Gaps = 17/372 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +G+S D+RS+ + F A++G +DGH+F+ A+++GA VV+T+ I ++IP Sbjct: 29 WFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQGAVAAVVDTE----ITDVAIPQ 84 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + AL LA R S A ++AITGS GKTT +EM L+ + T G+ NN Sbjct: 85 LVVSDTVQALADLASGNRSESAARLVAITGSSGKTTVREMTGAILAGMGPTLVTEGNLNN 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL R+ D FG ELG S LGEI + RP +A++T AHL F + Sbjct: 145 HIGVPLTLFRLTPDHQFGAIELGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSYQN 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I AK EI +G+ G + LN DD F+ A++ + + G AD+ Sbjct: 205 IVLAKGEIIDGVPADGAVVLNRDDPAFDQWHARAGQRRVLGVSRMGHPA-ADYHAEAI-M 262 Query: 266 CSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++Q + + L S +V G H N L+ L L A L Sbjct: 263 ATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNALLALAACRELGATDQQVQSGLMQVEAV 322 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382 +GR + + A + TLID+SYNANPASMKAA+ VL S +P R+AVLG M E+G Sbjct: 323 KGRLQVLKPASD---LTLIDDSYNANPASMKAALDVLASYPAP-----RLAVLGAMAELG 374 Query: 383 ELSQSFHIDLAE 394 + ++ H + E Sbjct: 375 DEAEELHRQVGE 386 >gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella loihica PV-4] gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella loihica PV-4] Length = 456 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 224/460 (48%), Gaps = 51/460 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR + Q F A+KG +D HDF AV GA ++V ++ ++ P Sbjct: 24 VSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGASALLVEREL-----PIAAPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + A+ ++ + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 79 IVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVATILSTQHQVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL R+ ++G+FELG +HLGEI + + LV+P +A++ +A AHL F +E + Sbjct: 139 VGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKN-ADFQLRKW 263 A AK+EIF L K G +N DD+F ++++ A SH T SF N AD + Sbjct: 199 AKAKSEIFLHLAKDGVAVINADDAFADVMRRAAASH-----TQLSFSSQGNPADVSADEL 253 Query: 264 KQ----C--------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 C EQ + + L G+ H N L I L +D Sbjct: 254 SADALGCYRFRIAYLDEQRTVSLPLSGR-----------HQVSNALAATSICLALGLSLD 302 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 ++ L P +GR + R G F LID++YNANPAS+ AAI L +I EG R Sbjct: 303 EIVQGLMRLQPVKGRMQPTRL----GRFLLIDDTYNANPASVGAAIDWLQEI----EGNR 354 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 VLGD+ E+G+ + H L E I ++ G A +A H+++ +D Sbjct: 355 CLVLGDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAFAGK---HFTD-LD 410 Query: 432 GLFLFIQS---SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + + S L V+VK S S R++ L+ F Sbjct: 411 ALVVDLVSYFNQLTGKVTVLVKGSRSARMERVVEALIAAF 450 >gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47_FAA] gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47FAA] Length = 487 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 142/482 (29%), Positives = 224/482 (46%), Gaps = 27/482 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T DL+ A G + + IS+DSR + + F I G + D H F+ A+ G Sbjct: 6 FTCRDLVLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNG 65 Query: 65 AGLVV---------VNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSK 107 A V V D++ G ++S V D AL + R R K Sbjct: 66 AAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQK 125 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ ITGSVGKTTT+EM+ ALS+ Y G+ N+ +GVP+T+A +P G+ EL Sbjct: 126 LPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIEL 185 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 GMS GE+ + + R AV+T I H+ + I K I +G+ + G++ LN Sbjct: 186 GMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNG 245 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + G + +G S + ++ + + K + V Sbjct: 246 DDRLLRSVIPE----GNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLRV 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G HM N L L + ++ A L F +GR + + +G T+ID+SYN Sbjct: 302 MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTL---KGGITVIDDSYN 358 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P SMKA + VL + P G GRRIAVL DM E+G + FH ++ E ++++ + V L Sbjct: 359 ASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQVVLL 418 Query: 408 GFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + L S + V + E ++ + ++ +L GD V+ K SNS + + L Sbjct: 419 GGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLFKGSNSMKLSQAVRHL 478 Query: 465 LE 466 E Sbjct: 479 EE 480 >gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] Length = 456 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 219/451 (48%), Gaps = 20/451 (4%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + Q + G + D+R++ + F +KG H++GH F+ A +KG V+ D Sbjct: 21 VFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAVLW--DRSEPNPP 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V VDD L AL KLA A +I +TGS GKTTTK+ML L + + + Sbjct: 79 KERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTA 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P AVIT I +H+ + Sbjct: 139 GNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA AK EI GL + G +F D+ LL+ K++ T +G+ + D +L Sbjct: 199 GSREGIAEAKLEIINGLREDGVLFYFGDEP---LLREKAYTCRTTT---YGEGADNDLRL 252 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ KQ E ++ + +S + +G H N + + A LS Sbjct: 253 KEIKQGEEGTYFTIDSIDRSFFIPV--LGRHNVMNAMGAYAAGIYFGITPENAALGLSRL 310 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 G R + ++++++YNA+P SMKAAI ++ + G +++ VLGDM E Sbjct: 311 KVT---GMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK--GYRKKMLVLGDMLE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLF 436 +G+ + FH + ++ I HV+ G + D + HY + + L Sbjct: 366 LGDEEKVFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEEGRVSHYLDKKE-LLEA 424 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I+ + GD+++ K+S + LLE+ Sbjct: 425 IRENAASGDLLLFKASRGMKLEETVKDLLEK 455 >gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 228/467 (48%), Gaps = 25/467 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA + Sbjct: 8 EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAV 67 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + V + S+ V V++ L AL+K+A R + IA+TGS GKTTTK+M+ Sbjct: 68 ITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GMS GEIR L ++ P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLKNIAEPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243 V T I AH+ E I AK E+ E ++ I LN DD + +K + G Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKYSSKYYRYG 247 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 IK+ G+ K D K+ + ++ + E+ G H N L + + Sbjct: 248 IKS----GEIKACDI-----KKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAAICVG 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +V+ +AL F P GK + +G +ID+ YNANP SMKAA+SVL + Sbjct: 299 LEFGINVEDMAEALKDFQP----GKMRLNIIEKGDMKIIDDVYNANPDSMKAALSVLRDL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419 R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 355 PAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGM 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 412 KGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458 >gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] Length = 462 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 223/446 (50%), Gaps = 15/446 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIP 84 + +S D+R ++ F +KG DGHD+I A+ +GA V D G +I Sbjct: 26 MIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVFWGRQDQTPPEGICAI- 83 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD L A +LA + + +I ITGS GKTTTK+M L+S + Y G++N Sbjct: 84 --WVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKDMTAAVLASRYRVYKTQGNFN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+P T+ MP D + + E+GMS GEI FL+ L +P +A IT I +H+ N Sbjct: 142 NDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVAAITLIGESHMENLGSRA 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK EI +GL + G+I ++ E + A + FG+ ++ Q + Sbjct: 202 GIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEHFKVLPFGEGSSSVIQAENIQ 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ ++ V +G + N L L + ++ AI+A+ F + Sbjct: 262 LFEDHTIFDL-VKPSKQSVQLPVLGAYNVNNALAALQVGLECGVPLEQAIEAIQQFELTK 320 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +++++YNA+P +MK+ I + ++ +GR+I VLGD+ E+GE Sbjct: 321 NRTQWVDGIHGS---KILNDAYNASPIAMKSVIQSFTSVAT--KGRKIVVLGDIRELGEQ 375 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSET-MDGLFLFIQSS 440 S++ H ++EV+ +I V+L G + AL +AL + H+HY E L ++ Sbjct: 376 SKALHASISEVMFPEDIQEVYLYGEEMSALFEALKTRFEASHLHYVENDKQALIRLLEEE 435 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 L D V+VKSSN G ++ L E Sbjct: 436 LRQNDQVLVKSSNGTGLLSVVEALKE 461 >gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] Length = 469 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 228/456 (50%), Gaps = 25/456 (5%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G +P+ F + +S D+RS+ P F A+ GP++D + ++ AV GA ++ + S Sbjct: 26 GTLPEVF-HSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGASGILCSRPPAQS-- 82 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L IP++ V D L A+ +LA A R A I ITGS GKTT KEML + +SS +T Sbjct: 83 -LPIPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEMLGLIVSSRYRTGIT 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NNHIG+PLTL P D + E+GMS GEI L L +P I ++T I AH++ Sbjct: 142 RGNLNNHIGLPLTLLNCPSDRTHLVLEMGMSAPGEIAHLAELAQPQIGIVTNILAAHVAG 201 Query: 200 FSG------IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252 F G + IA AK E+ + L G L D LL++ + I SFG + Sbjct: 202 FGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTGC----AILSFGPQ 257 Query: 253 SKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 S AD + + L G+ + G G H+ N + L D Sbjct: 258 SSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAAAYGLGLDAA 317 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + LS F ++GRG Q +++++YNAN +M+ A+ LS ++P +R Sbjct: 318 AMQEGLSRFKLQKGRGSVEH---GQVGCRILNDTYNANVGAMRVALEALSHMAP--APQR 372 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSE 428 IAVLGDM E+GE + + H +LA+ + I ++L+G H+ AL AL S + HY++ Sbjct: 373 IAVLGDMLELGEAADTLHAELAQTILALGIQRIFLAGPHMAALYQALQSSPGLQLFHYAD 432 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L + + GD V+VK S R++ L Sbjct: 433 PV-ALAKDLSHYVGHGDAVLVKGSRGMRMERVVEAL 467 >gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] Length = 469 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 147/473 (31%), Positives = 251/473 (53%), Gaps = 26/473 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHY-DGHDFILHAV 61 +W+ DL A+ G+ VNGI +S+ I P + F A++ + DGH F+ A+ Sbjct: 5 IWSAADLTAAL-----GVPVNVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDAL 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120 +GA V+V+ + + + V++ + AL++LA R + K T I ITGSVGKT Sbjct: 60 ARGADAVIVSKLIDNNTND---KIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE++ S+ KT+A ++NN +G+ L LA +P++ ++ IFEL GE++ L Sbjct: 117 STKEIMFKVFSTHYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELCTRSPGELQKLVK 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ +IAV+T I AH F+ +E + AK EIF GL G +N D FF + Sbjct: 177 ILPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYIN 236 Query: 241 ALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 LGI +++FG + ++ ++ + +++S + + G ++ +GY A N+ Sbjct: 237 KLGINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +I +++ + ++ EGRGK Y + +ID+ YNANPASMK A+ Sbjct: 297 VMLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALD 356 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L QI R++A+LGDM E+G ++ H++L + YNI HV G + + + L Sbjct: 357 LLDQIKAK---RKVAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVISIGSLMKNVYELL 412 Query: 419 PRSIHV-HYSE----TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P + + HY+ T+D L + D D V++K SN ++++ LLE Sbjct: 413 PAELKLSHYNNINELTVDQLLPLLH----DKDYVLIKGSNRMRLWQVVENLLE 461 >gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] Length = 462 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 148/482 (30%), Positives = 237/482 (49%), Gaps = 50/482 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 TF +++ A+QG +V QG N IS D+R I + F A+KG +++G+++I A Sbjct: 4 MTFDEIVNAVQGK---VVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVAS 60 Query: 62 QKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 GA + +++ D + + V+D AL +LA A R + +I ITGS Sbjct: 61 DNGASMCIIDEIKYREDEIEK----GTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGS 116 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK++L ALSS K + G++NN IG+PL + ++ D + E+GM++L EI Sbjct: 117 NGKTSTKDLLAAALSSKYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLNEIH 176 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +P IA+IT + +H+ N E I AK EI + +K + +N D+ L Sbjct: 177 RMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDL--LSG 234 Query: 237 AKSHALGIKTI-YSFGKSKNA-DFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGI--GY 290 KS+ I T G + NA D +L+ ++++E V+ GK E H G Sbjct: 235 VKSNKFSIYTTGMENGNNLNACDIELK-------ENFVEFSVEENGKKFEETFHVEIPGK 287 Query: 291 HMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEG--RGKRYRCALNQGFFTLIDES 345 H N L+ + IL D+ +K L + +GK+ F ++++ Sbjct: 288 HTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIKGKK---------FNILNDC 338 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YNANP SMKAAI VL + RRIAVLG M E+GE S H ++ E + + + Sbjct: 339 YNANPDSMKAAIDVLKNVES---SRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLL 395 Query: 406 LSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 G + A ++ S Y + +G+ + L +GD V+VK+S S F +++ Sbjct: 396 TFGEYNKAFEEGFKSSTKAEYKAFDDYSEGIKYLVNGYLKEGDTVLVKASRSMKFEKIVE 455 Query: 463 LL 464 L Sbjct: 456 EL 457 >gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] Length = 458 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L +D + L Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396 >gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] Length = 448 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 150/470 (31%), Positives = 225/470 (47%), Gaps = 44/470 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PL ++L A H G + V G++ D+RS+ PQE F A G ++DGH F AVQ Sbjct: 6 PLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFAESAVQ 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V+ + A+ L +P D L A +L R + + IIAITGSVGKTTT Sbjct: 66 QGAIAAIVDHPIDAATPQLVVP-----DTLVAYQRLGQWWRQQFQIPIIAITGSVGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE+++ L + +YNN IGVP TL + D D+ + E+GM GEI L+ + Sbjct: 121 KELISAVLGTAGSVLKTEANYNNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT + AH+ E IA AK E+ + LN D+S + A++ Sbjct: 181 QPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQMPAESLAVLNADNSLL-IETAQTVWS 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNML 297 G + Y + D Q QL ++++V H G H A N L Sbjct: 240 GAQVTYGL---DSGDLQ--------------GQLADQTLQVADHSFPLPLPGAHNALNYL 282 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I L D+ + +S+ P GR ++ + ++DE+YNA SM+AA+ Sbjct: 283 AALAIAQHLHLDLAPLQQGISLELPS-GRARKLTLPND---VVVLDETYNAGLESMQAAL 338 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVL 412 +L+Q GE RRIAVLG M E+GE + H + ++ NI + + G + Sbjct: 339 HLLAQTP--GE-RRIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLILDQGPEGTALA 395 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 A +P + MD L IQ GD ++ K+S+S G R+++ Sbjct: 396 AGTTTVPTEQFAEHQALMDYLDQHIQP----GDRLLCKASHSVGLDRIVD 441 >gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] Length = 455 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/444 (30%), Positives = 220/444 (49%), Gaps = 20/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ D+R + + F + G +++GH F+ A + G V+ N ++ + Sbjct: 27 IQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENGVSAVLWNKSEPNPPQDQAVIL- 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD LGAL +L+ A +I +TGS GKTTTK+ML L + + + G++NNH Sbjct: 86 -VDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKDMLHAVLQTQFRVHKTEGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ MP D + + E+GMS GEI LT L P AVIT I +H+ + E I Sbjct: 145 IGLPLTVLSMPEDTEVAVLEMGMSGKGEIDLLTRLANPEAAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+K G + D+ LL +S++ KT FG + D+QL KQ Sbjct: 205 AEAKLEITNGLKKDGILIYIGDEP---LLNKRSYSCRTKT---FGADEGNDYQLEDVKQT 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + ++ K+ + +G H N + V+ A K LS Sbjct: 259 EDGTHFSIKGIDKTFFIPV--LGKHNVLNAIAAFAAGIHFGITVENAAKGLSGLKV---T 313 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R ++ ++I+++YNA+P SMKAAI ++ S G G+++ VLGDM E+G+L Q Sbjct: 314 GMRLELLKSESGVSIINDAYNASPTSMKAAIELIE--SMEGYGKKMLVLGDMLELGDLEQ 371 Query: 387 SFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 FH + V++ I +V+ L F + H+++ + L + Sbjct: 372 EFHTECGAVINPAAIDYVFTYGKLGAFIAAGAHRHFDQERVSHFNDKAE-LLQAVAEKAE 430 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 GD+++ K+S ++ L++ Sbjct: 431 KGDLILFKASRGMKLEEIVKDLMK 454 >gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 461 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 233/469 (49%), Gaps = 29/469 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA V Sbjct: 8 EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 67 Query: 69 VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D V + S+ V V++ L AL+K+A + IA+TGS GKTTTK+M+ Sbjct: 68 ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GM+ GEIR L ++V+P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIVKPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243 V T I AH+ E I AK E+ E ++ I LN DD + +K + G Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLG 301 IK+ G+ K D + + ++ L+ K++E + I G H N L + Sbjct: 248 IKS----GEIKACDIE-------KGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +V+ +AL F P GK + +G +ID+ YNANP SMKAA+SVL Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDIKIIDDVYNANPDSMKAALSVLR 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 + R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNMSKYIAEESKVC 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 410 GMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458 >gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] Length = 458 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L +D + L Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396 >gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas aeruginosa PAb1] Length = 458 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 194/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L +D + L Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 372 GSWAEEAHREVGAYAAGKVSALYAV 396 >gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 469 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 150/445 (33%), Positives = 230/445 (51%), Gaps = 37/445 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I + A+KGP+++GHDFI A GA V+ + ++ + S+PV V+ Sbjct: 29 VSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGASAVIASENV-----TTSLPVISVE 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL L A + IAITGS GKTT KEM L+ A G++NN IGV Sbjct: 84 DTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEMCAAILARRGNVLATNGNFNNDIGV 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ ++ + ELG +HLGEI + T+LV+P +A I A +HL F + +A A Sbjct: 144 PLTLLRLEPHHEYAVMELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARA 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQ 265 K+EIF+GLEK G +N D F E + K T +S + +ADFQ Sbjct: 204 KSEIFKGLEKDGVAIVNVDSQFAEFWQGKLKQTKTLT-FSPQQKNDADFQAEDITIGLDG 262 Query: 266 CSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 C+ S+ V QG+ ++++ G+ H N L+ + + A+++ L Sbjct: 263 CA--SFHLVCPQGEIAIQLTIPGV--HNVGNALVAAALTLQVGANLENVRDGLIAMQQVS 318 Query: 325 GRGKRYRCALNQGFFT----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 GR LN T L+D++YNAN AS+ AAI LS S G R+ VLGDM E Sbjct: 319 GR-------LNVKQLTDQVRLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQS 439 +GE ++ +H + E I++++ G VL+ A+ H+S+ ++ L ++S Sbjct: 368 LGEKARFYHEQVGEYAKQKGINYLYTMG--VLSQSASAVFNENGGHFSD-VESLLAAMES 424 Query: 440 SLV--DGDV-VVVKSSNSCGFYRLI 461 L+ D+ ++VK S S R++ Sbjct: 425 DLLVQQRDISILVKGSRSSKMERVV 449 >gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] Length = 469 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 156/486 (32%), Positives = 225/486 (46%), Gaps = 57/486 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T +++ +A G IG G + +S DSR +AP E F A++G +DGHDFI+ AV K Sbjct: 3 MFTLNEIAEATGGRVIGEA-AGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSK 61 Query: 64 GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 G + + A G++ +P D L AL LA R R + +TGS Sbjct: 62 GVTIFLAEESWAAKHELPKGAGAVLVP-----DTLRALGDLAAYHRRRFNLKTVCVTGSN 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEML L+ G+ NN IG+PLT+ R+ + +FE+GMS GEI Sbjct: 117 GKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDR 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--- 234 L + P + +IT PAHL +E +A AK E+F L+ N DD Sbjct: 177 LAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPT 236 Query: 235 -LKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 L G++ +I S GK + F LR L +V Sbjct: 237 HLNVTRLTFGLRGAEVSSASIQSLGK-RGESFTLR--------------LPDGEQQVTLS 281 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L L D + L F P + KR++ G TLID+SY Sbjct: 282 AYGRHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYD---KRFQLEEVAG-VTLIDDSY 337 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPASM AA++ L ++ GEGR +AVLGDM E+G ++ H +L + L+ N+ ++L Sbjct: 338 NANPASMAAALTTLKEL--QGEGRLVAVLGDMLELGLGTEEAHRELGK-LAAGNVDRLYL 394 Query: 407 SGFHVL-----ALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G V AL+ LP + V + + L F+Q GD ++ K S Sbjct: 395 LGKLVEETAKGALEAGLPAADLVLGRDHDQLAQELLSFVQP----GDCILFKGSRGMKMD 450 Query: 459 RLINLL 464 ++ L+ Sbjct: 451 KVAQLV 456 >gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] Length = 461 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 138/405 (34%), Positives = 197/405 (48%), Gaps = 16/405 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + ++ A+ G I P+ + ISIDSR+I P + F AI G +DGH FI A Sbjct: 1 MIPM-SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGK 119 V KGA ++V+ + A G + + V+D AL LA R+ K T+I ITGS GK Sbjct: 60 VSKGARALIVDHSIKAYPG---VGIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ L G+ NN+ G+PLTL + D + + E+GMS LGEI L Sbjct: 117 TTTKDMIASVLKEKYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT + P HL N + +A K E+ EGL G LNYD+ + + K Sbjct: 177 SISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDM--KD 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNML 297 + G K IY +G S AD K + + + + + G H N L Sbjct: 235 YVEGKKVIY-YGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L D L R R N+ TLI+++YNANP SMKAAI Sbjct: 294 AAIAVARYLRVDWGGIKNGLYNIDLSSLRWD-VRDLGNE--ITLINDTYNANPLSMKAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 I+ R I VLG M E+G++ + H+DL ++ N+ Sbjct: 351 EATFDIAQE---RVITVLGGMLELGDMEEKAHVDLGRYVAERNVD 392 >gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea] gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] Length = 455 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 192/367 (52%), Gaps = 17/367 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+I Q F A+KG +DGH+F AV+ GA ++V+ ++ L+I V Sbjct: 27 VSSDSRAIPEQTLFVALKGDKFDGHNFANTAVENGAIALLVDHEL-----PLNITQVIVK 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D A+ +L + + +A+TGS GKT+ KEM+ LS K G++NN IGV Sbjct: 82 DTQRAMGELGAYLKELIQPRSVALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNNEIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D +FG+FELG +H GEI + + LV+P +A++ +A AHL F +E +ASA Sbjct: 142 PLTLLRLEADDEFGVFELGANHKGEIDYTSSLVKPDVALVNNVASAHLEGFGSLEGVASA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+EIF L TGT +N DD F ++ A S T +FG AD Q + Sbjct: 202 KSEIFNHLTPTGTAIINADDGFASVMLAASTDY---TQLTFGIDSAADIQASDLEADPMG 258 Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++ +++ + G H N L I +D S+ P +GR Sbjct: 259 CYRFKLSYLRETLLIALPLPGRHQVSNALAATAICLSFGLTLDEIKLGFSLLVPVKGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 G +ID+SYNANPAS+ AA+ L +I EG R VLGD+ E+G+ + Sbjct: 317 --MLPTQLGRVRVIDDSYNANPASVTAAVDWLHEI----EGHRCLVLGDLGELGDNAPLL 370 Query: 389 HIDLAEV 395 H +L E+ Sbjct: 371 HTELGEL 377 >gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS678] Length = 460 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 197/388 (50%), Gaps = 22/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I F A+KG +DGHDF A++ GA ++V ++ I L +P Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ + V R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 82 ---DCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FGIFELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F + + K+ SF + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +VV G H N L + L + + LS Sbjct: 256 GHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H +L ++ I ++ +G Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395 >gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Gluconobacter oxydans 621H] gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Gluconobacter oxydans 621H] Length = 373 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 204/372 (54%), Gaps = 11/372 (2%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 AL L AR R + ++AITGSVGKTTTK+ML +ALS+I T+A + SYNNH GVPLTL Sbjct: 3 ALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAVASYNNHWGVPLTL 62 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 AR+P D F I E+GM+H+GEI L VRP +A+ITTI AHL + IE IA K+++ Sbjct: 63 ARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGHMGSIEAIAQEKSDL 122 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 F L G + D + E + A G ++ G S+ A ++ +E S Sbjct: 123 FSALSDKGIAIVPDDAAGQEHFQTALPA-GC-ALWRSGFSETAQLRIENLHCSAEGSHFS 180 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + L V G H+A+N + LG V+ L DV A AL F P GRG+ R Sbjct: 181 LHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQNFVPGAGRGQ-MRTI 239 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 LN L+DESYNA+ S++AA++ L+ + R IA LGD+ E+G + + H LA Sbjct: 240 LND--VRLLDESYNASTPSVRAALATLALLPAQ---RHIAALGDIRELGTFADAEHRSLA 294 Query: 394 EVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + ++ N + + G H+ AL DALP + Y+ L + +L GD+++VK S Sbjct: 295 D--AVQNAKAIAFCCGPHMRALYDALPSELQGGYAADAASLAPLLLKALRPGDLLLVKGS 352 Query: 453 NSCGFYRLINLL 464 +I++L Sbjct: 353 FGSRMRDVISVL 364 >gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella denitrificans OS217] gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella denitrificans OS217] Length = 457 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 219/443 (49%), Gaps = 22/443 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+I F A+KG +D HDF A++ GA ++V ++ +L IP V Sbjct: 27 VSTDSRAIPAACLFVALKGERFDAHDFAATAIENGAKALLVEREL-----ALDIPQLIVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + A+ ++ R +A+TGS GKT+ KEML LS + G++NN IGV Sbjct: 82 NSQKAMGEIGALVRDIVSPICVALTGSNGKTSVKEMLASILSQGHQVLYTAGNFNNEIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ ++G+FELG +H GEI + + LVRP +A++ I AHL F IE IA A Sbjct: 142 PLTLLRLSQADEYGVFELGANHKGEIDYTSSLVRPRVALVNNIGSAHLEGFGSIEGIAEA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+EIF L G +N DD+F EL+K K+ A + +S + NAD Q + Sbjct: 202 KSEIFNHLSADGVAVINADDAFCELMKTKAKAFK-QLSFSREANTNADIQATGLNMNAAG 260 Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + QG+ + V G H N L + L + + L+ P +GR + Sbjct: 261 CYGFTIHYQGQQLAVQLPLAGIHQVSNALAASAMCLALGISLTDIVSGLARLAPVKGRMQ 320 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + G +ID+SYNANP+S+ AAI L + +G VLGD+ E+G+ + Sbjct: 321 PHTL----GRLLVIDDSYNANPSSVSAAIDWLK----NRDGFCCLVLGDLGELGDNAAHL 372 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--- 445 H + + I ++ G L+ +L HY+E + L + + S++ Sbjct: 373 HAQVGQQAKEAQIDALFCCG--SLSENTSLAFG-SPHYAE-LPALLVELTSAIKANRGAV 428 Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468 V+VK S S R++ LL + Sbjct: 429 TVLVKGSRSARMERVVENLLNAY 451 >gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis XB6B4] Length = 470 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 216/460 (46%), Gaps = 41/460 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G IDSR + F A+KG DGH FI +KGA V+ ++ G P Sbjct: 28 IAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVLSEQELSEPAG----PYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ LGA+ KLA R ++ ITGSVGKT+TKEM+ LS G++NN Sbjct: 84 RVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQKYNVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + + E+G+S GE+ L + P I VIT I HL N + I Sbjct: 144 IGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E FE L GT LN DD + + K + +G K A +L K +Q Sbjct: 204 LKAKTESFEHLTPEGTAVLNGDDDKL----CEKKMVNGKPVVFYGIGKEA--KLAKTEQ- 256 Query: 267 SEQSWMEVQLQGKSME---------VVHHG----------IGYHMAQNMLMTLGIVSILT 307 E+ E ++ +E V+H G G H N L + + L Sbjct: 257 GEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLG 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 VD + + GR +++G T+ID+ YNANP SMKA+I VL+ +P Sbjct: 317 LSVDEMKRGIESVKTIGGRSN----LIHKGGMTIIDDCYNANPVSMKASIDVLAA-AP-- 369 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHV 424 GR+IAVLGDM E+GE Q H + E I ++ +G L A+ + V Sbjct: 370 -GRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAGALSENLAQAVGKCSKETEV 428 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 HY +T D L + + GD V+VK+S+ GF ++ L Sbjct: 429 HYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQL 468 >gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 458 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 135/456 (29%), Positives = 227/456 (49%), Gaps = 42/456 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G+S D+R+I + +KG ++GH F+ A +KGA + + + +P+ Sbjct: 26 MIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEAFEKGAAAALWSKHEPNA--PTDVPL 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL +LA A R + +A II +TGS GKTTTK+M+ L ++ + G+ NN Sbjct: 84 IFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGKTTTKDMIASLLGTVYRVQKTEGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL R+ + ++ + E+GMS GEI L+ L P +++IT I +HL E Sbjct: 144 HIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA+AK EI +GL++ G +F+ + D LL+ + + + +FG + D+ + Sbjct: 204 IATAKFEIVKGLKRDG-LFIYHGDE--PLLQTRVENANLSHVQTFGMAPTNDYYPLDIR- 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 VQ G + +V +G H N L + + D+D Sbjct: 260 --------VQADGTTFKVNRWPNETFRMPLLGRHHVMNALAAIAVARFAFVDID------ 305 Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 H KEG R T+I+++YNA+P SM+AA+ +L Q++ G ++ Sbjct: 306 ---HIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYNASPTSMRAALELLGQLT--GYRKK 360 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSE 428 IA++GDM E+GE +FH + E++ I +V G A+ + + V + Sbjct: 361 IAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLTYGERAKAIAERASKRFSEGRVRAYD 420 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ + GDV+++K+S +I+LL Sbjct: 421 DKSELAADVRGIIEAGDVILLKASRGMKLEEIISLL 456 >gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa] Length = 458 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTAVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L +D + L Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQ 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396 >gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] Length = 458 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 139/435 (31%), Positives = 217/435 (49%), Gaps = 26/435 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+G+ IDSR I + + G H DGH ++ A ++GA + D+ ++P+ Sbjct: 27 LVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQKDVPNP--PANVPL 84 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D +L +L+ + R +A ++ ITGS GKTTTK+M+ LS K G++NN Sbjct: 85 LIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFKVQKTEGNFNN 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H GVPLTL + D + + E+GMS GEI FLT + RP +A+IT I AH+ N E Sbjct: 145 HQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSREA 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL + G + D+ + + + GI+T +FGK D +WKQ Sbjct: 205 IADAKLEITEGLPENGLLIYMGDEPLLQ--ERVPNITGIRT-KTFGKGHGNDLYPVEWKQ 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S G I +++ +L +++ L A + + + G Sbjct: 262 ETSGSTFRTNASGD--------IDFYLP--VLGEYNVINSLAAILAGREFGMPFEEIRAG 311 Query: 326 RGKRYRCALNQGFF------TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GK A+ +I+++YNA+P SM+AAI ++ Q G GR+I VLGDM Sbjct: 312 LGKTRLSAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQF--EGTGRKILVLGDML 369 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFI 437 E+GE +FH ++ L+ I V+ G ++A P + V E L + Sbjct: 370 ELGEKEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDFPDN-RVFAFEDKKRLIDML 428 Query: 438 QSSLVDGDVVVVKSS 452 + + GD+V+VK+S Sbjct: 429 KGKIGAGDLVLVKAS 443 >gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] Length = 454 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 138/441 (31%), Positives = 223/441 (50%), Gaps = 16/441 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++ D+R ++ F + G H++GH F AV+ GA V+ N +PV Sbjct: 27 IHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKETNP--PEGVPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA + ++ ITGS GKTTTK+M+ L + + + G++NNH Sbjct: 85 LVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQTTYQVHKTDGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ MP + + E+GMS GEI FL++L P AVIT I +H+ + E I Sbjct: 145 IGLPLTILSMPKGTEIAVLEMGMSAKGEIEFLSNLAEPDAAVITNIGESHMQDLGSREAI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL++ GT + D+ L++ ++ L + + +FG++ + D ++ Q Sbjct: 205 ADAKCEITKGLKEDGTFYYLGDEP---LIRERATQLS-QQVKTFGEADDCDIKVTHINQL 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +E + E Q++G + + +G H +N L + I + + L + Sbjct: 261 AEGT--EFQVEGYAQGFLIPVLGKHNVKNALAAIAIGQHFGLNERQIAQGL---MQTKLT 315 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + T+I+++YNA+P SMKAAI ++ + G RI VLGDM EMG + Sbjct: 316 GMRLELFKTEKGITVINDAYNASPTSMKAAIDLVGDMD--GFANRILVLGDMLEMGSEEE 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG- 444 ++H +L + I HV G + + +S MD L + + V G Sbjct: 374 TYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGDTRVFSFMDKEELKKKLADVAGP 433 Query: 445 -DVVVVKSSNSCGFYRLINLL 464 DVV+VK+S +I L Sbjct: 434 DDVVLVKASRGMRLEEVITAL 454 >gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS155] gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella baltica OS155] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 197/388 (50%), Gaps = 22/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I F A+KG +DGHDF A++ GA ++V ++ I L +P Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 82 ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FGIFELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F + + K+ SF + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +VV G H N L + L ++ + LS Sbjct: 256 GHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H +L ++ I ++ +G Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395 >gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] Length = 449 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 226/461 (49%), Gaps = 21/461 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A G + + VNG + D+R I + + G + DGH +I A GA + Sbjct: 5 EIIEATNGQLLSGDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGASSI 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + V V D L A++ +A R+ + ++ ITGSVGKT+TK+M+ Sbjct: 65 IT----AHKVHYPDKNVILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMIYS 120 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +S+ KT +G+YNNHIG+PLT+ R+ + + I E+GM+HLGEI LT + P +A Sbjct: 121 VVSTKYKTLKTLGNYNNHIGLPLTILRLQ-NEEVMILEMGMNHLGEIEHLTQIALPDVAA 179 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I AH+ E+I AK EI GL+ GT+ +N D+ + A+++ + Sbjct: 180 ITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVNAENYHM-----I 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G++++ D + + E S+ ++ QG+ V G H N L+ + I L Sbjct: 235 RVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVHVPVSGEHFVYNALIAIAIGLSLDI 294 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D++ I + F + R N +ID +YNAN SMK++++VL+Q Sbjct: 295 DMNLCIAGVEHFELTKNRMDMIELKDN---IKVIDGTYNANLDSMKSSLAVLAQYPK--- 348 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVH 425 R+IAVL DM E+GE Q+ H ++ + NI + G +++ +L H Sbjct: 349 -RKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGEASCYIVEKAQSLGLKNAYH 407 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + L ++ L D +++K SN ++ L E Sbjct: 408 FEDNQ-ALMTYLDEMLEPEDTILIKGSNGMHLKEVVEHLKE 447 >gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] Length = 448 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 237/470 (50%), Gaps = 31/470 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +A+ G V+ S++S++I+ F +KG +DGHDF+ A+Q Sbjct: 3 LW-LSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 GA + + + I ++ +P V D L AL LA R + K T+I +TGSVGKT+T Sbjct: 62 GAISFISHKE----IENVRVPYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS KT+ G+ NNHIG+P ++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P+I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 178 KPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + G ++F+ + ++ Q+ ++ G + + +H N L + I Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--KSFNFHDIYNSLFAIAI 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +IL D +A+ ++ R KR + +G T++D++YNA+ SM +AI + + Sbjct: 290 GTILGIDRQLVKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICE 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDA 417 +G++I VLGDM E+GE S+ H + + I V +G F++ A K Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAKKKE 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 R+ V E +D L + + ++ K+S +++ L+E Sbjct: 402 GSRAYFVSKDECLDVL----KREVTTNSTILFKASRGIKLDEIVDEFLKE 447 >gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha proteobacterium HIMB114] gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha proteobacterium HIMB114] Length = 443 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 231/438 (52%), Gaps = 21/438 (4%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDF---ILHAVQKGAGLVVVNTDMVASIGSLSIPVF-- 86 IDSR + F IKGP+ DGH + +L ++ + N+ + ++ + + +F Sbjct: 16 IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSIYLKNLKNSNRVIFCN 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L +N + L + I ITGS GKT+ K++L L+ KK+Y SYNN+ Sbjct: 76 STKDFL--INLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNN 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL ++ +F I+ELGM++ GEI L+++++P++A+IT I AHL N I+ I Sbjct: 134 IGLPYTLVNQNINSEFNIYELGMNNFGEIDSLSNILKPNLAIITNIGEAHLGNLGSIKNI 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AKAEI + + K GTI LN+D FF L K + SFG + A +K Sbjct: 194 AKAKAEIIKNITKQGTIILNHDCKFFNQL-KKISKKNKIKVLSFGSTSKATVS---YKVI 249 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +E++L ++ + I +M NML+ + ++S ++ + + GR Sbjct: 250 SLNE-IEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKSKNYFNKIKNTRGR 308 Query: 327 GK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G ++R + +ID+SYN+NP+S+K++I+ ++S + ++I V+GDM E+G+ Sbjct: 309 GNIVKFRKEI-----IIIDDSYNSNPSSLKSSINQFEKLST--KKKKILVIGDMLELGKF 361 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S+ H ++ LS + + L G + + + Y E ++ + ++ L++ Sbjct: 362 SKKKHGEIGNYLSKMGFNRILLVGKDSKEIYKKIKSTFWCKYFENINIFSKYFKNVLIEN 421 Query: 445 DVVVVKSSNSCGFYRLIN 462 +++ K+SN G +L+N Sbjct: 422 SIIMFKASNGVGLNKLLN 439 >gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hydrogenobacter thermophilus TK-6] Length = 436 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/427 (30%), Positives = 210/427 (49%), Gaps = 27/427 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G IDSR + F A++G +DGHDF A +GA +V + G + V Sbjct: 25 SGFCIDSREVKEGNVFVALRGGRHDGHDFAQEAFSRGAVGAIVQRGIKVPKGKFYVLV-- 82 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 DD L AL ++A+ R +I + GS GKTTTKEM+ LS I K +YN+ I Sbjct: 83 -DDTLEALRRIALYRRRLFTGRVIGVAGSAGKTTTKEMIAFLLSKIGKVCKTPKNYNSQI 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+P ++A D F + E+G S G+++ L L +PH+ VIT I HL F ++++ Sbjct: 142 GLPFSIANFEEDCQFWVVEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETFGCLDDVI 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 EIFE +++ L K SH +K + +FG + D Q K Sbjct: 202 VGNGEIFEDMQERDVAVLP---------KYVSHCYELKNVITFG--EGGDLQATNIKLSK 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E +V+ S+ V + +N L +LG++ L + L+ F P R Sbjct: 251 EGITFQVEDVSLSLRVPSLAV----LENALCSLGVLKALGYNWKELSHHLANFSPAPQRF 306 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 R +G F +ID++YNANP S++ A+ LS +G RIA+LGDM E+G +S++ Sbjct: 307 HLIR----KGSFLIIDDTYNANPPSVRKALLSLSLF----DGYRIALLGDMLELGPMSEA 358 Query: 388 FHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 +H ++ ++ + I G H+ A ++ L + ++S + + ++ S + +G V Sbjct: 359 YHREVGKLCAELGIDACIFYGTHMRFAYEECLRHGVLCYHSSSKEEALRYLSSLIREGSV 418 Query: 447 VVVKSSN 453 ++VK S Sbjct: 419 ILVKGSR 425 >gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] Length = 472 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 219/471 (46%), Gaps = 16/471 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 N +T +++QA G P +GI+IDSR+ + F AI G DGHDF+ A+ Sbjct: 4 NVTFTLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAI 63 Query: 62 QKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 G +V++ A + L + V D AL K+A R +I AITGS Sbjct: 64 NGGVRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGS 123 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTTKE+ L++ + + G++NN IG+P TL + + + ELGM+H GEI Sbjct: 124 NGKTTTKELTAAVLAAKYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIA 183 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P I VIT + P HL +E + +AK E+ E + T LN DD L Sbjct: 184 RLTQICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMANK-TAVLNLDDKLVSTLA 242 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K +T+ FGK A + + K +E + L+ + + V G M N Sbjct: 243 DKYQG---ETVL-FGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNA 298 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + AL +P +GR + LID++YNANPAS AA Sbjct: 299 LAAAAVGVSAGVSPKEIRDALETVNPVKGRQNVVSLGND---VQLIDDAYNANPASFAAA 355 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALK 415 + L ++ +GR I + DM E+G+ S H++L + + +S +++SG++ K Sbjct: 356 VMTLQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAGWTAK 415 Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + + + + + ++ D ++VK SNS G ++ L Sbjct: 416 GAREAGMGIDQVFIDEKPNIVTRLAEAVQAKDRILVKGSNSTGMSEVVQGL 466 >gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis M50/1] Length = 470 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 213/456 (46%), Gaps = 33/456 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G IDSR + F A+KG DGH FI +KGA V+ ++ G P Sbjct: 28 IAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVLSEQELSDPAG----PYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ LGA+ KLA R ++ ITGSVGKT+TKEM+ LS G++NN Sbjct: 84 RVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQKYNVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + + E+G+S GE+ L + P I VIT I HL N + I Sbjct: 144 IGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265 AK E FE L GT LN DD + L K G + Y GK + K Sbjct: 204 LKAKTESFEHLTPEGTAVLNGDD---DKLCEKKMVNGKPVVFYGIGKEAKPAKTEQGEKY 260 Query: 266 CSEQSWMEVQLQGKSME----VVHHG----------IGYHMAQNMLMTLGIVSILTADVD 311 +E+ ++ ++ V+H G G H N L + + L VD Sbjct: 261 LAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVD 320 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + + GR +++G T+ID+ YNANP SMKA+I VL+ +P GR+ Sbjct: 321 EMKRGIESVKTIGGRSN----LIHKGGMTIIDDCYNANPVSMKASIDVLAA-AP---GRK 372 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE 428 IAVLGDM E+GE Q H + E I ++ +G L A+ + VHY + Sbjct: 373 IAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAGALSENLAQAVGKCSKETEVHYFK 432 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 T D L + + GD V+VK+S+ GF ++ L Sbjct: 433 TKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQL 468 >gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] Length = 451 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 224/463 (48%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L A G + +N +S DSR + P F I G + H F+ A++ G Sbjct: 5 TIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGG 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + P+ V D L A+ ++A R + II ITGSVGKTTT+EM Sbjct: 65 ASLTQEHEQAEG----PHPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + + +G+ N+ +GVPLTL R+ G+ E+GMS G+I L ++RP+ Sbjct: 121 IAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPN 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV+T + +H+ + I K +I GL + G ++LN D+ + H + Sbjct: 181 AAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMI-----RKHIGYVT 235 Query: 246 TIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 Y FG SK+ ++ K+ + Q+ + V+ + +G H N L + + Sbjct: 236 HPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPVILNVLGNHNVSNALAAIALGL 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T + L+ F G+R G +T+ID++YNA+P SMKA + +LS Sbjct: 296 AYDVPMETIKRQLATF-----SGQRQNILKIHG-YTVIDDAYNASPDSMKAGLKILSDY- 348 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 GR++AVL DM E+G S +H ++ E L +I+ ++++G +A + S Sbjct: 349 -QDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKEYAEAAQKKNLS 407 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + D L +++ L + DVV++K+SN Y + L Sbjct: 408 LKTKWFSSNDELISYLKDYLKEHDVVLIKASNGMKLYEVAKAL 450 >gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] Length = 458 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+I AK EI EGL GT LN DD F+ KA++ + T +S + + ADF+ Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLT-FSLDRPQ-ADFRAADL 259 Query: 264 KQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + M +LQG + E V + +G H N L L + + L Sbjct: 260 -QRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLGGIVAGLQALQ 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR L +ID+SYNANPASM AAI +LS S GR + VLGDM E+ Sbjct: 319 PVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILSGFS----GRTVLVLGDMGEL 371 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 G ++ H ++ +V +LY + Sbjct: 372 GSWAEQAHREVGAYAAGKVSALYAV 396 >gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] Length = 460 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I F A+KG +DGHDF A++ GA ++V ++ I L +P Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 82 ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FGIFELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F + + K+ SF + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +VV G H N L + L + + LS Sbjct: 256 GHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H +L ++ I ++ +G Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395 >gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] Length = 448 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 135/470 (28%), Positives = 230/470 (48%), Gaps = 31/470 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +AI G V SI+S++I F +KG +DGHDF+ A+Q Sbjct: 3 LW-LSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA + D + +P V D L AL LA AR + + ++ +TGSVGKT+T Sbjct: 62 GAISFISQKDF----EDIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKLSQIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I +IT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 178 KPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDILNLHKKELK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + G ++F+ + ++ Q+ ++ G + + +H N L + + Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +IL D +A+ ++ R KR + +G T++D++YNA+ SM +AI + + Sbjct: 290 GTILEVDRQLVKEAIR----QKERLKRRFEVIKKGSITVVDDTYNASTHSMLSAIDSICE 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417 EG++I VLGDM E+GE S+ H + + I V +G + A K Sbjct: 346 F----EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAIYIFDEAKKKE 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 R+ V E +D L + + ++ K+S +++ L+E Sbjct: 402 GSRAYFVSKDECLDVL----KREVTSNSTILFKASRGVKLDEVVDEFLKE 447 >gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] Length = 460 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I F A+KG +DGHDF A++ GA ++V ++ I L +P Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 82 ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FGIFELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTSADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F + + K+ SF + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +VV G H N L + L + + LS Sbjct: 256 GHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H +L ++ I ++ +G Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395 >gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] Length = 455 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 214/440 (48%), Gaps = 18/440 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ + F A+KG ++DGH+F+ A + GA V+V ++ ++ + VD Sbjct: 27 VSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAENGARAVLVERELPDAVAQII-----VD 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + A+ + R + +A+TGS GKT+ KEM+ LS + G++NN IGV Sbjct: 82 NSQRAMGDIGAYVREKLAPVCVALTGSNGKTSVKEMVATILSQQHQVLYTAGNFNNEIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ FG+FELG +H GEI + + LV+P +A++ +A AHL F + +A A Sbjct: 142 PLTLLRLQAGDQFGVFELGANHAGEIDYTSSLVKPSVAMVNNVASAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+EIF + G +N DD+F ++ A S L T +F AD + Sbjct: 202 KSEIFNHVATDGIAVINADDAFAAVMLAASQHL---TQLTFAIDAAADVKATALHADKGG 258 Query: 270 SW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++ + VV G H N L I L + + LS+ P +GR Sbjct: 259 RYSFDISYADQVESVVLPLAGRHQVLNALAASSICLALGMSLSFINQGLSLLEPVKGRML 318 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R G T+ID+SYNANPAS+ AAI L +IS G R VLGD+ E+G+ + Sbjct: 319 PTRL----GRVTVIDDSYNANPASVGAAIDWLQEIS----GNRCLVLGDLGELGDNAALL 370 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H +L + ++ G A + H + E ++ L +I S D ++ Sbjct: 371 HNELGAEAKAKGVDALFCVGELSEGASHAFGAAHHRNIDELVEKLMTYINESNAD-ITIL 429 Query: 449 VKSSNSCGFYRLINLLLEEF 468 VK S S R++ L F Sbjct: 430 VKGSRSARMERVVEALTMAF 449 >gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] Length = 460 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 22/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR I F A+KG +DGHDF A++ GA ++V ++ I L +P Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 82 ---DCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FGIFELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F + + K+ SF + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADFMSVKARPY---KQLSFSQQDGAAKRHIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +VV G H N L + L + + LS Sbjct: 256 GHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRVRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H +L ++ I ++ +G Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395 >gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] Length = 454 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 30/450 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V GIS D+R+I F A++G ++DG ++I A +KGA VVN D +I PV Sbjct: 25 MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ + LA K +IAITGS GKTTTK++++ L K +YNN Sbjct: 82 IEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+ T+ + D + + E+G + GEIR LT++ P IA+IT I +HL N E Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL++ G LN DDS +K + + L KTI +FG ++D+++ K Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDSILREVK-QEYKLPEKTI-TFGIKPDSDYRMEMIKA 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++E+ +G+H N M++ + ++ D K L E Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R L F L D SY +NP S+ + + + HG R+IAVLGDM E+G+ Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436 + H ++ + ++ I +V +G L + + + +++E D +F F Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q +VD +V+VK+S++ F +L+ + E Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-63q42] gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile ATCC 43255] Length = 457 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 223/464 (48%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K HA + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHAYKL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT FG +KN D + + + GK E+ IG H N + + + Sbjct: 244 KT---FGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F +G R N+ T+I++SYNA+P SM AA+ +L + Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420 +GRR+A+LGD+ EMGE+S+ H L S+ N + G + + + + + Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] Length = 453 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 225/452 (49%), Gaps = 36/452 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + + DSR + P + F A+KG +DGHD+ + +GA V+++ D+ A+ P Sbjct: 21 LIQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSEGATAVLLSHDVGAT------PA 74 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIG 141 V+D AL +LA R + + AITGS GKT+ KEML +A + A G Sbjct: 75 VLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVKEMLAAILRVAAGADDAVLATQG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PLTL R+ + + E+GM+H GEI +LT + RP +A+I AHL Sbjct: 135 NLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLTRIGRPDVALINNATAAHLGGLG 194 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADF 258 +E +A AK EIFEGL G +N DDSF L ++ + G + I FG + A + Sbjct: 195 SVEGVAKAKGEIFEGLADDGVAVINADDSFAGLWQSLA---GRRRIVRFGLNAGDVTAGY 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 L + ++QL + E H G H +N L + + +D + Sbjct: 252 AL-------HSAGCDLQLSTPAGERALHLPVPGLHNIRNALAATAVALSMGVSLDAVAEG 304 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ F +GR +R G LID++YNANPASM+AAI VL+ S G+R+ V+G Sbjct: 305 LAGFAGVKGRLQRKPG--RHGAL-LIDDTYNANPASMRAAIDVLASHS----GKRLLVVG 357 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE + H +L + + L A++ P + H ET++GL Sbjct: 358 DMGELGENEAALHAELGAYAKAAGVDALHALGRLSAGAVEAYGPGASH---HETVEGLAA 414 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +L V+VK S R+I+LL ++ Sbjct: 415 ALLPALDADTTVLVKGSRFMRMERVIDLLQDQ 446 >gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 487 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 221/460 (48%), Gaps = 25/460 (5%) Query: 20 GIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--M 74 G+ PQ + + DSRS+ + F A +G +D H F+ A+ +GA +V D + Sbjct: 29 GVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKALAQGAVCAIVQEDYRL 88 Query: 75 VASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + +PV GV D L A +LA R R +IAITGS GKTTTKEM+ ++ Sbjct: 89 PPAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGSNGKTTTKEMVAQVVAQR 148 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 KT G+ NN IGVP TL ++ + E+G+ G+ L + RP I VIT I Sbjct: 149 WKTLKTEGNLNNRIGVPQTLFQLAPRHQAAVIEMGVDQQGQTTRLCEIARPTIGVITNIG 208 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 P HL F +E A AKAE+ + L + G + LN DD +F+ L A++ + +FG S Sbjct: 209 PDHLEFFGSMEGSAQAKAELLDHLPQDGAVVLNADDEYFDYLAARAQC----RVVAFGIS 264 Query: 254 KNADFQ---LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 A + +R ++ + V + + E+ G H N L + +L Sbjct: 265 PKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIRIRAQGQHNVSNALAAAAVGYVLGLSG 324 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L+ F P R + +L+ G +I++ YNANPASMKAA+ +L+++ G G+ Sbjct: 325 TAIAEGLAKFRPA---AMRSQISLSHG-VQVINDCYNANPASMKAAVQLLAEL---GRGK 377 Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVH 425 R IA LGDM E+G S+ H ++ L+ I H+ G L + + S + Sbjct: 378 RSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACGVLGRELAEGARQAGMASDRIT 437 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + GDVV+VK+S +++ ++ Sbjct: 438 ELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVEAVM 477 >gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999] Length = 469 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/390 (33%), Positives = 201/390 (51%), Gaps = 26/390 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R I+ F A+ GP+++GH F A Q GA ++ + + A + PV Sbjct: 24 ITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVAMIASEPVEAHM-----PVI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL L + + + ITGS GKTT KEM T L + G++NN Sbjct: 79 MVEDTKAALGALGAYVKQKVAPKTVGITGSSGKTTVKEMTTAILKECGSVLSTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + ++ + E+G +H+GEI + T LV+P +A I A +HL F + + Sbjct: 139 IGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTGLVKPDVATIVNAAASHLEGFGSLFGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF----GKSKNADFQLRK 262 A AK+EIF+GL K+GT LNYD F++ K L + IYSF K AD+ + Sbjct: 199 ARAKSEIFKGLSKSGTAILNYDSQFYDFWLGK---LDNELIYSFSLNSAPGKGADYSASQ 255 Query: 263 ----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + C+ M + ++E+ GI H N L+ + + A ++ L+ Sbjct: 256 VGLAFNGCA-HFIMHTPIGEMNIELTLPGI--HNVGNALLAAALSINVGASLENVRDGLA 312 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 +GR + + + L+D+SYNAN AS+ AAI +LS EGRR+ VLGDM Sbjct: 313 KIQHVKGRLEVKQLSEK---VRLLDDSYNANVASVTAAIKLLSSY----EGRRVLVLGDM 365 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+ ++ +H + E+ +I + G Sbjct: 366 AELGDQARHYHEQVGELAKSESIEMFYTLG 395 >gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 452 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 213/448 (47%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR++ PQ F KG H DGH F+ ++Q GA T P+ Sbjct: 26 IKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGAAAAFYQTGQEIDSSLEEQPLI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +LA A + +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 86 YVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKVKKTQGNYNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D D I E+GMS EI L+ + P IAVIT I +H+ + I Sbjct: 146 IGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264 A AK+EI GL+ G + D+ + H +K + S G +N + Sbjct: 206 AKAKSEIVTGLKDNGIFIYDGDEPLLQ-----PHVAQVKHAKLISVGLEQNNTY------ 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318 C+ S + H+ +G H +N + + + + + + IK + Sbjct: 255 VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQ 314 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + G R + + T+I+++YNA+P SMKA+I LS + EGR+I +L D Sbjct: 315 L------TGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM----EGRKILILADC 364 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFI 437 E+G+ SQ H ++ E L NI ++ G + + P H + E+ + + + Sbjct: 365 LELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHAQHFESKEAIIEQL 424 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + LV GD V+VK S ++N ++ Sbjct: 425 KKELVAGDKVLVKGSRGNKLEDIVNAII 452 >gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 448 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/466 (28%), Positives = 229/466 (49%), Gaps = 23/466 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +AI G V SI+S++I F +KG +DGHDFI A+Q Sbjct: 3 LW-LSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA + D L +P V+D L AL LA R + + ++ +TGSVGKT+T Sbjct: 62 GAISFISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 178 KPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + G ++F+ + ++ Q+ ++ G + + +H N L + + Sbjct: 236 --RKVVTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +IL D + +A+ ++ R KR + +G T++D++YNA+ SM +AI + + Sbjct: 290 GTILGVDRELIKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICE 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +G++I VLGDM E+GE S+ H + + I V +G + D + + Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEVKKKD 401 Query: 423 HVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y T D ++ + ++ K+S +++ L+E Sbjct: 402 GTKAYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447 >gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 553 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 139/413 (33%), Positives = 203/413 (49%), Gaps = 36/413 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G S DSR+I EAFFA+KG ++DGH F+ AV+ GA +VV+ A + +P V Sbjct: 36 GTSTDSRTIKRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAELWQAELPTILV 95 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA--CIG-SYNN 145 +D L AL KLA R T++AITGSVGKT+T+EM+ AL + T A C G + NN Sbjct: 96 EDTLTALQKLAAYYRQNYLHTLVAITGSVGKTSTREMIAAAL---RPTLAVSCTGENLNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP T+ ++ D + E+GM H G++ L+ L +P IAVIT I H+ Sbjct: 153 EIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMA 212 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------- 258 I AKAEI GL+ G + LN DD F L A+ IK + + D Sbjct: 213 IMRAKAEIINGLKADGVLLLNADDPFLRQLAAEQKG-KIKQAFVALNTCPPDLPGDCLVA 271 Query: 259 ---------------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 +L++ + ME + + + + G H N L L Sbjct: 272 TDVKIEVDGCASFIIKLQQAPDLEKYGTMEAFVDSNRLPRIKLPVPGEHHVINALFGLAT 331 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + A L F G R R +N LI+++YNA P S++A + L Sbjct: 332 AHLLHQPLTLAANGLRDFSVI---GNRQRI-MNADGVVLINDTYNAAPESIRAGVKTLCF 387 Query: 363 ISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 ++ H E RR IAVLG + E+G ++ H +L L+ +++ +WL G +V A+ Sbjct: 388 LA-HSEKRRAIAVLGGIAELGNMADRLHYELGRYLATADLAEIWLCGPYVAAV 439 >gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] Length = 492 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 155/496 (31%), Positives = 237/496 (47%), Gaps = 65/496 (13%) Query: 6 TFHDLLQAIQGHSIGIV-PQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +L +A+ G + + P G ++ DSR + F A G DGH F+ A Sbjct: 5 TAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVPQAAAA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSVGK 119 GA L + +++ G+ P V DV+ A+ LA V RLR+ T++A+TGSVGK Sbjct: 65 GAVLNLTEREVLDDTGA-PYPSVVVADVVQAMGALASHVLQRLRAAHPVTVVAVTGSVGK 123 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L ++ T A SYN +GVPLT+ D +F + E+G +H+G IR+L Sbjct: 124 TTTKDLLHGIFAAEGPTVAPRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGNIRYLC 183 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRP + + + AH F G+E IA AK E+ E L GT LN DD+ ++ ++ Sbjct: 184 EMVRPDVGAVLCVGSAHAGEFGGVENIARAKGEMVECLAPEGTAVLNDDDARVRPMRERT 243 Query: 240 HALGIKTIYSFGKSKN----ADFQLRKWKQ--------CSEQSWMEVQLQGKSMEVVHHG 287 A + SFG+ R W + C S+ G + V Sbjct: 244 TA----RVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCP--SFTLHFPDGSAFPVHSRL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----GFFTLID 343 IG H N+L + + L EG G R R + + T+++ Sbjct: 298 IGVHHVTNLLAAASVAWAAGVAPERIAAGL------EGTGARSRWRMERTERSDGVTVVN 351 Query: 344 ESYNANPASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++YNANP SMKAA+ L+Q+ + H R IAV+G M E+G+ + S H DL ++L Sbjct: 352 DAYNANPQSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRL 411 Query: 400 NISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLF--------------LFIQSSLVDG 444 NIS HV+A+ D A P V+ + T++G + +++ L G Sbjct: 412 NIS-------HVVAVGDLARP----VYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPG 460 Query: 445 DVVVVKSSNSCGFYRL 460 D+V++KSSN+ G L Sbjct: 461 DIVLLKSSNAAGLNHL 476 >gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] Length = 464 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 144/469 (30%), Positives = 228/469 (48%), Gaps = 24/469 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++++A G I +NG+S DSR++ P + F A+ G YDGHDFI +AV GA Sbjct: 4 TVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+++ D IP+ V+D L AL +LA R T++AITGS GKTTTKE Sbjct: 64 SAVMLSKDT----ADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKEF 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS G+ NN IG+PLT+ + + + E+GMS LGEI L + RPH Sbjct: 120 IYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLADIARPH 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I +H+ + I AK E+F+ LN DD L + L + Sbjct: 180 IGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTLHS---VLPCR 236 Query: 246 TIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +Y + GK +R +K + V G+ ++ + G+H N L ++ Sbjct: 237 VLYFSTRGKGDIKVLNIRLYKN-GYYCYTAVLPDGQREDIYLNIAGFHNVYNSLA--AVL 293 Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + A+V IKA + + R + ++ + LID++YNANP SM+AAI VL Sbjct: 294 VGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPD---IQLIDDTYNANPDSMRAAIEVLC 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + R+IAVLGDM E+G ++++ H +L +++ I + G + D S Sbjct: 351 DLD---SARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVGRLAHFIADGAEAS 407 Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +++ + D ++ + GD +++K S+ ++ L E Sbjct: 408 GMDAHNIYRFNSNDDAISWLDEHITHGDAILIKGSHGMHMDEIVKYLQE 456 >gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-66c26] gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-76w55] gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-97b34] gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-37x79] gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile QCD-32g58] gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] Length = 457 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 223/464 (48%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR + Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT FG +KN D + + + GK E+ IG H N + + + Sbjct: 244 KT---FGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F +G R N+ T+I++SYNA+P SM AA+ +L + Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420 +GRR+A+LGD+ EMGE+S+ H L S+ N + G + + + + + Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris StLB046] Length = 456 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 20/446 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ V G+SID+R+I + F +G +GH F+ A +KGA + D L Sbjct: 20 PETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGAAASLWMIDEPNPPAHL- 78 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P+ V+D AL K+A R +AT I ITGS GKT++K++L ALS K IG+ Sbjct: 79 -PLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTSSKDILAGALSPYFKVQKTIGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN +G+P+T+ ++ D + + E+GMS GEI FLT+L RPH A+IT I AH+ + Sbjct: 138 FNNQLGLPITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGS 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AK EI +GL + G +F + D+ + L AK+ L + +FG S+ + + Sbjct: 198 REGIAKAKFEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKTQ---AFGFSQELNLAASQ 254 Query: 263 WKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ S V+ +QG V +G H +N L + + L + +AL Sbjct: 255 IKATAQGSSFHVEGLIQGDFFISV---LGEHQVKNTLSAMLVSKSLGLTDEQIREALKKV 311 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + G I+++YNA P SM AAI + Q + E + VLGDM E Sbjct: 312 VLTDMRMQLVPV----GDLLFINDAYNAAPTSMHAAIQFVEQTTIRNE--KWLVLGDMLE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSET-MDGLFLF 436 +G + H +A + IS+V L G + L + L + H+ YSE + Sbjct: 366 LGNEEKKMHEGIAGHIHPEEISYVCLYGPRMKWLYNKLQETFDAEHLVYSENEYAPIIEK 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462 IQS + +++VK S ++I+ Sbjct: 426 IQSHATNESILLVKGSRGMKLEKIIH 451 >gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] Length = 457 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 219/447 (48%), Gaps = 21/447 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G++ D+R + + F +KG +DGH F+ A + AG+ V D + Sbjct: 24 QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +LA A +I +TGS GKTTTK+M+ L + + + G++ Sbjct: 82 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP + + + E+GMS GEI L+ L P AVIT I +H+ + Sbjct: 142 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL++ G + D+ + +++ KT +G + D+QL+ Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q E + ++ K+ + +G H N + + + + A K LS Sbjct: 255 SQSEEGTHFTIKGIEKTFFIPI--LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++I+++YNA+P SMKAAI + + G G+++ VLGDM E+G+ Sbjct: 312 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++FH + V+S I V+ L F + HY+E D L ++ Sbjct: 368 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 426 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD+++ K+S ++ L+E Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] Length = 457 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 24/464 (5%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++++A+ G I G + F N ++ DSR + + F + G +DGHD+I+ + ++G Sbjct: 8 EIVKAVNGVLISGDLNTEFSN-VTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQGVSG 66 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D G + I V +D L AL L+ R + + ITGSVGKT+TK+M++ Sbjct: 67 CLTQKDTAGYEGKVVIKV---EDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTKDMVS 123 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L+ G++NN IGVPLT+ + + + E+GMS GEI LT +V+P IA Sbjct: 124 SVLNKKFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTSIVKPDIA 183 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I +H+ + I AK EIFEGL+ G + LN DD+ LK + L +T+ Sbjct: 184 IITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLK---NLLNYRTV 240 Query: 248 YSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +G D+Q EQ + E+ + ++ +V G H N L + L Sbjct: 241 F-YGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAAGIEL 299 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 V I+ + F P GK ++ +I+++YNA+P SM+AAI+VL I+ Sbjct: 300 NIPVKDIIEGIGEFSP----GKMRLNIMDHNGIKIINDAYNASPQSMEAAINVLKDIA-- 353 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRS 421 G+ R IAVLGDM E+G+++ H+ + + +S++ G + ALK + Sbjct: 354 GDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGENGKNIAEGALKAGAEEA 413 Query: 422 IHVHYSETMD-GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ + + G FL + GDV+VVK S ++NLL Sbjct: 414 RVFHFKDNSEAGKFLLDFTK--PGDVLVVKGSRGMKMEEIVNLL 455 >gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] Length = 453 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 149/471 (31%), Positives = 220/471 (46%), Gaps = 32/471 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T + QG +G G V+ + DSR P + F A+KG +D HDF+ V + Sbjct: 1 MMTLSQAARFAQGRLVG--ADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVAR 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V + +A + DD AL +LA R A I +TGS GKTT K Sbjct: 59 GAAALVRDGFELAGASLIQAG----DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVK 114 Query: 124 EMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EML L + A G++NN IG+PLTL ++ + + E+GM+H GE+ +LT Sbjct: 115 EMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +A++ AH +F E++A AKAEIFEGL G +N DD+ L +A Sbjct: 175 LTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADDANLPLFRA--- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G SFG AD R + S + + V G H +N L Sbjct: 232 AAGSHRQLSFGLGL-ADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + + LS F +G R + + T+ID+SYNANP SMKA I VL Sbjct: 291 AAALALEVPLAAIAEGLSAFAGAKG---RLQIKQSPRGLTVIDDSYNANPDSMKAGIDVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R V+GD+ E+GE + + H ++ E L I ++ AL +A R Sbjct: 348 AGLP----GPRCFVMGDIGELGEAAPALHAEVGEHARLRGIEQLF-------ALGEASRR 396 Query: 421 SIHVHYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ +++D L + S L G V+VK S R++ L++ Sbjct: 397 AVQAFGGAGQGFDSIDELLECLDSRLASGTAVLVKGSRFMRMERVVEHLMQ 447 >gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile 630] gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Clostridium difficile] Length = 457 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 222/464 (47%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHVYKL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT FG +KN D + + + GK E+ IG H N + + + Sbjct: 244 KT---FGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F +G R N+ T+I++SYNA+P SM AA+ +L + Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420 +GRR+A+LGD+ EMGE+S+ H L S+ N + G + + + + + Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella putrefaciens 200] Length = 460 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 227/451 (50%), Gaps = 29/451 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR + F A+KG +DGHDF A++ GA ++V ++ +L+IP Sbjct: 24 IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVEREL-----ALNIPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 79 IVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ ++G+FELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F +++ K+ K ++ F + + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADVMSVKARPY--KQLH-FSQQEGAAKRRIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + ++ G+S +V G H N L + L + LS Sbjct: 256 GHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNALAAASVCIALGLSLTDIAHGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRIRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQ 438 +G+ + H +L ++ I ++ +G AL ++ + E++ L L Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG----ALSQHTSQAFGAEHHESVAVLVEKLIKH 423 Query: 439 SSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 + + G V V+VK S S R+++ L F Sbjct: 424 INQLPGQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] Length = 448 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 202/392 (51%), Gaps = 32/392 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +A+ G V SI+S+SI F ++G +DGHDF+ A+Q Sbjct: 3 LW-LSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA + D L +P V D L AL LA AR + + ++ +TGSVGKT+T Sbjct: 62 GAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS + + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIT 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEFK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIGYHMAQNML 297 + + + G ++F+ + ++ G S EV ++ +H N L Sbjct: 236 --RKVVTIGIENESNFRAQNVQK---------HQNGFSFEVDNYTYFIKSFNFHDIYNSL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + +IL D + +A+ ++ R KR +N+G T++D++YNA+ SM +AI Sbjct: 285 FAIAVGTILEIDRELIKEAIR----QKERLKRRFEVINKGSITVVDDTYNASTHSMLSAI 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + +G++I VLGDM E+GE S+ H Sbjct: 341 DSICEF----DGKKILVLGDMLELGEFSEEEH 368 >gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] Length = 463 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 229/474 (48%), Gaps = 42/474 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T D+ + G G+ + F V G+S D+R+I + +KG ++GH F+ A+ Sbjct: 10 TLRDIQSMVDGR--GLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAID 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V+ +PV VDD L AL +LA R + +I ITGS GKTTT Sbjct: 68 KGASAVLWAE--TEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTT 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M+ L++ K G+ NNHIGVPLTL R+ D + + E+GMS+ GEI L+++ Sbjct: 126 KDMIAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P AVIT I +HL E IA AK EI GL+K G +F+ + D + + L Sbjct: 186 EPDAAVITNIGESHLQELGSREGIAQAKLEILSGLKKNG-LFVYHGDEPLLVNRVPDLPL 244 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMA 293 + + FG+ + D+ + + VQ G + VH +G H Sbjct: 245 P-EHVLRFGQGSDNDYYPKA---------VHVQANGTTF-TVHQAPNRSFFLPILGKHHV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPA 351 N L + + + +A S R R L + +T+I+++YNANP Sbjct: 294 YNALAAIAVARFFHVSWEKIQEAFSQLQV-----TRMRMELIETKKGWTIINDAYNANPT 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 SMKAA+ +L +++ G ++IAVLGDM E+G+ FH ++ +L + +V+ G Sbjct: 349 SMKAALQLLHELT--GYEKKIAVLGDMLELGDQEVEFHREIGAMLRPEMVDYVFTYGALA 406 Query: 409 FHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 H+ LA + P V E L + + + GDV+++K+S L+ Sbjct: 407 RHIALAAQPFFPDG-RVKAYEDKQSLAKDLLAVVSSGDVILLKASRGMKLEELL 459 >gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] Length = 455 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 222/456 (48%), Gaps = 40/456 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G++ID R + P AF A G DGH F+ A ++GA + VV D+ ++G Sbjct: 23 PNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALG--- 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V + L A+ LA R + + ++ ITGS GKTTTKEM+ LS+I + Sbjct: 80 -PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTTTKEMVAAVLSAIGPCVYTSAN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +G+PLT+ + + E+GM LG+I L + RP+I VIT I H+ Sbjct: 139 QNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGS 198 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AK E+ L K G LN DD + ++ ++ A I +G S+ D Sbjct: 199 QENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRTTA----RILWYGMSEGCDI---- 250 Query: 263 WKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTADVDTA 313 + + +W + +G S EV HG +G H N L + + L ++ Sbjct: 251 --RATSVAWSQ---EGMSFEVDTPHGTATMRIRLLGQHNVMNALAAIAVGQTLGLSLEDI 305 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 K L + GR + ++ G T+ID++YNA+P+S+ A++ VL +I+ G R+A Sbjct: 306 EKGLGRVEAQRGRLR----LVDAGDVTVIDDAYNASPSSVAASLEVLERIAR--PGHRVA 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSE 428 VLGDM E+GE++ H D+ ++ + + G A + +P V + Sbjct: 360 VLGDMLELGEMAVQAHRDVGRRVASAGVDRLLCVGELAAEMARAAEEAGVP---EVRHFN 416 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ L ++S L GDVV+VK+S R ++ + Sbjct: 417 GLEELLASVRSYLQPGDVVLVKASRGVQLDRAVDAI 452 >gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. natto BEST195] Length = 481 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G++ D+R + + F +KG +DGH F+ A + AG+ V D + Sbjct: 48 QTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFE--AGVAAVLWDRSVPNPPENH 105 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +LA A +I +TGS GKTTTK+M+ L + + + G++ Sbjct: 106 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 165 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP + + + E+GMS GEI L+ L P AVIT I +H+ + Sbjct: 166 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 225 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL++ G + D+ + +++ KT +G + D+QL+ Sbjct: 226 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGAHNDYQLQDV 278 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q E + + +G +G H N + + + + A K LS Sbjct: 279 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKV- 335 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++I+++YNA+P SMKAAI + + G G+++ VLGDM E+G+ Sbjct: 336 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 391 Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++FH + V+S I V+ L F + HY+E D L ++ Sbjct: 392 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKQFEKDRVSHYTEKKD-LLQAVKE 450 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD+++ K+S ++ L+E Sbjct: 451 NASKGDLILFKASRGMKLEEIVKDLIE 477 >gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thiomicrospira crunogena XCL-2] gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 474 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/417 (33%), Positives = 208/417 (49%), Gaps = 32/417 (7%) Query: 5 WTFHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 W DL++A+ G +G P F + +S D+R++ + AIKG H+DGH FI A Sbjct: 3 WNLADLVEAVNGVLAGELLGDEPVVFTS-VSTDTRTLKSGALYIAIKGEHFDGHAFIGEA 61 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119 V++GA V+++ M +P VDD A + A R + S ++ +TGS GK Sbjct: 62 VRQGAVAVLISEPM-----ETVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK +L LS + + G+ NN G+P TL + D+ + E+G +H+ EI +LT Sbjct: 117 TTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVKEIAYLT 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P +AVIT A AHL F +E + K EI +G+ + G LN D FE KS Sbjct: 177 QIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVCEGGKAVLNTDSPGFEYWIEKS 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSMEVVHHGI-GYH 291 LG+ I +FG+++ A+ Q+ + Q Q +W + + EVV + G+H Sbjct: 237 QQLGLSVI-TFGQARFANVQVTDFTQAENQITFTLDLNWQNI----RQAEVVTMPVLGFH 291 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 A N L L F GR ++ + L QG LID+SYNANP+ Sbjct: 292 NAMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSK--LPQGL--LIDDSYNANPS 347 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 S+KAAI L Q+ G LG M E+G S++ H D+A ++H+ L G Sbjct: 348 SVKAAIDALVQLP----GPSAVCLGGMAELGAESEALHQDVAAFAKAKGVTHLLLFG 400 >gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella sp. W3-18-1] gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella putrefaciens CN-32] gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. W3-18-1] gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella putrefaciens CN-32] Length = 460 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 226/451 (50%), Gaps = 29/451 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR + F A+KG +DGHDF A++ GA ++V ++ +L+IP Sbjct: 24 IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVEREL-----ALNIPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ + R + +A+TGS GKT+ KEM+ LS+ + G++NN Sbjct: 79 IVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKYQVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ ++G+FELG +H GEI + + LVRP++A++ + AHL F + Sbjct: 139 IGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLR 261 A AK+EIF L+ GT +N DD+F +++ K+ K ++ F + + A D Sbjct: 199 AQAKSEIFNHLQADGTAIINADDAFADVMSVKARPY--KQLH-FSQQEGAAKRRIDVIAT 255 Query: 262 KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + + G+S +V G H N L + L + LS Sbjct: 256 GHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNALAAASVCIALGLSLTDIAHGLSQL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + G LID+SYNANP S+ AAI+ L +IS + R VLGD+ E Sbjct: 316 TPVKGRMQPSQL----GRIRLIDDSYNANPVSVGAAIAWLKEISEN----RCLVLGDLGE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQ 438 +G+ + H +L ++ I ++ +G AL ++ + E++ L L Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG----ALSQHTSQAFGAEHHESVAVLVEKLIKH 423 Query: 439 SSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 + + G V V+VK S S R+++ L F Sbjct: 424 INQLPGQVTVLVKGSRSAAMERVVDGLTVAF 454 >gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 451 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 223/463 (48%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L A G + +N +S DSR + P F I G + H F+ A++ G Sbjct: 5 TIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDGG 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + P+ V D L A+ ++A R + II ITGSVGKTTT+EM Sbjct: 65 ASLTQEHEQAEG----PHPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTREM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + + +G+ N+ +GVPLTL R+ G+ E+GMS G+I L ++RP+ Sbjct: 121 IAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRPN 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV+T + +H+ + I K +I GL + G ++LN D+ + H + Sbjct: 181 AAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMI-----RKHIGYVT 235 Query: 246 TIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 Y FG S++ ++ ++ Q+ + V+ + +G H N L + + Sbjct: 236 HPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPVILNVLGDHNVSNALAAIALGL 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T + L+ F G+R G +T+ID++YNA+P SMKA + +LS Sbjct: 296 AYEVPMETIKRQLATF-----SGQRQNILKIHG-YTVIDDAYNASPDSMKAGLKILSDYK 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 GR+IAVL DM E+G S +H ++ E L +I+ ++++G +A + S Sbjct: 350 --DSGRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKKYAEAAQKKNLS 407 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + D L +++ L + DVV++K+SN Y + L Sbjct: 408 LKTKWFSSNDELISYLKDYLKENDVVLIKASNGMKLYEVAKAL 450 >gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter sulfurreducens KN400] Length = 470 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 221/474 (46%), Gaps = 20/474 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+T D+L A G + +G+S DSR++ P E F ++G +DGHD++ A + Sbjct: 2 LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPGELFIPLRGERFDGHDYLDAARAR 61 Query: 64 GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G L +V +A + VDD L AL LA R R ++A+TGS GKTTT Sbjct: 62 GVRLTLVERQWLAGRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ + G+ NN IGVP L R+ + + E+GMS GEI L +V Sbjct: 122 KEMLAAILARTGEGLKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEFGEIDRLAEIV 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + +IT PAHL +E +A AK E+F LE + N DD + Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDPLIARCPSPE--- 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+K + SFG + D + ++ ++L + V H G H N L Sbjct: 239 GVKRV-SFGL-RGGDVTAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNVANALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L + + L F P +R+ G LID+SYNANPASM AA++ L Sbjct: 297 AARVLGVAPEEIARGLGEFMPY---ARRFNLE-EVGDVVLIDDSYNANPASMAAALTTLR 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416 +I G GR +AVLGDM E+G ++ H L L+ + +++ G AL+ Sbjct: 353 EIK--GSGRAVAVLGDMLELGIGAEEAHRQLGR-LAATCVDRLYVLGAMAGTVAAGALEG 409 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 L HV + + ++ + G++++VK S R+ + E F A Sbjct: 410 GLEER-HVTIAADHGEIVADLRRTAATGEMILVKGSRGMAMDRVAEGIREAFAA 462 >gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 458 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 218/469 (46%), Gaps = 41/469 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W+ ++ + G G G+S D+RS+ + F A+ GP YDGH F+ + Sbjct: 3 IWSLAEIASKVGGELHG--GDTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSDDL-P 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 AG+ MV+ + +P VDD AL +LA A R T++A+TGS GKTT K Sbjct: 60 AAGV------MVSRLLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML+ T A G+ NN IGVPLTL M + + + E+G +H GEI +LT L R Sbjct: 114 EMLSAIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAYLTSLAR 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT PAHL F IE ++ AK EI+ GL G +N DD + + + Sbjct: 174 PDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADDIYADYWYGLNPG-- 231 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + SFG A+ +W+ + + + G+ + G H A N L Sbjct: 232 -RRVISFGLDHVAEVS-GEWQAPGS---LRLHMNGRVHALELAFPGRHNALNALAAAAAA 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + ++ L+ HP G R +G L+D+SYNANPAS +AA+ VLS Sbjct: 287 LGAEIPEEAILRGLARVHPVSG---RLVAVPGRGGALLLDDSYNANPASTRAALEVLSG- 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 HG G R VLGDM E+G+ ++ H ++ I H FH + P S H Sbjct: 343 --HG-GERCMVLGDMGELGDEGETLHAEIGARARELGIEH-----FHAVG-----PLSAH 389 Query: 424 --------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L ++ L G V+VK S S R++ L Sbjct: 390 AVRAFGEGAQHHPDQAALIEALRPMLHAGMTVLVKGSRSARMERVVQAL 438 >gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] Length = 471 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 138/442 (31%), Positives = 238/442 (53%), Gaps = 12/442 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + +S+ I P + F A++ + DGH F+ A+ +GA V+V + ++ + + I + V Sbjct: 29 VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIV-SKLIDNNANDKIIL--V 85 Query: 89 DDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 ++ + AL++LA R + K T I ITGSVGKT+TKE++ S+ KT+A ++NN + Sbjct: 86 NNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTYYKTFASRKNFNNLL 145 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ L LA +P++ ++ IFEL S G ++ L ++ +IAV+T I AH F+ +E + Sbjct: 146 GMLLNLASVPINTEYAIFELSTSSPGGLQKLVKILPLNIAVLTNINSAHTEFFNSLEHLT 205 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 AK EIF GL G +N D F+ + LGI +++FG + A+ + + Sbjct: 206 EAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINKLGINNVFTFGTHQEANSNITNYYYDA 265 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +++S + + G + +GY A N+ + + +I +++ + ++ EG Sbjct: 266 DNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVMLVSNICKINLNKVTEVINTLRNYEG 325 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 RGK Y + +ID+ YNANPASMK A+ +L QI R++A+LGDM E+G + Sbjct: 326 RGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLGQIKAK---RKVAILGDMLELGNNT 382 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDG 444 + H++L + YNI HV G + + + LP + + HY+ + + L D Sbjct: 383 KEHHLNLVTYIKKYNI-HVIAIGSLMKNVYELLPAELKLSHYNNINELPVDQLLPLLHDK 441 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D V++K SN +++I LLE Sbjct: 442 DYVLIKGSNRMRLWQVIENLLE 463 >gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. SMY] Length = 481 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G++ D+R + + F +KG +DGH F+ A + AG+ V D + Sbjct: 48 QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 105 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +LA A +I +TGS GKTTTK+M+ L + + + G++ Sbjct: 106 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 165 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP + + + E+GMS GEI L+ L P AVIT I +H+ + Sbjct: 166 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 225 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL++ G + D+ + +++ KT +G + D+QL+ Sbjct: 226 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 278 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q E + + +G +G H N + + + + A K LS Sbjct: 279 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 335 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++I+++YNA+P SMKAAI + + G G+++ VLGDM E+G+ Sbjct: 336 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 391 Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++FH + V+S I V+ L F + HY+E D L ++ Sbjct: 392 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 450 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD+++ K+S ++ L+E Sbjct: 451 NASKGDLILFKASRGMKLEEIVKDLIE 477 >gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella frigidimarina NCIMB 400] gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 462 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/451 (30%), Positives = 221/451 (49%), Gaps = 23/451 (5%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G + +S DSR+I Q F A+KG +DGHDF+ A++ GA ++V+ +V + I Sbjct: 22 GVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLVDHLLVDHPFAADIA 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K+ R +A+TGS GKT+ KEML LS + G++N Sbjct: 82 QIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEMLATILSQHHQVLFTAGNFN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLTL R+ ++G+FELG +H GEI + + LV P +A++ + AHL F +E Sbjct: 142 NEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSSLVLPQVALVNNVGNAHLEGFGSLE 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A AK+EIF L GT +N DD F + + +S + F + N D + Sbjct: 202 GVAQAKSEIFNHLTPDGTAIINADDKFADFMLQQSQG---RKHLRFSREMNVDADVTATD 258 Query: 265 QCSEQS---WMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ + + G+ EVV + G H N L + L + + ++ Sbjct: 259 IVADANGCYRFTLTFDGQQ-EVVQLPLAGLHQVSNALAAASMCIALDISLYDIAQGFALL 317 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + + + G LID+SYNANP S+ AAI+ L Q +G R VLGD+ E Sbjct: 318 KPVKGRMQPH----DLGRVLLIDDSYNANPTSVSAAINWLQQ----RDGYRCLVLGDLGE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ + H + + I ++ G +A H+ + L + +Q Sbjct: 370 LGDNAAPLHASIGLQVKNAAIESLFCCGQLSANTSEAFGSE---HFC-AQEPLIVALQKQ 425 Query: 441 LVD--GDV-VVVKSSNSCGFYRLINLLLEEF 468 L G++ V+VK S S R+++ LL+ + Sbjct: 426 LASTTGNITVLVKGSRSAAMERVVDSLLDAY 456 >gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis] gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 457 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 217/447 (48%), Gaps = 21/447 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G++ D+R + + F +KG +DGH F+ A + AG+ V D + Sbjct: 24 QTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFE--AGVAAVLWDRSVPNPPENH 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +LA A +I +TGS GKTTTK+M+ L + + + G++ Sbjct: 82 AVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNF 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP + + + E+GMS GEI L+ L P AVIT I +H+ + Sbjct: 142 NNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL++ G + D+ + +++ KT +G + D+QL+ Sbjct: 202 EGIAEAKLEIINGLKEDGVLIYIGDEPLLQ----NAYSCQTKT---YGTGTHNDYQLQDV 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q E + + +G +G H N + + + + A K LS Sbjct: 255 SQSEEGTHFTI--KGIENTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKV- 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++I+++YNA+P SMKAAI + + G G+++ VLGDM E+G+ Sbjct: 312 --TGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL--EGYGKKMLVLGDMLELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++FH + V+S I V+ L F + HY+E D L ++ Sbjct: 368 LEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKD-LLQAVKE 426 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD+++ K+S ++ L+E Sbjct: 427 NASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] Length = 450 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 222/449 (49%), Gaps = 42/449 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I D+R I P E F A++G ++DGHDF+ HA+ +GA +V++D + + V V Sbjct: 33 IQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQGAIAAIVDSDY----ENADVAVLQVR 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A +L R R +I +TGSVGKTTTKE++ L++ + + G++NN IGV Sbjct: 89 DTLQAYQQLGRWWRDRLNIPVIGVTGSVGKTTTKELIAAVLATEGRVHKTFGNFNNEIGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + D+ + E+ M G+IR LT + RP+I VIT + AH+ E IA A Sbjct: 149 PKTLLELDTEHDYAVVEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSEEAIARA 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+ + + LN+D+ LL A + + + ++G S D Q ++ Sbjct: 209 KCELLAEMPEDSVAILNHDNP---LLMATAQQVWSGEVVTYGLS-GGDIQ----GVLTDN 260 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++V M + G H A N L L + +L D T + V P GR +R Sbjct: 261 QTIKV----GEMRLPLPLPGRHNASNFLAALAVAQVLGIDWSTLQNGVKVNMPT-GRSQR 315 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + L+DE+YNA P +M AA+ +L+ R+IAVLG M E+GE S H Sbjct: 316 FTLPHD---IILLDETYNAAPEAMTAALQLLADTPGK---RKIAVLGAMKELGERSLQLH 369 Query: 390 IDLAEVLSLYNISHVWLSGFHVLAL-KDA---------LPRSIHVHYSETMDGLFLFIQS 439 + E + + L G VL KDA +P +++ + L F+Q+ Sbjct: 370 QRVGET-----VQRLQLDGLLVLVDGKDAQAIAQSAEGIPSECFTTHADLVARLKTFVQA 424 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 GD ++ K+++S G R++N EF Sbjct: 425 ----GDRILFKAAHSVGLDRVVNQFRAEF 449 >gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] Length = 448 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 187/384 (48%), Gaps = 21/384 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 G+S D+RS+ P F A+KG ++DGH F+ A +KGA ++ + S+P Sbjct: 21 AQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQTI-----EDSLPQV 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R R + ++A+TGS GKTT KEM+ L A G+ NN Sbjct: 76 EVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASVLGGAGSVLATQGNLNND 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + F + E+G + EI +L+ LVRP +A+IT PAHL F ++ + Sbjct: 136 IGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQVALITNAGPAHLDGFGDLKGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIF+G+ G LN DD F + + L + FG +++A+ Sbjct: 196 ARAKGEIFQGVNPGGVAVLNADDPHFSYWRDLAGEL---PVIGFGLTQSAEVTAHHLAAH 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 SE S + V G H N L + L D D AL+ GR Sbjct: 253 SEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAIALGLDRDQISAALAALPSIPGR 312 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + R A G L+D++YNANPAS+KAA+ +L++ G R VLGD E+GE + Sbjct: 313 LQIRRGA---GGMRLLDDTYNANPASLKAALELLAEFP----GERFLVLGDFAELGEEAA 365 Query: 387 SFH------IDLAEVLSLYNISHV 404 H A V LY + H+ Sbjct: 366 PLHRMMGKQARAAGVNRLYTLGHL 389 >gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] Length = 458 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 190/386 (49%), Gaps = 27/386 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S DSR+I P + F A+ GP +DGHD++ KGA +V + + +P Sbjct: 26 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVERE----VADAPLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSY 143 V D AL +L R + + A+TGS GKTT KEML L + + A G+ Sbjct: 82 VRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL ++ + ELG S +GEI + L RPH+A+IT AH+ F G Sbjct: 142 NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVGLTRPHVAIITNAGTAHVGEFGGP 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK 262 E+I AK EI EGL GT LN DD F KA+++ + + +F + ADF Sbjct: 202 EKIVEAKGEILEGLAADGTAVLNLDDKAFATWKARANG---RPLLTFSLEQAQADFHAAD 258 Query: 263 WKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 Q + M +L G + E V + +G H N L L +D + L Sbjct: 259 L-QRDARGCMGFRLHGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQAL 317 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR L +ID+SYNANPASM AAI +L S GR + VLGDM E Sbjct: 318 QPVKGRAV---AQLTASGLRVIDDSYNANPASMLAAIDILGGFS----GRTVLVLGDMGE 370 Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401 +G ++ H ++ +V +LY + Sbjct: 371 LGSWAEQAHREVGAYAAGKVSALYAV 396 >gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] Length = 452 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR++ PQ F KG H DGH F+ ++Q GA T P+ Sbjct: 26 IKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTGQEIDSSLEEQPLI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +LA A + +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 86 YVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLKTQFKVKKTQGNYNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D D I E+GMS EI L+ + P IAVIT I +H+ + I Sbjct: 146 IGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264 A AK+EI GL+ G + D+ + H +K + S G ++ + Sbjct: 206 AKAKSEIVTGLKDNGIFIYDGDEPLLQ-----PHVAQVKHAKLISVGLEQHNTY------ 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318 C+ S + H+ +G H +N + + + + + + IK + Sbjct: 255 VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQ 314 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + G R + + T+I+++YNA+P SMKA+I LS + EGR+I +L D Sbjct: 315 L------TGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM----EGRKILILADC 364 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFI 437 E+G+ SQ H ++ E L NI ++ G + + P H + E+ + + + Sbjct: 365 LELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQPYVSHAQHFESKEAIIEQL 424 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + LV GD V+VK S ++N ++ Sbjct: 425 KKELVAGDKVLVKGSRGNKLEDIVNAII 452 >gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 448 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 203/387 (52%), Gaps = 22/387 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +A+ G V SI+S+SI F +KG +DGHDF+ A+Q Sbjct: 3 LW-LSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA + D L +P V D L AL LA AR + + ++ +TGSVGKT+T Sbjct: 62 GAISFISQKDF----DDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS + + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEFK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + G ++F+ + ++ Q+ ++ G + + +H N L + + Sbjct: 236 --RKVVTIGIENESNFRAQNVQK--HQNGFSFEVGGYTYFI--KSFNFHDIYNSLFAIAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +IL D + +A+ ++ R KR +N+G T++D++YNA+ SM +AI + + Sbjct: 290 GTILEIDRELIKEAI----LQKERLKRRFEVINKGSITVVDDTYNASTHSMLSAIDSICE 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH 389 +G++I VLGDM E+GE S+ H Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEH 368 >gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. m3-13] Length = 453 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 225/453 (49%), Gaps = 48/453 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-GAGLVVVNTDMVASIGSLSIPV 85 V G+S D+R + + I G +++GH F+ A++K GA D L++ V Sbjct: 27 VEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKKGAVASFWQKDQPEPPTDLNLIV 86 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD + AL LA + R + ++ ITGS GKTTTK+M+T L + + + G+YNN Sbjct: 87 --VDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTKDMVTSVLETTFRVHKTAGNYNN 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ M D + + E+GMS GEI L+ + +P AVIT I +H+ + E Sbjct: 145 HIGLPLTILSMKEDTEVAVLEMGMSGRGEIELLSSIAKPDAAVITNIGESHMQDLGSREG 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWK 264 IA AK EI GL++ G + +N D+ + +G KT + FG N D+Q + Sbjct: 205 IAEAKLEIAAGLKQDGKLIINGDEPLL------TDRVGGKTNVIPFGLKANNDYQAK--- 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHM----AQNMLMTLG---IVSILTADVDTAIKAL 317 +++ GIG H + + LG + + L A + + + Sbjct: 256 -----------------DIMLKGIGTHFIIEETEYFIPVLGAHNVTNALAAIIVGELFGV 298 Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 S + K+G G R G +T+I+++YNA+P SM+AA+ +L + G G++ Sbjct: 299 SEENRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDLLGSLD--GYGKK 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---SGFHVLALKDALPRSIHVHYSE 428 IAVLGDM E+G++ ++FH ++ + + N+ +V+ G + + HV Sbjct: 357 IAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVFTFGALGMEIAKGAQEVMEPSHVKPFM 416 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 L ++ L +GDVV+VK S +I Sbjct: 417 NKQELTRELRPLLENGDVVMVKGSRGMKLEEVI 449 >gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 221/464 (47%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++ T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTLKEKEHVYKL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT FG +KN D + + + GK E+ IG H N + + + Sbjct: 244 KT---FGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F +G R N+ T+I++SYNA+P SM AA+ +L + Sbjct: 301 CLNISLDYIKKGLKNF---KGTKMRLDIIKNEK-LTIINDSYNASPDSMDAALKILGRY- 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---- 420 +GRR+A+LGD+ EMGE+S+ H L S+ N + G + + + + + Sbjct: 356 ---KGRRVAILGDILEMGEISEYGH-RLVGKSSMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] Length = 460 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 144/473 (30%), Positives = 230/473 (48%), Gaps = 25/473 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++F+++ +A + G +SIDSR+I + F A+KG +DGHDF+++A +KG Sbjct: 4 FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ S VF V D A LA R+R ++A+TGS GKTTTK+ Sbjct: 64 ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ LSS + + NN IG+ LTL + + D + E+GM G+I+ L ++ +P Sbjct: 124 MISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSH 240 I VIT + +H+ E IA AK E+ + L + G LN DDSF E K + Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKGRVI 243 Query: 241 ALGIKTIYS-FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G+ Y+ +G K +F + C ++++ +V L+ +G H + L Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAF-KVNLK---------LLGIHNVYDALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 IL DV + LS F P+ GR + + +ID++YNANP SM+ A+ Sbjct: 294 ATSTARILGVDVTKIQRVLSDFSPRAGR----QSLIEINGIKIIDDAYNANPLSMEMALR 349 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA 417 L QIS + VL DM E+GE + FH ++ + + + + K A Sbjct: 350 SLKQISAK---NKYLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGA 406 Query: 418 LPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + + YS +T I + GDV ++K S+S Y + +LL EE Sbjct: 407 KEKGMKMIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459 >gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 147/480 (30%), Positives = 235/480 (48%), Gaps = 47/480 (9%) Query: 3 PLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L F +++ A+ G I + N IS D+R I F A+KG +++ +D+I+ A Sbjct: 2 ELLKFEEIVNAVGGKVHINSGNHKYTN-ISTDTRKITKDSIFIALKGDNFNANDYIVDAS 60 Query: 62 QKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA L +V+ + S + + + V++ AL LA R + II ITGS GKT Sbjct: 61 DKGANLCIVDEINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK++ ALSS K + G++NN +G+PL + + D + E+GMS+ EI L Sbjct: 121 STKDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAK 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P IA+IT I +H+ N E I AK EI + K + +N ++ + +K+ + Sbjct: 181 VAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVKSNEY 240 Query: 241 ALGIKTIYSFGKSKNADFQLR---------KWKQC--SEQSWMEVQLQGKSMEVVHHGIG 289 L S G K+ D+ ++ C E+ + + GK H I Sbjct: 241 KL-----MSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGK------HNIL 289 Query: 290 YHMAQNMLMTLGIVSILTADVD-----TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 M L IV+ + D++ IK LSV R G FT++D+ Sbjct: 290 NSM-------LAIVAGRSLDIEYDKLKQGIKNLSV------TSMRLDIVKKDG-FTIVDD 335 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 SYNA+P SMKAAI V++ I + R+IA+LG M E+G+ S FH ++AE NI + Sbjct: 336 SYNASPDSMKAAIDVITTIKGN---RKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFL 392 Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G A K+ +++ T++ FI S+L + D+++VK+S S F ++N L Sbjct: 393 ITVGEFNEAYKEGYNNNLNFKEFNTIEKAADFITSNLKEKDIILVKASRSMQFEYIVNKL 452 >gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] Length = 455 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 25/394 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PL + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 2 LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + + + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----VADVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233 Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G + SF +S ADF R + C + G+++ V + +G H N Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L+ P +GR + A N +ID+SYNANP SM A Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AI +L+ S GR + VLGD+ E+G+ ++ H Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375 >gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 448 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/461 (28%), Positives = 226/461 (49%), Gaps = 22/461 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++ AI G V SI+S++I F +KG +DGHDFI A+Q GA Sbjct: 7 EIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISF 66 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLT 127 + D L +P V+D L AL LA R + + ++ +TGSVGKT+TKE + Sbjct: 67 ISQKDF----DDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIF 122 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + +P I Sbjct: 123 NVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPDIG 182 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + + + Sbjct: 183 VITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKELK----RKV 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G ++F+ + ++ Q+ ++ G + + +H N L + + +IL Sbjct: 239 VTIGIENESNFRAQNVQR--HQNGFSFEVGGYTYFI--ESFNFHDIYNSLFAIAVGTILG 294 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + +A+ ++ R KR + +G T++D++YNA+ SM +AI + + Sbjct: 295 VDRELIKEAIR----QKERLKRRFEVIKKGSITIVDDTYNASTHSMLSAIDSICEF---- 346 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-Y 426 +G++I VLGDM E+GE S+ H + + I V +G + D + + Y Sbjct: 347 DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVICTGKDAFYIFDEVKKKDGTKAY 406 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 T D ++ + ++ K+S +++ L+E Sbjct: 407 FVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447 >gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] Length = 445 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 232/471 (49%), Gaps = 37/471 (7%) Query: 4 LWTFHDLLQA-IQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L T DLLQA +QG H +G+ V + DSR + P F A++G +DGHDFI A Sbjct: 4 LQTVADLLQAPLQGDPHLLGLP----VQALCTDSRRLQPGSVFVALRGERFDGHDFIPQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+ S + P F V D L A ++A A R + ++AITGS GKT Sbjct: 60 LSKGAVAVI-------SQRPVEGPHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML ALS ++NN IGV TL R+ + F + E+ M GEIR L Sbjct: 113 TTKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP A+IT I AH+ E IA+AK E+ + L + G LN +D LL A + Sbjct: 173 MARPTHALITHIGTAHIGRLGSREAIAAAKCELLQELGQ-GIAVLNGEDP---LLLATAA 228 Query: 241 ALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +L ++G ++ LR +W ++ V ++G ++ V G H A N + Sbjct: 229 SLWSGKTLTYGLAQG---DLRGEWDPQAQT----VTVEGLTLPVPLP--GRHHALNWMGV 279 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L + + + L + P EGR + + A G + DE+YNA+P +M AA+ + Sbjct: 280 LAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAALHL 336 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417 L+Q + RR A+LG M E+GE + + ++ + + VWL + L D Sbjct: 337 LAQTAGK---RRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGEMQPLVDE 393 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P + V E L +Q + GD ++ K++ + R+++ L+ + Sbjct: 394 KP-AAEVERFEEASALVEGLQQQVRAGDRLLFKAARAVELERVLHRFLQAW 443 >gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 455 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 186/375 (49%), Gaps = 32/375 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+SIDSR+IAP + F A+ GP +DGHD++ KGA +V ++ S ++P Sbjct: 26 DGVSIDSRAIAPGQLFVALAGPRFDGHDYLNEVAAKGAVAALVEREVTNS----TLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D AL +L R + AITGS GKTT KEML L + A G+ NN + Sbjct: 82 VNDTRQALGQLGALNRAAYGNPVAAITGSSGKTTVKEMLASILRTRGPVLATRGNLNNDL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + + ELG S LGEI + + +PH+AV+ AH+ F G E+I Sbjct: 142 GVPLTLLELAPEHSAAVIELGASRLGEIAYTVGMTKPHVAVLNNAGTAHVGEFGGPEKIV 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI EGL+ G LN DD FE+ K ++ G+ K F L Sbjct: 202 EAKGEIIEGLDADGVAVLNLDDKAFEIWKTRA-----------GERKVLTFALSNLAANF 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTADVDTA---------IKAL 317 S ++ +G +H G Q N+L T + + L A + L Sbjct: 251 YASDLDRDARGCPAFNLHSPDGAERVQLNLLGTHNVANALAAAAAAHALGVSLPGIVAGL 310 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + P +GR L +ID++YNANP+SM AA+ +L+ S GR + VLGD Sbjct: 311 NAVQPVKGRSV---AQLASNGMRVIDDTYNANPSSMCAAVDILAGFS----GRTVLVLGD 363 Query: 378 MCEMGELSQSFHIDL 392 + E+GE +Q H D+ Sbjct: 364 IGELGEWAQQGHHDV 378 >gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] Length = 457 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 224/455 (49%), Gaps = 51/455 (11%) Query: 24 QGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 QG GI D+R + P E F A++G ++DGH F+ A+++GA + TD V Sbjct: 38 QGLTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGA--IAAITDQVLPG---D 92 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYAC 139 P V D L A L R + +IA+TGSVGKTTTKE++ L S+ KT A Sbjct: 93 FPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTKELIAAVLGLQGSVLKTEA- 151 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 +YNN IGVP TL ++ D + + E+GM LGEI LT + RP IAVIT + AH+ Sbjct: 152 --NYNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRIARPDIAVITNVGTAHIGR 209 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 E IA AK E+ + T LN D+ L++ + KT+ S+G + Sbjct: 210 LGSREAIAQAKCELLAEMPTTSVAVLNADNPL--LIETATEVWSGKTL-SYGLTAG---D 263 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAI 314 LR LQG +EV G H A N L L + +L D + Sbjct: 264 LRG------------HLQGDMLEVEGQCFPLPLPGQHNALNYLAALAVAKLLGLDWKPLL 311 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 + L V P EGR K +R + L+DE+YNA P SM+AA+ +L+Q RR+AV Sbjct: 312 QGLQVNLP-EGRAKSHRLGED---VVLLDETYNAGPESMEAALRLLAQTPGK---RRLAV 364 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSET 429 LG M E+G+ + H + + + N+ + + G ++ LP ++E Sbjct: 365 LGPMRELGDYALELHYQIGQKVRELNLDGLLVLDMGEEGTALVKGAAPLPSQQFATHTEL 424 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ ++Q S+ GD ++ K+S+S G R++N L Sbjct: 425 VN----YLQDSIQPGDRLLFKASHSVGLDRVVNSL 455 >gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q VNG+ D+R + P + F + G H DGHDFI +A++ GA + +D + ++I Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAIKGGAVATLWASDHTDRL-PVAI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140 P VDD L A KL+ + +IA+TGS GKTTTK+M+ LS ++ KTY Sbjct: 83 PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 ++NN IGVP T+ +M + DF + E+GM G++ FL+ LV P +A+IT I AH+ F Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++IA AK EI GL+ G + D+ LL ++ + + +FG+S D Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K + EV L +V +G + N L + + + I+ LS F Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + N+G L D YN+NP + + ++ SQ GRRI VLGDM E Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435 +G+ S H LA + I+ V+L G + AL + L P ++H + ++ +D L Sbjct: 370 LGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + D V++K+S+ ++ L Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458 >gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] Length = 430 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 194/382 (50%), Gaps = 23/382 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R+I FFA+KG +++G++F A+++GA VVV+ I V Sbjct: 15 GVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKEHYILV--- 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +VL +L KLA+ R I+AITGS GKTTTKE++ L KT A G+ NNHIG Sbjct: 72 QNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M +FGI E+G +H EI FL + P IT AHL F +E + Sbjct: 132 VPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYITNFGKAHLEGFGSLEGVVK 191 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E+++ L E+ IFLN DD + +H +SFG+S AD QL S Sbjct: 192 AKTELYKNLQERHKLIFLNIDDEVQRKHENYNHT------FSFGESNEADVQL------S 239 Query: 268 EQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 QS + QL + + G + A+NM L I + ALS + P R Sbjct: 240 YQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKFEEIQTALSNYSPDNNR 299 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + A N T+I ++YNANP SM AA+ Q+ + + +IA+LGDM E+G + Sbjct: 300 SQTLNTASN----TIIMDAYNANPTSMHAALENFKQLKTNKQ--KIAILGDMFELGSSAV 353 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 + H +A + + + +L G Sbjct: 354 TEHQIIANYVQNSDFAETYLLG 375 >gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudoalteromonas atlantica T6c] gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 471 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 139/425 (32%), Positives = 206/425 (48%), Gaps = 27/425 (6%) Query: 12 QAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 Q +QG I I + G+S D+R I + F A+ GP++DGH FI A GA Sbjct: 11 QQVQGEIIRSENSIAEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQTSGAIA 70 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 VVV+ + + + V D AL L A + +AITGS GKTT KEM+ Sbjct: 71 VVVSRQVETPLAQIL-----VSDTKAALGLLGQAVKREVAPKTVAITGSSGKTTVKEMVA 125 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K A G++NN IGVPLTL R+ +F + ELG +HLGEI + T LV+P +A Sbjct: 126 AILSRRGKVLATKGNFNNDIGVPLTLLRLEAQHEFAVVELGANHLGEIAYTTELVKPDVA 185 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 I A AHL F + +A AK+EIF+GL K G N D F+ K L + Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQ-- 243 Query: 248 YSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 F AD+ + C++ ++ V GK + + G H N L++ + Sbjct: 244 -RFSTQGEADYYAQDVVLGLSGCAD--FLMVTPIGK-VSITLPLPGIHNVSNALVSAALA 299 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A++ L GR + + + G ++D++YNAN AS+ AAI +L Sbjct: 300 IEVGANLQDVQAGLQYMAQVSGRLQVKQLS---GQVKVLDDTYNANVASVNAAIDLLGSF 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR+I VLGDM E+GE ++ +H + E I ++ G + D +S + Sbjct: 357 A----GRKILVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSASDVYQKSGY 412 Query: 424 VHYSE 428 H+S+ Sbjct: 413 -HFSD 416 >gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q VNG+ D+R + P + F + G H DGHDFI +A++ GA + +D + ++I Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAIKGGAVATLWASDHTNRL-PVAI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140 P VDD L A KL+ + +IA+TGS GKTTTK+M+ LS ++ KTY Sbjct: 83 PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 ++NN IGVP T+ +M + DF + E+GM G++ FL+ LV P +A+IT I AH+ F Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++IA AK EI GL+ G + D+ LL ++ + + +FG+S D Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K + EV L +V +G + N L + + + I+ LS F Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + N+G L D YN+NP + + ++ SQ GRRI VLGDM E Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435 +G+ S H LA + I+ V+L G + AL + L P ++H + ++ +D L Sbjct: 370 LGDKSSQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + D V++K+S+ ++ L Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458 >gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 23/449 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q VNG+ D+R + P + F + G H DGHDFI +A++ GA + +D + ++I Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFIENAIKGGAVATLWASDHTDRL-PVAI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACI 140 P VDD L A KL+ + +IA+TGS GKTTTK+M+ LS ++ KTY Sbjct: 83 PALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVLSGEFNVTKTY--- 139 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 ++NN IGVP T+ +M + DF + E+GM G++ FL+ LV P +A+IT I AH+ F Sbjct: 140 DNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFF 199 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++IA AK EI GL+ G + D+ LL ++ + + +FG+S D Sbjct: 200 GTRDKIADAKMEITHGLKADGYFIYDGDEP---LLIERAKQVDFSKM-TFGRSHTDDVFA 255 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K + EV L +V +G + N L + + + I+ LS F Sbjct: 256 TKTSDGQYNTSFEVNLW-PDKKVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHF 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + N+G L D YN+NP + + ++ SQ GRRI VLGDM E Sbjct: 315 DLTKNRTEWLTG--NKGEKILSD-VYNSNPTAAREVLTAFSQTDVM--GRRIVVLGDMLE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFL 435 +G+ S H LA + I+ V+L G + AL + L P ++H + ++ +D L Sbjct: 370 LGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQADQLDQLSD 429 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + D V++K+S+ ++ L Sbjct: 430 DLKRDIQPNDEVMLKASHGIHLENIVEKL 458 >gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] Length = 455 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 182/367 (49%), Gaps = 22/367 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+SIDSRS+ E F A+ GP +DGHD++ KGA +V + + ++ +P Sbjct: 26 SGVSIDSRSVGAGELFVALAGPRFDGHDYLADVQAKGAVAALVERE----VANVDLPQLV 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL +L R ++AITGS GKTT KEML L + +A G+ NN + Sbjct: 82 VADSRLALGQLGALNRAGYDKPVVAITGSSGKTTVKEMLACILRTRGPVHATRGNLNNDL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL + + ELG S +GEIR+ L +P + +I AH+ F G E+I Sbjct: 142 GAPLTLLEIAPQHSAAVIELGASRIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIV 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQL----RK 262 AK EI EGL + GT LN DD F + KA++ A + SF +S ADF R Sbjct: 202 EAKGEILEGLGEGGTAILNLDDKAFAIWKARAAA---HKVISFARSDARADFHATDIGRD 258 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + C + G S+ V + +G H N L + + L+ P Sbjct: 259 ARGCPS---FTLHGAGASVAVQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLNAMQP 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +G R + +ID+SYNANP SM AAI +L+ S GR + VLGD+ E+G Sbjct: 316 VKG---RTVAQIAPSGVRVIDDSYNANPTSMCAAIDILAGFS----GRTVLVLGDIGELG 368 Query: 383 ELSQSFH 389 + ++ H Sbjct: 369 QWAEEGH 375 >gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] Length = 470 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 219/474 (46%), Gaps = 20/474 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L++ D+ +A G G V G+S DSR++ P E F ++G +DGHD++ A + Sbjct: 2 LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDR 61 Query: 64 GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V+ + + VDD L AL LA R R ++A+TGS GKTTT Sbjct: 62 GVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L G+ NN IG+P L R+ + + E+GMS GEI L + Sbjct: 122 KEMLAAILGQTGPGLKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + +IT PAHL +E +A AK E+F L G N DD + Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDPLIARCPSPD--- 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ + SFG NAD + + +L +S+ V G H N L Sbjct: 239 GVRRV-SFGL-HNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L +T + L F P +R+ G LID+SYNANPASM AA++ L Sbjct: 297 AAHVLGVPTETIARGLGEFSPY---ARRFNLE-EVGDVILIDDSYNANPASMAAALTTLR 352 Query: 362 QISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALP 419 +I GRR +AVLGDM E+GE ++ H L +L+ + ++ + G + AL Sbjct: 353 EIRA---GRRAVAVLGDMLELGEGAEEAHRQLG-LLAATCVDRLYVMGGMAGIVAAGALE 408 Query: 420 RSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + V + + D + ++ + GD ++VK S R+ + E F A Sbjct: 409 GGLADDAVTVATSHDAIVADLRRTTAAGDFILVKGSRGLAMDRVAEKMREVFVA 462 >gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] Length = 455 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 25/394 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PL + L A+ G IG G+SIDSRS+ + F A+ GP +DGHD++ Sbjct: 2 LKPL-SLSQLTTALSGRQIG--ADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + + + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----VADVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G E+I AK EI EGL + G LN DD F + A++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARA- 233 Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G + SF +S ADF R + C ++ G++++V + +G H N Sbjct: 234 --GSHKVVSFARSNPKADFHATDIGRDARGCPS---FKLHGAGETVDVQLNVLGEHNVSN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + ++ L+ P +GR + A N +ID+SYNANP+SM A Sbjct: 289 ALAAAAAAHAVGLSLNGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPSSMCA 345 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AI +L+ S GR + VLGD+ E+G+ ++ H Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375 >gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 475 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 225/464 (48%), Gaps = 33/464 (7%) Query: 23 PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V+G+S DSR + P FFA G DGH F+ A+ GA LVVV+ ++ + Sbjct: 26 PRTVVDGLSTTDSREVVPGSIFFAKPGETTDGHLFVPQALDSGAALVVVDREL-----DV 80 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137 + P V+D + AL +LA V AR+R+ I+ ITGS GKTTTK +L L T Sbjct: 81 AGPQLVVEDTVVALGELAADVIARVRALGNLRIVGITGSNGKTTTKNLLRAILEQSGPTI 140 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A S+NN +G P+T+ + + + E+ S +GEI L + RP I ++ + AH Sbjct: 141 APRASFNNEVGAPVTMLEVSERTQYLVAEMSASGIGEIARLVGMARPDIGIVLKVGLAHA 200 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F GIE+ +AK E+ L ++ LN DD + K+ A + FG A Sbjct: 201 GEFGGIEKTLAAKTEMVSDLLESDVAVLNLDDPRVASMADKTAA----HVLWFGLDDRAA 256 Query: 258 FQLRKWKQCSEQSWMEVQLQG------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + S + ++L G S V H +G H N L L +D Sbjct: 257 VRASDIRSTSRGTSFVLRLPGADGGDAASRPVRFHVLGEHHVMNALAAAAAAHTLGIGID 316 Query: 312 TAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + L R +R+R + G T+I+++YNA+P SM AA+ L+QI+ GE Sbjct: 317 RIVGGLEAVQ----RAERWRMEVLGGAGGVTVINDAYNASPDSMSAALKTLAQIAGPGE- 371 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV 424 R IAVLG+M E+GE S H + + I + + G H+ A+ + + Sbjct: 372 RTIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLVVVGPPARRMHITAINEGSWDGESL 431 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ E+ D + ++ +L GD V+VKSSNS G L + L E F Sbjct: 432 YF-ESQDAAYDHLKETLRAGDTVLVKSSNSAGLRFLGDRLGELF 474 >gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 238/472 (50%), Gaps = 29/472 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T ++L A +G + V+GIS DSR+I P + F +KG ++G FI A+ Sbjct: 2 ILTVKEILDATEGKLLSGDINICVSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNV 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G+ + +T+ + P+ V+D AL+++A R + IA+TGS GKTTTK Sbjct: 62 GSASLTESTNCIRHDNK---PIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS IG++NN IG+PLTL + D D + E+GMS GEIR L ++ Sbjct: 119 DMIYDVLSMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKNIAS 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHAL 242 P++AV T I AH+ E I AK+E+ E + T+ +N DD ++L+ K Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEKK---- 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G K + ++G + N D + + E S +V + G ++V + G H N L + I Sbjct: 235 GPKFV-TYGIN-NGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICI 292 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + KAL+ F P R ++ +I++ YNANP+SMKAA+SVL Sbjct: 293 GIQFDVNKEDIRKALAKFQPSAMR----LNIIDVAGIKIINDVYNANPSSMKAALSVL-- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRS 421 + E R++AVLG+M E+G+ H ++ E + +I + G + L + D A+ + Sbjct: 347 -GGYTERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYALKIADGAIEKG 405 Query: 422 IH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + +E +D I++ + + D+ +VK S ++ L E Sbjct: 406 MNNDNVFRCANNAEAID----VIKNIMKESDIFLVKGSRGMEMEEIVKFLQE 453 >gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] Length = 447 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 144/443 (32%), Positives = 218/443 (49%), Gaps = 23/443 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VNG + D+R I P + + G DGHD+I A KGA + N I S V Sbjct: 23 VNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAAATLTNR----PIEDDSHNVI 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D + AL LA R+ S A +I ITGS GKT+TK+M+ +S T G++NN+ Sbjct: 78 LVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMIASVISQQYTTLKTQGNFNNN 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R + + + E+GM+HL EI +LT + P IA IT I AH+ E I Sbjct: 138 IGLPLTILRYNGE-EVMVIEMGMNHLEEIDYLTKIALPDIAAITNIGTAHIGELGSRENI 196 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EI G+ GT+ +N D+ + H GI ++ + G +AD + Sbjct: 197 LQAKMEIVHGMNH-GTLVVNNDNDLLSTV----HPEGI-SLKTIGIESDADLKATDIILN 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S V++ G+ V + G H N L+ + I +L ++ I+ + F + R Sbjct: 251 EDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQIGLLLDIPMEKCIRGIETFELTKNR 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +ID +YNAN SMK++I VLS + R+IAVLGDM E+G+ + Sbjct: 311 NDILTL---DRHIRVIDGTYNANLDSMKSSIDVLSGYTD----RKIAVLGDMLELGDYEE 363 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVD 443 + H + L NI + G + D + ++ I H+ + L ++Q L + Sbjct: 364 TLHRAVGAHLLKKNIDLILTVGPAARYISDEVNKAKPGIAYHFDDNA-SLSAYLQECLEE 422 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 DVV+VK+SN +IN L E Sbjct: 423 NDVVLVKASNGMHLKEVINDLKE 445 >gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 461 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/444 (32%), Positives = 216/444 (48%), Gaps = 25/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN SI + IP F Sbjct: 36 ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----SIDGVHIPQF 91 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V L AL K+A A R IIA+TGS GKTT KEM+ L + ++A G+ NNH Sbjct: 92 VVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 149 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I+ + Sbjct: 150 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 209 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 A +K EI +GL TG +N DD+ F++ L A K I F AD + Sbjct: 210 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 263 Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++ + L +E+ G H +N L + + + L+ F Sbjct: 264 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 323 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +G R Q T+ID++YNAN S+ A+ VLS P GR+I V GDM E+G Sbjct: 324 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RP---GRKIFVFGDMGELG 376 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A H+ + + L +++ L Sbjct: 377 EWTTQHHREVGVAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 434 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 435 PDTTVLVKGSRSSAMENVVHRLVQ 458 >gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 452 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S PV Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNTLV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L D V+VK S ++N L+ Sbjct: 424 TNDLKAHDCVLVKGSRGMKLEEVVNALI 451 >gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] Length = 452 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 221/449 (49%), Gaps = 33/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPV 85 +NG++IDSRSI+ F KG + DGH F+ A+Q GAG SI ++S P+ Sbjct: 26 INGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKG--TSIDENVSGPI 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 84 IWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E Sbjct: 144 EIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQL 260 IA AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 204 IAKAKSEITIGLKDNGTFIYDGDEPLLKPHVNEVENAKCISIGVAT----------DNAL 253 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + + + K H+ +G H +N + + + L +T + L Sbjct: 254 VCSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNL 309 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD Sbjct: 310 KNVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGD 362 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLF 436 + E+GE S+ HI + L +I ++ G + ++ + + + + D + Sbjct: 363 VLELGENSKEMHISVGNYLEEKHIDVLYTFGNEAKYIYESGQQHVEKAQHFNSKDDMIEV 422 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S L D V+VK S ++N L+ Sbjct: 423 LTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 515 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 213/452 (47%), Gaps = 34/452 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + P + A G H DGH FI A++ GA L++ ++ + G P V Sbjct: 32 ICTDSREVQPGSVYVAKPGEHSDGHTFIEAAIEAGAILIIAEREIADAQGQ-PFPAIIVA 90 Query: 90 DVLGALNKLAVAA----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D + A+ +A R + T++ ITGS GKTTTK++L L + T A IGSYN Sbjct: 91 DAVQAMGDIAAEVVQLIRANGEVTVLGITGSAGKTTTKDLLAGILRQLGPTVAPIGSYNG 150 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +GVPLT+ + + F + E+G + +G I +L LV+P I V+ I AH F G+E Sbjct: 151 EVGVPLTVFQADLTTRFLVIEMGATRIGHIEYLAGLVKPDIGVVLGIGSAHAGEFGGVEN 210 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----KNADFQL 260 IA AK E+ E L TGT LN D + +++ + + FG+ + L Sbjct: 211 IAQAKGELVEALSPTGTAVLNLGDGRVSAMASRT----VAPVLWFGEEGLRIPEGQTSVL 266 Query: 261 RKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 Q + L+ G S + IG H N+L AD +T + L Sbjct: 267 AGNVQVGSNATPSFDLRFPDGSSWPIRSGLIGIHHVNNLLAAAAAAWAAGADGETIARGL 326 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG---------E 368 PK R + R G T+I+++YNANP SM+AA+ VL+++ G + Sbjct: 327 DGQGPKS-RWRMERSERADG-VTVINDAYNANPDSMRAALRVLAELGRGGADENGKILPQ 384 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH 423 R AVLG M ++G S H L +V+ NIS + + G H+ A+ + Sbjct: 385 RRTWAVLGPMFQLGAESIREHNALGQVVVRLNISRLLVIGAEARALHIGAINEGSWGEES 444 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 VH + +D + +Q L GD+V+ KS + Sbjct: 445 VHVPD-LDSAYALLQEELKPGDIVLFKSGHDA 475 >gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 460 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 143/473 (30%), Positives = 230/473 (48%), Gaps = 25/473 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++F+++ +A + G +SIDSR+I + F A+KG +DGHDF+++A +KG Sbjct: 4 FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ S VF V D A LA R+R ++A+TGS GKTTTK+ Sbjct: 64 ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+++ LSS + + NN IG+ LTL + + D + E+GM G+I L ++ +P Sbjct: 124 MISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSH 240 I VIT + +H+ E IA AK E+ + L + G LN DDSF E K + Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKGRVI 243 Query: 241 ALGIKTIYS-FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G+ Y+ +G K +F + C ++++ +V L+ +G H + L Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAF-KVNLK---------LLGIHNVYDALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 IL DV + LS F P+ GR + + +ID++YNANP SM+ A+ Sbjct: 294 ATSTARILGVDVTKIQRVLSDFSPRAGR----QSLIEINGIKIIDDAYNANPLSMEMALR 349 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA 417 L QIS + VL DM E+G+ + FH ++ + + + + K A Sbjct: 350 SLKQISAK---NKYLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGA 406 Query: 418 LPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + + YS +T I + GDV ++K S+S Y + +LL EE Sbjct: 407 KEKGMKMIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459 >gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 461 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 141/442 (31%), Positives = 216/442 (48%), Gaps = 18/442 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR +A F + G DGH FI+ A +GA + + + +S+ P+ Sbjct: 26 INTIEFDSRQLASGSLFIPLGG-KTDGHQFIMDARSQGAKAALWSKE--SSLAPEGFPIL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ LA+ + +IA+TGS GKTTTK+M+ L+ TY G+YNN Sbjct: 83 EVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKDMIAAVLAKKYITYKTQGNYNNQ 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP + + + E+GM H EI FL+ L P +A IT I AH+ N +EI Sbjct: 143 IGLPYTILHMPEETEMLVLEMGMDHADEIDFLSQLASPTVAAITMIGEAHIENLGSRQEI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK I +GL + G + + ++ + L A S +TI +FG + ADF + Q Sbjct: 203 AKAKMGITKGLVEDGLLIIPENEPLLKPLTANS----TQTIKTFGFTNEADF--VECVQL 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E++ +L G + G + N + L I + L+ H + R Sbjct: 257 EEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N G L D YNANP ++ + Q+ + GRRI VLGDM E+G S+ Sbjct: 317 TEWVTA--NNGVEILSD-VYNANPTAVSLVLDSFGQMFTN--GRRIVVLGDMLELGATSK 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDG--LFLFIQSSLV 442 H L++ L I V+L G + L L ++ HVHY M+ L ++++++L Sbjct: 372 MMHQQLSKHLFPAIIQEVFLYGTEMKNLFLILEKTYGNHVHYYPKMEKEHLIVYLKATLQ 431 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D+++VK SN +I L Sbjct: 432 PNDLLLVKGSNGMRLTEVIEAL 453 >gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 438 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S PV Sbjct: 12 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 70 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 71 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 130 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 131 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 190 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 191 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 240 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 241 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 296 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 297 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 349 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 350 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 409 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D ++VK S ++N L+ Sbjct: 410 TSDLKAHDRILVKGSRGMKLEEVVNALI 437 >gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 460 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 205/392 (52%), Gaps = 28/392 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L QA++G IG ++ +S D+R+IA Q F A+KG +D HDF A GA Sbjct: 5 SLASLAQAVEGQLIG--SDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATI--IAITGSVGKTT 121 ++V+ + + +P V D AL L + A+L + + +A+TGS GKTT Sbjct: 63 VALLVSRHL-----PVELPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KEM L++ K A G++NN IG PLTL R+ + + + ELG +HLGEI + T+L Sbjct: 118 VKEMCAAILATKGKVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHLGEISYTTNL 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+P +A+I +A AHL F ++ +A AK EIFEGL K T +N + EL + Sbjct: 178 VKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASNDRELW---APL 234 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMT 299 L K + +F + ADF + S+ + +L V H +G H N L Sbjct: 235 LADKNVITFSSEEQADFFASDIELDSD-GYPHFELHSPQGSVAIHLSQLGLHNVSNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--IDESYNANPASMKAAI 357 + S+L A + + L +G R A++Q L ID++YNA+ AS+KAAI Sbjct: 294 AALTSVLGATLAEIKQGLETATNVKG-----RVAVSQPMVGLRVIDDTYNASVASVKAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +L+ +G+R +LGDM E+GE S++ H Sbjct: 349 DLLASY----QGQRWFILGDMAELGEESENLH 376 >gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] Length = 452 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S PV Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D ++VK S ++N L+ Sbjct: 424 TSDLKAHDRILVKGSRGMKLEEVVNALI 451 >gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 452 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 144/445 (32%), Positives = 216/445 (48%), Gaps = 25/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 + G++IDSR+I F KG + DGH F+ A++ GAG D+ ++ P Sbjct: 26 IKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDIDDNVKG---P 82 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA A +I +TGS GKTTTK+M+ L + K G+YN Sbjct: 83 IIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLT+ + +D + I E+GMS EI L+++ P IAVIT I +H+ + E Sbjct: 143 NEIGLPLTILELDLDTEISILEMGMSGFHEIELLSNIAEPDIAVITNIGESHMQDLGSRE 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+EI GL+K GT + D+ E H IK D L Sbjct: 203 GIAKAKSEITIGLKKEGTFIYDGDEPLLE-----PHVKKIKHAKCLSVGLKQDNALVCEV 257 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + SE + + G H+ +G H +N + + I L +T ++ Sbjct: 258 EHSENDGIAFSINGNE----HYKLPILGIHNMKNAAIAIAIGHELGLKYETIQHNINHVQ 313 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R +R+ + T+I+++YNA+P SMKAAI LSQ+ EGR+I VL D E+ Sbjct: 314 LTGMRMERH---ITDDDITIINDAYNASPTSMKAAIDTLSQM----EGRKIIVLADSLEL 366 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSS 440 GE S+S H ++ L NI + G + D + + HV Y L ++ ++ Sbjct: 367 GENSRSMHEEVGAYLEGKNIHTLLTYGKDAKYISDIGGQFVDHVEYFIDKQQLTQYLINN 426 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 LV D V+VK S ++N L+ Sbjct: 427 LVANDKVLVKGSRGNKLEEVVNKLI 451 >gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] Length = 460 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 230/469 (49%), Gaps = 29/469 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA V Sbjct: 7 EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 66 Query: 69 VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D V + S+ V V++ L AL+K+A R + IA+TGS GKTTTK+M+ Sbjct: 67 ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 126 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GM+ GEIR L ++ P +A Sbjct: 127 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVA 186 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243 V T I AH+ E I AK E+ E ++ I LN DD + +K + G Sbjct: 187 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 246 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLG 301 IK+ G+ K D + E+ ++ L+ K++ E+ G H N L + Sbjct: 247 IKS----GEIKACDIE-------KEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAIC 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +V+ +AL F P GK + G +ID+ YNANP SMKAA+SVL Sbjct: 296 VGLEFGINVEDMAEALKDFQP----GKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 + R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 352 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + ++ + +GD ++VK S +++ L E Sbjct: 409 GMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 457 >gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Oceanobacillus iheyensis HTE831] gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15) [Oceanobacillus iheyensis HTE831] Length = 455 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 133/468 (28%), Positives = 233/468 (49%), Gaps = 23/468 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+T L + H I + ++ D+R + + I G +DGH+FI A++ Sbjct: 2 LFTVQWLAELFPKHQGKISTDITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKN 61 Query: 64 GAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + + + S S PVF V+D + A+ +LA + T++ +TGS GKTTT Sbjct: 62 GAIATLWDKSIPLPSEWDNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T + + KT A G+ NNHIG+PLT+ M D + + E+GMS GEI L+ + Sbjct: 122 KDLITSVVKTSYKTTATQGNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P VIT I +H+ N + IA AK EI EG++ G +F++ D+ LL ++ + Sbjct: 182 EPDYTVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNGNLFIDDDEP---LLAKENIDM 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I G +K +D + K +++ EV + + + +G H A+N + I Sbjct: 239 DDSQIIGIGFTKESDINISNVKVHPDRTTFEVTDKPYHVNL----LGEHHAKNAAFAISI 294 Query: 303 ---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++I ++ A L V G R+ +I+++YNA+ SMKA+I V Sbjct: 295 GKALNISHENIQLAFNKLEV------TGMRFELETGINGVHIINDAYNASATSMKASIQV 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + ++ G ++ VLGD+ E+G S+ +H +AEV+ IS ++ G + D + Sbjct: 349 VKEM--EGFQNKVLVLGDILELGTYSEHYHRSIAEVID-SRISEIYTYGEQAFYIYDEIT 405 Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++VHY + + + ++ L + +++ K+S F I L Sbjct: 406 KQHPKVNVHYIKQREDVVPSLKEHLNNQTLILFKASRGMKFEMFIKEL 453 >gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 452 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 230/469 (49%), Gaps = 29/469 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA V Sbjct: 8 EIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAV 67 Query: 69 VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D V + S+ V V++ L AL+K+A R + IA+TGS GKTTTK+M+ Sbjct: 68 ITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GM+ GEIR L ++ P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243 V T I AH+ E I AK E+ E ++ I LN DD + +K + G Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLG 301 IK+ G+ K D + E+ ++ L+ K++ E+ G H N L + Sbjct: 248 IKS----GEIKACDIE-------KEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAIC 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +V+ +AL F P GK + G +ID+ YNANP SMKAA+SVL Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 + R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + ++ + +GD ++VK S +++ L E Sbjct: 410 GMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458 >gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] Length = 447 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 208/438 (47%), Gaps = 35/438 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88 IS DSR I P FFA++G +DG+ F A++KGA VV+ + + + + V Sbjct: 42 ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADRLIVV 101 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L L LA R I+AITGS GKTTTKE+++ L+ + YA G+ NNHIG Sbjct: 102 DDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNNHIG 161 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M DV+FGI E+G S GEI L + P+ ++T I AHL F G E + Sbjct: 162 VPLTLLAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNIGRAHLEGFGGPEGVRR 221 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L +T G +F+ +D + A+ L +C Sbjct: 222 GKGELYDWLARTGGRVFVPANDPVLMSMAAERETLA--------------------AECY 261 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + V HH G + N+ + + D + A+ + P R Sbjct: 262 PTTLAD--------GVEHHLEGDYNRFNVAAAVAVGRYFGVDDERIRYAVGSYRPDNHRS 313 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 ++ R N TLI + YNANP+SM+A++ Q G R+I +LGDM E+G+ S + Sbjct: 314 QKIRTGQN----TLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILGDMLELGDWSDA 369 Query: 388 FHIDLAEVLSLYNISHVWLSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + + + + L G H A + R + + L ++ V + Sbjct: 370 EHRHIISLAAEIPDARILLVGPHFAKAYRSLESRPADTTLYPSQEVLAAELRKHPVSQAL 429 Query: 447 VVVKSSNSCGFYRLINLL 464 ++VK S+S G RL +LL Sbjct: 430 ILVKGSHSIGLERLADLL 447 >gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] Length = 462 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 154/455 (33%), Positives = 224/455 (49%), Gaps = 51/455 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVV---VNTDMVASIGSLSIPV 85 I+ D+R++ E F A+KGP++DGH FI A QKGA G++V V+TD I Sbjct: 27 INTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQKGAIGVIVDHAVDTD---------IAQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 F V D AL + A + IAITGSVGKTT KEM LSS A G++NN Sbjct: 78 FVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSSKGDVLATKGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ F + ELG +H+GEI + T + +P +AV+ +A AHL F ++ Sbjct: 138 DIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLQG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------- 258 +A AK EI++GL++ G +N D F + K L + I F S+ D Sbjct: 198 VAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDK---LATRNIKCFSSSEKLDIWAEDISL 254 Query: 259 --QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 Q R + C++Q + V+L G H N L+ + S ++ Sbjct: 255 DAQARASFTLCTKQHSVPVKLALP---------GKHNISNALIAAALTSEFDVSLEDIAS 305 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 AL+ +GR + + T+ID++YNAN S+KAAI +LS I +G RI L Sbjct: 306 ALATMGEVKGRVNLIEASDS---LTIIDDTYNANVKSVKAAIDLLSDI----QGHRILAL 358 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGL 433 GDM E+GE ++ +H ++ E I ++ G D LP H+S + + Sbjct: 359 GDMGELGEDARKYHQEVGEYALAQGIDELFTLGVLSKCASDVFGLPNR---HFS-NREQM 414 Query: 434 FLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLL 465 IQ+S+ D +VVK S S L+ L+ Sbjct: 415 LQQIQNSISKVDKKITLVVKGSRSSRMELLVTDLV 449 >gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida BIRD-1] Length = 455 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 195/394 (49%), Gaps = 25/394 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PL + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 2 LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + + + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----VAGVDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARA- 233 Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G + SF + ADF R + C + G+++ V + +G H N Sbjct: 234 --GAHKVVSFARGNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L+ P +GR + A N +ID+SYNANP SM A Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AI +L+ S GR + VLGD+ E+G+ ++ H Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375 >gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] Length = 447 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 138/438 (31%), Positives = 217/438 (49%), Gaps = 24/438 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GIS D+R I P FFA+KG +++G+ F A++ GA V++ + L Sbjct: 32 DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEY----HLKDKTIL 87 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+DVL L LA A R ++A+TGS GKTTTKE++ LS KT A G+ NNHI Sbjct: 88 VEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGNLNNHI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + + GI E+G +H+GEI LT + P IT AHL F ++ + Sbjct: 148 GVPLTLLSMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYITNFGKAHLEGFGSVQGVI 207 Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+E+++ L GT+FLN DD ++ LG + F + D + Sbjct: 208 KGKSELYDYLIAHKGTLFLNLDDPI------QAEKLGSTHTFCFSAHQETDLNIVYH--- 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + Q + Q + V + +G + N+ I + + +AL + PK R Sbjct: 259 TAQPFANFQFD--EITVNSNLMGQYNTINLAAAAAIGTFFKISAEDIKEALEAYVPKNNR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + +N G T+I ++YNANP SM+AA+ + + +G +IA LGDM E+GE S Sbjct: 317 SQ----IINNGDQTIILDAYNANPTSMEAALRNFAGLER--QGPKIAFLGDMFELGETSA 370 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H +A + + +I H+ L G H + V+ + + L + +Q +L D Sbjct: 371 YEHQFIANLAAQLDIDHLILLGSHFEKTNTTAFKFTDVNQLKEQN-LPVSLQKALADA-T 428 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S L++L+ Sbjct: 429 ILIKGSRGMKLETLLDLV 446 >gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS] gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS] Length = 851 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 10/382 (2%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P V V AL LA+A R I+A+TGS GKT+T M+ L + Sbjct: 56 VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKN 115 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSN 199 +N GV +A + + + E+ S L G R +++RP +A+IT+I AHL Sbjct: 116 FNTFDGVNGEVANL-TNEAIAVIEVAASFLSQRGGPR--PNVLRPEVAMITSIGEAHLEY 172 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + +A K+ +F+ L GT + D ++ + ++ A G T+ SFG +AD Sbjct: 173 FGSPQGVAEVKSNVFD-LMSRGTAVIPRDADTYDYMVQRARAAGATTV-SFGAHPSADAH 230 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 L + + +E ++ G+ + +G H A+N + LG+V+ L D A AL+ Sbjct: 231 LLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGALGVVAALGLDWRRAAGALAS 288 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GRG + G FTLID++YNANP+S++AAI +LS+ + GRRIAVL DM Sbjct: 289 SREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGRRIAVLADML 348 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G S+ FH LAE L I V+L G + AL D LP I Y T+DGL + Sbjct: 349 ELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTVDGLQAALDR 408 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 DGDVV+ K SN ++++ Sbjct: 409 EFADGDVVLFKGSNGTELHKVV 430 >gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O11] Length = 452 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 ++D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] Length = 461 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 226/474 (47%), Gaps = 35/474 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++++A +G+ V I IDSR AF AI G + D H +I A G Sbjct: 5 TVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGC 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +VN I S + + VDD AL + + + I ITGSVGKTTT++M Sbjct: 65 RVFIVNKGKDIDIKS-DMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + ALSS + T ++NNH GVPLTL + + + E+GMS GEI +L ++V P Sbjct: 124 VYAALSSERATLKNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEIEYLANMVNPK 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVI+ I +H+ N E I AK EI G K T+ +N DD F L+ + Sbjct: 184 VAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTLRDAERDYDLI 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T FG KN D + + E + G ++ +G H N + + + ++ Sbjct: 244 T---FGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAAIAVGTV 300 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ + LS F E G R + G +T+I+++YNA+P SM+A++S+L + Sbjct: 301 EGISMEGIKRGLSNF---EATGMR-QDIRKIGEYTVINDTYNASPDSMEASLSILGRY-- 354 Query: 366 HGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWL------SGFHVL 412 EGRRIAVLGDM EMG+L++ H +D ++V+ S V++ +GF V Sbjct: 355 --EGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNSDVIITVGESAVFINKEAEENGFDV- 411 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S H E L I S GD ++ K+S F + + + E Sbjct: 412 ------KNSYHFDNLEDAKKLLGEIMQS---GDTMLFKASRGMKFEKFVEYVKE 456 >gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] Length = 462 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 235/472 (49%), Gaps = 29/472 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++++ G +G + G+S DSR+I E F + GP++DGHDFI A +KGA Sbjct: 5 TIKEVIKYTSGEYLGNQFNIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 ++ + + + + +L I + VD+ AL L+ R +AITGSVGKTTTKE Sbjct: 65 AAILCDKNKRSKVDNLPIKNIIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGKTTTKE 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L+ K G+ NN IG+PLT+ R+ G+ ELGMS LGEI + +VRP Sbjct: 125 MTAEILNMRFKVLKTSGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMASVVRP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I AH+ + IA AK EI E L + LN D EL A+ + Sbjct: 185 KIAVITNIGIAHIEKLGSKQNIARAKMEILEPLGENDLAVLNGDCQ--ELWDARKTIVP- 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLGI 302 KT++ FG+ + D + R K S + +E + G E+ + G H N L + + Sbjct: 242 KTVF-FGQER-GDIKARNIKSNS-TNELEFDIYGCYGEMTFKALLPGIHNVNNALAAIAV 298 Query: 303 ---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAI 357 + + ++ L + R + +F +ID++YNANP SMK+A+ Sbjct: 299 GFEMGLTKEEIQQGFLNLKL--------PEMRLQFKKSYFGADIIDDAYNANPDSMKSAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSLYNISHVWLSGFHVLA 413 L Q S +G+ +R +LGDM E+G+LS+ H ++ AE ++ + F A Sbjct: 351 DFLQQYS-YGK-KRAVILGDMLELGDLSEKAHFEIGKYAAERADIFIAVGNYAQSFKKGA 408 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L+ L S ++H T+ I+ + D D++++K+S ++ L+ Sbjct: 409 LQGHLD-SRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRGMKMEQITQTLV 459 >gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor owensensis OL] gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor owensensis OL] Length = 448 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 228/470 (48%), Gaps = 31/470 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW ++ +A+ G V+ S++S++++ F +KG +DGHDF+ A+Q Sbjct: 3 LW-LSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 GA + + ++ +P V D L AL LA R + K T+I +TGSVGKT+T Sbjct: 62 GAISFISQKEF----KNVRVPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + L+ KT+ G++NNHIG+P ++ MP D +FE+GMS+ GEI L+ + Sbjct: 118 KEYIFNVLNYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKLSQIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT I AH+ N I AK+EI +G+ G + +N D+ L K + Sbjct: 178 KPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMADDGMLIINNDNDILNLHKGELK-- 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K I + G + F+ + ++ EV +E +H N L + + Sbjct: 236 --KRIITIGIENESHFRAKNVQRHQNGFSFEVDNYTYFIE----SFNFHDIYNSLFAIAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 IL D +A+ ++ R KR + +G T+ID++YNA+ SM +AI + + Sbjct: 290 GIILGIDRQLIKEAIR----RKERLKRRFEIIQKGSITVIDDTYNASTHSMLSAIDSICE 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDA 417 +G++I VLGDM E+GE S+ H + + I V +G F++ A K Sbjct: 346 F----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAKKKE 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 R+ V E +D L + + ++ K+S +++ L+E Sbjct: 402 GSRAYFVSKDECLDVL----EREVTSNSTILFKASRGIKLDEIVDEFLKE 447 >gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] Length = 450 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 145/440 (32%), Positives = 224/440 (50%), Gaps = 28/440 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR+I + F A+KG ++DG+ F A++ GA V+V+ V + P V D Sbjct: 28 DSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDASVQAE-----PRIVVADTR 82 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNNHIG 148 AL +LA R + ++A+TGS GKTTTKEML+ LS + A + G+ NN IG Sbjct: 83 LALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAILSVVAGAKASVHATYGNLNNDIG 142 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL +M + + E+GM+HLGEI +LTH+ +P +A+I AH+ E IA Sbjct: 143 VPLTLLKMQPAHQYAVVEMGMNHLGEIDYLTHIAQPDVALINNAGIAHIGELGSRENIAK 202 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF GL+ G +N D + K+ H + I +FG AD R + Sbjct: 203 AKGEIFAGLKSDGVAVINADSDYAYYWKSLNPH----RKIVTFGLKNPADVSARYQEN-- 256 Query: 268 EQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + V L S EV V + G H N L L ++ + L+ F G Sbjct: 257 -DGYASVVLATASDEVSVQLNVQGEHNISNALAAGATAYALGVSLNDIGRGLASFTGVYG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R + +N +ID++YNANP SMKAAI+VL++++ G++I VLGDM E+G + Sbjct: 316 RLER-KAGINGA--VVIDDTYNANPDSMKAAINVLAKLA----GKKILVLGDMGELGADA 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 +S H ++ ++ ++ G L+++ A + + + + + +L G Sbjct: 369 KSMHAEVGAYAKAAGLTTLYCLGN--LSVETARSFGAGAEHFSSPEAIAQAVLPALAQGT 426 Query: 446 VVVVKSSNSCGFYRLINLLL 465 V+VK S R++NLL+ Sbjct: 427 TVLVKGSRFMQMERVVNLLV 446 >gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 151/485 (31%), Positives = 231/485 (47%), Gaps = 44/485 (9%) Query: 6 TFHDLLQAIQGHSI---GIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++ +A+ G + Q V+G+ DSR I P F A G DGH F AV Sbjct: 20 TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLFAPWAV 79 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSV 117 + GA L++V ++ L +P V DV+ AL +LA V AR+R+ + ++A+TGS Sbjct: 80 EAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVAVTGSN 134 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK +L L + +T + + S+NN +G PLT+ ++ F + E+G S LGEI Sbjct: 135 GKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGLGEITR 194 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P + ++ T+ AH F GIE K E+ + L T LN DD + Sbjct: 195 LIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRVASMSD 254 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNM 296 K+ A + FG+ A + + + + L G + V +G H N Sbjct: 255 KTQA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSTRPVSFRVLGEHHVTNA 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKA 355 L L D D + AL R +R+R L T+I+++YNA+P SM A Sbjct: 311 LAAAAGAWALGVDGDAIVSALQTVQ----RAERWRMEVLGGNGVTVINDAYNASPDSMAA 366 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ L+QI E R +AVLG+M E+GE S+ H + + NI + + G Sbjct: 367 ALRTLAQIRGP-EQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA---- 421 Query: 416 DALPRSIHVHY--SETMDGLFLFIQSS----------LVDGDVVVVKSSNSCGFYRLINL 463 R +H+ + DG +F + + L DGD+V+VKSSNS G L + Sbjct: 422 ----RRLHLEAIGQGSWDGESIFAEDAAEAREILDGILRDGDLVLVKSSNSAGLRFLGDE 477 Query: 464 LLEEF 468 L E++ Sbjct: 478 LGEKY 482 >gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] Length = 470 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 235/464 (50%), Gaps = 44/464 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84 V I+ D+R+I+ E F AI G DG+ F A+ GA + V+ D A+ + + P Sbjct: 25 LVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGA-VAVLTADPAAACATGAAPE 83 Query: 85 -VFGVDDVLGALNKLA-VAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 V VDD + AL +LA A + K +I +TGSVGKTTTK++L L Sbjct: 84 RVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDLLAHLLGQRGPII 143 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A GS+NN +G+PLT+ R + E+G H+G + +LT +V P ++V+ +A AHL Sbjct: 144 APPGSFNNELGMPLTVLRADESTSTLVLEMGADHIGNLAYLTGIVAPDVSVVLAVARAHL 203 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--SFGKSKN 255 F GIE +A AK+E+ EG + G + LNYDD E ++ + K +Y + G ++ Sbjct: 204 GEFGGIENVARAKSELVEGTREGGVVVLNYDD---ERVRDMAKLAPGKVVYFSASGACRD 260 Query: 256 ----ADFQLRKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +D L K Q S +S +E++L G HH A + + GI Sbjct: 261 GVWASDVTLNKTGQASFILHYGQSESRVELKLIG-----AHHVANALAAATVALVCGI-- 313 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQI 363 ++D + L+ + G +R + + T+ID+SYNANP SMKA ++ L+ + Sbjct: 314 ----ELDDCARLLT----EANAGSPHRMDVWERNGTTIIDDSYNANPDSMKAGLTALAHL 365 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSI 422 H R+IAVLG M E+GE S++ H + E+++ I + G + + A + Sbjct: 366 GTH--RRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSPTILTARQGGV 423 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH + + + L +GDVV++K SN G +RL + L E Sbjct: 424 EVHETLNVAEATQLLTGLLAEGDVVLLKGSNGSGVWRLADALKE 467 >gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] Length = 460 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 35/456 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R+I + IKG ++GH F+ A++ GA + N D I V Sbjct: 27 IEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENGALATLWNKD--EENPPTDISVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA + R ++ ITGS GKTT K+M+ L + + G++NNH Sbjct: 85 LVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLDTTYRVLKTDGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ D + E+GMS GEI FL++L P +A+IT I +HL + + I Sbjct: 145 IGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL TG + N D+ LL ++ +T+ +FG S+ D Sbjct: 205 AEAKLEITSGLAPTGQLVYNGDEP---LLTSRVVNPVFETV-TFGSSEQNDLY------- 253 Query: 267 SEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S + + G + V +G H N L + + D +T K L Sbjct: 254 --PSAISAEELGTTFTVSRETTYPFFIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGL- 310 Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 KE + R L T I+++YNA+P S+KAAI+++ + G ++I VLG Sbjct: 311 ----KELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL--EGYKQKILVLG 364 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGL 433 DM E+G+ + FH ++ E + I +V G + ++ + V + E D L Sbjct: 365 DMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAEDKVMHFEEKDEL 424 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + DVV+VK+S +I+ ++ + P Sbjct: 425 VKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460 >gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] Length = 455 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 191/394 (48%), Gaps = 25/394 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + P+ + L+ + G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 2 LKPM-SLSQLVPLLNGQQIG--ADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + + + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----VADVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAAEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP + VI AH+ F G E+I AK EI EGL + G LN DD F KA++ Sbjct: 175 LTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFATWKARA- 233 Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G + SF +S ADF R + C ++ G+ +V + +G H N Sbjct: 234 --GAHKVISFARSDARADFHASAIGRDARGCPS---FQLHGAGEVAQVQLNVLGEHNVSN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L+ P +G R + +ID+SYNANP SM A Sbjct: 289 ALAAAAAAHAVGLSLAGIAAGLAAVQPVKG---RTVAQIAPSGVRVIDDSYNANPTSMCA 345 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AI +L+ S GR + VLGD+ E+G+ ++ H Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375 >gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] Length = 467 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 221/475 (46%), Gaps = 57/475 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T +++ +A G IG G + +S DSR +AP E F A++G +DGHDFI+ AV + Sbjct: 1 MFTLNEIAEATGGRMIG-EGAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQ 59 Query: 64 GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 G + + ++ G++ +P D L AL LA R R + +TGS Sbjct: 60 GITVFLAEESWAERHELPKGAGAVLVP-----DTLRALGDLAAYHRRRFNLKTVCVTGSN 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEML L+ G+ NN IG+PLT+ R+ + +FE+GMS GEI Sbjct: 115 GKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDR 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--- 234 L + P + +IT PAHL +E +A AK E+F L+ N DD Sbjct: 175 LAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSACPT 234 Query: 235 -LKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 L G++ +I S GK + F LR L +V Sbjct: 235 HLNVTRLTFGLRGAEVSSASIQSLGK-RGESFTLR--------------LPDGEQQVTLS 279 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L L + + L F P + KR++ G TLID+SY Sbjct: 280 AYGRHNIYNALAAAAAAHALGVSGEVIRQGLEEFSPYD---KRFQLEEVAG-VTLIDDSY 335 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPASM AA++ L ++ GEGR +AVLGDM E+G ++ H +L + L+ ++ + L Sbjct: 336 NANPASMAAALTTLKEL--QGEGRLVAVLGDMLELGLGTEEAHRELGK-LAAGSVDRLCL 392 Query: 407 SGFHV-----LALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 G + AL+ LP + V + + L F+Q GD ++ K S Sbjct: 393 LGKLIDETAKGALEAGLPETDLVLGRDHEQLAQELLTFVQP----GDCILFKGSR 443 >gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 29/469 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA + Sbjct: 8 EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAV 67 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + V + S+ V V++ L AL+K+A R + IA+TGS GKTTTK+M+ Sbjct: 68 ITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GMS GEIR L ++ P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLKNIAEPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALG 243 V T I AH+ E I AK E+ E ++ I LN DD + +K + G Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYRYG 247 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLG 301 IK+ G+ K D + + ++ L+ K++E + I G H N L + Sbjct: 248 IKS----GEIKACDIE-------KGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +V+ +AL F P GKR + G +ID+ YNANP SMKAA+SVL Sbjct: 297 VGLEFGINVEDMAEALKDFQP----GKRRLNIIEIGDIKIIDDVYNANPDSMKAALSVLR 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 + R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 353 DLPAK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVC 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 410 GMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQE 458 >gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] Length = 496 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 226/463 (48%), Gaps = 41/463 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 IVP V DSR + A G H DGHDF+ A ++GA LV+ ++ + G Sbjct: 23 IVPTSVVT----DSRESTHGSLYVAKPGEHADGHDFVDAAFERGAVLVLGEREVTDADGR 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALS 131 P V+D + A+ LA + R +A T+I ITGS GKTTTK++L LS Sbjct: 79 -PFPAVVVEDAVLAMGALAAESVRRIRAERASRGEDFTVIGITGSAGKTTTKDLLAGVLS 137 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + T A GSYN +GVPLT+ F + E+G + LG I++L +V+P I V+ Sbjct: 138 TAGATVAPQGSYNGEVGVPLTVFAADATTRFLVIEMGATGLGHIKYLAEMVKPDIGVVLV 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA--LGIKTIYS 249 + AH F G+E IA K E+ E L + GT +N DD ++A++ A LG ++ Sbjct: 198 VGTAHAGEFGGVENIAKTKGELVEALSEHGTAVINLDDGRVAAMRARTKAKVLG----FT 253 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNML---MTLGI 302 + + + R + Q + + L G ++EV IG H N+L Sbjct: 254 SSPATTEEVEARNV-VVNGQGFPDFDLVLPDGGPAVEVRSRLIGGHHVTNLLAAAAAAFA 312 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 I AD+ T++ + S R + R G T+I+++YNANP SM+AA+ L+ Sbjct: 313 AGIPAADIATSLSSQSAAS----RWRMERTERADG-VTIINDAYNANPESMRAALRSLAD 367 Query: 363 ISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G+GRR AVLG M E+GE S H + + NIS + + G AL + + Sbjct: 368 L---GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREARALYISAIQE 424 Query: 422 ----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 ++ET++ + +Q L GD+V+ KSSN G L Sbjct: 425 GSWGDECSFTETVEEAYELLQRELEPGDLVLFKSSNGVGLRHL 467 >gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] Length = 452 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L D V+VK S ++N L+ Sbjct: 424 TNDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] Length = 459 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 224/455 (49%), Gaps = 38/455 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR++ + F A+KG ++DGH+F AV GA ++V ++ I + I V Sbjct: 24 IDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGANALLVEREL--PIDAAQIVVA 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +G ++ R + T +A+TGS GKT+ KEM+ LS + G++NN Sbjct: 82 NSQRAMG---EIGAYVREQLAPTCVALTGSNGKTSVKEMIATILSQQHRVLYTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FG+FELG +H GEI + + LV+P +A++ +A AHL F +E + Sbjct: 139 IGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGLVKPSVAMVNNVASAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSH----ALGIKTIYS-----FGKSKNA 256 A AK+EIF + GT +N DD+F + +L+A SH G+K S F A Sbjct: 199 AKAKSEIFNHVTVGGTAVINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIA 258 Query: 257 DFQLR-KWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D R + C +E +E+ L G+ H N L I L + Sbjct: 259 DSYGRYAFSLCYGAEVHRVELPLAGR-----------HQVSNALAATSICLALGLSLAHI 307 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + LS P +GR L G T+ID+SYNANPAS+ AAI L +I +G R Sbjct: 308 CQGLSQLKPVKGR--MLPSVL--GRVTVIDDSYNANPASVGAAIDWLQEI----KGNRCL 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 VLGD+ E+G+ + H +L + ++ ++ G A + + + GL Sbjct: 360 VLGDLGELGDNAALLHRELGALAKAKGVNSLFCVGTLSEGASHAFGSKHYQDIDDLVAGL 419 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +I + L V+VK S S R++ L F Sbjct: 420 IQYI-NELPAEITVLVKGSRSARMERVVEALTTAF 453 >gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] Length = 455 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 232/453 (51%), Gaps = 32/453 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P +G+SI+SR+IA + F A+ G DGH+F+ + +GLVV + D L Sbjct: 21 PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLADVTDRASGLVVSSADT-----DLP 75 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P + V+D AL +LA R T+IA+TGS GKT+ K++++ L +A G+ Sbjct: 76 LPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAILGGFGTVHATKGN 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NNHIGVPLTL M D DF + E+G S EI +L + +P I++I + AHL F Sbjct: 136 LNNHIGVPLTLLDMQQDSDFAVIEMGASAGSEISYLCSIAKPQISLINNVQSAHLEGFGS 195 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKN------ 255 +E IA+AK EI+ GL+ GT LN D + +A+ AL G + +F + Sbjct: 196 VEGIAAAKGEIYSGLDTDGTAILNLDQPW----QAEWMALIGDRECITFSVDDDCADISA 251 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314 +D +L + C + + +S +VV+ I G H N L A ++ + Sbjct: 252 SDIELMESGCCRFTLHLFTDMSLES-QVVNLAIPGRHSVSNALAAAACAVAAGASIEQIV 310 Query: 315 KALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 L + +R + L QG +ID+SYNA+P S++AAI VL+ P GRR+ Sbjct: 311 SGL---EAAQSPARRLQAKDLAQG-GQIIDDSYNASPESVRAAIDVLAS-RP---GRRVM 362 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG- 432 VLGDM E+G ++ H ++ + S I ++ G ++ A A+ + H E++ Sbjct: 363 VLGDMAELGADAEQLHSEVGDYASSAGIDQLYTLG-NLSAAASAVFKGHHFTDLESLKAP 421 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 LF I+ S + ++VK S S ++++L+ Sbjct: 422 LFNEIEHSDL---TLLVKGSRSSKMDLVVDMLV 451 >gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans PD1222] gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222] Length = 1020 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 222/443 (50%), Gaps = 26/443 (5%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVD 89 ID R E G H+D HD L A+Q A +V + +A P+ V Sbjct: 584 IDRRMAMKHELSDFTAGKHWDIHDQ-LPALQGRIAAAMVARPVEGLAP----GFPLLQVP 638 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIG 148 D L AL +L VA R R K ++A+TGS GKT+ ML A++ +K +YN+ +G Sbjct: 639 DPLHALIQLGVAGRNRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVG 698 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNF-SGIEEI 206 + LA P D + E ++ + +F L+RP I ++T IAP+H+ G+E + Sbjct: 699 ILHLLANTPPSTDLVVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETV 758 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWK 264 A KA + EG+ GT+ LN + F+++ +AK L + +FG ++AD +L + Sbjct: 759 ARRKANLVEGIAPGGTLLLNREIDFYDVFLDRAKQRDL---CVVTFGAGEDADLRLVGYD 815 Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q + + ++ +L G + + G HMA N L +G+ +L D+ ++ L F P Sbjct: 816 QATGR--VKARLPGGGLLDYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPA 873 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 EGRG R T++D+SYNANP SM+AA+S + + GRRI +LGDM E+G+ Sbjct: 874 EGRGAVSRVEFEGCPLTVVDDSYNANPVSMQAALSTFAGMK--VAGRRILILGDMAELGK 931 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438 + +H LA + V L G + L D L +S HY ++ L + Sbjct: 932 DASRYHRGLAAQILKIRPDEVLLCGPLMQELWDELSKSGAGRVDGAHYPR-VEVLLSNLA 990 Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461 L GD V++K+SNS G R++ Sbjct: 991 GHLRSGDTVLLKASNSVGLGRIM 1013 >gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2, 6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax paradoxus EPS] gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus EPS] Length = 479 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/430 (32%), Positives = 207/430 (48%), Gaps = 26/430 (6%) Query: 1 MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T Q I G + P + + D+R++A + F A+KG +D +DF+ Sbjct: 4 MTPLNMTLAQAQQWIPGSRLVGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQ 63 Query: 60 AVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A +KGA + + + A + L +P D L AL L R + + +IA+TGS G Sbjct: 64 AKEKGAIAAIAHHGLEAAGLAGLEVP-----DSLVALGALGAGWRAQFELPLIAVTGSNG 118 Query: 119 KTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 KTT +M+ L + + + A G++NN IGVPLTL R+ + ELGM+H GEI Sbjct: 119 KTTVTQMIAAILVAFRADRALATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIA 178 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ + RP IA++ H + +E +A A +F L GT Y D+F L Sbjct: 179 RLSAISRPTIALVNNAQREHQEFMATVEAVAIENAAVFAVLPDDGTAVFPYGDTFTSLWT 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMA 293 +H G + +FG+ + AD L +WKQ +W + V+ + + H G H A Sbjct: 239 DMAHDGGSRRCMTFGEDEGADISLESAEWKQG---AWAVRVRTPLGNFDASLHIAGRHNA 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPAS 352 N L +D + LS F P +GR K L N+ TL+D+SYNANP S Sbjct: 296 GNALAATACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDS 355 Query: 353 MKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410 + AAI VL+ + PH + VLGDM E+G + FH ++ I V+ G Sbjct: 356 VIAAIDVLAGLPGPH-----LLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTET 410 Query: 411 ---VLALKDA 417 + A +DA Sbjct: 411 AHTIAAFQDA 420 >gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 457 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/399 (32%), Positives = 205/399 (51%), Gaps = 15/399 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +++ A G + ++GIS DSR+I E F +KG +++G F+ A++ Sbjct: 2 ILSVKEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKI 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G+ + T+ V ++G + PV VD+ AL+K+A R + + IA+TGS GKTTTK Sbjct: 62 GSASL---TESVNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS G++NN IG+PLT+ R+ D I E+GMS GEIR L ++ Sbjct: 119 DMIYDVLSMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIRRLKNIAD 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P++AV T I AH+ E I AK+E+ E ++ T+ LN DD L K Sbjct: 179 PNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLTNKKGPQY 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G K D + ++ E +V + G M+V + G H N L + I Sbjct: 239 ITYGIDNGDVKAFDIEYKE-----ESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAICIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + KAL+ F P R L+ +I+++YNANP SMKAA+SVL + Sbjct: 294 IKFGVNKEDMRKALAEFQPSAMR----LNILDVSGIKVINDAYNANPGSMKAALSVLKE- 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + R++AVLG+M E+GE S H ++ + + NI Sbjct: 349 --YKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENID 385 >gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. 18P13] Length = 454 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 147/469 (31%), Positives = 224/469 (47%), Gaps = 24/469 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ G ++ P V IS D+R+I P F A++G +DGH F A ++GA Sbjct: 5 TLTEIAQAV-GGTLSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V V +D V P VD AL A R + + + +TGSVGKTTTK M Sbjct: 64 --VAVISDHVIP----DCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + LS+ KT G+ NN IG+P TL + + E+GMS GEI L+ P Sbjct: 118 IALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPS 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I +H++ E I AK EI +G+ + +N DD + LK + Sbjct: 178 IGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLKTTLS----R 233 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +Y++G KNA R + SE L QG V IG H N I Sbjct: 234 PVYTYG-IKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNGAAAFCIG 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + + AL + P +G + + ++ T+I + YNA+P SM+A++SVL Q+ Sbjct: 293 MLAGMEPEEIAGALRTYQP-DGMRQNIQQIDDK---TVILDCYNASPDSMRASLSVLGQL 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSI 422 S GRRI VLGDM E+GE S+ H + +++ + ++ G + ++A + + Sbjct: 349 SV--TGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRYIAEEAAKQGV 406 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 V + + L ++ SL GD V+ K+S + L FPA+ Sbjct: 407 PVQHFTEKEALTEQLRRSLQPGDAVLFKASRGMQLESVAKAL---FPAL 452 >gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 452 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F +G + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CCVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIGVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] Length = 453 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 228/485 (47%), Gaps = 60/485 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++LL+A+ G I F N + ID+R I +FAI G ++G+ F++ A KG Sbjct: 3 LSLNELLEAMNGELIVKGKTDF-NSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKG 61 Query: 65 AGLVVV--------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 A + +V NTD + + V V+D AL LA R + +I +TGS Sbjct: 62 ASIAIVDEILFDLNNTDNLQT-------VIKVEDTEKALLNLANYYRKKLGLKVIGVTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+++ LS K + G++NN IG+PL + + +D + E+GMS+LGEI Sbjct: 115 CGKTSTKDLIAAFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGEID 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + RP IAVIT I +H+ N E I AK+EIF ++T T+ +N +D LLK Sbjct: 175 VLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDE--NLLK 232 Query: 237 AKSHALGIKTI--------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K I I Y+F D K +E+S + + GK Sbjct: 233 IKDKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGK--------- 283 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 H N ++ + + L D K + R + + + T+I++ YNA Sbjct: 284 --HNILNSMLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQ----VIKRNKITIINDCYNA 337 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +P SMK+++ VL S + GR+IA+LG M E+GE + HI++ Y ++ V L Sbjct: 338 SPDSMKSSMDVL---SSYKTGRKIAILGTMNELGEEAVKSHIEVGN----YALTKVDLL- 389 Query: 409 FHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V KD + E +D L I+ + DVV+VK+S F ++ Sbjct: 390 IAVGEYKDYFKKGFTGENIITFATKEECIDKLDTIIK----ENDVVLVKASRGMKFEDIV 445 Query: 462 NLLLE 466 + L E Sbjct: 446 SSLEE 450 >gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] Length = 447 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 226/462 (48%), Gaps = 29/462 (6%) Query: 11 LQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L I+ H+ G + + ++G+SIDSR+I F KG H DGH ++ A+ KGA Sbjct: 8 LNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGAY 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D A +PV V+D L AL +L+ A +IA+TGS GKTTTK+M+ Sbjct: 68 AALWQRD--AGEVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDMI 125 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS K G+YNN IG+PLTL ++ D + I E+GMS GEI L+H+ PHI Sbjct: 126 EAVLSPHFKVKKTQGNYNNEIGLPLTLCQLDEDTEISILEMGMSGFGEISLLSHIAEPHI 185 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A IT I +H+ + E IA AK EI +GL TG +F + D++ + L + K Sbjct: 186 AAITNIGESHMRDLGSREGIAKAKYEITDGL--TGPLFYDGDEALLKPLVKDN-----KD 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G +++ ++ + + + +Q + + +G H A+N + + I S L Sbjct: 239 AHRIGFNEDNEYYIHEMIMQDKH----LQFKVNDDTYIVPTLGSHNARNATIAIAIGSYL 294 Query: 307 ---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ +++ L + G R + LI+++YNA+P SMKAAI +SQ+ Sbjct: 295 GLSPEQINHSLQQLKL------TGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVSQM 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +I V GD+ E+GE +H + L I +V+ +G + A Sbjct: 349 DSE---VKIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAARHISKAAEPFTT 405 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + +T + L ++ L V+ K+S +IN LL Sbjct: 406 VQHFDTKEALTNHLKGMLNAHTSVLFKASRGMKLETIINELL 447 >gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 518 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 217/465 (46%), Gaps = 25/465 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+A H G IS D+RS+ P F A++G +D HDF+ A GAG Sbjct: 60 DVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGA 119 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV P++ V D L AL LA R R + + A+ GS GKTTTKEM+ Sbjct: 120 VVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGA 179 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L++ G+ NN +GVPLTL R+ + E GM+ GEI LT +++P + Sbjct: 180 ILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGL 239 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT + P HL +E +A A+ E+F L +N DD AK G Sbjct: 240 ITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK----GRGKRL 295 Query: 249 SFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG++++AD +L + + + E + V+ QG+ V H IG H A N + L Sbjct: 296 TFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALG 355 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L P +R T++D+ YNANPASM AA+ L + G Sbjct: 356 YSPEECVRGLESARPY---ARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAG 412 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL-------AEVLSLYNISHVWLSGFHVLA-LKDALP 419 GR +AVLGDM E+G H L A++++ + GF + L DA Sbjct: 413 -GRAVAVLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSE--KGFQAASGLGDAT- 468 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H++E + L ++ L GDVV+VK+S R++ L Sbjct: 469 ----AHFTE-VGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 508 >gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 450 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 224/444 (50%), Gaps = 24/444 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + SI+S+SI F +KG +DGHDFI A+ +GA + D+ S P Sbjct: 24 LIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGAISFITQKDVNTE---KSCPY 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L A+ LA A R + K I I ITGSVGKTTTKE + LS+ ++Y G++N Sbjct: 81 LKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKTTTKEYVFNVLSNKFRSYKNEGNFN 140 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P ++ +P +V E+GMS+ GEI FL+ + +P+I +IT I AH+ N Sbjct: 141 NHIGLPYSILNIPDEVKVATLEMGMSNFGEISFLSKIAKPNIGIITNIGVAHIENLKTRY 200 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 I AK+EI +G+ G + +N D+ ++L + H L K + + G +ADF+ + + Sbjct: 201 NIFLAKSEIQDGMPNDGILIINNDN---DILYSHRHELKRKVV-TVGIENDADFRAKDIQ 256 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + V +E +H N L + + IL + + K + K Sbjct: 257 KVDNGFFFVVSNHKYFIE----SFNFHDIYNSLFAIAVGEILGIEKEAIEKGIL---KKC 309 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G +R+ G T++D+SYNA+ SM +AI+ + S G++I VLGDM E+GE Sbjct: 310 GLRRRFEVIKKDG-LTVVDDSYNASTHSMMSAINGVCGFS----GKKILVLGDMLELGEF 364 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSL 441 S+ H + + + I + +G + D + + SI +Y+ + L + + Sbjct: 365 SEQEHRKVGKYIVSKPIDVIICTGKDAFYIFDEVRKNSSSIKAYYASKEECLNILKKEIE 424 Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465 ++ VV+ K+S L++ L Sbjct: 425 IET-VVLFKASRGMKLDELVDNFL 447 >gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH9] gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Staphylococcus aureus 04-02981] gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 452 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI L ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 217/465 (46%), Gaps = 25/465 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+A H G IS D+RS+ P F A++G +D HDF+ A GAG Sbjct: 9 DVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGA 68 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV P++ V D L AL LA R R + + A+ GS GKTTTKEM+ Sbjct: 69 VVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGA 128 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L++ G+ NN +GVPLTL R+ + E GM+ GEI LT +++P + Sbjct: 129 ILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGL 188 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT + P HL +E +A A+ E+F L +N DD AK G Sbjct: 189 ITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAK----GRGKRL 244 Query: 249 SFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG++++AD +L + + + E + V+ QG+ V H IG H A N + L Sbjct: 245 TFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALG 304 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L P +R T++D+ YNANPASM AA+ L + G Sbjct: 305 YSPEECVRGLESARPY---ARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAG 361 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL-------AEVLSLYNISHVWLSGFHVLA-LKDALP 419 GR +AVLGDM E+G H L A++++ + GF + L DA Sbjct: 362 -GRAVAVLGDMLELGPGELEEHAALGTRAAGRAQLVAFFGPRSE--KGFQAASGLGDAT- 417 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H++E + L ++ L GDVV+VK+S R++ L Sbjct: 418 ----AHFTE-VGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 457 >gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] Length = 473 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 221/453 (48%), Gaps = 31/453 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+ DSR+I P F I G +DGH+F+ + GAG D L P+ Sbjct: 26 IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGGAGAAFWQRDHQPVPADL--PL 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL LA A S+A ++ ITGS GKTT K+M++ L + + G+YNN Sbjct: 84 IFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKDMVSALLETTYNVHKTQGNYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ M D D + E+GMS EI L+++ RP + VIT + AHL EE Sbjct: 144 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREE 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257 IA AK EI G++ G + + D+ + A+ + G++T ++FG D Sbjct: 204 IARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKPEGLRT-FTFGNQDTNDDYPTG 262 Query: 258 --FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 F R S + E G S+ + +G H N L + + + L D AI+ Sbjct: 263 LMFHARGIIFTSSRHAGE----GFSLPL----LGRHNVVNALAAMAVATHLGIG-DEAIR 313 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S F + R T+++++YN++P ++KAA+ VL + G RRIAVL Sbjct: 314 --SGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGDMK--GYRRRIAVL 369 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALPRSIHVHYSETMD 431 GDM E+G+ +SFH ++ E LS N V+ G L K P + +++ + Sbjct: 370 GDMLELGQREESFHAEIGEYLSPDNADLVFTYGPLSLHTANKAKARFPEGAVLSFTDK-E 428 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L + + + D+V+VK+S +++ L Sbjct: 429 KLIEALLEQVTEKDIVLVKASRGMRLEHVVDAL 461 >gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 252 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/243 (49%), Positives = 154/243 (63%), Gaps = 6/243 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLW L A G IG P+ + G SID+RS+ P + FFAI+G DGHDF+ A+ Sbjct: 5 PLWIPSALEAATGGRLIG-EPRA-IRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALD 62 Query: 63 KGAGLVVV---NTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KGAG VV D A G L++P G D VL A+ +L +AAR RS+A I+A+TGSVG Sbjct: 63 KGAGAAVVAASRADDCAGAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSVG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKE L LS+ T+A + SYNNH GVPLTLARMP FG+FE+GM+H EI L Sbjct: 123 KTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEAAQFGVFEIGMNHGAEILPL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D++ FE L A Sbjct: 183 TAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNANFERLLAH 242 Query: 239 SHA 241 + A Sbjct: 243 AQA 245 >gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida F1] gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas putida F1] Length = 455 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 195/394 (49%), Gaps = 25/394 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + PL + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 2 LKPL-SLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + + + +P V AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----VAGVDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGGIAILNLDDKAFDIWKARA- 233 Query: 241 ALGIKTIYSFGKSK-NADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G + SF +S ADF R + C + G+++ V + +G H N Sbjct: 234 --GAHKVVSFARSNPKADFHASDIGRDARGCPS---FTLHGAGETVAVQLNVLGEHNVSN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L+ P +GR + A N +ID+SYNANP SM A Sbjct: 289 ALAAAAAAHAVGLSLSGIAAGLAAVQPVKGR-TVAQIAPNG--VRVIDDSYNANPTSMCA 345 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AI +L+ S GR + VLGD+ E+G+ ++ H Sbjct: 346 AIDILAGFS----GRTVLVLGDIGELGQWAEEGH 375 >gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] Length = 454 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V GIS D+R+I F A++G ++DG ++I A +KGA VVN D +I PV Sbjct: 25 MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ + LA +IAITGS GKTTTK++++ L K +YNN Sbjct: 82 IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+ T+ + D + + E+G + GEIR LT++ P IA+IT I +HL N E Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL++ G LN DD +K + + L K I +FG ++D+++ K Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPILREVK-QEYKLPEKNI-TFGIKPDSDYRMEMIKA 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++E+ +G+H N M++ + ++ D K L E Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R L F L D SY +NP S+ + + + HG R+IAVLGDM E+G+ Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436 + H ++ + ++ I +V +G L + + + +++E D +F F Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q +VD +V+VK+S++ F +L+ + E Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus bromii L2-63] Length = 450 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 216/467 (46%), Gaps = 23/467 (4%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +T ++ +A G +G + + + DSR + F AIKG DGHDFI Sbjct: 4 FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEKCFA 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + + + + P V L A+ K+ A R + +I I+GSVGKT+T Sbjct: 64 QGAVCALCE----KAPENATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS KT+ G+ NN +GVPLTL MP D + + E+G+S GE+ L+ +V Sbjct: 120 KEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMTRLSEMV 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I V+T I HL N + + AK E+F+ + LN DD +K + Sbjct: 180 QPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVKTVN--- 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G K ++ FG DF + K + + + +++V IG +M N L Sbjct: 237 GKKPVF-FGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNALAAAA 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L + ++ + R +N G +ID+ YNANP S++A++ LS Sbjct: 296 AGKLLGLTDEEIANGVASYKTVGSRAN----VINTGKIKIIDDCYNANPTSVRASLDTLS 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + +GR++A+LGDM E+G H D I V G L L + Sbjct: 352 NL----DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVITVG----ELAKELAKG 403 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +T++ I ++ GDVV+VK+S+S F ++ L + F Sbjct: 404 ADGKAFDTIEDAKPEILKTIKSGDVVLVKASHSMQFENIVEFLKQNF 450 >gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] Length = 460 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 35/456 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R+I + IKG ++GH F+ A++ GA + N D I V Sbjct: 27 IEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENGAVATLWNKD--EENPPTDISVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA + R ++ ITGS GKTT K+M+ L + + G++NNH Sbjct: 85 LVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLDTTYRVLKTDGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ D + E+GMS GEI FL++L P +A+IT I +HL + + I Sbjct: 145 IGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL TG + N D+ LL ++ +T+ +FG S+ D Sbjct: 205 AEAKLEITSGLAPTGQLVYNGDEP---LLTSRVVNPVFETM-TFGSSEQNDLY------- 253 Query: 267 SEQSWMEVQLQGKSMEVVHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S + + G + V +G H N L + + D +T K L Sbjct: 254 --PSAISAEELGTTFTVSRETTYSFFIPVLGKHNVHNALSAIAVGHYFGLDNETIAKGL- 310 Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 KE + R L T I+++YNA+P S+KAAI+++ + G ++I VLG Sbjct: 311 ----KELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL--EGYKQKILVLG 364 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGL 433 DM E+G+ + FH ++ E + I +V G + ++ + V + E D L Sbjct: 365 DMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAEDKVMHFEEKDEL 424 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + DVV+VK+S +I+ ++ + P Sbjct: 425 VKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460 >gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS] gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS] Length = 1299 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 10/382 (2%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P V V AL LA+A R I+A+TGS GKT+T M+ L + Sbjct: 504 VPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKN 563 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHL---GEIRFLTHLVRPHIAVITTIAPAHLSN 199 +N GV +A + + + E+ S L G R +++RP +A+IT+I AHL Sbjct: 564 FNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPR--PNVLRPEVAMITSIGEAHLEY 620 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + +A K+ +F+ L GT + D ++ + ++ A G T+ SFG +AD Sbjct: 621 FGSPQGVAEVKSNVFD-LMSRGTAVIPRDADTYDYMVQRARAAGATTV-SFGAHPSADAH 678 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 L + + +E ++ G+ + +G H A+N + LG+V+ L D A AL+ Sbjct: 679 LLSY--SAADGVVEAEIFGERITYELGALGRHFARNSVGALGVVAALGLDWRRAAGALAS 736 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GRG + G FTLID++YNANP+S++AAI +LS+ + GRRIAVL DM Sbjct: 737 SREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGRRIAVLADML 796 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G S+ FH LAE L I V+L G + AL D LP I Y T+DGL + Sbjct: 797 ELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTVDGLQAALDR 856 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 DGDVV+ K SN ++++ Sbjct: 857 EFADGDVVLFKGSNGTELHKVV 878 >gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosospira multiformis ATCC 25196] gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/397 (34%), Positives = 205/397 (51%), Gaps = 32/397 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR++A E F A+ GP++DGHDFI+ A +GA +V D + IP+ V Sbjct: 10 GVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGIPLIRV 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------------- 135 + AL +LA R R ++A+TGS GKTT KEM+ L + Sbjct: 70 QNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEEMRTDAPDA 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 A G+ NN IG+PLTL R+ + + E+GM+H GEI +L+ L +P +A+IT A Sbjct: 130 VLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVALITNAGDA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSK 254 H+ +E +A AK EIFEGL++ G +N DD L + + G + I FG KSK Sbjct: 190 HIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELA---GNRQIIDFGLKSK 246 Query: 255 ---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 +AD++L + + + L E G H +N L + + + Sbjct: 247 AKVSADYKL-----TFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGVSLK 301 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 T LS F +GR +R +C + TLID+ YNANP S++AA++VL++ EG++ Sbjct: 302 TIASGLSTFGGVKGRMQR-KCGVRGA--TLIDDCYNANPDSVRAALAVLARA----EGKK 354 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + VLGDM E+G+ + FH + + + I + G Sbjct: 355 VLVLGDMGELGDKGREFHEQIGDEARIAGIDELMALG 391 >gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] Length = 454 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/400 (32%), Positives = 195/400 (48%), Gaps = 17/400 (4%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L +QG GI +G+S D+RS+AP F ++G +DGH FI A +KGA Sbjct: 11 ELASVVQGRLQGI--NIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAA 68 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 ++ + + +P V D AL +LA R R I+A+TGS GKTT KEM+ Sbjct: 69 LLEQRI-----NDPLPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMIAS 123 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L ++ A G+ NN IGVPLTL + F + E+G + GEI +L+ L RP +A+ Sbjct: 124 ILGWVEPILATRGNLNNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQVAL 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT PAHL F ++ +A AK EIF+G+ G LN DD F + + L + Sbjct: 184 ITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPHFSYWRDLAGGL---PVM 240 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 FG S++A+ R ++ S + +++ G H N L L Sbjct: 241 GFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAIALGV 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D +L+ GR + R G L+D++YNANPAS++AA+ +L++ Sbjct: 301 DRQHLSASLAALPSIPGRLQIRR---GIGGMRLLDDTYNANPASLQAALELLAKFP---- 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 G R VLGD E+GE + H + + ++ ++ G Sbjct: 354 GERALVLGDFAELGEEAAPLHQAMGKQARAAGVNRLYTLG 393 >gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 438 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 214/453 (47%), Gaps = 40/453 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85 + I +DSR F I G H DGHDFI AV++GA V+ + D+ + Sbjct: 14 IEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKKYPEVRF 73 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V D AL ++ + R + +I +TGS GKTT + ML +ALSS ++ + G+ N+ Sbjct: 74 WQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVFQTAGNANS 133 Query: 146 HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 +GVP+TL ++ + + ELGMS GE+ + + R +A+IT I AH+ N E Sbjct: 134 QLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENLKTKE 193 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 I K I +G ++LN +D L + + H LGI S GK Sbjct: 194 NILLEKLHILDGAADGAALYLNGEDPLLASLTEERIHDLGI----SLGKR---------- 239 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 +E+ E+ G+HM QN L + L + ++AL F Sbjct: 240 --------VELHFYRAEEEIPLSAAGHHMQQNAAAALAVSLDLGLQREGVLRALRGFSGL 291 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GRG++ L++ ++D+SYNA+P ++KA++ VLS+ R+IA+L DM E+GE Sbjct: 292 KGRGEKL---LSRSGIGILDDSYNASPDALKASLLVLSKEKGR---RKIALLSDMLELGE 345 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---------KDALPRSIHVHYSETMDGLF 434 S+ H D LS I V L G L + + R I V + + L+ Sbjct: 346 RSEELHEDCGAFLSSLPIDRVLLYGEKSLGILRGIRREEKRRGDGRQIPVSHFSNAEELY 405 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + GD+V+ K S+S G RL+ EE Sbjct: 406 RELLREAAPGDLVLFKGSHSMGLSRLVERFREE 438 >gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus 132] gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] Length = 452 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 37/451 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + + + + K H+ +G H +N + + + + ++ + +K Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLK 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +S+ G R + T+I+++YNA+P SM+AAI LS ++ GRRI +L Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILIL 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434 GD+ E+GE S+ HI + L +I ++ G + D+ + + + + D + Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L D V+VK S ++N L+ Sbjct: 421 EVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 452 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L D V+VK S ++N L+ Sbjct: 424 INDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] Length = 475 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 144/488 (29%), Positives = 227/488 (46%), Gaps = 39/488 (7%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P ++ +LL+A+ G + + G+S D+R + + +KG ++DGHDF+ AV+ Sbjct: 7 PQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVK 66 Query: 63 KGAGLVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 KGAG V+V+ T + G L I V DD L AL LA R +IAIT Sbjct: 67 KGAGGVLVDVHHAFILETGSKKTDGCLKILV---DDTLKALGDLARFWRRAVGRPVIAIT 123 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKEM L G+ NN IG+PLTL RM D + ELG + GE Sbjct: 124 GSSGKTTTKEMTAAILEQTFSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGTNARGE 183 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I+ LT + P I ++T I PAHL +E I K +++ + K+G N DD Sbjct: 184 IKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADDEAMAP 243 Query: 235 LKAKSHALGIKTIYSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290 L+ + ++G + AD + KW + + + G VVH G Sbjct: 244 LRRSWQG----KMLTYGITSRADMTASDIAKWGESGQSFTLNA---GSESTVVHLSAFGM 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L + ++ + L FHP R + + L G F L+D++YNANP Sbjct: 297 HNIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVH--FLPNGAF-LVDDTYNANP 353 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 AS++ A+ + + G R + VL DM E+G+ ++ H + + ++ ++L G Sbjct: 354 ASVREALKTIQTLK--GNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSL 411 Query: 409 ---FHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 A+K + + + E +D + F+++ GD ++VK S ++ Sbjct: 412 SRSTAAGAIKGGMTEERILFFEDPEEILDDVLSFVEA----GDWILVKGSRLMKMEEIVK 467 Query: 463 LLLEEFPA 470 +L+ PA Sbjct: 468 KILDRTPA 475 >gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] Length = 454 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V GIS D+R+I F A++G ++DG ++I A +KGA VVN D +I PV Sbjct: 25 MVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ + LA +IAITGS GKTTTK++++ L K +YNN Sbjct: 82 IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+ T+ + D + + E+G + GEI LT++ P IA+IT I +HL N E Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL++ G LN DD +K + + L KTI SFG ++D+++ K Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPVLREVK-QEYKLPEKTI-SFGIKPDSDYRMEMIKA 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++E+ +G+H N M++ + ++ D K L E Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDVAKGLKKI---EL 312 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R L F L D SY +NP S+ + + + HG R+IAVLGDM E+G+ Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLETAYGL--HGYSRKIAVLGDMLELGDNE 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436 + H ++ + ++ I +V +G L + + + +++E D +F F Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q +VD +++VK+S++ F +L+ + E Sbjct: 424 LQELIVDNTLILVKASHAMQFDKLVEQIKE 453 >gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] Length = 473 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 216/456 (47%), Gaps = 39/456 (8%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----- 85 +IDSR I+ E FFA+KG H DGH F+ A + GA L VV+T+ + Sbjct: 32 AIDSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTE 91 Query: 86 ---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D L AL KLA R + I+ I GS GKTTTKEM L + + A G+ Sbjct: 92 NLFLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVLGTTFRVVATEGN 151 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NNHIGVPLTL R+ D + + E+G++H GE+ L + P +IT I H Sbjct: 152 FNNHIGVPLTLFRLRDDTEIAVVEMGINHHGEMNELCQIAEPTHGLITNIGHEHCEFLGT 211 Query: 203 IEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK------N 255 EEIA A+ E++ L +T G+ F+N DD L + L ++T+Y + Sbjct: 212 PEEIAMAEGELYRYLSRTGGSGFVNADDG---LASQTAGELNLQTLYGIEQPNLGLNIWA 268 Query: 256 ADFQLRK-----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + QL + +K C+ + + + LQ G H N L I A + Sbjct: 269 KEVQLNQQGCASFKICTPKQALTLNLQIS---------GRHNVYNALAAAAIGLNFGAKL 319 Query: 311 DTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ AL F PK G + R CA T++++SYNANP SM++A+ L+ + +G Sbjct: 320 ESVKLALEHFVPKSGSKRMERICAAG---LTILNDSYNANPESMRSALGTLASLIC--DG 374 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 ++I +LGDM E+G +S++ H L E + I + G + P H++ T Sbjct: 375 KKIVLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQEAPNKCKGHFN-T 433 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ GD ++ K S ++ LL Sbjct: 434 KSEMVQALKEVAAPGDALLFKGSRGMKMEEVLEALL 469 >gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] Length = 454 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 30/450 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V GIS D+R+I F A++G ++DG ++I A +KGA VVN D +I PV Sbjct: 25 MVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRD-YRNINDY--PV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ + LA +IAITGS GKTTTK++++ L K +YNN Sbjct: 82 IEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDIMSSLLKEKYKVVKTQKNYNN 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+ T+ + D + + E+G + GEIR LT++ P IA+IT I +HL N E Sbjct: 142 EIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKEN 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL++ G LN DD +K + + L KTI + G ++D+++ K Sbjct: 202 IARAKFEILEGLKEDGIFILNNDDPILREVK-QEYKLPEKTI-TLGIKPDSDYRMEMIKA 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++E+ +G+H N M++ + ++ D K L E Sbjct: 260 DETGSTFSINDHVFNIEL----LGHHQMYNATMSIIVAELMGLDYSDIAKGLKNI---EL 312 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R L F L D SY +NP S+ + + + HG R+IAVLGDM E+G+ Sbjct: 313 TGMRNELILLDKFHILND-SYKSNPQSLTSCLE--TAYGLHGYSRKIAVLGDMLELGDNE 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--------- 436 + H ++ + ++ I +V +G L + + + +++E D +F F Sbjct: 370 ITLHKNIGKSINPEKIDYVLATG----PLAENIIKGARTNFAE--DKVFYFETKEELLEK 423 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q +VD +V+VK+S++ F +L+ + E Sbjct: 424 LQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] Length = 452 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 222/451 (49%), Gaps = 37/451 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + + + + K H+ +G H +N + + + + + + +K Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNRIYQNLK 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +S+ G R + T+I+++YNA+P SM+AAI L+ ++ GRRI +L Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT----GRRILIL 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434 GD+ E+GE S+ HI + L +I ++ G + D+ + + + + D + Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S L D V+VK S ++N L+ Sbjct: 421 EVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] Length = 467 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 215/448 (47%), Gaps = 21/448 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGSLS 82 V G+ DSR Q F + G +DGH+++ V + + + N S ++ Sbjct: 25 MVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEASAAAFLWQKNHGAPPSENAIE 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V+D L AL LA A + +++ ITGS GKTTTK+++ L + K + G+ Sbjct: 85 -----VEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKTEGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNHIG+PLT+ MP D D I E+GMS GEIR L ++ +P +A+IT I +HL Sbjct: 140 YNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQPDVAIITNIGESHLLQLGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNADFQ 259 EIA AK EI GL+ G + N D+ + A+S + G+K +++FG + D Sbjct: 200 RAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVKPEGLK-LFTFGLATGNDDY 258 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + E S GK + +G H N L L + D D K LS Sbjct: 259 PTEITSDGEGSLFITAQSGKEAFRLPL-LGQHNVVNGLAALAVARHFNVDADHIRKGLSS 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R + C T+++++YNA+PASMKAAI LS +GR++AVLGDM Sbjct: 318 LKLTGMRIEVVNCP---NGLTVLNDAYNASPASMKAAIQTLSAYKT--DGRKVAVLGDML 372 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLF 436 E+G + FH ++ + +++ ++ G + L + +VH L Sbjct: 373 ELGPEEKQFHEEIGIFAAKHDVEVLFTYGALGTSIAQGAQGLMPTANVHAYTDKQELIQH 432 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q L D+V+VK+S +++ L Sbjct: 433 LQVYLHANDIVLVKASRGMRLEEIVDAL 460 >gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] Length = 452 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI L ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] Length = 459 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 143/446 (32%), Positives = 228/446 (51%), Gaps = 23/446 (5%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G IG +++ I DSR + + F A+KG ++DG DF+ AV KGA V+V+ M Sbjct: 15 GELIGDKTSCWISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVDR-MQ 73 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 G L++PV V D L AL +A+ R A IIAITGS GKT+TKEM+ L K Sbjct: 74 PGFGPLAVPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQKYK 133 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 T G++NN IG+PL+L +M ++G+FELG +H GEI L+ ++ P I ++T I A Sbjct: 134 TVCTSGNFNNQIGLPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPDIVIVTNIGSA 193 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 H+ +F +E IA K ++ + G L DD + + L +S + I+ G +N Sbjct: 194 HVGHFGSVEAIAQEKTDLLTFVSARGFAILGTDDFWSKRLHVRSAG---RVIW-VGDRQN 249 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM--TLGIVSILTADVDTA 313 + L + + + + EV + MA+N L +G +S L+++ T Sbjct: 250 SLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSLSSEEIT- 308 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L EGR + + GF ++D+SYNANP SM +A+ L + P ++I Sbjct: 309 -RGLEKTSFPEGRLTVH--PIKNGF--VLDDSYNANPQSMLSALRALVEY-PF-SSKKIV 361 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLG M E+G+ +++ H ++ +SHV + G + + + L P ++ Sbjct: 362 VLGSMGELGDKARASHFEVGSFAGGLPLSHVIVVGPYGEDVYEGLRSSSFPIDCIFRTAD 421 Query: 429 TMDGLFLFIQSSLVDGDV-VVVKSSN 453 T + F L++G+V V+VK S Sbjct: 422 TEEAFFCL--HKLLNGNVTVLVKGSR 445 >gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] Length = 452 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 219/463 (47%), Gaps = 17/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ +A+ G I + N +SID+R ++ F AI G +++G+ FI +AVQKG Sbjct: 1 MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 60 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L +V+ I + V+D AL LA R ++AITGS GKT+TK Sbjct: 61 AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L S + + G++NN IG+PL + ++ + + E+GM+H EI + R Sbjct: 121 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N E I AK EI + K + +N D+ K H Sbjct: 181 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KKHEF- 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K+I S N + L C + E ++QG+ + V + G H +N ++++ Sbjct: 235 -KSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGEKL--VLNMPGKHNIENAMLSIAAA 291 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + K L R +N ++D+SYNA+P SM AAI V + Sbjct: 292 LKLGLTFEEIRKGLKDLELTAMR----LDIVNGENIVIVDDSYNASPDSMIAAIDVTKNL 347 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RRIAVLG M E+GE S H ++ NI + + G A D + Sbjct: 348 KGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 404 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ET + L F+++ + GD+ ++K+S F ++ L E Sbjct: 405 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 447 >gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Paenibacillus polymyxa SC2] gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus polymyxa SC2] Length = 467 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 218/446 (48%), Gaps = 17/446 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIP 84 V G+ DSR F + G +DGH ++ V ++GA + D A ++ Sbjct: 25 MVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSERGATAYLWQKDHGAPP---TVN 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L AL LA A + +++ ITGS GKTTTK+++ L + K + G+YN Sbjct: 82 AIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKTEGNYN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+PLT+ MP D D + E+GMS GEIR L ++ +P +AVIT I +HL Sbjct: 142 NHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQPDVAVITNIGESHLLQLGSRT 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRK 262 EIA AK EI G++ G + N D+ + A+ + + +++FG + + D + Sbjct: 202 EIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVKPEGLELFTFGLAADNDDYPTE 261 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E S G+ + +G H N L L + D D K LS Sbjct: 262 ITSDGEGSLFITAQSGQEAFRLPL-LGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKL 320 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + +C+ T+++++YNA+PASMKAAI LS GR+IAVLGDM E+G Sbjct: 321 TGMRIEVVKCSDG---LTVLNDAYNASPASMKAAIQTLSAYKTG--GRKIAVLGDMLELG 375 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMDGLFLFIQ 438 + FH ++ + +NI ++ G ++ + +P + +VH L ++ Sbjct: 376 AEEKQFHEEIGRFAAKHNIEALFTYGALGASIAQGAQGTMP-TANVHAYTDKQKLIQHLR 434 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 S L D+V+VK+S +++ L Sbjct: 435 SYLHADDIVLVKASRGMRLEEIVDAL 460 >gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] Length = 452 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 37/451 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + + + + K H+ +G H +N + + + + ++ + +K Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLK 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +S+ G R + T+I+++YNA+P SM+AAI LS ++ GRRI +L Sbjct: 311 NVSL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILIL 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434 GD+ E+GE S+ HI + L +I ++ G + D+ + + + + D + Sbjct: 361 GDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMI 420 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L D V+VK S ++N L+ Sbjct: 421 EVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 466 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 221/461 (47%), Gaps = 45/461 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 GIV QG V DSR I F + G +DGHDF +Q GAG + S G Sbjct: 24 GIVVQGVVT----DSRQITKGCLFVPLAGERFDGHDFASDCLQAGAGACL----WALSKG 75 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + P VDD L AL LA + + A ++ ITGS GKTTTK+++ LS+ K + Sbjct: 76 TPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKDLVYALLSTTYKVHKT 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NNHIG+PLT+ MP D + + E+GMS GEI L+ + P AV+T I +HL Sbjct: 136 KGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEPETAVVTNIGESHLLQ 195 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFG-KSKN 255 EEIA AK EI G++ G N D+ + A+ + G++T +FG + +N Sbjct: 196 LGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLAEPSTVKPEGLQT-ATFGLRPEN 254 Query: 256 ---------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 D Q SE +E+ L +G H N L + + Sbjct: 255 DQYPTGILFTDHQTLFTPHGSEGDPLELPL-----------LGEHNVSNALAAITVARHY 303 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + AI+ F E G R + T+++++YNA+P SMKAA+ VL + Sbjct: 304 GVG-EAAIR--EGFSKVELTGMRIEVITGRSGITILNDAYNASPTSMKAALGVLEHMK-- 358 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRS 421 G ++IAVLGDM E+G+ +H ++ E+L+ + ++ G H+ A K P Sbjct: 359 GYRKKIAVLGDMLELGDSEADYHREIGEMLTPGTVDQLFTCGPLSRHIAEGAKKQLDPNF 418 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 IH + ++ L + S L DVV+VK+S ++ Sbjct: 419 IHAYTDKSE--LIRKLVSLLHPQDVVLVKASRGMKLEEVVE 457 >gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Paris] gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Paris] gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 445 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 215/444 (48%), Gaps = 25/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN I + IP F Sbjct: 20 ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V L AL K+A A R IIA+TGS GKTT KEM+ L + ++A G+ NNH Sbjct: 76 VVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I+ + Sbjct: 134 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 A +K EI +GL TG +N DD+ F++ L A K I F AD + Sbjct: 194 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 247 Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++ + L +E+ G H +N L + + + L+ F Sbjct: 248 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +G R Q T+ID++YNAN S+ A+ VLS P GR+I V GDM E+G Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RP---GRKIFVFGDMGELG 360 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A H+ + + L +++ L Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442 >gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 231/478 (48%), Gaps = 33/478 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL T+ ++ +A G + G V G+S DSRS+ + F + G +DGHDFI +A Sbjct: 1 MKPL-TYEEVAKATGGR-VEKSFSGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + GA + D + +L++ PV VDD AL +LA R +AITGSVG Sbjct: 59 FEAGASATLCAEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKEM+ L+ + G++NN IG+PLTL R+ D G+ E+GMS GEI L Sbjct: 119 KTTTKEMIAAVLTRRYRVLKNEGNFNNEIGLPLTLFRLE-DHQVGVVEMGMSGFGEISRL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +V+PH+AVIT I +H+ E IA AK EI E L K + LN D L AK Sbjct: 178 SAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSP---ELYAK 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 L +T+Y FG K + +V V G H N L Sbjct: 235 RGTLTPRTVY-FGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +D + L P + R + + +ID+ YNA+P SMKAA++ Sbjct: 294 AIAVGLEFGLSIDEIRRGLMELKPTKMRLEFKKTPFGA---VVIDDCYNASPDSMKAALN 350 Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAE--------VLSLYNISHVWLSGF 409 VL ++ GEGRR +A+LGDM E+G+ + H ++ ++ + N + G Sbjct: 351 VLREL---GEGRRKVAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNHAEDLAKGA 407 Query: 410 HVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L PR IH + E +D L ++ D D+++VK+S +++ L+ Sbjct: 408 TEAGLG---PRFIHTFSTNKEAIDRLGELVE----DCDIILVKASRGMKLEEIVDFLV 458 >gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum EA 2018] Length = 455 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 219/463 (47%), Gaps = 17/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ +A+ G I + N +SID+R ++ F AI G +++G+ FI +AVQKG Sbjct: 4 LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 63 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L +V+ I + V+D AL LA R ++AITGS GKT+TK Sbjct: 64 AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L S + + G++NN IG+PL + ++ + + E+GM+H EI + R Sbjct: 124 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N E I AK EI + K + +N D+ K H Sbjct: 184 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL-----KKHEF- 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K+I S N + L C + E ++QG+ + V + G H +N ++++ Sbjct: 238 -KSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGEKL--VLNMPGKHNIENAMLSIAAA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + K L R +N ++D+SYNA+P SM AAI V + Sbjct: 295 LKLGLTFEEIRKGLKDLELTAMR----LDIVNGENIVIVDDSYNASPDSMIAAIDVTKNL 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RRIAVLG M E+GE S H ++ NI + + G A D + Sbjct: 351 KGN---RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ET + L F+++ + GD+ ++K+S F ++ L E Sbjct: 408 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 450 >gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 463 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 242/452 (53%), Gaps = 33/452 (7%) Query: 27 VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 +N ISIDSR I ++ F AIKG ++G FI +++ GA + V+N V +++IP Sbjct: 24 INSISIDSRKIFNKKNCLFIAIKGKKFNGECFIKESIKNGA-VAVINARKV----NINIP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + + +L +L+ R SKA IIAITGS GKT+ KE++ L++ T A ++N Sbjct: 79 HLIVKNTIISLLRLSKWIRENSKAKIIAITGSSGKTSVKEIIFNILNTFSNTIATKKNFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N+IGVPLTL R+ + +F I E+G + GEI+ ++L++P IA+I I+ +HLS F I Sbjct: 139 NNIGVPLTLLRLNKNHNFAIIEVGGNKFGEIKTSSNLIKPDIALINNISESHLSGFKSIN 198 Query: 205 EIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQL 260 ++ AK EIF G++ K G I LNY+ + ++ K K L ++ FG K+K F L Sbjct: 199 GVSKAKEEIFSGIQGKKNGIIVLNYNSNDWKEWKKK---LKDNLVFWFGIIKNKKKYFYL 255 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + K+ + + Q + EV IGYH N + + I ++ A +++ L Sbjct: 256 KNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNAMAAIAISFLVGASMESIKYGLKKS 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +P + R + LN+ +ID+SYNAN SM +AISVL+ + G +I ++GD+ E Sbjct: 316 YPFKRR--LFPIFLNKNKI-IIDDSYNANVGSMISAISVLNNM----PGYKIIIIGDILE 368 Query: 381 MGELSQ-SFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLF 434 +G+ + H ++ +S I+ V+ G+ + + K +I SET+ + Sbjct: 369 LGKQKEIIIHKNIGFFISKSKINKVFSIGYLSYFSSIFSKKGKHFYNIDYLISETIKMI- 427 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S V++K SN Y ++ +L E Sbjct: 428 -----SRYPIITVLIKGSNKTDAYNIVKMLQE 454 >gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 450 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 214/457 (46%), Gaps = 37/457 (8%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I P V+GI+ DSRSI +AF A+KG +++GHDFI A++KGA ++V D S+ Sbjct: 22 ISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIEKGAATLIV--DQPVSV 79 Query: 79 GSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S S IPVF V + L +LA R + +IAITGSVGKTTTKE++ L++ K + Sbjct: 80 NSSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATQGKVH 139 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 + +YNN IGVP TL + + + E+GM GEI L + RP IAVIT + AH+ Sbjct: 140 KTLANYNNEIGVPKTLLELDETHNSAVIEMGMRGRGEIALLAQITRPTIAVITNVGTAHI 199 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 IA AK E+ + LNYD AK G Y F Sbjct: 200 GRLGSEAAIAEAKCELLAESPSSSIAVLNYDHPLLT-ETAKRVWQGETITYGFSGGDIVG 258 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L +++ G + G H A N + L + IL D + + + Sbjct: 259 ELL---------DLTTLRVNGLDFNLPLS--GRHHALNFMAALAVAKILGIDWTSLQEGI 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 V P GR KRY+ A + L+DE+YNA SM AA+ +L R IAVLG Sbjct: 308 KVNLPS-GRAKRYQLATD---ILLLDETYNAGLESMLAALDLLKATPGQ---RHIAVLGT 360 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S+ H + E + I +++ L D + +D Sbjct: 361 MKELGSFSEQLHRQVGERVQKLGIDRLFV-------LVDDPEAKFIAEAATAVDCECFQT 413 Query: 438 QSSLVD--------GDVVVVKSSNSCGFYRLINLLLE 466 + L++ GD ++ K+S+S G R++ L++ Sbjct: 414 HADLINRLKEVIDFGDRILCKASHSVGLNRVVEELIQ 450 >gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 442 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 229/454 (50%), Gaps = 26/454 (5%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSL 81 P + G S+DSR + + F + G DGH+FI A+ GA +VN D+ ++ S+ Sbjct: 4 PDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRHSV 63 Query: 82 SIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTY 137 P V V+D L AL ++A R + +++A+TGS+GKTTTK+M+ L+ SI KT+ Sbjct: 64 HPPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSILKTH 123 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 G+ N+ IG+PL L + + E+GM++ GEI L L RP++ VIT IA +H+ Sbjct: 124 ---GNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRIAESHI 180 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +E IA AK E+ E L GT LN DD++ L++K + +G + + D Sbjct: 181 EKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPG----EVLYYGLT-DGD 235 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + +++ ++ KS ++ IG H N L + + + D+ +I+AL Sbjct: 236 LSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGLDLTQSIRAL 295 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F G R + ++ +ID++YNAN S AA VL+ + + RRIAVLGD Sbjct: 296 EGF---TGTSMRNQIKYHKDMI-IIDDTYNANVQSTLAAFDVLTNLPLN---RRIAVLGD 348 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDG 432 M E+G+ ++ H + E ++ G A K +P ++H ++ Sbjct: 349 MFELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKLGMPEHQNIHVADREQA 408 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +Q + GD ++VK S +++N LL+ Sbjct: 409 IQRILQ-IVKSGDGILVKGSRGMAMEKIVNSLLK 441 >gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrosococcus oceani ATCC 19707] gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] Length = 454 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 214/459 (46%), Gaps = 19/459 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L A+QG G +G+S D+RS+ P F A++G +DGH FI A +KGA Sbjct: 8 SLRELTSAVQGRLQGA--NVAASGVSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++ + + +P V D AL +LA R R I+A+TGS GKTT KEM Sbjct: 66 SAALLEQAI-----NDPLPQIEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKEM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + A G+ NN IGVPLTL + F + E+G + GEI +L+ L RP Sbjct: 121 IASVLGWREPVLATRGNLNNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRPQ 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+IT PAHL F ++ +A AK EIF+G+ G LN DD F + + L Sbjct: 181 VALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPCFSYWRDLAGEL--- 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + FG SK+A+ R + S + ++ G H N L Sbjct: 238 PVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATIA 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D +L+ GR + R G L+D++YNANPAS +AA+ +L++ Sbjct: 298 LGVDRQHLSASLAALSSVPGRLQIRR---GIGGMRLLDDTYNANPASFQAALELLAKFP- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R VLGD E+GE + S H + + ++ ++ G +A R +H Sbjct: 354 ---GERALVLGDFAELGEEAASLHRIMGKQARAAGVNRLYTLGRLGAFAAEAFGRGA-LH 409 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + E L +Q L ++VK S +++ +L Sbjct: 410 FLEQRS-LLEVLQEELHPNITLLVKGSRCMRMEQIVAVL 447 >gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] Length = 457 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 146/466 (31%), Positives = 222/466 (47%), Gaps = 34/466 (7%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + I G I + V+G+ IDSR + FFA+ G +GHDF L A + GA VV Sbjct: 9 LSKMINGKIIRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVV 68 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V + + I V +D L AL +A + + R +A+TGS GKTTTK+M Sbjct: 69 VKRE-IEGADCFQIKV---EDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASV 124 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS KT IG++N+ GVPLTL + + + E+GM+H GEI ++ LV P +A+I Sbjct: 125 LSKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVEPDLAMI 184 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + H+ N E I AK EI +GL+K GT+ +N DD FF K + + Sbjct: 185 TNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFF-----KDYTNDEFNVVK 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G + + DF+ S+ + V GK+ + N L + + Sbjct: 240 VGIN-HGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFHFGLN 298 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + L F P G R + G TLID++YN+NP ++K A+ +L++I G Sbjct: 299 YEQIKEGLDDFMP---TGNRMKIEEVNG-ITLIDDTYNSNPEALKEALGLLNRIG--GNN 352 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R++AVLGDM E+GE S+ H + + + +LA D I Sbjct: 353 RKVAVLGDMLELGEKSEEEHEACGKAAAENGVE-------LLLACGDYAMHYIKGAGENG 405 Query: 430 MD---GLFLFIQSSLV--------DGDVVVVKSSNSCGFYRLINLL 464 MD L+ F ++ LV +GD V+VK+S F +++ + Sbjct: 406 MDPGKALYFFEKNYLVEEVFDFLKEGDFVLVKASRGMKFEDVVDAI 451 >gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] Length = 456 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 141/448 (31%), Positives = 221/448 (49%), Gaps = 28/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+S DSR++ + F +KGP+YDGHD++ AV+ GA + +G L +PV Sbjct: 25 INGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAVEHGAAACLSEE----VVGGLPVPVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA R ++A+TG+ GKT+TKEML L+ G++NN Sbjct: 81 QVEDTLQALGELARTIRSGFDGPVLAVTGTTGKTSTKEMLASILAQGSDGLKTEGNFNNL 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTLAR+ + + + ELGMS GEI LT + +P +A+IT + HL+ IE + Sbjct: 141 IGLPLTLARLSDEHRWMVLELGMSQHGEIERLTEIAQPDVALITNVGAGHLAGVGNIEGV 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+F GL+ T +N DD+ L G++ I DF L Q Sbjct: 201 ARAKGELFSGLKAGATAVVNRDDALIAALPIPD---GVRVI---------DFSLTYQTQV 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 S Q ++ V + G H N L + ++ L Sbjct: 249 RATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAAAAHAVGCSLEQIATGLGC 308 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GR + L G T++D+SYNANP SM+AA+SVLS +G +IAVLGDM Sbjct: 309 VKMAAGRLEVR--TLPHG-ATVLDDSYNANPQSMQAALSVLSDWPC--QGTKIAVLGDML 363 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G++SQ+ H +L + + + + LK + + + D + +++ Sbjct: 364 ELGDVSQACHEELGRLAAQRAEQVLCYGDWAAAVLKGVVEQGGQGAICTSHDEILDWLER 423 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D ++VK S ++++ LL + Sbjct: 424 QVREDDCILVKGSRGMRMEKVVHALLAQ 451 >gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] Length = 479 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 144/450 (32%), Positives = 215/450 (47%), Gaps = 24/450 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR + P F A+ G DGHDF A++ GA V+ + +P V Sbjct: 31 VVIDSREVRPGSLFAALPGERVDGHDFARKAIEAGATAVLAARPV--GTADAPVPAIVVP 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV+ A+ LA A R AT++A+TGS GKT+TK+++ L T GS NN IG+ Sbjct: 89 DVIAAMGALARAVVERLDATVVALTGSAGKTSTKDLIAQLLQRRGPTVWTPGSLNNEIGL 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT + E+G G IR+L L P I ++ + AH+ F G E+IA A Sbjct: 149 PLTAMSADEATLHLVLEMGARGKGHIRYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEA 208 Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ E L E+ G LN DD + +++ A +T+ FG++++AD + + Sbjct: 209 KGELVEALPPAEEGGVAVLNADDPLVRAMMSRTKA---RTVL-FGEAEDADVRAGNVRLA 264 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + EV G H N L + L VD ALS + G Sbjct: 265 DGGRPAFTLHTPTGCSEVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALS----EAG 320 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382 + R+R + + T+++++YNANP SM+AA+ L + GRR AVLG M E+G Sbjct: 321 QLSRWRMEVTERSDGVTVVNDAYNANPESMRAALRALVAMGAATPGRRTWAVLGQMAELG 380 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436 E S + H + + N+S + G A D ++ VH S+ + L Sbjct: 381 EESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDMGAKNEGSWGEESVHVSDVRAAVDL- 439 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++S L GDVV+VK+S S G RL LL+ Sbjct: 440 LRSELRPGDVVLVKASRSVGLERLAQALLD 469 >gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] Length = 447 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/438 (31%), Positives = 213/438 (48%), Gaps = 19/438 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V IS D+RS+ + + A+KG ++DGH ++ A+ KGAG VVV ++ +P Sbjct: 25 VTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQD----ALPDCPVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + D L LA R R +IA+TGSVGKT+T+ MLT A G++NN Sbjct: 81 VLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFKLQPGLLATEGNFNND 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T R+ + ELG + EI +L RPHI+++ A AH F G+E + Sbjct: 141 IGVPKTWFRLTDQHQRVLLELGANAQQEIAWLGSFSRPHISLLLNAAEAHTEGFGGLEGV 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K EI + G + LN DD + ++ G + I +FG+ +AD L +K Sbjct: 201 RQGKGEIIDATHSEGGVVLNKDDPAYNRWLKQA---GDRKIVTFGRHSDADVCLLSFKNN 257 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S S + + + V +G HMA N + + LS P+ GR Sbjct: 258 SHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAAATAWLAGVSALDIAQGLSAMQPEPGR 317 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + +++ G LI ++YNANPAS +AAI VL + GE + + GDM E+G+ S Sbjct: 318 MEPVD-SMHGG--ALIHDAYNANPASFRAAIDVLEDL---GE-DTLLIAGDMAELGDESA 370 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H ++ + + I H+W G L + DA H+ E+++ L + + L Sbjct: 371 NLHREVG-LYARGKIQHIWSVGKESLQISDAFGG----HHFESIEELLAMLPAKLETETA 425 Query: 447 VVVKSSNSCGFYRLINLL 464 V+VK S S G R+++ L Sbjct: 426 VLVKGSRSSGLERVVDAL 443 >gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] Length = 476 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 154/485 (31%), Positives = 231/485 (47%), Gaps = 49/485 (10%) Query: 1 MNPLW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P W + ++++A+ G+ + P+ + DSR + P + F+A+KG +DGHDF+ Sbjct: 1 MAPRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPGDLFWALKGERFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 AV++GA VVV + S+ + I V VD+ L AL LA R + A + AITGS Sbjct: 61 HQAVREGASGVVVQREYTISVENRPEIAVIAVDNTLRALGDLAAWWRRQHTAKLAAITGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM L KT G++NN IG+P+TL ++ + E+GM+H GEI Sbjct: 121 SGKTTAKEMTAAILEMENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEMGMNHKGEIA 180 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----- 231 LT + P A I + AHL ++ +A AK E+ I LN DD+ Sbjct: 181 RLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNGDDAVLMKHA 240 Query: 232 ---------FELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 F + K HA+ I+T K F LR W S+ +W +QL Sbjct: 241 TKFDRKFVTFGMKKGNHIHAVNIET----KGLKGIRFDLR-W---SDDTW-PIQLPVS-- 289 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G H +N L I L V+ + L F +G R++C +G L Sbjct: 290 -------GVHNVKNALAAAAIALSLKEPVENIARGLRNFKGVKG---RFQCIPLEGDIIL 339 Query: 342 IDESYNANPASMKAA-ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ID++YNANP++++ A +S L + +GR I LGDM E+GE + S H + ++ Sbjct: 340 IDDTYNANPSALETALLSALKMVDR--DGRLIVGLGDMLELGEAAVSAHREAGSRIAESG 397 Query: 401 ISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 S ++ G H +++ +P S HV SET D L I DV+ +K S Sbjct: 398 ASRLFFMGTHGEHVRNGAIAAGMP-SNHVIISETHDELTANIIRKARPKDVIFLKGSRKM 456 Query: 456 GFYRL 460 F ++ Sbjct: 457 QFEKV 461 >gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 460 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/398 (31%), Positives = 217/398 (54%), Gaps = 46/398 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 + G+ IDS+ I F I DGHD++ A+ GA VAS+ S Sbjct: 33 MQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKEAIDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K++++ LS+ + + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 EEI+ AK EI +GL++ G + N D++ LL K++ L ++ SFG+ D Sbjct: 203 LGSREEISKAKLEIIDGLKEEGLLLYNGDET---LLSRKNNVLVLEC-KSFGEKDTNDLF 258 Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 QL ++ K + +V L GK +++ +G + Q ++ T + Sbjct: 259 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNTIVGIAVGQ-------FYNVPTEKI 310 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ +++ H R++ + FT+I++++NA+P+SMKAAI L +++ + + Sbjct: 311 QDALRQINITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +I V+GDM E+G+ ++++H ++ ++L+ NIS+V+ G Sbjct: 363 KIIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYG 400 >gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus aureus subsp. aureus ST398] Length = 451 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 222/449 (49%), Gaps = 34/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKS-KNADFQL 260 A AK+EI GL+ GT + D+ E+ AK ++G+ T + S + D Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTG 264 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKAL 317 + +E + + +G H +N + + + + + + +K + Sbjct: 265 ISFTINNEHYDLPI-------------LGKHNMKNATIAIAVGHELGLTYNIIYQNLKNV 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+ G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD Sbjct: 312 SL------TGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGD 361 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLF 436 + E+GE S+ HI + L +I ++ G + D+ + + + + D + Sbjct: 362 VLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEV 421 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S L D V+VK S ++N L+ Sbjct: 422 LTSDLKAHDRVLVKGSRGMKLEEVVNALI 450 >gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] Length = 457 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 141/477 (29%), Positives = 234/477 (49%), Gaps = 35/477 (7%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L F ++++A++G N IS D+R I F A+KG +++ +D+I+ A Sbjct: 2 ELLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASV 61 Query: 63 KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG+ L +V+ S + + + V++ AL LA R + +I ITGS GKT+ Sbjct: 62 KGSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++ ALSS K + G++NN +G+PL + + D + E+GMS+ EI L + Sbjct: 122 TKDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFDEIHRLAKV 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P IA+IT I +H+ N E I AK EI + + + +N ++ + +K+ + Sbjct: 182 AKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKENDLLKTVKSNDYK 241 Query: 242 LGIKTIYSFGKSKNADFQLR---------KWKQC--SEQSWMEVQLQGKSMEVVHHGIGY 290 L S G K+ D+ ++ C E+ + + GK H+ + Sbjct: 242 L-----MSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGK-----HNILNS 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +A TLGI + IK LSV R G FT++D+SYNA+P Sbjct: 292 MLAIVAGRTLGIE---YDKLKQGIKNLSV------TSMRLDIVKKDG-FTIVDDSYNASP 341 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 SM+AAI V++ I + R+IA+LG M E+G+ S FH ++AE NI + G Sbjct: 342 DSMRAAIDVINTIKGN---RKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGEF 398 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A K+ I+ +T++ FI ++L D+++VK+S S F ++N L ++ Sbjct: 399 NEAYKEGYNNDINFMAFDTIEDASDFITNNLNKEDIILVKASRSMKFEYIVNKLKDK 455 >gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O46] Length = 452 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 218/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ Sbjct: 311 NVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L D V+VK S ++N L+ Sbjct: 424 TSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Lens] gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Lens] Length = 445 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 214/444 (48%), Gaps = 25/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN I + IP F Sbjct: 20 ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V L AL K+A A R IIA+TGS GKTT KEM+ L + ++A G+ NNH Sbjct: 76 VVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I+ + Sbjct: 134 IGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 A +K EI +GL TG +N DD+ F++ L A K I F AD + Sbjct: 194 ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIAD------KKILRFSSLHPADIYAQDI 247 Query: 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++ + L +E+ G H +N L + + + L+ F Sbjct: 248 RLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +G R Q T+ID++YNAN S+ A+ VLS GR+I V GDM E+G Sbjct: 308 VKG---RMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSGRP----GRKIFVFGDMGELG 360 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A H+ + + L +++ L Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLT 418 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442 >gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] Length = 457 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 225/457 (49%), Gaps = 52/457 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--------------AGLVVVNTDMV 75 + DSR+I P + F A++G +DGH ++L A+Q G AG+VV NT + Sbjct: 25 VGTDSRNIVPGQLFIALRGERFDGHAYVLQALQSGAAAALVAEAQPGMAAGVVVKNTRL- 83 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--- 132 AL +LA R R + AITGS GKTT KEM+ L + Sbjct: 84 ------------------ALGQLAAVWRNRFSIPVAAITGSNGKTTVKEMVASILRAEAG 125 Query: 133 -IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 A G+ NN IG+PLTL R+ + + E+GM+H GEIR+L+ + RP +A++ Sbjct: 126 DSNAVLATRGNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLSQMARPTVALVNN 185 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 AHL +E IA AK EIFEGL G +N DD + L + G I +FG Sbjct: 186 ATSAHLGGLGSVEGIARAKGEIFEGLALEGMAVINADDLYAPLW---TELAGEHDILTFG 242 Query: 252 KSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +K AD + + + +M+ + G + + G+ H +N L + + A Sbjct: 243 LAKMADVTANYELRADTSYVYMKSPIGGIAFNLQVAGL--HNVRNALAASTVAIAMGARP 300 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 ++ K L F +GR ++R + Q +ID++YNANPASM+AAI VL+ P G+ Sbjct: 301 ESIAKGLEAFDGVDGR-LQHRAGIGQAL--VIDDTYNANPASMRAAIDVLAA-RP---GK 353 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 R+ VLGDM E+GE + + H ++ + I+ ++ G L + A H HY +T Sbjct: 354 RLLVLGDMGELGETAAAMHTEIGQYAREAGINGLYTLGDLSLEMSKAFGDPAH-HY-KTP 411 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L + + VV+VK S R++ L++ E Sbjct: 412 EQLVAGLCHEMDANTVVLVKGSRFMRMERVVQLIVSE 448 >gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU121] Length = 453 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 139/447 (31%), Positives = 213/447 (47%), Gaps = 26/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR+I F KG + DGH F+ A++ GAG D+ S ++ P+ Sbjct: 26 IQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLS-ENIEGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL LA A +IA+TGS GKTTTK+M+ L++ K G+YNN Sbjct: 85 WVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLNTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D D I E+GMS EI L+ + P IAVIT I +H+ + E I Sbjct: 145 IGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK+EI GL+ GT + D+ LLK + S G + C Sbjct: 205 AQAKSEITIGLKPNGTFIYDGDEP---LLKPHVEQIQQANCISIGLEQGNSL------VC 255 Query: 267 SEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 S E+ +G + + H +G H +N + + I L +T + Sbjct: 256 SVNE--EIDTEGIAFTINHQQQYELPILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRV 313 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 R +R+ + T+I+++YNA+P SMKAAI LS ++ GR+I VLGD+ E Sbjct: 314 KLTGMRMERHET---EQQVTVINDAYNASPTSMKAAIDTLSNMN----GRKIIVLGDVLE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQS 439 +G+ SQS H ++ L I + G + + + + H+ D L I Sbjct: 367 LGDNSQSMHEEVGSYLQNKQIDQLITFGSEATFIYNTGKQYVDEAHHFNDKDKLISHITQ 426 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + D V++K S +++ L++ Sbjct: 427 IVQPEDKVLIKGSRGMKLEEVVDALIK 453 >gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces albus J1074] gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] Length = 474 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 143/451 (31%), Positives = 214/451 (47%), Gaps = 30/451 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR AP F A G DGHD+ AV+ GA V+ + +P VD Sbjct: 31 VVIDSRLAAPGSLFAAFAGERADGHDYAATAVETGAVAVLATR-------PVGVPALVVD 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV AL LA A R T++A+TGS GKT+TK+++ L+ + T GS NN IG+ Sbjct: 84 DVERALGALARAVVERLGTTVVALTGSAGKTSTKDLVAQLLTRVAPTVWTPGSLNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT R D + E+G +G IR+LT L P I V+ + AH+ F G E+IA A Sbjct: 144 PLTALRAEADTRHLVLEMGARGIGHIRYLTGLTPPRIGVVLNVGSAHIGEFGGREQIAQA 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+ E L + G LN DD + + +++ A + +FG++ AD + + +E Sbjct: 204 KGELVEALPEDGVAILNADDRYVRDMASRTKA----RVVTFGEAPEADIRAENVR-LTEN 258 Query: 270 SWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 L S +V G H N L + S L VD +ALS Sbjct: 259 GRPAFTLHTPSGCGDVTMRLYGEHHVSNALAAAAVASELGMPVDEIAQALSEAESL---- 314 Query: 328 KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI---AVLGDMCEMG 382 R+R + + T+++++YNANP SM+AA+ L + G AVLG M E+G Sbjct: 315 SRWRMEVTERPDGVTIVNDAYNANPESMRAALRALVAMGGARRGEGGRTWAVLGQMAELG 374 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLF 436 + + + H + + N+S + G + A + VH S+ + L Sbjct: 375 DEALTEHDAVGRLAVRLNVSKLVAVGGREAAWLQMGAYNEGSWGEESVHVSDAQAAVDL- 433 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++S L GDVV+VK+S S G ++ LL + Sbjct: 434 LRSELRPGDVVLVKASRSVGLEKVAAALLAD 464 >gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] Length = 426 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 216/437 (49%), Gaps = 28/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R + + FFA+KGP+++G+ F A++ GA VVV+ V + VD Sbjct: 16 VTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQDDRYVL----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L +LA R I+AITGS GKTTTKE++ +S KTYA +G+ NNHIG+ Sbjct: 72 DVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNLNNHIGI 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL M ++FGI E+G +H EI V P+ +I + AHL F G E + Sbjct: 132 PLTLLAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLINNVGKAHLEGFGGFEGVKKG 191 Query: 210 KAEIFEGL-EKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L E G F+N ++ E+ ++ L +G +N+DF K+ + Sbjct: 192 KGELYQYLFETNGIAFINSKNEHLMEMSPFEAPVL-------YG--RNSDFYNAKFLKSD 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + G V +G + N+L L I A +A+ + P R Sbjct: 243 PFVAF---IAGNEELVETKLVGDYNFDNILAALCIGKYFGVPSIAANQAIEQYDPTNNRS 299 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N+ +I +SYNANP SM+AAI + + ++ +LGDM E+GE S+ Sbjct: 300 QIVKTEKNE----VILDSYNANPTSMRAAIENFASLQKE---NKVVILGDMYELGEESEV 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H ++ +L+L + + L G ++ A A Y +T + F+ S+ + + Sbjct: 353 EHANIGALLNLLTDTKIILIGKNMAA---ASKECTAAAYMDTKEAAVNFLVSNQILNSTI 409 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S G L+ LL Sbjct: 410 LLKGSRGMGLESLMPLL 426 >gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 442 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/362 (34%), Positives = 183/362 (50%), Gaps = 23/362 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G S+D+R+ + +FA++GP++DGHDFI AV+K A +VV G L +P Sbjct: 25 GWSVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVER-AYGVPGELVVP---- 79 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL L AR T+I +TGS GKTTTK+ + L+S +G++NNH+G Sbjct: 80 -DTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLASEMPVGKTVGNFNNHVG 138 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL+L R+P G+ E+GM+H GEIR L + RP I V+T + AH+ F IE IA Sbjct: 139 VPLSLLRLPDGCRAGVIEMGMNHSGEIRELGAIARPEIGVVTNVGYAHVEFFDSIEGIAL 198 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ EGL G LN DD A I +FG S++A ++R + Sbjct: 199 AKRELIEGLTPDGVAVLNADDPRVAGFSAVHPGRSI----TFGLSEHA--EIRAEDVAAH 252 Query: 269 QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + G E G+ G H N+L + + ++ A++ F + RG Sbjct: 253 AGGTRFRALGMEFET---GLSGRHAVMNLLAAIAVATVFGIAPARMRDAVASFAAGKMRG 309 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +R + ++ YN+NP + ++ I VL + RRIAVLG+M E+G + Sbjct: 310 ER----TEHNGIVIWNDCYNSNPEAAQSMIDVLRETPAR---RRIAVLGEMLELGHAADE 362 Query: 388 FH 389 H Sbjct: 363 LH 364 >gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosomonas eutropha C91] gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosomonas eutropha C91] Length = 457 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 213/452 (47%), Gaps = 34/452 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR++ P + F A+ G +DG FI A++KGA +V+TD V V Sbjct: 26 GVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMVSTDTVIVPTKSDFGWIKV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSYNN 145 +D +LA R ++A+TGS GKTT KEM+ A G+ NN Sbjct: 86 NDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGNVLATTGNLNN 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP L ++ + E+GM+H GEI +L+ L P IAVIT AH+ + E Sbjct: 146 DIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAVITNAGTAHIEHLGTTEA 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EIF GL G +N DD++ +L + G + I FG + A + ++ Sbjct: 206 IARAKGEIFTGLGAQGIAIINADDAYAQLWR---QLAGSRQILDFGITNPAAIRAQQMSS 262 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 SE +W+ +QL +E+ G H N L + + + L F G Sbjct: 263 SSEAAWL-LQLPDDKVEITLQVPGRHNIYNALAAAAAATAAGISTTSIAEGLHNFMGTPG 321 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ + L Q LID++YNANP SM+AA++VL+++ G++I ++GDM E+G + Sbjct: 322 RLQK-KVGLYQSI--LIDDTYNANPDSMQAALNVLAEMP----GKKILIMGDMGELGTDA 374 Query: 386 QSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 FH + + +L+L +S ++GF A Y +D L Sbjct: 375 AGFHYTIGQQAAKAGIDALLALGELSQQTVAGFGSGA-----------QYFADLDTLLEK 423 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + L V+VK S R+I L + + Sbjct: 424 AKDCLGKNVSVLVKGSRFMRMERVIEQLQDRY 455 >gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 452 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 31/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S P+ Sbjct: 26 INGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID-ENVSGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+YNN Sbjct: 85 WVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + E I Sbjct: 145 IGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 A AK+EI GL+ GT + D+ E+ AK ++G+ T D L Sbjct: 205 AKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGVAT----------DNALV 254 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + K H+ +G H +N + + + L +T + L Sbjct: 255 CSVDDRDTTGISFTINNKE----HYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLK 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G R + T+I+++YNA+P SM+AAI L ++ GRRI +LGD+ Sbjct: 311 KVSLT---GMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT----GRRILILGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFI 437 E+GE S+ HI + L +I ++ G + D+ + + + + D + + Sbjct: 364 LELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L D V+VK S ++N L+ Sbjct: 424 INDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mollicutes bacterium D7] gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. D7] Length = 450 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 215/444 (48%), Gaps = 19/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G S DSR + I G YDGHDFI A GA ++ TD + I V Sbjct: 23 ITGFSQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNGASAII--TDRL--IEDDKHVVI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VD+ L AL K+A R K ++ ITGSVGKT+T++M+ + KT G+YNN+ Sbjct: 79 LVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVVKQQYKTLKTEGNYNNN 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ D + I E+GM+HL E+ L+ + P I+ IT + AH+ E I Sbjct: 139 IGLPLTILRLK-DEEVMILEMGMNHLNEMEELSRIACPDISAITNVGTAHIGELGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EI G+ T+ +N D+ ++ + + G A F+ K Sbjct: 198 LKAKLEIVAGMSDGSTLVINGDNDMLSTVRFDNFK-----VVKVGVDCAAVFKAEKVILM 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S + GK +VV G H N L+ + I L ++ I+ +S F E Sbjct: 253 DDHSEFTINYNGKVYQVVVPVPGNHFVLNALVAIAIGINLEIPMEKCIQGISQF---ELT 309 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 KR + TLID +YNA+ SMK++I VL+ S R+IAVL DM E+GE S+ Sbjct: 310 KKRMDVIELKNNITLIDGTYNASEDSMKSSIDVLATYSR----RKIAVLADMLELGEFSE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H + + ++ I + G + D AL ++Y + +++++L + Sbjct: 366 QLHRSVGKYVAEKQIDVLVAVGREAKFMSDSAALSGMAEIYYCNNNQEVVNYLKNNLQND 425 Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468 DVV++K SN ++ + E+F Sbjct: 426 DVVLLKGSNGMKLKDVVTKIEEKF 449 >gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] Length = 462 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 216/431 (50%), Gaps = 20/431 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVF 86 + D+R + + F + G + DGH FIL A++ GA + + D+ + + PV Sbjct: 30 VDFDTRKLVKESLFVPLIG-NNDGHQFILKAIENGARASLWSKSLKDLPFEVAA-DFPVI 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA + ++ ITGS GKTTTK+M LSS + + G++NNH Sbjct: 88 QVEDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMTDAVLSSQYRVHKTQGNFNNH 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P+T+ MP+D + I E+GM+H GEI+ L+ L P +A+IT I +H+ F I Sbjct: 148 IGLPITILEMPIDTEVVILEMGMNHAGEIKVLSDLAEPDVAIITMIGESHIEFFGSRAGI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265 A AK EI GL++ G + ++ LL+ + L K + +FG + D + L Q Sbjct: 208 ADAKMEISSGLKENGVLIYPGEEP---LLQERVTFLTDKQLKTFGTAAENDLYPLNIDAQ 264 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ S+ + M + +G + N L L +L + + L+ F + Sbjct: 265 MNQTSF--TTNETPDMTISLPVLGTYNVNNALAALMAGIVLGVPIQKSAPKLAKFQLTKN 322 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +N +++++YNANP +MKA + S EG++I +LGDM E+GE S Sbjct: 323 R-TEWLVGINGS--RILNDAYNANPTAMKAVLDNFSTF--ENEGKKIVILGDMLELGEHS 377 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSL 441 H+ + E L+ I V L G + L ++L + +++ + L + + Sbjct: 378 SELHLSIKESLNPNQIKKVILYGEEMSVLYESLQETFANDNLFYFTGDKEPLIQLAKEQI 437 Query: 442 VDGDVVVVKSS 452 GD V++KSS Sbjct: 438 EPGDYVLIKSS 448 >gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] Length = 452 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 185/364 (50%), Gaps = 14/364 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+RS++P + F A+ G HYDG+ F+ AV GA + + + A+I P VD Sbjct: 27 VCTDTRSVSPGDLFVALAGDHYDGNQFVSDAVIAGAVAAITSEAVTAAI-----PSVKVD 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL ++A R R ++A+TGS GKTTTKEM+ L + A ++NN IGV Sbjct: 82 DTRFALGQIARLNRRRFSGPVVALTGSAGKTTTKEMVARILCERGEVLATEANFNNEIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + F + E+G SH+G+I +LT P IAV+T H+ F IE +A Sbjct: 142 PLTLLAIDPSHQFAVVEMGASHIGDIAYLTQFAEPTIAVLTNAMAVHIEGFGSIEAVAKT 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EIFE L + G +N D+ FF+ ++ + T + S N + Q + Sbjct: 202 KGEIFENLPEGGVAIINQDEPFFQQWLQQAGKASVVTFSKYDTSANY-YASNIHIQTNAS 260 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + E+ L +++ + +G H N + A VD K L P +GR K Sbjct: 261 TVFELHLAQQTITIKLALLGEHNVLNAVAAAAAAMTAGATVDDVKKGLESVRPVDGRLK- 319 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 A T+ID++YNA+P S+ AAI VLS S GRR +LG M E+G L++ H Sbjct: 320 ---ASADSNRTVIDDTYNASPGSVMAAIDVLSGFS----GRRCLILGTMAELGGLAEKSH 372 Query: 390 IDLA 393 D+A Sbjct: 373 RDVA 376 >gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Halanaerobium praevalens DSM 2228] Length = 465 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 190/377 (50%), Gaps = 34/377 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85 V I IDSR + F AI G + DGH ++ AV+ GA V+V+ + A + ++ V Sbjct: 26 VKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGASAVIVDRNSPAIQAAYPNLSV 85 Query: 86 FGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---G 141 V+D AL +A R + +I ITGS GKTTTK+M+ S + + Y C+ G Sbjct: 86 LKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAGKTTTKDMI---FSVLSEKYYCLKTEG 142 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNN IG+PLTL R+ DF I E+GMS L EI L + P I +IT IA AHL Sbjct: 143 NYNNQIGLPLTLLRLDGREDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLG 202 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E IA AK E+ + L T LNYD+ + + + S A +TIY FG K AD ++ Sbjct: 203 SLENIAQAKKELIDNLTAADTAILNYDNQYTKKIGTNSKA---QTIY-FGFEKGADARIE 258 Query: 262 KW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALS 318 + +E E Q K+ + + + G H N+L L I A K L Sbjct: 259 NYFFNSKTETLKFEFTYQAKNYKFIFNKAGKHNLYNILPALII----------AFKYKLK 308 Query: 319 VFHPKEGRGKRYRCALNQGFFTL------IDESYNANPASMKAAISVLSQISPHGEGRRI 372 ++G K +L F L I++ YNANP S+KAA+ VL QI R+I Sbjct: 309 PEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALDVLEQIKAK---RKI 365 Query: 373 AVLGDMCEMGELSQSFH 389 A+L M E+GE S H Sbjct: 366 AILASMLELGEKSLKKH 382 >gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] Length = 430 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 214/438 (48%), Gaps = 24/438 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R+I P FFA+KG +++G++F A+ KGA + +V+ + A I V Sbjct: 15 GVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDNYI---FV 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L AL +LA R ++AITGS GKTTTKE++ L+ KT + G+ NNHIG Sbjct: 72 EDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL RM + G+ E+G +H GEI FLT + P IT AHL F GIE + Sbjct: 132 VPLTLLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYITNFGKAHLEGFGGIEGVIK 191 Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L+ +FLN DD + + SH +++FG S+ A + + Sbjct: 192 GKSELYTHLKNHKKLLFLNLDDEIQQRQDSYSH------VFTFGSSEKAAVSIDYTISQN 245 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGR 326 + G +T+G+ + + AIK S P R Sbjct: 246 GPEYASFTYNNDVFNTQLTGQYNAYNAAAALTIGLYFKVPFKAIKEAIKEYS---PSNNR 302 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + N TL+ ++YNANP SM ++I S ++ + ++GDM E+G+ S+ Sbjct: 303 SQIQKTKNN----TLLLDAYNANPTSMGSSIINFSNLNT--PLSKTLIIGDMLELGQYSK 356 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + E+ + + +V+L G H K+ + + T + L F+ ++ ++ Sbjct: 357 EEHQSIVELCNSKGLKNVYLVGKH---FKETSTPEEYQKFDNTTE-LKTFLTANPINNSY 412 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S ++I L Sbjct: 413 ILIKGSRGIALEKIIENL 430 >gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii DPC 6026] Length = 455 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 219/459 (47%), Gaps = 29/459 (6%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ LS + Sbjct: 74 --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM H G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F ++IA AK EI + L++ G N D+ E AK K + + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239 Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 F R+ + +S+M ++ G + + IG H N L + + + + Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +AL+ F P R + + + + ++D+ YN+NP ++KA + Q+ GRR Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVEDGGRR 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426 IAVLGDM E+G+ S H LA L I+ ++L G + L DAL ++H + Sbjct: 357 IAVLGDMLELGDESADLHASLATSLDPAIINELYLYGPEMKNLYDALVDKYPAENLHYYP 416 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC3088] gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC3088] Length = 449 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 23/399 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ G++ DSR + + F A KG DGHD++ + A +V + I Sbjct: 24 YIQGLNFDSRHVQSGDLFVAFKGDKADGHDYV-----EAARARGAVAALVERWVPVEITQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL + A + R S AT + ITGS GKTT K + LS+ T A G+YNN Sbjct: 79 IRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKTTVKSTVAHILSAQGATSATQGNYNN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL + + F + E+G G+I +L LV P++ ++T + PAH+ F I+ Sbjct: 139 EIGVPLTLLELGPEDQFAVVEMGARFKGDIAYLCALVEPNVRILTAVLPAHMETFGSIDV 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA K EIF+G++ T + D + + ++ I +FG S+ D Q+ Sbjct: 199 IAQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTRAAG----KIVTFGYSEANDIQI---LD 251 Query: 266 CSEQSWMEVQLQGKS----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S++ + + L+ ++ EVV +G H A N+ ++G +DT + ++ Sbjct: 252 VSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAASVGACLACGMSLDTIVAQVASVQ 311 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR R + TL+D+SYNA+P +M+ A++ L + SP G R+A+LG M E+ Sbjct: 312 AVQGRLARI---ILSDKTTLVDDSYNASPEAMRQALAALER-SP---GARLAILGPMAEL 364 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G S +H + E +++ +WLSG L D+ R Sbjct: 365 GVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDSRLR 403 >gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] Length = 452 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 187/367 (50%), Gaps = 20/367 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG- 87 G+S DSR++ P + F A+ G +DGH FI A++ GA +V+ D + P FG Sbjct: 24 GVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAILP---TQPDFGW 80 Query: 88 --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 V D L +LA + R R ++A+TGS GKTT KEM+ ++ A G+ Sbjct: 81 IKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGLENVLATTGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN IGVP L ++ + E+GM+H GEI +L+ L P IAVIT AH+ Sbjct: 141 LNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAAPTIAVITNAGTAHIEYLGT 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AK EIFEGLE+ G +N DD L + G + + F + A R+ Sbjct: 201 TEAIARAKGEIFEGLEEQGVAIINADDPHARLWR---QLAGNRPVVDFSMNGTAAVSARQ 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 S W+ +QL ++E+ G H N L + + + L F Sbjct: 258 PAHPSGDRWL-LQLPDDTIEITLQVPGRHNVYNALAAAAAATAAGISTSSIAEGLHSFRG 316 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GR ++ + LN+ LID++YNANP SM+AA++VL+++ G++I ++GDM E+G Sbjct: 317 VPGRLQK-KTGLNRSV--LIDDTYNANPDSMQAALNVLAEMP----GKKILIIGDMGELG 369 Query: 383 ELSQSFH 389 + +FH Sbjct: 370 ADTATFH 376 >gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 458 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 17/451 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLS 82 + G+S DSR++ P + A+ G DGHDF+ A GA L +V+ D+ S + Sbjct: 12 LTGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAH 71 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V VDDV A++ LA A R KA I+ +TGSVGKTTT+ ++ L+S + G+ Sbjct: 72 AAVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGN 131 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN +G+P TL + + + E+GM LG+I L + RP VIT + +HL Sbjct: 132 FNNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSHLERLGT 191 Query: 203 IEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHAL--GIKTIYSFGKSKNADFQ 259 + IA AKAE+ EGL + G FL D + + + + A+ GI+ + G ++N+D Sbjct: 192 RDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTAENSDVY 251 Query: 260 LRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + +G+S G H N + +D ALS Sbjct: 252 ATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALDQVAAALS 311 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P+ GR R ++GF + D++YNA+P SM AA++VL+ S GRRIAVLGDM Sbjct: 312 GVEPESGRQALKRS--SRGFL-VFDDAYNASPESMAAALNVLASFSAS--GRRIAVLGDM 366 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G HI+ + + I + G + DA + S Sbjct: 367 GELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRYIADAARKGGMAVKSVIEVADADAAA 426 Query: 439 SSLVD----GDVVVVKSSNSCGFYRLINLLL 465 ++++D GDVV+VK+S+ G R++ ++ Sbjct: 427 TTVLDIAQPGDVVLVKASHFMGLDRVVERVV 457 >gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 519 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 161/507 (31%), Positives = 236/507 (46%), Gaps = 56/507 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50 M P+ T + +A+QG I VPQ G +G DSR + F AI G Sbjct: 7 MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 63 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-- 108 DGHDF+ A + GA + +V ++ A + + +P D LG L K +AAR + Sbjct: 64 VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAAGTPF 121 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+G Sbjct: 122 TLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN D Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 241 Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 D+ F A A + GKS + S+ + Sbjct: 242 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G + V G H N L + +L + + + LS ++ R +R A++ Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 357 Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H Sbjct: 358 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 417 Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435 + E + I V G H AL AL + + VH+ +D Sbjct: 418 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 477 Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460 +++ D D VV++K S++ G L Sbjct: 478 LVRALAGDHDDTVVLLKGSHASGLSAL 504 >gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc argentinum KCTC 3773] Length = 441 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 145/471 (30%), Positives = 236/471 (50%), Gaps = 52/471 (11%) Query: 9 DLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 D+L A IQG G V G+S +SR + P + F A+ + DGH +I A+Q+GA Sbjct: 10 DILNADIQG-------SGQVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAA 61 Query: 68 VVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V+ D+ + ++ +P D L AL +L R ++AITGS GKTTTK+M Sbjct: 62 VLVDDQHDIPNDVPAVIVP-----DTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKDM 116 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ KT+ ++NN IGVP+TL MP D + + ELGM G++ L+ LV P Sbjct: 117 TAAVMAKRYKTFKTPENFNNEIGVPMTLLTMPADTEVLVVELGMDRPGQLTALSKLVVPD 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+IT I AH+ F +IA AK EI GL+ G + + +D+ + A + Sbjct: 177 VAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLCIPFDEPLL------TQADVAQ 230 Query: 246 TIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG +A +++ + L G GY++ N L + Sbjct: 231 QVVVFGDGVSAVQGDATTTTFTYQETRFAIPLIG----------GYNI-MNALAAVSAGI 279 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363 +L D+D A++AL F + R +R A LI + YN+NP ++ A ++ L I Sbjct: 280 LLHIDLDDAVEALQTFDLTKNRTERLVTARG---VNLISDVYNSNPTAVAAVLATLKAIP 336 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---- 419 +PH + VLGDM E+GE + + H +LA+ + N++ V+L G L + P Sbjct: 337 APH----KYVVLGDMLELGEQAATLHANLAKEILAANVTGVYLVG--QLFTANTAPILAP 390 Query: 420 --RSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S H+H +T +D L +++ GDV+++K+S+ ++N L++ Sbjct: 391 HFDSEHLHLYDTHQLDALIADLKTLGDAGDVILLKASHGIHLENVVNALVQ 441 >gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] Length = 513 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 161/507 (31%), Positives = 236/507 (46%), Gaps = 56/507 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50 M P+ T + +A+QG I VPQ G +G DSR + F AI G Sbjct: 1 MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 57 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-- 108 DGHDF+ A + GA + +V ++ A + + +P D LG L K +AAR + Sbjct: 58 VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAAGTPF 115 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+G Sbjct: 116 TLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN D Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235 Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 D+ F A A + GKS + S+ + Sbjct: 236 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 295 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G + V G H N L + +L + + + LS ++ R +R A++ Sbjct: 296 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 351 Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H Sbjct: 352 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 411 Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435 + E + I V G H AL AL + + VH+ +D Sbjct: 412 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 471 Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460 +++ D D VV++K S++ G L Sbjct: 472 LVRALAGDHDDTVVLLKGSHASGLSAL 498 >gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] Length = 459 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 135/376 (35%), Positives = 199/376 (52%), Gaps = 33/376 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N ++ D+RS+ P + F A++G ++DGH F+ A ++GA VV+ A + +P Sbjct: 29 NAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDCIDAA----VDLPQLL 84 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L AL +LA R S AT+IAITGS GKTT +EM L + G+ NNHI Sbjct: 85 VSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQQMGPALITQGNLNNHI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + FG ELG S L EI + +V+P +A++T AHL F + I Sbjct: 145 GVPLTLFGLAPEHRFGAIELGASGLNEIAYTVAMVKPQVAILTNAGQAHLEGFGSYQNIV 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI +G+ G + LN DD F+ ++ + ++ G + AD+++ Sbjct: 205 LAKGEIIDGVADDGLVVLNRDDPAFDQWLVRAGRRRVASVSRAGHA-GADYKV------I 257 Query: 268 EQSWMEVQLQGKSMEVVHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKA-----LSV 319 + +VQ+ G + +G H N M L A + IKA L+V Sbjct: 258 AGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELGA-TNEHIKAGLEQVLAV 316 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDM 378 +G+ + L QG +TLID+SYNANPAS+KAA++VL++ SP RIAVLG M Sbjct: 317 ------KGRLHIQPLAQG-WTLIDDSYNANPASIKAALAVLAKRPSP-----RIAVLGAM 364 Query: 379 CEMGELSQSFHIDLAE 394 E+GE + H ++A+ Sbjct: 365 AELGEQAAQLHREVAQ 380 >gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 459 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/470 (28%), Positives = 234/470 (49%), Gaps = 20/470 (4%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P +T ++ +A + + F + I D+R I P F A KG ++G DF+ AV+ Sbjct: 2 PAFTLDEVREATGAQLYKMEHEEFTD-IVTDTRKITPGVLFLAFKGERFNGEDFVRDAVE 60 Query: 63 KGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+V+T A + L V +D L A +LA A R+R ++AITGS GKTT Sbjct: 61 KGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++ LS+ +YNN IG+PLTL + + + E+GM L +I + + Sbjct: 121 TKDLTAAVLSARGPVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEAMAPI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P + ++T + H+ IE IA AK+E+ E + GT+ LN D+ + +++++ Sbjct: 181 AAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRSQARE 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 G++ + +FG K AD +R ++ E ++ +++ +G+ +G H N Sbjct: 241 -GVR-VLTFGIEKEAD--VRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHNVYNA 296 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + L T +A S + R+ + + +I+++YNA+P SMKAA Sbjct: 297 LAAIAAGFALGL---TPAEAASGLRNLKATKMRFEVQ-DVKTYHVINDAYNASPMSMKAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I LS+++ +GR+IAV+GDM E+G +S+ H ++ L+ + + V G + D Sbjct: 353 IETLSELT---KGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVTRGQMGAFIAD 409 Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V +++ + ++ L GD ++ K S ++I+LL Sbjct: 410 GAEEGGVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKIIDLL 459 >gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] Length = 458 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 23/441 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R+I + F A+KGP++DGH+++ A +KGA +V T +L +P + V Sbjct: 30 INTDTRAINHGDVFIALKGPNFDGHNYLDVATRKGAAAAIVETPNT----NLDLPQWCVG 85 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +L +A+R + +I +TGS GKTT K ML S T A G+ NNHIGV Sbjct: 86 DSYKALGELGLASREKFNGKVIGVTGSCGKTTVKGMLAAICSLAGSTVATRGNLNNHIGV 145 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL+L R+ + F + E G S EI++L L++PH+A++ I P H+ F +E IA Sbjct: 146 PLSLMRLANEHQFAVIEAGTSGPNEIKYLAELIQPHVAIVNNIMPVHVEGFGSVEAIAID 205 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQC 266 KA ++ GL + G LN + L AL K I F + A+ +++ +Q Sbjct: 206 KAHLYRGLVEGGVGVLNVASAQQPTL---LDALQGKKITRFNPELTDEAAEVRVQNIEQD 262 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++ ++G+ +E+ +G H N L + V+ + L + +G Sbjct: 263 TFGRAEFSAIIEGEEVELKLGVLGAHNVANALAAASAARAVGISVELIKRGLEKYTGDKG 322 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + R +N+ T+ID++YNA+P S+KAAI +Q R VLGDM E+GE+ Sbjct: 323 RMQLAR--VNEK-LTVIDDTYNASPGSVKAAIDYAAQFE-----RSAIVLGDMGELGEMR 374 Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S H ++ I +W +G + P + E + + SS V Sbjct: 375 NSAHEEIGRYAQQKQIKQLWCTGEASRFTAQGYGPHAKWFEDKEQLKQALPMLCSSEV-- 432 Query: 445 DVVVVKSSNSCGFYRLINLLL 465 VV+VK S S +++N LL Sbjct: 433 -VVLVKGSRSTRMEQIVNALL 452 >gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] Length = 455 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 26/374 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+SIDSR+I + F A+ GP +DGHD++ KGA +V ++ S ++P Sbjct: 26 DGVSIDSRAIKAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVADS----TLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL +L R + A+TGS GKTT KEML L + +A G+ NN + Sbjct: 82 VKDTRQALGQLGALNRAAFTKPVAAVTGSSGKTTVKEMLASILRTRGSVHATRGNLNNDL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + + ELG S LGEI + L +PH+A++ AH+ F G E+I Sbjct: 142 GVPLTLLELAPEHSAAVIELGASRLGEIAYTVGLTKPHVAILNNAGTAHVGEFGGPEKIV 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI EGL G LN DD F + K + A G K + + ADF Sbjct: 202 EAKGEIIEGLAADGVAVLNLDDKAFGIWKTR--AAGRKVLTFALSNTQADFH-------- 251 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S + +G +H G Q N+L T + + + A +S+F G Sbjct: 252 -ASDLATDARGCPAFNLHSPEGVERVQLNLLGTHNVANAMAAAAAAHALGVSLFGIATGL 310 Query: 327 GK------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 G R L + +ID++YNANP SM AA+ +L+ S GR + VLGD+ E Sbjct: 311 GAVQPVKGRTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGFS----GRTVLVLGDIGE 366 Query: 381 MGELSQSFHIDLAE 394 +G+ ++ H D+ E Sbjct: 367 LGDWAEQGHRDVGE 380 >gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] Length = 466 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 195/372 (52%), Gaps = 22/372 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR++ E F A+ G +DG F+ +A +KGA ++ D + S PV V Sbjct: 24 GVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAEPAGLSGDFPVIRV 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM----LTIALSS-------IKKTY 137 D L +LA R R +I +TGS GKTTTKEM L +A S ++ Sbjct: 84 QDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASDNAIINDPAERVL 143 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A G+ NN IGVP L R+ + + E+GM+HLGEI +LT L RP+IAVIT AH+ Sbjct: 144 ATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLARPNIAVITNAGAAHI 203 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +E +A AKAEI GL+++GT N DD + L + G + I FG ++ A Sbjct: 204 EGLGSVEAVARAKAEILVGLDQSGTAIFNADDRYASLWR---ECAGAREIIDFGLTEKAR 260 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + ++++L ++EV G H N L + L + + L Sbjct: 261 VSA-VYRLGRLVNTLQLRLPDATVEVKLQAPGVHNIYNALAAAAVAWSLGIKKEWIVAGL 319 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F GR ++ +C L+ LID++YNANP S++AA++VL+ EG++I VLGD Sbjct: 320 ERFQSVHGRLQK-KCGLHHA--VLIDDTYNANPESVRAALAVLAAA----EGKKILVLGD 372 Query: 378 MCEMGELSQSFH 389 M E+G+L+ H Sbjct: 373 MGELGQLAIDLH 384 >gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] Length = 519 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 160/507 (31%), Positives = 237/507 (46%), Gaps = 56/507 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50 M P+ T + +A+QG I VPQ G +G DSR + F AI G Sbjct: 7 MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 63 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKA 108 DGHDF+ A + GA + +V ++ A + + +P D LG L K +AAR + + Sbjct: 64 VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRTVGTPF 121 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+G Sbjct: 122 TLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN D Sbjct: 182 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 241 Query: 229 DSFFELLK-------------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 D+ + A A + GKS + S+ + Sbjct: 242 DAHVATMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G + V G H N L + +L + + + LS ++ R +R A++ Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 357 Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H Sbjct: 358 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHE 417 Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435 + E + I V G H AL AL + + VH+ +D Sbjct: 418 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 477 Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460 +++ D D VV++K S++ G L Sbjct: 478 LVRALAGDHDDTVVLLKGSHASGLSAL 504 >gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU144] Length = 451 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/441 (32%), Positives = 213/441 (48%), Gaps = 17/441 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+SIDSR I F KG + DGH FI A+ GAG V + S G+ P+ Sbjct: 26 INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-PII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ LS+ K G+YNN Sbjct: 85 WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL + D + I E+GMS +I L+H+ +P IAVIT I +H+ + E I Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ LLK + + + S G + ++ + Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVK 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +E + E H I G H +N + + I L + + Sbjct: 262 NEG----IHFTINQKEHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R+ + N T+I+++YNA+P SMKAAI LS + +GR+I +L D+ E+G S Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444 Q H + E L NI ++ G + D+ + Y + D L + S + Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPE 430 Query: 445 DVVVVKSSNSCGFYRLINLLL 465 D V+VK S +++ LL Sbjct: 431 DKVLVKGSRGMKLEEIVDALL 451 >gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 469 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 217/465 (46%), Gaps = 41/465 (8%) Query: 23 PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V ++ DSR P F A+ G DGHD+ L AV+ GA V+ + Sbjct: 23 PEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYALSAVKAGAAAVLATR-------PV 75 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P VDDVL A +L + A I+AITGS GKT+TK+++ L + + A Sbjct: 76 GVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITGSAGKTSTKDLIAQLLPAAGRVVAT 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 S+NN IG+PLT++ D+ + E+G +G IR LT + PHI+V+T + AH+ Sbjct: 136 PESFNNEIGLPLTISMADPSTDYLVLEMGARGIGHIRDLTRIAPPHISVVTNVGTAHIGE 195 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-- 257 F G ++IA AK EI E L +G LN DD + A++ A + SFG S A Sbjct: 196 FGGRDKIAVAKGEIVEALPASGLAVLNADDPLVLAMAARTTA----RVSSFGLSDEATVR 251 Query: 258 --------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 F + + + V LQ V + + A L + I AD Sbjct: 252 ATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSNSL-AAAAVAREAGLSVADI--AD 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +A A S + R + T+++++YNANP SM++++ L+ ++ E Sbjct: 309 LLSAATARSRW--------RMEVSARADGVTVVNDAYNANPDSMRSSLEALATMARGPEQ 360 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHV 424 R IAVLG M E+G S++ H + + + ++ + +G+ A A V Sbjct: 361 RAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIVFVGGEEAGWMRQAAAAAGAGGRAV 420 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 H + D + +L GDVV+VK+S RL LL+ P Sbjct: 421 HVPD-QDAALQHLSDTLRAGDVVLVKASRGIQLQRLAERLLQPDP 464 >gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] Length = 470 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/453 (30%), Positives = 212/453 (46%), Gaps = 20/453 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 PQ +N +S D+R F A+KG +D HDFI A+ +GA V+ + Sbjct: 23 PQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPL-----DEQ 77 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V+D AL L A + IAITGS GKTT KEML + A G+ Sbjct: 78 TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAIIGQQYNVLATAGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ + + ELG +H GEI + T L RP +A++ ++ AH+ F Sbjct: 138 FNNDIGVPLTLLRLEAQHQYAVVELGANHAGEIAYTTSLTRPDVAILNNVSAAHVEGFGS 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +A AK EIF+GL + G Y+ + + + K + +FG S+ AD + + Sbjct: 198 VHGVAKAKTEIFQGLPEDGLAITPYESEYLPCWR---NVRAGKRLQTFGLSEQADVRASQ 254 Query: 263 WKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + S Q ++ + + V G H +N L + + L+ Sbjct: 255 IELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAALEVGMSAEEIATGLANVA 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR + N T+ID++YNA+ AS KAA+ +L +G I VLGDM E+ Sbjct: 315 PVKGRLTPMQLTEN---VTVIDDTYNASVASTKAALDLLGSY----QGTTIMVLGDMAEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFLFI- 437 G ++++H D+ + IS + G + + H+S +D + I Sbjct: 368 GAEARAYHEDVGDHAIQAGISKFFTLGVLSQSASEVFNGRGGKHFSSFATLVDEILQTIT 427 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Q S+ + V+VK S S R++N L E + + Sbjct: 428 QRSVSEHVTVLVKGSRSSHMERVVNALQEHYKS 460 >gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] Length = 433 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 213/423 (50%), Gaps = 28/423 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DL + ++G + I V +IDSRS F +KG + DGH +I A++K + Sbjct: 5 DLAKVVEGKILNIEEDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYIEDALKKWSVGY 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + G L V D AL K+A+ R +S T++ ITGS GKT+TKE+L Sbjct: 64 LTEKPLNFKNGIL------VKDTYQALKKIAIYKR-KSIDTVVGITGSSGKTSTKELLNF 116 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS+ KTYA G+YNN IGVPLTLA P + I E+G +G+I +L ++V P I V Sbjct: 117 VLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIEMGAGKVGDIDYLNNIVNPDIGV 176 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + ++ AH+ F E I K EIF +Y F+LL L K Sbjct: 177 LVSVGHAHVEKFGSFENIIKGKGEIFNT--------SHYHVLPFDLLNYYKDKL--KKFI 226 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +FG+ N ++ K E + +V + + +++ + +N+ G++ L Sbjct: 227 TFGEEGN--IKVYDIKIIPEGTTGKVAYKNQVLDLTIPIFNKGIFKNIGAVAGVLYHLGL 284 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D ++K L F+ +GRGK + G T+ID+SYNANP S+K AI L++I Sbjct: 285 DPIESLKVLKEFNQIQGRGKIIKI----GNLTIIDDSYNANPLSVKNAIETLNEIPT--- 337 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 ++ VLGDM E+GE S+ H +A+ + +I +V+L G +K L +V +++ Sbjct: 338 -VKVLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFLYGEETKYIKQELEGKKYVLHTD 396 Query: 429 TMD 431 + Sbjct: 397 KKE 399 >gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 24/370 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R++ E F A+KGP++DGH FI A QKGA V+V + + IP F V Sbjct: 27 INTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVQHKV-----DVDIPQFIVS 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A + IAITGSVGKTT KEM LS A G++NN IGV Sbjct: 82 DTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ F + ELG +HLGEI + T + +P +AV+ +A AHL F + +A A Sbjct: 142 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265 K EIF+GL+ G +N D F + K +K F ++ D W + Sbjct: 202 KGEIFDGLKDDGVAIVNCDSEFSQYWLDKLEGRNVK---CFSTTEKLDI----WAENITL 254 Query: 266 -CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ + + K + V G H N L+ + S ++ AL+ + Sbjct: 255 DANARASFTLCTKNKQVPVTLALPGKHNISNALIAAALTSEFDVTLEEIANALATMGDVK 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + T++D++YNAN S+KAAI +LS + +G RI LGDM E+GE Sbjct: 315 GRVNLIEVS---DLLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGED 367 Query: 385 SQSFHIDLAE 394 ++ +H ++ E Sbjct: 368 ARKYHQEVGE 377 >gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 442 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 226/447 (50%), Gaps = 32/447 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+S DSR + + F A+ + DGHD++ A+ KGA V+V D I S IP Sbjct: 22 IVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLV--DDRHQIDS-KIPA 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L AL +L R + ++AITGS GKTTTK+M + + S KT+ ++NN Sbjct: 78 IIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMASAIMGSQYKTFKTPENFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL MP D + + ELGM LG++ L+ LV P IA+IT I AH+ F E Sbjct: 138 EIGVPLTLLTMPDDTEVLVVELGMDRLGQLTTLSELVSPDIAIITMIGEAHIEFFKTREN 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI +GL+ GT+ + YD+ + K + + +FG+ ++ Sbjct: 198 IAKAKLEITKGLKSQGTLLIPYDEPLLTNAQVK------QNVQTFGQD------IKDINS 245 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S ++ Q ++ + +G + N L + +L ++ A +AL F + Sbjct: 246 SSSKTIFTYQNTRFAIPL----LGRYNIMNALAAISAGILLHIELKNAAEALQHFDLTKN 301 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ + LI + YN+NP ++ A ++ L +I P + VLGDM E+GE + Sbjct: 302 RTEQLTTSHG---VNLISDVYNSNPTAVAAVLATL-KIIP--ATHKYVVLGDMLELGEQA 355 Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPR---SIHVHYSET--MDGLFLFIQS 439 H LAE + N+ V+L G L L R S H+H ET + L +Q+ Sbjct: 356 ARLHACLAETVINANVDGVYLVGPLMNKYLYPILQRRFDSAHLHQYETDQLAELIKDLQT 415 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 +GDV+++K+S+ ++N L++ Sbjct: 416 LGENGDVILLKASHGIHLENVVNALVK 442 >gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] Length = 467 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/446 (31%), Positives = 222/446 (49%), Gaps = 19/446 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + D+R + P F + G DGH +I A+ GA + + D A S + V Sbjct: 27 ITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSAD-PAQAPSDDLAVV 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL LA R ++ +TGS GKTTTK+M + L + + + G+YNN Sbjct: 86 FVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHKTQGNYNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL +MP D + E+GMS GEI+ L+ + +P IA IT I +HL I Sbjct: 146 IGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLSEIAQPDIAAITLIGESHLEFLGSRAGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIY--SFGKSKNADFQLRKW 263 A AK EI GL+ G + ++ E S I + IY SFG + +AD Sbjct: 206 AQAKLEILYGLKPNGVLLYPANEPLIE-----SEMPEIDQPIYLRSFGFTDHADAFAYDM 260 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++++ + L+ ++ +G + N L+ L + +L ++ AI L+ F Sbjct: 261 VEEVDRTYFKTNLE-PNVTCTIPVLGAYNVSNALIALSVAELLDVPLEQAIFQLANFQLT 319 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + +QG L++++YNA+P S+ A + L+ ++ RRIAVLGD+ E+GE Sbjct: 320 ANRLE--WLTTHQG-ARLLNDAYNASPTSVLAVLKSLAALNLAPGQRRIAVLGDVRELGE 376 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSETMD--GLFLFIQ 438 S H LA+ L+ + V+L G + +L + L + H+ Y E D L +Q Sbjct: 377 ASAQLHRSLAQGLAPESFERVYLFGPEIASLYETLQDRYEASHLFY-EPADHSRLIAQLQ 435 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + L D D+V+VKSS +++ L Sbjct: 436 ADLTDKDLVLVKSSFGTDLLQVVTAL 461 >gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Leuconostoc gasicomitatum LMG 18811] gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 441 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 229/452 (50%), Gaps = 38/452 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 G + G++ +S+ + + F A+ + DGH++I +A+ GA V+V+ V + I Sbjct: 19 NGLITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKHVINT---KI 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P VDD L AL +L R + TIIAITGS GKTTTK+ML +++ +T+ ++ Sbjct: 75 PAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPENF 134 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL MP + + + ELGM G++ L+ LVRP +A+IT I AH+ F Sbjct: 135 NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAMITMIGEAHIEFFKTR 194 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 IA AK EI GL+ G +F+ +D+ + A+ + + FG+ N Sbjct: 195 ANIARAKLEIVSGLKSDGVLFIPFDEPLL------TEAIVQRQVILFGQGVN------NI 242 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + S+ + Q ++ ++ GY++ N L + +L D+ KAL F Sbjct: 243 EAFSDHTMFVYQNTQFAIPLIG---GYNI-MNALAAISAGILLHIDLKKVAKALQTFDLT 298 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMG 382 + R +R A LI + YN+NP ++ A ++ L I +PH + VLGDM E+G Sbjct: 299 KNRTERLVTARG---VVLISDVYNSNPTAVAAVLATLKAIPAPH----KYVVLGDMLELG 351 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--------RSIHVHYSETMDGLF 434 + + H +L + + + V+L G L K+ P H + ++ +D L Sbjct: 352 DQANKLHANLGQKVLDSGVDGVYLVG--PLLNKNMAPIIQAHIDSVDFHQYATDQLDQLR 409 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L +Q+ GDV+++K+S+ ++N L++ Sbjct: 410 LDLQTLGEKGDVILLKASHGIHLETVVNALMK 441 >gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF [Bifidobacterium bifidum PRL2010] gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum PRL2010] Length = 513 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 161/507 (31%), Positives = 237/507 (46%), Gaps = 56/507 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISI-------DSRSIAPQEAFFAIKGPH 50 M P+ T + +A+QG I VPQ G +G DSR + F AI G Sbjct: 1 MMPM-TVRQVAEAVQGRLI--VPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGER 57 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKA 108 DGHDF+ A + GA + +V ++ A + + +P D LG L K +AAR + + Sbjct: 58 VDGHDFVARAGESGAVVALVQHEVDAPVAQIVVP--DTVDALGLLAKANIAARRAVGTPF 115 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+G Sbjct: 116 TLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN D Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235 Query: 229 DS-------------FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 D+ F A A + GKS + S+ + Sbjct: 236 DAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 295 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G + V G H N L + +L + + + LS ++ R +R A++ Sbjct: 296 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLS----RQSRISPHRMAVS 351 Query: 336 Q----GF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H Sbjct: 352 TVRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHE 411 Query: 391 DLAEVLSLYNISHVWLSGF---HVLALKDALPR------------SIHVHYSETMDGLFL 435 + E + I V G H AL AL + + VH+ +D Sbjct: 412 GIGEYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADT 471 Query: 436 FIQSSLVDGD--VVVVKSSNSCGFYRL 460 +++ D D VV++K S++ G L Sbjct: 472 LVRALAGDHDDTVVLLKGSHASGLSAL 498 >gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 458 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + P+ Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPK 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 D-RVKAYDSKEELIKELQAVVDAKDVVLVKASRGMKLEEVITML 457 >gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU045] Length = 451 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/441 (32%), Positives = 213/441 (48%), Gaps = 17/441 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+SIDSR I F KG + DGH FI A+ GAG V + S G+ P+ Sbjct: 26 INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKHSEGNQG-PII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ LS+ K G+YNN Sbjct: 85 WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL + D + I E+GMS +I L+H+ +P IAVIT I +H+ + E I Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ LLK + + + S G + ++ + Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVK 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +E + E H I G H +N + + I L + + Sbjct: 262 NEG----IHFTINQKEHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R+ + N T+I+++YNA+P SMKAAI LS + +GR+I +L D+ E+G S Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444 Q H + E L NI ++ G + D+ + Y + D L + S + Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPE 430 Query: 445 DVVVVKSSNSCGFYRLINLLL 465 D V+VK S +++ LL Sbjct: 431 DKVLVKGSRGMKLEEVVDALL 451 >gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] Length = 458 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/464 (29%), Positives = 227/464 (48%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ S + ++ + ++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQSTGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLG 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + P+ Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457 >gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] Length = 461 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 150/471 (31%), Positives = 235/471 (49%), Gaps = 33/471 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A QG I + + GIS DSR + E F +KG YDG DF+ A+ KGA V Sbjct: 8 EIVRATQGKLIKGSLKDKIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAV 67 Query: 69 VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D + + + V+D L AL+K+A R + +A+TGS GKTTTK+M+ Sbjct: 68 LTARLDNIEYLKDFPFNIIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GMS GEIR L ++V+P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------AKSHA 241 V T I AH+ E I AK E+ E ++ I LN DD LLK +K + Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDM--LLKILQQYSSKYYR 245 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMT 299 GIK+ G+ K D + + +E L+ K++E + I G H N L Sbjct: 246 YGIKS----GEIKACDIE-------KGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + DVD +AL F P GK + +G +ID++YNANP SMKAA++V Sbjct: 295 ICVGLEFGVDVDDMAEALKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415 L R+IAVLGDM E+GE + H ++ ++++ +I + SG + K Sbjct: 351 LRDFPGK---RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNTSKYIAEESK 407 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + + ++ + +GD+++VK S +++ L E Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQE 458 >gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] Length = 460 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 14/384 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S D+R+I + + G ++GH F+ A QKGA V+ S+P Sbjct: 27 VSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWAE--AEGTPPESVPAI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA R + ++ +TGS GKTTTK+M+ LSS + G+ NNH Sbjct: 85 VVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIAALLSSQYRVQKTEGNLNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + D + E+GMS GEI LT + RP+ AVIT I AHL E I Sbjct: 145 IGVPLTLLALEEGTDIAVVEMGMSGFGEIEQLTTIARPNAAVITNIGEAHLQELGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK- 264 A AK EI GL+ G + D+ EL+ + + + +FG+ ++ D+ + Sbjct: 205 AKAKLEILSGLQGDGLFVYHGDEPLLAELVPSLPLP---QHVVTFGEGEDNDYYPTTVRI 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + S++ +L +++ + +G H N L + + + ALS Sbjct: 262 EAAGTSFVINELPRQTLFIPV--LGKHHVYNALAAIAVARFFGVSWENIAAALSRLQVTR 319 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + FT+I+++YNA+P SM+AA+ +L+++ G ++IAVLGDM E+G+ Sbjct: 320 MRTEVVKTKRG---FTVINDAYNASPTSMRAALMLLTELD--GYRKKIAVLGDMLELGDK 374 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 FH + E+L + +V+ G Sbjct: 375 EVEFHQAIGEMLRPEMVDYVFTYG 398 >gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] Length = 458 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 144/446 (32%), Positives = 222/446 (49%), Gaps = 27/446 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S D+R+I + ++G ++GHDF+ AVQKGA V+ +PV Sbjct: 27 VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKGAAAVLWAER--EGTPPEGVPVV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA R + +I +TGS GKTTTK+M+ LS+ + G+ NNH Sbjct: 85 VVDDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + + E+GMS GEI LT + RP AVIT I AHL E I Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264 A AK EI GL G +F+ + D LL + L + + + +FG + D+ + Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRI 261 Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319 + S++ L G++ M V +G H N L + + D +D ++ L V Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHYVYNALAAIAVARFFGIDWEGIDASLSRLQV 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R + FT+I+++YNA+P SM+AA+ +L ++S G ++IAVLGDM Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLF 436 E+G+ +FH ++ EVL + +V+ G H+ A V + L Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSHHIAAAAAPFFDDGRVREFDDKAALAEA 429 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++S D+V++K+S L+ Sbjct: 430 VRSVATSDDIVLLKASRGMKLEELLR 455 >gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] Length = 452 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 220/452 (48%), Gaps = 35/452 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G ID+R++ + FFA+ G DGH+F+ A + GA VV + + +P Sbjct: 24 VKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVER----YLEDVDLPQC 79 Query: 87 GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL LA R + T +A+TGS GKTT KEML LS++ T A G++NN Sbjct: 80 VVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGSTCATQGNFNN 139 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G+PLTL R+ + F + E+G S GEI +LT + +P +A++ PAHL F I Sbjct: 140 DLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVAKPDVALVNNAGPAHLDGFKDISG 199 Query: 206 IASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +A K EI+ GL + G +N DD ++ L A KT+ SFG +AD Q + Sbjct: 200 VARGKGEIYNGLGEKGIAIINADDIHADYWRSLCAD------KTVVSFGLENSADVQ-GQ 252 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 W S+ + +Q+ G ++ I G H A+N + + D+D K L Sbjct: 253 W--SSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAVALAAGVDLDAVEKGL 310 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-LSQISPHGEGRRIAVLG 376 S P G R +G F LID++YNANPAS+ A I V L P LG Sbjct: 311 SKVRPVAG---RMVPMTARGGFYLIDDTYNANPASLMAGIDVALDMQRPV-----WLALG 362 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435 D+ E+G+ S++ H L E + + ++ G K+A R ++ + L Sbjct: 363 DLAELGDNSETVHAQLGEQVQQRGVQRLFTLGEQS---KNAAERFGEGAAAFDSPEALAQ 419 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I++ V++VK S S R++ LL EE Sbjct: 420 QIETLATRDVVLLVKGSRSSRMERVVRLLSEE 451 >gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 468 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 224/453 (49%), Gaps = 29/453 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G++ DSR + + F + G + DGH +I A++ GA + +D + Sbjct: 28 PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 85 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139 +PV V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KT+A Sbjct: 86 LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLSTQFNVTKTHA- 144 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P +AVIT I AH+ Sbjct: 145 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + IA AK EI GL++ GT N D+ + +AK + +T FG Sbjct: 203 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 258 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q+ + L + + +G + N L L + A +A++ Sbjct: 259 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 317 Query: 320 FHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F P E R + YR ++ + YN+NP + + ++ + + +G+RIAVLG Sbjct: 318 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 369 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431 DM E+GE S + H+ LA L I+ V+L+G H+ AL + L ++H + ++ Sbjct: 370 DMLELGEQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 429 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L + +++ D V++K S+ +++ L Sbjct: 430 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 462 >gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] Length = 468 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 200/432 (46%), Gaps = 42/432 (9%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W L QA QG+ P+G + I DSR +AF A+KG +D HDF+ VQ+ Sbjct: 14 WDASQLQQATQGYWHNNRQPEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V + I L V D AL L R + K +IA+TGS GKTTT Sbjct: 74 GCQVAIVEQPLDVDIFQLI-----VSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + LV Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRPEHQYAVMELGASHQGEIDYTSKLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A I I AHL F G + I AK+EI++ + GT L DD F + +K A+ Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAVDGTAILPADDDFTDQIK---QAI 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYH 291 + + SFG Q E V L +S E H G H Sbjct: 246 QTQKMLSFG-------------QDGEIYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEH 292 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 QN L + D++ ++ LS +GR + G ID++YNANP Sbjct: 293 NVQNALAATAFALAIGIDLNNIVQGLSAAQGAKGR----LNFIQHGHHLFIDDTYNANPG 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AA VL+Q + G ++ V GD+ E+G+ S H L L+ + ++ G Sbjct: 349 SMRAAAGVLAQQT----GIKVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIVAVGEFA 404 Query: 412 LALKDALPRSIH 423 A++ S H Sbjct: 405 GAMQQGAASSDH 416 >gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] Length = 458 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + P+ Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457 >gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + P+ Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457 >gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus coahuilensis m4-4] Length = 456 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 215/447 (48%), Gaps = 21/447 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+G+ ID+R + F KG + DGH F+ ++KGAG + A +PV Sbjct: 26 LVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKGAGAAF--WEKSAGPAPEGLPV 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL L+ A R ++ +TGS GKTTTK++L LS+ + + G+YNN Sbjct: 84 IVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDILFALLSTKYRVHKTEGNYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ +P D + + E+GMS GEIR LT + P A+IT I +HL + E Sbjct: 144 HIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I+ AK EI EGL+ G N D+ LL+ + G + +FG+ + K Sbjct: 204 ISKAKFEIVEGLKSEGLFVYNGDEP---LLQERVKGYG-GSKETFGRHSSNTMYPTKLAP 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + V + S E H I G H N + + I K LS Sbjct: 260 SGFGTTFSVNV---SDEEFHLPILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLT- 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G R + T+I+++YNA+P+S KAAI +L IS G+R V+ DM E+G Sbjct: 316 --GMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTIST--TGKRYFVVSDMLELGPN 371 Query: 385 SQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 ++FH ++ ++ +I V LS F K+ LP +H+ E L +++ Sbjct: 372 EEAFHHEVGTYVT-DDIDCVLTYGPLSSFIAEGAKETLPEDRVIHFDEK-SALIAYLKVV 429 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 + D V+VK+S ++ L +E Sbjct: 430 VKSDDTVLVKASRGMKMEEVVLALQKE 456 >gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 451 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 217/465 (46%), Gaps = 29/465 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W D+ +A H I G++IDSR + + F KG + DGH F+ A++ G Sbjct: 12 WISCDIDEAYLEHQI--------KGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG S S+ P+ VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 64 AGASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + G+YNN IG+PLT+ ++ D + I E+GMS EI L+ + P Sbjct: 123 MIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ K H + Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEPLL-----KPHVENV 237 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLG 301 K N + L + S+ + + K H+ +G H +N + + Sbjct: 238 KNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKE----HYELPILGIHNMKNATIAIA 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I L D +T K +S R +R+ NQ T+I+++YNA+P SMKAAI LS Sbjct: 294 IGHELGLDYNTIQKNISNVQLTGMRMERH-VTDNQ--ITVINDAYNASPTSMKAAIDTLS 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 H GR+I VL D E+GE SQ H D+ L I + G + + Sbjct: 351 ----HMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQF 406 Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V Y + L +++S L D V++K S ++N L+ Sbjct: 407 VEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451 >gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Planctomyces brasiliensis DSM 5305] gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Planctomyces brasiliensis DSM 5305] Length = 473 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 208/403 (51%), Gaps = 19/403 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + Q + G S G P V G SIDSR++ P + F+A+ G + DGH F+ A +KGA Sbjct: 15 TLQKITQQLCGRSAG-SPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQFVTAAFEKGA 73 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV+ + G P V+DV AL + + R +A +I +TGSVGKTTT++M Sbjct: 74 AAAVVSQPVTREAG----PCIQVEDVAAALAEASFEHRNSLEALMIGLTGSVGKTTTRQM 129 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS A ++NN +GVPL+L + ++ + E+G S GEI L LV+P Sbjct: 130 LHAVLSKAYTGTASRENFNNRLGVPLSLLGISEADEYAVIEMGASAQGEIGALGELVQPE 189 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++T IAPAHL F IE + S K+E+F+ L ++G L ++ + H+ Sbjct: 190 IALLTQIAPAHLDGFGSIEGVISGKSELFDNLPESGLAVLPEHLYVMPAIRRRIHS---- 245 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + G+ +AD L + S Q ++ + G S + + G H A + + + I Sbjct: 246 RVLTVGQGPSADICLNNIRLDSGQ--LKFECDGDSFRM--NAPGKHFASSAGLCVAIARE 301 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L L F P EGR C G +T++D++YNA+P SM A + L Q S Sbjct: 302 LGLTTAQIQAGLENFSPVEGRC----CRRMIGDWTVLDDTYNASPISMSAGLVSLLQTSV 357 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 G RIA+LGDM +GE ++ +H L + ++ I ++ + G Sbjct: 358 SGP--RIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYLLVYG 398 >gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] Length = 450 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 25/464 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + G I P N DSR + + F+A+KG +DG+ F+ +AV GA Sbjct: 6 TLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNAVDAGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V + I + + V++ L AL LA R RS ++AITGS GK+TTK+M Sbjct: 66 SALVADKFFADKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKSTTKQM 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L + A +G+ NN G+P +L + FG+FELG S G+I + P Sbjct: 126 LLSICKTSGPARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDILEIGKPTLPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+IT ++ AHL F ++ + K E+ + L G + N DD+ + LK + I Sbjct: 186 VAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLKTEYKGKAI- 244 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--HMAQNMLMTLGIV 303 SFG AD Q++ K +E +G EV + + H N Sbjct: 245 ---SFGFKSGADLQIKNKKN------LEFVYKG---EVFSFDLQFEKHNKLNAAAAAAGA 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D K L+ + R + + G I + YNANPASMK AI++L++ Sbjct: 293 IALGLYKDNIEKGLAAYEAMPMRMEERKI----GNVDFILDCYNANPASMKNAITLLAK- 347 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 G R+AVLGDM E+G S +H LA++L I +++LSG + A +AL Sbjct: 348 --RKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFLSGPEMAAAAEALKTKNP 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + YS ++ L +G ++K+S S + ++++ L Sbjct: 406 AAKLKYSLEYKDWAQDLKEVLKNGGTCLIKASRSMNYEKILDCL 449 >gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] Length = 454 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 219/446 (49%), Gaps = 24/446 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR++ P E F A+KG ++DGHD+ AV+ GA VVV+ ++ S + VF V Sbjct: 22 GVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVSHEV--SGLPAGVAVFMV 79 Query: 89 DDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 +D L A +LA A RLR + + AITGS GKT+TK++L LS G++NN I Sbjct: 80 EDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLLAACLSCKYNVVKTQGNFNNEI 139 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+P TL + D D + E+GM LG+I L + P +IT + H+ +E I Sbjct: 140 GLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIAEPDSGLITNVGETHMELLGSMENIG 199 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK+EI L + G LN D+ + K+ A K +Y FG +N DF+ Sbjct: 200 KAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKA---KVVY-FGLGENCDFRGSDIVTSG 255 Query: 268 EQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + G+++ V IG H N L I V A+ A ++ + Sbjct: 256 AGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSA--IAGAFCYGVPMAVSAQALATARL- 312 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGE 383 G R + G T I+++YNA+PASM+AA+ L++ + HG+ R IAVL DM E+G+ Sbjct: 313 TGSRQEI-VYIGDITFINDAYNASPASMEAALKTLAEAKKAAHGKARTIAVLADMLELGD 371 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHV-HYSETMDGLFLFIQ 438 +S+ H + + V G + D +S H E D L L Sbjct: 372 ISEDAHRRVGRWAVENGVDFVLTYGPQAAYIADEAAELGGKSKHCADRQEAADALRLMAS 431 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + GD++++K S+S +++ L Sbjct: 432 A----GDIILLKGSHSMQVDKMLELF 453 >gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 442 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 226/447 (50%), Gaps = 32/447 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+S DSR + + F A+ + DGHD++ A+ KGA V+V D I S IP Sbjct: 22 IVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLV--DDRHQIDS-KIPA 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L AL +L R + ++AITGS GKTTTK+M + + S KT+ ++NN Sbjct: 78 IIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMASAIMGSQYKTFKTPENFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL MP D + + ELGM G++ L+ LV P IA+IT I AH+ F E Sbjct: 138 EIGVPLTLLTMPDDTEVLVVELGMDRPGQLTTLSELVSPDIAIITMIGEAHIEFFKTREN 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI +GL+ GT+ + YD+ + K + + +FG+ ++ Sbjct: 198 IAKAKLEITKGLKSQGTLLVPYDEPLLTNAQVK------QNVQTFGQD------IKDINS 245 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S ++ Q ++ + +G + N L + +L ++ A +AL F + Sbjct: 246 SSSKTIFTYQNTRFAIPL----LGRYNIMNALAAISAGILLHIELKNAAEALQHFDLTKN 301 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ + LI + YN+NP ++ A ++ L +I P + VLGDM E+GE + Sbjct: 302 RTEQLTTSHG---VNLISDVYNSNPTAVAAVLATL-KIIP--ATHKYVVLGDMLELGEQA 355 Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPR---SIHVHYSET--MDGLFLFIQS 439 S H LAE + N+ V+L G L L R S H+H ET + L +Q+ Sbjct: 356 ASLHACLAETVINANVDGVYLVGPLMNKYLYPILQRRFDSAHLHQYETDQLAELIKDLQT 415 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 +GDV+++K+S+ ++N L++ Sbjct: 416 LGENGDVILLKASHGIHLENVVNALVK 442 >gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 460 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 150/446 (33%), Positives = 218/446 (48%), Gaps = 33/446 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+RSI E F A+KGP++DGH FI A Q GA V+V + + IP F V Sbjct: 27 INTDTRSICSGEVFLALKGPNFDGHKFIAQAKQNGAIGVIVQHKV-----DVDIPQFIVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A + IAITGSVGKTT KEM LS A G++NN IGV Sbjct: 82 DTRLALGIIGGAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ F + ELG +HLGEI + T + +P +AV+ +A AHL F + +A A Sbjct: 142 PLTLLRLEPQHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---C 266 K EIF+GL+ G +N D F + K L + + F S+ D W + Sbjct: 202 KGEIFDGLKDDGVAIVNCDSEFSQYWLDK---LDGRKVTRFSSSEKLDI----WAENISL 254 Query: 267 SEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 E + L K+ ++ V + G H N L+ + S ++ AL+ + Sbjct: 255 DENARASFTLCTKNAQIPVKLALPGKHNISNALIAAALTSEFDVTLEDIANALATMGDVK 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + T++D++YNAN S+KAAI +LS + +G RI LGDM E+GE Sbjct: 315 GRVNLINVS---DLLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGELGEE 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLV 442 ++ +H ++ E I+ ++ G D LP H+S + + IQ+S+ Sbjct: 368 ARQYHQEVGEYALEQGINELFTLGVLSRYASDVYGLPNR---HFS-NREQMLQQIQTSIK 423 Query: 443 DGD---VVVVKSSNSCGFYRLINLLL 465 D +VVK S S L+ L+ Sbjct: 424 KVDKKTTIVVKGSRSSRMELLVTDLV 449 >gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 443 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 224/446 (50%), Gaps = 32/446 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ +SR + + F A+ DGH ++ A+ +GA V+V+ + S +P Sbjct: 24 VTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDALDRGAAAVLVDDNHAIS---EKLPAI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +LA R + +IAITGS GKTTTK+M +S++ KT+ ++NN Sbjct: 80 IVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTKDMTAAIVSTVFKTFKTPNNFNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL MP D + + ELGM G++ L+ LV+P IA+IT I AH+ F I Sbjct: 140 IGVPMTLLSMPEDTEVLVVELGMDRSGQLTMLSQLVQPDIAIITMIGEAHIEFFKTRANI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G +F+ +D+ + A+ ++ + FG++ +A Sbjct: 200 AKAKLEITNGLKADGVLFIPFDEPLL------TQAVIMQRVVWFGQNIDA---------- 243 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + K+ IG + N L + +L D+ A++AL F + R Sbjct: 244 VETASDHTNFIYKNTRFAIPLIGGYNIMNALAAISAGILLHIDLKKAVQALQTFDLTKNR 303 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R A +G LI + YN+NP ++ A ++ L I + VLGDM E+GE + Sbjct: 304 TERLVTA--RGVI-LISDVYNSNPTAVAAVLATLKAIPAQ---HKYVVLGDMLELGEQAN 357 Query: 387 SFHIDLAEVLSLYNISHVWLSG--FH---VLALKDALPRS-IHVHYSETMDGLFLFIQSS 440 H L + + N+ V+L G F+ LK S +H + ++ + L L +Q+ Sbjct: 358 ELHAGLGQKVLDANVDGVYLVGKLFNQNMAPMLKTQFESSDVHQYTTDQLAKLTLDLQTL 417 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 GDV+++K+S+ ++N L+E Sbjct: 418 GEAGDVILLKASHGIHLENVVNALIE 443 >gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 455 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/428 (32%), Positives = 215/428 (50%), Gaps = 27/428 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GISID+R+I + F +G H +GH ++ A +KGAG + D IP+ Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGAGASLWQKDEPNPPDG--IPLL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL ++A A RL KA I ITGS GKT+TK++L L+ K IG++NN Sbjct: 82 FVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+P+T+ ++ D + + E+GMS GEI FLT L +PH+ VIT I AH+ + I Sbjct: 142 LGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGI 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI +G++ G +F + D+ + L AK + +FG + N + Sbjct: 202 AQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHI---NAVAFGLEPDNLLYADHIHAN 258 Query: 266 CSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S+ ++G V +G H +N L+ + I + L + + +L + Sbjct: 259 ANGSSFTTHGMIEGDFFISV---LGKHQVKNTLIAMLISNQLGLNNEQIRTSLEHVVLTD 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMCEMG 382 R ++ + N F I+++YNA P S+KAAI + S I P + VLGDM E+G Sbjct: 316 MRMQQVQGT-NGALF--INDAYNAAPTSVKAAIQFIATSTIRP----EKWLVLGDMLELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--------HYSETMDGLF 434 Q FH LAE ++ I +V L G + L + L Y+ ++ L Sbjct: 369 PDEQRFHEGLAEYINEQEIDYVCLFGARMTHLYEVLKEDFEADRLLYTEDDYTAIIEKLE 428 Query: 435 LFIQSSLV 442 L +SS+V Sbjct: 429 LANESSIV 436 >gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 458 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V T V + + ++PV V+D L AL LA R + +I +TGS GKT+T Sbjct: 65 A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+ A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237 Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I +FG ++ D+ + + ++ + +++ +G H N L ++ Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + L G R T+I+++YNA+P +M+AA +++ Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417 + G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P V + + L +Q+ + DVV+VK+S +I +L Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457 >gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] Length = 458 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 227/465 (48%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + P Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457 >gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] Length = 458 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SID+R I + I+G +DGH F+ A++ GA + ++ ++IPV Sbjct: 27 VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA + R + +I +TGS GKT+TK+++T L++ K G++NNH Sbjct: 85 FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT I AHL + + I Sbjct: 145 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G N D+ + S L +TI +FG ++ ++ Sbjct: 205 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 262 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ ++ Q +++ +G H N L ++ I + + L Sbjct: 263 ATGTYFKMN-QDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 319 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 376 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 FH ++ +++ IS+V+ G Sbjct: 377 QFHYEVGKLIDPARISYVFTYG 398 >gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces bingchenggensis BCW-1] Length = 480 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 220/468 (47%), Gaps = 26/468 (5%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 Q H I + + IDSR + P F A+ G DGHDF AV GA V+ + Sbjct: 16 QPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAARAVADGAVAVLAARPV 75 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 A+ +P V DV AL LA A LR AT++A+TGS GKT+TK+++ L Sbjct: 76 PAAAADAPVPSIVVPDVQAALGALARAVVLRLDATVVALTGSAGKTSTKDLIAQLLRRHG 135 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T GS NN IG+PLT + E+G G IR+LT L P + ++ + Sbjct: 136 PTVWTPGSLNNEIGLPLTAMSADETTRHLVLEMGARGKGHIRYLTDLTPPRLGLVLNVGT 195 Query: 195 AHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 AH+ F G E IA AK E+ E L + G LN DD + ++ A +T+ FG Sbjct: 196 AHIGEFGGREAIAEAKGELVEALPAAAEGGVALLNADDPLVRAMATRTKA---RTVL-FG 251 Query: 252 KSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 ++ +AD + + S+ G S EV G H N L + L Sbjct: 252 EAADADVRAENVRLADGGRPSFTLHTPTGCS-EVTMRLYGEHHVSNALAAAAVAHELGMS 310 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHG 367 VD ALS + G+ R+R + + T+++++YNANP SM+AA+ L + G Sbjct: 311 VDEIAVALS----EAGQLSRWRMEVTERRDGVTVVNDAYNANPESMRAALRALVAMGTAG 366 Query: 368 E---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + GR AVLG M E+GE S + H + + N+S + G A D ++ Sbjct: 367 QAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDMGAKNEGS 426 Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH S+ + L ++S L GDVV+VK+S S G R+ LLE Sbjct: 427 WGEESVHVSDVRAAVDL-LRSELRPGDVVLVKASRSVGLERVAQALLE 473 >gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] Length = 460 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 33/456 (7%) Query: 22 VPQGFVNG-----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DM 74 VP +G + DSR+I P F A+KG +DGH F+ A++ GA VV+ + Sbjct: 13 VPMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVSEVPEG 72 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSI 133 VA+ + +P D L A ++A RL K T+IAITGS GKT+TK+ + L Sbjct: 73 VAADRCVVVP-----DTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGER 127 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + ++NN IG+P TL + D + + E+GM LG+IR + H+ P AVIT + Sbjct: 128 YRVIKTQANFNNEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVG 187 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E IA AK+EI E FLN DD +++ + ++++G Sbjct: 188 DTHLELLGSLENIAKAKSEILEDFTPKNHAFLNGDDPRVSVMETGA------AVHTYGID 241 Query: 254 KNADFQLRKWKQCSEQSWMEV-----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +AD K + S V ++ G + +V IG H N L + + + Sbjct: 242 SDADV---KAVEISADGLRTVFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGV 298 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHG 367 + L G R L+ G T+I+++YNA+PASM+AA+ L + G Sbjct: 299 PDAAIARGLENLKMT---GMRQEI-LHFGPVTVINDAYNASPASMEAALRTLGDVVKSQG 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHY 426 +GR IAVL DM E+G SQS H + S Y ++ + G + +A ++ + VHY Sbjct: 355 KGRAIAVLADMLELGAHSQSGHAQVGTWCSQYGVTELVCYGPESRFMAEAAQKAGVPVHY 414 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++ + + DVV++K S+ ++LI+ Sbjct: 415 AQDRGEAARVLARLVRPDDVVLLKGSHGMEVFKLID 450 >gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare] Length = 415 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 130/424 (30%), Positives = 220/424 (51%), Gaps = 25/424 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I+P F A+KG +Y+ ++F A+ KGA V+++ + + + V+ Sbjct: 16 VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDEN---KMLLVN 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L AL +LA R + IIA+TGS GKTTTKE++ + LS KT A IG+ NNHIGV Sbjct: 73 NSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D D I E+G +H EI L + P IT AHL F GIE + Sbjct: 133 PLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFGGIEGVIKG 192 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ L+ T F+N DDS E K+ + + +S +K A+ + K + Sbjct: 193 KSEMYTYLKTHNKTAFVNLDDSIQE---EKTQHIN-RYTFSTDNNKKANIIINKIEA--- 245 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +++++ G +E+ + IG + + N+ + + I + +A+ + P R + Sbjct: 246 NPFVKIKYNG--IEIQSNLIGIYNSNNINVAISIGTYFNVSEQDIKQAIENYIPANNRSQ 303 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +G +I ++YNANP+SM AAIS Q+ +G +IA LGDM E+GE S + Sbjct: 304 ----LIEKGNNKIILDAYNANPSSMAAAISNFQQL----DGSKIAFLGDMFELGEESLTE 355 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + E + + + + G + + K H+HY + + F+ + + ++ + ++ Sbjct: 356 HKKIIESILNHTSINFYFIGKNFYSSK---IEKEHIHYYTSFED-FVENKPNGINNNTIL 411 Query: 449 VKSS 452 +K S Sbjct: 412 IKGS 415 >gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] Length = 454 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 135/411 (32%), Positives = 204/411 (49%), Gaps = 26/411 (6%) Query: 4 LWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L T D+L A + G + I + +S D+R++ F A+ G +D HDF+ A Q Sbjct: 6 LTTLQDVLNAELIGQDVTI------DAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQ 59 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +V+ + + +P V D AL +L + + IA+TGS GKTT Sbjct: 60 NGASAL-----LVSKVVDIDLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTV 114 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL 181 KEML LS +T G++NN IGVPLTL R+ P D D+ + ELG +H+GEI + T L Sbjct: 115 KEMLAAILSQKGQTLYTAGNFNNDIGVPLTLLRLTPFD-DYAVIELGANHIGEIAYTTSL 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+P +A++T +A AHL F ++ +A AK EIF+GL G +N D + + Sbjct: 174 VKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDFWTPALEG 233 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTL 300 + T+ GK AD++ + + V + G H N ++ Sbjct: 234 KQVLTMTVTGKP--ADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAVLAA 291 Query: 301 GIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + V D ++ L P +GRG + + LID+SYNA+ A+MKAA+ Sbjct: 292 IAATKIDSRVTMDDVVRGLGSVSPVKGRGA---ISFPRPGLRLIDDSYNASLAAMKAAVD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +L +G +I VL DM EMGE + S H D+A LS +I V G Sbjct: 349 LLDSF----DGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLTYGL 395 >gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] Length = 461 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SID+R I + I+G +DGH F+ A++ GA + ++ ++IPV Sbjct: 30 VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA + R + +I +TGS GKT+TK+++T L++ K G++NNH Sbjct: 88 FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT I AHL + + I Sbjct: 148 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G N D+ + S L +TI +FG ++ ++ Sbjct: 208 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 265 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ ++ Q +++ +G H N L ++ I + + L Sbjct: 266 ATGTYFKMN-QDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 321 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 322 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 379 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 FH ++ +++ IS+V+ G Sbjct: 380 QFHYEVGKLIDPARISYVFTYG 401 >gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 226/474 (47%), Gaps = 36/474 (7%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ +F + ++ + G + P V G++ID R + P AF A G DGH F+ Sbjct: 1 MTPM-SFANFVRVVGGTPVLHEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A ++GA + VV D+ ++G P V + L A+ LA R + + ++ ITGS GK Sbjct: 60 AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM+ L ++ + NN +G+PLT+ + + E+GM LG+I L Sbjct: 116 TTTKEMVAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP+I VIT I H+ E IA AK E+ L G LN DD + ++ ++ Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRT 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGY 290 A I +G + D + + +W + +G S EV HG +G Sbjct: 236 SA----RILWYGMGEGCDI------RATSVTWSQ---EGMSFEVDTPHGTATLRIRLLGQ 282 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L + + L + L + GR + ++ G T+ID++YNA+P Sbjct: 283 HNVMNALAAIAVGQTLGISLGDIQIGLGRVEAQRGRLR----LVDAGDVTVIDDAYNASP 338 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +S+ A++ VL +I+ G R+AVLGDM E+GE++ H ++ ++ + + G Sbjct: 339 SSVGASLEVLERIAR--PGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCVGVL 396 Query: 411 VLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + A + V + ++ L + S L GDVV+VK+S R ++ Sbjct: 397 AVEMARAAEEAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRGVQLDRAVD 450 >gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Ames] gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A1055] gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Kruger B] gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Vollum] gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Australia 94] gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus anthracis CI] gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Ames] gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V T V + + ++PV V+D L AL LA R + +I +TGS GKT+T Sbjct: 65 A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+ A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237 Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I +FG ++ D+ + + ++ + +++ +G H N L ++ Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + L G R T+I+++YNA+P +M+AA +++ Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417 + G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P V + + L +Q+ + DVV+VK+S +I +L Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457 >gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 452 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 236/467 (50%), Gaps = 27/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG- 64 T D+L+A G + P ++ +S +S I P F I G D H FI +A+++G Sbjct: 5 TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A L +T+ S + P V D L A+ ++A R + II +TGSVGKTTT+E Sbjct: 65 ACLTQEHTE-----ASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTRE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L K + IG+ N+ +GVPLTL + + + G+ E+GMS G+I L +++ P Sbjct: 120 MIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++ V+T + +H+ + I K +I GL + G +FLN D+ + H + Sbjct: 180 NVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMI-----RKHIDYV 234 Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K Y F G +++ ++ K ++ Q+ E + + +G H N L + I Sbjct: 235 KKPYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIG 294 Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L DV +AIKA LS F G+R + ++ + LID++YNA+P SMKA++S+LS Sbjct: 295 --LRYDVPMSAIKAQLSTF-----SGQR-QNIIHVNDYILIDDAYNASPDSMKASLSILS 346 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDAL 418 + GR+IAVL DM E+G S +H ++ ++ ++ ++++G H + Sbjct: 347 EFKTR--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKE 404 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S+H + L F+++ L DVV++K SN + L+ Sbjct: 405 NPSLHTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451 >gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 10/382 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SID+R I + I+G +DGH F+ A++ GA + ++ ++IPV Sbjct: 27 VQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP--PVNIPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA + R + +I +TGS GKT+TK+++T L++ K G++NNH Sbjct: 85 FVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT I AHL + + I Sbjct: 145 IGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G N D+ + S L +TI +FG ++ ++ Sbjct: 205 AEAKLEIVTGLQDGGVFVYNGDEPLL-TNRVPSMNLAAETI-TFGDARANNYYPTSVTLQ 262 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ ++ Q +++ +G H N L ++ I + + L Sbjct: 263 ATGTYFKMN-QDENVVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVTLQMT--- 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 319 GMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 376 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 FH ++ +++ IS+V+ G Sbjct: 377 QFHYEVGKLIDPARISYVFTYG 398 >gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU028] Length = 451 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 145/443 (32%), Positives = 210/443 (47%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+SIDSR I F KG + DGH FI A+ GAG V + S G+ P+ Sbjct: 26 INGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAVFSEKENKYSEGNQG-PII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ LS+ K G+YNN Sbjct: 85 WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL + D + I E+GMS +I L+H+ +P IAVIT I +H+ + E I Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ K H +K N+D Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVNQVKNAKLISIGLNSDNTYTCHMND 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + K E H I G H +N + + I L + + Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R+ + N T+I+++YNA+P SMKAAI LS + +GR+I +L D+ E+G S Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSGM----KGRKILILADVLELGPNS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442 Q H + E L NI ++ G + D+ I V ++ D IQ S + Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKYFDNKEQLIQTLISQVK 428 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 D V+VK S +++ LL Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451 >gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] Length = 458 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 135/464 (29%), Positives = 227/464 (48%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AIATLWMKDVENPPENL--PVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLL-TNRVPEMNLAA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ + + ++ + ++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-RDETSSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + P+ Sbjct: 357 --GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 D-RVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITML 457 >gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] Length = 465 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 131/434 (30%), Positives = 222/434 (51%), Gaps = 20/434 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSI 83 + ++ D+R + F + G + DGH+FIL AV+ GA + + + D+ + + Sbjct: 28 ITSVNFDTRKLVKDSLFVPLLG-NNDGHNFILKAVENGAAVSLWSKPLKDLPLELEN-EF 85 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ V+D L AL LA + ++ ITGS GKTTTK+M LSS + + G++ Sbjct: 86 PIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMADAVLSSQYRVHKTQGNF 145 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+P+T+ MP++ + I E+GMS GEI+ L+ L +P +A+IT I +H+ F Sbjct: 146 NNHIGLPITILEMPIETEVVILEMGMSRAGEIKVLSDLAKPDVAIITMIGESHIEFFGSR 205 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRK 262 IA AK EI GL++ G + ++ LL+ + L + +FG S D + L Sbjct: 206 AGIADAKMEICSGLKENGVLIYPGEEP---LLQERVAVLKGSQLKTFGTSPENDLYPLNI 262 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 Q ++ S+ V + + V +G + N L L L ++ + L+ F Sbjct: 263 DAQMNQTSF--VTNERPDLVVSLPVLGTYNVNNALAALMAGMTLGISIEKSAPKLAQFQL 320 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + R + + +N+ ++++++YNANP +MKA + S + G++I VLGDM E+G Sbjct: 321 TKNRTEWLK-GINES--SILNDAYNANPTAMKAVLDNFSTFT--NTGKKIVVLGDMLELG 375 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG--FHVL--ALKDALPRSIHVHYSETMDGLFLFIQ 438 E S H+ + + L I V L G +VL LK +++ + L F++ Sbjct: 376 EQSTQLHLSVKDSLDPTQIEKVVLYGEQMNVLYEVLKGKFDEENLSYFTGAKEPLIQFVK 435 Query: 439 SSLVDGDVVVVKSS 452 + GD +++KSS Sbjct: 436 KQIEHGDYILLKSS 449 >gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 456 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 201/367 (54%), Gaps = 13/367 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSRSIA E F A++G ++DGHD++ A +GA +V TD + +LS+P+ Sbjct: 22 SGVSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALSLPLVQ 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNN 145 V + +L LA R R ++A+TGS GKTTTKEM+ L + + A G++NN Sbjct: 82 VAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILKAAYGEAVLATQGNFNN 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL R+ I ELGM+H GEI +L + RP +A++T AHL+ +E Sbjct: 142 DIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVALVTNAQRAHLAGMGSLEA 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA+ K I+ GL++TG N DD + +L +++ L + T FG + AD K+ Sbjct: 202 IAAEKGSIYTGLDETGVAVFNADDPWAKLWRSQCRGLRMMT---FGFEQAADVT-GKFHL 257 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +S + + +VV G H A+N L + LS F +G Sbjct: 258 HGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALAAGISLTAVQAGLSAFRGLKG 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R R AL+ L+D++YNANP S++A I VL+ G++I VLGDM E+GE+S Sbjct: 318 RLQR-RTALHGA--VLLDDTYNANPDSVRAGIDVLAATI----GKKILVLGDMGEIGEMS 370 Query: 386 QSFHIDL 392 FH ++ Sbjct: 371 AQFHDEI 377 >gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 216/444 (48%), Gaps = 17/444 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR I F A+KG +D HDF V++GAG ++V+ + + P Sbjct: 30 INTVKTDSRKIVCGGLFIALKGEKFDAHDFAADVVKQGAGALLVSRRL-----DIDCPQV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ KLA R +SKA ++A+TGS GKT+ KEM L T G++NN Sbjct: 85 VVKDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + T + RP A++ + AHL F + + Sbjct: 145 IGVPLTLFRLTEEHQFAVIELGANHIGEIAYTTAMTRPESALVNNLFSAHLEGFGSLAGV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIF GL GT +N D + + + +S + ADF + Sbjct: 205 AKAKGEIFAGLAPEGTAIINLDSNDWGNWQHGIREQQRVWHFSVTPAAGADFYATDIVEQ 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + +E++ G H N L + + A ++ LS GR Sbjct: 265 PLATHFCLHTPIGKIELILPLPGRHNVANALAASALAISVGASLEDICAGLSALKAVPGR 324 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + L+ G T++D++YNAN SM AA +VLSQ+S G R+ V+GDM E+G+ + Sbjct: 325 --LFPIHLSAG-KTVLDDTYNANTGSMIAAANVLSQMS----GYRVMVVGDMGELGKQAA 377 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF-LFIQSSLVDG 444 H ++ + ++ NI V+ G + DA R H + +E + L L Q ++ Sbjct: 378 ECHREVGKAVATTNIDKVFSVGTLSSHISDASGRGQHFANKTELVAALLPLLEQHEMIS- 436 Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468 +++K S S ++N L E F Sbjct: 437 --ILIKGSRSTAMEEVVNALKENF 458 >gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 454 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 218/398 (54%), Gaps = 46/398 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS++I F I DGH ++ A+ GA VAS+ S Sbjct: 27 IHGVCIDSKNIKEGNLFVPIIRVK-DGHGYVKEAMDNGA---------VASLWKKSYGTP 76 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K++++ LS+ + + Sbjct: 77 PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 137 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLET 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 EEI+ AK EI +GL++ G + N D++ LL K++ L ++ SFG+ D Sbjct: 197 LGSREEISKAKLEIIDGLKEEGLLLYNGDET---LLSRKNNVLVLEC-KSFGEKDTNDLF 252 Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 QL ++ K + +V L GK +++ +G + Q ++ T + Sbjct: 253 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNTIVGIAVGQ-------FYNVPTEKI 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ +++ H R++ + FT+I++++NA+P+SMKAAI L +++ + + Sbjct: 305 QDALRQINITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 356 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +I V+GDM E+G+ ++++H ++ ++L+ NIS+V+ G Sbjct: 357 KIIVIGDMLELGKEAETYHREIGKMLNQENISYVFTYG 394 >gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 450 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 218/444 (49%), Gaps = 27/444 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + + F A++G +G DF+ A+ +GAG V+V+ +S P Sbjct: 27 IQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGAGGVLVDI-------PVSAPGV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL L R R ++A+TGS GKTT KE+LT L+ A G+ NNH Sbjct: 80 LVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVKEVLTAILNQSGPVLATRGNQNNH 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTLAR+ + + + E+GM+H GE+ L+ L RP +A+I APAHL + I Sbjct: 140 VGVPLTLARLGPEHRYAVLEMGMNHPGELTLLSGLARPTLALINNAAPAHLEGLGSVAAI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A+AK EI GL+ G LN DD F + ++ ++ F W+ Sbjct: 200 AAAKGEILSGLDNRGLTILNGDDPFADFWAERAPG----EVWRFSLEHRPTRVRGHWR-A 254 Query: 267 SEQSW--MEVQL-QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 EQ +EV+ QG+ ++E+ G H +N+L L + +A++ Sbjct: 255 HEQGGGHLEVRAPQGQFTLEIPLP--GQHNGRNVLAATTAALALDIPIPQIQRAVAGLQT 312 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GR ++R + ++D++YNANPAS++AA+ VL+ G+RI VLGDM E+G Sbjct: 313 IPGR-LQWRSGPHGS--RMLDDTYNANPASLEAALRVLAAQP----GQRILVLGDMGELG 365 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + +H + + ++ G LA + A + + L + L Sbjct: 366 PEAALYHHQAGLLARQLGVERLYTLG--SLAEEAANAFGTNAEAFSELPPLLAALHRRLD 423 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 + VV++K S + R++ L E Sbjct: 424 EETVVLIKGSRAARMERVVQALGE 447 >gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] Length = 453 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 224/471 (47%), Gaps = 32/471 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L++ +G I +++G +IDSR I + F IKG DGH FI A +KG Sbjct: 5 SLEQLVKITEGRLIQTGTTDWISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGC 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 T+ + +S+ + V+ L A+ LA R R +IA+TGS GKTTTK++ Sbjct: 65 STSFTETEALDFPEGISVVL--VESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDL 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS KT G++NN G+P TL + + + + E+GM HL +IR VRPH Sbjct: 123 IASVLSQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRKSIGEVRPH 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I+VIT I AH+ + I +AK EIFE + LN DD + +K + Sbjct: 183 ISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKEDEEPFSVV 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G+ D L+ + S + G+ + GI H N L + + Sbjct: 243 RVGIKGE----DLSLKAEQVDSSAQGIRFVADGEHFHFAYPGI--HNVYNCLTAIWLGRY 296 Query: 306 LTADVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L F P R R R A T+I++SYNANP +MKAA+ +L + Sbjct: 297 YQMTHEEIQRGLDAFKPSGNRMDIVRVREA------TVINDSYNANPDAMKAALDMLWDM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDL-------AEVL-SLYNISHVWLSGFHVLALK 415 RR+AVLGDM EMGE+++S H+++ A+VL ++ S ++ G +L Sbjct: 351 GKS--CRRLAVLGDMLEMGEMAESGHLEIGAYAAEKADVLIAVGPESKAYIKGAGA-SLA 407 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 D ++ +G ++ + GDV+++K+S + + ++ E Sbjct: 408 DE-----RCFWTADAEGAGKLLRKLMAPGDVILIKASRGVHLEKTLKMIQE 453 >gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] Length = 451 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 216/465 (46%), Gaps = 29/465 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W D+ +A H I G++IDSR + + F KG + DGH F+ A++ G Sbjct: 12 WISCDIDEAYLEHQI--------KGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG S S+ P+ VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 64 AGASFYEKGQDIS-DSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + G+YNN IG+PLT+ ++ D + I E+GMS EI L+ + P Sbjct: 123 MIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ K H + Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEPLL-----KPHVENV 237 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLG 301 K N + L + S+ + + K H+ +G H +N + + Sbjct: 238 KNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKE----HYELPILGIHNMKNATIAIA 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I L D +T K +S R +R+ NQ T+I+++YNA+P SMKAAI LS Sbjct: 294 IGHELGLDYNTIQKNISNVQLTGMRMERH-VTDNQ--ITVINDAYNASPTSMKAAIDTLS 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 H GR+I VL D E+GE SQ H D+ L I + G + Sbjct: 351 ----HMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGNDAKFISRTGGHF 406 Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V Y + L +++S L D V++K S ++N L+ Sbjct: 407 VEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451 >gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli] Length = 452 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALTAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448 >gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 452 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 235/467 (50%), Gaps = 27/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG- 64 T D+L+A G + P ++ +S +S I P F I G D H FI +A+++G Sbjct: 5 TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A L +T+ S + P V D L A+ ++A R + II +TGSVGKTTT+E Sbjct: 65 ACLTQEHTE-----ASGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTRE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L K + IG+ N+ +GVPLTL + + + G+ E+GMS G+I L +++ P Sbjct: 120 MIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++ V+T + +H+ + I K +I GL + G +FLN D+ + H + Sbjct: 180 NVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMI-----RKHIDYV 234 Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K Y F G + + ++ K ++ Q+ E + + +G H N L + I Sbjct: 235 KKPYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIG 294 Query: 304 SILTADVD-TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L DV +AIKA LS F G+R + ++ + LID++YNA+P SMKA++S+LS Sbjct: 295 --LRYDVPMSAIKAQLSTF-----SGQR-QNIIHVNDYILIDDAYNASPDSMKASLSILS 346 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDAL 418 + GR+IAVL DM E+G S +H ++ ++ ++ ++++G H + Sbjct: 347 EFKTR--GRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKE 404 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S+H + L F+++ L DVV++K SN + L+ Sbjct: 405 NPSLHTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALM 451 >gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] Length = 454 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 147/475 (30%), Positives = 224/475 (47%), Gaps = 38/475 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+ ++G G Q + ++ D+R+I F A+ G +D HDF A KGA Sbjct: 5 TLSDIANIVEGTQSGGEVQ--IQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAADKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V + + IP V D AL L R +AITGS GKTT KEM Sbjct: 63 AALIVERQL-----DIDIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKTTVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + + G++NN IGVPLTL R DF + ELG +H+GEI + T LV+P Sbjct: 118 VASILSGLGQVLYTAGNFNNDIGVPLTLLRSTPQDDFSVIELGANHIGEIAYTTALVKPD 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++ +A AHL F ++ + +AK EI++GL GT +N D + S L K Sbjct: 178 IAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALINLDSQGESIW---SEVLQDK 234 Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +F K + NADF SE G + +H IG Q L+ V+ Sbjct: 235 NLITFSKQNTNADFYGSDIAMSSE---------GYPLFTLHTPIGNVELQLSLLGEHNVA 285 Query: 305 ILTADVDTAIKALSVFHP-KEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAI 357 A AI+ + K G +R TLID+SYNA+ +MKAA+ Sbjct: 286 NAVAASALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLTEHITLIDDSYNASVPAMKAAV 345 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +L+Q +G+R +LG+M E+G S + H ++ + + + HV G + D Sbjct: 346 DLLAQFK---QGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLTYGEDAKVISD- 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEEF 468 L +H ++ D + +I+ +L+ ++VK + S G Y + N L E + Sbjct: 402 LCGGMHF---QSHDSMLEYIERNLIQLNQTSHTLLVKGALSAGMYTIANALKETY 453 >gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 462 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 219/446 (49%), Gaps = 20/446 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + + I G + +GH ++ A+ GA V+ + + I V Sbjct: 30 IQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNGARAVL--WERREANPPKEIVVI 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL +LA A R + ++ +TGS GKT+TK++L L+ T +G+YNN Sbjct: 88 LVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKDILASVLAKHFITQKTLGNYNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + + + E+GM +L E+ FLT +VRP IA+I+ + AHL N +E I Sbjct: 148 IGVPLTLLSLSENCEAAVVEMGMENLQELSFLTQIVRPDIAIISNVGTAHLENLGTMENI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI EGL + G + N D + G I +FGK + D + + +Q Sbjct: 208 ARAKMEITEGLGEHGLLIYNGDQQLLRNAAIEKQIPGCIKIRTFGKDEQNDVVVHQVRQL 267 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ Q +++ IG H A N L D + + + R Sbjct: 268 PDGLCFSIKDQVYHLDM----IGKHQAMNATAAWIAARALGLDEEEIAQGFASVEKTGLR 323 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385 + R +NQ ++++SY +NP S AA+ + + P+ ++AVLGDM E+GE S Sbjct: 324 NELVR--VNQCL--ILNDSYKSNPQSALAAVDTMEEFDIPY----KLAVLGDMLELGETS 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 H L + +S Y++ V G + +D + ++ H+++ + L +++ + Sbjct: 376 DMIHYTLGKDISSYHLQEVLTIGDMACYIAQGARDNMEHTLVRHFTDK-EELLNYLRPYM 434 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 +++VK S +++ L++E Sbjct: 435 HKECMLLVKGSRGMKLDEVVDELVKE 460 >gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 471 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 215/460 (46%), Gaps = 37/460 (8%) Query: 23 PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS- 80 P V G + DSR P F A G DGHD+ V+ GA VA +GS Sbjct: 23 PSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYARAVVETGA---------VAVLGSR 73 Query: 81 -LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + +P VDDV AL LA R AT++A+TGS GKT+TK+++ L + T Sbjct: 74 PVGVPAIVVDDVQRALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRTKAPTVFT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 GS NN IG+PLT + F + E+G +G IR+LT L P I ++ + AH+ Sbjct: 134 PGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHIGE 193 Query: 200 FSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 F G E+IA AK E+ E L E+ G LN DD + + + A++ A + FG+S A Sbjct: 194 FGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAMAARTTA----RVLLFGESDEA 249 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 D + + Q + +V G H N L + L Sbjct: 250 DVRAENVTLTAAGQPSFSLHTPSGCSDVTMRLYGEHHVSNALAAAAVAHELGMSAKEIAT 309 Query: 316 ALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI- 372 ALS + G R+R + + T+++++YNANP SMKAA+ L+ + G GRR Sbjct: 310 ALS----EAGSLSRWRMEVTERPDGVTIVNDAYNANPESMKAALRALAAM---GRGRRTW 362 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHY 426 AVLG M E+G+ + + H + + N+ + G + A + VH Sbjct: 363 AVLGRMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHV 422 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S+ + L ++S L GDVV+VK+S S G + LLE Sbjct: 423 SDAQAAVDL-LRSELRPGDVVLVKASRSVGLESVAQALLE 461 >gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 460 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 148/470 (31%), Positives = 233/470 (49%), Gaps = 29/470 (6%) Query: 10 LLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 + QA+ G +G +V G V DSR + A G DGH+FI A+ GA Sbjct: 8 IAQAVNGKLLGADVVVSGSV---ETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVC 64 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEM 125 +V + + I V LG L K+ + RLR+ I+ ITGSVGKTTTK++ Sbjct: 65 AIVTNPSIGNPEHTRILVEDATYALGLLAKVHIE-RLRATGDLRIVGITGSVGKTTTKDL 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ T A + S+NN +G+PLT + + + + E+G S +G + +LT LV P Sbjct: 124 TAGILAKFAPTVAPVASFNNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLTGLVSPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + V ++ AHL F + +A AKAE+ EG+++ G + LN DD ++ +H Sbjct: 184 LGVELSVGRAHLGGFGSVAGLARAKAELVEGVKENGLVILNLDDPNVAAMETVAH---TP 240 Query: 246 TIY--SFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTL 300 +Y + G K AD R + S S+ E G+ + VH G +G H N L + Sbjct: 241 VVYFSALGNEK-ADIYARNVTLDEFSHASF-EAVTTGEVIP-VHLGLVGAHQVNNALAAI 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I ++ + AL+ K R ++G T ID+SYNANP SMKA ++VL Sbjct: 298 SICQGFGLELPEIVAALNGM--KAASPHRMSIVESRG-ATFIDDSYNANPDSMKAGLAVL 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 ++ H +RIAVLG+M E+GE S H ++ E++ + + G A + A+P Sbjct: 355 AKQGEHAN-QRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLITLGEG--AKEIAVPL 411 Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ H H + + L ++ +V GDVV +K SN G +++ + + E Sbjct: 412 TEKTTHFHAGSVAEAVKL-LEEKVVAGDVVFLKGSNGSGVWKVADKFVAE 460 >gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae] gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] Length = 428 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 223/438 (50%), Gaps = 29/438 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +SID+R I FFAIKG ++D + F A+ GA VV++ + I +I V + Sbjct: 16 LSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYF-IDDRTILV---N 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +L+ R K I+A+TGS GKTTTKE++ + LS KT A IG+ NNHIGV Sbjct: 72 NSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + GI E+G +H EI FL + +P IT AHL F G++ + Sbjct: 132 PLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYITNFGKAHLEGFGGVQGVIEG 191 Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267 K+E+++ L K T+F+N +D + GIK ++FG +K +AD +++ Sbjct: 192 KSEMYQYLLKNNKTVFVNLEDPI-----QIEKSTGIKN-FTFGVNKESADLKIKNI---- 241 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGR 326 Q+ V ++ + +V H IG + A N+ + I + D IK A+ + P R Sbjct: 242 -QANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVE-DALIKEAIENYIPANNR 299 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + L +G +I ++YNANP+SM AI+ Q+ +I +LGDM E+G S Sbjct: 300 SQ----LLKKGSNEIILDAYNANPSSMAVAITNFLQLENQ---NKIMILGDMFELGNESH 352 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + LS N S +L G + + + ++ + ET D ++++ + Sbjct: 353 EEHKAIVDSLSNQNKSKCYLIG---KSFYENKISNENIQFYETFDAFAAYLKTIEFKDNT 409 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S R ++ + Sbjct: 410 ILIKGSRGMALERTLDYI 427 >gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Clostridium botulinum H04402 065] Length = 462 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 138/471 (29%), Positives = 230/471 (48%), Gaps = 33/471 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G + S V V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS K + G++NN IG+PL + ++ D + E+GM+H EI ++ +P Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMSEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298 +Y G K DF +E ++ QGK+ G+ G H N L Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295 Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ I D+ T IK L + R +G FT+I++ YNA+P SMKA Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI V+ I R IA+LG M E+G H +++E I ++ G A K Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYK 405 Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 406 EGFEEINKENYKSFLNNQEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] Length = 425 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 140/437 (32%), Positives = 216/437 (49%), Gaps = 29/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I FFA+KG +++G+++ A++KGA +V+ + A+ S V Sbjct: 16 VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYAT----SDKTILVK 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L KLA R A +I +TGS GKTTTKE++ LSS KT A IG+ NNHIGV Sbjct: 72 DVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D + I E+G +H EI FL L +P IT AHL F +E + Sbjct: 132 PLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGSVEGVIEG 191 Query: 210 KAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ L +IFLN DD ++ K IK Y F +K F+++ Sbjct: 192 KSELYDYLLANQKSIFLNADDP----IQHKKLGHYIKK-YGFTTAKKEYFKIKFL----- 241 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S V L + +E+ IG + N + + +++ A+ + P+ R + Sbjct: 242 ISDPYVSLSVEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDIKTAIESYIPQNNRSQ 301 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +I ++YNANP SMK A+ + +S GE +IA LGDM E+G S Sbjct: 302 ----IIESNGTRIILDAYNANPTSMKVALENFNSLS--GE-PKIAFLGDMFELGATSNEE 354 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVV 447 H ++A++ S +IS V+L G + K L + + + L L++ L + Sbjct: 355 HQNIADLTSSLDISEVFLVGDNFYRTKTPLKK------FKNYEALALYLADVELPSNSTI 408 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S RL+ LL Sbjct: 409 LIKGSRGMALERLLELL 425 >gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga algicola DSM 14237] gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga algicola DSM 14237] Length = 436 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 134/437 (30%), Positives = 214/437 (48%), Gaps = 30/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGV 88 IS D+R + FFA+KG ++DG+ + A++ GA V++ + A S ++ +P Sbjct: 28 ISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDATILVP---- 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL L +LA R K +IA+TGS GKTTTKE++ L + KT A +G+ NNHIG Sbjct: 84 -DVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVGNLNNHIG 142 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + D + I E+G +H EI FL ++ P IT AHL F E + Sbjct: 143 VPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGYITNFGKAHLEGFGSFEGVIK 202 Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L+K IF N DD EL K K +S S + QL++ Sbjct: 203 GKSELYDYLQKDEKPIFFNADD---ELQANKLSNYINKFGFSETDSHYYNIQLKEADPF- 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 VQ+ ++ E+V + IG + N + + +D + + P R Sbjct: 259 ------VQIIFENQEIVSNLIGAYNFINCCAAIIMGKYFNVSIDQIKNGIERYIPSNNRS 312 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + L Q +I ++YNANP+SMKAA+ S++ ++I LGDM E+G + Sbjct: 313 Q----VLTQNTNEIILDAYNANPSSMKAALDNFSKLKT---TKKIVFLGDMFELGSTAPE 365 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +AE+ S N + +L G + D + S + L +F++++ + Sbjct: 366 EHQHIAELTSALNFTEAFLIGENF----DVTTSDLKTFKS--FNELAVFLKTNTFKDASI 419 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S R+++LL Sbjct: 420 LIKGSRGMALERVLDLL 436 >gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 469 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 149/488 (30%), Positives = 225/488 (46%), Gaps = 61/488 (12%) Query: 5 WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + QA+ G H G + I+IDSR +A F AIKG DGHDFI + Sbjct: 4 MTLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQCFE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V+ ++ S V+ L AL LA+ R ++ ITGSVGKT+T Sbjct: 64 KGAACVISEKELPDEEHSY----IQVESSLQALKDLALLYRNNLDVKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE ++ LS + +G++NN IG+PLT+ R+ D + + E+G+S GE+ L+ + Sbjct: 120 KETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRLSKIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I VIT I HL N + I AK EIF + G + LN DD + L S Sbjct: 180 QPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNPDGIVILNGDD---DKLSTISQVH 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------------- 288 G + + FG S K + L G S + HG+ Sbjct: 237 GKRPLV-FGISNKDGVYADNIKS--------LGLDGTSFTI--HGLDTADKYSTFDMTVP 285 Query: 289 --GYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+HM N + + S+L + +++ ++ L GR + + FT+ID Sbjct: 286 VPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTI---AGRNN----IIKENGFTIID 338 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + YNANP SMKA++ VL GR++A+LG M E+GE + H D+ L +I Sbjct: 339 DCYNANPVSMKASLDVLDTAI----GRKVAILGSMFELGENEKQMHYDVGMYLGTKDID- 393 Query: 404 VWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 V ++ + A A R+ VH ET D + I L GD +++K+S+ Sbjct: 394 VLITAGDLAAQIAAGTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIKASH 453 Query: 454 SCGFYRLI 461 F +++ Sbjct: 454 GMEFSKVV 461 >gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2] Length = 471 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 226/463 (48%), Gaps = 63/463 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S D+R+I + A+KG +++GH+F A GA ++ + + ++SIPV Sbjct: 24 VSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGASAIIASEPV-----NVSIPVV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL L A + IAITGS GKTT KEM L A G++NN Sbjct: 79 YVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEMCAAILERRGSVLATNGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ ++ + ELG +HLGEI + T+LV+P +A I A +HL F + + Sbjct: 139 IGVPLTLLRLEHHHEYAVMELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRK-- 262 A AK+EIF+GL +GT +N D F + + K L K + +F + ADF Sbjct: 199 ARAKSEIFKGLGDSGTAIVNVDSQFADFWQGK---LKQKRVLTFSPMQKNEADFTAEDII 255 Query: 263 --------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 ++ CS + +QL ++ G H N+L+ + L A ++ Sbjct: 256 VGLDGCAAFQLCSNEGEAAIQL------IIP---GIHNVGNVLVAAALTMQLGATLENVR 306 Query: 315 KALSVFHPKEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L +GR G + R L+D++YNAN AS+ AAI LS S Sbjct: 307 DGLLAMKQVKGRLNVKTLGSQVR---------LLDDTYNANVASVNAAIDTLSTFS---- 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGFHVL-----ALKDALPRS 421 G + +LGDM E+GE ++ +H E + Y +S +L F VL A+ DA P Sbjct: 354 GINVLILGDMKELGEKARFYH----EQVGNYALSKGIDYLYSFGVLSQSASAVFDAAPGK 409 Query: 422 IHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLI 461 H+++ +D L ++ L D+ ++VK S S R++ Sbjct: 410 NGEHFTD-IDSLVSALEQDLQVEQQDISILVKGSRSSRMERVV 451 >gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] Length = 452 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++VN + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVNRPL-----DIDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] Length = 449 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 140/446 (31%), Positives = 211/446 (47%), Gaps = 23/446 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++ I DSR + F + G DGH+F A +KGA + + L I Sbjct: 19 QTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQAQEKGAIAAFWSHPTIQPPEGLMI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D L A KLA + + +IAITGS GKTTTK+M+ ++ KTY G++ Sbjct: 78 --IEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKTTTKDMVDAVVAQQFKTYKTQGNH 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ P D + + E+GM H GEI L+HL +P +A IT I AH+ N Sbjct: 136 NNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSHLAQPDVAAITLIGEAHIENLGSR 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL+ G + D+ A+ + + +FG + + + Sbjct: 196 EGIAKAKMEITAGLDPAGFFMIPADEPLLTPYLAEL----TQQVETFGLGE-GNLKGTIQ 250 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ EQ+ V Q ++ V IG + +N L+ +GI L + + L+ F Sbjct: 251 EETQEQTAFTVADQVYTIPV----IGGYNVKNALIAIGIGRYLGIEEEKIKAGLADFQLT 306 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + + A ++ + YNANP +M + ++ GRRIAVL DM E+G Sbjct: 307 KNRTQWLKAANGAA---ILSDVYNANPTAMGLVLDSFRKLPLT--GRRIAVLADMLELGP 361 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438 S H +A+ L ++L G + ALK AL +S +H E L +Q Sbjct: 362 DSAKMHAGMADHLD-ERFDLIFLYGSEMQALKRALDQSRLADRVHFFSKEEKAALITQLQ 420 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 L D +V+K SN G +I+ L Sbjct: 421 KELQPTDSIVLKGSNGMGLVEVIDSL 446 >gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 135/407 (33%), Positives = 205/407 (50%), Gaps = 37/407 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GISID+R+I + F +G H +GH F++ A +KGAG + D P+ Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGAGASLWQKDEPNP--PEGYPLL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL ++A A R KA I ITGS GKT+TK++L L+ K IG++NN Sbjct: 82 FVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+P+T+ ++ D D + E+GMS GEI FL+ L RPH+ VIT I AH+ + I Sbjct: 142 LGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSKLARPHMTVITNIGEAHMQDLGSRAGI 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-----GIKT---IYSFGKSKNADF 258 A AK EI +G++ G +F + D+ + L AK L G+++ +Y+ NAD Sbjct: 202 AKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQHLQSVPFGLESNNLLYADNIHANAD- 260 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + ME G V +G H +N L+ + I + + + T+++ Sbjct: 261 ----GSHFTTHGMME----GDFFISV---LGRHQVKNTLVAMLISHKLGLSNEQIRTSLE 309 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIA 373 + + R + L I+++YNA P S+KAAI + S I P + Sbjct: 310 HVVL------TDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATSTIRP----EKWL 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 VLGDM E+G + FH LAE ++ I +V L G +L L L + Sbjct: 360 VLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYKILEK 406 >gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 458 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V T V + + ++PV V+D L AL LA R + +I +TGS GKT+T Sbjct: 65 A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+ A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237 Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I +FG ++ D+ + + ++ + +++ +G H N L ++ Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + L G R T+I+++YNA+P +M+AA +++ Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417 + G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P V + + L +Q+ + DVV+VK+S +I +L Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITML 457 >gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] Length = 452 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 143/448 (31%), Positives = 216/448 (48%), Gaps = 26/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I P F A+ G +D HDF +AV+ GA ++V+ + S P Sbjct: 24 IEQVSTDTRTIEPGSLFVALVGERFDAHDFASNAVEAGASALLVSKAL-----DCSTPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL K+ + +AITGS GKTT KEM+ + + + G++NN Sbjct: 79 LVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + DF + ELG +H+GEI + T LV+P IA++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQLVQPDIAMVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRK--W 263 AK EI++GL+ +N D E + L K + F S + ADF R Sbjct: 199 KQAKGEIYQGLKPGSVAIVNLDSHGGEYWQ---QVLADKRVVHFSVSDDSADFFARNITM 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E S+ V QG + V IG H N L + L A ++ L H Sbjct: 256 STAGEASFELVSRQG-TFSVELGIIGQHNVANALAASALAFELGATIEMVQSGLK--HLA 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ +L TLID+SYNA+ +MKAA +LS G R +LG+M E+G+ Sbjct: 313 KVKGRVESVSLTDK-ITLIDDSYNASVPAMKAAADLLSSFG----GVRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + HV G A A+ + +T + + FI+ L + Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTFG----ADAKAISEQCQGKHFDTHESMIEFIKQQLAN 423 Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEEF 468 ++VK +NS G ++ L E + Sbjct: 424 HNGAQTLLVKGANSAGMSKIAAALKEMY 451 >gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Myxococcus xanthus DK 1622] gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Myxococcus xanthus DK 1622] Length = 466 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 217/457 (47%), Gaps = 33/457 (7%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G P + + D+R++ P F A+ G +D H F+ A + GA VV Sbjct: 21 GPAPAAYAT-VCTDTRALTPGCLFVALVGERFDAHAFVDAAAKGGAAGAVVARGRPLPAL 79 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + ++ VDD L AL L R R + + A+ GS GKTTTKEM+ L++ Sbjct: 80 PDGLTLYEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKTTTKEMVGAILATRGPALKT 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IGVPLTL R+ + E+GM+ GEI L +V+P VIT + P HL Sbjct: 140 EGNLNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITVVQPEHLEG 199 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 IE +A+A+ E+F+ + TI +N DD+ L+ A++ G + + +FG++++AD + Sbjct: 200 LGSIEGVAAAEGELFQEMGHGTTIVVNVDDA---LIPAQAERSGAQRL-TFGRAEHADVR 255 Query: 260 LRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 L K + + V+ G+ V H +G H AQN + L + ++ L Sbjct: 256 LADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAAFAVALALGYTPEECVRGLE 315 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P +R Q T+ID+ YNANPASM AA+ L + P GR + VLGDM Sbjct: 316 SARPYS---RRLNVVDGQHGVTVIDDCYNANPASMDAALETLGTLVP-ASGRAVVVLGDM 371 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----------VHYS 427 E+G H L + SH L+ F PRS+ H++ Sbjct: 372 LELGPGELEEHARLGGQIP----SHAALAAFFG-------PRSLKGWEAASMGESAAHFT 420 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++ L ++ L +GDVV+VK S R++ L Sbjct: 421 D-VEPLMAWLAPRLREGDVVLVKGSRGMRLERVVAAL 456 >gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] Length = 468 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 153/488 (31%), Positives = 227/488 (46%), Gaps = 58/488 (11%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ + G V F V GI+ D+R++ E F A++G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + A+ KGA VVN + S P+ V D L A LA + R R II +TGSV Sbjct: 61 VAAIAKGALCAVVNREFAVS--HPEFPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ L+ Sbjct: 179 LTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------KSMEVVHHGIGYH 291 + TI ++G E ++ +L G +E+ G H Sbjct: 237 ATQVWSGTTI-TYGL---------------EGGILQGELLGHETIRVAGIELPLPLPGSH 280 Query: 292 MAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 A N L L ++ + +A + LS+ P +GR KRY A + L+DE Sbjct: 281 NASNFLAALAVLRAIAGWETSAEELYAPLSTGLSLQMP-QGRAKRYHLAQD---ILLLDE 336 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +YNA S AA+ +L++ + R IAVLG M E+GE S FH + N+ + Sbjct: 337 TYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGL 393 Query: 405 WL-----------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 ++ G V+ D + +D + F++ GD V+ K+SN Sbjct: 394 FILADLAEAQAMAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKP----GDRVLFKASN 449 Query: 454 SCGFYRLI 461 S G R++ Sbjct: 450 SVGMNRVV 457 >gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] Length = 458 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 22/467 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V T V + + ++PV V+D L AL LA R + +I +TGS GKT+T Sbjct: 65 A----VATLWVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+ A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEM 237 Query: 243 G-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I +FG ++ D+ + + ++ + +++ +G H N L ++ Sbjct: 238 NLIAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + L G R T+I+++YNA+P +M+AA +++ Sbjct: 297 IAKYFGVTWEEMKEGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMN 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---- 417 + G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 354 GLD--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKIN 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P V + + L +Q+ + DVV+VK+S +I +L Sbjct: 412 FPNE-RVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVIMML 457 >gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 451 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 190/385 (49%), Gaps = 27/385 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DL Q + IG G + +S D+R++ F A++G +D HDF AV GA + Sbjct: 8 DLAQVLDARLIG--EDGEITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAVAAGASAL 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V ++ SL+IP V D L L + R R ++AITGS GKTT KEM T Sbjct: 66 LVEREL-----SLAIPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTTVKEMTTA 120 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L + A G++NN +GVPLTL R+ F + ELG +H GEI + T L RP A+ Sbjct: 121 ILRHEGEVLATAGNFNNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSLARPDAAL 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I +A AHL F +E + AK+EIFEGL + GT +N D +F+ K A GI + Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLSEQGTAIVNADSAFW----PKWQAAGIHCAF 236 Query: 249 SFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S + +N F R + C+E ++ V G+ + + G H N L Sbjct: 237 SI-EDQNQPFHARGIALNGQGCAE--FVMVTPNGE-LSLTLAIPGRHNVANALAAAAGCL 292 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L A + + L P +GR C G TL+D++YNA+ S+ A I L+ + Sbjct: 293 ALGASLASVKAGLEQMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMG 348 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389 G ++ V GDM E+GE S H Sbjct: 349 ----GYKVLVFGDMKELGEESAEQH 369 >gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] Length = 455 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/459 (28%), Positives = 218/459 (47%), Gaps = 29/459 (6%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ LS + Sbjct: 74 --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F ++IA AK EI + L++ G N D+ E AK K + + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239 Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 F R+ + +S+M ++ G + + IG H N L + + + + Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +AL+ F P R + + + + ++D+ YN+NP ++KA + Q+ GRR Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPIAVKAVTTSFGQVMVEDGGRR 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426 IAVLGDM E+G+ S H LA L I+ ++L G + L DAL ++H + Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPAENLHYYP 416 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes shahii WAL 8301] Length = 417 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/437 (30%), Positives = 207/437 (47%), Gaps = 35/437 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R I P FFA++G +DG+ F+ A++KGA V + VA+ V VD Sbjct: 14 ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQRIVL-VD 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL LA R I+AI+GS GKTTTKE+++ L+ + YA G+ NNHIGV Sbjct: 73 DTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL M D +FG+ E+G S GE+ L + P+ ++T I AHL F G E + Sbjct: 133 PLTLLAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNIGLAHLEGFGGPEGVRRG 192 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+F+ L G F+ DD + A+ +L AD ++ S Sbjct: 193 KGELFDFLAANGGHAFVPADDEILTGMAAERDSL-------------AD----EYYSASL 235 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +E L+G + N+ + + + A++ + P R + Sbjct: 236 ADGIENHLEGS-----------YNRFNIAAAVAVGRYFDVPDERIRHAIASYVPDNNRSQ 284 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R + N TL+ + YNANP+SM+A++ RR+ +LGDM E+G+ S+ Sbjct: 285 RIGTSRN----TLVADCYNANPSSMRASVGNFLAEPLEERQRRVLILGDMLELGDWSERE 340 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E+ + + + L G D L + +V T D L ++ S V+ +V Sbjct: 341 HAAIIEMAAQDPEAELLLVGPEFAKAYDGLAEKPANVTLCPTRDDLISLLKVSPVEHSLV 400 Query: 448 VVKSSNSCGFYRLINLL 464 +VK S+ G + + L Sbjct: 401 LVKGSHGMGLEQALEAL 417 >gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] Length = 473 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 215/465 (46%), Gaps = 55/465 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+ DSR+I P F I G +DGH+F+ + GAG D L P+ Sbjct: 26 IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASGAGAAFWQRDHQPVPADL--PL 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL LA S+A ++ ITGS GKTT K+M++ L + + G+YNN Sbjct: 84 ILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKDMVSALLETTYNVHKTQGNYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ M D D + E+GMS EI L+++ RP + VIT + AHL EE Sbjct: 144 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREE 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257 IA AK EI G++ G + + D+ + A+ + G++T Y+FG D Sbjct: 204 IARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKPEGLRT-YTFGNQDTNDDYPTG 262 Query: 258 --FQLRK---WKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIV 303 F R + + L G+ H GIG ++ L + Sbjct: 263 LMFHARGIIFTSRLHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFAHLKLS 322 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 S+ V+TA T+++++YN++P ++KAA+ VL + Sbjct: 323 SMRIEAVETAFG-----------------------VTVLNDAYNSSPTAVKAAVDVLGDM 359 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALP 419 G RRIAVLGDM E+G+ +SFH ++ + LS N V+ G L K P Sbjct: 360 K--GYRRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVFTYGPLSLHTANKAKARFP 417 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +++ + L + + + D+V+VK+S +++ L Sbjct: 418 EGAVLSFTDK-EKLIEALLEQVTEKDIVLVKASRGMRLEHVVDAL 461 >gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 459 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/476 (28%), Positives = 231/476 (48%), Gaps = 47/476 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A +G+ I P+ N +SID+R + + AIKG ++DG+DF++ A+ KGA Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64 Query: 66 GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +++ L+ + V++ AL +LA R + +I +TGS GKT+TK+ Sbjct: 65 ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ ALS K + G++NN IG+PL + + D + E+GMS L EI+ L+ + RP Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I +H+ N E I AK EI K + +N+DD + + + L I Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-I 243 Query: 245 KTIYSFGKSKNADFQ----LRKWKQCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K S KN D + + K C +S + + GK H N L Sbjct: 244 KA--SISDDKNIDLKGESLVLKEDSCEFKLNESKFYIPMPGK-----------HNISNAL 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L + K F E R N+G T+I+++YNA+P SMKAAI Sbjct: 291 LAIACARELGVEDQLINKG---FLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAI 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHVWLSG 408 V+ + RRIAV+G M E+GE S +H ++ ++++ + + G Sbjct: 347 EVMKNLKGK---RRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGEFAKAYSEG 403 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 F+ ++ + +E +G ++ S + + D+++VK+S S F ++ L Sbjct: 404 FN--------NKNSSIELAEK-EGAIAYLTSEIREEDIILVKASRSMKFETIVEAL 450 >gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] Length = 462 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 29/453 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G++ DSR + + F + G + DGH +I A++ GA + +D + Sbjct: 22 PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139 +PV V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KT+A Sbjct: 80 LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLSTQFNVTKTHA- 138 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P +AVIT I AH+ Sbjct: 139 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + IA AK EI GL++ GT N D+ + +AK + +T FG Sbjct: 197 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 252 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q+ + L + + +G + N L L + A +A++ Sbjct: 253 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 311 Query: 320 FHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F P E R + YR ++ + YN+NP + + ++ + + +G+RIAVLG Sbjct: 312 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 363 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431 DM E+G+ S + H+ LA L I+ V+L+G H+ AL + L ++H + ++ Sbjct: 364 DMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 423 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L + +++ D V++K S+ +++ L Sbjct: 424 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456 >gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 455 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 206/431 (47%), Gaps = 17/431 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F ++G DGHDF+ A+ GA + I V Sbjct: 24 ITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PEGIAVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ LA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 EVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L RP +AVIT I AH+ F ++I Sbjct: 141 IGVPMTVLEMKPNTEILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L + G N D+ LL+ ++ L + +FG + +K Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFEDDDTVHATGFKSY 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + IG H N + + + + +LS F P R Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + + I YN+NP +++A I+ Q+ GRRIAVLGDM E+GE S Sbjct: 315 MEWEKGDVGEAIMSDI---YNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSP 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHY--SETMDGLFLFIQSSL 441 H +L++ L I+ V+L G + L DAL S H+HY + MD + +++ + Sbjct: 372 KLHAELSDTLDPQIINEVYLYGPEMKNLYDALQGKYESEHLHYYTKDQMDRMIDDLKNDI 431 Query: 442 VDGDVVVVKSS 452 D+VV+K S Sbjct: 432 KSDDIVVLKGS 442 >gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] Length = 456 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 193/394 (48%), Gaps = 28/394 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF +L QA+ + +G+SIDSR+I P + F A+ GP +DGHD++ KGA Sbjct: 6 TFSELSQALSARVLS--SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAAKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V ++ S ++P V D AL +L R + A+TGS GKTT KE+ Sbjct: 64 VGALVQCEVPES----TLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKTTVKEL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L + A G+ NN G PLTL + + + ELG S +GEI + L +PH Sbjct: 120 LAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPH 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+I AH+ F G E+I AK EI EGL+ +GT LN DD FE +A+ A G K Sbjct: 180 VAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRAR--AAGRK 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVS 304 + + ADF S + V +G +H G Q N+L + + Sbjct: 238 VLTFAVLNAAADFH---------ASDITVDARGCPSFTLHTPQGREPVQLNLLGNHNVAN 288 Query: 305 ILTADVDTAIKALSVFHPKEGRGK------RYRCALNQGFFTLIDESYNANPASMKAAIS 358 L A +S+F G G R L +ID++YNANP+S+ AA+ Sbjct: 289 ALAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANPSSINAAVD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +L +GR++ VLGD+ E+GE ++ H ++ Sbjct: 349 LLKGF----DGRKVLVLGDIGELGEWAEQGHREV 378 >gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] Length = 458 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 202/389 (51%), Gaps = 24/389 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S D+R+I + ++G ++GHDF+ A QKGA V V +PV Sbjct: 27 VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGA--VAVLWAEREGTPPEGVPVV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA R + +I +TGS GKTTTK+M+ LS+ + G+ NNH Sbjct: 85 VVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + + E+GMS GEI LT + RP AVIT I AHL E I Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264 A AK EI GL G +F+ + D LL + L + + + +FG + D+ + Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLSLPRHVVTFGAGEQNDYYPTDVRI 261 Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319 + S++ L G++ M V +G H N L + + D +D A+ L V Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHHVYNALAAIAVARFFGIDWEGIDAALSRLQV 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R + FT+I+++YNA+P SM+AA+ +L ++S G ++IAVLGDM Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+ +FH ++ EVL + +V+ G Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYG 398 >gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] Length = 458 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 223/451 (49%), Gaps = 37/451 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88 I+ D+R I + F A+ G ++DGH FI A++KGA +V++ + +V S +S V G Sbjct: 32 INTDTREIQKGDVFIALSGKNFDGHLFIREAIEKGASIVILEQEALVNSTYKVSHIVVG- 90 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 L A ++A R + K IIAITGSVGKTTTKE++ +L + + +YNN IG Sbjct: 91 -SALKAYQQIANWWRNKYKIPIIAITGSVGKTTTKELIAASLGMYGQVHKTYDNYNNEIG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL ++ D+ + E+GM L EIR LT +++P I +IT I AH+ E IA Sbjct: 150 VPRTLLKLSKHHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQ 209 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WK 264 AK E+ + LN DD ELL +KT K K + L K K Sbjct: 210 AKCELLSEMSLDSIAILNNDD---ELL--------MKTAMRIWKGKTITYGLNKGDIIGK 258 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++++ ++++G + + G H A N L L + L D K + V P + Sbjct: 259 LINDRT---LRVEGLNFPLPLS--GRHNAINYLAALAVTKSLNLDWKKFTKQIKVEMP-Q 312 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR ++ G L+DE+YNA SMKAA+++L R IAVLG M E+G Sbjct: 313 GRSQKNYLP---GDIILLDETYNAGLESMKAALNMLKDTPGK---RHIAVLGAMKELGVN 366 Query: 385 SQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLFI 437 S FH ++ E I ++ + A+ + + R+I V + + LF + Sbjct: 367 SSQFHREVGETAQALGIDVLYILIRDEEARAIPNGIKNIDGVRNIKVICCLSPEKLFEQL 426 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + +GD ++ K+SNS L+ + + F Sbjct: 427 INDISEGDRILFKASNSVKLKSLVEQICKYF 457 >gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] Length = 458 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 227/465 (48%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + P Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457 >gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] Length = 488 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 216/465 (46%), Gaps = 43/465 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 GI P V DSR P + A G H DGHDFI A + GA L +V G Sbjct: 22 GITPTSVVT----DSREATPGSLYVAKPGEHADGHDFIAAAFESGAVLALVERPAARPDG 77 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLR---------SKATIIAITGSVGKTTTKEMLTIAL 130 S S P V+D + A+ LA A R + T++ ITGS GKTTTK++L Sbjct: 78 S-SYPSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVVGITGSAGKTTTKDLLAGLF 136 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +S T A GSYN +GVPLT+ + + + E+G + +G IR+L +V+P I V+ Sbjct: 137 ASQGSTVAPKGSYNGEVGVPLTVFQADEGTRYLVIEMGATGIGHIRYLADMVKPDIGVVL 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH F G++ IA AK E+ EGL GT +N DD +++++ A T+ F Sbjct: 197 AVGTAHAGEFGGVDNIALAKGEMVEGLSADGTAIINLDDDRVAAMRSRTTA----TVLGF 252 Query: 251 ---GKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNML---MTLGI 302 G+ A L ++QL G V IG H N+L Sbjct: 253 SAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIGAHHTGNLLAAAAAAFA 312 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVL 360 + AD+ + K+ R+R + T+I+++YNANP SM+AA+ L Sbjct: 313 AGMSGADIAAGLS-------KQSAASRWRMERTERADGVTVINDAYNANPESMRAALRTL 365 Query: 361 SQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + G GRR AVLG M E+G+ S H + + NIS + + G AL + Sbjct: 366 ADL---GRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAV 422 Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + ++E D + + + L GD+V+ KSSNS G L Sbjct: 423 QEGSWGDECLFAENPDEAYELLNAELEPGDLVLFKSSNSVGLRHL 467 >gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] Length = 456 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 26/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+ IDSR + P F AI G + H FI V+ GA VV + D+ G P Sbjct: 28 VSGVVIDSRKVQPGYLFVAIDGERVNAHKFIPDTVKAGAMCVVSHEDL----GETDFPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ AL +A R ++ ITGSVGKT+TKEM+ L+ + +G++NN Sbjct: 84 LVESTGQALLDIAKLYRDSFDMKVVGITGSVGKTSTKEMIASVLAQKYHVHKTLGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 G+P+T+ MP D + + E+G++H GE+R L+ + P I VIT I AHL F E I Sbjct: 144 WGLPITIFDMPEDTEVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-Q 265 K+++ + ++ G+I LN DD +LL S G+ ++ FG N F+ + Q Sbjct: 204 LQEKSQMIQDMKNGGSIILNGDD---DLLSKMSPVKGVTPVF-FGMGDNCAFRADNIEPQ 259 Query: 266 CSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNML--MTLGIVSILTAD-VDTAIKALSVFH 321 + + L+ G S + + G HM N + +G LTAD + I++L Sbjct: 260 GLRGTSCTITLKDGSSFDCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSI- 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GR + ++D+ YNANP SMKA+I VL+ GR++AVLG+M E+ Sbjct: 319 --PGRNH----IIETDHMIILDDCYNANPISMKASIDVLNM----AIGRKVAVLGNMGEL 368 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQS 439 G+ +++ H ++ + N+ V G +L + + + + + I Sbjct: 369 GDTAEALHAEVGTYAAEQNVDLVCGIGDLTRSLVEEASKGANTEALWFADNESFIQAIPD 428 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 + DGD V+VK+S+ F ++++ L E Sbjct: 429 IIKDGDNVLVKASHGMNFPQIVHALEE 455 >gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] Length = 468 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 226/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 21 QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 81 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 138 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 139 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 198 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 199 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 256 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 257 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 315 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L + G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 316 EEMKEGLVTL---QMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 370 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ ISHV+ G + + P V Sbjct: 371 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 429 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 430 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 467 >gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 468 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/451 (29%), Positives = 224/451 (49%), Gaps = 29/451 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 I+ D+R + + F A++G H+DG F A+++GA V+V+ A+ + +L GV Sbjct: 31 ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90 Query: 89 ---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D L A +A A R++ ++AITGS GKTTTK++ LS K +YNN Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G+PLTL + + + E+GM +G+I L + P I ++T + H+ IE Sbjct: 151 EVGLPLTLLGITPEDTAAVVEIGMRGMGQIAALAPITAPSIGIVTNVCEVHMELLGSIEN 210 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AKAE+ + GT+ LN DD +++ S A G++ + ++G S AD + + Sbjct: 211 IAKAKAELVTAIPAGGTVILNADDPRVAAMRS-SAADGVR-VMTYGISAAADVRAEALQC 268 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFHP 322 ++ S V G+ E G H N L L ++ + ++ + L+ Sbjct: 269 MADGSRFMVTWDGERHEYAIPLPGRHNVSNALAALAAGFVLGMTPQEMQVGLTHLTA--- 325 Query: 323 KEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 ++ R ++Q G +TLI+++YNA+P+SM+A++ + + P GRRIAVLGDM E+ Sbjct: 326 -----EKMRYEVHQIGAWTLINDAYNASPSSMRASLETTAALYP---GRRIAVLGDMLEL 377 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLF 436 G ++ H D+ + + V G H A P +++ + + Sbjct: 378 GAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAEAAGCP---ACYHAASHADAAAY 434 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++S L+DGD V+ K S ++I L E Sbjct: 435 LRSHLMDGDTVLFKGSRGMRMEQIIAALTGE 465 >gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] Length = 466 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 225/461 (48%), Gaps = 22/461 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L A G I + I IDSR + F I G + D H F+ G Sbjct: 12 TVKELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAVYNSGC 71 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + + +I + VDD AL L R + ++ +TGSVGKTTT+EM Sbjct: 72 KVAISSKKDIFLKKDFNIVL--VDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKTTTREM 129 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + +ALS +K + ++N+ +GVP+TL+R+ D + G+ ELGMS E+ + +V Sbjct: 130 VALALSDLK-VFKTPNNFNSQVGVPITLSRIK-DEEIGVIELGMSKFDEMEKIAKIVNCD 187 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++T I AH+ N E I + K I +G+++ +FLN D+ +LL GI Sbjct: 188 CALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADN---DLLNNSPKREGI- 243 Query: 246 TIYSFGKSK-NADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 IY F +K N D + + E ++GK++ V + G H N L L + Sbjct: 244 -IYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEHQISNALAALAV 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLS 361 +++A K L F RG +R L +G T+ID++YNA+P SMKA+IS+L Sbjct: 303 ADHYNLSIESAAKHLEDF-----RGFSHRQELIIRGGLTVIDDTYNASPDSMKASISILK 357 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPR 420 + R+IA+L DM E+GE ++ H ++ + ++ + V+ G + + Sbjct: 358 GFNAK---RKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEIISNINE 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ E + L FI+ L DGDV ++K SNS + ++ Sbjct: 415 NVLTKSFEDNETLENFIREYLKDGDVCLLKGSNSMKLFDVV 455 >gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 455 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 29/459 (6%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ LS + Sbjct: 74 --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F ++IA AK EI + L++ G N D+ E AK K + + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239 Query: 258 FQLRKWKQ---CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 F R+ + +S+M ++ G + + IG H N L + + + + Sbjct: 240 FGFREEDTVFATTFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +AL+ F P R + + + + ++D+ YN+NP +++A + Q+ GRR Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVRAVTTSFGQVMVEDGGRR 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426 IAVLGDM E+G+ S H LA L I+ ++L G + L DAL ++H + Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEENLHYYP 416 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] Length = 458 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 138/434 (31%), Positives = 209/434 (48%), Gaps = 28/434 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GI+IDSR++ P + F A+ G DGH++I AV GA +V + A + P Sbjct: 25 VSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEHPVDADV-----PCL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V L AL+ + A+R S++ +IAITGS GKTT K + + T A G+YNN Sbjct: 80 RVSSCLAALSDIGRASRDFSRSLVIAITGSCGKTTVKNLCRSIFTQAGPTVATAGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTLAR+ + F I E+G + G+I L L RP I + AHL F + ++ Sbjct: 140 IGVPLTLARLDDETRFAIVEMGATRRGDIAHLCALARPSITTVLNAMEAHLEGFGSVADV 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265 A KAEIF+GL GT LN D + L + + G T+ YS G + D + + Sbjct: 200 ADIKAEIFDGLGAQGTAILNLDQPWVSLWRERIARAGADTVSYSLG--EEGDITVADLRD 257 Query: 266 CSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 Q S +++ G+ V G H N L + + D+ T + L + Sbjct: 258 LGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAAALATAAGLDLGTIVTGLEQAEAES 317 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + ++ TLID+SYNANP S++AAI +L+ + G + +LG+M E+GE Sbjct: 318 GRLRAESLGEDK---TLIDDSYNANPGSVRAAIDLLAATA----GNSLLILGEMLELGEE 370 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQS 439 S H ++ ++ + + DAL ++ + T D L + Sbjct: 371 SAERHREMGARAREQGVT-------RFVGIGDALKPAVETFGSTGQWYPTRDALTAALPE 423 Query: 440 SLVDGDVVVVKSSN 453 L D ++VK S Sbjct: 424 LLEQSDTLLVKGSR 437 >gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 7 QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 67 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 242 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I + Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 301 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 302 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 356 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G FH ++ +++ ISHV+ G + + P V Sbjct: 357 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 415 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 416 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 453 >gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] Length = 459 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/441 (31%), Positives = 221/441 (50%), Gaps = 17/441 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G++IDSR ++P + F A+ G DGHDF+ A+ +GA +V + +SIP Sbjct: 26 SGVAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVERPV-----QVSIPCLQ 80 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + L AL+++ A+R S + ++AITGS GKTT K + S T A G+YNN I Sbjct: 81 VSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCRSIFSEAGSTVATAGNYNNEI 140 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTLAR+ D + I E+G + G+I L L RP I + AHL F + ++A Sbjct: 141 GVPLTLARLQDDTRYAIVEMGATKRGDIAHLCTLARPSITTVLNAMEAHLEGFGSVADVA 200 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQC 266 KAEI++GL +G +N D + L + + G + + YS S +AD + ++C Sbjct: 201 DIKAEIYDGLGSSGAAIVNLDQPWVPLWRDRIAQAGAQALSYSLDDS-SADLYVSGLQEC 259 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E S + ++G+S + + G H N L + +D + L + G Sbjct: 260 GLEGSAFTLHIRGESRALKYPLPGRHSVANALAAAALAIAAGLSLDQIVVGLEHAQAEPG 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + R ++ TLID+SYNANP S++AAI++L+ + G + +LG+M E+G S Sbjct: 320 RLQSERLGNDK---TLIDDSYNANPGSVRAAITLLAATA----GESLLILGEMLELGAES 372 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H ++ E+ L I+ G V +A + + + + L + L D Sbjct: 373 PERHAEMGELARLSGITRFVGVGEAVRPAVEAF--GANGQWFASREALTPKLADLLGASD 430 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 ++VK S +++ L E Sbjct: 431 TILVKGSRGAAMESVLSALRE 451 >gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I + Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G FH ++ +++ ISHV+ G + + P V Sbjct: 361 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 457 >gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 455 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 190/385 (49%), Gaps = 29/385 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+SIDSR+I + F A+ GP +DGHD++ KGA +V ++ S ++P Sbjct: 26 SGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVPDS----TLPQLL 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL +L R + A+TGS GKTT KEML L + +A G+ NN + Sbjct: 82 VKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRGPVHATRGNLNNDL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL + + + ELG S +GEI + + RPH+A+I AH+ F G E+I Sbjct: 142 GAPLTLLELAPEHTAAVIELGASRIGEIAYTVAMTRPHVAIINNAGTAHVGEFGGPEKIV 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----RK 262 AK EI EGL+ G LN DD F + KA++ + + SF +ADF R Sbjct: 202 EAKGEILEGLDSAGIAVLNLDDKAFPIWKARAAG---RQVLSFALTDSSADFFASDIGRD 258 Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + C K +E V + +G H N L + + + L+ Sbjct: 259 ARGCPSFKLHSP----KGVEAVQLNLLGTHNVANALAAAAAAHAMGVSLFGIVTGLNAVQ 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +G R L + +ID++YNANP SM AA+ +L+ S GR + VLGD+ E+ Sbjct: 315 PVKG---RTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGFS----GRTVLVLGDIGEL 367 Query: 382 GELSQSFHIDL-----AEVLSLYNI 401 GE ++ H ++ +V +LY + Sbjct: 368 GEWAEQGHREVGAYAAGKVSALYAV 392 >gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces lividans TK24] gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] Length = 471 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 209/449 (46%), Gaps = 36/449 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVDD 90 DSR P F A G DGHDF V+ GA VA +GS + +P VDD Sbjct: 34 DSREAGPGSLFVAFVGERADGHDFAARVVEAGA---------VAVLGSRPVGVPAIVVDD 84 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V AL LA R T++A+TGS GKT+TK+++ L T GS NN +G+P Sbjct: 85 VQAALGALARHVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLP 144 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LT + F + E+G +G IR+LT L P I + + AH+ F G E+IA AK Sbjct: 145 LTALTATDETKFLVLEMGARGIGHIRYLTELTPPKIGAVLNVGSAHIGEFGGREQIAQAK 204 Query: 211 AEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC- 266 E+ E L E+ G LN DD + +++ A + FG+S AD + + Sbjct: 205 GELVEALPPAEEGGAAILNADDPLVRAMASRTKA----KVILFGESGEADVRAENVRLTD 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + Q + + +V G H N L + L D ALS + G Sbjct: 261 TGQPSFSLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIATALS----EAGS 316 Query: 327 GKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383 R+R + + T+++++YNANP S KAA+ L + G+GRR AVLG M E+G+ Sbjct: 317 LSRWRMEVTERPDGVTVVNDAYNANPESTKAALRALVAM---GKGRRTWAVLGKMAELGD 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 + + H + + N+S + G + A + VH S+ + L + Sbjct: 374 EALAEHDAVGRLAVRLNVSKLVAVGGREARWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 432 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +S L GDVV+VK+S S G + LLE Sbjct: 433 RSELRPGDVVLVKASRSVGLESVATALLE 461 >gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] Length = 458 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/465 (28%), Positives = 227/465 (48%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + P Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457 >gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] Length = 469 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 156/493 (31%), Positives = 219/493 (44%), Gaps = 54/493 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T ++ +A G IG Q V +S DSR +AP E F +KG +DGHDFI A + Sbjct: 3 MFTLQEIAEATGGRLIGEA-QAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAGR 61 Query: 64 GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G ++ +A+ G V+D L AL LA R R ++A+TGS GKTTT Sbjct: 62 GVTAFLMAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ G+ NN IG+PLTL R+ + + E+GMS GEI L + Sbjct: 122 KEMLARILAQTGPGLKTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGEIDRLAEIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----------- 231 P + +IT PAHL +E +A AK E+F L++ N DD Sbjct: 182 DPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDPLVSSCPTHLNVT 241 Query: 232 ---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 F L A+ + IK++ G+S F LR L +V Sbjct: 242 RLTFGLRGAEVSSASIKSLGKEGES----FTLR--------------LPDGEEQVTLKAY 283 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L L L F P + KR++ G TLID+SYNA Sbjct: 284 GRHNIYNALAAAAAAHALGVPGQVIRLGLEEFTPYD---KRFQLEEVAG-VTLIDDSYNA 339 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNISH 403 NPASM AA++ L +++ G R AVLGDM E+G ++ H +L A V LY Sbjct: 340 NPASMAAALATLKEVA--GGARTAAVLGDMLELGLGTEEAHRELGGKAAATVERLY---- 393 Query: 404 VWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 L G K AL + + ++ T + L + + L GD V+ K S ++ Sbjct: 394 -LLGGLATEVEKGALEAGLSPERIVHAATHEELARELAAWLEPGDCVLFKGSRGMKMEKV 452 Query: 461 INLLLEEF-PAIQ 472 + E P Q Sbjct: 453 ATAVKEALAPKTQ 465 >gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 535 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 143/450 (31%), Positives = 212/450 (47%), Gaps = 42/450 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 + DSR + P F A G DGH+F+ A KGA L +V + G L P VDD Sbjct: 33 TTDSREVIPGTLFVAKPGEVTDGHNFVSGAFDKGAVLALVERPVKDERGIL-YPSIQVDD 91 Query: 91 VLGALNKLAVAA--RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ A+ K+A A ++RS T+I ITGS GKTTTK++L LSS +T A +GSYN Sbjct: 92 VVLAMGKIAQYAVEKMRSLGDLTVIGITGSAGKTTTKDLLAAILSSQGETIAPVGSYNGE 151 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLT+ R + + E+G H+G I +L ++V P VI + AH F G++ I Sbjct: 152 VGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIVHPDHGVILKVGTAHAGEFGGVDNI 211 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-- 264 K E+ EG+ GT+ LN DD + A++ A + FG + ++ Sbjct: 212 ERTKGELAEGIRTGGTLILNADDERVARMSARASA----PVTYFGVGEKPQYERYTAALG 267 Query: 265 -QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ E L+ E+ IG H N+L + T + + ++ Sbjct: 268 LHTNDAGCPEFTLRLPDASEYEISSKLIGEHHVCNIL------AAATVAYNAGVPGDAIA 321 Query: 321 HPKEGRG--KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVL 375 H G ++R A T+I+++YNANP SM AA+ L+Q+ + RR AVL Sbjct: 322 HALNNTGALSKWRMARTDRADGVTVINDAYNANPESMTAALRTLAQLGRGAKPRRTWAVL 381 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---------- 425 G M E+GE S H L ++ NIS + G +A P H Sbjct: 382 GAMLELGEASLEEHDRLGRLVVRMNISKLIAVG------NEAKPAYNAAHLEGSWGNEAT 435 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + ET +++ L GD+V+ KSSN Sbjct: 436 WVETPQEALNILRAELRSGDIVLFKSSNGA 465 >gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC 27126] Length = 431 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 186/380 (48%), Gaps = 40/380 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 + A+KGP+++GHDFI A + GA V+ + D+ + S+PV V+D AL L A Sbjct: 4 YLALKGPNFNGHDFISTAEKAGASAVIASEDV-----ATSLPVIMVEDTKEALGLLGAAV 58 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 + IAITGS GKTT KEM L A G++NN IGVPLTL R+ ++ Sbjct: 59 KAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFNNDIGVPLTLLRLEPQHEY 118 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + ELG +H+GEI + T+LV+P +A I A +HL F + +A AK+EIF+GL G Sbjct: 119 AVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGSDGV 178 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSE------QSWM 272 +N D F E + K T +S + +ADF+ C+ Q M Sbjct: 179 AVVNVDSQFSEFWQGKLKQTKTLT-FSPQQKNDADFRAEDITIGLDGCAAFHLVCPQGDM 237 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 +QL G H N L+ + + A ++ L GR Sbjct: 238 SIQLTIP---------GVHNVGNALVAAALTLQVGASLENVRDGLLAMKQVSGR------ 282 Query: 333 ALNQGFFT----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 LN T L+D++YNAN AS+ AAI LS S G R+ VLGDM E+GE ++ + Sbjct: 283 -LNVKQLTEQVRLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKELGEKARFY 337 Query: 389 HIDLAEVLSLYNISHVWLSG 408 H + E I++++ G Sbjct: 338 HEQVGEYAKQKGINYLYTMG 357 >gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ ISHV+ G + + P V Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] Length = 458 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ ISHV+ G + + P V Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] Length = 454 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 212/449 (47%), Gaps = 33/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I D+RS+ + F A++G +DGH FI A+ GA + VV V +G ++ F Sbjct: 30 INNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGA-IAVVTDRPVEGLGE-TVAQF 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A +A R R II +TGSVGKTTTKE++ LS + +YNN Sbjct: 88 LVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFGNVHKTRANYNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL + D DF I E+ M G+I L + +P I +IT + AH+ I Sbjct: 148 IGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGSELAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ T LN D+ AL ++T F + K + L Sbjct: 208 AEAKCELLAHQPPESTAILNRDN-----------ALLMETAQRFWQGKTITYGLEGGDVH 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + L G S+ + G+ H A N L + + L D L+V PK GR Sbjct: 257 GTVDGENLILDGVSLPLPLAGV--HNASNYLAAIAVAQCLGLDWQQLQSGLTVELPK-GR 313 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +RY+ + L+DE+YNA SM A++ +L+ RR+AVLG M E+G+ Sbjct: 314 ARRYQWGQD---VVLLDETYNAGLESMLASLDLLANTPGK---RRLAVLGAMKELGDYGP 367 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK---DALPRSIH-VHYSETMDG--LFLFIQSS 440 +FH + + + L G +LA DA+ + V DG L ++++ Sbjct: 368 TFHQRVGA-----KVKALGLDGLFLLANDPNTDAIAAGANGVETQSFSDGPSLVAALKTT 422 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 L GD ++ K+SNS G +++ LL E P Sbjct: 423 LQPGDRLLFKASNSVGLGAVVSQLLAENP 451 >gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/465 (28%), Positives = 227/465 (48%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + P Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITML 457 >gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] Length = 454 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 7 QMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 67 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPGMNLAAETV-TF 242 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 301 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 302 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 356 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ ISHV+ G + + P V Sbjct: 357 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKA 415 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 416 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 453 >gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] Length = 454 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 219/442 (49%), Gaps = 15/442 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R I + I+G +DGH F+ AV+ GA + D+ +L PV Sbjct: 23 IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDVANPPENL--PVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA R + ++ +TGS GKT+TK+++T L++ K G++NNH Sbjct: 81 FVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT I AHL + E I Sbjct: 141 IGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G N D+ + L +T+ +FG ++ D+ Sbjct: 201 AEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TFGDARANDYYPTTVTLQ 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + ++ + +++ +G H N L ++ I + + L Sbjct: 259 ATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMT--- 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 315 GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAKKIVVLGDMLELGDQEV 372 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSLV 442 FH ++ +++ ISHV+ G + + P V + + L +Q+ + Sbjct: 373 QFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVKAYDNKEELVKDLQAVVD 431 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 DVV++K+S +I +L Sbjct: 432 VKDVVLIKASRGMKLEEVITML 453 >gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] Length = 451 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 213/439 (48%), Gaps = 25/439 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N I+ D+R I + F A+KG +DGH FI +A+ KGA V+V+ + V+ I S I Sbjct: 25 LINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAIAKGAIGVIVDHE-VSVISSKRITQ 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L A ++A R + II ITGSVGKTTTKE++ L K + +YNN Sbjct: 84 IIVKDTLIAYQEIANWWRNKLTIPIIGITGSVGKTTTKELIAAVLGVYGKVHKTQANYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP TL + + D+ + E+ M GEI L+ + RP I +IT + AH+ E Sbjct: 144 EIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSREA 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK E+ + K LN+DD ++T + K + L Sbjct: 204 IAEAKCELLAEMPKDSIAILNHDDQRL-----------METAARIWQGKTITYGLEGGDI 252 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E ++ L+ + ++ G H A N L L + L D + + ++V PK G Sbjct: 253 TGELLDNQI-LRVEGIDFPLPLPGRHNALNYLAALAVTKQLNLDWNLLTQGVTVDLPK-G 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++Y + N L+DE+YNA SMKAA+ +L R +AVLG M E+GE S Sbjct: 311 RSQQYSLSNN---IVLLDETYNAGLESMKAALQLLKDTPGK---RHLAVLGTMKELGEAS 364 Query: 386 QSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 H + +AE L + + ++ + A+ + ++I T + L + + Sbjct: 365 AQLHQEVGAMAEKLGIDGL-YILVDDPEAQAITQGV-KTIETECFPTHEHLIERLTQVIQ 422 Query: 443 DGDVVVVKSSNSCGFYRLI 461 GD ++ K+SNS G R++ Sbjct: 423 PGDRILFKASNSVGLNRVV 441 >gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] Length = 536 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 196/393 (49%), Gaps = 30/393 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + DSR I F AI G H DGHD++ +A + GA + +V +V I V Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIV-EHVVEGTNLNQIVVNN 114 Query: 88 VDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + LG L K L + L TII ITGSVGKTTTK+ML LS++ +T A +GS+NN Sbjct: 115 SVEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLDETVAPVGSFNN 174 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IG+PLT ++ + F I E+G +H+GEI LTH+ P +A++ + AHL F +E Sbjct: 175 NIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVER 234 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNA-------- 256 IA AK+EI GL G LN DD + + A S + K + FG+ +KN Sbjct: 235 IAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNAKNGLLESASKD 291 Query: 257 DFQLRKWK---QCSEQSWMEVQLQGKSMEVVHH-----GI-GYHMAQNMLMTLGIVSILT 307 D+QL ++ + + S ++V+H I G H N L + L Sbjct: 292 DYQLSASNIKLDSFGKAVFTITERSNSSDLVNHIEVHLAIQGEHNVMNALAAANVARYLG 351 Query: 308 ADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-----S 361 +D LS V H R + + N FTLID+S+NANP SMKA I L Sbjct: 352 MTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAYEND 411 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 S + RIAVLG M E+G H ++ E Sbjct: 412 SCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444 >gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc fallax KCTC 3537] Length = 451 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/448 (30%), Positives = 223/448 (49%), Gaps = 28/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++ DSR + + F A+ + DGHD+I +A+ GA V+V++ P Sbjct: 24 ISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENALANGAHAVLVDSQHQLK---EDWPAV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ KL R + ++AITGS GKTTTK+M + +T+ +YNN Sbjct: 80 IVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDMAAEIANQQYRTFKTPENYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL MP + I ELGM G++ L+HLV P IA+IT I AH+ F I Sbjct: 140 IGVPMTLLSMPESTEVLIVELGMDRPGQLTVLSHLVEPDIAIITMIGEAHIEFFKTRRNI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 A AK EI GL+ GT+ + D+ E+ + H + +FG + +AD Sbjct: 200 AKAKLEIINGLKAEGTLIIPNDEPLLTQEISHIEQH------VKTFG-TIDADVNATDIS 252 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + QS + Q ++ + +G + N L + ++L D+ A KAL F + Sbjct: 253 VENNQSQFNINQQKFAIPM----LGRYNIMNALAAITAGNLLHIDLKNAQKALLDFDLTK 308 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + T+I + YN+NP ++KA ++ L +S +G+R VLGDM E+G+ Sbjct: 309 NRTEILHTTHG---VTIISDVYNSNPTAVKAVLATL--VSREVQGKRYVVLGDMLELGQQ 363 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 + H LAE + +I V+L G + + K +H + + +D L + Sbjct: 364 AGIMHAGLAESVQESHIDGVYLVGELMRKHLYPILQKHFDQTQLHQYAKDQLDDLVSDLN 423 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 GDV+++K+S+ R+++ L++ Sbjct: 424 KLGQQGDVMLLKASHGIHLERVVDELMK 451 >gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] Length = 458 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457 >gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] Length = 455 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 29/459 (6%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHEGM 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ LS + Sbjct: 74 --PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F ++IA AK EI + L++ G N D+ E AK K + + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAKI------------KQEKST 239 Query: 258 FQLRKWKQCSE---QSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 F R+ +S+M ++ G + + IG H N L + + + + Sbjct: 240 FGFREEDTVFATIFRSYMHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHFGENDE 299 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +AL+ F P R + + + + ++D+ YN+NP +++A + Q+ GRR Sbjct: 300 QIAQALANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVRAVTTSFGQVMVEDGGRR 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426 IAVLGDM E+G+ S H LA L I+ ++L G + L DAL ++H + Sbjct: 357 IAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEENLHYYP 416 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 417 QDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] Length = 458 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457 >gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera] Length = 510 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 224/467 (47%), Gaps = 23/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 ++PLWT ++ +A+ G IV +G I D+R++ P + FFAI+G ++D H+FI Sbjct: 48 ISPLWTVDEIAEAVNG---TIVQRGPPGPICTDTRTLEPGQWFFAIRGENFDAHEFITPE 104 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + V+ + + + + G + L +L K+A AR + ++ +TGS GKT Sbjct: 105 LGHKGCVGVIGNWVCPNWDKGFVEMGG--ETLTSLEKMANYARNKFHGCLVGVTGSAGKT 162 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT+ M+ + L S+ + G+ NN IGV L+L +P +V F + ELGM GEI L Sbjct: 163 TTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELAR 222 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RP I VI + AHL NF+ +EE+A AK EI + LN DD L Sbjct: 223 KARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVPH- 281 Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+K + FG+ D + K + ++ + +E V G H+AQN T Sbjct: 282 --GVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACAT 338 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + +LS F P R + + +I++ YNANP S KAAI + Sbjct: 339 AAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVSTKAAIEL 395 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416 L I +G+R+A+LGDM E+G+ H +LSL SH + L G L + Sbjct: 396 LKNID--CKGKRVAILGDMLELGQAETVSH---EMMLSLCCDSHFDLIALVGKRFLRAAE 450 Query: 417 ALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 L ++ YS + L I L DV++VK S +++ Sbjct: 451 NLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVV 497 >gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 458 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 149/428 (34%), Positives = 217/428 (50%), Gaps = 26/428 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F + G +DGHD+I GA L + + S+ I + V+D Sbjct: 33 DSRQKVNKGLFVPLIGEKFDGHDYIDDVKAMGA-LATLTSKKNDSVHQDLITI-AVEDTQ 90 Query: 93 GALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL L VA SK IIAITGSVGKTTTKEM+ L + K + +G+YNN IGVP Sbjct: 91 KAL--LDVARYYSSKVDRPIIAITGSVGKTTTKEMVAAVLETTLKVHKTVGNYNNEIGVP 148 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T+ + D + E+GM+H GE+ LT +V+P AVIT I AH+ + E I AK Sbjct: 149 KTMFALSEDDQVSVIEMGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESREGILKAK 208 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EI EGL+ GT+ +N D+ LL K I +FG D+ + + Sbjct: 209 LEILEGLKPEGTVIINGDEP---LLMGKKQDNWI----TFGFDPRLDYCVSNVVTYGVFT 261 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 V ++ G HMA N L+ + I L D IK ++ + ++ R Sbjct: 262 EAVVYTPNSVFKIKIPSPGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKMR---- 317 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 N G FT+ID++YNAN SM AA+ VL + R+IA+LGD+ E+G+ S+S H Sbjct: 318 MNITNVGNFTVIDDTYNANYDSMVAAMKVLGNYLT--KNRKIAILGDIFELGKYSESIHR 375 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQ--SSLVD-G 444 +L E ++ I+ V+ G + DA+ P + +V S+ LFI+ S ++ G Sbjct: 376 NLGEYIASSRINCVFTIGDAAAYITDAIINSPNNKNV-TSKHFKNKELFIKEWSQYINAG 434 Query: 445 DVVVVKSS 452 D+V+VK+S Sbjct: 435 DIVLVKAS 442 >gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] Length = 456 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 225/467 (48%), Gaps = 22/467 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ G I P VNG+ DSR + F A++G DGHDF L A+++G Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQG 63 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L+V T V + V V D + AL +LA R R ++A+TGS GKT+TK Sbjct: 64 ATALLVTKTVTVPP----QVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KT G+YNN +G+PLTL + + E+GM GEI L L + Sbjct: 120 DMIAAVLNTRYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLLARLAK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I AHL ++ IA+AKAE+ + + G LN D EL S G Sbjct: 180 PTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSP--ELRNQVSRCQG 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 YS + D R + ++ G + E+ G H N + +G+ Sbjct: 238 QVWFYSI--NGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVG 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L ++ L+ E G R + T+I++ YNANP+S KAA+ VL+++ Sbjct: 296 LRLGIPFTDIVRGLAQV---ELTGMRLEI-IKANNMTVINDVYNANPSSTKAALKVLAEV 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDAL 418 +P GR+IAVLG+M E+G L++S H ++ E +L ++ + G A+K L Sbjct: 352 AP---GRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKGGL 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 P VH+ + ++ + GD ++VK S S ++ L+ Sbjct: 409 PGD-RVHHCDNNKLAIEVLRQVMQPGDTILVKGSRSMHMEEIVQALV 454 >gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412] gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412] gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] Length = 452 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + DF + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L I+S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALIARIKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Pseudomonas entomophila L48] gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Pseudomonas entomophila L48] Length = 455 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 179/368 (48%), Gaps = 26/368 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+SIDSRS+ + F A+ GP +DGHD++ KGA +V + I + +P V Sbjct: 27 GVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVERE----IADVDLPQLVV 82 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D AL +L R ++AITGS GKTT KEML L + +A G+ NN +G Sbjct: 83 ADSRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLAAILRTRGPVHATRGNLNNDLG 142 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 PLTL + + + ELG S +GEIR+ L +P + +I AH+ F G E+I Sbjct: 143 APLTLLEIAPEHSAAVIELGASRMGEIRYTVGLTKPQVVIINNAGTAHVGEFGGPEKIVE 202 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----RKW 263 AK EI EGL + GT LN D F++ + ++ G I SF + ADF R Sbjct: 203 AKGEILEGLGEGGTAILNLADKAFDIWRKRA---GTHRILSFALDNPQADFHASDIGRDA 259 Query: 264 KQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + C L G S+ V + +G H N L + + L+ Sbjct: 260 RGCP-----SFTLHGPDGSVPVQLNLLGIHNVSNALAAAAAAHAVGLSLSGIAAGLNAVQ 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +G R + +ID+SYNANP SM AAI +L+ S GR + VLGD+ E+ Sbjct: 315 PVKG---RTVAQVAPSGVRVIDDSYNANPTSMCAAIDILAGFS----GRTVLVLGDIGEL 367 Query: 382 GELSQSFH 389 G+ ++ H Sbjct: 368 GQWAEEGH 375 >gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 436 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/425 (29%), Positives = 212/425 (49%), Gaps = 31/425 (7%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + + G + + +N IDSR + + F +KG + DGH +I A++KGA Sbjct: 6 LKKIVNGEFLNLKENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYF 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + G L V D AL ++ R + KA +I ITG+ GKT+TKE++ Sbjct: 66 SEKPLNFKNGIL------VKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKELMNFV 118 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS++ TYA G+YNN IGVPLTLA +P ++D I E+G +G+I +L +V I+V+ Sbjct: 119 LSNLASTYATQGNYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQDISVL 178 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIY 248 ++ H+ F E + K EIF N D + +L ++ K Sbjct: 179 VSVGHGHVGKFGSFENVIKGKGEIF-----------NCGD--YSVLPSELKKFYNPKNPI 225 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++G ++ D ++R K + + ++ + +E+ + +N+ G++ Sbjct: 226 TYG--EDGDIEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLYHFGY 283 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D ++ L F GRG+ +N G FT+ID+SYNANP S+K AI +L+ + E Sbjct: 284 DPIKNLEVLKDFKSSSGRGE----IINIGNFTIIDDSYNANPLSVKNAIDILNSM----E 335 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 G +I VLGDM E+G+ SQ H ++ + L++ I ++ L G + + + V + + Sbjct: 336 GFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRVKHFD 395 Query: 429 TMDGL 433 DG+ Sbjct: 396 NKDGI 400 >gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Kitasatospora setae KM-6054] Length = 467 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 147/477 (30%), Positives = 224/477 (46%), Gaps = 27/477 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + QA+ G G PQ + G + D+R I P F ++G DGHD+ AV G Sbjct: 5 TLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAKAVADG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTK 123 A + V+ T V +P VDDV+ AL +LA A R+ I+ +TGS GKT+TK Sbjct: 65 A-VAVLATRPV------GVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSGKTSTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L+ +T GS NN IG PLT R+ + E+G H G+I +LT + Sbjct: 118 DLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPSTRHLVMEMGARHKGDIEYLTGITP 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++ I AHL F E IA AK E+ E L G LN DD + +++ A Sbjct: 178 PTVGLVLNIGTAHLGEFGSREGIAEAKGEMVEALSPEGVAVLNADDPLVRAMSSRTRA-- 235 Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + FG+S +A + + + + + S V G H N L + Sbjct: 236 --RVVLFGESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNALAAAAV 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVL 360 L VD +ALS + G R+R + T+++++YNANP SM+AA+ L Sbjct: 294 AVELGMPVDRVAEALS----EAGALSRWRMEVVDRADGLTVVNDAYNANPESMRAALRAL 349 Query: 361 SQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + ++ G RR AVLG+M E+GE S H + + +I+ + G A + Sbjct: 350 ATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGREAARMELG 409 Query: 419 PRSIHVHYSETM-----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 R+ E++ D ++S + GDVV+VK+S S G R+ LL + A Sbjct: 410 ARNEGSWGEESVLVSDADAAIELLRSQVRPGDVVLVKASRSVGLERVAEALLADGAA 466 >gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] Length = 458 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 133/466 (28%), Positives = 229/466 (49%), Gaps = 20/466 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V T + + + ++PV V+D L AL LA R + ++ +TGS GKT+T Sbjct: 65 A----VATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L Sbjct: 121 KDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLA 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + L Sbjct: 181 RPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNL 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +T+ +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 AAETV-TFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + K L G R T+I+++YNA+P +M+AA +++ Sbjct: 298 AKHFGVTWEEMKKGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNG 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----L 418 + G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 355 LD--GFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINF 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P V + + L +Q+ + DVV++K+S +I +L Sbjct: 413 PNE-RVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEIITML 457 >gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 771 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 222/459 (48%), Gaps = 23/459 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 ++PLWT ++ +A+ G IV +G I D+R++ P + FFAI+G ++D H+FI Sbjct: 309 ISPLWTVDEIAEAVNG---TIVQRGPPGPICTDTRTLEPGQWFFAIRGENFDAHEFITPE 365 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + V+ + + + + G + L +L K+A AR + ++ +TGS GKT Sbjct: 366 LGHKGCVGVIGNWVCPNWDKGFVEMGG--ETLTSLEKMANYARNKFHGCLVGVTGSAGKT 423 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT+ M+ + L S+ + G+ NN IGV L+L +P +V F + ELGM GEI L Sbjct: 424 TTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMELAR 483 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RP I VI + AHL NF+ +EE+A AK EI + LN DD L Sbjct: 484 KARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVPH- 542 Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+K + FG+ D + K + ++ + +E V G H+AQN T Sbjct: 543 --GVKKVL-FGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACAT 599 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + +LS F P R + + + +I++ YNANP S KAAI + Sbjct: 600 AAVAVALGVSLPQVGISLSRFIPVSMRSE---LEVAKTGIKIINDVYNANPVSTKAAIEL 656 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416 L I +G+R+A+LGDM E+G+ H +LSL SH + L G L + Sbjct: 657 LKNID--CKGKRVAILGDMLELGQAETVSH---EMMLSLCCDSHFDLIALVGKRFLRAAE 711 Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 L ++ YS + L I L DV++VK S Sbjct: 712 NLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSR 750 >gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] Length = 458 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 225/459 (49%), Gaps = 18/459 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYS 249 I AHL + E IA AK EI GL++ G N D+ LL + + + T + Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNLATETVT 245 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 246 FGDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVT 304 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + L G R T+I+++YNA+P +M+AA +++ + G Sbjct: 305 WEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFA 359 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVH 425 ++I VLGDM E+G+ FH ++ +++ ISHV+ G + + P V Sbjct: 360 KKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE-RVK 418 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 419 AYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] Length = 462 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 132/432 (30%), Positives = 216/432 (50%), Gaps = 17/432 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ DSR I + F + H DGHD+I +A+ GA + +D + L+IP Sbjct: 28 LTGVCFDSRKIQAGQLFVPLVAEH-DGHDYIDNAIAGGASATLWASDHADRL-PLTIPAL 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD+L A +L+ + +IA+TGS GKTTTK+M+ LSS ++NN Sbjct: 86 VVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTTTKDMIAAILSSTFNVTKTQDNFNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ +M + +F + E+GM G++ FL+ L RP +AVIT I AH+ F ++I Sbjct: 146 IGLPYTILQMESNTEFLVAEMGMDRPGQLDFLSKLARPDVAVITMIGEAHIEFFGTRDKI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQ 265 A AK EI GL+ G + D+ LL ++ + I +FG+ + D K Sbjct: 206 ADAKMEITHGLKADGFFVYDGDEP---LLTERAQQVDESVIKATFGRKDSNDVFAIDSKD 262 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 Q+ V L + ++ IG + N L + + I L+ F + Sbjct: 263 GQYQTQFHVNLWPE-IDFTIPMIGDYNVNNALAAISVGRIFRIHPQMMADKLAKFDLTKN 321 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + + ++ + YN+NP + K ++ + +GRRIAVLGDM E+G S Sbjct: 322 RTQWLSGSKGE---RILSDVYNSNPTAAKEVLTAFKNTTT--KGRRIAVLGDMLELGTQS 376 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440 ++ H LA+ L +I V+L G + AL + L P ++H + ++ +D L +Q+ Sbjct: 377 KAMHASLADALDPASIPVVYLIGADMDALYEKLKPVYAPENLHYYQADQLDELTSDLQAE 436 Query: 441 LVDGDVVVVKSS 452 L D V++K+S Sbjct: 437 LSADDEVLLKAS 448 >gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] Length = 458 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457 >gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter uraniireducens Rf4] gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter uraniireducens Rf4] Length = 468 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 190/388 (48%), Gaps = 14/388 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T ++++A G IG V+G+S DSR +A E F A+KG +DGHD++ AV + Sbjct: 1 MFTIDEIIEATGGTRIG-SGNDAVSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVAR 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V D +A + ++ V D L AL LA R R ++ ITGS GKTTT Sbjct: 60 GVRAFLVAADRLAGKQPPNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ G+ NN IG+PL L R+ + + E+GMS GEI L + Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSEPGEIDRLAEMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT AHL + +E +A AK E+F L+ G N DD A + Sbjct: 180 NPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDPLISRCPAPA--- 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+K + SFG + A+ + + ++L G + V G H N L Sbjct: 237 GVKRL-SFGL-RGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L D + L F P + KR+ +G L+D+SYNANPASM AA+ L Sbjct: 295 AAHLLGVDPELIRSGLEEFTPYD---KRFSLEEIRGVV-LVDDSYNANPASMAAALVTLR 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH 389 I E R IA+LGDM E+G S + H Sbjct: 351 DIRE--ESRAIAILGDMLELGTGSVAAH 376 >gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 221/463 (47%), Gaps = 31/463 (6%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +QG +G ++ +S D+R I P+ F A+ G +D H F A+ GA ++V Sbjct: 13 VQGQLLG--ADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERA 70 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + + + V + AL KL + + IAITGS GKTT KEM+ LS+ Sbjct: 71 LDVDVAQIV-----VSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAK 125 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + G++NN IGVPLTL R DF + ELG +H+GEI + T LV+P +A++ +A Sbjct: 126 GQVLYTAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQLVKPDVALVNNVA 185 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-K 252 AHL F ++ + AK EI++GL T +N D EL S L K + +F Sbjct: 186 AAHLEGFGSMDGVKQAKGEIYQGLAPGKTALVNLDSHGGELW---SQVLVDKHVKTFSVN 242 Query: 253 SKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTAD 309 +NADF + Q E S++ QG+ + V GI G H N L + + A Sbjct: 243 QQNADFFASQIALNQAGEASFILHTPQGE--QPVTLGILGQHNVSNALAASALAMEMGAS 300 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ L+ +GR + LID+SYNA+ +MKAAI +L+ S G Sbjct: 301 IEEVAVGLAQLSAVKGRVDVSQLT---PMIRLIDDSYNASVPAMKAAIELLASFS----G 353 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R +LG+M E+G S + H + E + + +V G + H+S Sbjct: 354 CRWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDARVISQQCQGQ---HFSTH 410 Query: 430 MDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 D + FI+ L V++VK +NS G +++ L E+F Sbjct: 411 QD-MLTFIEQQLEVRASQSHVLLVKGANSSGMSKIVAALKEKF 452 >gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 462 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 229/473 (48%), Gaps = 37/473 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G + S V V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNM 296 +Y G K DF +E ++ QGK+ + G G H N Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT---AYKGFSVNVPGKHNVLNS 293 Query: 297 LMTLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 L + ++ I D+ T IK L + R +G FT+I++ YNA+P SM Sbjct: 294 LTAIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSM 346 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 KAAI V+ I R IA+LG M E+G H +++E I ++ G A Sbjct: 347 KAAIDVMKNIKGK---RAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEA 403 Query: 414 LKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 404 YREGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 216/445 (48%), Gaps = 23/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR I + F KG + DGH + A+ GAG D + + PV Sbjct: 26 IKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLT-APTNGPVV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L AL +LA A T+IA+TGS GKTTTK+ML LS + G+YNN Sbjct: 85 FVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDMLENVLSGKFRVQKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI L+++ +P AVIT I +H+ + E I Sbjct: 145 IGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ LLK L S G S D QC Sbjct: 205 AKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSAHQVSVGLSAKNDM------QC 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S +E + + V + I G H +N + + + I+ + + L+ Sbjct: 256 QMVSHLEEGITFTVNDDVTYTISILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLT 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R +++ A N +I+++YNA+P SMKAAI LS H +G I VLGD+ E+GE Sbjct: 316 DMRMQKF-MAPNGAM--VINDAYNASPTSMKAAIDTLS----HMKGETILVLGDVLELGE 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441 S+ H + L I ++ G +A+ + ++ +H+ + D L ++ S + Sbjct: 369 QSRQLHESVGSYLENKGIHQLYTFGEGAMAIHEKGKAYVNEAIHFDQK-DKLMRYLTSIV 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466 VV+VK+S ++ L+E Sbjct: 428 EQHSVVLVKASRGMHLEEVVEALVE 452 >gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 468 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 21 QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 81 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 138 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 139 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 198 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 199 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 256 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I + Sbjct: 257 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 315 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 316 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 370 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G FH ++ +++ I+HV+ G + + P V Sbjct: 371 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 429 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 430 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 467 >gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 455 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 216/454 (47%), Gaps = 19/454 (4%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ L+ + Sbjct: 74 --PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNA 256 F ++IA AK EI + L++ G N D+ E AK IK S FG + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAK-----IKQDKSTFGFREED 246 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 ++ + EV + ++ IG H N L + + + + +A Sbjct: 247 TVFATTFRSYMHHATFEVNDSEQQFKIPM--IGKHNVSNALAAISVGRHFGENYEQIAQA 304 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ F P R + + + + ++D+ YN+NP ++KA + Q+ GRRIAVLG Sbjct: 305 LANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVKDGGRRIAVLG 361 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMD 431 DM E+G+ S H LA L I+ ++L G + L DAL ++H + + M+ Sbjct: 362 DMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAANLHYYPQDEMN 421 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +++ + D+V++K S+ ++++ L+ Sbjct: 422 HMIDDLKNDIKPDDIVMLKGSHGMHLEKVLDRLM 455 >gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 457 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 215/467 (46%), Gaps = 49/467 (10%) Query: 20 GIVPQGFVNG-----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ P+GF + ++ DSR + P F A G +DGHDF A+++GA VV+N Sbjct: 12 GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNH-- 69 Query: 75 VASIGSLSIPVFGVD--------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 PV GV D A+ + R + ++ +TGSVGKTTTK+M Sbjct: 70 ---------PVEGVPAERAVISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMT 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 A++ T G+ NN +G+P T+ R+ D ++ + E+GMSH GEI L RP + Sbjct: 121 YAAIAGFGNTIKTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT I +H+ N E I AK EI GL + + LN DD F +H ++ Sbjct: 181 GIITCIGVSHIGNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAALPTH---VRP 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIV 303 ++ +NAD +Q E M L K+ EV +G H N L Sbjct: 238 VWFSLGDENADVCALDVRQ--EGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAA 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + L + I L+ F E G R + ++ G +I++ YNANP SMKAA+++ + Sbjct: 296 TRLGLAPEGVIAGLADF---EQTGMRQKI-VHAGSMDVIEDCYNANPDSMKAALAMFKEY 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDA-L 418 RR A+LGDM E+G +S H +L + ++ + G A KDA L Sbjct: 352 PCK---RRFALLGDMLELGGMSAPAHEELGRQAAEAGLTALVTYGPEAARTARAAKDAGL 408 Query: 419 PRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +H Y + D L + + GD ++VK+S + + L Sbjct: 409 ADVVHAEDYRQAADALL----ARMAPGDALLVKASRGMALEKALALF 451 >gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 7 QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 67 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 125 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 184 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 185 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 242 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I + Sbjct: 243 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 301 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 302 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 356 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G FH ++ +++ I+HV+ G + + P V Sbjct: 357 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 415 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 416 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 453 >gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] Length = 452 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL K G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPKNGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] Length = 458 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSIL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I + Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIATHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFTK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G FH ++ +++ I+HV+ G + + P V Sbjct: 361 KIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITML 457 >gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] Length = 457 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 193/385 (50%), Gaps = 23/385 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ IDSR + + I+G + +GH F+ A+ GA V+ + + V V Sbjct: 28 GVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVL--WERREPNPPKEVTVILV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D AL LA A R + +I ITGS GKT+TK+++ ++ T +G++NN IG Sbjct: 86 EDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYITQKTMGNFNNEIG 145 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL +V+ G+ E+GM +LGE+ FLT+LVRP IA+IT + AHL N +E IA Sbjct: 146 VPLTLLSFSQNVEVGVVEMGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIAR 205 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI EGL G + N D + L+A + GI + SFG + D+ + + C Sbjct: 206 AKVEIAEGLRDGGMLIYNGDQPLLKDALRAAQLSGGI-ALRSFGTQQGNDYIVHEV--CQ 262 Query: 268 EQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ + + +V H IG H A N L +AL F E Sbjct: 263 QKEGLSFYIN----DVACHLDMIGKHQAMNATAAWIAAKALQV---CEAEALKGFESIEK 315 Query: 326 RGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 G R + +Q ++++SY +NP S AA+ L + P+ ++AVLGDM E+GE Sbjct: 316 TGLRNELVSFDQAL--ILNDSYKSNPQSALAALDTLEEFDIPY----KLAVLGDMLELGE 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S H L + L Y++ V G Sbjct: 370 TSDQIHYQLGKDLKNYHLQEVLTIG 394 >gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] Length = 448 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 135/393 (34%), Positives = 196/393 (49%), Gaps = 25/393 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G SIDSR++ E F AI+G ++DG ++I A++KG+ ++ +S S V Sbjct: 30 GFSIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGSSWIIT-----SSKNHKSNRCIYV 84 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNN 145 + L K+A IIAITGS GKTTTKEM+ L + G+ NN Sbjct: 85 KNTKETLCKIASYLVGEVSPKIIAITGSNGKTTTKEMVANILYQHYPKNEILVTKGNLNN 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL + + + E+GM+H EI L + P IAVIT I AHL NFS Sbjct: 145 DIGLPLTLFNLKKNHTIVVLEMGMNHQDEITKLCKIAPPDIAVITNIGEAHLENFSSKNG 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI G +K G L DD +F L KS L ++ I SFG +KN++ +L Sbjct: 205 IAKAKKEILLGAKKNGIAILPRDDVYFNYL--KSDCLYLRCI-SFGINKNSNIRL----- 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S + + + + + +G NM + + + L +T IK + EG Sbjct: 257 --DLSSKVLTVDEEKINIESSLLGKENLMNMAAAVSVANALELPTETIIKGMKTIDSIEG 314 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A N +ID++YN+NP+SM AI VL Q + ++I ++GDM E+G LS Sbjct: 315 RLEVKITASN---IKIIDDTYNSNPSSMMMAIDVLDQF----KQKKILIVGDMAELGPLS 367 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +H D+ + NI V G L D L Sbjct: 368 KKYHTDIGHYILEKNIDLVMGIGNMTKYLIDVL 400 >gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 453 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 30/412 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + HD++ ++ GI P + ++ DSR+I F A+ G +D H F +AV G Sbjct: 4 FMLHDIITILRAKVYGINP--MIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVLAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++VN + L+IP V+D L AL +L+ R + A +IA+TGS GKT+ KE Sbjct: 62 ASAILVNRQL-----PLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L K A G+ NN IGV LTL R+ DF I ELG +H+GEI +LV P Sbjct: 117 MTASILRQCGKVLATQGNLNNDIGVSLTLLRLTPQDDFAIIELGANHIGEISSNANLVLP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA++ I+ +HL+ F + +A AK EIF L G + LN + + + + S Sbjct: 177 EIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVILNENSNDWLNWQQGSKC--- 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLG 301 KT++ F +K + Q K S M L QG S +V +G H N L Sbjct: 234 KTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQG-SCQVQLPMLGKHNITNALAASA 292 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A++ LS P GR + + + LID+SYNAN SM AA VLS Sbjct: 293 LAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVGK---LLIDDSYNANVNSMIAAAQVLS 349 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHV 404 ++ G + V+GDM E+GE +H + + +VLS+ N+S++ Sbjct: 350 EM----PGYLVMVVGDMAELGEKEIKYHQQVGKFIAMVGINKVLSIGNLSYI 397 >gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri ATCC 33323] gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri ATCC 33323] gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] Length = 455 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 216/454 (47%), Gaps = 19/454 (4%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+ + + + DSR P F + G DGHDF+ +A+ GA + Sbjct: 15 SVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V+D L AL LA + T++ ITGS GKTTTK+M+ L+ + Sbjct: 74 --PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVH 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + VIT I AH+ Sbjct: 132 KTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHI 191 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNA 256 F ++IA AK EI + L++ G N D+ E AK IK S FG + Sbjct: 192 EFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEERAAK-----IKQDKSTFGFREED 246 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 ++ + E+ + ++ IG H N L + + + + +A Sbjct: 247 TVFATTFRSYMHHATFEINDSEQQFKIPM--IGKHNVSNALAAISVGRHFGENDEQIAQA 304 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ F P R + + + + ++D+ YN+NP ++KA + Q+ GRRIAVLG Sbjct: 305 LANFTPTANRMQWKKGDVGEA---IMDDVYNSNPTAVKAVTTSFGQVMVQDGGRRIAVLG 361 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMD 431 DM E+G+ S H LA L I+ ++L G + L DAL ++H + + M+ Sbjct: 362 DMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAANLHYYPQDEMN 421 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +++ + D+V++K S+ ++++ L+ Sbjct: 422 HMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] Length = 464 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/391 (32%), Positives = 202/391 (51%), Gaps = 34/391 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ DSR+ FFA++G +D H F+ Q+GA ++VV + ++S+P Sbjct: 27 VDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAKILVVEH----ADPAVSVPQL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V + AL +LA+ R + + A+TGS GKTT KEM L K + G+ Sbjct: 83 VVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVKEMTAAILQQTAKNADEVLFTAGN 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H GEI + T L RP +A++ +APAHL+ F Sbjct: 143 FNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAYTTQLARPDVALVNNVAPAHLAGFGS 202 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 ++ +A AK EI++GL + G +N D ++ + + IK +S S+ AD R Sbjct: 203 LQGVAKAKGEIYQGLTENGIAVINQDCNYLPMWQQNIAQHPIKR-FSLTHSE-ADIYARA 260 Query: 263 WKQ---------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + C+ Q +E++L +G H N L + L A +D Sbjct: 261 IQHTNIGFSFVLCTPQGEIEIEL---------PYLGLHNVSNALAAASLAIALGATLDDV 311 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 K L++ K +G+ + +N TL+D++YNAN S+KAAISVL +P + ++ Sbjct: 312 KKGLAL--GKRVKGRLFPIEVNSQ-LTLLDDTYNANVDSLKAAISVLYS-AP--QQVKVL 365 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 V+GDM E+GE ++ H +AE N+ V Sbjct: 366 VVGDMAELGESTEQCHRQVAEAALNANLDQV 396 >gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 462 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 133/453 (29%), Positives = 223/453 (49%), Gaps = 29/453 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G++ DSR + + F + G + DGH +I A++ GA + +D + Sbjct: 22 PDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGAVATLWASDHADDVPE-D 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYAC 139 +PV V D L AL +L + ++A+TGS GKTTTK+M+ L + + KT+A Sbjct: 80 LPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVLGTQFNVTKTHA- 138 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P +AVIT I AH+ Sbjct: 139 --NFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEF 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + IA AK EI GL++ GT N D+ + +AK + +T FG Sbjct: 197 FGTRDRIADAKMEIVHGLKEDGTFIFNGDEPLLQ-ERAKEVSQHQRT---FGLDDTNTLA 252 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q+ + L + + +G + N L L + A +A++ Sbjct: 253 GSDITTSRAQTQFKTSLWPDNTYTIPM-MGAYNVNNALAALLVADTFHIRPAAAQQAIAS 311 Query: 320 FHPKEGRGK---RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F P E R + YR ++ + YN+NP + + ++ + + +G+RIAVLG Sbjct: 312 FVPTENRTEWLTGYRGE------AILSDVYNSNPTAARRVLAAFAAVP--TKGQRIAVLG 363 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMD 431 DM E+G+ S + H+ LA L I+ V+L+G H+ AL + L ++H + ++ Sbjct: 364 DMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQP 423 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L + +++ D V++K S+ +++ L Sbjct: 424 QLIADLTATVSADDQVLLKGSHGIHLEKVLTAL 456 >gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] Length = 452 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 139/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] Length = 452 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 141/448 (31%), Positives = 217/448 (48%), Gaps = 26/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N +S D+R+I P F A+ G +D HDF L+AV+ GA ++V+ + P Sbjct: 24 INAVSTDTRTIEPGALFVALVGERFDAHDFALNAVEAGATALLVSRAL-----DTQTPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L + +AITGS GKTT KEM+ + + + G++NN Sbjct: 79 LVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + DF + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQLVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRK--W 263 AK EI++GL +N D + E + L K + +F AD+ K Sbjct: 199 KQAKGEIYQGLAPGSAAIVNLDSNGGEHWQ---EVLADKQVKTFSVLDSTADYFAHKITM 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E S+ + G EV IG H N L + L A ++ L H Sbjct: 256 NNSGEASFELLSPMG-GFEVKLGIIGQHNVANALAATALAFELGASIEMVQSGLR--HLA 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ AL + TLID+SYNA+ +MKAA +LS +G R +LG+M E+G+ Sbjct: 313 KVKGRVESIALTEK-ITLIDDSYNASVPAMKAAADLLSSF----KGVRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + HV G A A+ + + +T D + FI+ L Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTYG----ADARAISQQCQGTHFDTHDAMIEFIKQQLPL 423 Query: 444 GD---VVVVKSSNSCGFYRLINLLLEEF 468 D ++VK +NS G ++ L E + Sbjct: 424 HDCAQTLLVKGANSAGMSKIAAALKEMY 451 >gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] Length = 489 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 145/409 (35%), Positives = 196/409 (47%), Gaps = 26/409 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+ G + VP IS DSR I P F AI G DGHDF+ Sbjct: 1 MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112 +GA +V+ + I +P V++ LGAL K + R L S T+I Sbjct: 60 PKVGAQGAVAALVDHE----IAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK++L LS + T A +GS+NN IG+PLT ++ F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSE---QSWMEVQLQGKSMEVVHH 286 + A + A + FG + D QL +C + S++ G+ V Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + L +D LS V R + FTLID+S Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351 Query: 346 YNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDL 392 +NANP SMKA + LS+ E + RIAVLG M E+G H D+ Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDV 400 >gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus pseudintermedius ED99] Length = 454 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 216/445 (48%), Gaps = 23/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR I + F KG + DGH + A+ GAG D + + PV Sbjct: 26 IKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLT-APTNGPVV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L AL +LA A T+IA+TGS GKTTTK+ML LS + G+YNN Sbjct: 85 FVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDMLENVLSGKFRVQKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + I E+GMS EI L+++ +P AVIT I +H+ + E I Sbjct: 145 IGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ LLK L S G S D QC Sbjct: 205 AKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSAHQVSVGLSAKNDM------QC 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S +E + + V + I G H +N + + + I+ + + L+ Sbjct: 256 QMVSHLEEGITFTVNDDVTYTIPILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLT 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R +++ A N +I+++YNA+P SMKAAI LS H +G I VLGD+ E+GE Sbjct: 316 DMRMQKF-MAPNGAM--VINDAYNASPTSMKAAIDTLS----HMKGETILVLGDVLELGE 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441 S+ H + L I ++ G +A+ + ++ +H+ + D L ++ S + Sbjct: 369 QSRQLHESVGAYLENKGIHQLYTFGEGAMAIHEKGKAYVNEAIHFDQK-DKLMRYLTSIV 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466 VV+VK+S ++ L+E Sbjct: 428 EQHSVVLVKASRGMHLEEVVEALVE 452 >gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] Length = 455 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/445 (28%), Positives = 218/445 (48%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + F +KG DGHDFI A+ GA + G+ P+ Sbjct: 24 ISSVAFDSRKLNENSLFVPLKG-ERDGHDFINSAIANGAVATLWEKGHPNKPGNF--PLI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ +LA + ++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 EVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + E+GM G++ L+ LV+P + VIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L++ G N D+ LL+ ++ + + +FG S ++K Sbjct: 201 ADAKMEITDFLKEDGEFIYNGDEP---LLRQRAEKI-TQVKSTFGFSDQDTIHALEFKSY 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + IG H N + + + D +LS F P R Sbjct: 257 MHHASFVTNSSEQKFSIPM--IGKHNVSNAMAAICVGHHFGESDDEIAASLSDFTPTANR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385 + + + + ++D+ YN+NP + KA ++ Q+ P G GRRIAVLGDM E+G S Sbjct: 315 MQWRKGDVGE---DIMDDIYNSNPTAAKAVLTSFGQVEVPEG-GRRIAVLGDMLELGAAS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440 H LA+ L I+ V+L G + L++A+ P ++H + + M+ + +++ Sbjct: 371 AELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVPDTLHYYPQDKMERMIDDLKND 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + D+V++K+S+ +++ LL Sbjct: 431 IHSNDIVMLKASHGMHLDKVLERLL 455 >gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia fergusonii B253] Length = 452 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] Length = 458 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 228/464 (49%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT + AHL + E IA AK EI GL++ G N D+ LL + + + Sbjct: 183 NAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 ATETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 356 D--GFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFP 413 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 414 GERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITML 457 >gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 458 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 130/443 (29%), Positives = 219/443 (49%), Gaps = 17/443 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+R I + I+G +DGH F+ AV+ GA + D+ +L PV Sbjct: 27 IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLWMKDVANPPENL--PVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL LA R + +I +TGS GKT+TK+++T L++ K G++NNH Sbjct: 85 FVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT I AHL + E I Sbjct: 145 IGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQ 265 A AK EI GL++ G N D+ LL + + I +FG ++ D+ Sbjct: 205 AEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNLIAETVTFGDARANDYYPTTVTL 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + ++ + +++ +G H N L ++ I + + L Sbjct: 262 QATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMT-- 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 319 -GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQE 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSL 441 FH ++ +++ IS+V+ G + + P V + + L +Q+ + Sbjct: 376 VQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNE-RVKAYDNKEELVKELQAVV 434 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 DVV+VK+S +I +L Sbjct: 435 DAKDVVLVKASRGMKLEEVITML 457 >gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LF82] gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] Length = 452 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli M863] gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli STEC_7v] Length = 452 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] Length = 457 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 130/392 (33%), Positives = 187/392 (47%), Gaps = 31/392 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SIDSR I F KG + DGH F+ A++KGA D+ L +P+ Sbjct: 27 IQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDAIEKGAAAAFWQKDVPNP--PLHLPIL 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + R K + ITGS GKTTTK+M LS K G+YNNH Sbjct: 85 IVEDTLTALQELARSYRDELKIKVAGITGSNGKTTTKDMTANLLSLQYKVQKTEGNYNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + D + + E+GMS GEI FLT L RP +IT I +HL + E I Sbjct: 145 IGLPLTILALEEDTEIAVLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 A AK EI GL++ G + D+ E LK+ + + ++T FG++ D KQ Sbjct: 205 AEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSYNGSAALRT---FGRTGKNDVYPMDIKQ 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 S GI + L LG ++L A A V + K Sbjct: 262 NDSGSTF--------------GINVSSGKFYLPVLGTHNVLNALAAMIAAAHFGVPYEKM 307 Query: 325 GRG--------KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 G R Q +I+++YNA+P SM AAI +++ + G ++I VLG Sbjct: 308 NEGFASLKLTNMRMELLEGQSGEKIINDAYNASPTSMNAAIELIANLP--GYKKKILVLG 365 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 DM E+G + FH + + + +V+ G Sbjct: 366 DMLELGPQEEDFHYSTGKSVDPEKVDYVFTFG 397 >gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] Length = 536 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 139/396 (35%), Positives = 195/396 (49%), Gaps = 36/396 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82 N + DSR I F AI G H DGHD++ +A + GA + +V T++ + + S Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVEGTNLNQIVVNNS 115 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 I G L A + L + L TII ITGSVGKTTTK+ML LS++ +T A +GS Sbjct: 116 IEALG----LLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVAPVGS 171 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN+IG+PLT ++ + F I E+G +H+GEI LTH+ P +A++ + AHL F Sbjct: 172 FNNNIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGS 231 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNA----- 256 +E IA AK+EI GL G LN DD + + A S + K + FG++ KN Sbjct: 232 VERIAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNVKNGLLESA 288 Query: 257 ---DFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVS 304 D+QL K + + + S + H + G H N L + Sbjct: 289 SKDDYQLSASNIKLDSFGKAVFTTTERSNSSNLMNHIEVHLAIQGEHNVMNALAAANVAR 348 Query: 305 ILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--- 360 L +D LS V H R + + N FTLID+S+NANP SMKA I L Sbjct: 349 YLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAY 408 Query: 361 --SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 S + RIAVLG M E+G H ++ E Sbjct: 409 ENDSCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444 >gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Leadbetterella byssophila DSM 17132] gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leadbetterella byssophila DSM 17132] Length = 433 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/430 (31%), Positives = 208/430 (48%), Gaps = 23/430 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI+ D+R+I FFA+KG ++G+ F A+Q GA VV+ AS+ ++ Sbjct: 15 GITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDD---ASLKGKERMIY-C 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +DVL L LA R + +IA+TGS GKTT KE+LT L K +A G+ NNHIG Sbjct: 71 EDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL MP D I E+G +H EI L + P IT + AHL F G E I Sbjct: 131 VPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFITNLGKAHLEGFGGEEGIRK 190 Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+F+ L+++G I F+N +D ++A + I I +G ++A K+ S Sbjct: 191 GKGELFDFLKQSGGIVFVNANDP---KVRALAEERNILPIVYYGDDEDALL----IKEES 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + GK+ G + NM I D A +A++ ++P R Sbjct: 244 PVVVFESPVSGKTYTTFIG--GKYNFDNMQTAHAIGRYFDVSEDKACEAIAHYNPDNNRS 301 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N I ++YNANP+SM+A++ + + ++ VLGDM E+G+ S++ Sbjct: 302 QHVMVGTNH----FIMDAYNANPSSMEASLKSFGALKT--DSPKVVVLGDMYELGDYSEA 355 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + ++LS V L G ++ A LP++ + +M L + + Sbjct: 356 EHAAIGKLLSELKFDDVVLFGENMKAALAFLPKAYYFTDKFSMHNWLL---DRKYENTYI 412 Query: 448 VVKSSNSCGF 457 +VK S S G Sbjct: 413 LVKGSRSTGL 422 >gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli CFT073] gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli CFT073] gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ABU 83972] gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 153-1] Length = 452 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGCHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185] gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185] Length = 452 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRQAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] Length = 462 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 31/470 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G +S V V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMT 299 +Y G K DF +E ++ QGK+ + G H N L Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTA 296 Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ I D+ T IK L + R +G FT+I++ YNA+P SMKAA Sbjct: 297 IACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAA 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I V+ I R IA+LG M E+G H +++E I ++ G A ++ Sbjct: 350 IDVMKNIKGK---RTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGEFSEAYRE 406 Query: 417 ALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 407 GFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] Length = 453 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 147/452 (32%), Positives = 215/452 (47%), Gaps = 41/452 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR+ P + F A+KG H+D HDF+ + +GA +V D + + Sbjct: 22 VTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVRQDFALP----GVALV 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD AL +LA R R + ++ ITGS GKTT KEMLT L++ A G++ Sbjct: 78 QVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLTAILAAHAGRDTVLATAGNF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202 NN IG+PLTL + + + E+GM+H GEIR+LT L RP +A++ AHL FSG Sbjct: 138 NNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTGLARPRVALVNNALRAHLGGGFSG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +IA AK+EIFEGL + G +N DD + +A + + + SFG + AD R Sbjct: 198 TADIARAKSEIFEGLAEDGVAVINADDPHAAIFRAAAA---GRRLLSFGLGE-ADVNARD 253 Query: 263 ---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + CS Q + V L G H +N L L + Sbjct: 254 VTLSDTAAHFVLCSPQGDVAVALPAP---------GEHNVRNALAAAAAALALEVPLAAI 304 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRI 372 L+ F GR +R TLID++YNANP SMKA I VL Q ++P R Sbjct: 305 AAGLAGFAGVRGRLQRKHAGNGA---TLIDDTYNANPDSMKAGIDVLLQALAP-----RW 356 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 V+GD+ E+GE + + H ++ + + G L+ A ++ +T+D Sbjct: 357 FVMGDIGELGENAAALHAEVGAYARERGLDALLTLGD--LSRHAAAAFGATANHFDTLDA 414 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ S L V+VK S R++ L Sbjct: 415 LLSYLDSHLPADATVLVKGSRFMRMERVVEHL 446 >gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK966] gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. EDL933] gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. TW14359] gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1044] Length = 452 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H++E L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFAEKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 489 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 145/409 (35%), Positives = 196/409 (47%), Gaps = 26/409 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+ G + VP IS DSR I P F AI G DGHDF+ Sbjct: 1 MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGSVFVAIAGERVDGHDFV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112 +GA +V+ + I +P V++ LGAL K + R L S T+I Sbjct: 60 PKVGAQGAVAALVDHE----IAGAQVPQIVVENTVKALGALAKHNIERRRALESPFTVIG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK++L LS + T A +GS+NN IG+PLT ++ F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEHV 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSE---QSWMEVQLQGKSMEVVHH 286 + A + A + FG + D QL +C + S++ G+ V Sbjct: 236 AAMSAIAPA----DVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLG 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + L +D LS V R + FTLID+S Sbjct: 292 ICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDS 351 Query: 346 YNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDL 392 +NANP SMKA + LS+ E + RIAVLG M E+G H D+ Sbjct: 352 FNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDV 400 >gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 488 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 215/459 (46%), Gaps = 31/459 (6%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 GI P V DSR + A G + DGHDF+ A GA L +V +++ G Sbjct: 22 GITPLSVVT----DSREATQGSLYVAKPGENADGHDFVGSAFAAGATLALVEHPVLSPDG 77 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIAL 130 + P V D + A+ KLA + R +A T+I ITGS GKTTTK++L L Sbjct: 78 T-PYPSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVIGITGSAGKTTTKDLLAGIL 136 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S+ T A GSYN IGVPLT+ D + + E+G + +G I +L +V+P I V+ Sbjct: 137 SAHGTTVAPKGSYNGEIGVPLTVFTAGTDTRYLVIEMGATGIGHISYLVDMVKPDIGVVL 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH F G+E IA AK E+ EGL +GT +N DD ++A++ A + + Sbjct: 197 AVGTAHAGEFGGVENIAQAKGELVEGLAASGTAIINLDDERVAAMQARTSA-SVLGFTAE 255 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306 G+ A L ++ L G + HH IG H N+L Sbjct: 256 GRPGAAVQALNADTNAEGNPEFDLLLPGG--DTPHHVSSRLIGAHHTGNLLAAAAAAWAA 313 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + I A R + R G T+I+++YNANP SM+AA+ L+ + Sbjct: 314 GVSGED-IAAALSSQAAASRWRMERTERADG-VTIINDAYNANPESMRAALRTLADL--- 368 Query: 367 GEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421 G+GRR AVLG M E+GE S H + + NIS + + G AL + + Sbjct: 369 GQGRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREARALYVSAVQEGSWG 428 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 ++E + + + + L GD+V+ KSSNS G L Sbjct: 429 DECIFAEDAEEAYELLSAELEPGDLVLFKSSNSVGLRHL 467 >gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus cereus Q1] gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus Q1] gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 226/465 (48%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LP 419 G ++I VLGDM E+G+ FH ++ +++ IS+V+ G + + P Sbjct: 356 D--GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + DVV++K+S +I +L Sbjct: 414 NE-RVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVITML 457 >gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] Length = 458 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 130/401 (32%), Positives = 189/401 (47%), Gaps = 19/401 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L AI IG G V ++ D+R + P F A++G +DGHDF A++ GA Sbjct: 5 TLQTLADAIGATLIG--ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALEGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++VN + +L +P V D AL +L R + A ++A+TGS GKT+ KEM Sbjct: 63 GALLVNRRL-----ALDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G+ NN IGVPLTL R+ DF + ELG +H+GEI + L RPH Sbjct: 118 SAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL GT +N D + +E + HAL + Sbjct: 178 SALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIVNVDSNDWE---SWQHALTEQ 234 Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ F A DF + + + + V+ G H N L + Sbjct: 235 RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAAALT 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A + + L+ GR R Q L+D+SYNAN SM AA VL + Sbjct: 295 MSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGNM 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 G R+ V+GDM E+G +++ H + + I V Sbjct: 352 P----GYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKV 388 >gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis] Length = 446 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 177/366 (48%), Gaps = 30/366 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 +DSR P F A G H DGHD+ A + GA VA +GS S+P V+ Sbjct: 30 LDSRQAEPGGLFVAFAGEHADGHDYAERAGRAGA---------VAVLGSRPTSLPTVVVE 80 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 DV AL LA V ARLR T++ +TGS GKT TK++L LS T A GS NN + Sbjct: 81 DVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSGAGPTVATTGSLNNEL 140 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F + E+G H G+I LT LV P IAV+ + AHL F IA Sbjct: 141 GVPLTMLRAQAATRFLVLEMGARHEGDIAELTGLVAPDIAVVLNVGVAHLGEFGSRAAIA 200 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 AK E+ +GL GT LN DD A L + +FG++ AD Q+ + Sbjct: 201 RAKGELVQGLVPGGTAVLNADDPRV----ASMSVLTDGPVLTFGRTDPADVQVLDVVLDR 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV--FHPK 323 S ++ S + +G H A N +D A AL+ P Sbjct: 257 LGRPSCT-LRTVDTSARLALPLVGAHQALNASAAAAAALAAGVPLDLATTALTTASLSPW 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + C TL+++SYNANP S +AA+ LS I GRRIAVLG+M E+G+ Sbjct: 316 RMELRDLACG-----ATLLNDSYNANPDSTRAALDALSAIE---GGRRIAVLGEMLELGD 367 Query: 384 LSQSFH 389 S++ H Sbjct: 368 GSEAEH 373 >gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coprococcus catus GD/7] Length = 456 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 216/455 (47%), Gaps = 38/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q G+ IDSR I P F A KG DGH FI KGA V+ +G Sbjct: 26 QETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIPDVFAKGALAVICEVLPEEDLG---- 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V+D AL + A R + ++ ITGSVGKT+TKE + L K + G+Y Sbjct: 82 PCILVEDSFMALKQAAAFYRQQLNIRVVGITGSVGKTSTKEFIAAVLVEKYKVHKTAGNY 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+PLT+ + D + E+G++ GE+ L+ + RP I V+T I HL N Sbjct: 142 NNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEVARPDICVMTNIGQCHLENLIDR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + I AK+EIF+ + GT+ +N DD A H + K +FG +K+ W Sbjct: 202 DGILRAKSEIFDFMNPEGTVIVNGDDDKL----ATIHDVYGKAPITFGMNKDNAI----W 253 Query: 264 KQCSEQSWMEVQLQGKSMEV------VHHGI---GYHMAQNML--MTLGIVSILTADVDT 312 E L G ++ VH I G HM N + +G+ +T + T Sbjct: 254 ADHIENRG----LLGSRADIHMGDVLVHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEIT 309 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 A + H + G+ + + G +ID+ YNANP SMKAAI +L+ +P GR++ Sbjct: 310 A----GISHVEAVAGRSH--LIEAGDKVVIDDCYNANPVSMKAAIDLLA-TAP---GRKV 359 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPRSIHVHYSETMD 431 A+LGDM E+GE ++ H ++ + + I + + G + A + + E + Sbjct: 360 AILGDMFELGENERAMHREVGQYAAEKGIDLILCVGGLSSEMYEGAAEKGGEARHFEIRE 419 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L +Q L GD V+VK+S+S F ++ + E Sbjct: 420 ALEAVLQDLLQPGDTVLVKASHSMAFENIVQNIQE 454 >gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] Length = 536 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 139/396 (35%), Positives = 195/396 (49%), Gaps = 36/396 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82 N + DSR I F AI G H DGHD++ +A + GA + +V T++ + + S Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVEGTNLNQIVVNNS 115 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 I G L A + L + L TII ITGSVGKTTTK+ML LS++ +T A +GS Sbjct: 116 IEALG----LLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVAPVGS 171 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN+IG+PLT ++ + F I E+G +H+GEI LTH+ P +A++ + AHL F Sbjct: 172 FNNNIGLPLTALQVGSNTRFLIAEMGANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGS 231 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNA----- 256 +E IA AK+EI GL G LN DD + + A S + K + FG++ KN Sbjct: 232 VERIAQAKSEIVRGLLPHGIAVLNSDD---KRVSAMSCLVENKHVRWFGRNVKNGLLESA 288 Query: 257 ---DFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVS 304 D+QL K + + + S + H + G H N L + Sbjct: 289 SKDDYQLSASNIKLDSFGKAVFTTTERSNSSDLMNHIEVHLAIQGEHNVMNALAAANVAR 348 Query: 305 ILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--- 360 L +D LS V H R + + N FTLID+S+NANP SMKA I L Sbjct: 349 YLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDEKFTLIDDSFNANPDSMKAGIDGLCAY 408 Query: 361 --SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 S + RIAVLG M E+G H ++ E Sbjct: 409 ENDSCSASSKPFRIAVLGSMLELGSNEDELHTNIGE 444 >gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354] gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354] Length = 452 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] Length = 423 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 30/438 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I+ DSR I P FFA+KG +++G+ + A++KGA +V+ + S V Sbjct: 14 NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVT----SEQTILV 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L +L KLA R + II++TGS GKTTTKE++ LS T A G+ NNHIG Sbjct: 70 NDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLNNHIG 129 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M D + GI E+G +H EI FL+ + P IT AHL F GIE + Sbjct: 130 VPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGYITNFGKAHLEGFGGIEGVII 189 Query: 209 AKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L+ + IF+N DD+ K T Y FG S D + + + Sbjct: 190 GKSELYDYLKASDKFIFVNGDDT-----KQVERTQDANT-YVFGGSDTYDLSI---EFLT 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + GK ++ IG + N+ + I + + D +A+ + P R Sbjct: 241 ANPMVSCAVDGKKIQ--SQLIGSYNFSNIAAAIAIGTYFKVNSDDIKEAIEAYIPSNNRS 298 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N+ +I ++YNANP SMKAA+ S ++ + +IA LGDM E+G+ ++ Sbjct: 299 QILTKNTNK----IILDAYNANPTSMKAALDNFSDLT---DTSKIAFLGDMFELGDSAKE 351 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDV 446 H + + + I ++L G + + ++ I +H + E++ F +++S Sbjct: 352 EHQFINDYAASLEIEKIYLIGEN-FGITNSTNEKIVIHSTFESLKENFPALENS-----T 405 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S R++ LL Sbjct: 406 LLIKGSRGMALERILELL 423 >gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] Length = 458 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 214/449 (47%), Gaps = 33/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+RS+ P + F A++G H+DGH +I A++KGA VVV+T +++P + V Sbjct: 24 VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDTVQA----EIAVPQWVVK 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + AL +A R + ++ +TGS GKT+ K ML T A G+ NNHIGV Sbjct: 80 DTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCRQAGPTVATAGNLNNHIGV 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ F I E G S GEI +LT L++P +A++ + PAH++ F ++ IA Sbjct: 140 PQTLMRLEQQA-FAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAIAQE 198 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----KNADFQLRKWK 264 K +I+ G + +N DD++ + A++ GI TI F S KN+ + Sbjct: 199 KGDIYGGSNLRCAV-INLDDNYAQEFLARNG--GITTI-GFTASPIQYEKNSGVDTLIYG 254 Query: 265 QCSEQSWM-----EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +C M ++ L+G V G H N L L + K +S Sbjct: 255 ECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQ 314 Query: 320 FHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F GR +R +C TLI+++YNANP SM+AA + L+ + V+GD Sbjct: 315 FQGVAGRMQRVSTKCC-----HTLINDTYNANPGSMRAAANYLAHAK-----HSVMVVGD 364 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G + H DL I +++ G L+ + + E L + Sbjct: 365 MGELGSDELAQHFDLGRYAKSQKIKNLFAVG--ELSKQTVAGFGEGATWFEDKVALASAL 422 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Q + VV+VK S S +I LL++ Sbjct: 423 QQQDLSDAVVLVKGSRSAKMEEVIELLVK 451 >gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 456 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 218/455 (47%), Gaps = 33/455 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + GI DSR IA F A++G +DGH F+ A GA ++V + S Sbjct: 28 PNLPITGICTDSRQIAAGNLFVALRGETFDGHQFVDQAAAAGAIALMVEAPL-----SSD 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P V + L A +L R + A +IA+TGSVGKTTTKEM+ LS + Sbjct: 83 LPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGKTTTKEMIAAVLSHYGAVLKTEAN 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVP TL ++ F + E+GM GEI L+ + +P +AVIT + AH+ Sbjct: 143 FNNEIGVPKTLLQLEPHHQFAVIEMGMRARGEIALLSQIAQPDVAVITNVGTAHIGRLGS 202 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AK E+ + GT LN D LL + +TI ++G LR Sbjct: 203 REAIAQAKCELLAEMPPGGTAVLNADSPL--LLPTVAQVWSGRTI-TYGLEGGT---LRG 256 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 Q + + + G++ V G H A N L LG++ L + D L++ P Sbjct: 257 IYQPPQ----TLHVGGRTYTVPL--AGAHHALNFLAALGVLQALDVESDRLPVQLTLELP 310 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GRG RYR + L+DE+YNA SM AA+ +L + R +AVLG M E+G Sbjct: 311 S-GRGGRYRLEPD---ILLLDETYNAGLESMVAALHLLRSLPGQ---RHLAVLGPMRELG 363 Query: 383 ELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA---LPRSIHVHYSETMDGLFLFI 437 S SFH + ++ ++ +++ G AL +P + E ++ L + Sbjct: 364 AFSLSFHEQVGATVAQLDLDGLFILDQGEEGAALAQGAGQIPTQQFGSHEELVEYLLREL 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 Q+ GD ++ K+S++ R++N L + +P +Q Sbjct: 424 QA----GDRLLFKASHAVALDRVVNQLRQRWPKLQ 454 >gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ IS+V+ G + + P V Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ED1a] gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ED1a] Length = 452 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 218/441 (49%), Gaps = 17/441 (3%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+SID+R + + I+G +DGH F+ A++ GA + D+ ++ PV V Sbjct: 29 GVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESGAVATLWKRDVQNPPANM--PVIFV 86 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L AL LA R + ++ +TGS GKT+TK+++T L++ K G++NNHIG Sbjct: 87 EDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKDIVTSLLATKFKVQKTEGNFNNHIG 146 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PLT+ + D + + E+GMS GEI FL+ L RP+ A+IT I AHL + + IA Sbjct: 147 LPLTILNLEEDTEIAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAE 206 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI GL++ G N D+ + L ++TI +FG ++ D+ + Sbjct: 207 AKLEIVTGLQEGGVFVYNGDEPLL-TNRVPKMDLAVETI-TFGDARANDYY---PTSVTL 261 Query: 269 QSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 Q+ + V+ + +G H N L ++ I + + L Sbjct: 262 QATGTHFTMNRDENVLFYLPVLGKHNVYNALASMAIAKYFGVTWEEMKQGLVTLQMT--- 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 319 GMRMEVVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAKKIVVLGDMLELGDQEV 376 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS--SLVD- 443 FH ++ +++ IS+V+ G + + + + D +++ +VD Sbjct: 377 QFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVKNLKDIVDM 436 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 DVV+VK+S +I +L Sbjct: 437 EDVVLVKASRGMKMEEIITML 457 >gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] Length = 427 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 217/439 (49%), Gaps = 29/439 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI D+R I FFA+ G +++G+ F A++ GA VV++ + +I Sbjct: 15 GICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGETILT--- 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L KLA R I+A+TGS GKTTTKE++ LS T A G+ NNHIG Sbjct: 72 DNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M + + GI E+G +HL EI L H+ +P+ IT AHL F +E + Sbjct: 132 VPLTLLSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYITNFGKAHLEGFGSLEGVIK 191 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+++ + K+ G +F+N +D+ EL K + Y+FG N D +++ + Sbjct: 192 GKTELYKHIVKSDGLLFVNANDAKQLELTKKEKR-------YTFGNEGN-DCEIKLLEAT 243 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + QG+S+ + IG + N+ + I +A+ + P R Sbjct: 244 KE---LIISYQGQSIN--SNLIGLYNYHNIAAAIAIGQYFKVSATKVKEAIEEYIPTNNR 298 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + Q T+I ++YNANP+SM AA+ Q + +I +LGDM E+GE + Sbjct: 299 SQ----IIKQNGHTIILDAYNANPSSMTAALDNFKQTVGN---NKILILGDMFELGETAS 351 Query: 387 SFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H +A+ +S NI + V+L G + +K + H+H T + L ++ + Sbjct: 352 KEHQAIADKISSQNIGNTVYLVGENFSKIK---TDNKHMHLCPTFEALQSNLKHQKPNNA 408 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K S R + LL Sbjct: 409 TILIKGSRGMALERTLKLL 427 >gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3] gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3] Length = 1056 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 126/402 (31%), Positives = 201/402 (50%), Gaps = 12/402 (2%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 K AG + D+ + PV V D + A+ + AR R +++A+TGS GKTT Sbjct: 657 KPAGFMTTEPDLASGQQG---PVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAGKTTV 713 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 ML ALS+ + N GV LA +P + + EL +G++ + Sbjct: 714 VAMLAHALSAWGNVAKSNHNANLPAGVAWNLASIPWETPHVVLELA---IGKMAISARMA 770 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A+ T + PAHL S + +IA K+ IF G+E T LN D ++ + + Sbjct: 771 RPKVAIFTNVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDAASRR 830 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ I ++G S+ QL ++ S + +++ + + + G HMA N L L Sbjct: 831 KLE-IVTYGTSEECMCQLLRYDAASRHA--HARIRNREVSFLIGAAGSHMALNGLAVLAA 887 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +S+L ++ AI L F GRG+ L+ T+ID++YNANP SM+AA L++ Sbjct: 888 ISVLGHPLEPAIAQLESFAALPGRGEEIHLLLDGRRLTVIDDAYNANPGSMRAA---LAR 944 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + H GRRIAVLG+M E+G ++H +LA + +I V+++G AL S Sbjct: 945 LGDHIGGRRIAVLGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGDLYSDFWKALSPSS 1004 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y+E+ L ++ LVDGD V+ K S+S G + L+ L Sbjct: 1005 RGLYAESRQALKEILRERLVDGDTVLFKGSHSTGMHELVEWL 1046 >gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase [Clostridium sticklandii DSM 519] gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Clostridium sticklandii] Length = 457 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 20/359 (5%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + + AIKG ++DG+DFI A+ A +++ N S + V V+D + Sbjct: 32 DSRKIQENDCYIAIKGENFDGNDFIEQAINNKASVILSNRQ------SSNKEVITVEDTV 85 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL +A ++ +A+TGS GKTTTK+ML + T+ G+YNN IG+PLT Sbjct: 86 IALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYVFNEHFSTHRTDGNYNNEIGLPLT 145 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + + IFE+GMS LGEI +L +VRP+IA+IT I H+ E I AK E Sbjct: 146 ALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILKSQENIFKAKME 205 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQS 270 I L + +N DD + L + + Y FG+ + QLR +K QS Sbjct: 206 ISNYLNNDDYLIVNGDDKYLTSLSENEYKFNL-IKYGFGE----ECQLRASDYKAVDGQS 260 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 V G + IG H N L + I + L F P + R + Sbjct: 261 EFWVTGMGINRRFTLPAIGLHNVSNALSAIAAGLIYKIPTEKIQAGLMKFQPSKLRMQ-- 318 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L + I++SYNANP SM+A V++ + GR+IA+LGDM E+GE S + H Sbjct: 319 --ILEKNNIKYINDSYNANPESMEA---VITSFESYARGRKIAILGDMLELGEFSVAAH 372 >gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 462 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 226/468 (48%), Gaps = 31/468 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA L Sbjct: 8 EIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALC 67 Query: 69 VVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +V +++ S G + S V V++ AL LA R + ++AITGS GKT+TK+++ Sbjct: 68 IV-SEINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLV 126 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P I Sbjct: 127 GAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPDI 186 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT I +H+ N E I AK E+ + K + +N DD F ++ Sbjct: 187 AIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNFESDKF-----K 241 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLG 301 +Y G K DF +E ++ QGK+ + G G H N L + Sbjct: 242 VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKT---AYKGFSVNVPGKHNVLNSLTAIA 298 Query: 302 I---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I D+ T IK L + R +G FT+I++ YNA+P SMKAAI Sbjct: 299 CGRALDINYKDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAID 351 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 V+ I R IA+LG M E+G H +++E I ++ G A ++ Sbjct: 352 VMKNIKGK---RTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGEFGEAYREGF 408 Query: 419 PRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 409 GEINKENYKSFLNNKEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] Length = 452 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L+ T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] Length = 458 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 225/458 (49%), Gaps = 16/458 (3%) Query: 12 QAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ GA + Sbjct: 11 QMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 D+ +L PV V+D L AL LA R + ++ +TGS GKT+TK+++T L Sbjct: 71 MKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLL 128 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ A+IT Sbjct: 129 ATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAIIT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AHL + E IA AK EI GL++ G N D+ + L +T+ +F Sbjct: 189 NIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLAAETV-TF 246 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 247 GDARANDYYPTTVTLQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIAKHFGVTW 305 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L G R T+I+++YNA+P +M+AA +++ + G + Sbjct: 306 EEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD--GFAK 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHY 426 +I VLGDM E+G+ FH ++ +++ IS+V+ G + + P V Sbjct: 361 KIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPNE-RVKA 419 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +Q+ + DVV++K+S +I +L Sbjct: 420 YDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Photorhabdus asymbiotica] Length = 459 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 21/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ ++ D+R + F A+KG +D HDF AV+ GAG + +V+ + +++ P Sbjct: 29 YIRDVTTDNRKVENGSLFIALKGERFDAHDFSADAVKAGAGAL-----LVSRVLAINCPQ 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D A+ KLA R +SKA ++A+TGS GKT+ KEM L T G+ NN Sbjct: 84 VVVEDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ +F + ELG SH+GEI + +VRP A++ + AHL++F + Sbjct: 144 DIGVPLTLFRLTEQHEFAVVELGASHVGEIAYTVEMVRPETALVNNLFAAHLADFGSLAS 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR-- 261 IA AK EIF GL + GT +N + + + + +G KT+ +S ++ ADF Sbjct: 204 IAKAKGEIFTGLPEKGTAIINVESNDWAYWQ---QVIGDKTVQRFSMQQASGADFYATDI 260 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + KQ + + + S E+ G H N L + + A + LS Sbjct: 261 QVKQLTTDFCLHTPI--GSTEINLPLPGKHNVANALAASALAISVGATLRDIRLGLSELR 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GR + L +G L+D++YNAN SM A+ VLSQ+ G R+ V+GD+ + Sbjct: 319 AVPGR--LFPINLAEGKL-LLDDTYNANVGSMTVAVQVLSQMP----GYRVMVVGDIGAL 371 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 GE S+ +H + E + I V+ G Sbjct: 372 GEQSEDYHRQIGETAASCGIDRVFSVG 398 >gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TW10509] Length = 452 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] Length = 452 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMAVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLVENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 141/463 (30%), Positives = 226/463 (48%), Gaps = 17/463 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA V Sbjct: 8 EIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAV 67 Query: 69 VV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + D + + V V+D L AL+K+A R + +A+TGS GKTTTK+M+ Sbjct: 68 LTARLDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGKTTTKDMIA 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IG+PLT+ + + E+GMS GEIR L ++V+P +A Sbjct: 128 QILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T I AH+ E I AK E+ E ++ I LN DD + + + Sbjct: 188 VFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQYSS----KY 243 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y +G KN + + ++ + ++ + E+ G H N L + + Sbjct: 244 YRYG-IKNGEIKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEFG 302 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 DVD + L F P GK + +G +ID++YNANP SMKAA++VL Sbjct: 303 VDVDDMAEVLKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFPGK- 357 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIH 423 R+IAVLGDM E+GE S H ++ ++++ +I + SG + K + + Sbjct: 358 --RKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGNTSKYIAEESKVCGMKENN 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T + + ++ + +GD+++VK S +++ L E Sbjct: 416 IFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQE 458 >gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] Length = 452 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLYPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 468 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 220/447 (49%), Gaps = 21/447 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88 I+ D+R + + F A++G ++DG F A+++GA V+V+ AS+ +L+ GV Sbjct: 31 ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90 Query: 89 ---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D L A +A A R++ ++AITGS GKTTTK++ LS K +YNN Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G+PLTL + + + E+GM +G+I L + P I ++T + H+ IE Sbjct: 151 EVGLPLTLLSITPEDTAAVVEIGMRGMGQIAALAPIAEPSIGIVTNVCEVHMELLGSIEN 210 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AKAE+ + GT+ LN DD +++ S A G++ + ++G S AD + + Sbjct: 211 IAKAKAELVTAIPAGGTVILNADDPRVAGMRS-SAADGVR-VMTYGISAAADVRAEALQC 268 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ S V G+ E G H N L L +L + L+ ++ Sbjct: 269 MADGSRFMVTWGGERHEYAISLPGRHNVSNALAALAAGFVLGMTPQEMQEGLTHLTAEKM 328 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + ++ G +TLI+++YNA+P+SM+A++ + + P GRR+AVLGDM E+G + Sbjct: 329 RYEVHQV----GAWTLINDAYNASPSSMRASLETTAALYP---GRRVAVLGDMLELGTAA 381 Query: 386 QSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 ++ H D+ ++ + V G H A P H +++ Sbjct: 382 EAAHRDVGRRVAELGFAMVVTYGRQAQWTHETAEAAGCPDCCHAASHADA---AAYLRRH 438 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L+DGD V+ K S ++I L E Sbjct: 439 LMDGDTVLFKGSRGMRMEQIIAALTGE 465 >gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UTI89] gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli APEC O1] gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli S88] gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli UTI89] gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli APEC O1] gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli S88] gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IHE3034] gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UM146] gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 110-3] gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 16-3] gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H252] gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H263] gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] Length = 452 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechocystis sp.] Length = 454 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 211/449 (46%), Gaps = 33/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I D+RS+ + F A++G +DGH FI A+ GA + VV V +G ++ F Sbjct: 30 INNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGA-IAVVTDRPVEGLGE-TVAQF 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A +A R R II +TGSVGKTTTKE++ LS + +YNN Sbjct: 88 LVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFGNVHKTRANYNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL + D DF I E+ M G+I L + +P I +IT + AH+ I Sbjct: 148 IGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGSELAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ T LN D +AL ++T F + K + L Sbjct: 208 AEAKCELLAHQPPESTAILNRD-----------NALLMETAQRFWQGKTITYGLEGGDVH 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + L G S+ + G+ H A N L + + L D L+V PK GR Sbjct: 257 GTVDGENLILDGVSLPLPLAGV--HNASNYLAAIALAQCLGLDWQQLQSGLTVELPK-GR 313 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +RY+ + L+DE+YN SM A++ +L+ RR+AVLG M E+G+ Sbjct: 314 ARRYQWGQD---VVLLDETYNDGLESMLASLDLLANTPGK---RRLAVLGAMKELGDYGP 367 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK---DALPRSIH-VHYSETMDG--LFLFIQSS 440 +FH + + + L G +LA DA+ + V DG L ++++ Sbjct: 368 TFHQRVGA-----KVKALGLDGLFLLANDPNTDAIAAGANGVETQSFSDGPSLVAALKTT 422 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 L GD ++ K+SNS G +++ LL E P Sbjct: 423 LQPGDRLLFKASNSVGLGAVVSQLLAENP 451 >gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei Ss046] gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii Sb227] gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ATCC 8739] gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SE11] gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sp. D9] gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046] gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227] gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli ATCC 8739] gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11] gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)] gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli BL21(DE3)] gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Escherichia coli 042] gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli W] gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 85-1] gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella flexneri CDC 796-83] gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli EC4100B] gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli EPECa14] gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E128010] gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LT-68] gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1180] gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1357] gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli KO11] gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H120] gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H489] gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TA007] gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 117-3] gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1167] gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 5216-82] gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 3594-74] gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Escherichia coli UMNK88] Length = 452 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 459 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 215/445 (48%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR + P F IKG DGH FI A+Q GA + D +P Sbjct: 26 VTSVQFDSRQLTPGSLFVPIKG-QRDGHQFIEQAIQAGAVATLWAKDH-EDTRPADLPSI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL KLA + ++AITGS GKTTTK+M L++ ++NN Sbjct: 84 EVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLATEFNVVKTEANFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + ELGM G++ FL+ LV+P IAVIT I AH+ F + I Sbjct: 144 IGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL++ G + D+ LL ++ A+ ++ +FG D Sbjct: 204 ADAKMEITDGLKEDGCFIYDGDEP---LLAERAKAVDVEQ-RTFGMKNENDVFASDVAGT 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ ++ L + +EV IG + +N L + + V + +AL+ F+ + R Sbjct: 260 DTETSFKINLDPE-VEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNR 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + QG L D YN+NP + KA ++ + GRR VLGDM E+GE + Sbjct: 319 TEWLKG--RQGERILSD-VYNSNPTAAKAVLNSFAHTKKT--GRRFVVLGDMLELGENAD 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439 H LA+ L+ V+L G H+ AL L ++H++ + + L +Q Sbjct: 374 QMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQ 433 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 + D V++K+S+ +++ L Sbjct: 434 MIKADDCVLLKASHGIHLEKVVEQL 458 >gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 143/445 (32%), Positives = 207/445 (46%), Gaps = 22/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + IDSR + F AI+G DGH FI ++ GA + I + S P Sbjct: 28 VSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIRDGALCALSEK----RIENASYPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL +A R ++ +TGSVGKT+TKEM+ L G++NN Sbjct: 84 LVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTSTKEMIASVLGEKYNVLKTAGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + ELG+S+ GE+ L + RP I VIT I AHL + + I Sbjct: 144 IGLPLTIFNIREEHEVAVLELGISNFGEMERLAKIARPDICVITNIGVAHLEHLKSRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EIF + G+I LN DD + L A GI+ ++ FG + DF + + C Sbjct: 204 LKAKTEIFLYMNPNGSIILNGDD---DKLSTVHPANGIQPVF-FGLDDSRDFYADQVESC 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 + V S H I G HM N L + L + D IKA + P Sbjct: 260 GLRGTNAVFHTPNSTFSAHISIPGEHMVLNALAGIAAGYALGMN-DEEIKAGIEALVPLA 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + T+ID+ YNANPAS KA++ VL++ + R+IAVLGDM E+G Sbjct: 319 GRNN----LIETDSLTIIDDCYNANPASTKASLDVLAK----ADTRQIAVLGDMFELGPT 370 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 + H ++ + + I + G H+ V Y ET D F L Sbjct: 371 EKQMHYEVGKYAAGLGIDILVCIGQLSEHMATGASEQCSKTQVFYFETKDDFFEQADRIL 430 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466 D V+VK+SN F ++++L E Sbjct: 431 NPKDTVLVKASNGMKFSEIVSVLKE 455 >gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halorhodospira halophila SL1] gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Halorhodospira halophila SL1] Length = 450 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/438 (30%), Positives = 200/438 (45%), Gaps = 28/438 (6%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V G+++DSR F A+ G DGHDF A +GA + V+ T V ++ P Sbjct: 23 GAVTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGA-VAVLGTRPVGAL-----P 76 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL L R RS ++A+TGS GKTT KE+L L+ T A G+ N Sbjct: 77 TLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKTTVKELLAAMLAESGPTLATEGNRN 136 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N +GVP L R+ F + E+G + GEI LT +P + V+T PAHL F ++ Sbjct: 137 NLLGVPEMLCRLGAGHRFAVIEMGANAPGEIAQLTAWAQPDVGVVTNAGPAHLEGFGSLD 196 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A AK E+F+GL + G LN DD F L + + G + +FG +++ Sbjct: 197 GVARAKGELFQGLPRQGVAVLNADDDFCGLWREMA---GARRCLTFGADAG------QFR 247 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S +E+ L G M +G H AQN+ + L T + +S Sbjct: 248 HRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAACAAALEVPARTILDRISSAAAVP 307 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLGDMCEMG 382 GR + R + G + L+D++YNANPAS++AAI ++ Q +P +LG M E+G Sbjct: 308 GRLELRRG--DHGGW-LVDDTYNANPASLQAAIDTVTGFQAAPW------LLLGAMGELG 358 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + +H + +W G +A + L ++ L Sbjct: 359 AETAEWHSRAGRRARAAGVERLWTLGEAAAPAAEAFGEGGRCF--DNASALIEACRAELP 416 Query: 443 DGDVVVVKSSNSCGFYRL 460 VV++K S S R+ Sbjct: 417 ADAVVLIKGSRSAAMERV 434 >gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] Length = 451 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 32/445 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI DSR++ E F A++G +DGH F+ A+ KGA +V+ + + PV V Sbjct: 32 GIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIAKGAIAAIVDFEY----ENPGFPVLRV 87 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L A ++ R R +I +TGSVGKTTTKE++ L + + + G+YNN IG Sbjct: 88 KDTLKAYQQIGRWWRDRFNIPVIGVTGSVGKTTTKELIAAVLGTKGQVHKTYGNYNNEIG 147 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL + + D+ + E+ M G+I LT + RP I VIT + AH+ E IA Sbjct: 148 VPKTLLELGAENDYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAE 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ + +N+D+ LL A + + + ++G S D Q Q + Sbjct: 208 AKCELLAEMAADSVAIINHDNP---LLMATAAKVWHGEVLTYGFS-GGDIQ----GQLLD 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 MEV +++ G H A N L L + +L D + V P GR + Sbjct: 260 NDQMEV----AGIQLPLPLPGRHNATNFLAALAVAKVLGIDWSNLKAGVEVDMPT-GRSQ 314 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R+ + ++DE+YNA P +M A++ +L+ R+IAVLG M E+GE SQ Sbjct: 315 RFTLPND---VIILDETYNAAPEAMIASLQLLADTPGK---RKIAVLGAMKELGERSQQL 368 Query: 389 HIDLAEVLSLYNISH--VWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVD 443 H + E + N+ V + G A+ + +P ++E + L F+Q+ Sbjct: 369 HQRVGETVRKLNLDGLLVLVDGEDAEAMALSAEGIPSECFATHAELVARLKTFVQT---- 424 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468 GD ++ K+++S G R++N L EF Sbjct: 425 GDRLLFKAAHSVGLDRVVNQLRAEF 449 >gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 455 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 138/431 (32%), Positives = 213/431 (49%), Gaps = 33/431 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GISID+R+I + F +G +GH F+ A +KGAG + D IP+ Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGAGASLWQKDEPNP--PEGIPLL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL ++A A R KA I ITGS GKT+TK++L L+ K IG++NN Sbjct: 82 FVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGNFNNQ 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+P+T+ ++ D + + E+GMS GEI FLT L +PH+ VIT I AH+ + I Sbjct: 142 LGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGI 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +G++ G +F + D+ + L AK L +FG N Sbjct: 202 AQAKFEIIQGMQPDGLLFYDGDEPLLQELVAKEMHL---NAVAFGLEPNNLLYADHIHAN 258 Query: 267 SEQSWMEVQ--LQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFH 321 + S ++G V +G H +N L+ + I + + + T+++ + + Sbjct: 259 ANGSSFTTHGMIEGDFFISV---LGKHQVKNTLVAMLISHQLGLKNEQIRTSLEHVVLTD 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMC 379 + + + AL I+++YNA P S+KAAI + S I P + VLGDM Sbjct: 316 MRMQQVQGTNGAL------FINDAYNAAPTSVKAAIQFIATSTIRP----EKWLVLGDML 365 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVH--YSETMD 431 E+G Q FH LAE + I +V L G + VL + R ++ Y+ ++ Sbjct: 366 ELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMTHLYEVLKERFGAERLLYAEDDYTAIIE 425 Query: 432 GLFLFIQSSLV 442 L L +SS+V Sbjct: 426 KLKLANESSIV 436 >gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 454 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 215/448 (47%), Gaps = 35/448 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ I P Sbjct: 29 IEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFESGA---------VATFSEKEISGHPYL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A KLA + + +IA+TGS GKT+TK+M+ L++ KTY G+YNN Sbjct: 79 LVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+G HLG+I L+ + +PHIAV+T I AHL F E+I Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHLGDIHLLSEIAQPHIAVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G+ G + D L + + FG+++ + + + Sbjct: 199 AQGKMQITDGMNSHGILIAPGDPIIDPYLPEN------QMVIRFGENQEIFVKSIEESKN 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S V Q ++ + G + A N ++ + +L + I+AL R Sbjct: 253 SLSFTTNVLNQALTLPLS----GKYNATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + +QI+P+ +G++IA+L DM E+G S Sbjct: 309 TE-WKKASNGA--DILSDVYNANPTAMRLILETFTQIAPNQDGQKIALLADMKELGPSSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKD------ALPRSIHVHYSETMD---GLFLFI 437 H L E L+ +I+H+ G + AL + + ++T D L + Sbjct: 366 DLHCQLIEALNPDDINHLIFYGKDIEALAQLASQLYPIGKVFFFRKTDTEDQFEDLCHHV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 Q L D ++VK S+S ++N LL Sbjct: 426 QEILGANDQILVKGSHSMNLEEVVNRLL 453 >gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Edwardsiella tarda FL6-60] Length = 458 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 184/380 (48%), Gaps = 17/380 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A++G ++DGHDF A + GAG ++VN + +L +P Sbjct: 24 VTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQAREGGAGALLVNRRL-----ALDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L R + A ++A+TGS GKT+ KEM L G+ NN Sbjct: 79 LVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ DF + ELG +H+GEI + L RPH A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWK 264 A AK EIF GL GT +N D + +E + HAL + ++ F A DF + Sbjct: 199 AQAKGEIFAGLPPQGTAIVNADSNDWENWQ---HALTEQRVWRFSPQAGAGVDFYASAVR 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + +V+ G H N L + + A + + L+ Sbjct: 256 SDAAGTHFTLHTPAGQCDVLLPLPGRHNIANALAAAALTMSVGATLTQVQQGLAGLQAVP 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR R +Q L+D+SYNAN SM AA VL H G R+ V+GDM E+G Sbjct: 316 GRLFPIRLGEHQ---LLLDDSYNANVGSMSAAAEVLG----HMPGYRVMVVGDMAELGAE 368 Query: 385 SQSFHIDLAEVLSLYNISHV 404 +++ H + + I V Sbjct: 369 AEACHRRVGQAARAAGIDKV 388 >gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 458 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/464 (28%), Positives = 225/464 (48%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKEGLVTLQMT---GMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G ++I VLGDM E+G FH ++ +++ IS+V+ G + + + Sbjct: 356 D--GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFP 413 Query: 424 VHYSETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + D L +Q+ + DVV++K+S +I +L Sbjct: 414 TERVKAYDNKEELAKELQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] Length = 462 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 225/469 (47%), Gaps = 29/469 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHAL 242 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK---- 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTL 300 +Y G K DF +E ++ QGK+ + G H N L + Sbjct: 242 ----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAI 297 Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ I D+ T IK L + R +G FT+I++ YNA+P SMKAAI Sbjct: 298 ACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 V+ I R IA+LG M E+G H +++E I ++ G A ++ Sbjct: 351 DVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREG 407 Query: 418 LPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 408 FEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKEL 456 >gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Clostridium botulinum F str. 230613] Length = 462 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/471 (28%), Positives = 229/471 (48%), Gaps = 33/471 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G + S V V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L+ K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 125 LVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298 +Y G K DF +E ++ QGK+ G+ G H N L Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295 Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ I D+ T IK L + R +G FT+I++ YNA+P SMKA Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI V+ I R IA+LG M E+G H +++E I ++ G A + Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYR 405 Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] Length = 462 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/470 (28%), Positives = 228/470 (48%), Gaps = 31/470 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G +S V V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 125 LVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMT 299 +Y G K DF +E ++ +GK+ + G H N L Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSLTA 296 Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ I D+ T IK L + R +G FT+I++ YNA+P SMKAA Sbjct: 297 IACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAA 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I V+ I R IA+LG M E+G H +++E I ++ G A ++ Sbjct: 350 IDVMKNIKGK---RTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYRE 406 Query: 417 ALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 407 GFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 209/447 (46%), Gaps = 28/447 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + ID+R + F AI+G +DGHDFI A + GA V + ++ P Sbjct: 43 VNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGAAAAVSDREI-----ETDRPYI 97 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LA R ++ +TGSVGKTTTKEM+ LS+ KT G+ NN Sbjct: 98 LVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKEMIAAVLSAGYKTLKTQGNLNNA 157 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ + + + E+GMS LGEI LT P I VIT I +HL E I Sbjct: 158 IGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALPDIGVITNIGVSHLETLGTRENI 217 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 AK EI EG+ + +N D+ + ++ + + + G + +AD++ + Sbjct: 218 LKAKLEILEGMAPGAPLVINGDNDLLQTVQLD------RPVLTCGIDNPDADYRAVNIQP 271 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++ ++ V+ IG H N L + + AL + P Sbjct: 272 RGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGRFAGMEDAAIATALGTYTPS-- 329 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R G LI++ YNA+P SM+AA++ L Q+S GR+IAVLGDM E+G +S Sbjct: 330 -GMRQNTRTVNGVM-LIEDCYNASPDSMRAALTTLQQLSCA--GRKIAVLGDMLELGPVS 385 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGLFLFIQSS 440 Q H + E+ + ++ F L+ + A +P HV + + L + Sbjct: 386 QQAHAEAGELAQKCGVDALFC--FGALSRETAKHGEGIP---HVEWFDDKQSLAQSLSGF 440 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 + GD V+ K+S +I+ + ++ Sbjct: 441 VQPGDAVIFKASRGMKLEEVIHAVFDK 467 >gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 505 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 155/511 (30%), Positives = 225/511 (44%), Gaps = 64/511 (12%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T D+ + G S G P+ V G + DSR I F A+ G + DGHDF A+ + Sbjct: 5 TLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQSAIDR 64 Query: 64 GA-GLVVV-------------------NTDMVASIGSLSIPVFGVDDVLGALNKLA--VA 101 GA G +V N+D+ A+ P V+ + KLA VA Sbjct: 65 GAVGALVARDVGVPAVILPPVEQIEGDNSDLAAND-----PDGSARAVVAGMAKLAAHVA 119 Query: 102 ARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 L K I ITGS GKT+TK+++ L+ +T A GS+NN IG+P T+ R D Sbjct: 120 TTLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTED 179 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 DF + E+ +G I LTH+ P I V+ + AHL F E IA AK E+ E L Sbjct: 180 TDFLVAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEALPA 239 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQ 277 G LN DD + +++ A + +S NA++ + S+ Sbjct: 240 DGIAILNADDELVAGMASRTKARVV--CFSTDPRSNAEYVAEGITLDDVARASFTMHSPN 297 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + +V G H N L T + D T +ALS H R Sbjct: 298 SEPQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLS--VNRMDVNTRAD 355 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVL 396 T+I+++YNANP SM+A I+ L + G R IAVLG+M E+GE S H L L Sbjct: 356 GVTVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVEAHTALGNEL 415 Query: 397 SLYNISHVWLSG-------------------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 + Y ++H+ + G L ++DA R SE + + L Sbjct: 416 ARYRVTHLVVVGESAETAALLSRAAERGIESVSALDIEDATER-----VSEILRTVPLGE 470 Query: 438 QS--SLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ D DVV+VK+SN+ G +R+ LL+ Sbjct: 471 ENWRDRPDRDVVLVKASNAAGLWRVAERLLD 501 >gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 458 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 131/464 (28%), Positives = 227/464 (48%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 + A+IT I AHL + E IA AK EI GL++ G N D+ LL + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEP---LLTNRVPEMNL 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 240 IAETVTFGDARANDYYPTTVALQATGTHFKMN-RDENISFYLPVLGKHNVYNTLASMAIA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 299 KHFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G ++I VLGDM E+G FH ++ +++ I++V+ G + + + Sbjct: 356 D--GFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFTYGKLGAQIAEGAKINFP 413 Query: 424 VHYSETMDGLFLFIQS--SLVD-GDVVVVKSSNSCGFYRLINLL 464 + + D ++ ++VD DVV++K+S +I +L Sbjct: 414 IERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEVITML 457 >gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 144/491 (29%), Positives = 226/491 (46%), Gaps = 51/491 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +LL+A G+ + V IS+DSR++ + F I G D H F+ A+ GA Sbjct: 5 TVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGA 64 Query: 66 GLVVVNT-----DMVASI------------GSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 +V + D+ A + +L V D AL L R Sbjct: 65 AVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSL 124 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++ ITGSVGKTTT+EM+ ALS+ K Y G+ N+ +GVP+T+A +P + G+ ELG Sbjct: 125 PLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGVIELG 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 MS GE+ + + R AV+T I AH+ E I K I EG+ G +FLN D Sbjct: 185 MSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILFLNGD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287 D + K G K + +G ++ D++ +E +E +G + HG Sbjct: 245 DPLLASVVPKE---GRKKVL-YGLGRDCDYR-------AEDLHLE---EGYPVFTAVHGD 290 Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +G HM N + L + ++ A AL F +GR + + G Sbjct: 291 CRVRVRLKVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIF----EWGG 346 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+ID+SYNA+P SMKA + VL + GE R+IAVL DM E+G ++ FH ++ + Sbjct: 347 VTVIDDSYNASPVSMKAGLEVLDSVK--GE-RKIAVLADMKELGPDTERFHAEIGAYIGE 403 Query: 399 YNISHVWLSGFHVLALKDAL--PRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + + V L G + + R+ H +++ ++ ++ +GD ++ K SNS Sbjct: 404 HPLDMVLLLGELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILFKGSNSM 463 Query: 456 GFYRLINLLLE 466 + L E Sbjct: 464 KLSEAVKHLKE 474 >gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 196/388 (50%), Gaps = 36/388 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR IAP + F A+ GP +DGH+++ KGA +V ++ + S+P V Sbjct: 27 GVSTDSRGIAPGQLFVALTGPRFDGHEYLEQVAGKGAVGALVEHEVEGA----SLPQLVV 82 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A + + A+TGS GKTT KEML L + A G+ Sbjct: 83 LDTRKALAQLGAMNRNAFVDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + D + ELG S +GEI F L +PH+A+IT AH+ F G Sbjct: 138 LNNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF--- 258 + I AK EI EGL+ TGT LN DD F + + ++ G + + +F + AD Sbjct: 198 PDRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRA---GERKVMTFALNNPAADLHAT 254 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 LR+ + + L +++ + +G H N L L ++ L+ Sbjct: 255 DLRRDARGCPAFMLNSPLGAAPVQL--NLLGTHNVANALAAAAAACALGVSLEGIAAGLN 312 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P +GR + +ID++YNANPAS+ AA+ +L+ S GR + VLGD+ Sbjct: 313 NVQPVKGRAV---AQIASNGVRVIDDTYNANPASINAAVDILTGFS----GRTVLVLGDI 365 Query: 379 CEMGELSQSFHIDL-----AEVLSLYNI 401 E+G+ ++ H ++ +V +LY + Sbjct: 366 GELGDWAEQGHREVGAYAAGKVSALYAV 393 >gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium wasabiae WPP163] Length = 453 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 185/380 (48%), Gaps = 17/380 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R ++ F A+KG +D HD+ AV+ GA ++V+ + + +P Sbjct: 24 IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRL-----HIDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L R +S A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 LVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + T LVRP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264 A AK EIF GL G +N D + F + L KT++ F N DF Sbjct: 199 AQAKGEIFSGLPVDGVAIVNADSNDFPHWQVT---LNHKTVWRFSPQAACNIDFFASDVA 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + +V+ G H N L + + A ++ LS Sbjct: 256 VLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMSVGATLEAVKAGLSQLQAVP 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + AL++G L+D+SYNAN SM AA VL+ + G R+ V+GDM E+G+ Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLADMP----GYRVMVVGDMGELGDD 368 Query: 385 SQSFHIDLAEVLSLYNISHV 404 + H + E + I V Sbjct: 369 APECHRQVGEAARVAGIDCV 388 >gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] Length = 473 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/391 (32%), Positives = 194/391 (49%), Gaps = 39/391 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +SI++R+++ + F AIKG +DGH F+ +A +GA +VV ++V S +P + V Sbjct: 30 VSINTRTMSVGDLFVAIKGDQFDGHQFVANAQNQGAIALVVEKEIVDS----DLPQWLVG 85 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIGSYNN 145 D AL +A A R I+AITGS GKTT K ML +A+S +A G+ NN Sbjct: 86 DTTLALGHIAEAQRDNFLGKIVAITGSSGKTTVKGMLESILRVAVSD--HVFATKGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPL+L + + + E+G S +GEI++LT + +P +A+I + AH+ F I+ Sbjct: 144 HIGVPLSLLSLKSQHQYAVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDN 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSF---------------FELLKAKSHALGIKTIYSF 250 IA K EI+ GL G +N D + F S+A+ + ++ + Sbjct: 204 IAKGKGEIYNGLTNAGVAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANI 263 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 A +K C++ ++QL KS E+ +G H N L L + Sbjct: 264 ----TATNVKQKHNGCAK---FDLQLLEKSTEINLSVLGMHNVANALAASTCAYALNISI 316 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + LS F G R C T+ID+SYNANP S AAI VLS +S + Sbjct: 317 EDIAQGLSEF---TGVAGRLHCLEGVNDSTVIDDSYNANPNSFCAAIDVLSDMSA----K 369 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + V+GDM E+G+ S S H + + NI Sbjct: 370 TVLVMGDMAELGDDSDSEHEKIGRYANEKNI 400 >gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152] gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152] Length = 418 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/436 (30%), Positives = 217/436 (49%), Gaps = 35/436 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I FFA+KG +++G+ F A++ GA +V+ ++ + ++ + V Sbjct: 16 VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQDAIIL----VP 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L +LA R + KATII +TGS GKTTTKE++ LS KT A G+ NNHIGV Sbjct: 72 NVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL MP+D + GI E+G +H EI FL+ + P IT AHL F G+E + Sbjct: 132 PLTLLSMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNFGKAHLEGFGGVEGVIKG 191 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ LE+ I F+N DD ++ K K+ I TI F S L++ Sbjct: 192 KSELYHFLEQNNKIAFINPDDKI-QVDKTKN----ITTI-PFLPS----IALKEANPF-- 239 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 VQL ++ + + IG + N+ + + I + D +A+ + R + Sbjct: 240 -----VQLSYDNLVINSNLIGTYNYTNIAIAITIGNYFKVKDDVIKEAIEGYESTNNRSQ 294 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +NQ +I ++YNANP+SMK A+ + +I +LGDM E+G+ Sbjct: 295 ----IINQNSNVIILDAYNANPSSMKVALENFHALKA---DHKIVILGDMFELGDARLEE 347 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + N + + G H K+ + + +T D ++++ ++ Sbjct: 348 HQQIVNMATQMNFNGYYFVGEHFYQTKE------NENLFKTFDDFKNDFENNIPSNSSIL 401 Query: 449 VKSSNSCGFYRLINLL 464 +K S R++ LL Sbjct: 402 IKGSRGMRLERVVELL 417 >gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14019] gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14019] Length = 577 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 189/408 (46%), Gaps = 39/408 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLSIPVFGV 88 DSR + F AI G DGHDF+ A + GA + +V D + I V Sbjct: 73 DSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENS 132 Query: 89 DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + LG L K + R L + +II ITGSVGKTTTK+ML LS++ T A IGS+NN Sbjct: 133 VEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNE 192 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT ++ + F I E+G +H+GEI LT + P +AV+ + AHL F +E I Sbjct: 193 IGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERI 252 Query: 207 ASAKAEIFEGLEKTGTIFLNYDD-------SFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 A AK+EI GL G LN DD S + K + T F S N ++Q Sbjct: 253 AQAKSEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQ 312 Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEV------VHHGI-GYHMAQNMLMTLGIVSILTADVD 311 L E E L K+ + VH I G H N + + ++D Sbjct: 313 LSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLD 372 Query: 312 TAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH---- 366 + K L V H R + + + N FTLID+S+NANP SMKA I L H Sbjct: 373 SIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHD 432 Query: 367 -------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 RIAVLG M E+G + H + E ++ +NI Sbjct: 433 LNVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNI 480 >gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus epidermidis FRI909] Length = 451 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 143/443 (32%), Positives = 209/443 (47%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+SIDSR I F KG + DGH FI A+ GAG V + S + P+ Sbjct: 26 INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKENRYS-EEIQGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ LS+ K G+YNN Sbjct: 85 WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL + D + I E+GMS +I L+++ +P IAVIT I +H+ + E I Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIAVITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ K H +K N+D Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVTQVKDAKLISIGLNSDNTYTCHMND 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + K E H I G H +N + + I L + + Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R+ + N T+I+++YNA+P SMKAAI LS + +GR+I +L D+ E+G S Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442 Q H + E L NI ++ G + D+ I V ++ D IQ S + Sbjct: 371 QVMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKHFDQKEQLIQTLISQVK 428 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 D V+VK S +++ LL Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451 >gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas naphthalenivorans CJ2] gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 466 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 175/363 (48%), Gaps = 16/363 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+RS+ P + F A+KG H+D H+F+ A +GA + + + +P V Sbjct: 27 VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQHGLREA----GLPGLEVA 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHI 147 D AL +LA R + +IA+TGS GKTT +M+ L + K A G+ NN I Sbjct: 83 DTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILRAWKPDAALATEGNLNNDI 142 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ G+ ELGM+H GEI +L HL RP +A++ HL + +E +A Sbjct: 143 GVPLTLLRLRASHQVGVIELGMNHPGEIAYLAHLARPSVALVNNAQREHLEFMATVEAVA 202 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266 + L+ G DD + + + + G + + +F + AD +W+ Sbjct: 203 QENGSVLASLDADGIAVFPADDVYTAVWRRLA---GERQVLTFALAAPADVTASARWEGD 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 Q +E Q +E H G H +N L + LS F P +GR Sbjct: 260 GWQ--VEAQTPSGPIEFSLHIAGRHNVKNALAATASALAAGVPLSFIAAGLSAFVPVKGR 317 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + L TLID++YNANP SM+AAI VL+++ G R+ V+GDM E+G Sbjct: 318 SRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLAELP----GPRLLVMGDMAEVGSQGP 373 Query: 387 SFH 389 FH Sbjct: 374 QFH 376 >gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14018] Length = 576 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 189/408 (46%), Gaps = 39/408 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLSIPVFGV 88 DSR + F AI G DGHDF+ A + GA + +V D + I V Sbjct: 72 DSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENS 131 Query: 89 DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + LG L K + R L + +II ITGSVGKTTTK+ML LS++ T A IGS+NN Sbjct: 132 VEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNE 191 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT ++ + F I E+G +H+GEI LT + P +AV+ + AHL F +E I Sbjct: 192 IGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERI 251 Query: 207 ASAKAEIFEGLEKTGTIFLNYDD-------SFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 A AK+EI GL G LN DD S + K + T F S N ++Q Sbjct: 252 AQAKSEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQ 311 Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEV------VHHGI-GYHMAQNMLMTLGIVSILTADVD 311 L E E L K+ + VH I G H N + + ++D Sbjct: 312 LSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLD 371 Query: 312 TAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH---- 366 + K L V H R + + + N FTLID+S+NANP SMKA I L H Sbjct: 372 SIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHD 431 Query: 367 -------------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 RIAVLG M E+G + H + E ++ +NI Sbjct: 432 LNVNTEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNI 479 >gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 460 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 222/448 (49%), Gaps = 37/448 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 + G+ IDS+ I F I DGHD++ A++KGA + S G IP Sbjct: 33 MQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWK----KSYGDPPKGIP 87 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL K+A R S +I ITGS GKT K++++ LS+ + + G+ N Sbjct: 88 IIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 147 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IG+PLT+ M D +F I E+GMS G+IR L + +P +A+IT I +HL E Sbjct: 148 SQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSRE 207 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----QL 260 EIA AK EI +GL G N D+ LL + LGI+ GK N F QL Sbjct: 208 EIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIEGKSFGGKYTNDLFPTNVQL 264 Query: 261 RKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 ++ K + +V L GK H N ++ + + ++ +A Sbjct: 265 DEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPIEKIQEA 313 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L + + R++ + FT+I++++NA+P+SMKAAI L +++ + ++I V+G Sbjct: 314 LQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKKIIVIG 368 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ ++++H ++ E+L+ +I +V+ G + + ++ H ++ D Sbjct: 369 DMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSFDNKAKI 428 Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLI 461 + L DVV++K S ++ Sbjct: 429 AEEVLKVITKKDVVLLKGSRGMALEEIV 456 >gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15] Length = 452 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] Length = 465 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 224/448 (50%), Gaps = 28/448 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N + DSR F A+KG ++DGH F+ A +GA ++V +V S ++P Sbjct: 23 IINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVE-HLVES----NLPQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +A R + +I ITGS GKTT KEM+ L A G++NN Sbjct: 78 VIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVASILRQKGNLLATQGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL R+ + + E+G +H+GEI + L +P ++VI + AH+ F +E Sbjct: 138 HIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCASLAKPDVSVINNVEAAHIEGFGSVEG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A AK+EI++ L + GT +N D +F + + G++ I + + K+A+F Sbjct: 198 VAKAKSEIYQALSEEGTAVINLDSNFAD--QWIEQFAGLQKI-TVSRHKDANFVA---DN 251 Query: 266 CSEQS------WMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 C Q M+ G S + V + G H N L+ + S AD++ L Sbjct: 252 CQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSNALVAAALASAAGADMEIIKVGL 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 +GR +++ A G +ID++YNA+ AS+KAAI L+ +S G ++ VLGD Sbjct: 312 ETMVSVKGRLNQFKAA--NGAL-IIDDTYNASVASVKAAIDYLTSLS----GTKVLVLGD 364 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G+ S+ +H ++ E NIS + +SG V +A + E + L + Sbjct: 365 MAELGDESEQYHREVGEYAKENNISQLLVSGHWVKYSTEAFGDK--AQWFENKELLVSHL 422 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S + ++VK S S ++++ L+ Sbjct: 423 NSVIQSDYKILVKGSRSAQMEQVVDALV 450 >gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] Length = 457 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 216/448 (48%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N +S D+R++ F AI G +D HDF AV+ A ++V + L+I Sbjct: 28 INAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEANASALLVERKL-----DLNITQV 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL +L+ + +AITGS GKTT KEM+ L K G++NN Sbjct: 83 VVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGNFNND 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D+ + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + Sbjct: 143 IGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQ 265 AK EIF+GL T +N + + + + L KT+ +F + S+ AD+ + Sbjct: 203 KQAKGEIFQGLAAGDTAIVNLESNGGDFW---NEVLADKTVLTFSEGSREADYFAENIEI 259 Query: 266 CSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ ++Q + V IG H N L + A +D L+ + Sbjct: 260 NDQGEACFDMQTPQGATAVELGIIGQHNVTNALAAAALSIQFGATLDEIKSGLANLISVK 319 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + + + N LID+SYNA+ +MKAA +LS +G+R +LG+M E+G+ Sbjct: 320 GRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLSSF----KGQRWLILGNMAELGDE 372 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-- 442 S + H + E + + HV G + + + H++ T + I+ L Sbjct: 373 SLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT---HFA-THQAMIAHIEQHLRLP 428 Query: 443 --DGDVVVVKSSNSCGFYRLINLLLEEF 468 ++VK +NS G ++ L E F Sbjct: 429 ENASHTLLVKGANSAGMSKIAAALKENF 456 >gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 454 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/448 (29%), Positives = 222/448 (49%), Gaps = 37/448 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 + G+ IDS+ I F I DGHD++ A++KGA + S G IP Sbjct: 27 MQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAMEKGAAASLWK----KSYGDPPKGIP 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL K+A R S +I ITGS GKT K++++ LS+ + + G+ N Sbjct: 82 IIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKDIISTILSTTYRVHKTKGNLN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IG+PLT+ M D +F I E+GMS G+IR L + +P +A+IT I +HL E Sbjct: 142 SQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSRE 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQL 260 EIA AK EI +GL G N D+ LL + LGI+ GK N + QL Sbjct: 202 EIAKAKFEIVDGLNDGGLFLYNGDEP---LLSQNINMLGIEGKSFGGKYTNDLFPTNVQL 258 Query: 261 RKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 ++ K + +V L GK H N ++ + + ++ +A Sbjct: 259 DEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPIEKIQEA 307 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L + + R++ + FT+I++++NA+P+SMKAAI L +++ + ++I V+G Sbjct: 308 LQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKKIIVIG 362 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ ++++H ++ E+L+ +I +V+ G + + ++ H ++ D Sbjct: 363 DMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSFDNKAKI 422 Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLI 461 + L DVV++K S ++ Sbjct: 423 AEEVLKVITKKDVVLLKGSRGMALEEIV 450 >gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 455 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/450 (29%), Positives = 218/450 (48%), Gaps = 31/450 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A + GA + D+ P Sbjct: 26 LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGAVAIFSEKDLPGK------PHL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A LA + + +IA+TGS GKT+TK+M++ LS+ KTY G+YNN Sbjct: 79 LVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+G H+G+I L+ + RP IAV+T + AHL F ++I Sbjct: 139 IGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSRDKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + DS + S+ + + FG + + + ++ Sbjct: 199 AQGKMQIVDGMDSNG-ILIAPGDSIID-----SYLPENQMVIRFGDHQELNVTDIREEKD 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S V S+ + G + A N ++ + +L + I+AL R Sbjct: 253 SLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLF 436 + H L + LS I + G + L + P HV + ++ + + Sbjct: 366 ALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFRKNQQADQFEDMVRQ 424 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q L D +++K SNS G +L+N L+E Sbjct: 425 VQQLLAPSDQILLKGSNSMGLAKLVNRLVE 454 >gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] Length = 458 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 202/389 (51%), Gaps = 24/389 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S D+R+I + ++G ++GHDF+ A QKGA V+ +PV Sbjct: 27 VSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAAAVLWAER--EGTPPEGVPVV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +LA R + +I +TGS GKTTTK+M+ LS+ + G+ NNH Sbjct: 85 VVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLSTHYRVQKTEGNLNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + + E+GMS GEI LT + +P AVIT I +HL E I Sbjct: 145 IGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAKPDAAVITNIGESHLQELGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWK- 264 A AK EI GL G +F+ + D LL + L + + + +FG + D+ + Sbjct: 205 AKAKLEILAGLHHDG-LFVYHGDE--PLLTERVPKLPLPRHVVTFGAGEQNDYYPTDVRI 261 Query: 265 QCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSV 319 + S++ L G++ M V +G H N L + + D +D ++ L V Sbjct: 262 EAGGTSFVINALPGRTLFMPV----LGKHHVYNALAAIAVARFFGIDWEGIDASLSRLQV 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R + FT+I+++YNA+P SM+AA+ +L ++S G ++IAVLGDM Sbjct: 318 TR------MRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQELS--GYRQKIAVLGDML 369 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+ +FH ++ EVL + +V+ G Sbjct: 370 ELGDEEVAFHREIGEVLRPGMVDYVFTYG 398 >gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 155-74] Length = 452 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S + L E Sbjct: 426 VITILVKGSRSAAMEEAVRALQE 448 >gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] Length = 974 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/391 (32%), Positives = 192/391 (49%), Gaps = 38/391 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R++ + FFA+ G +D HDF+ A GA VV+ + + +P V Sbjct: 541 GVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWV-----DVDLPQIKV 595 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D AL A R R ++A+TGS GKT+ KEML S + A G+ NN IG Sbjct: 596 EDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEGRVLATSGNLNNDIG 655 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ F + ELG +H+GEI + LVRP A+IT + AHL F IA Sbjct: 656 VPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRPDAALITNVGEAHLEGFGSRNNIAK 715 Query: 209 AKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AK+EI+ GL G +N DD + F L A + L +S ++ Sbjct: 716 AKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNASRNVL----TFSIENTR---------AN 762 Query: 266 CSEQSW---------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 C +SW +EV + G+ +++ + IG H N L A + + Sbjct: 763 CFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAARAAGASLTSIRDG 822 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ P +GR + +L G + ID++YNANP+SM+AAI L+++ ++ +LG Sbjct: 823 LNKLQPFKGR--MFPKSL--GRWHWIDDTYNANPSSMRAAIDALARLDEP----KVLILG 874 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 M E+GE S H D+ + I +++S Sbjct: 875 RMGELGEQSAKLHADIGAYAARAGIRRLFIS 905 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 137/327 (41%), Gaps = 35/327 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83 V+G+ DSR + + F A+KG H DG D+I A+++GA V+ + V++ ++ Sbjct: 24 MVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAEQVVNAHG 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V DD+ L +A+R + + +IA+TG+ GKTT +L L + ++ Sbjct: 84 NVIWRDDLRSELGD--IASRFYDEPSKQMRVIAVTGTNGKTTVSHLLVRLLMRLGESAKT 141 Query: 140 IGS----YNNHIGVPLT------------LARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182 IG+ + +H+ +PL LA D F E L + R V Sbjct: 142 IGTLGYGHPDHL-IPLANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRL--GCV 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSH 240 AV T I HL ++ AKA++ + GL + LN DD+ + A + Sbjct: 199 EISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLR---NLVLNADDAGVAKMAAVAE 255 Query: 241 ALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+K ++ S N D L + ++++++ + +G N+L Sbjct: 256 H-GVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFNVANILAV 314 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326 L + + AL P +GR Sbjct: 315 LAALVSEGFSASLVVDALKEIAPVKGR 341 >gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] Length = 451 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 209/443 (47%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+SIDSR I F KG + DGH FI A+ GAG V + S + P+ Sbjct: 26 INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKENRYS-EEIQGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA A +IA+TGS GKTTTK+M+ LS+ K G+YNN Sbjct: 85 WVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLSTEFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL + D + I E+GMS +I L+++ +P IA+IT I +H+ + E I Sbjct: 145 IGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIAIITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL+ G + D+ K H +K N+D Sbjct: 205 AKAKFEITTGLKTNGIFIYDGDEPLL-----KPHVTQVKDAKLISIGLNSDNTYTCHMND 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + K E H I G H +N + + I L + + Sbjct: 260 VKNEGIHFTINQK--EHYHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAM 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R+ + N T+I+++YNA+P SMKAAI LS + +GR+I +L D+ E+G S Sbjct: 318 RMERHESSNN---VTVINDAYNASPTSMKAAIDTLSVM----KGRKILILADVLELGPNS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SSLV 442 Q H + E L NI ++ G + D+ I V ++ D IQ S + Sbjct: 371 QVMHKQVGEYLKDKNIDVLYTFGKEASYIHDS--GKIFVKEAKHFDQKEQLIQTLISQVK 428 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 D V+VK S +++ LL Sbjct: 429 PEDKVLVKGSRGMKLEEVVDALL 451 >gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] Length = 455 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 221/476 (46%), Gaps = 39/476 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF + Q G PQG V + DSRS+ + F A++G +DGH FI A ++GA Sbjct: 5 TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGV---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +V + A + P FGV + L AL +L R +I +TGS GKT+T Sbjct: 65 AGAIVE-EFPAEL----PPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++ L + G+ NNHIG+PLTL R G+FE+GM+H GEI L + Sbjct: 120 KDLTASVLGENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I AH+ E IA K + E L +GT+ L+ +D F + A++ A Sbjct: 180 APEVGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAARTKAD 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + G+ +D + + + + +G++ G HM +N ++ + Sbjct: 240 VVLAGINKGEVFASDL-----RPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAISV 359 ++ LS +GR L Q +ID++YNANP S+ AA+ Sbjct: 295 GRAFGLSLEECAAGLSKLRLTKGR-------LEQKMIRGIQVIDDTYNANPDSVAAALRT 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV--------WLSGFHV 411 L+ + GRRIAVLG M E+G ++ H + EV + ++ V W++ Sbjct: 348 LASMPAV--GRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWIT---E 402 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + V +E + + + GD+V++K S S R++ LL + Sbjct: 403 AAWRGGVEKVVRVESTEEATKVLRDLAKA---GDLVLIKGSRSARMERIVEGLLAQ 455 >gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] Length = 453 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 145/466 (31%), Positives = 217/466 (46%), Gaps = 26/466 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L+ + GH G P V G ++DSR I E F A+ G DGHD++ A GA Sbjct: 5 SLSRLVADLGGHLRG--PDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSAARTAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKE 124 ++ + +P + V D G L L R AT I+A+TGS GKTT KE Sbjct: 63 AAALLERAV-----PEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGKTTVKE 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML L+ T A G+YNN +GVPLTL R+ + + ELG S G+IR LT VRP Sbjct: 118 MLAAILARHGATLATSGNYNNELGVPLTLCRLQRRHRYAVLELGASAPGQIRRLTQWVRP 177 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT PAHL F + +A K E+FE L G +N DD+F L + + Sbjct: 178 SVGVITNAGPAHLDGFGSVAGVARGKGELFETLPDDGIAVINVDDAFANLWQRLARP--- 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG + A+ + + +E++ G+ + V +G H Q + + Sbjct: 235 RRCITFGLDRRAEVR----ATTAADGQLELRWDGRVLPVRLPLLGRHN-QLNALASAATA 289 Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AI+A L P GR +R + G ++D++YNANPAS+ AAI VL++ Sbjct: 290 LALELPGAAIRAGLEAMRPVPGR-LCWREGI--GGARILDDTYNANPASLAAAIRVLAEN 346 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S RR VLGDM E+GE + H ++ + +++ G LA A + Sbjct: 347 SQ----RRWLVLGDMAELGETAGRLHRRAGQLARAGGVERLFVIGE--LAAASAAGFGLG 400 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + L + L V++K S S + + L + P Sbjct: 401 AECFDDREALVKALSGGLGPDIAVLIKGSRSAAMDIVADRLAADKP 446 >gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 5 str. 8401] gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401] gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 4343-70] gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-218] gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-272] gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-227] Length = 452 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] Length = 453 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 187/380 (49%), Gaps = 17/380 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R ++ F A+KG +D HD+ AV+ GA ++V+ ++ + P Sbjct: 24 IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRLL-----VDEPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R +S A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 LVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + T LVRP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264 A AK EIF GL G +N D + F + L KT++ F + DF Sbjct: 199 AQAKGEIFSGLPVDGVAIVNADSNDFPHWQVM---LNHKTVWRFSPQAACDIDFFASDVD 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + +V+ G H N L + + A ++ LS Sbjct: 256 VLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMSVGATLEAVKSGLSQLQAVP 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + AL++G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDE 368 Query: 385 SQSFHIDLAEVLSLYNISHV 404 + H + E + I V Sbjct: 369 APECHRQVGEAARVAGIDRV 388 >gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 196/393 (49%), Gaps = 17/393 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + IDSR++ + FF I G DGH+F AV+ GA VV + + L +PV Sbjct: 24 VGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGACAVVASAPL-----DLDVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA A R +++A +I ++GS GKTT KEML LS+ +T + NN Sbjct: 79 LVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTVKEMLAQVLSAAGRTAKNFRNLNNQ 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PL++ M D DF + ELG+S G++ L +++ P A++ I HL + + Sbjct: 139 IGLPLSILEMDGDEDFWVLELGISRPGDMDELGYILAPDAALLVNIGACHLEGLGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A KA + + + K G +N D + EL++ +S K + G AD+ + + Sbjct: 199 AEQKAVLLDHVRKGGFACVNAD--YPELMQ-ESTKRSPKLVTFSGTGARADYSCLRQENV 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ + + G H+A+N+ + + L T ALS + P R Sbjct: 256 AGAISYTFRVGHEELRCTVSA-GIHVAENLAAVVAMAMELGMTFATIESALSAYSPVAQR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGELS 385 + R G + ID++YNANP SM +I ++ GEG+R+ VLGDM E+G S Sbjct: 315 FVQTRV----GTWLFIDDTYNANPVSMARSIGEAKRL---GEGKRLVLVLGDMLELGRDS 367 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 H +L +++ SH + G + +KD L Sbjct: 368 VRAHRELGGLIADTGASHCFFQGRYAEDVKDGL 400 >gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/432 (30%), Positives = 208/432 (48%), Gaps = 22/432 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+S DSR+I + + G +DG F+ KGA +++ D ++SIP Sbjct: 27 ISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKGASAFLIDRDYEIK-NNISIPYI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL LA + R +I ITGS GKTTTK++L LS+ KT IG+ NN Sbjct: 86 RVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKDLLYEVLSTKYKTQKTIGNLNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T+ + D + + ELG G+I +++ P IA+IT I +HL N E I Sbjct: 146 IGVPKTILSLNEDTEIAVVELGTDKFGDISLTSNIALPDIAIITNIGDSHLHNLKSKEGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQ 265 AK EI EGL G N DD E +K + + + + I SFG + DF +++ Sbjct: 206 LKAKMEIVEGLSDDGIFIYNGDD---ETMKKEIDSYKVDQKIISFGLEDDNDFVVKEIP- 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + + G++ ++ +G H N L I +IL D + L P Sbjct: 262 -STPAKVSFSHDGETYDIPL--LGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANN 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + F ++D+SY +NP S+++ ++ + G +I VLGDM E+G+ Sbjct: 319 RS----SMIELDGFDVLDDSYKSNPQSLRSGLATCKLLD--GYNNKIVVLGDMLELGDKE 372 Query: 386 QSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRSIHVHYSETMDGLFLFIQSS 440 H ++ + +I + G +H+ AL + P+ H+++ D L ++S Sbjct: 373 DELHYEVGLDIDPKDIHYCLFFGDLSYHMYKGALNN-FPKDRAFHFTDK-DDLIDKLKSF 430 Query: 441 LVDGDVVVVKSS 452 + +V VK S Sbjct: 431 ITKSTLVFVKGS 442 >gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] Length = 453 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 219/455 (48%), Gaps = 42/455 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR+I F KG + DGH F+ A++ GAG D V+ + P+ Sbjct: 26 IQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKD-VSLPKDIEGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L AL LA A +IA+TGS GKTTTK+M+ L++ +KKT G+Y Sbjct: 85 WVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIECVLNTEFNVKKTQ---GNY 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ + + D I E+GMS EI L+ + P IAVIT I +H+ + Sbjct: 142 NNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNADF 258 E IA AK+EI GL+ GT + D+ ++ +AK ++G++ S S N Sbjct: 202 EGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCSVND-- 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDT 312 +V+ +G + + H +G H +N + + + L T Sbjct: 260 --------------QVETEGIAFTINHQQEYELPILGIHNMKNAAIAIAVGQELGLSYKT 305 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + R +R+ + T+I+++YNA+P SMKAAI LS ++ GR+I Sbjct: 306 IQHNIKRVKLTGMRMERHET---EQQVTVINDAYNASPTSMKAAIDTLSNMN----GRKI 358 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMD 431 VLGD+ E+G+ SQ H ++ L +I + G + + + H+ + Sbjct: 359 IVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLITFGSEATFIHNTGKSYVDEAHHFNDKE 418 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L ++ + D V++K S +++ L++ Sbjct: 419 KLISYMTHIVQPDDNVLIKGSRGMKLEEVVDALIK 453 >gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 469 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 152/485 (31%), Positives = 230/485 (47%), Gaps = 44/485 (9%) Query: 6 TFHDLLQAIQGHSI---GIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++ +A+ G + Q V+G+ DSR IA F A G DGH F AV Sbjct: 5 TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLFAPAAV 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSV 117 + GA L++V ++ L +P V DV+ AL +LA V AR+R+ ++A+TGS Sbjct: 65 EAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGDLRMVAVTGSN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK +L LS+ +T + + S+NN +G PLT+ ++ F + E+G S LGEI Sbjct: 120 GKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAEMGASGLGEITR 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P + ++ T+ AH F GIE K E+ + L T LN DD + Sbjct: 180 LIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRVSSMSD 239 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNM 296 K+ A + FG+ A + + + + L G V +G H N Sbjct: 240 KTEA----PVLWFGRDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEHHVTNA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKA 355 L L D D + AL R +R+R L T+I+++YNA+P SM A Sbjct: 296 LAAAAGAWALGVDGDAIVSALQTVQ----RAERWRMEVLGGNGVTIINDAYNASPDSMAA 351 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ L+QI E R +AVLG+M E+GE S+ H + + NI + + G Sbjct: 352 ALRTLAQIRGP-EQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPA---- 406 Query: 416 DALPRSIHVH--YSETMDGLFLFIQSS----------LVDGDVVVVKSSNSCGFYRLINL 463 R +H+ + DG +F + + L DGD+V+VKSSNS G L + Sbjct: 407 ----RRLHLEAIAQGSWDGESIFAEDAAEAREILDRILRDGDLVLVKSSNSAGLRFLGDE 462 Query: 464 LLEEF 468 L E++ Sbjct: 463 LGEKY 467 >gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia fergusonii ECD227] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 137/445 (30%), Positives = 219/445 (49%), Gaps = 25/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNANNSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 ++ H+ + E I V G HV++ + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHVISTTSG----VGEHFADKT-ALITHLKSLIAE 423 Query: 444 GDV--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 424 QQVITILVKGSRSAAMEEVVRALQE 448 >gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 536] gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia coli 536] gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 60-1] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] Length = 455 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/434 (29%), Positives = 202/434 (46%), Gaps = 17/434 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + ++ DSR I F ++G DGH+FI A+ GA + I Sbjct: 21 QTVITSVAFDSRKITDGGLFVPLEG-ERDGHEFIASAINNGASATLWKKGHPNK--PEDI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L A+ +LA + T++ ITGS GKTTTK+M+ LS + ++ Sbjct: 78 AVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSR 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI + L + G N D+ LL+ ++ L + +FG + Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAEKLD-QAKATFGFRDEDTVHATGF 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + V + + IG H N + + + + +LS F P Sbjct: 254 KSYMHHATFTVNDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPT 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + + + I YN+NP +++A ++ Q+ GRRIAVLGDM E+G+ Sbjct: 312 ANRMEWEKGDAGESIMSDI---YNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGK 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S H LA+ + I+ V+L G + L DAL P +H + E D + ++ Sbjct: 369 KSPELHAGLADTMDPQIINEVYLYGSEMKNLYDALQGKYEPEHLHYYTQEQTDRMIDDLK 428 Query: 439 SSLVDGDVVVVKSS 452 + + D+VV+K S Sbjct: 429 NDIKSDDIVVLKGS 442 >gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Acidithiobacillus caldus ATCC 51756] gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Acidithiobacillus caldus ATCC 51756] Length = 448 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 144/466 (30%), Positives = 221/466 (47%), Gaps = 27/466 (5%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +T ++ Q G + G P+ ++G+ D+R+ F A++GP +DGHDF+ A + Sbjct: 4 YTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V S G P V D L AL LA A R ++ A+TGS GKTT K Sbjct: 64 GAAAVLVQR---PSPG----PGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L L A G+ NNHIGVPLTLA + + + E+GM+H GEI LT + R Sbjct: 117 EILAAMLRQSGPCLATRGNLNNHIGVPLTLAELGPEHRHAVVEMGMNHAGEIAVLTRMAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+I PAH+ N I IA+AK EI EGL G +N DD + + ++ Sbjct: 177 PDLALINNAGPAHIENLGSIAAIAAAKGEILEGLSAHGIAVINGDDEYADYWAERAPG-- 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ F +W+ + ++++ ++ + G H N+L Sbjct: 235 --EVWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAATTAA 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +A+ P G R + +G ++D++YNANPAS++AA+ VL++ Sbjct: 293 LALNLGLDQIARAVEALTPAPG---RLQWREGKGGSRILDDTYNANPASVEAALRVLAEQ 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 GRR VLGDM E+G ++ H + I V F + +L R+ Sbjct: 350 P----GRRYLVLGDMAELGADAELHHQQMGGHARALGIDGV----FTLGSLSRTTSRAFG 401 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+ E + L + S L VV+VK S + R++ L E Sbjct: 402 PAGTHFVER-EALVDAVLSMLAPDAVVLVKGSRAAHMERVVAALTE 446 >gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 455 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/445 (30%), Positives = 212/445 (47%), Gaps = 26/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR F AI G H DGH FI +GA V+ + G P Sbjct: 28 VADIVTDSRRAKEGSLFAAICGEHVDGHRFIPQVYAQGALCVLCEKAPAEAQG----PYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ L AL +A R + ++ ITGSVGKT+TKEM+ LS + G++NN Sbjct: 84 LVESTLKALMAIAEFYRQQLDIKVVGITGSVGKTSTKEMIASVLSEKYRVLKTPGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLT+ ++ + + + E+G++H GE+ L+ + RP + VIT I HL + + Sbjct: 144 LGLPLTVFQLTEEDEVAVLEMGINHFGEMHRLSKIARPDVCVITNIGTCHLEFLGDRDGV 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRK 262 AK+EIF+ + G I LN DD LK GI+ + + + L+ Sbjct: 204 LRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVRGITPQFFGIEHACAIRATDIENAGLKG 263 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 K C E S V GYHM N L + L ++ + + Sbjct: 264 VK-CRIHDGTE------SFAVTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKL-- 314 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + G R+R L G T++D+ YNANP SMKA++ VL+ +P GR+IAVLGDM E+G Sbjct: 315 -QALGGRFR-ILEAGGITVVDDCYNANPMSMKASLGVLAD-AP---GRKIAVLGDMGELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQS 439 E Q H ++ + +I + G + + + R V +++++ + + Sbjct: 369 ENEQQLHGEVGRFAAGLDIPVFFCVGALCRYMAEEIRRLSPEKQVITADSVEEVLRLLPD 428 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 S+ GD V+VK+S++ F +++ L Sbjct: 429 SVQKGDTVLVKASHAMHFEKIVEAL 453 >gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 453 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 214/459 (46%), Gaps = 48/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI+ D+R++ E F A++G ++DGH F+ A++ GA VV+ + L + Sbjct: 24 RAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIAAVVDRSWESE--GLDL 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ V+D L A +A R + +IA+TGSVGKTTTKE++ L++ +Y Sbjct: 82 PLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKELIAAVLTTKGNVLKTQLNY 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP TL + + + E+GM GEI FLT + RP IAVIT + AH+ Sbjct: 142 NNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPTIAVITNVGTAHIGRLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK E+ + LN D+ AL + T + + + L K Sbjct: 202 EAIAQAKCELLAEMPNDSIAILNSDN-----------ALLMATAAKVWQGETLAYGLEKG 250 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 C E + + S++ ++ + G H A N L L + +L + LSV Sbjct: 251 NLCPEL----IDDRTISIDSINLPLPLPGRHNAVNYLAALAVAKVLGVSWEPLKGGLSVD 306 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P GR KRY A + ++DE+YNA SM AA+ +L+ R IAVLG M E Sbjct: 307 LPS-GRAKRYELAND---IVILDETYNAGLESMIAALKLLADTPGK---RHIAVLGTMKE 359 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVHY 426 +GE S FH + E N+ +++ +G + L D V Sbjct: 360 LGERSLEFHRQVGEKARELNLDALFILADFEEASAIATGAAGLPFVELGDI----TQVDA 415 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 E M +Q + GD ++ K+S+S R++ LL+ Sbjct: 416 REMMAK---RLQEFVKAGDRILFKASHSVELNRVVQLLV 451 >gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] Length = 455 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 219/467 (46%), Gaps = 47/467 (10%) Query: 19 IGIVPQGFV--------NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +G+ PQ V G++ D+R++ E F A+ G +DGH+F AV+KGA +V Sbjct: 15 LGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVEKGAIATIV 74 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + + ++++P V D L A L R + ++AITGSVGKTTTKE++ AL Sbjct: 75 KKGVFSK--TVTLPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTTKELVAAAL 132 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S + +YNN IGVP TL + + D+ + E+GM L EI LT + +P +A+IT Sbjct: 133 SQFGTVFKTRANYNNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIAKPTVALIT 192 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH+ IA AK E+ L GT LN+DD+ + T F Sbjct: 193 NVGTAHIGRLGSRAAIAQAKCELLRELPTDGTAVLNHDDARL-----------MSTAARF 241 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIV 303 + L +V+ Q +++ G+ G H A N+L + + Sbjct: 242 WSGTQITYGLEGG---------DVRGQIAGSDIIVDGVKIPLPLPGRHNALNLLSAIATL 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + SV P GR +R++ + L+DE+YNA +A I+ L + Sbjct: 293 KALNLNWQQLSQGFSVPMPA-GRSQRHQLPND---ILLLDETYNAG---AEATIAALELL 345 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRS 421 + R IAVLG M E+G S H + + ++ + + + A+ D+ RS Sbjct: 346 ADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLILADPIEAKAMADS-ARS 404 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + D L +++ L GD ++ K+S S ++++ LL++F Sbjct: 405 VPSQQFDNHDQLAQCLKAQLQAGDRLLFKASRSVEMDKVVDQLLKDF 451 >gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 301] gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301] gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2002017] gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2747-71] gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-671] gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2930-71] gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-304] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPALVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophobacter fumaroxidans MPOB] gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 463 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 227/470 (48%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 WT ++ A++G + P V+ IS D+RS+ + F A+ G +DGHDFI AV+KG Sbjct: 3 WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKG 62 Query: 65 AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +VVV + ++ + S+ V VDD L AL +LA R R + ITGS GKT+TK Sbjct: 63 AAVVVVASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L L G+ NN IGVPLTL M + + E+G++ GE+ L + Sbjct: 123 ELLAAILEHRHGILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMARLVEIAG 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT I PAHL ++ I K +++ L+ G +N DD + L+A S L Sbjct: 183 PTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDD---QRLRAYSKRLA 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +T+ + A ++ + E S + L +++ VV +G H +N L Sbjct: 240 ARTVTCSVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAA 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + L+ + P G+R + + LID++YNANP SM AA+ Sbjct: 300 AWAMGEPGEAISAGLAAYRPV---GQRMQIRHMEDGRVLIDDTYNANPESMLAAVRAALA 356 Query: 363 ISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK------ 415 + G+ IAVLG+M E+G S + H +L + +S + G LA + Sbjct: 357 VC---RGKPCIAVLGEMRELGADSAALHRELGRRIGAMGLSGLITLGE--LAARIGEGAV 411 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +A + ++++ D + +++ +D ++VK S R++ +L Sbjct: 412 EAGMKPAACRHAKSHDQVVEWLRERKIDASWILVKGSRGMTMERVVEGML 461 >gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] Length = 468 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 216/456 (47%), Gaps = 19/456 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +++QA G IG + V+G+S DSRS+ + F A+KG +DGH+FI A+ K Sbjct: 1 MLSIDEIIQATGGTLIGSGGK-MVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAK 59 Query: 64 GAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V D + A + + V + L AL LA R + +I ITGS GKTTT Sbjct: 60 GVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L G+ NN IG+PL L RM + + E+GMS GEI L + Sbjct: 120 KEMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT AHL++ +E +A AK E+F+ L+ G N DD L A Sbjct: 180 EPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDPLISRLPT---AA 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + SFG + A+ K E ++L + V G H N L Sbjct: 237 GVSRL-SFGL-RGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNIYNALAAAA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D T L F P + KR+ G LID+SYNANPAS+ AA+ L Sbjct: 295 AAHAIGLDHQTIRAGLEEFTPYD---KRFHVE-QVGDIVLIDDSYNANPASIAAALVTLK 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DA 417 I + R IAVLGDM E+G + + H ++ +L+ + +++ G + + D Sbjct: 351 DIRQ--QNRAIAVLGDMLELGSGAPAAHREVG-LLAATCVERLYVMGEYAETVAAGAVDG 407 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + H++ + + + ++ + GD ++VK S Sbjct: 408 GMGADHIYVAGSHGEIVEDLRRKVTKGDNILVKGSR 443 >gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Lactobacillus crispatus ST1] gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus ST1] Length = 455 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/434 (29%), Positives = 201/434 (46%), Gaps = 17/434 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + ++ DSR I F ++G DGH+FI A+ GA + I Sbjct: 21 QTVITSVAFDSRKITDGGLFVPLEG-ERDGHEFIASAINNGASATLWKKGHPNK--PEDI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L A+ +LA + T++ ITGS GKTTTK+M+ LS + ++ Sbjct: 78 AVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSR 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI + L + G N D+ LL+ ++ L + +FG + Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAEKLD-QAKATFGFRDEDTVHATGF 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + V + + IG H N + + + + +LS F P Sbjct: 254 KSYMHHATFTVNDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPT 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + + + I YN+NP +++A ++ Q+ GRRIAVLGDM E+G+ Sbjct: 312 ANRMEWEKGDAGESIMSDI---YNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGK 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S H L + L I+ V+L G + L DAL P +H + E D + ++ Sbjct: 369 NSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHLHYYTQEQTDRMIDDLK 428 Query: 439 SSLVDGDVVVVKSS 452 + + D+VV+K S Sbjct: 429 NDIKSDDIVVLKGS 442 >gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] Length = 469 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 227/471 (48%), Gaps = 28/471 (5%) Query: 8 HDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +++QA QG +V QG G I IDSR P F AI G DGH F+ A Q+ Sbjct: 7 EEVVQATQGQ---LVCQGMDGGEITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQE 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G +V+ + + + VD+ L +A R + ITGSVGKTTT+ Sbjct: 64 GCRFFLVSNESYITDRFKDSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTR 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L+S T +YNN GVPLTL R+ + E+GMS GEI +L ++VR Sbjct: 124 DMVYSVLASKFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEIEYLANIVR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHA 241 P I +IT I +H+ + E I AK EI G ++T ++ +N DDS+ EL + ++ Sbjct: 184 PKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERYRNSQ 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +YSFG D + + +++ + ++ E +G H +N + + Sbjct: 244 KDSYKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAI 303 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I ++ K L F E R + + FTLI++ YNA+P SM AA+ VL Sbjct: 304 LAGHITGMTMEEISKGLLDFVATENR----QDIIKTDRFTLINDVYNASPDSMIAALKVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLA 413 + + RR+A+LGD EMG+ ++ H ID A+++ + ++ V A Sbjct: 360 ---KLYKDRRRVAILGDCLEMGQYAEEGHRRVGYQSIDKADIIITAGHAAKFIG---VEA 413 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ S H+ ET + L + + DGDV+++K+S F ++ +L Sbjct: 414 MERGFDLSRVFHF-ETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVL 463 >gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] Length = 480 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 27/467 (5%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 ++ + F +SIDSR + + F A+ DGH F+ A + GA ++ A Sbjct: 22 RTVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEA 81 Query: 77 SIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 SL S+P V D + AL LA + R ++ ITGSVGKT+T+ ML L + Sbjct: 82 EFASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQARY 141 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 ++NN +G+PL++ + D F + E+G G+I L + +P + VIT+I Sbjct: 142 SGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIARLCEIAQPEMGVITSIG 201 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL+ F +A +KAE+FE L + G F D F +LK K+H +T+ + G+ Sbjct: 202 LAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLKDKAHC---RTV-TVGED 257 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADV 310 D+ +++ + + + Q + V H QN + + + V I A++ Sbjct: 258 TVNDWTIQQVRAVRDGYRFVMDGQDYFIRTV----ARHFVQNAGLAIAVGREVGISNAEI 313 Query: 311 DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 L+ + P G RC+L T++D+ YNA+P++M AA+ L ++ E Sbjct: 314 ---ADQLAKWQPVSG-----RCSLIPHPSLTILDDCYNASPSAMAAALRTLEELGEREET 365 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHY-- 426 R IAVLGDM E+GE+S+ H + ++ +I + G H L K A ++ +H Sbjct: 366 RTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQHADLIAKAAKATNLSLHRLA 425 Query: 427 -SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 + ++ ++ ++ + +GDV++VK S S G R++ L PA++ Sbjct: 426 VARDVEMAWMLLECWIEEGDVILVKGSRSMGLERIVENLRSFQPAVR 472 >gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5] gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5] Length = 445 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 137/478 (28%), Positives = 227/478 (47%), Gaps = 62/478 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + ++G +G P V SIDSR+I E F +KG +D H+FI A +KGA Sbjct: 4 TSQTLAKILKGSLVG-SPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ ++ G I V L +L ++A R K +I + GS GKTTTKE+ Sbjct: 63 VGVISEREVDVPPGKFLIKV---RSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKEL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ LS K Y G+ N+ +G+PL +A ++ DF + E G S GEI+ L + +PH Sbjct: 120 LSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKNLIEITKPH 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +ITT+ HL F +E + AE +F D+F+ ++ Sbjct: 180 VRLITTLGEEHLEGFGSLEGVIWGNAE----------MFCRISDNFYAVIP--------- 220 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH-------------- 291 GK + F L K E+ +LQ +++EV G+ + Sbjct: 221 -----GKFLDTLFFLPKKISFGERG----ELQAQNVEVSEKGVSFEVEGEKFFISVPSLG 271 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + +N+L ++ +L + +AL F P EGR K + N F LID++YNANP Sbjct: 272 LVENILACFCVLKVLGFTLKEFKEALKEFSPVEGRMKVF----NLKNFILIDDTYNANPV 327 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 S++ AI + ++ +LGDM E+GE S+ H ++ +L+ + + L+ F+ Sbjct: 328 SLRNAIKSVGAFKRD----KVFILGDMLELGEHSKELHEEVGRLLN--TVKGIRLAIFYG 381 Query: 412 LALK---DALPRSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLL 464 +K D+ +S Y++T + + FI+ +L +G V++K S +++ L Sbjct: 382 DEMKYAYDSFNKS-KKFYAKTKEEMLQFIEENLKEFEGCAVLIKGSRGMKLEEVVDFL 438 >gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] Length = 454 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 23/449 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ +S D+R+I F A+ G +D H+F AV GAG ++V + +++P Sbjct: 23 LIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRL-----DVNVPQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL + A K +AITGS GKTT KEM+ L K G++NN Sbjct: 78 IVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK- 262 + AK EI++GL G +N D + +AK L K + +F +S +ADF Sbjct: 198 VKQAKGEIYQGLSAGGIAIVNLDSNG----EAKWDEVLADKKVITFSQSNTDADFFASNI 253 Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 E S+ + + + +E+ IG H N + I + A ++ L Sbjct: 254 VLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK-- 311 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G+ AL++ LID+SYNA+ +MKAA+ +L+ G+R +LG+M E Sbjct: 312 HLNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439 +GE S + H + E + HV G + D L + IH + E ++ + + Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQGIHFETHQEMIEYIKQHLDQ 425 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ + ++VK +N + + L E + Sbjct: 426 AVPENHTILVKGANGARMFEVAAALKEYY 454 >gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus torques L2-14] Length = 461 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 24/449 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++IDSR + F AIKG DGH FI ++ GA + D+ G + P Sbjct: 28 VSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVMEAGALCSLSEQDL----GDVDYPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL LA R ++ ITGSVGKT+TKEM+ LS G++NN Sbjct: 84 RVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTSTKEMIASVLSEKYNVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G+SH G+++ L + RP + VIT I AHL N + I Sbjct: 144 IGLPLTVFNIREEHEVAVLEMGISHFGDMKPLAKIARPDVCVITNIGYAHLENLGTRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+ + + + G++ N DD + LK+ + G +Y FG + + F + ++ Sbjct: 204 LKEKSSMTDYMNPKGSVIFNGDD---DKLKSYTSRDGRTPVY-FGLTSSCPFHVENIERK 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + S H I G HM N L + + L D + + + P G Sbjct: 260 GLKGTYAEFVTPTSRFHAHISIPGDHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAG 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +T+ID+ YNANPASMK+++ VL+ + + R++A+LGDM E+G Sbjct: 320 RNN----LIEAKHYTIIDDCYNANPASMKSSLDVLA----YADTRKVAILGDMGELGADE 371 Query: 386 QSFHIDLAEVLSLYNISHV----WLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQ 438 + H ++ + N + LS A K+ A +++ V + +T + + ++ Sbjct: 372 LAMHREVGAYAAFKNTDVLVCIGALSKDMAEAAKETVLATEKNMKVFHFDTKEDFYQNMR 431 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D D +++K+S+ F ++ L EE Sbjct: 432 QILKDNDTILIKASHFMEFPEIVKKLSEE 460 >gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella boydii ATCC 9905] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G + A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHTISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli AA86] gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 216/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANNDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 212/439 (48%), Gaps = 25/439 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N I+ D+R+I + F A+KG +DGH F A+ KGA +++N + + + IP Sbjct: 25 LINEINTDTRNITENDIFLALKGDKFDGHLFAEKAIDKGAIALILNHKISVN-STKKIPQ 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L A ++A R + K II ITGSVGKTTTKE+++ L K + +YNN Sbjct: 84 IIVKDTLIAYQEIANWWRNKVKIPIIGITGSVGKTTTKELISAVLGVYGKVHKTQANYNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP TL + D+ + E+ M GEI L+ + P I +IT + AH+ E Sbjct: 144 EIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQIACPTIGIITNVGTAHIGRLGSREA 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK E+ + LN+DD L++ + KTI ++G + D + Sbjct: 204 IAEAKCELLAEMPTDSIAILNHDDQ--RLMETAAKVWQGKTI-TYG-LEGGDITGK---- 255 Query: 266 CSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 +E Q L+ K M+ G H A N L L + L D I+ ++V P + Sbjct: 256 -----VLENQILRVKGMDFPLPLPGRHNALNYLAALAVTQQLNLDWHPLIQGVTVNLP-Q 309 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR ++Y + L+DE+YNA SMKAA+ +L R +AVLG M E+G+ Sbjct: 310 GRSQQYSL---ENDIILLDETYNAGLESMKAALQLLKDTPGK---RHLAVLGTMKELGDA 363 Query: 385 SQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S H ++ E I ++ + A+ + +++ T + L + + Sbjct: 364 SAQLHQEVGETAETLGIDGLYILVDDPEAQAIAQGV-KTVETECFPTHEQLIQRLTEIIK 422 Query: 443 DGDVVVVKSSNSCGFYRLI 461 GD ++ K+SNS G R++ Sbjct: 423 PGDRILFKASNSVGLNRVV 441 >gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIYV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Arthrospira platensis NIES-39] Length = 468 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 228/495 (46%), Gaps = 72/495 (14%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ I G F V GI+ D+R++ E F A+ G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ KGA VV+ + S P+ V D L A LA + R R +I +TGSV Sbjct: 61 AAAIAKGALCAVVSREFAVS--HPEFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ L+ Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GY 290 + TI ++G E ++ +L G V GI G Sbjct: 237 ATQVWAGTTI-TYGL---------------EGGILQGELLGHETIRV-EGIDLPLPLPGS 279 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHP---------KEGRGKRYRCALNQGFFTL 341 H A N L L ++L A I A ++ P +GR KRY A + L Sbjct: 280 HNASNFLAAL---AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADD---IML 333 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +DE+YNA S AA+ +L++ + R IAVLG M E+GE S FH + N+ Sbjct: 334 LDETYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNL 390 Query: 402 SHVWL--------------SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 +++ G + ++D A P++ + +D + F++ GD Sbjct: 391 DGLFILADLAEAQAMAEGAMGVDFIDIQDLASPQA----HQLMIDKVLAFLKP----GDR 442 Query: 447 VVVKSSNSCGFYRLI 461 V+ K+SNS G R++ Sbjct: 443 VLFKASNSVGMNRVV 457 >gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] Length = 464 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 220/463 (47%), Gaps = 46/463 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S D+R + FFA+KG ++D HD++ AV++G VVV + + L +P Sbjct: 25 VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDVDVPQLIVP-- 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 D AL +LA R++ IAITGS GKTT KEM L + + + G+ Sbjct: 83 ---DTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVAQDPDAVLFTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H GEI + LV+P +A++ +A AHL F Sbjct: 140 FNNDIGVPLTLLRLESKHKFAVIELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-R 261 +E +A AK EI++GL + G + Y+ H++ + Y + + NAD +L Sbjct: 200 VEGVAQAKGEIYQGLSENGIAIMEYE-----------HSVRYQKKYWYEQIGNADTRLFS 248 Query: 262 KWKQCSEQSWMEVQLQGK----SMEVVHHG--------IGYHMAQNMLMTLGIVSILTAD 309 + S+ E++L ++ + G +G H N + + L Sbjct: 249 VMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKINLPYLGLHNVSNAVAAASLALCLGVS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ L +GR N L+D++YNAN +S+K+AI VL Q + + Sbjct: 309 LEQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLKSAIDVLRQ---YDKF 362 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-- 427 RI +GDM E+G S S H +A+ + N+ V G + A VH+S Sbjct: 363 FRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISSACD---GVHFSDK 419 Query: 428 -ETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468 E ++ + IQ L VV +VK + +INL+ ++F Sbjct: 420 TELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 462 >gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] Length = 452 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 220/444 (49%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A + GAG ++V+ + ++P Sbjct: 24 LDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVSRPL-----DTNLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFTGLSANGIAIMNADNN--DWLNWQS-IIGDRKVWRFSPNAANSDFSATNVHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 S + +Q S++V+ G H N L +S+ AIKA L Sbjct: 256 TSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA-ALSMAVGATHEAIKAGLKDLQAVP 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + A NQ L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G Sbjct: 315 GRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S++ H+ + I V +G A+ DA + H+++ L +++ + + Sbjct: 368 SEACHVQVGVAAKAAGIDRVLSTGKLSQAISDA--SGVGEHFADK-SALAAHLKALIAEH 424 Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 425 QVMTILVKGSRSAAMEEVVRALQE 448 >gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 456 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 189/386 (48%), Gaps = 22/386 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++IDSR + P + F AI G DGHD++ A+++GAG +V + S ++P Sbjct: 28 VSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQV-----SSALPQL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL R ++ ITGS GKTT K ML LS A G+ NN Sbjct: 83 IVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAGSVVATKGNQNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTLA + D ++ + ELG G+I L + RP+IA++ +APAHL+NF ++ I Sbjct: 143 LGVPLTLADLNNDTEYAVLELGAGKPGDIARLCEMARPNIAILLNVAPAHLANFGSLDAI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKT-IYSFGKSKNADFQL--RK 262 + K + + L G +N DD F+ H T +FG + AD+Q + Sbjct: 203 SKTKGALLDDLPADGLAVINADDPRVFDW-----HVRASPTRCLTFGMNCKADYQAIDLQ 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 K S ++ +Q + +EV + G N L + L T + L+ P Sbjct: 258 LKGFSGSDFV-LQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGISAITIREGLAAVKP 316 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GRG A+ +LID++YNANP +++AAI VL+ P GRR VLG M E+G Sbjct: 317 APGRGG---VAVLSPDASLIDDTYNANPVAVRAAIDVLAS-EP---GRRRLVLGAMLELG 369 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 + H +L + +W G Sbjct: 370 LDEEKLHAELGVYAREAGLDELWAVG 395 >gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrospira platensis str. Paraca] Length = 465 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 155/496 (31%), Positives = 228/496 (45%), Gaps = 72/496 (14%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ I G F V GI+ D+R++ E F A+ G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ KGA VV+ + S P+ V D L A LA + R R +I +TGSV Sbjct: 61 AAAIAKGALCAVVSREFAVS--HPEFPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ L+ Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNR--RLMST 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------GY 290 + TI ++G E ++ +L G V GI G Sbjct: 237 ATQVWAGTTI-TYGL---------------EGGILQGELLGHETIRV-EGIDLPLPLPGS 279 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHP---------KEGRGKRYRCALNQGFFTL 341 H A N L L ++L A I A ++ P +GR KRY A + L Sbjct: 280 HNASNFLAAL---AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADD---IML 333 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +DE+YNA S AA+ +L++ + R IAVLG M E+GE S FH + N+ Sbjct: 334 LDETYNAGLESTLAALKLLAETPGN---RHIAVLGTMKELGERSLEFHQQVGAETERLNL 390 Query: 402 SHVWL--------------SGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 +++ G + ++D A P++ + +D + F++ GD Sbjct: 391 DGLFILADLAEAQAMAEGAVGVDFIDIQDLASPQA----HQLMIDKVLAFLKP----GDR 442 Query: 447 VVVKSSNSCGFYRLIN 462 V+ K+SNS G R++ Sbjct: 443 VLFKASNSVGMNRVVE 458 >gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] Length = 428 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 188/369 (50%), Gaps = 24/369 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I F A+KG ++D + F A++KGA VV++ S + V+ Sbjct: 17 VSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDN----SKFYIDERTLLVE 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R TII +TGS GKTTTKE++ L T A IG+ NNHIGV Sbjct: 73 DSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R D + GI E+G +H EI FL + +P IT AHL F G+E + Sbjct: 133 PLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYITNFGKAHLEGFGGVEGVIKG 192 Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267 K+E++ ++ T+F+N DD L K KS+ L T YSF ++ AD + K Sbjct: 193 KSELYNYIKNNNKTVFINADDP---LQKEKSNNL---TTYSFSTNETEADVTISKV---- 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + VQ+ + H IG + A N+ + I +A+ + P+ R Sbjct: 243 -VANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISDKLIKEAIENYIPENNRS 301 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N+ +I ++YNANP+SM+AAI+ Q+ + +IA+LGDM E+GE S Sbjct: 302 QLIEKNGNK----IILDAYNANPSSMQAAITNFIQLE---DNSKIAILGDMFELGEESLL 354 Query: 388 FHIDLAEVL 396 H + E L Sbjct: 355 EHKKIIEFL 363 >gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 472 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 228/459 (49%), Gaps = 36/459 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 ++ ++ D+R+++ E F AIKG DG + A+ GA VV +D ++ S + P Sbjct: 30 ISSLTADTRTVSGGEVFAAIKGARVDGAELAGAALSAGA-RAVVTSDPSTAVASGADPAR 88 Query: 85 VFGVDDVLGALNKLAVAARLRSKA------TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V VDDV A+ LA A R++A ++A+TGSVGKTT K++L + S A Sbjct: 89 VIVVDDVEKAIGALARANLQRARAEGNPALKVVAVTGSVGKTTVKDLLASLVESRGPVIA 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 GS+NN +G+P+T+ R + E+G H+G I +LT + P + + +A AHL Sbjct: 149 PPGSFNNELGLPITVLRTDAGTATLVLEMGADHVGNIDYLTSIAPPDASAVLIVARAHLG 208 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F GI+ + AK+E+ G + G + LN DD + +H + +F D Sbjct: 209 EFGGIDNVGRAKSELVTGTREGGVVVLNADDPRVAAMAGLAHG----PVLTFSARGAGDV 264 Query: 259 QLRKWKQCSE--QSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVD 311 R ++ S+ V +G++ + +V HH A + +LG I TA + Sbjct: 265 AARNIDVGADGRASFTLVTPEGEADVKLRLVGEHHVANALAAAALAHSLG---IPTAQIA 321 Query: 312 TAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + A+ P +R + G T+ID+SYNANP SM+A ++ L ++ G GR Sbjct: 322 STLSAVGAASP-------HRMDVFEAGGATVIDDSYNANPDSMRAGLAALERL---GRGR 371 Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSE 428 R +AVLG+M E+GE S H + + + ++ + G L A + ++ Sbjct: 372 RKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAVGEEARPLASAAEAEGVDATWAA 431 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +G + ++L GDVV+VK SN G +++ + L EE Sbjct: 432 GPEGALRELDAALAAGDVVLVKGSNGSGVWKVADSLREE 470 >gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] Length = 463 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 218/462 (47%), Gaps = 45/462 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S D+R + FFA+KG ++D HD++ AV++G VVV + + L +P Sbjct: 25 VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDVDVPQLIVP-- 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 D AL +LA R++ IAITGS GKTT KEM L + + + G+ Sbjct: 83 ---DTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVVQDPDAVLFTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R F + ELG +H GEI + LV+P +A++ +A AHL F Sbjct: 140 FNNDIGVPLTLLRFEPKHQFAVIELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYSFG-KSKNADFQL 260 IE +A AK EI++GL G + Y+ S L K H +G F + K +D+ Sbjct: 200 IEGVAQAKGEIYQGLNGKGIAIMEYEHSV--LWKKYWHEQIGDAETRLFSTQGKKSDYYA 257 Query: 261 RKWK----------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 ++ + C+E +E+ L +G H N + + L + Sbjct: 258 QEIRLTETGSQFKLCCTEHGEIEINLP---------YLGLHNVSNAVAAASLALCLGVSL 308 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L +GR N L+D++YNAN +S+K+AI VL Q + + Sbjct: 309 EQIKAGLEKKSYVKGRLFPIEPCPN---LLLLDDTYNANVSSLKSAIDVLRQ---YDKFF 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--- 427 RI +GDM E+G S S H +A+ + N+ V G + DA VH+S Sbjct: 363 RIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISDACD---GVHFSDKT 419 Query: 428 ETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRLINLLLEEF 468 E ++ + IQ L VV +VK + +INL+ ++F Sbjct: 420 ELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKF 461 >gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei 53G] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A ++ L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLNAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 476 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 20/392 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W+ + QG + P ++GI+ DSR + P++ + I G DGHDFI A G Sbjct: 18 WSVEAVAAITQGKVVH--PGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANG 75 Query: 65 AGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A V+ ++D + A G + + GV D A+ LA A R R ++A+TGS GKTTTK Sbjct: 76 AAAVLCDSDHLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTK 135 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS +T G++NN +GVPLTL ++ + + E+GM+H GEI VR Sbjct: 136 DLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGEVR 195 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI VIT I AHL N E AK EIF +EK +N DD + + A+ + Sbjct: 196 PHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRIVARDY--- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + +AD + ++ + S + + G GI H N L+ + I Sbjct: 253 -RVVRVGIREPDADLKAEAIRE--DLSGLYFEADGVPFHFKWPGI--HNVYNCLIAIWIG 307 Query: 304 SILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D D AI+A L F P G R + A G ++++YNANP SM+AA+ + Sbjct: 308 RYYHLD-DAAIQAGLDAFVPS---GNRMQMA-EVGGLRFVNDAYNANPESMRAAMDTVCA 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 ++ EGR+IAVLGDM E+GE ++++H + E Sbjct: 363 VA---EGRKIAVLGDMLEIGENAEAWHRAVGE 391 >gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 214/448 (47%), Gaps = 33/448 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 +N I DSR I + F ++G DGH+FI A GA VA+ +I Sbjct: 26 INAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGA---------VATFSEKNITSD 75 Query: 84 -PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V D L A LA + + +IA+TGS GKTTTK+M+ L++ KTY G+ Sbjct: 76 YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKDMIATILATTYKTYKTQGN 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNN IG+P T+ MP D + + E+G HLG+I L++L PHIAV+T I AHL F Sbjct: 136 YNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHPHIAVVTLIGEAHLEFFGS 195 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E+IA K +I +G++ G + D L K + + FG AD + Sbjct: 196 REKIAEGKMQITQGMDGHGILIAPADKIINSFLPEK------QKVIRFG----ADEDIFV 245 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++++ + E+ G + A N ++ + +L + I AL+ + Sbjct: 246 TELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNL 305 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+G Sbjct: 306 TRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELG 362 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HY---SETMDGLFLF 436 + + H + L I ++L G + AL D + + V +Y ++ +D L Sbjct: 363 DSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQ 422 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 IQ L D +++K SNS +++ L Sbjct: 423 IQKVLGPNDQILLKGSNSMKLAQVVECL 450 >gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] Length = 451 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 191/383 (49%), Gaps = 28/383 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88 +S DSR + E F A++GP++ G DF+ A KG G V +VA +P V Sbjct: 33 VSTDSRRLQAGELFIALRGPNFRGEDFL--AAAKGQGAVAA---IVAEYQPDADLPQIVV 87 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL LA R RS+A AITGS GKT+TKE+L L + +T A +G+ NN IG Sbjct: 88 ADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLGNLNNDIG 147 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + + E+G +H GEI L L RP +A+IT +APAHL+ F +E + + Sbjct: 148 VPLTLLRLRDEDRYAVIEMGANHPGEIAALVALARPDVALITNVAPAHLAGFGTLEGVIA 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK+EI+ G I LN D + + H + Y+F S N D + ++ Sbjct: 208 AKSEIYA--HSDGAIVLNLDLPAAARWQDQFHD---RPQYTF--SLNIDADVTAHDLAAD 260 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFHPKEG 325 S +++ G V +G H N L + + A + + L++ + Sbjct: 261 GSRFVLRVDGSDYPVAWQLVGRHNIMNALAACTAARLAGVSGAQMQATLTGLALHQSR-- 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 A+ G T+ D++YNANPAS KAAI VL+ +P + + G M E+G Sbjct: 319 -----LAAIRVGAHTIYDDTYNANPASFKAAIDVLA-AAPQS----LIIAGAMGELGAEE 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 + H D+A + IS W G Sbjct: 369 VALHHDVATYAATRGISAFWSVG 391 >gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI39] gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI39] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L+ T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFTDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 462 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 224/469 (47%), Gaps = 29/469 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHAL 242 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK---- 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTL 300 +Y G K DF +E ++ QGK+ + G H N L + Sbjct: 242 ----VYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAI 297 Query: 301 G---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ I D+ T IK L + R +G FT+I++ YNA+P SMKAAI Sbjct: 298 ACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 V+ I R I +LG M E+G H +++E I ++ G A ++ Sbjct: 351 DVMKNIKGK---RTITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREG 407 Query: 418 LPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 408 FEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKEL 456 >gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] Length = 454 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 23/449 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ +S D+R+I F A+ G +D H+F AV GAG ++V + +++P Sbjct: 23 LIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRL-----DVNVPQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL + A K +AITGS GKTT KEM+ L K G++NN Sbjct: 78 IVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK- 262 + AK EI++GL G +N D + +AK L K + +F +S +ADF Sbjct: 198 VKQAKGEIYQGLSAGGIAIVNLDSNG----EAKWDEVLADKKVITFSQSNTDADFFASNI 253 Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 E S+ + + + +E+ IG H N + I + A ++ L Sbjct: 254 VLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK-- 311 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G+ AL++ LID+SYNA+ +MKAA+ +L+ G+R +LG+M E Sbjct: 312 HLNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439 +GE S + H + E + HV G + D L + IH + E ++ + + Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISD-LCQGIHFETHQEMIEYIKQHLDQ 425 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ + ++VK +N + + L E + Sbjct: 426 AVPENHTILVKGANGARMFEVAAALKEYY 454 >gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 462 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 134/471 (28%), Positives = 228/471 (48%), Gaps = 33/471 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +V +++ S G + + V++ AL LA R + ++AITGS GKT+TK+ Sbjct: 66 LCIV-SEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L+ K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 125 LVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHA 241 IA+IT I +H+ N E I AK EI + K + +N DD S FE K K Sbjct: 185 DIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFK--- 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLM 298 +Y G K DF +E ++ QGK+ G+ G H N L Sbjct: 242 -----VYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC-FGVNVPGKHNVLNSLT 295 Query: 299 TLG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ I D+ T IK L + R +G FT+I++ YNA+P SMKA Sbjct: 296 AIACGRVLDINYRDIQTGIKNL------KATSMRLDIVKEKG-FTIINDCYNASPDSMKA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI V+ I R IA+LG M E+G H +++E I ++ G A + Sbjct: 349 AIDVMKNIKGK---RTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYR 405 Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Y ++ +I++ + DGD++++K+S + ++ L Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKEL 456 >gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] Length = 453 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 216/476 (45%), Gaps = 49/476 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q QG IG +S D+R I Q F A+ G +D HDF AV GA ++ Sbjct: 9 LAQLTQGQLIG--DDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALL 66 Query: 70 VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V +L +PV V D AL +L R + +AITGS GKTT KEM+ Sbjct: 67 VER-------ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L K G++NN IG PLTL R + DF + ELG +H+GEI + T LVRP +A Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 ++ +A AHL F I+ + AK EI++GL G +N D E + L K + Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236 Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296 +F S+ ADF + + QGK+ V+H IG H N Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANA 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + I A + L P +GR + + N LID+SYNA+ +MKAA Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + +L + G+R VLG M E+G S + H + E + N HV G + Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+S+ + L +I+ +L + + V+VK +NS G ++ L E + Sbjct: 401 LCGGK---HFSDHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452 >gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 57-2] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A +Q L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAESQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2] gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2] Length = 486 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 141/428 (32%), Positives = 206/428 (48%), Gaps = 18/428 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W D+ +A+ V + +G+S DSR+I Q+ F A++G +DGH FI V++G Sbjct: 7 WRVADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV F VD+ L AL LA RLR+ ++AITGS GKT+T++ Sbjct: 67 VRGFVVKKGQKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRK 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M T G+ NN IG+PLTL + +D ++ + E+GM+H GEI L + P Sbjct: 127 MTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLDHEWAVVEMGMNHGGEIHRLGSIALP 186 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LG 243 I VIT + HL +E +A AKAE+ + G+ LN DD F + A A Sbjct: 187 DIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVHGSAVLNLDDPRFPIFSAAVRANTA 246 Query: 244 IKTIYSFGKSK-NADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I+ I F + N D E+ + V + EV H M N L Sbjct: 247 IENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVFLHTPARFMVSNALAAA 306 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAIS 358 G +D + L F P+ G R L GF T+ID++YNANP S+ AA+ Sbjct: 307 GAALAAGISMDVIKQGLEAFEPEPG-----RMHLEPGFNHTTIIDDTYNANPGSVGAALE 361 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVL--A 413 L +++ +G G IAVLGDM E+G ++ FH ++ + + IS ++ G HV+ A Sbjct: 362 TLERVTQNGVG--IAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGPMADHVIHGA 419 Query: 414 LKDALPRS 421 +K P S Sbjct: 420 VKAGFPGS 427 >gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 459 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 213/445 (47%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR + P F IKG DGH FI A+Q GA + D +P Sbjct: 26 VTSVQFDSRQLTPGSLFVPIKG-QRDGHQFIEQAIQAGAVATLWAKDH-EDTRPADLPSI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL KLA + ++AITGS GKTTTK+M L++ ++NN Sbjct: 84 EVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLATEFNVVKTEANFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + ELGM G++ FL+ LV+P IAVIT I AH+ F + I Sbjct: 144 IGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL++ G + D+ LL ++ A+ ++ FG D Sbjct: 204 ADAKMEITDGLKEDGCFIYDGDEP---LLAERAKAVDVEQ-RMFGMKNENDVFASDVAGT 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ + L + +EV IG + +N L + + V + +AL+ F+ + R Sbjct: 260 DTETSFKTNLDPE-VEVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNR 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + QG L D YN+NP + KA ++ + GRR VLGDM E+GE + Sbjct: 319 TEWLKG--RQGERILSD-VYNSNPTAAKAVLNSFAHTKKT--GRRFVVLGDMLELGENAD 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439 H LA+ L+ V+L G H+ AL L ++H++ + + L +Q Sbjct: 374 QMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQ 433 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 + D V++K+S+ +++ L Sbjct: 434 MIKADDCVLLKASHGIHLEKVVEQL 458 >gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 211/449 (46%), Gaps = 35/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+ + F A++G +DGH+++ A GA +V+ + L +P + VD Sbjct: 25 VGTDSRADCTGQLFVALRGERFDGHEYVAAAQAAGAVAAMVDQPL-----PLDLPQWVVD 79 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA A R R +IAITGS GKTT KEM+ LS + A G+ NN IG+ Sbjct: 80 DTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGRVRATRGNLNNDIGM 139 Query: 150 PLTL--ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 PLTL AR D DF + E+G +H GEI ++T + RP +A+IT AHL F +E +A Sbjct: 140 PLTLLSAR---DEDFLVLEMGANHHGEIGYMTEIARPEVALITNAGRAHLEGFGSVEGVA 196 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261 AK EI GL + G ++ D + L + + + + +F AD Sbjct: 197 RAKGEIARGLPEDGVFVVSGDSPYLGLWRELAEG---RRMLTFALDGAADLTAGTESIGV 253 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 +W ++ ++ ++ + G H +N L L D L Sbjct: 254 EWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAASAGALALGLDRAAIAAGLESLT 313 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +GR C +ID+SYNANP S+ AAI+VL+ ++ GRR VLGD+ E+ Sbjct: 314 PVKGRLYPRLCR----EIGVIDDSYNANPDSIAAAIAVLAGLT----GRRTLVLGDLGEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQ 438 G + H ++ E + + F V L R+ H+++ D L ++ Sbjct: 366 GADAARLHAEIGEQAHAAGLDRL----FTVGTLSAEASRAFGAGAEHFAD-QDALLNRLK 420 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L GD V+VK S R++ L E Sbjct: 421 ADLKPGDRVLVKGSRLARMERIVEALCAE 449 >gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] Length = 452 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 214/448 (47%), Gaps = 33/448 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 +N I DSR I + F ++G DGH+FI A GA VA+ +I Sbjct: 26 INAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGA---------VATFSEKNITSD 75 Query: 84 -PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V D L A LA + + +IA+TGS GKTTTK+M+ L++ KTY G+ Sbjct: 76 YPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTKDMIATILATTYKTYKTQGN 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNN IG+P T+ MP D + + E+G HLG+I L++L PHIAV+T I AHL F Sbjct: 136 YNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTHPHIAVVTLIGEAHLEFFGS 195 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E+IA K +I +G++ G + D L K + + FG AD + Sbjct: 196 REKIAQGKMQITQGMDGHGILIAPADKIISSFLPEK------QKVIRFG----ADEDIFV 245 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++++ + E+ G + A N ++ + +L + I AL+ + Sbjct: 246 TELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNL 305 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+G Sbjct: 306 TRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELG 362 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HY---SETMDGLFLF 436 + + H + L I ++L G + AL D + + V +Y ++ +D L Sbjct: 363 DSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQ 422 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 IQ L D +++K SNS +++ L Sbjct: 423 IQKVLGPNDQILLKGSNSMKLAQVVECL 450 >gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806] Length = 454 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 143/456 (31%), Positives = 217/456 (47%), Gaps = 31/456 (6%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I P V+GI+ DSRSI +AF A+KG +++GHDFI A+ +GA ++V+ + + Sbjct: 22 ISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIARGAAALIVDQPVSVNY 81 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 S +IPVF V + L +LA R + +IAITGSVGKTTTKE++ L++ K + Sbjct: 82 SS-NIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATRGKVHK 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 + +YNN IGVP TL + D + E+GM GEI L + +P IAVIT + AH+ Sbjct: 141 TLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIG 200 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 IA AK E+ + LNYD AK G Y F F Sbjct: 201 RLGSESAIAEAKCELLSESPSSSIAVLNYDHPLLT-ETAKRVWQGETITYGF-------F 252 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + V ++ + G H A N + L + IL D + + + Sbjct: 253 GGDIVGELLDLTTLRVNGLDFNLPLS----GRHHALNFMAALAVAKILGIDWTSLQQGIK 308 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V P GR KRY+ + L+DE+YNA SM AA+ +L R +AVLG M Sbjct: 309 VNLPS-GRAKRYQLEPD---ILLLDETYNAGLESMLAALDLLKATPGQ---RHLAVLGTM 361 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLALKDALPRSIHVHYSETMDG 432 E+G S+ H + E + I +++ + F A H ++ ++ Sbjct: 362 KELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAATGVACECFQTH-ADLINR 420 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L I S GD ++ K+S+S G R++ L+ + Sbjct: 421 LKEVIDS----GDRILCKASHSVGLNRVVEELISDI 452 >gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 445 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 221/469 (47%), Gaps = 37/469 (7%) Query: 11 LQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L AI G ++ PQ G+S D+R + P F A+ G +DGHD++ A Q GA Sbjct: 5 LTAILGENLRRSPQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAI 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + + +P + V+D L A L R + +I ITGSVGKT+TKE++ Sbjct: 65 ALITSRPL-----ETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGITGSVGKTSTKELI 119 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + K ++NN IGVP TL + D DF + E+ M GEI L + +P I Sbjct: 120 AGILGTQGKVLKTEANFNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQPTI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT + AH+ E IA AK E+ E + K LN D+ ELL A + + Sbjct: 180 GIITNVGTAHIGRLGSREAIAKAKCELLEFMPKDSVAMLNADN---ELLMATAATVWSGE 236 Query: 247 IYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S+G S+ ++ + ++Q + V L G+ H A N L LG++ Sbjct: 237 TLSYGFSQGDLTGEYIAPDQVKVADQVF-PVPLAGQ-----------HNALNYLAALGVM 284 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L +S+ PK G+ R L L+DE+YNA SM AA+ +L Q Sbjct: 285 QVLGFGWQGLTTEISLAMPK---GRSQRIVLPNDIV-LLDETYNAGLESMLAALDLLKQT 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPRS 421 G+ R IAVLG M E+GE S++ H + E + +V + A+ D Sbjct: 341 P--GD-RHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLVDDPEAQAIADGALGV 397 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L +++++ GD ++ K+SNS G R++ L + + A Sbjct: 398 PSLCFPDHRS-LIEHLRANMQPGDRLLFKASNSVGLSRVVEALQQTYSA 445 >gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] Length = 454 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 215/461 (46%), Gaps = 42/461 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++QA++G S G V IS D+R+I F A+KG ++DGHDF A++ GA Sbjct: 6 LSEIIQAVRG-SYGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV PV G VD AL A R R ++ ITGSVGKTT Sbjct: 65 AVVTER-----------PVDGARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ +S KT ++NN +G+P TL + + E+GM+H GEI ++ Sbjct: 114 TKEMIWSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMSTS 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + VIT I +H+ N E I AK EI +G + L+ DD +K Sbjct: 174 CKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDDRIL----SKVQV 229 Query: 242 LGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + I+ + S K++D S+ + + + + +G H +N L Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAF 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L D I L+ F P+ G R G ++D YNA P SMKA++SVL Sbjct: 290 CVGAALGMDNADIIAGLADFRPE---GMRQNIIEENGVTYILD-CYNAAPDSMKASLSVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411 Q+S GRRIAVLGDM E+G+ S +H + E +L S+ ++ G Sbjct: 346 GQVSVR--GRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNYYIEG--- 400 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 A R+ H+ ++ + L ++ L +GD V+ K S Sbjct: 401 -ACDKGFDRANTAHF-DSREELAEHLKGILKEGDAVLFKGS 439 >gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 460 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 207/398 (52%), Gaps = 46/398 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 + GI IDS+ I F I DGHD++ A+ GA VAS+ S Sbjct: 33 IQGICIDSKKIKKGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LS+ + + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKDIINTILSTTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQPDVAIITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 EEIA AK EI +GL+ G N D+ LLK K+ L +FG+ DF Sbjct: 203 LGSREEIAKAKLEIIDGLKDEGLCLYNGDEPL--LLKNKN--LSSINCKAFGEKYTNDFF 258 Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 QL ++ K +V L GK +++ +G + Q ++ + Sbjct: 259 PTNVQLDEYGIHFKLNDSNIQYDVPLHGKH-NILNAIVGIAIGQ-------YYNVPVEKI 310 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ +++ H R++ + FT+I++++NA+P+SMKAAI ++ + + Sbjct: 311 QKALRQVNITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETFQTLNAY--KK 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G Sbjct: 363 KIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYG 400 >gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] Length = 452 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 218/444 (49%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + +P Sbjct: 24 LDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVSRAL-----DTDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A I+A+TGS GKT+ KEM LS KT G+ NN Sbjct: 79 VVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTAAILSRCGKTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL G +N D++ + + + +G + ++ F + N+DF Sbjct: 199 AKAKGEIFTGLSANGIAIMNADNNDWLNWQ---NIIGDRKVWRFSPNAANSDFSATNVHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 S + +Q S++V+ G H N L +S+ A+KA L Sbjct: 256 TSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA-ALSMAVGATPEAVKAGLKDLQAVP 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + A NQ L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G Sbjct: 315 GRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S++ H+ + E I V +G A+ A + H+++ L +++ + + Sbjct: 368 SEACHVQVGEAAKTAGIDRVLSTGKLSQAISHA--SGVGEHFADKT-ALVAHLKALIAEH 424 Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466 + ++VK S S ++ L E Sbjct: 425 QIITILVKGSRSAAMEEVVRALQE 448 >gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 451 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 212/398 (53%), Gaps = 46/398 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+SI F I DGHD++ A+ GA VAS+ S Sbjct: 24 IHGVCIDSKSIKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VDD L AL +LA R +I ITGS GKTT K++++ LS+ + + Sbjct: 74 PKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTVKDIISTILSTTHRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P I +IT I +HL Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIAQPDIVIITMIGHSHLET 193 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 EEIA AK EI +GL+ G N D+ LLK K+ L T +FG+ D Sbjct: 194 LGSKEEIAKAKLEIIDGLKDEGLCLYNGDEPL--LLKNKN--LSSITCKAFGEKYTNDLF 249 Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 QL ++ K + +V L GK +++ +G + Q ++ T + Sbjct: 250 PTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-NILNAIVGIAVGQ-------FYNVPTEKI 301 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ +++ H R++ + FT+I++++NA+P+SMKAAI L ++ + + Sbjct: 302 QKALRQVNITH------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQTLNAY--KK 353 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ V+GDM E+G+ ++++H ++ ++L+ +I +V+ G Sbjct: 354 KMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYG 391 >gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia sp. 4_1_40B] gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli H736] gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli] gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K12 substr. W3110] gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli DH1] gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Escherichia coli ETEC H10407] gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia coli DH1] gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1520] gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] Length = 452 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448 >gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] Length = 456 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 207/454 (45%), Gaps = 44/454 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR I F AI+G DGH FI ++ GA V I S S P Sbjct: 28 VTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIHDGALCAVSEK----RIESASYPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ AL +A R + ++ I+GSVGKT+TKEM+ L G++NN Sbjct: 84 MVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTSTKEMIASVLGQKYNVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G+S GE+ L + RP + V+T I AHL E I Sbjct: 144 IGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSREGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+F + G I LN DD + +H I+ ++ F L Sbjct: 204 LKAKTEMFLYMNPKGDIILNGDDDMLASVTPANH---IEPVF---------FGLDPALAY 251 Query: 267 SEQSWMEVQLQGKSMEV--------VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 S + + L+G S H I G HM N L + + +L + + + Sbjct: 252 SAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGI 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 P GR + F T+ID+ YNANPASMKA++ VLS+ +G +A+LGD Sbjct: 312 ESLVPLAGRNN----LIETEFLTIIDDCYNANPASMKASLDVLSK----AKGHTVAILGD 363 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETM 430 M E+G + H + E + I + G+ L + + R + VH+ +T Sbjct: 364 MFELGPKAHEMHCETGEFAAEAGIDELICIGY----LSEDIARGAVSANPEMEVHHFDTK 419 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I + + D ++VK+S++ F ++ +L Sbjct: 420 TEFLDHIDTLINKDDTILVKASHAMEFPEIVEIL 453 >gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E482] Length = 452 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448 >gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] Length = 453 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 219/445 (49%), Gaps = 22/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ D+R ++ F A++G +D HDF+ A+ GA ++V+ + ++ + + Sbjct: 24 VDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMAAGASALLVSKHVTVAVPQVVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +LA R +S A ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 82 ---DTRIALGQLAGWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + + ELG +H GEI + T + RP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLNASHQYAVVELGANHQGEIAYTTEITRPETALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWK 264 A AK EIF+GL GT LN D + + + H+L KT++ F + A DF K Sbjct: 199 AKAKGEIFQGLPINGTAILNADSNDWPHWQ---HSLHSKTVWRFSSAPQADSDFSATDVK 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S + + S+ + G H N L + + A + K LS H + Sbjct: 256 VTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAAALALSVDAPLSAIQKGLS--HLQA 313 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G+ Y AL + L+D+SYNAN SM AA VLS++ G R+ V+GDM E+G+ Sbjct: 314 VPGRLYPVALAENKL-LLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMGELGDE 368 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ H ++ E L I V G + +A H+ + +Q+ L + Sbjct: 369 AEECHREVGEAARLAGIDKVLSVGKMSHLISEASGAGEHLQDKAAVTA---RLQTLLAEH 425 Query: 445 DV--VVVKSSNSCGFYRLINLLLEE 467 DV ++VK S S +++ L E+ Sbjct: 426 DVITILVKGSRSAAMEQVVQSLQEK 450 >gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] Length = 453 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 216/476 (45%), Gaps = 49/476 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q QG IG +S D+R I Q F A+ G +D HDF AV GA ++ Sbjct: 9 LAQLTQGQLIG--DDAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALL 66 Query: 70 VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V +L +PV V D AL +L R + +AITGS GKTT KEM+ Sbjct: 67 VER-------ALDLPVAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L K G++NN IG PLTL R + DF + ELG +H+GEI + T LVRP +A Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 ++ +A AHL F I+ + AK EI++GL G +N D E + L K + Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236 Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296 +F S+ ADF + + QGK+ V+H IG H N Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANA 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + I A + L P +GR + + N LID+SYNA+ +MKAA Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + +L + G+R VLG M E+G S + H + E + N HV G + Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+S+ + L +I+ +L + + V+VK +NS G ++ L E + Sbjct: 401 LCGGK---HFSDHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452 >gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 453 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 187/380 (49%), Gaps = 17/380 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R +A F A+KG +D HD+ AV+ GA ++V+ + +++P Sbjct: 24 IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHL-----PINVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L R +S A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 LVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + T LVRP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264 A AK EIF GL G +N D + F + L KT++ F + DF Sbjct: 199 AQAKGEIFSGLPADGVAIVNADSNDFPHWQVM---LNHKTVWRFSPQAACDIDFFASDVD 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + +V+ G H N L + + A ++ LS Sbjct: 256 VLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMSVGATLEAVKAGLSQLQAVP 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + AL++G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ Sbjct: 316 GR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDE 368 Query: 385 SQSFHIDLAEVLSLYNISHV 404 + H + E I V Sbjct: 369 APECHRQVGEAARAAGIDRV 388 >gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] Length = 450 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 196/393 (49%), Gaps = 23/393 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A+ G I +G N IS D+R I F A+KG +++G+D+ + A++KGA ++ Sbjct: 7 EIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGASII 66 Query: 69 VVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +++ D+ I L + V D AL LA R + ++ ITGS GKT+TK+++ Sbjct: 67 IID-DVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTKDLV 125 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS K + G++NN IG+PL + + D D + E+GMS+ GEI L + P + Sbjct: 126 AAFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKLASIALPDV 185 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHAL 242 IT I AH+ E I K I + E ++ +N ++ + + K + Sbjct: 186 GAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCENDMLKTIVECDKFNLERV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301 G + Y+ SKN K SE + +V ++ + +G H N L+ + Sbjct: 246 GYDSTYNL-YSKN-------IKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIGIQ 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + K L F+ R + +N+ FT+I++SYNANP SMKAA+ VL Sbjct: 298 IARNFGLTFEEMEKGLGNFNATSMRLE----VINKDKFTIINDSYNANPDSMKAALEVLK 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 S R+IAVLG M E+G+ ++ HI + E Sbjct: 354 NYSGS---RKIAVLGTMGELGDYAEEAHIQVGE 383 >gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 130/446 (29%), Positives = 211/446 (47%), Gaps = 20/446 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + ++ DSR I F ++G DGHDF+ A+ GA + +I Sbjct: 21 QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L A+ LA + T++ ITGS GKTTTK+M+ LS + ++ Sbjct: 78 AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI + L + G N D+ LL+ ++ L + +FG + Sbjct: 198 DKIADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGF 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + + + + IG H N + + + + +LS F P Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + + + + YN+NP +++A ++ Q+ GRRIAVLGDM E+G+ Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S + H L++ L I+ V+L G + L DAL P +H + + MD + ++ Sbjct: 369 NSPALHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYKPEHLHYYTKDQMDRMIDDLK 428 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + + D+VV+K S+ G Y L N+L Sbjct: 429 NDIKSDDIVVLKGSH--GMY-LENVL 451 >gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli] gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli K-12] Length = 452 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 215/444 (48%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A AG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSAAMEEVVRALQE 448 >gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK160] Length = 456 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 216/444 (48%), Gaps = 31/444 (6%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR I P F +KG DGHDFI A +GA + ++ + G+ + VDD Sbjct: 30 EFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDD 82 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 VL A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P Sbjct: 83 VLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T+ MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGK 202 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSL 254 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + +++ G Y+ M+ + +D D A +A S R + + Sbjct: 255 SFDCNFLEQKIDLPVTG-KYNATNAMIAAYAALQEGVSDADIA-QAFSELELTRNRTE-W 311 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + A N ++ + YNANP +M+ + S I + GR++AVL DM E+G ++S H Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHG 369 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440 + L+ ++ ++L G + AL D + I+ VHY + + L ++ Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREK 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L D +++K SNS +L+ L Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452 >gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51] gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 480 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 142/463 (30%), Positives = 221/463 (47%), Gaps = 48/463 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84 +G IDSR + E FFA+ G DGHD+I A QKGA +V+ + + + +P Sbjct: 15 SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 74 Query: 85 -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + V+ L A+ LA A R A ++AITGS GKTTTK+M+ LS + + + + Sbjct: 75 ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRVHKNMENQ 134 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+P+T+ P + + I E+GM LG+I FL + RP I VIT I H+ Sbjct: 135 NNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVITNIGTTHMELLGSQ 194 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD-------------SFFELLKAKSHALGIK--TIY 248 + IA AK E+ E L +TG+ LN +D +FF L+ + H ++ + Sbjct: 195 QAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLEGRFHEPDLRGMNLT 254 Query: 249 SFG----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLG 301 FG + + Q+ +C+ + EV + H + G H + L L Sbjct: 255 PFGILGTRFQVGHRQVGHGDRCA-VPFAEVAAEVGQKTCPHVSLPLPGEHNVLDALAALS 313 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISV 359 + +L ++ + L+ R R L+QG TLI + YNANP SMKA++ V Sbjct: 314 VGILLDVSLEEGCRGLAAMELS-----RMRLELHQGPEGSTLISDVYNANPTSMKASLQV 368 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 L + G +A+LG+M E+GE S+ H ++ + ++ IS + G AL Sbjct: 369 LKE---RGGASTLAILGEMYELGEASREGHYEVGQTVAELGISELITVGPLAEEIACGAL 425 Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSN 453 + L P+ IH +G Q L D G V++K+S Sbjct: 426 EKGLSPQRIHSFPDR--EGAIKKAQELLADLNQGTWVLIKASR 466 >gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 3431] Length = 452 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSASMEEVVRALQE 448 >gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 452 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 135/438 (30%), Positives = 219/438 (50%), Gaps = 21/438 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + T L+ GR + Sbjct: 262 FTLQTPRGSIDVLLPLPGRHNIANALAAAALSMAVGATLTTIKAGLATLKAVPGRLFPVQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ HI Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHIQ 374 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVV 449 + E I V +G A+ A + H+++ L +++ L + + ++V Sbjct: 375 VGEAAKAAGIDRVLSTGKRSQAISHA--SGVGEHFADKA-ALIARLKALLQEQPMMTILV 431 Query: 450 KSSNSCGFYRLINLLLEE 467 K S S +++ L E+ Sbjct: 432 KGSRSAAMEDVVHALQEK 449 >gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] Length = 455 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/431 (31%), Positives = 206/431 (47%), Gaps = 18/431 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSRS+ Q A F DGH+F+ A Q GA + D IP+ Sbjct: 25 ITSVSFDSRSLE-QGALFVPLIASNDGHEFVEAAKQNGACAALWQKDHENR--PQGIPLL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL K+ + ++AITGS GKTTTK+M+ LS+ ++NNH Sbjct: 82 IVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMIAAVLSTQFNVAKTHDNFNNH 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM H GE+ L HL+ P +AVIT I AH+ F + I Sbjct: 142 IGVPMTVLSMEPNTEILVVEIGMDHFGELDHLVHLLDPDVAVITMIGEAHIEFFKTRDRI 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI L++ G + N D+ LL ++ L +T +FG N D Q + Sbjct: 202 ADAKMEITHALKEDGLLVYNGDEP---LLIERAEKLDFET-KTFGTGANVDLQAQNIVSD 257 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +E++ V+ Q + IG + +N L L + S D + +KAL F R Sbjct: 258 AEKTSFRVK-QWPELNFTIPMIGAYNVKNALAALCVGSEFQIDPRSMVKALEHFDLTRNR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + ++ + YN+NP + ++ + GRR AVLGDM E+GE Sbjct: 317 TEWVKAS---NGADILSDVYNSNPTACAEVLTAFQ--NAETTGRRYAVLGDMLELGEQGP 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSL 441 H LA+ + + V+L G + L +AL IH + + + L ++ L Sbjct: 372 KMHAGLADKIDPKKVDEVFLCGPLMKNLAEALTDKFDQGKIHHYATGEKEQLVSDLKERL 431 Query: 442 VDGDVVVVKSS 452 D+V++K S Sbjct: 432 RSEDMVMLKGS 442 >gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] Length = 454 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 218/448 (48%), Gaps = 23/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I F A+ G +D HDF AV+ GAG ++V + ++++P Sbjct: 24 IESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQKTL-----NVNVPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL ++A + +AITGS GKTT KEM+ L K G++NN Sbjct: 79 VVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHVGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK-- 262 AK EI++GL G +N D + +AK L K + +F ++ +ADF Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----EAKWDQVLADKKVITFSQNNTDADFYASNIV 254 Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 E S+ + + + +E+ IG H N + I A ++ L + Sbjct: 255 LNAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALQFGATLEEVRTGLKHLN 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + N LID+SYNA+ +MKAA+ +LS +G+R +LG+M E+ Sbjct: 315 KVKGRVEVEELSDN---IKLIDDSYNASVPAMKAAVDLLSAF----QGQRWLILGNMAEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440 GE S + H + E + HV G + + L IH + E +D + + + Sbjct: 368 GEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQA 426 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + ++VK +N + + L E + Sbjct: 427 GPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Clostridium cf. saccharolyticum K10] Length = 476 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 216/439 (49%), Gaps = 28/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-------VASIGSLS 82 ISIDSR+ + F + G DGH FI+ A+++GA V + A+ Sbjct: 29 ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 88 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VDD AL +L R R ++ ITGSVGKTTT+EM+ ALS+ + + Sbjct: 89 AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSAGFHVFKTPAN 148 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ +GVPLTL+++ + G+ ELGMS GE+ + + +AVIT + H+ N Sbjct: 149 HNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLGT 208 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--- 259 E I K +I +G+ G +FLN D+ + +A+ G KT+Y FG +NAD++ Sbjct: 209 RENILREKLKIQDGMRADGPVFLNGDNDLLGISRARE---GHKTVY-FGTGENADYRAVD 264 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +R + C + + + + + V +G H N L L + ++ A + L Sbjct: 265 IRLERGCPSFTMVHGE---RRIPVTLSVMGEHNVLNALAALAVADYNGVPLEAAAEKLRE 321 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F G R + QG T+ID++YNA+P SMKAA+ VLS RR+AVL DM Sbjct: 322 FT---GFKNRQQIREKQG-ITVIDDTYNASPDSMKAALRVLSSFGQA--RRRVAVLADMK 375 Query: 380 EMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 E+G + FH ++ E L+ + + L+G ++ P S+ + + Sbjct: 376 ELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGARERRP-SLQTAAFTDREKMTE 434 Query: 436 FIQSSLVDGDVVVVKSSNS 454 F++ L GD V+ K SNS Sbjct: 435 FLKRELSAGDCVLFKGSNS 453 >gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] Length = 456 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 178/370 (48%), Gaps = 24/370 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+IAP + F A+ GP +DGHD++ KGA +V + + + +P V Sbjct: 28 VGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKGAVAALVERE----VANAPLPQLLVA 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHI 147 D AL +L R + A+TGS GKT+ KEML L + A G+ NN + Sbjct: 84 DTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVKEMLAAILRAGLNGAVLATRGNLNNDL 143 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL + + G+ ELG +H+GEI + L RP + +IT AH+ F G E+I Sbjct: 144 GAPLTLLELAPEHRAGVIELGANHVGEIAYTVSLTRPQVTIITNAGNAHVGEFGGPEKIV 203 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ----LRK 262 AK EI EGL + G LN DD F + ++ + SF + ADF R Sbjct: 204 QAKGEILEGLAQDGVAVLNLDDKAFSTWQRRAAG---HQVLSFALRDTRADFHGSDLARD 260 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + C Q + G S+ + + +G H N L L + K L P Sbjct: 261 ERGC--QGFTLRSPVG-SVRIQLNLLGEHNVANALAACAAAHALGLPLVAMAKGLENLQP 317 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR L +ID+SYNANP SM AA+ +L+ S GR + VLGDM E+G Sbjct: 318 VKGRAV---AQLAPNGMRVIDDSYNANPVSMCAAVDILAGFS----GRTVLVLGDMGELG 370 Query: 383 ELSQSFHIDL 392 E ++ H D+ Sbjct: 371 EWAEQGHRDV 380 >gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] Length = 480 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 216/439 (49%), Gaps = 28/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-------VASIGSLS 82 ISIDSR+ + F + G DGH FI+ A+++GA V + A+ Sbjct: 33 ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 92 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VDD AL +L R R ++ ITGSVGKTTT+EM+ ALS+ + + Sbjct: 93 AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSAGFHVFKTPAN 152 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ +GVPLTL+++ + G+ ELGMS GE+ + + +AVIT + H+ N Sbjct: 153 HNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLGT 212 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--- 259 E I K +I +G+ G +FLN D+ + +A+ G KT+Y FG +NAD++ Sbjct: 213 RENILREKLKIQDGMRADGPVFLNGDNDLLGISRARE---GHKTVY-FGTGENADYRAVD 268 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +R + C + + + + + V +G H N L L + ++ A + L Sbjct: 269 IRLERGCPSFTMVHGE---RRIPVTLSVMGEHNVLNALAALAVADYNGVPLEAAAEKLRE 325 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F G R + QG T+ID++YNA+P SMKAA+ VLS RR+AVL DM Sbjct: 326 FT---GFKNRQQIREKQG-ITVIDDTYNASPDSMKAALRVLSSFGQA--RRRVAVLADMK 379 Query: 380 EMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 E+G + FH ++ E L+ + + L+G ++ P S+ + + Sbjct: 380 ELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGARERRP-SLQTAAFTDREKMTE 438 Query: 436 FIQSSLVDGDVVVVKSSNS 454 F++ L GD V+ K SNS Sbjct: 439 FLKRELSAGDCVLFKGSNS 457 >gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 215/476 (45%), Gaps = 49/476 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q QG IG +S D+R I Q F A+ G +D HDF AV GA ++ Sbjct: 9 LAQLTQGQLIG--DDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALL 66 Query: 70 VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V +L +PV V D AL +L R + +AITGS GKTT KEM+ Sbjct: 67 VER-------ALDLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L K G++NN IG PLTL R + DF + ELG +H+GEI + T LVRP +A Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQLVRPDVA 179 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 ++ +A AHL F I+ + AK EI++GL G +N D E + L K + Sbjct: 180 LVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW---TQVLADKQV 236 Query: 248 YSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNM 296 +F S+ ADF + + QGK+ V+H IG H N Sbjct: 237 TTFSASSEQADFYATD---------IVLDTQGKASFVLHTPEERIPVSLGIIGQHNVANA 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + I A + L P +GR + + N LID+SYNA+ +MKAA Sbjct: 288 IAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDN---IKLIDDSYNASVPAMKAA 344 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + +L + G+R VLG M E+G S + H + E + N HV G + Sbjct: 345 VDLLGSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+S + L +I+ +L + + V+VK +NS G ++ L E + Sbjct: 401 LCGGK---HFSNHGE-LIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452 >gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] Length = 469 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 17/445 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPV 85 I+ D+R I+ + F A++G +DG DF A+++GA V+V T + S + V Sbjct: 31 ITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKGTV 90 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD L A +A A R++ +IAITGS GKTTTKE+ LS K +YNN Sbjct: 91 LKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRGKVCRTAENYNN 150 Query: 146 HIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 +G+PLTL + V DF + E+GM LG+I L + P I ++T + H+ IE Sbjct: 151 EVGLPLTLLGI-VPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLGSIE 209 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AKAE+ E + GT+ LN DDS +++ + A G++ I ++ +AD + + Sbjct: 210 NIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFA-ADGVR-ILTYAIDADADVRAEALQ 267 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ S V + E G H N TL ++ A T + + E Sbjct: 268 CAADGSRFMVTYANERHEYAVSLPGRHNVSN---TLAALAAGFALGLTPQEMQAGLRNIE 324 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G RY + G + I+++YNA+P+SM AA+ + + P GR+IAVLGDM E+G Sbjct: 325 GTKMRYETE-SVGAWMFINDAYNASPSSMHAALETTAALYP---GRKIAVLGDMLELGAA 380 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLV 442 ++ H + + + V G + +A + ++ET + ++ L Sbjct: 381 AEEAHRMIGRRAAELGFAAVVTYGPQARWIHEAAEETGCAACFHAETHEEAAQLLRKILS 440 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 DGD V+ K S ++I LL E Sbjct: 441 DGDTVLFKGSRGMRMEQVIALLTGE 465 >gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 468 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 228/468 (48%), Gaps = 57/468 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLS- 82 + I+ D+R++ P E F A++G ++DGH+F+ A++KGA V+V + + + I LS Sbjct: 29 LITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSN 88 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IP+ V++ L A K+A R R +I++TGSVGKTTTKE++ L++ K Sbjct: 89 NIPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQGKVMKTEA 148 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNN IGV TL ++ + ++ + E+ M GEI LTH+ P I +IT + AH+ Sbjct: 149 NYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGTAHIGRLG 208 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E IA AK E+ + + LNYD+ L++ + +T +++G Sbjct: 209 SVEAIAEAKCELLREMSDSSIAILNYDNQ--RLIETAAKVWSGET-FTYGLEGG------ 259 Query: 262 KWKQCSEQSWMEVQLQGK---SMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVD 311 LQGK S + G+ G H A N L L ++ +L Sbjct: 260 -------------NLQGKLIDSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGK-- 304 Query: 312 TAIKALSVFHPKEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 I A ++F G R R + ++DESYNA SM AA+++L++ Sbjct: 305 -NIPAKTLFQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPG 363 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFH---VLALKDALPRS 421 R IAVLG M E+G S FH + V+ NI ++ L+ F +A A + Sbjct: 364 K---RHIAVLGTMKELGNKSILFHQQVGNVVKNLNIDGLFILADFEEAKAMATGAASLQF 420 Query: 422 IHVHYSETMD----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I V + T D L ++Q L GD V+ K+S+S +++ LL+ Sbjct: 421 IKVE-NITADNAHHNLAKYLQEFLQPGDRVLFKASHSVELNKVVELLI 467 >gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] Length = 452 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFTGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAGAALAMSVGATRDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ + + H+++ L +++ + + Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAI--GVASGVGEHFADKT-ALIAHLKTLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] Length = 431 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 126/437 (28%), Positives = 213/437 (48%), Gaps = 21/437 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R I FFA+KGP++D ++F A+++GA LVV+ D F Sbjct: 15 GVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVI--DDPKYFIEDDERYFLA 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L L LA R + II +TGS GKTT+KE+L L + KT A +G+ NNHIG Sbjct: 73 KDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL +P D + I E+G + G+I L + P IT I AHL G + Sbjct: 133 VPLTLLSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFITNIGRAHLEGMGGPAGVLK 192 Query: 209 AKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+F+ L GT+F+N D +L + +Y DF + + + Sbjct: 193 TKTELFQFLRANKGTVFINSQDP---VLSNMAKRFDKPVLY----PAKGDFCEVGFVEAN 245 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +++ ++G + IG + N+ L + ++ AI+A+ + P R Sbjct: 246 --PFVKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMKGAIEAIVNYQPSNMRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N +I ++YNANP+SM+ AI +++ G+ ++ +LGDM E+GE ++ Sbjct: 304 QLLEKRSN----LIILDAYNANPSSMEVAIRTFGEMT--GKKHKMIILGDMFELGEHAEE 357 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L E++S Y I V +G +++ P++++ + ++Q S ++ ++ Sbjct: 358 EHAKLGEIISEYEIEKVCFTGKLIVSALARYPKALYFPDPFSFRN---WLQDSQLEDYLI 414 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S L++ + Sbjct: 415 LIKGSRGMKLEGLVDFI 431 >gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 220/454 (48%), Gaps = 37/454 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S D+R+I F A+ G ++D HDFI AV KGA ++V+ + ++ P Sbjct: 24 VSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVIKGAAALIVSQKL-----QITTPHI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL KL K +AITGS GKTT KEMLT LS + G++NN Sbjct: 79 LVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKTTVKEMLTSILSQKGQVLFTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + DF + ELG +H+GEI + T LV P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRAKPEDDFAVIELGANHIGEIDYTTRLVNPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSK----NADF 258 AK EI+ GL+ +N D + + ++L K+ +KT+ S SK D Sbjct: 199 MQAKGEIYNGLKSGAVAVINLDSNGGQYWQDVLADKT----VKTV-SMNDSKADYFATDI 253 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 QL + E S++ G+ + + +G H N L + A ++ L+ Sbjct: 254 QLNER---GEASFIMTTPIGECV-IQLSLVGQHNVANALSATSLALEFGASLEDVKSGLN 309 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + LN+ LID+SYNA+ +MKAAI +LS G+R +LG+M Sbjct: 310 QLTKVSARAEVIE--LNKQ-IRLIDDSYNASVPAMKAAIDLLSNY----RGKRWLILGNM 362 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+GE S + H + + + + +V G + + S +H+ + + FI+ Sbjct: 363 AELGEESLALHRQVGQHAAPFRFDYVLTYGADAKVISE---ESDGIHFCD-HQSMIDFIK 418 Query: 439 SSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 L ++VK + S G ++ + E F Sbjct: 419 KQLGHEKAQQQTLLVKGALSAGMSVVVKAIKESF 452 >gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 205/445 (46%), Gaps = 16/445 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + ++ +S+ I P F +K DGHDFI A+ GA + D + IPV Sbjct: 26 LITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQDAIDHGAQATLWAND--PADAPSEIPV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D A LA +IA+TGS GKTTTK+M LS+ Y G+YNN Sbjct: 83 IQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGKTTTKDMTAATLSTTFNVYKTQGNYNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +GVP T+ MP D + + E+GMS GEIRFL L +AVIT I +H+ E Sbjct: 143 QLGVPFTILSMPEDTEVLVVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSREN 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI EGL++ GT D+ + +A IK I G + D Sbjct: 203 IAKAKLEILEGLKEDGTFIYPGDEPLVD--QAVVDMPEIKKI-RVGLDDSEDVYAENIVN 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E + L ++E+ G + +N LM + V+ LS F + Sbjct: 260 EREHTHFYTNL-SPNVELSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQF---KL 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGEL 384 R + + +++++YNANP++M+A I SQ+ P ++ VLGDM E+G+ Sbjct: 316 TANRSEWLMGKDDIQILNDTYNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKY 375 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQS 439 S S H +AE + +I V+L G + AL AL P +Y E L + Sbjct: 376 SASMHASIAEEIDSPHIDGVYLYGKEMQALARALQEKGYPEDKIHYYPEDKAALIKDLLD 435 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 + D ++VK+S+ G ++ L Sbjct: 436 QVQSQDQILVKASHGMGLAEVVAAL 460 >gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] Length = 455 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 231/473 (48%), Gaps = 29/473 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L F ++++AI G I I N +S D+R I F A+KG +++ +D+I+ A Sbjct: 2 ELLKFEEIVEAIHG-KIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEAS 60 Query: 62 QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +KGA L +V+ ++ + L + V V + AL LA R + +I ITGS GK Sbjct: 61 KKGANLCIVD-EIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK++ ALSS K + G++NN IG+PL + + D + E+GMS EI L Sbjct: 120 TSTKDLTAAALSSKFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEIHRLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP IA+IT I +H+ N E I AK EI + + + +N ++ + + + Sbjct: 180 KVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDISSDD 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + S G ++ ++ V K+ + G H N L+ Sbjct: 240 YK-----VISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLA 294 Query: 300 LGIVSILTADVDT---AIKALSVFHPKEG--RGKRYRCALNQGFFTLIDESYNANPASMK 354 + +L + D IK LSV + +GK+ FT++D+ YNA+P SMK Sbjct: 295 IAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKK---------FTIVDDCYNASPDSMK 345 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI V++ I+ R+IAVLG M E+G S FH ++AE + NI + G A Sbjct: 346 AAIDVMNTITGK---RKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGEFNEAY 402 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 K+ + + ET++ F +++ D+++VK+S S F ++N L ++ Sbjct: 403 KEGFNK--NSKQFETIEDAAEFTTNNINKDDIILVKASRSMKFEYIVNKLKDK 453 >gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 222/471 (47%), Gaps = 34/471 (7%) Query: 13 AIQGHSI-GIV--PQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 A H++ G+V P G + N + DSR++ P F A++G +D HDF+ +GA Sbjct: 19 AASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAA 78 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 VVV L++P V D AL ++A R++ + +I +TGS GKTT KEM+ Sbjct: 79 VVVER----VPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIA 134 Query: 128 IALSSI--KKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L++ ++ Y G++NN IGVPLTL R+ + E+GM+H GEI L+ + P Sbjct: 135 TILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + ++ H + +E +A + L G DD F L + ++ G Sbjct: 195 TLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLWREEA---GA 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299 + + SFG S AD ++ + S ++V ++G +V +G H +N L Sbjct: 252 RRVLSFGLSAQADVSA-SYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAA 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++ ++ L F P GR +R + +ID++YNANP S++AAI V Sbjct: 311 AACALGAGIAIEAVVRGLESFAPVNGRLQRKEA---RSGALVIDDTYNANPDSVRAAIDV 367 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKD 416 L+ I+ G R+ VLGDM E+G+ FH ++ I + G H + Sbjct: 368 LAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVTAYG 423 Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A P+ + +H+ + + L ++ + G V+VK S R++ L+ Sbjct: 424 ATPQGVAQALHFDD-IAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLV 473 >gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] Length = 462 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 33/471 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGAS 65 Query: 67 LVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 L +V N D IG S V V+ AL LA + + ++AITGS GKT+TK Sbjct: 66 LCIVSEINFDK-EKIGKSSY-VIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS K + G++NN IG+PL + ++ D + E+GM+H EI + + Sbjct: 124 DLVAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N E I AK E+ + K + +N D+ ++ + Sbjct: 184 PDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLSNFESDKYK-- 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLM 298 + G K DF E +V QG E + G G H N L Sbjct: 242 ---VCKIGTEKKFDFNGENLNLEEESIEFDVLEQG---ETAYKGFNVNVPGKHNVLNSLT 295 Query: 299 TLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + +L D+ T IK L + R +G FT+I++ YNA+P SMKA Sbjct: 296 AIACGKVLDMNYEDIQTGIKNL------KATSMRLDIIKEKG-FTIINDCYNASPDSMKA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI V+ + R IA+LG M E+G H +++E I ++ G A K Sbjct: 349 AIDVMKNVKGK---RTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYK 405 Query: 416 DALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Y ++ +I++ + DGD+++VK+S + ++ L Sbjct: 406 EGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILVKASRAMKLEEIVKEL 456 >gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] Length = 456 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 179/369 (48%), Gaps = 22/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+IA + F A+ GP +DGHD++ KGA +V + + + +P V Sbjct: 28 VGTDSRTIAADQLFVALNGPRFDGHDYLAEVAAKGAVAALVERE----VANAPLPQLLVA 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHI 147 D AL +L R K ++ A+TGS GKT+ KEML L + A G+ NN + Sbjct: 84 DTRVALGQLGALNRQAFKGSLAAVTGSSGKTSVKEMLASILRAGLNGAVLATRGNLNNDL 143 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL + + G+ ELG +H+GEI + L +P +A+IT AH+ F G E+I Sbjct: 144 GAPLTLLELVPEHRAGVIELGANHVGEIAYTVSLTQPQVAIITNAGNAHVGEFGGPEKIV 203 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKW 263 AK EI EGL G LN DD F + + A G K + + ADF R Sbjct: 204 EAKGEILEGLPSDGVAVLNLDDKAF--VTWQRRAAGRKVLSFALRDTRADFHGSDLARDE 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + C Q + G S + + +G H N L L + ++ L P Sbjct: 262 RGC--QGFTLRSPIG-SARIQLNLLGEHNVANALAACAAAHALGMPLVAMVQGLESLQPV 318 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR L +ID+SYNANP SM AA+ +L+ S GR + VLGDM E+GE Sbjct: 319 KGRAV---AQLAPNGVRVIDDSYNANPVSMCAAVDILAGFS----GRTVLVLGDMGELGE 371 Query: 384 LSQSFHIDL 392 ++ H D+ Sbjct: 372 WAEQGHRDV 380 >gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] Length = 483 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 133/400 (33%), Positives = 189/400 (47%), Gaps = 46/400 (11%) Query: 22 VPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------- 70 +P + N + DSR + P F A+ G DGH F+ V +GA +V Sbjct: 8 LPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTA 67 Query: 71 ---NTDMVASIGSLSIP---------------VFGVDDVLGALNKLAVAARLRSKATIIA 112 N D VA L P + VDD L AL ++AV R T+I Sbjct: 68 LASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIG 127 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKT+TKE++ S +T S+N+ + +P TL + D + E+GM Sbjct: 128 ITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAA 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEIRFL L RP I ++T + P+HL IE IA+AKAE+ E L G LN DD Sbjct: 188 GEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRV 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHGIG 289 + +++ A + ++G + NAD +L S + + V +G+S + IG Sbjct: 248 AAMASRTAA----RVLTYGYAPNADVRL--LDVVSHGLYGIELTVGYEGQSHRLTTPLIG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A L + +L D D + L + G R R Q T+ID++YNA Sbjct: 302 RHHAYTALAAIAAGLVLGLDWDAIAEGLR----EPGEQLRLRIVPGQHGTTIIDDTYNAA 357 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 P S AA+ VL++ +GRRIAVLG+M E+G S H Sbjct: 358 PLSTIAALQVLAET----KGRRIAVLGEMLELGAASVEGH 393 >gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] Length = 459 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 29/458 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++L+A+ G + + G++ D+R+I+P E F A++G +DGH F+ A G Sbjct: 4 FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACING 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V+++ ++ V V + AL LA R++ ++A+TGS GKTTTK Sbjct: 64 ASMVIISERSSFKAVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKN 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ ++S A ++NN IG+ LTL M + + + E+GM LG+I L + P Sbjct: 124 MIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQIAELCRIAAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I V+T + +H+ E IA AK E+ E L G LN DD + +++ G Sbjct: 184 TIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPY--VIRMGDTFSG- 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +G + N + + + + ++ +V + +G H N L Sbjct: 241 -NIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L DV+ KALS F P G +++ +N T+ID+SYNANP SM+ A + Q++ Sbjct: 300 VLGIDVNRIQKALSEFLP--GAQRQFFTEING--VTVIDDSYNANPLSMEMAFHAMRQVN 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 VLGDM E+GE + FH +L ++ + NI GF + L R I Sbjct: 356 GK---HYFLVLGDMGELGEKEEQFHYELGKIAA--NI------GFDGMITVGKLSRHIAM 404 Query: 423 --------HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ T + + +Q + GDVV+VK S Sbjct: 405 GARDAGKTNIMECTTCEDAWQRLQKMIQSGDVVLVKGS 442 >gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] Length = 463 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 187/384 (48%), Gaps = 46/384 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R+I E F AIKGP++DGH F+ AV +GA V+V+ + + +P F V Sbjct: 27 INTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVIVDHSV-----KVQVPQFIVP 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL KL A IAITGSVGKTT KEM LS + A G++NN IGV Sbjct: 82 DARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEMCAAILSQHGEVLATKGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + ELG +H+GEI + T LV+P +AV+ +A AH+ F ++ +A A Sbjct: 142 PLTLLRLEPKHQYAVIELGANHIGEIAYTTDLVKPDVAVVCNVAAAHIEGFGSLDGVAQA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---- 265 K EIF GL+ G +N D + + +L T+ F S+ QL W + Sbjct: 202 KGEIFSGLKAGGIAVINADSPYVDYWLT---SLDKSTLCQFSMSQ----QLDVWPENIHL 254 Query: 266 ----------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 C+ + VQL G H N L+ + L + + Sbjct: 255 DKLGRAGFDLCTPTERIAVQLPIA---------GKHNITNALIACALTLPLGVTLAHVAQ 305 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ +GR T+ID++YNAN S+KA I +L QI EG +I Sbjct: 306 GLASMPMVQGRVNLIEV---NDSLTVIDDTYNANVQSVKAGIDLLGQI----EGHQIFAF 358 Query: 376 GDMCEMGELSQSFHIDLAEVLSLY 399 GDM E+G ++ +H E + LY Sbjct: 359 GDMGELGADARQYH----EEVGLY 378 >gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] Length = 456 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 192/394 (48%), Gaps = 28/394 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF++L QA+ + +G+SIDSR+I P + F A+ GP +DGHD++ KGA Sbjct: 6 TFNELAQALSARVLS--SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDVAAKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V ++ S ++P V D AL +L R + AITGS GKTT KE+ Sbjct: 64 VGALVQREVADS----ALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKEL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L + A G+ NN G PLTL + + + ELG S +GEI + L +PH Sbjct: 120 LAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRIGEIAYTVALTKPH 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+I AH+ F G E+I AK EI EGL+ +GT LN DD FE + + A G K Sbjct: 180 VAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRVR--AAGRK 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVS 304 + + ADF S + V +G +H G H+ N+L + + Sbjct: 238 VLTFAVLNAAADFH---------ASNITVDARGCPSFTLHSPQGSEHVQLNLLGNHNVAN 288 Query: 305 ILTADVDTAIKALSVFHPKEGRGK------RYRCALNQGFFTLIDESYNANPASMKAAIS 358 L A +S+F G G R L +ID++YNAN +S+ AAI Sbjct: 289 ALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSVCAAID 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +L + R++ VLGD+ E+G+ ++ H ++ Sbjct: 349 LLKGF----DTRKVLVLGDIAELGDWAEQSHREV 378 >gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] Length = 468 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 134/421 (31%), Positives = 200/421 (47%), Gaps = 31/421 (7%) Query: 5 WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L++A QG+ P+ + I DSR +AF A+KG +D HDF+ + K Sbjct: 14 WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDK 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V + L + V D AL +L R ++ + +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + LV Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I + AHL F G E I AK+EI+ + K GT + D F + ++ HA+ Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG + D + ++ + + EV G H QN Sbjct: 246 QTTRVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAI 357 + +D + L + +GR LN Q F ID++YNANP SM+AA Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGR-------LNFISHKQHLF--IDDTYNANPTSMRAAG 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKD 416 VL+Q S G ++ V GD+ E+G+ + H L L +I+ V G F AL+ Sbjct: 355 EVLAQQS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFVVTIGEFAPAALEG 410 Query: 417 A 417 A Sbjct: 411 A 411 >gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae Sd197] gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197] gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] Length = 452 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + I V G A+ A + H+++ L ++S + + Sbjct: 369 EACHVQVGGAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] Length = 466 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 225/457 (49%), Gaps = 25/457 (5%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G P + G+ DSR+IAP + F A+KG ++DGHDF+ A+Q GA +V + Sbjct: 19 GQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALVERGFNPTAA 78 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + VDD AL +LA A R A I+A+TGS GKT+TKEM+ L + + Sbjct: 79 GQCL--LRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQRFEVHKT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NNHIG+PLTL + + + E+GM+ GEI +L + RP +AVIT + PAHL Sbjct: 137 KGNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVITNVGPAHLGP 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 IE +A+AKAE+F+ L +N DD LL + L + I +FG A + Sbjct: 197 LGSIEAVAAAKAELFQALGPEAVAAVNLDDP---LLAPWADKLPCRVI-TFGLDPKAQAR 252 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + +++ + E V G H +N L + + L + + Sbjct: 253 ARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGLEAWQIKDGVE 312 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F P +G R +G LID++YNANPAS+ A + L+ +S G+G + ++GDM Sbjct: 313 AFTPTKG---RLENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGKGHGL-IMGDM 368 Query: 379 CEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 E+G + H + VL++ ++ ++G L A P+++ ++E Sbjct: 369 GELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGL--AAPKAL--AFAE- 423 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +D L + +G V+VK S + R+I L E Sbjct: 424 VDQLIDASPRVIGEGWTVLVKGSRAARMERVIQRLQE 460 >gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] Length = 450 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 129/444 (29%), Positives = 206/444 (46%), Gaps = 19/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G S DSR ++P + I G +DGHDFI +A + GA V+ D+ S + Sbjct: 23 ITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENGASAVISGRDIDDS----EHIII 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +A R K ++ ITGSVGKT+T++M+ + KT G+YNN Sbjct: 79 KVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVIKQQYKTLKTEGNYNNA 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ D + E+GM+HL E+ L+ + P I+ IT + AH+ E I Sbjct: 139 IGLPLTILRLK-DEQVMVLEMGMNHLKEMEELSMIACPDISAITNVGTAHIGELGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EI G+ + +N D+ ++ +G + G DF+ Sbjct: 198 LKAKMEIINGMSDNSMLVINNDNDMLSTVE-----VGRLNLIRVGIDNGVDFKANNVVLS 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E S + +GK V G H N L+ + I L + IK + F R Sbjct: 253 DEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAIGLQLDISPEQCIKGVKEFELTRNR 312 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 N TLID +YNA+ SMK++I VL+ + R+IAVL DM E+G+ S+ Sbjct: 313 MDIVELKNN---ITLIDGTYNASEDSMKSSIDVLATYTR----RKIAVLADMLELGKYSE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDG 444 H ++ ++ I + G + DA ++ + Y + + + ++ + Sbjct: 366 QLHRNIGMYVAKNKIDILVAVGKESKYIIDAASKAGVKQICYCNSNEEVINYLGKIIQSN 425 Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468 DV++ K SN ++ L+ E+ Sbjct: 426 DVILFKGSNGMKLGNVVALMKEKL 449 >gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 466 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 212/457 (46%), Gaps = 54/457 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ D+R++ P + F A++G +DGHD+ A++KGA V+ N D + IP Sbjct: 30 VYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRDQGYHLQD--IPQL 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA R + +IA+TGS GKTTTKE++ LS+ +YNN Sbjct: 88 QVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAAVLSTQGNILKTQANYNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL + + D+ + E+ M G+I LT + RP I VIT + AH+ + I Sbjct: 148 IGVPKTLLELDSNHDYAVIEMAMRGSGQIALLTQIARPTIGVITNVGTAHIGLLGSEDAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ + T LN+D+ + T + + + F L Sbjct: 208 AKAKCELLAQMPDTSMAILNHDNQRL-----------MDTAATVWQGETLTFGLNGGD-- 254 Query: 267 SEQSWMEVQLQGKSMEVVH---HGI-------GYHMAQNMLMTLGIVSILTADVDTAIKA 316 +QGK +++ GI G H A N L L + L D K Sbjct: 255 ---------VQGKLIDLFRLMVDGITFPLPLPGEHNALNYLAALAVAKHLQIDWTPLRKG 305 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 LSV GR +RY + ++DE+YNA +M AA+ +L+Q R IA+LG Sbjct: 306 LSV-QMSGGRSQRYELPND---IVILDETYNAGFEAMIAALHLLAQTPGK---RHIAILG 358 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----ALPRSIHVHYSETM-- 430 M E+G+ S+ H + + + V+++ LKD A+ R I SE Sbjct: 359 SMKELGDHSEQLHQQVGQKAQQLQLDAVFIT------LKDREAEAITRGISALPSEGFAE 412 Query: 431 -DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 D L + + GD ++ K+S S G R+++ E Sbjct: 413 DDALVQHLTEFVQPGDRLLFKASRSVGLDRVLHQFRE 449 >gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 454 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 210/449 (46%), Gaps = 35/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ + P Sbjct: 29 IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA + + +IA+TGS GKTTTK+M+ LS+ KTY G+YNN Sbjct: 79 WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +PHI V+T I AHL F E+I Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + D+ + +S + + FG A+ ++ ++ Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + + + G + A N ++ + +L D ++AL R Sbjct: 251 KESLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S+I + G++IAVL DM E+GE S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437 H + LS + + G + L + V+Y + D + + Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Q L D +++K SNS +++ L E Sbjct: 426 QKVLQPADQILLKGSNSMQLAKVVEALEE 454 >gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] Length = 460 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 228/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I + DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNMKEGNLFVPIIRMN-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 EEIA AK EI +GL G N D+ LL + LGI++ GK N F Sbjct: 203 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 259 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 VQL G ++ H I Y H N+ T+ GI + T Sbjct: 260 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NANP+SMKAAI L +++ + Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 +++ V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ H Sbjct: 361 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 419 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 420 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 456 >gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] Length = 455 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 21/454 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++A+ G + + + ISIDSR++ + F + G D H F+ A + GA Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + G ++ + V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 66 ASLTSEHDTCPEG-ITGALIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ +T+ ++N+ +GVP+T++ + + G+ ELGMS GE+ + + R Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDT 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I H+ N E I K I +G++K GT+FLN D+ ++AK G +T Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +G N ++ + ++ + VV +G H N L L + Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A +AL F + R + Y +G T+ID++YNA+P SMKA I VL+ ++ Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIY----EKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 RRIAVL DM E+GE + FH ++ L + V G AL + R + Sbjct: 357 --KRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYG----ALAKEIARGVEGKV 410 Query: 427 SETM------DGLFLFIQSSLVDGDVVVVKSSNS 454 T+ + + +++ L +GD V+ K SNS Sbjct: 411 KTTVFEEEQKEEMTEYLEKLLREGDAVLFKGSNS 444 >gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 452 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 134/443 (30%), Positives = 212/443 (47%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R A F A+KG +D HDF+ A+ G ++V+ + + +P V Sbjct: 27 VTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVSKRL-----PVELPQVVVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R +S A I+A+TGS GKT+ KEM L +T G++NN IGV Sbjct: 82 DTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTAAILRECGETLYTTGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + ELG +H GEI + + LVRP A++ +A AHL F + +A A Sbjct: 142 PLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268 K EIF GL GT +N D + + + HA KTI+ F + ++DF ++ Sbjct: 202 KGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---KTIWRFSPEQADSDFYAANVTISAQ 258 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + ++V+ G H N L + + A + + LS GR Sbjct: 259 GTHFTLHSPQGDVDVILPLPGRHNIANALAASALALSVGAPLSAVRQGLSTLKAVPGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + AL+ L+D+SYNAN SM AA VL+ + G R+ ++GDM EMG + Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGMP----GYRVMIVGDMAEMGAEAAEC 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444 H + + I V +G + DA + H+++ L L Q + Sbjct: 372 HRQVGNAIRHAGIDKVLSTGSLSHGISDA--SGVGEHFADKAALGARALELLAQHQHI-- 427 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 ++VK S S +++ +L E+ Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449 >gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] Length = 455 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 234/477 (49%), Gaps = 43/477 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L F ++++AI G I I N +S D+R I F A+KG +++ +++I+ A Sbjct: 2 ELLKFEEIVEAIHG-KIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEAS 60 Query: 62 QKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +KGA L +V+ ++ + G L + V V++ AL LA R + II ITGS GK Sbjct: 61 KKGANLCIVD-EIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK++ AL S K + G++NN IG+PL + + +D + E+GMS EI L Sbjct: 120 TSTKDLTAAALGSKFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGMSDFSEIHRLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP IA+IT I +H+ N E I AK EI + K + +N ++ + + + Sbjct: 180 KVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNENDLLKDISSND 239 Query: 240 HALGIKTIYSFGKSKNA-----DFQLRKWKQC--SEQSWMEVQLQGKSMEVVHHGIGYHM 292 + + I ++ G + A D ++ C E + + GK H Sbjct: 240 YNI-INIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGK-----------HN 287 Query: 293 AQNMLMTLGIVSILTADVDT---AIKALSVFHPKEG--RGKRYRCALNQGFFTLIDESYN 347 N L+ + +L + D IK LSV + +G++ FT++D+ YN Sbjct: 288 ILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLDIVKGEK---------FTIVDDCYN 338 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P SM+AAI V++ I R+IAVLG M E+G S FH ++AE N+ + Sbjct: 339 ASPDSMRAAIDVMNTIKGK---RKIAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITV 395 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G A K+ ++ ET++ FI +++ D+V+VK+S S F ++N L Sbjct: 396 GEFNEAYKEGFNKT--SKQFETIEDAAEFITNNINKDDIVLVKASRSMKFEYIVNKL 450 >gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] Length = 497 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/418 (32%), Positives = 195/418 (46%), Gaps = 49/418 (11%) Query: 7 FHDLLQAIQGHSIG---IVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 +LL +Q I +P + N + DSR + P F A+ G DGH F+ Sbjct: 4 LDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLAD 63 Query: 60 AVQKGAGLVVV----------NTDMVASIGSLSIP---------------VFGVDDVLGA 94 V +GA +V N D VA L P + VDD L A Sbjct: 64 VVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFA 123 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L ++AV R T+I ITGSVGKT+TKE++ S +T S+N+ + +P TL Sbjct: 124 LQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLL 183 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + D + E+GM GEIRFL L RP I ++T + P+HL IE IA+AKAE+ Sbjct: 184 GLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELP 243 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271 E L G LN DD + +++ A + ++G + NAD +L S + Sbjct: 244 ESLPADGWCILNADDHRVAAMASRTAA----RVLTYGYAPNADVRL--LDVVSHGLYGIE 297 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + V +G+S + IG H A L + +L D D + L + G R R Sbjct: 298 LTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLR----EPGEQLRLR 353 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 Q T+ID++YNA P S AA+ VL++ +GRRIAVLG+M E+G S H Sbjct: 354 IVPGQHGTTIIDDTYNAAPLSTIAALQVLAET----KGRRIAVLGEMLELGAASVEGH 407 >gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] Length = 451 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 220/452 (48%), Gaps = 39/452 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 +NG++IDSR I F KG + DGH F+ A++ GAG T++ I P Sbjct: 26 INGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELSEDIEG---P 82 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V+D L AL LA A +IA+TGS GKTTTK+M+ L++ K G+YN Sbjct: 83 IIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQGNYN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLT+ + D + I E+GMS EI L+ + +P IAVIT I +H+ + E Sbjct: 143 NEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPDIAVITNIGESHMQDLGSRE 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+EI GL++ GT + D+ LLK L + S G + Sbjct: 203 GIAKAKSEITIGLKENGTFIYDGDEP---LLKPHLEQLNKARLISVGLGNSNTL------ 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 C +++ +G + + +G H +N + + I L +T ++ Sbjct: 254 VCHVD---DIETEGIAFTINDKESFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNIN 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R +R++ N T+I+++YNA+P SMKAAI LS + EGR+I +L D+ Sbjct: 311 HVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILILADV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHV-HYSETMDGL 433 E+GE SQS H ++ L+ I ++ G + ++ +P + H SE + L Sbjct: 364 LELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARFIFNIGQNEVPTAQHFDDKSELIKEL 423 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ + D ++VK S ++ L+ Sbjct: 424 KIIVK----ENDKILVKGSRGMKLEEVVEALI 451 >gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] Length = 491 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 216/470 (45%), Gaps = 52/470 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 I P V DSR + A G DGHDFI A ++GA L +V + G+ Sbjct: 23 ITPSAVVT----DSREATEGSLYVAKPGESADGHDFIGAAFERGAVLALVEREGPDGAGA 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLR---------SKATIIAITGSVGKTTTKEMLTIALS 131 P V D + A+ LA + R ++ T+I ITGS GKTTTK++L LS Sbjct: 79 -PYPAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVIGITGSAGKTTTKDLLAGILS 137 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + T + GSYN +GVPLT+ + D + + E+G + +G IR+L +VRP I V+ Sbjct: 138 AEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGATGIGHIRYLADMVRPSIGVVLG 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 I AH F G++ IA AK E+ E L +GT +N DD + +++ A + F Sbjct: 198 IGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDDGRVAAMTSRTTA----NVLGFS 253 Query: 252 KSKNADFQLRKWK----QCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D + + + E +L + + +V IG H N+L G Sbjct: 254 AQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRSRLIGAHHVTNLLAAAGAA 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +LS R + R G T+I+++YNANP SM+AA+ L+ + Sbjct: 314 YAAGVTGERIAASLST-QTAASRWRMERTERPDG-VTIINDAYNANPESMRAALRTLADL 371 Query: 364 SPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G GRR AVLG M E+G+ S H+ + + NIS + + G RS+ Sbjct: 372 ---GRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVVGREA--------RSL 420 Query: 423 HVH------------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 +V ++E+ D + +Q L GD+V+ KSSNS G L Sbjct: 421 YVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVLFKSSNSVGLRHL 470 >gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] Length = 453 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 213/445 (47%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 ISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEHELDADCSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + K +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F IE + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL + +N D + E K L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKT---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ V G+ ++V IG H N L + + A + L+ Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIAHGLAHLSKV 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + TLID+SYNA+ +MKAA+ +L S R +LG+M E+G+ Sbjct: 315 KGRVDLTHL---RDDITLIDDSYNASVPAMKAAVDLLGSFS----AVRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + ++ V G + D + + M + I+ Sbjct: 368 ESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGR 427 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 428 AQVLLVKGANSAGMSKIAAALKEKF 452 >gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] Length = 467 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/456 (30%), Positives = 220/456 (48%), Gaps = 49/456 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R++ P EAF A++G +DGH F+ A+ +GA +V+ D A + ++P+ Sbjct: 30 VIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQGAVCAIVDADFTAD--NPNLPLL 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A +A R + II +TGSVGKTTTKE++ L + + +YNN Sbjct: 88 TVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVLGTQGNVHKTQANYNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL ++ ++ + E+ M GEI LT + RP I +IT + AH+ + I Sbjct: 148 IGVPKTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPTIGLITNVGTAHIGRLGSEQAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ + + LN D L+ + +T+ ++G + D Q Sbjct: 208 AEAKCELLAEMPQNSVAVLNCD--HHRLMDTAATVWSGETL-TYGL-EGGDLQGELIDAH 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT------ADVDTAIK-ALSV 319 + L+ + +++ GYH A N L L + I+ ++ T ++ LSV Sbjct: 264 T--------LRVEGLDLPLPLPGYHNASNFLAALAVFKIIQGQGLSPTELYTPLQTGLSV 315 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P EGR KRY + + ++DE+YNA SM AA+ +L + R IAVLG M Sbjct: 316 QLP-EGRAKRYELSND---IVILDETYNAGLESMIAALKLLMETPGQ---RFIAVLGTMK 368 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL--------------SGFHVLALKDALPRSIHVH 425 E+GE S FH + ++ N+ +++ G V+ + +IH Sbjct: 369 ELGERSLEFHQKVGKMAQELNLDALFILADAEEAIAMATGAKGLSVVEIGKMEVENIHNQ 428 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +E L FIQ GD ++ K+S+S YR++ Sbjct: 429 IAEQ---LIEFIQP----GDRILFKASHSVELYRVV 457 >gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 436 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 201/399 (50%), Gaps = 29/399 (7%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + + G + +V +N IDSR + + F +KG + DGH +I A++KGA Sbjct: 6 LKKIVNGEFLNLVKNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYF 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + G L V D AL ++ R + + +I ITG+ GKT+TKE++ Sbjct: 66 SEKPLNFKNGIL------VKDTYQALVEVGKHKRNQVRV-VIGITGTSGKTSTKELMNFV 118 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS++ TYA G+YNN IGVPLTLA +P DF I E+G +G+I +L +V I+V+ Sbjct: 119 LSNLASTYATQGNYNNEIGVPLTLANIPESTDFAIIEMGAGKVGDIDYLGKIVNQDISVL 178 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ H+ F E + K EIF G NY EL K + K + Sbjct: 179 VSVGHGHVEKFGSFENVIKGKGEIFN----CG----NYSVLPSELKKFYNP----KNPIT 226 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G ++ D +++ K + + ++ + +E+ + +N+ G++ L D Sbjct: 227 YG--EDGDIEIKDIKIVKDGTVGIIKYKNDKIELKIPVYNIGVFKNIGAVAGVLYHLGYD 284 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ L F RG+ + G FT+ID+SYNANP S+K AI +L+ + EG Sbjct: 285 PIKNLEVLKDFKSSSQRGEIIKI----GNFTIIDDSYNANPLSVKNAIEILNSM----EG 336 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +I VLGDM E+GE SQ H ++ ++L+ I ++ L G Sbjct: 337 FKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYG 375 >gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 134/452 (29%), Positives = 223/452 (49%), Gaps = 20/452 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 P G SIDSR++A + FFA+KG +DGHDF+ A+ +GA VV+ A + L Sbjct: 21 PARPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGAVGAVVSRARAAELLPLI 80 Query: 82 -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + VDD L AL +LA A R ++ +TGS GKTTTKE + L + + Sbjct: 81 DHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAVLGAGYRVLKSQ 140 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN+ G+PL L R+ + + + E+GM+H GEI L + P V+T + AH+ NF Sbjct: 141 GNLNNNFGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIAMPDWGVVTNVGKAHVENF 200 Query: 201 S-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + GI +A AK E+ + L G FLN DD++ H + FG+ A + Sbjct: 201 TDGIAGVARAKYELVQALPAEGIAFLNCDDAYVSQFGRDFHG----RVILFGRGPCAHLR 256 Query: 260 LRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + +E + + V +G+ + H +G H N L L + ++ +AL Sbjct: 257 VEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALAVGLAAEIPLEIGARALE 316 Query: 319 VFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 E RG+ +R A +++++ YN+NP ++KA I+ L + + R I V G Sbjct: 317 SLRADEKRGQIIPWRGA------SIVNDCYNSNPEALKAMIATLMGMPGN---RHILVAG 367 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 +M E+G + + H E + + V + G + A Y ET + + Sbjct: 368 EMLELGAEAPALHAACGEAAAAAKVDIVVGVRGAASQIVDAARRAGADAVYVETPEDAGI 427 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++++L +GD V++K+S R +++L E Sbjct: 428 WLKANLREGDAVLLKASRGVRLERALDVLQAE 459 >gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium cellulovorans 743B] Length = 395 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 197/395 (49%), Gaps = 29/395 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A +G+ I P+ N +SID+R + + AIKG ++DG+DF++ A+ KGA Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64 Query: 66 GLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +++ L+ + V++ AL +LA R + +I +TGS GKT+TK+ Sbjct: 65 ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ ALS K + G++NN IG+PL + + D + E+GMS L EI+ L+ + RP Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I +H+ N E I AK EI K + +N+DD + + + L I Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-I 243 Query: 245 KTIYSFGKSKNADFQ----LRKWKQCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K S KN D + + K C +S + + GK H N L Sbjct: 244 KA--SISDDKNIDLKGESLVLKEDSCEFKLNESKFYIPMPGK-----------HNISNAL 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L + K F E R N+G T+I+++YNA+P SMKAAI Sbjct: 291 LAIACARELGVEDQLINKG---FLNIEATSMRLDIEKNKG-ITIINDTYNASPDSMKAAI 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 V+ + RRIAV+G M E+GE S +H ++ Sbjct: 347 EVMKNLKGK---RRIAVVGTMKELGENSFEYHKEM 378 >gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 455 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 21/454 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++A+ G + + + ISIDSR++ + F + G D H F+ A + GA Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + G ++ + V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 66 ASLTSEHDTCPEG-ITGALIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ +T+ ++N+ +GVP+T++ + + G+ ELGMS GE+ + + R Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDT 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I H+ N E I K I +G++K GT+FLN D+ ++AK G +T Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD---GCET 241 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +G N ++ + ++ + VV +G H N L L + Sbjct: 242 SF-YGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A +AL F + R + Y +G T+ID++YNA+P SMKA I VL+ ++ Sbjct: 301 HVPLADAAEALKTFDGFKNRQQIY----EKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 RRIAVL DM E+GE + FH ++ L + V G AL + R + Sbjct: 357 --KRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYG----ALAKEIARGVEGKV 410 Query: 427 SETM------DGLFLFIQSSLVDGDVVVVKSSNS 454 T+ + + +++ L +GD V+ K SNS Sbjct: 411 KTTVFEEEQKEEMTEYLEKLLREGDAVLFKGSNS 444 >gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 420 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 215/447 (48%), Gaps = 50/447 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI DSR + + FFA+KG +++G+ F A++ GA +V++ +++ ++ + VF V Sbjct: 13 GICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLD-EIIENLNYNNSDVFFV 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +VL L A R + TII ITGS GKTT KE+L LS T+A G+YNNHIG Sbjct: 72 KNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGNYNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + D I E+G +H+GEI+ L + P IT AHL F GIE + Sbjct: 132 VPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEGFGGIEGVIK 191 Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADFQLRKW 263 K+E++E L+K +I F+N +DS L S + G+ Y G Sbjct: 192 GKSELYEHLDKNNSISFVNPNDS-IALKNCNSQNIEFTDGVNFFYKSG------------ 238 Query: 264 KQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 L G S E++ + G + N+L + I + K ++ + Sbjct: 239 ------------LLGVSFGNEEILTNLTGSYQENNVLAAITIGRNFELEDSKIAKGIANY 286 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---VLSQISPHGEGRRIAVLGD 377 P+ RG+ ++ N T+ ++YNANP SM+A++ L + PH + + G Sbjct: 287 IPQNNRGQIFKTGKN----TIFLDAYNANPTSMEASLRNAVNLYKKMPH-----VYIAGG 337 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 + E+GE S+S H + E+ I + W G + +P + +Y +T L + Sbjct: 338 LLELGEYSKSQHQRMIEIFQELEIENAWFIGKQF--EESQMPEK-YYNYRDTAQALEA-L 393 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + G+ + +K S S L++ L Sbjct: 394 RGKQIHGNFIWIKGSRSFALEALLDEL 420 >gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 455 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 216/447 (48%), Gaps = 31/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M++ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPNDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G++ G I + DS + ++ + + FG + + + ++ S Sbjct: 202 KMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFGDHQELNVTDIREEKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I+AL R + Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTE- 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G S + H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLFIQS 439 L + LS I + G + L + P HV + + + + +Q Sbjct: 369 SQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFEDMVRQVQQ 427 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 L D +++K SNS G +L+N L+E Sbjct: 428 LLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 195/388 (50%), Gaps = 33/388 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I P FFA+KG +++G+DF L A+ +GA VV+ M I + V Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL A + R + +TGS GKTT KE++ LS+ KT+A G+ NNH+GV Sbjct: 68 DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M D + I E+G +H EI L + +P I IT AH+ F G+E I Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187 Query: 210 KAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ E + +N+DDS + K K H + FG SK WK S+ Sbjct: 188 KSELYDFAFEHQTQVMVNFDDS-LQSEKTKDH-----NRFGFGHSKGG----VTWKSTSD 237 Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNM--LMTLGI-VSILTADVDTAIKALSVFHPK 323 + +QL+ G S + G+ N+ TLG+ + D+ TA++A + P Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDIKTALEA---YVPS 294 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + N ++ ++YNANP SM +I + G + +LGDM E+G+ Sbjct: 295 MNRVEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGK 346 Query: 384 LSQSFHIDLA-EVLSLYNISHVWLSGFH 410 S+ H + EV+SL + L G H Sbjct: 347 ASKVEHEAIVREVISLDMAQNCILIGEH 374 >gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 452 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 215/447 (48%), Gaps = 24/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I F A+ G +D HDF A GA ++V+ + + +P Sbjct: 24 IESVSTDTRTIESGSLFVALVGERFDAHDFAGQAASAGASALLVSKAV-----DVQVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL KL + +AITGS GKTT KEM+ ++ + G++NN Sbjct: 79 LVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKTTVKEMVASIMTQKGQVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + DF + ELG +H+GEI + T LV P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSQPEDDFAVIELGANHVGEIAYTTQLVNPDVAMVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWK- 264 AK EI++GL+ +N D + E + L KT+ +F S N A+++ R Sbjct: 199 KRAKGEIYQGLKPGSVAIVNLDSNGGEHWR---EVLSDKTVKTFSLSDNSAEYKARNVTM 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ +Q S +V IG H N L + L A + L+ + Sbjct: 256 NVNGEASFTIQTPETSFDVKLGIIGQHNVSNALAATALSLELGATTEMIASGLANLSKVK 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + + LID+SYNA+ +MKAA +L+ +G R VLG+M E+GE Sbjct: 316 GRVETVDLTDS---IRLIDDSYNASVPAMKAAADLLNSF----DGVRWLVLGNMAELGEE 368 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S + H + E + + HV G A+ D +H+ +T D + FI+ L Sbjct: 369 SLALHRQVGEHAAPFKFEHVLTFGADTKAISDVCQG---MHF-DTHDHMIEFIEQQLSQQ 424 Query: 445 D---VVVVKSSNSCGFYRLINLLLEEF 468 ++VK +NS G ++ L E + Sbjct: 425 TGPHTLLVKGANSAGMSKIAAALKEMY 451 >gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 460 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/457 (29%), Positives = 226/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGHD++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VDD L AL +LA R +I ITGS GKTT K+++ L S + + Sbjct: 83 PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +AVIT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 +EIA AK EI +GL + G N D+ K+ ++ KT FG+ D Sbjct: 203 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDL- 257 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 VQL G ++ H I Y H N+ T+ GI + T Sbjct: 258 ----------FPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFSKVPT 307 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NA+P+SMKAAI L +++ + Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY- 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 ++I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ H+ Sbjct: 361 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 419 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 420 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIV 456 >gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 467 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 179/383 (46%), Gaps = 15/383 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S DSR+I P E + + G +DG FI KGA +++ D ++SIP Sbjct: 35 IKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKECEDKGAEAFIID-DPTKINKTVSIPYV 93 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LA A R +I ITGS GKTTTK++L LS KT G+ NN Sbjct: 94 RVADTKKALQDLATAYRKELSCKVIGITGSNGKTTTKDLLYKILSEKYKTQKTCGNLNNE 153 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T+ + D + I ELG + G+I + +V+PHIA+IT I AHL N I Sbjct: 154 IGVPKTVLSLDPDTEVAIIELGTDNFGDISLTSRMVKPHIAMITNIGDAHLHNLKTRSGI 213 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQ 265 AK EI EG+E G N DD +K + IK + SFG+S ADF++ K Sbjct: 214 LKAKLEILEGMEDDGIFIYNIDDP---TMKEEIPTYDIKQKVLSFGRSDKADFKIVFEK- 269 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S S + + EV +G H N + I +L + + + Sbjct: 270 -SPTSIIRFSHENDHFEVPL--MGEHNIYNAAAVVMISEMLGLNKEMIDAGFMEVKSSQN 326 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + C F ++D+SY +NP S+ A + + G R+I L DM E+GE Sbjct: 327 RTELLEC----DGFDILDDSYKSNPQSLLAGLETTYML--EGYKRKIVCLADMLELGENE 380 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 H ++ + L I + G Sbjct: 381 VDLHREVGKKLDSKKIDYALFYG 403 >gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] Length = 453 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 219/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF+ AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] Length = 456 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 224/476 (47%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ ++ + + P + DSR I + F +KG DGHDFI A + G Sbjct: 4 TFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VA++ + P VDDVL AL +LA + K + A+TGS GKTT Sbjct: 63 A---------VATLSEKELDDYPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + Sbjct: 114 TKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTI 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + ++T I AHL F EIA K +I G+++ G + + D + L ++ + Sbjct: 174 AQPKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANGMKEGGLLIVPADKIINDFLPSQQN- 232 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG + D L K ++ + E ++++ G + A N ++ Sbjct: 233 -----VVRFGPDE--DIFLTKLEERKDSLTFETNFLDNAIDL--PVTGKYNATNAMIAAY 283 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D KA + R + ++ A N ++ + YNANP +M+ + S Sbjct: 284 VALKEGVTQDKIQKAFATLELTRNRTE-WKKAKNGA--DILSDVYNANPTAMRLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDA 417 I + +GR++AVL DM E+G S+ H + L+ +S ++L G + AL K+ Sbjct: 341 TIPFNEKGRKLAVLADMKELGADSKQMHGAMITSLNPEILSEIFLYGEDMAALFAYAKEI 400 Query: 418 LPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P HY + L ++ +L D +++K SNS L+ L E Sbjct: 401 FPPG-KAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEELENE 455 >gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri VA-6] Length = 452 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 215/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIARTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H+ + E I V G A+ A + H+++ L ++S + + Sbjct: 369 EDCHVQVGEAAKAAGIDRVLSMGKQSHAISTA--SGVGEHFADKT-ALITRLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 156/497 (31%), Positives = 229/497 (46%), Gaps = 53/497 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+QG I + DSR I F AI G DGHD++ Sbjct: 1 MMPM-SLEEIAQAVQGRLIAGTAAIDTPVATSTFTDSRQIVEGSVFVAIAGERVDGHDYV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV---LGALNKLAVAAR--LRSKATIIA 112 +GA +V+ + I +P V+D LGAL K + R L + T+I Sbjct: 60 SKVGAQGAVAAIVDHE----IDGAGVPQIVVEDTVLALGALAKHNIERRRALETPFTVIG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+++ L+ I T A +GS+NN IG+PLT ++ + F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIRGLVPGGLSVLNANDEHV 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSE---QSWMEVQLQGKSMEVVHH 286 A A+ + FG +N D + Q C E S++ G+ EV Sbjct: 236 ----AAMSAIAPGDVMWFGLPQNNDGKPAISAQHVHCDELDHPSFILDNGDGEHAEVTLG 291 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALN-----QGF 338 G H N L + L DV +A+ ++ P +R A++ + Sbjct: 292 ICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISP-------HRMAVSIVNKQETS 344 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVL 396 FTLID+S+NANP SMKA + L + E + R+AVLG M E+G + H+ + Sbjct: 345 FTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHVGIGRYA 404 Query: 397 SLYNISHVWLSGFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSLVD-- 443 + + G A DAL ++ HV + +D + V+ Sbjct: 405 LEGGVDALLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTRLAVEHP 464 Query: 444 GDVVVVKSSNSCGFYRL 460 G VV++K S++ G L Sbjct: 465 GAVVLLKGSHASGLSAL 481 >gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychromonas ingrahamii 37] gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychromonas ingrahamii 37] Length = 489 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 135/413 (32%), Positives = 196/413 (47%), Gaps = 49/413 (11%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ +A G I P+ N IS D+R I + F A++G YD H F+ AVQ+G Sbjct: 18 TLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQG 77 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 AG ++++ + + P V D AL LA R + + AITGS GKTTTK Sbjct: 78 AGALLIDQKKRSDL-----PCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTK 132 Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 E+L+ L + + A G++NN IG+PLTL R+ + + ELG +HLGEI + Sbjct: 133 ELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELGANHLGEIAYTA 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-------- 231 L +P +A+I + PAHL F ++ +A AK EI+ L TG +N D F Sbjct: 193 QLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLDSDFASEYLTQL 252 Query: 232 ---------FELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 F K+H I+ S GK A F+L Q+ + +QL Sbjct: 253 KKLNRQVFTFSKESEKAHVSASNIIFSSLGK---ASFRLNVMLNRDPQA-ISIQL----- 303 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + G H N L + L ++ L + EGR LN+ TL Sbjct: 304 ----NLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRE--LNK-LVTL 356 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 ID++YNANPAS+K AI +L Q + + VLGDM E+G+ S+ H + E Sbjct: 357 IDDTYNANPASVKVAIDLLQQYASS----HLLVLGDMAELGDFSEHEHFLIGE 405 >gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 195/388 (50%), Gaps = 33/388 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I P FFA+KG +++G+DF L A+ +GA VV+ M I + V Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDETM-----DQDIRIIQVS 67 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL A + R + +TGS GKTT KE++ LS+ KT+A G+ NNH+GV Sbjct: 68 DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M D + I E+G +H EI L + +P I IT AH+ F G+E I Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187 Query: 210 KAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ E + +N+DDS + K K H + FG SK WK S+ Sbjct: 188 KSELYDFAFEHQTQVMVNFDDS-LQSEKTKDH-----NRFGFGHSKGG----VTWKSTSD 237 Query: 269 QSWMEVQLQ--GKSMEVVHHGIGYHMAQNM--LMTLGI-VSILTADVDTAIKALSVFHPK 323 + +QL+ G S + G+ N+ TLG+ + D+ TA++A + P Sbjct: 238 NEFASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDIKTALEA---YVPS 294 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + N ++ ++YNANP SM +I + G + +LGDM E+G+ Sbjct: 295 MNRVEWRKTQYN----AVLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGK 346 Query: 384 LSQSFHIDLA-EVLSLYNISHVWLSGFH 410 S+ H + EV+SL + L G H Sbjct: 347 ASKVEHEAIVREVISLDMAQNCILIGEH 374 >gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 483 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 154/493 (31%), Positives = 237/493 (48%), Gaps = 50/493 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ + ++ +A+ G IG N +S DSR P F AI+G H DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDADSESRSTNTVS-DSRQAGPGSVFVAIRGEHVDGHDFVA 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAI 113 +GA + +V+ + + S +P V D + AL +LA +R + II + Sbjct: 59 KTAGQGATVAIVDHE----VESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+G Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI- 288 + L + FG + + ++R +++S + V G VH GI Sbjct: 235 PMA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIP 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLID 343 G H N L + +T + L+ H +R AL+ +G FTLID Sbjct: 290 GRHNVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLID 345 Query: 344 ESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +S+NANP SMKA ++ L + + +G+ R+A+LG M E+G + H + + Sbjct: 346 DSFNANPDSMKAGLNGLKAWNSN-DGKDPFRVALLGAMLELGADETALHTSIGTYAAELG 404 Query: 401 ISHVWLSGF----HVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVV 447 I + G H+ AL AL VH + + L + + + D VV Sbjct: 405 IDAIIAVGSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARNHPDA-VV 463 Query: 448 VVKSSNSCGFYRL 460 ++K S++ G L Sbjct: 464 LLKGSHASGLSAL 476 >gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 454 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 210/449 (46%), Gaps = 35/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ + P Sbjct: 29 IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA + + +IA+TGS GKTTTK+M+ LS+ KTY G+YNN Sbjct: 79 WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +PHI V+T I AHL F E+I Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + D+ + +S + + FG A+ ++ ++ Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + + + G + A N ++ + +L D ++AL R Sbjct: 251 KESLTFMTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S+I + G++IAVL DM E+GE S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437 H + LS + + G + L + V+Y + D + + Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Q L D +++K SNS +++ L E Sbjct: 426 QKVLQPADQILLKGSNSMQLAKVVEALEE 454 >gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 470 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 125/411 (30%), Positives = 193/411 (46%), Gaps = 17/411 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + T L+ I G ++ ++ + D+R+I P + F A++G +D +D + A Sbjct: 1 MSAMMTLSHALKLIPGATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+ + + AS +P V++ AL LA R + +IA+TGS GKT Sbjct: 61 FAKGAAAVLCHAGLTASAYPAGLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKT 120 Query: 121 TTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T +M+ L + A +G++NN IGVPLTL RM + ELGM+H GEI Sbjct: 121 TVTQMIASILHAHAPDGAALATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAV 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P +A++ HL IE +A + L +TGT DD + L + Sbjct: 181 LAAMAQPTVALVNNAQREHLEFMHTIEAVARENGSVLSSLPETGTAVFPADDDYAPLWRE 240 Query: 238 KSHALGIKTIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293 S + + +F + ADF +R W+ + +W V + I G H Sbjct: 241 LSAG---RVVATFARGDAGADFVVRSASWQ---DGAWQVVAGTPQGELRYRLAIAGRHNV 294 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L T + L F P +GR + + FTL+D++YNANP SM Sbjct: 295 KNSLAAAACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSM 354 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +AAI VL+ + G R+ V+GDM E+GE +FH + I HV Sbjct: 355 RAAIDVLADLP----GPRLLVMGDMGEVGEQGPAFHAEAGRYARDAGIEHV 401 >gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] Length = 460 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 227/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 EEIA AK EI +GL G N D+ LL + LGI++ GK N F Sbjct: 203 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 259 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 VQL G ++ H I Y H N+ T+ GI + T Sbjct: 260 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NANP+SMKAAI L +++ + Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 +++ V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ H Sbjct: 361 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 419 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 420 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 456 >gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] Length = 468 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 134/445 (30%), Positives = 215/445 (48%), Gaps = 16/445 (3%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIP 84 GI+ D+R + + F A++G +DG DF A++ GA V+ V+ + +S Sbjct: 30 GITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMSGA 89 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V GV D L A ++A A R++ ++A+TGS GKTTTKE+ ALS +YN Sbjct: 90 VIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAANYN 149 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLTL M + + E+GM G+I L + P + ++T + H+ IE Sbjct: 150 NEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLGSIE 209 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AKAE+ + G + LN DD+ ++A++ A G++ I ++G AD + + + Sbjct: 210 NIARAKAELVAAIAPGGIVILNADDARVVAMRAQA-ADGVR-ILTYGIRAEADIRAQALR 267 Query: 265 Q-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 C+E +M V G+ + +G H N L L L LS P Sbjct: 268 SACNETRFM-VTYGGERHDYAVPLLGRHNVYNALAALAAGFALGLSPQEMQAGLSRLAPP 326 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + + G +T I+++YNA+PASM+AA+ +++ P GRRIAVLGDM E+G Sbjct: 327 KMRYEVHHV----GAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGA 379 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442 S H + + + V G + +A + ++ T + ++ L Sbjct: 380 ASAEGHRSVGRTAAAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLA 439 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 DGD V+ K S ++ L E Sbjct: 440 DGDTVLFKGSRGMRMEHIMELAAGE 464 >gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 454 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 209/447 (46%), Gaps = 35/447 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ + P Sbjct: 29 IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVAGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA + + +IA+TGS GKTTTK+M+ LS+ KTY G+YNN Sbjct: 79 WVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +PHI V+T I AHL F E+I Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + D+ + +S + + FG A+ ++ ++ Sbjct: 199 AEGKLQIVDGMDSDG-ILIAPADTIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + + + G + A N ++ + +L D ++AL R Sbjct: 251 KESLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S+I + G++IAVL DM E+GE S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSET-----MDGLFLFI 437 H + LS + + G + L P ++ +T D + I Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPIGKVYYFKKTADENQFDAMLETI 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 Q L D +++K SNS +++ L Sbjct: 426 QKVLQPADQILLKGSNSMQLVKIVEAL 452 >gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 465 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 209/452 (46%), Gaps = 41/452 (9%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L QA QG +P+ + I DSR +AF A+KG +D HDF+ + Sbjct: 14 WTAEQLQQATQGEWFRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G + +V + + I L V D AL L R +++ +IA+TGS GKTTT Sbjct: 74 GCQIAIVERPIDSDIAQLI-----VKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + F + ELG +H GEI + ++LV Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRPEHQFAVMELGANHQGEIDYTSNLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P++A I I AHL F G + I AK+EI+ + GT + DD F ++ + Sbjct: 189 QPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILPDGTAIVPSDDDFTATIRQNA--- 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G I SFG+ D + + + + + S V G H QN Sbjct: 246 GNHPILSFGEG--GDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS 361 + +D ++ L ++ +G + R Q + ID++YNANP SM+AA VL Sbjct: 304 ALAIGIPLDDIVQGL-----EQAQGAKGRLNFIQHQNYLFIDDTYNANPTSMRAAAKVLL 358 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------------- 408 Q +G ++ V+GD+ E+G+ S H DL L + H+ + G Sbjct: 359 Q----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVVVGEFAEAAQQGSGCA 414 Query: 409 --FHVLALK-DALP---RSIHVHYSETMDGLF 434 H A + DALP + H ++M LF Sbjct: 415 ENLHAFATQADALPFLINLVQTHQPQSMSFLF 446 >gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] Length = 451 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/453 (29%), Positives = 228/453 (50%), Gaps = 47/453 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 24 MHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 74 PKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTVKDIIGGILSSTYRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 193 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 EEIA AK EI +GL G N D+ LL + LGI++ GK N F Sbjct: 194 LGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLGIESKSFGGKYTNDLFP 250 Query: 259 ---QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 QL ++ K + + +V L GK H N ++ + + ++ Sbjct: 251 TNVQLDEYGVHFKLNNTKIQYDVPLHGK-----------HNILNAIVGIAVGQFYKVPIE 299 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +AL + + R++ + FT+I++++NA+P+SMKAAI L +++ + ++ Sbjct: 300 KIQEALQQINITQ---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--EKK 354 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ H ++ D Sbjct: 355 IIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYGALSEIVAEEARKNYHTEKVQSFD 414 Query: 432 G---LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + I + DVV++K S ++ Sbjct: 415 NKDEIAEEILKVITKKDVVLLKGSRGMALEEIV 447 >gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] Length = 459 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/442 (28%), Positives = 211/442 (47%), Gaps = 15/442 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I P + F G DGH+F+ A + GA ++ PV Sbjct: 28 ITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL ++A K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 86 LVEDTLLALQEMAKKYIQEVKPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + Y+++ SH G +FGKS+ A+ Sbjct: 206 AKAKLEITAGLSPSGILIYPYEEALL-----LSHIDGDFRQLTFGKSQEAEIYPLAIHAE 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +E + + +E+ IG H N + T+ + + + KAL E Sbjct: 261 AEGTAFVTNWE-PDLEIFVPIIGEHNVFNAMATMLAAREIGIEGEKIQKALRNM---ERS 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R + +++++YN++P ++K + + G+ R+ VL DM E+GELS+ Sbjct: 317 KSRLEWLTTKNGTRILNDAYNSSPTALKTVLKTFMHMDSQGK-RKYLVLADMLELGELSE 375 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVD 443 H + AEVL + V+L G + A ++ I V + +T + L + + + Sbjct: 376 QLHKESAEVLEEGAVEKVFLYGEAMKAFEEVAKIKIGQRKVQHFDTKESLETALLNEMDG 435 Query: 444 GDVVVVKSSNSCGFYRLINLLL 465 + ++VK S G ++ L+ Sbjct: 436 NEWILVKGSYGMGLKDVVENLI 457 >gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 459 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 198/386 (51%), Gaps = 21/386 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + F A+KG +D HDF AV+ GAG + +V+ + ++ P Sbjct: 30 ISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGAL-----LVSRVLDINFPQV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ KLA R +S A ++A+TGS GKT+ KEM L T G+ NN Sbjct: 85 VVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +F + ELG SH+GEI + + RP A++ + AHL++F + I Sbjct: 145 IGVPLTLFRLTEQHEFAVVELGASHVGEIAYTVEMARPETALVNNLFAAHLADFGSLASI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR--K 262 A AK EIF GL + GT +N + + + + +G KT+ +S ++ ADF + Sbjct: 205 AKAKGEIFTGLSEKGTAIINMESNDWAHWQ---QVIGDKTVQRFSMQQASGADFYATDIQ 261 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 KQ + + + + + G +++A + + +S+ D L + Sbjct: 262 VKQLTTDFCLHTPIGSTEINLPLPG-KHNVANALAASALAISVGATLQDI---RLGLSEL 317 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 K G+ + L +G L+D++YNAN SM A+ VLSQ+ G R+ V+GD+ +G Sbjct: 318 KAVPGRLFPINLAEGKL-LLDDTYNANVGSMTVAVQVLSQMP----GYRVLVVGDIGALG 372 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 E S +H + E ++ I+ V+ G Sbjct: 373 EQSADYHRQIGETVASCGINSVFSVG 398 >gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 453 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 131/432 (30%), Positives = 203/432 (46%), Gaps = 20/432 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 ++ + DSR + P F G DGH F A Q GA ++ N D V + ++ +P Sbjct: 21 IHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADRTVVVP 80 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D L A+ ++A R+ II +TGSVGKTTTKE LS+ T G+ N Sbjct: 81 ----DSAL-AMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFGNTLKTEGNQN 135 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP TL R+ ++ + E+GM H GEI LT VRP +IT I +HL N E Sbjct: 136 NEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLGTRE 195 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 I AK EI GL + LN D+ + ++ ++ FG + AD + + Sbjct: 196 NILKAKMEICAGLPDGAPLVLNADNDLLPTAQVPGR---LRAVW-FGIEQEADVRAENIQ 251 Query: 265 QCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ ++ V + V G H + L + L D KALS + Sbjct: 252 TGAQGTTFTLVDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKALSRY--- 308 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + G R + +G T+I++ YNA+P SMKAAISVL + R+IA+LGDM E+G+ Sbjct: 309 QTTGMRQHI-VERGGVTVIEDCYNASPDSMKAAISVLKALP---NKRKIALLGDMLELGD 364 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442 S+ H E ++ + + G + +A R + + + + +Q + Sbjct: 365 ASEEGHRHTGEWVAEAGVDTLIAYGPRSAVMAEAAQARGVTTVHCQKAQEVLQCLQQFVQ 424 Query: 443 DGDVVVVKSSNS 454 GD ++ K+S++ Sbjct: 425 PGDALLAKASHA 436 >gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate [Bacillus cereus Q1] gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus Q1] Length = 451 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 227/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 24 IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 74 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 134 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLET 193 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 EEIA AK EI +GL G N D+ LL + LGI++ GK N F Sbjct: 194 LGSREEIAKAKFEIVDGLHDDGLFLYNGDEP---LLSQHINTLGIESKSFGGKYTNDLFP 250 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 VQL G ++ H I Y H N+ T+ GI + T Sbjct: 251 TN------------VQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NANP+SMKAAI L +++ + Sbjct: 299 EKIQEALQQINITQ------MRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKLNAY- 351 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 +++ V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ H Sbjct: 352 -KKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYHAGKV 410 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 411 QSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIV 447 >gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 200/395 (50%), Gaps = 22/395 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I P FFA++G +++G+ + A+++GA VV+ +A+ + VD Sbjct: 16 VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQDRCIV----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + IIAITGS GKTTTKE++ L S + G+ NNHIGV Sbjct: 72 DVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL ++ ++ + E+G +H GEI L + P +IT I AHL F GIE + Sbjct: 132 PLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFGGIEGVKKG 191 Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-- 266 K+E++ L +T G F+N D+ F L + G++ + +S + + ++ Sbjct: 192 KSELYRYLAETDGLAFVNNDEPFLVELSS-----GVRKRIFYERSDDPAPNHKPYEVVLL 246 Query: 267 SEQSWMEVQLQGKSMEVVHHG---IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q ++ V ++ +++ G +G H QN+ + + A+ ++P Sbjct: 247 QLQPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGKKIKAAIENYNPN 306 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + N +++ ++YNANP+SM+ + S+ SP + RIA+LGDM E+GE Sbjct: 307 MNRSQWVSWGTN----SILLDAYNANPSSMEVTLRSFSE-SPASQ--RIAILGDMFELGE 359 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S H +A++ N V L G H A+ L Sbjct: 360 SSAVEHERVAQLAQSLNFEQVILVGQHFAAIARQL 394 >gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] Length = 463 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 128/435 (29%), Positives = 214/435 (49%), Gaps = 19/435 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGS--- 80 G SIDSR+I E FFA++G DGHD++ A+ GA VV+ + A++ Sbjct: 23 LAQGYSIDSRTIGAGELFFAVRGERVDGHDYVETALADGAVAAVVSMRWLKPATVEEGKL 82 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L +P D VL ++ KLA R II +TGS GKTTTKE + LS+ Sbjct: 83 LRVPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGKTTTKECIAQVLSAKFHVLKSE 142 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN G+PL L ++ + + + E+GM+H GEIR L + P AV++ +AP HL +F Sbjct: 143 GNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVHLEHF 202 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 GIE IA AK E+ E L G LN DD E + A + +T+ +G + Sbjct: 203 PDGIEGIARAKYELVEALPADGIAILNGDD---ERVAAFGKGMRGRTVL-YGTLPGLTVR 258 Query: 260 LRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + ++ + + V + G+ ++ +G H N L + + D+ AL Sbjct: 259 AVEIEEAGLDGTRFRVGIVGRVQKIHLRLMGRHNVLNALAAVAVGLQSGIDLKDCCLALE 318 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P E RG+ + + +I++ YN+NP +++A + L + RRI + G+M Sbjct: 319 QMRPTEKRGE----VIERHGAKIINDCYNSNPRALEAMVEALRKTKAT---RRIVMAGEM 371 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G + H + ++ ++ V + G ++ A + ++ ET + +++ Sbjct: 372 LELGPEGAALHRECGIAMAGMDVV-VGVRGLAASLVEGAESEGVEANFVETPEAAGEWLR 430 Query: 439 SSLVDGDVVVVKSSN 453 +L +GDVV++K+S Sbjct: 431 ENLREGDVVLMKASR 445 >gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 452 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TAIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ HI Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHI 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 130/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 26 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A + + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI F L +PH+A+IT AH+ F Sbjct: 137 NLNNELGVPLTLLELTPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 G ++I AK EI EGL +GT LN +D F + + ++ G + I +F AD Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253 Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + C S +VQL + +G H N L L + Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + A N +ID++YNANPAS+ AA+ +L+ S GR Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFS----GR 357 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H D+ +V +LY + Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393 >gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 130/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 26 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A + + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI F L +PH+A+IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 G ++I AK EI EGL +GT LN +D F + + ++ G + I +F AD Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253 Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + C S +VQL + +G H N L L + Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + A N +ID++YNANPAS+ AA+ +L+ S GR Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFS----GR 357 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H D+ +V +LY + Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393 >gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] Length = 453 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGQV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G+ L TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKGRVDMTQLRDD-ITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKYAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 485 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 226/476 (47%), Gaps = 37/476 (7%) Query: 21 IVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDM 74 +VP + V G + DSR + P + A+ G +DG DF ++A+ GA LV+ + D Sbjct: 17 VVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALDAGAACLLVMRSPDE 76 Query: 75 VASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 ++ + + V+D A LA A R R ++IAITGS GKTTTK ++ L+ Sbjct: 77 ALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSGKTTTKNLVRDVLAR 136 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 A G+ NN +GVP TL R D F + E+GM G+I L VRP +A++T + Sbjct: 137 AGSVVATQGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESLCRFVRPDMALVTNV 196 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHA--LGIKTIYS 249 +H+ + IA AKAEI G++ TG F+N D F +L A A G++ ++ Sbjct: 197 GESHIELLGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPAYGSADERGVEILFF 256 Query: 250 FGKSKN-ADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI----------GYHMAQNM 296 G K A + + + S +E+ G + +H G H N Sbjct: 257 DGSGKEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTASVHLALAGLHNVHNA 316 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + S + + AL +GRG+ R A ++D++YNANP SMKA+ Sbjct: 317 TAAAAVGSQVGLSASVIVDALEKATSLDGRGRVVRTASG---VVVVDDAYNANPDSMKAS 373 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-----WLSGFHV 411 + + + H GR IAVLGDM E+G+ ++ H + +++ I + G Sbjct: 374 LGSFAAM--HFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDLIICVGSLACGIAR 431 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLLLE 466 A+ +P + ++ L + SLV+ GD ++VK+S+S G ++ L++ Sbjct: 432 AAVAAGMPEDAAICVTDASAALDQVV--SLVNAGDGILVKASHSVGLEAVVKGLVK 485 >gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 454 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/457 (28%), Positives = 227/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGHD++ A+ GA VAS+ S Sbjct: 27 IHGVCIDSKNMKEGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 76 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VD+ L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 77 PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIESILSSTYRVHKT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +AVIT I +HL Sbjct: 137 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 +EIA AK EI +GL + G N D+ K+ ++ KT FG+ D Sbjct: 197 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDL- 251 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 VQL G ++ H I Y H N+ T+ GI + T Sbjct: 252 ----------FPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPT 301 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NA+P+SMKAAI L +++ + Sbjct: 302 EKIQEALQQINITQ------MRFQFLTAKKGFTIINDAWNASPSSMKAAIETLQKLNAY- 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 ++I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ H+ Sbjct: 355 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 413 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 414 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIV 450 >gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 206/462 (44%), Gaps = 26/462 (5%) Query: 8 HDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D++ A+ G I G++ Q + I+ DSRS F +KG +DGH+FI +KG Sbjct: 6 QDIISAVGGKCIQEGLIKQP-IEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKG- 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ M + + V+D AL L R + ++ ITGSVGKT+TKEM Sbjct: 64 --VIATLTMEDKVIDPRLWTIKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + G++NN IG+PLTL +M + + E+GM+H EI L+ P Sbjct: 122 VAAVLSGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEIHRLSLAAAPE 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT + +H+ N E I AK EI +GL G + LN D+ +LL K Sbjct: 182 VAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDN---DLLSTVGELPFNK 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y S D+ E + V + +G HM N L + + Sbjct: 239 VTYGLNTSN--DYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAAIAVAQY 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L K L + P + R NQ T+ID++YNA+P SM+AA+ VL Sbjct: 297 LGLSKAEIQKGLESYAPAKMR-MHLETYDNQ--ITVIDDTYNASPDSMEAALKVLRDYDT 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419 +GR+IAVLGDM EMGE + H + + I V+ G F ++ P Sbjct: 354 --KGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVGTLAEYIFKGAKEQEGAP 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 Y T + +Q L D V+ K+S F ++ Sbjct: 412 ----TFYYPTKEAFIEVMQRELQAEDTVLFKASRGMHFEEML 449 >gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 214/458 (46%), Gaps = 49/458 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 +N I DSR I + F +KG DGHDFI A + GA VA+ IP Sbjct: 26 LNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFENGA---------VATFSEKEIPGK 75 Query: 85 -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D L A LA + + +IA+TGS GKT+TK+M+ L++ KTY G+Y Sbjct: 76 PYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNY 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP D + + E+G H+G+I L+ + +PHIAV+T I AHL F Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAKPHIAVVTLIGEAHLEFFGSR 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQL 260 E+IA K +I +G++ G I + D + ++ L FG ++ D Q Sbjct: 196 EKIAEGKMQIIDGMDSHG-ILIAPGDPIIDPYLPENQML-----IRFGDNQEIYVKDIQE 249 Query: 261 RKWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 RK + ++ + L GK + A N ++ + +L + D I+A Sbjct: 250 RKNSLTFTTNVLDRAITLPLSGK-----------YNASNAMIAAYVGKLLAVEDDDIIEA 298 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L + R + ++ A N ++ + YNANP +M+ + S ++P +G++IAVL Sbjct: 299 LENIQLTKNRTE-WKKAANGA--DILSDVYNANPTAMRLILESFSSLTPENQGKKIAVLA 355 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYS 427 DM E+G S H + LS I H+ G + +L + + Sbjct: 356 DMKELGPKSVELHQQIITALSPDKIDHLVFYGNDIESLAQLASQMYPIGKVYFFKKTEDQ 415 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + D + ++ L D +++K SNS +L+ L+ Sbjct: 416 DQFDAMANHVKEILEANDYLLLKGSNSMHLDQLVEQLV 453 >gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] Length = 457 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 224/471 (47%), Gaps = 27/471 (5%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R + D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I+ + AK EIF+GL T +N + + + + L Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAADDTAIVNLESNGGDFW---NDVLA 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K++ +F +S + K +EQ + ++Q S+ V IG H N L Sbjct: 237 DKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + A +D L+ +GR + + + N LID+SYNA+ +MKAA +LS Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV----VVKSSNSCGFYRLINLLLEEF 468 H++ T + I+ L + V +VK +NS G ++ L E F Sbjct: 410 ---HFT-THQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456 >gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] Length = 458 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 11/404 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA + R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDVANPPENL--PVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + L Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLL-TNRVPEMNLMA 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ +FG ++ D+ + + ++ + +++ +G H N L ++ I Sbjct: 242 ETV-TFGDARANDYYPTTVTLQATGTHFKMN-KDENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGLVTLQMT---GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 G ++I VLGDM E+G+ FH ++ +++ I+ V+ G Sbjct: 357 --GFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYG 398 >gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Erwinia amylovora ATCC 49946] gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia amylovora ATCC 49946] gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 452 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 213/443 (48%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R A F A+KG +D HDF+ A+ G ++V+ + + +P V Sbjct: 27 VTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVSKRL-----PVELPQVVVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R +S A I+A+TGS GKT+ KEM L +T G++NN IGV Sbjct: 82 DTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTAAILRECGETLYTTGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + ELG +H GEI + + LVRP A++ +A AHL F + +A A Sbjct: 142 PLTLLRLKPEHRYAVIELGANHQGEIAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268 K EIF GL GT +N D + + + HA KT++ F + ++DF ++ Sbjct: 202 KGEIFSGLPLNGTAIINSDSNDWPHWQQALHA---KTVWRFSPEQADSDFYAANVTISAQ 258 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + ++V+ G H N L + + A + + LS GR Sbjct: 259 GTHFTLHSPLGDVDVILPLPGRHNIANALAASALALSVGAPLSAVRQGLSTLKAVPGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + AL+ L+D+SYNAN SM AA VL+ + G R+ ++GDM EMG + Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGMP----GYRVMIVGDMAEMGAEAAEC 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444 H + + I V +G + DA + H+++ + L L Q + Sbjct: 372 HRQVGNAIRHAGIDKVLSTGSLSHGISDA--SGVGEHFADKAALGVRALELLAQHQHI-- 427 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 ++VK S S +++ +L E+ Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449 >gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] Length = 480 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 189/386 (48%), Gaps = 34/386 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I + F A+KG ++DG F+ A GA VVN D +P+ V+ Sbjct: 25 VSTDTRTIQQGDLFIALKGENFDGARFVAQAAMAGAVAAVVNRDAGLRTQDSGVPLLFVE 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-------------- 135 D AL +LA R + ++AITGS GKTT KEML+ L K Sbjct: 85 DTRLALGELAAYWRAQFDIPLVAITGSNGKTTVKEMLSAILRQKIKDDSYDRSLAPRERV 144 Query: 136 ---------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 A G++NN IG+PLTL R+ + + + E+GM+H EI +LT + P + Sbjct: 145 GECDDADRFVLATKGNFNNDIGMPLTLLRLRANHRYAVIEMGMNHPNEIDYLTRIACPDV 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++ AHL +E +A AK EIF GL+ GT +N DD+ L ++ + G Sbjct: 205 ALVNNATGAHLQGLGTVEGVARAKGEIFAGLKDDGTAVINADDAHAALWRSLA---GKHR 261 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + F A+ Q KW + V+ M +V G H A+N L L Sbjct: 262 VLDFSLEHPANIQ-GKWVVQGYGGELLVRTPAGEMRIVLQVPGEHNARNALAAATAALAL 320 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 T + L F GR +R + + TLID++YNANPASM AA+ VL+Q Sbjct: 321 QIPSATIVTGLQGFGGVAGRLQRKQA---KNGATLIDDTYNANPASMHAALEVLAQ---- 373 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDL 392 +G+RI VLGDM E+GE + FH ++ Sbjct: 374 AKGKRIFVLGDMGELGEDAAQFHREI 399 >gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] Length = 444 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 217/451 (48%), Gaps = 36/451 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + + F A+ H DGH +I A+ GA V+V+ + IP Sbjct: 22 ITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHAITP---DIPAI 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +L R +IAITGS GKTTTK+M LS+ KT+ +YNN Sbjct: 78 IVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDMTAAILSTKFKTFKTPENYNNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL MP D + + ELGM G++ L+HLV P IA+IT I AH+ F + I Sbjct: 138 IGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPDIAIITMIGEAHIEFFQTRDNI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL+ G + + +D+ KS FG+ +A L Sbjct: 198 ARAKLEITQGLKSDGILLVPFDEPLLTQAAVKSDR------QYFGEKVSAIQALATVTTF 251 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + EQ + + G+ + N L + +L+ D+ A AL F + Sbjct: 252 TFEQQKFAIPVMGR-----------YNVMNALAAISAGKLLSIDLKHAALALKNFDLTKN 300 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + R +QG LI + YNANP ++ A +S L + R+ VLGDM E+G + Sbjct: 301 RTE--RLVTSQGVV-LISDVYNANPTAVAAVLSTLKSLPAR---RKYVVLGDMLELGTQA 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSG--FH-----VLALKDALPRSIHVHYSETMDGLFLFIQ 438 H +L + ++ V+L G F+ +L K + R +H++ ++ + L + Sbjct: 355 NHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKMGVER-VHLYQTDQLKQLASDLL 413 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + GDV+++K+S+ ++ L E P Sbjct: 414 AISQPGDVILLKASHGIHLEEVVQQLTSEQP 444 >gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/442 (30%), Positives = 216/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I P + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 MAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPLGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] Length = 455 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 174/365 (47%), Gaps = 18/365 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + + DSR+I + F A+ GP +DGH F+ KGA +V M L +P Sbjct: 26 DSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAVAALVQRTMP----ELGLPQLQ 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL +L R + A+TGS GKTT KEML L + A G+ NN + Sbjct: 82 VADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEMLASILRTRGPVLATRGNLNNDL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + + ELG S +GEI + L RP +A+IT AH+ F G E+I Sbjct: 142 GVPLTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQVAIITNAGTAHVGEFGGPEKIV 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266 AK EI EGL G LN DD F++ + ++ + + SF + +ADF R Q Sbjct: 202 EAKGEILEGLPADGIAVLNRDDPAFDIWQRRAAG---RRVLSFALDASDADFLARDI-QP 257 Query: 267 SEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + L+G + E + + +G H N L L + L P + Sbjct: 258 DARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAASAAHALGMPLVGIRAGLESLQPVK 317 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR +ID+SYNANPASM+AAI +L+ S GR + LGDM E+G Sbjct: 318 GRAV---AQFAPSGVRVIDDSYNANPASMRAAIDILAGFS----GRTLLALGDMGELGAW 370 Query: 385 SQSFH 389 ++ H Sbjct: 371 AEEGH 375 >gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] Length = 464 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 141/445 (31%), Positives = 214/445 (48%), Gaps = 38/445 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-PVFGV 88 + DSRS+ + F A+KG ++DGH F A+ +GA V++ S +L++ P V Sbjct: 25 VGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLI------SDRTLNVQPAILV 78 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKTYACIGSYN 144 DD +L +LA R + + A+TGS GKTT KEML A A +G+ N Sbjct: 79 DDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVKEMLASILRAACDQPDAVLATVGNLN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+PLTL ++ + + E+GM+H GEI +L+ + +P +A+I AH+ E Sbjct: 139 NHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVALINNAGNAHIGELGSFE 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK EIFEGL T +N DD F L + G + I +FG AD +++ Sbjct: 199 AIARAKGEIFEGLAADATAVINADDVFAPLWLDLA---GQRKIMTFGLKNKADVT-AQYQ 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S +E+ +++V G H N L + A + L + + Sbjct: 255 LHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTALAMGASLQAVSIGLENYAGVK 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR ++ + LN +ID++YNANP SMK AI VL +S G +I VLGDM E+G+ Sbjct: 315 GRLQQ-KAGLNGAL--VIDDTYNANPMSMKVAIDVLMAMS----GEKILVLGDMGELGDN 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHV------HYSETMDGLFLFI 437 + H ++ S+ SG L L D + HY+ D L + Sbjct: 368 AAEMHAEIG--------SYAKASGLKSLFVLGDMSAETAKTFGAGAKHYTTPQD-LVTDL 418 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462 + + G V+VK S R++N Sbjct: 419 RKQMQQGTNVLVKGSRFMAMERVVN 443 >gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] Length = 470 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 216/462 (46%), Gaps = 33/462 (7%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V G + DSR I P + F A G DGH F+ AV++GA L +V ++ + + Sbjct: 25 PDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAVERGAALAIVERELDDPVSQI 84 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P D + AL+ LA V AR+R + I+ ITGS GKTTTK +L LS +T Sbjct: 85 VVP-----DAVTALSDLARDVVARVREHGRLRIVGITGSNGKTTTKNLLARILSDEGETV 139 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 + S+NN +G PLT+ R+ D F + E G S G I L LV P + V+ + AH Sbjct: 140 SPRASFNNEVGAPLTMLRVTEDTRFLVSEFGASAPGAIAHLAGLVTPDVGVVLMVGMAHA 199 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F GIE AK+E+ + G LN DD ++ + G + + FG+ + A Sbjct: 200 GGFGGIESTFRAKSELVHATREGGLAVLNVDDPRVAAMEPFARERG-QDVRWFGRGERAA 258 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + + + ++ + G+ + +G H N L L + L AI L Sbjct: 259 VRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNALAALATATALGVPAAEAIARL 318 Query: 318 SVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 E R+R L +I+++YNA+P SM AA+ L+QI+ GE R +AVLG Sbjct: 319 ETVEIAE----RWRMQPLGSDRVRIINDAYNASPDSMAAALRTLAQITGPGE-RTVAVLG 373 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---- 432 M E+GE + H + + I + + G +A + + DG Sbjct: 374 AMSELGEYADEEHDRVGLLAVRLRIQRIVVIG------PEARRMYLEAIAQGSWDGEAVF 427 Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + ++ + L DGD V+VKSSNS G L + L E F Sbjct: 428 FADADAAYDYLATELRDGDRVLVKSSNSAGLRFLGDRLGELF 469 >gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] Length = 483 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 222/455 (48%), Gaps = 40/455 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ + ++ +A+ G IG N +S DSR P F AI+G DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDADSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVA 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAI 113 ++GA + +V+ + + S +P V D + AL +LA +R + II + Sbjct: 59 KTAEQGATVAIVDHE----VESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGL 114 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+G Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI- 288 + L + FG + + ++R +++S + V G VH GI Sbjct: 235 PMA----GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIP 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLID 343 G H N L + +T + L+ H +R AL+ +G FTLID Sbjct: 290 GRHNVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLID 345 Query: 344 ESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +S+NANP SMKA ++ L + + +G+ R+A+LG M E+G + H + + Sbjct: 346 DSFNANPDSMKAGLNGLKAWNSN-DGKDPFRVALLGAMLELGADETALHTSIGTYAAELG 404 Query: 401 ISHVWLSGF----HVLALKDALPRSIHVHYSETMD 431 I + G H+ AL AL S ++D Sbjct: 405 IDAIIAVGSAQDQHLDALAQALADGARQSQSASVD 439 >gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK408] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 216/444 (48%), Gaps = 31/444 (6%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR I P F +KG DGHDFI A +GA + ++ + G+ + VDD Sbjct: 30 EFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDD 82 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 VL A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P Sbjct: 83 VLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T+ MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGK 202 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSL 254 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + +++ G Y+ M+ + ++ D A +A S R + + Sbjct: 255 SFDCNFLEQKIDLPVTG-KYNATNAMIAAYAALQEGVSEADIA-QAFSELELTRNRTE-W 311 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + A N ++ + YNANP +M+ + S I + GR++AVL DM E+G ++S H Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHG 369 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440 + L+ ++ ++L G + AL D + I+ VHY + + L ++ Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREK 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L D +++K SNS +L+ L Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452 >gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] Length = 459 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 220/449 (48%), Gaps = 53/449 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + F ++G H DGH ++ A GA + +D + + PV Sbjct: 26 VTSVSFDSRHLEKGALFVPLQGAH-DGHQYVETAFTNGAAATLWASDH--ELTNSDHPVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 83 VVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTKDMIASILSTQLNVTKTYA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GM G++ FL+ LV P IAVIT I AH+ F Sbjct: 140 NNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------- 252 + IA AK EI GL++ G + D+ LL ++ + +T FG+ Sbjct: 200 DRIADAKMEIVNGLKEDGLFVYDGDEP---LLNERAANITQQTT-RFGRQLTDDLYATSV 255 Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 S++ +F++ +W EQ + + +G + N L + + L Sbjct: 256 NAGSRSIEFKVNEW--PDEQFTIPM-------------VGEYNVNNALAAMAVAKRLHIS 300 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + AL+ E R + ++ + ++ + YN+NP + K + L+++ +G Sbjct: 301 PNHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAEMPV--QG 355 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------SIH 423 RRIAVLGDM E+GE + H LAE ++ I V+L G + L+ L +IH Sbjct: 356 RRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQEQGYPAAAIH 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + ++ +D L +++ L D+V++K+S Sbjct: 416 YYQADQLDQLTAALEADLHPADMVLLKAS 444 >gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 445 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/473 (30%), Positives = 233/473 (49%), Gaps = 37/473 (7%) Query: 4 LWTFHDLLQ-AIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L T DLLQ +QG H +G+ V I DSR + P F A++G +DGH+FI A Sbjct: 4 LRTVADLLQTPLQGDPHLLGLP----VQAICTDSRQLQPGSVFVALRGERFDGHNFIPQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA + V++ VA P F V D L A ++A R + +++AITGS GKT Sbjct: 60 LARGA-VAVISQRPVAG------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML ALS ++NN IGV TL +M + F + E+ M GEIR L Sbjct: 113 TTKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRRLAQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A+IT I AH+ IA+AK E+ + L + G LN +D LL + + Sbjct: 173 MAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQELGQ-GVALLNGEDP---LLLSTAA 228 Query: 241 ALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +L ++G + LR +W ++ V ++G ++ V G H A N + Sbjct: 229 SLWSGQTLTYGLDQG---DLRGEWDPQAQ----TVTVEGLTLPVPLP--GRHHALNWMGV 279 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + L D + + +++ P EGR + + A G + DE+YNA+P +M AA+ + Sbjct: 280 LAALRSLGLDWERLREPIALPTPLEGRNRHLKLA---GDVEIWDETYNASPEAMIAALHL 336 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417 L+Q G+ RR A+LG M E+GE + + ++ + + + L + L D Sbjct: 337 LAQTP--GK-RRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLDPEGEMQPLLDQ 393 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 P + E + L + + GD ++ K++ + R+++ L+E+ A Sbjct: 394 KP-AAQTERCEEVSELLEILLHHVQAGDRLLFKAARAVELERVLHRFLQEWQA 445 >gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR IAP + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 26 DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ R + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+ +IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260 G E I AK EI EG+E +GT LN +D F + + ++ I T + + +L Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGPRNILTFALADAAADFHAGEL 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + M L S +V + +G H N L L ++ + L+ Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + +ID++YNANP S+ AA+ +L+ + GR + VLGD+ E Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367 Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401 +GE ++ H D+ +V +LY + Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393 >gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 451 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 187/381 (49%), Gaps = 34/381 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SIDSR I Q F KG H DGH ++ A++ GAG ++ P+ Sbjct: 26 IKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLD-ENIDGPII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL LA A +IA+TGS GKTTTK+M+ L K G+YNN Sbjct: 85 WVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDMIESVLKPQFKVKKTQGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ +D + I E+GMS EI L+ L +P IA+IT I +H+ + E I Sbjct: 145 IGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK+EI GL+ G + D+ LL+ ++ + + SFG KN+D L + Sbjct: 205 AKAKSEITLGLKPGGLFIYDGDEP---LLEPYANEIQNADLVSFG--KNSDNTLVSTIET 259 Query: 267 SEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALS-- 318 ++ G + + H +G H +N + + + L T L Sbjct: 260 -------IKDHGIAFTINHDEHYELPILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNV 312 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V G R + +I+++YNA+P SMKAAI LS + EGR+I VLGD+ Sbjct: 313 VL-----TGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTLSGM----EGRKIIVLGDV 363 Query: 379 CEMGELSQSFHIDLAEVLSLY 399 E+G SQ H E + LY Sbjct: 364 LELGPDSQIMH----EAVGLY 380 >gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 453 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 141/428 (32%), Positives = 205/428 (47%), Gaps = 23/428 (5%) Query: 7 FHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L + +QGHSIG VP + I IDSR++ P F A+KG +DGH F A GA Sbjct: 6 LKELAEVLQGHSIGDNVP---ITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQSHGA 62 Query: 66 -GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 GL + + + +P V D AL +LA R + ++A+TGS GKT+ KE Sbjct: 63 VGL------LSECLLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L G++NN IGVPLTL R+ + DF + ELG S G+I L RP Sbjct: 117 MTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALSRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +IT +A AHLS F ++ +A AK EI L TGT ++ + + K KS G Sbjct: 177 ENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHA--TSHDWPKWKSVFRG- 233 Query: 245 KTIYSFG--KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K ++ FG K K DF + + + S ++ G H N L + Sbjct: 234 KRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALAASAL 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ KALS P GR + L G L+D++YNAN SM AA ++S Sbjct: 294 AISVGADLSAISKALSELKPVPGRA--FPMILGPGKL-LLDDTYNANVGSMIAATEMMSN 350 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + G R+ V+GDM E+GE S++ H + ++ I V+ G+ + D++ Sbjct: 351 MP----GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLGYLSKFMTDSIEHGE 406 Query: 423 HVHYSETM 430 H E + Sbjct: 407 HFTQREKL 414 >gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] Length = 457 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 224/471 (47%), Gaps = 27/471 (5%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R + D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I + AK EIF+GL T +N + + + + L Sbjct: 180 PQVALVNNVAAAHLEGFGSINGVKQAKGEIFQGLAAGDTAIVNLESNGGDFW---NDVLA 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K++ +F +S + K + +EQ + ++Q S+ V IG H N L Sbjct: 237 DKSVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + A +D L+ +GR + + + N LID+SYNA+ +MKAA +LS Sbjct: 297 LSIQFGASLDEVKNGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKLLS 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 354 SF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCNGT 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV----VVKSSNSCGFYRLINLLLEEF 468 H++ T + I+ L + V +VK +NS G ++ L E F Sbjct: 410 ---HFT-THQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456 >gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] Length = 455 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 17/434 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + ++ DSR I F ++G DGHDF+ A+ GA + +I Sbjct: 21 QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L A+ LA + T++ ITGS GKTTTK+M+ LS + ++ Sbjct: 78 AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI + L + G N D+ LL+ ++ L + +FG + Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAKKLD-QVKATFGFRDEDTVHATGF 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + + + + IG H N + + + + +LS F P Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + + + + YN+NP +++A ++ Q+ +G RIAVLGDM E+G+ Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGK 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S + H L++ L I+ V+L G + L DAL P +H + + MD + ++ Sbjct: 369 SSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLK 428 Query: 439 SSLVDGDVVVVKSS 452 + + D+VV+K S Sbjct: 429 NDIKPDDIVVLKGS 442 >gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 460 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 214/447 (47%), Gaps = 27/447 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR ++P F I G DGHDFI AV GA + D + +P Sbjct: 26 VTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGAVATLWAEDHQERRPA-DLPSI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + L AL KLA + ++AITGS GKTTTK+M L + ++NN Sbjct: 84 LVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLEAEYNVVKTKANFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ M + + + E+GM G++ FL+ LV+P IAVIT I AH+ F E I Sbjct: 144 LGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRERI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL++ G N D+ LL+ ++ L ++ Y FG + D + Sbjct: 204 ADAKMEITDGLKEDGCFVFNGDEP---LLEQRAKDLNVEQ-YRFGLKADNDVSASDIQGT 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + L ++ V +G + N L + + D+ +AL F + R Sbjct: 260 DTSTMFKTNLDEETT-VTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKNR 318 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + YN+NP + +A + + ++ EGRR+ VLGDM E+GE + Sbjct: 319 TEWLTGKKGERILSDV---YNSNPTAARAVLDSFANVNT--EGRRLVVLGDMLELGENAD 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH----VHYSET------MDGLFL 435 H LAE L+ + V+L G H+ AL+ L I+ VHY ET D L Sbjct: 374 QMHASLAEKLNAKRFAQVYLIGPHMKALEKRLIDEDIYSKDAVHYYETGELKRLTDDLST 433 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLIN 462 IQ++ D +++K+S+ +++ Sbjct: 434 EIQAN----DSILLKASHGIHLENVVD 456 >gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 452 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TA+KA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAVKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ HI Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHI 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 453 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 220/448 (49%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF+ AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320 S+ V G EV V GI M Q+ + + L+ ++ ++ + + Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S + H + E + + V G + D + + M + I+ Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 378 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 188/375 (50%), Gaps = 38/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL------VVVNTDMVASIGS 80 +NG++IDSR+I F KG + DGH F+ A++ GAG +N D+ Sbjct: 26 INGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDIEG---- 81 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 P+ V+D L AL LA A +IA+TGS GKTTTK+M+ L++ K Sbjct: 82 ---PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQ 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YNN IG+PLT+ + D + I E+GMS EI L+ + P IAVIT I +H+ + Sbjct: 139 GNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA AK+EI GL++ GT + D+ LLK+ L + S G + Sbjct: 199 GSREGIAKAKSEITIGLKENGTFIYDGDEP---LLKSHLEQLNKARLISVGLGNSNTL-- 253 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAI 314 C +++ +G + + +G H +N + + I L +T Sbjct: 254 ----VCHVD---DIETEGIAFTINDKESFTLPILGTHNMKNATIAIAIGHELGLSYETIK 306 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 ++ R +R++ N T+I+++YNA+P SMKAAI LS + EGR+I + Sbjct: 307 DNINHVKLTGMRMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILI 359 Query: 375 LGDMCEMGELSQSFH 389 L D+ E+GE SQS H Sbjct: 360 LADVLELGENSQSMH 374 >gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20] gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd KW20] Length = 457 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 208/429 (48%), Gaps = 25/429 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P Sbjct: 25 VEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSA 252 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + S+ S + +E+ +G H +N L + + A + T +KA + Sbjct: 253 KNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNALAATALAMNVGATL-TDVKA-GLE 310 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + +G+ + + L+D++YNAN S+ AAI VL + RI +GDM E Sbjct: 311 QRSQVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKGY----DAFRILCVGDMKE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +GE S + H ++ + ++L N+ V G + +A+ +E +D L I++ Sbjct: 366 LGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVPLIENQ 425 Query: 441 LVDGDVVVV 449 L VVV Sbjct: 426 LQQNKKVVV 434 >gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 456 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 30/386 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR IAP + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 26 DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ R + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + +L +PH+ +IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVNLTKPHVVIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260 G E I AK EI EG+E +GT LN +D F + + ++ I T + + +L Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGEL 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + M L S +V + +G H N L L ++ + L+ Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + +ID++YNANP S+ AA+ +L+ + GR + VLGD+ E Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367 Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401 +GE ++ H D+ +V +LY + Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393 >gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 481 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 212/452 (46%), Gaps = 47/452 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-------GSLSIPV 85 DSR + F +KG +DGHD++ A + GAG+++VN D A + +++ V Sbjct: 37 DSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAIDDARAMNTSV 96 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V L A+ +LA I ITGSVGKTT K+M+ L S TY G++N+ Sbjct: 97 ISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLPSAMNTYKTKGNFNS 156 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLT MP D +FELGM GEI L+ ++ P +A+IT I +H+ E Sbjct: 157 LIGLPLTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAIITKIGVSHVERLGSREN 216 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I AK+EI ++ GT+ L D+ E K + G + A + Sbjct: 217 IFRAKSEIVNHIKPGGTLILGVDED--EQYLKKENFTGNFNVIEVTAKHYAGVDSNTYCV 274 Query: 266 CSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFH 321 + + ME + G E + I H N L L I L D+D + Sbjct: 275 ENVRDDMEGIRFEFSGGGYEKIPVTINTHGIHNALNAGLAIACGLQFDID-------LES 327 Query: 322 PKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 KEG KR +G T ID+SYNA+P SM +A+ VLSQIS +GR +AVL Sbjct: 328 IKEGLKNVNFTAKRLEIK-EKGGITFIDDSYNASPESMSSALRVLSQIS---KGRMVAVL 383 Query: 376 GDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 GDM E+G+ S+ FH + + E++++ ++ GF A + + + + Sbjct: 384 GDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGEKGRGYIEGFSEAAEIEGKKNDVQIVW 443 Query: 427 SE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454 E D F I +GD V++K+SN+ Sbjct: 444 IEDSKKCRDACFKHIS----EGDWVLLKASNA 471 >gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] Length = 454 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 216/457 (47%), Gaps = 38/457 (8%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++++A++G S G V IS D+R+I F A+KG ++DGHDF A++ GA V Sbjct: 8 EIIEAVRG-SYGYPANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAMELGAIAV 66 Query: 69 VVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATI--IAITGSVGKTT 121 V PV G VD AL L A+ RSK I + ITGSVGKTT Sbjct: 67 VTER-----------PVDGARCLIVDSTAQAL--LDSASYYRSKFDIPLVGITGSVGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ LS KT ++NN +G+P TL + + E+GM+H GEI ++ Sbjct: 114 TKEMIYSVLSRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMSTS 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P I VIT I +H+ N E I AK EI +G + L DD AK+ Sbjct: 174 CKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDKLL----AKAEI 229 Query: 242 LGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + ++ + S K+ D S+ + + + + + +G H +N L Sbjct: 230 YGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALAAF 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + I L+ F P+ G R G T + + YNA P SMKA++SVL Sbjct: 290 CAGAAAGMENEDIIAGLADFRPE---GMRQNIITENG-MTFVLDCYNAAPDSMKASLSVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALK 415 SQIS GRR AVLGDM E+G+ + +H + E + + G + A Sbjct: 346 SQISVR--GRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKNSTYYIEGACD 403 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 R H+ E+ + L +++++L +GD V+ K S Sbjct: 404 KGFDRENTKHF-ESHEELVEYLKANLKEGDAVLFKGS 439 >gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 212/446 (47%), Gaps = 34/446 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+I P + F A+ GP +DGH ++ KGA +V ++ + +P V Sbjct: 28 VSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVAREVEGA----PLPQLVVA 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL +L R K + AITGS GKT+ KEML L S A G+ NN Sbjct: 84 DTRLALGRLGALNREAFKGPVAAITGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNND 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G PLTL + + + ELG S +G+I + LVRP +++IT AH+ F G E+I Sbjct: 144 LGAPLTLLELSAEHRSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--W 263 AK EI +GL TGT LN DD + + + + K I SFG + ADF + Sbjct: 204 VQAKGEILDGLSATGTAVLNRDDKAYPIWAER---VAGKRIVSFGLDNPPADFSAGSIAY 260 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q +++ G ++ V + +G H N L L + + L P Sbjct: 261 DQRGCPNFVLTGPLG-NLRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPV 319 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR A LID+SYNANPAS+ AAI VL+ + GR I VLGDM E+GE Sbjct: 320 KGRAVAQMLANG---VRLIDDSYNANPASICAAIDVLASFA----GRTILVLGDMGELGE 372 Query: 384 LSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 ++ H D+ +V +LY + + H +A R H+ + L ++ Sbjct: 373 WAEQGHRDVGAYAAGKVDTLYAVGPLM---AHAVAAFGQGAR----HFPDQAS-LIESLR 424 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + G +++K S S ++++ L Sbjct: 425 AEQGSGTTILIKGSRSAAMDKVVDAL 450 >gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 453 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 209/449 (46%), Gaps = 26/449 (5%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G + ++ D+R F AIKG +D HDF+ AV G ++V+ + + + + Sbjct: 22 GAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVTAGCSGLLVSQRLPVEVSQVVVA 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D AL +LA R RS+A I+A+TGS GKT+ KEM L +T G+ N Sbjct: 82 -----DTRIALGQLAAWVRQRSEARIVALTGSSGKTSVKEMTAAILRQCGETLYTAGNLN 136 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLTL R+ + + ELG +H EI + T LVRP A++ +A AHL F + Sbjct: 137 NDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTTDLVRPETALVNNLAAAHLEGFGSLA 196 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRK 262 +A AK EIF GL GT +N D + + ++ H KT++ F + A DF Sbjct: 197 GVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQSALHG---KTVWRFSPDRQADSDFYASG 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 ++ + + ++V G H N L + + A + + LS Sbjct: 254 VTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAASALALSVGAPLSAVCQGLSTLKA 313 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GR + AL+ L+D+SYNAN SM AA VL+++ G R+ ++GDM EMG Sbjct: 314 VPGR--LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMIVGDMAEMG 366 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DGLFLFIQ 438 + H + + I V +G + DA + H+++ L L Q Sbjct: 367 AEAAECHRQVGNAIRHAAIDKVLSTGSLSHGISDA--SGVGEHFADKTALGARALELLAQ 424 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++VK S S +++ +L E+ Sbjct: 425 HQQI---TLLVKGSRSASMEKVVQILQEK 450 >gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] Length = 455 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 20/443 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S D+R + F A+KG ++D HDF+ +KG VV + + + +P Sbjct: 24 DGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVA--ERIPE--NYPLPALI 79 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144 V D AL +A R ++ +TGS GKTT KEM+ + A G++N Sbjct: 80 VADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFKTAFGEDGRLATSGNFN 139 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLT+ RM + + ELGM+H+GE+ +L+ + +P + ++ H + Sbjct: 140 NDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIAQPTVGLVNNAQREHQEFMQTVL 199 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A + L + GT D+ + +L + G + I +FG K+A ++K Sbjct: 200 AVAEENGTVIRSLPENGTAVFPADEPYSDLW---TRYAGARQIRTFGLGKDAKVS-GQYK 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ +GKS V G H +N L D T +K L F P Sbjct: 256 NEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSAGIDWQTIVKGLEAFSPVH 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR ++ + A N LID++YNANP S++AAI VL+++S G+ I VLGDM E+G Sbjct: 316 GRLEK-KNAFNGAL--LIDDTYNANPDSVRAAIDVLAELS----GKGIFVLGDMGEVGND 368 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + FH+++ E ISH + G A S H+ + M+ + ++ L Sbjct: 369 GERFHVEVGEYAKERQISHFFTFGEMARFASKAYGNSGR-HF-DNMNEMNAVLEQLLEPD 426 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 V+VK S R++N L+ + Sbjct: 427 MTVLVKGSRFMKMERVVNQLMNK 449 >gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] Length = 454 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 207/443 (46%), Gaps = 27/443 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--GLVVVNTDMVASIGSLSIP 84 VN ++ D+R I P F A++G +D HDF+ A GA LV D + Sbjct: 22 VNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFDN------- 74 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D L +LA + +A+TG+ GKTT KEM L + T A G++N Sbjct: 75 VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLG--EGTLATNGNFN 132 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N +GVPLTL R+ + + + ELG + GEI + + L RP + ++T + AHL F ++ Sbjct: 133 NDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSLTRPQVVLVTNVTGAHLEGFGSMQ 192 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKW 263 IA AKAEIF G + G +N DDSF + K+ A G+ + S +S A L Sbjct: 193 GIADAKAEIFTGCTQGGQAIVNNDDSFADFFAEKARAAGLTVVRVSMDESTRAGADLYAE 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E LQ V+ G H N LM V L A + + L+ P Sbjct: 253 NIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMACAAVRALGASLPQVLPRLAALKPV 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382 GR + A G T++D++YNANP S++AAI L +Q +P ++ VLG+M E+G Sbjct: 313 PGR-MHIQSA---GTGTVVDDTYNANPGSVRAAIDWLAAQPAP-----QMLVLGEMGELG 363 Query: 383 ELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 + S L E I+ V ++G A +I Y + + + L Sbjct: 364 PQADSLVEALGEYAQQAGIAGLVVMTGAAAAARGYGEAANIAKDYQQAAN----WSAPVL 419 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 G V+VK S S G ++ LL Sbjct: 420 EQGGTVLVKGSRSAGMEAVVRLL 442 >gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] Length = 452 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 131/405 (32%), Positives = 203/405 (50%), Gaps = 50/405 (12%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ I + P F G+S D+R+I F + G +DGHD++ A+ KGA Sbjct: 7 LLKGIITKNNPSAPLSFT-GVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQ--- 62 Query: 70 VNTDMVASIGSLSIPV----------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AS+ + S+PV V+D L AL +A A +++ T++A+TGS GK Sbjct: 63 ------ASLWATSVPVPESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT K++L L+ + Y G+YNNHIG+PLT+ MP + I E+GMS LGEI L+ Sbjct: 117 TTVKDLLYATLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLS 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P IAV+T I +HL E IA AK EI GL+ TG +FL+ D+ S Sbjct: 177 KLATPDIAVVTNIGESHLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLL------S 230 Query: 240 HAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHM 292 H + G++T+ ++K L E + G S + H IG H Sbjct: 231 HYVKEGVQTVGFSSENKIVIHDL------------EAREDGYSFTIDEHSYDIKLIGEHN 278 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N + + L + ++L + R ++ Q L++++YNA+P S Sbjct: 279 VKNAAYAVSVALHLGLSPEQVARSLERVAISKMRLEKIE---GQKGALLLNDAYNASPTS 335 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 MKAAI L + P+ E +++AVLGD+ E+G ++ H +A+ ++ Sbjct: 336 MKAAIKTL-KAYPNYE-KKVAVLGDIYELGIDEEALHRSVADEIT 378 >gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 17/434 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + ++ DSR I F ++G DGHDF+ A+ GA + +I Sbjct: 21 QTVITSVAFDSRKITNGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENI 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L A+ LA + T++ ITGS GKTTTK+M+ LS + ++ Sbjct: 78 AVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F Sbjct: 138 NNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGTR 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI + L + G N D+ LL+ ++ L + +FG + Sbjct: 198 DKIADAKMEITDFLREDGEFIFNGDEP---LLQERAKKLD-QVKATFGFRDEDTVHATGF 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + + + + IG H N + + + + +LS F P Sbjct: 254 KSYMHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPT 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + + + + YN+NP +++A ++ Q+ +G RIAVLGDM E+G+ Sbjct: 312 ANRMEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGK 368 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S + H L++ L I+ V+L G + L DAL P +H + + MD + ++ Sbjct: 369 NSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLK 428 Query: 439 SSLVDGDVVVVKSS 452 + + D+VV+K S Sbjct: 429 NDIKPDDIVVLKGS 442 >gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] Length = 457 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 208/429 (48%), Gaps = 25/429 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSA 252 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + S+ S + +E+ +G H +N L + + A + T +KA + Sbjct: 253 KNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNALAATALAMNVGATL-TDVKA-GLE 310 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + +G+ + + L+D++YNAN S+ AAI VL + RI +GDM E Sbjct: 311 QRSQVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKGY----DAFRILCVGDMKE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +GE S + H ++ + ++L N+ V G + +A+ +E +D L I++ Sbjct: 366 LGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVPLIENQ 425 Query: 441 LVDGDVVVV 449 L VVV Sbjct: 426 LQQNKKVVV 434 >gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 145/478 (30%), Positives = 217/478 (45%), Gaps = 29/478 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ +++ D++ G + G G+S DSR+ E F ++G +DGHDFI A Sbjct: 1 MSAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRA 60 Query: 61 VQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +++G +V + + V + L AL LA R R +IAITGS Sbjct: 61 IKRGVRALVAAEAWWQRQNHQFPKDLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSC 120 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ + L+S + + NN IG+P TL + + + E+GM+H GEIR Sbjct: 121 GKTTTKEMIALVLASRFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRR 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP IAV+T + AHL +E +A AKAE+ +GL G I N DD + L+A Sbjct: 181 LAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADD---QRLRA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHGIGYHMAQ 294 H +T+ SFG A Q QC W E++ QGK + G H Sbjct: 238 ALHHFKGQTL-SFGFDPGAQIQAGPPCQCG--VWGQRAEIRHQGKIWPLELQLPGRHQLY 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + L + +AL F G R + + + ++ YNANP SM Sbjct: 295 NALAAAAVGLALGLPAEQISQALGRF---AGLKHRSQMQCHTSGIHIFNDCYNANPGSMA 351 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VW---LSGF 409 A+ L+ + +GR +A LGDM E+G + H L + + + VW Sbjct: 352 MALQTLASLK--NQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSV 409 Query: 410 HVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 AL +P S + ++E D I+ GD ++VK S +L+ L Sbjct: 410 RQGALAAGMPHSRIYLVASHAEGAD----IIRGFCRPGDTLLVKGSRGATMEKLLACL 463 >gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 46P47B1] Length = 494 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 207/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QAIQG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQAIQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPIMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV G H+ A+ +SI HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTD 453 >gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes sp. HGB5] Length = 414 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 133/437 (30%), Positives = 198/437 (45%), Gaps = 38/437 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R I P FFA+ G +DG+ F A+ KGA VVV+ D A G ++ V Sbjct: 14 ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVD-DPAAVSGDRTVLV---G 69 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R I+AI+GS GKTTTKE+++ L+ + YA G+ NNHIGV Sbjct: 70 DTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNNHIGV 129 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL M D +FG+ E+G S GEI L + P+ ++T I AHL F G E I Sbjct: 130 PLTLLAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNIGRAHLEGFGGPEGIRRG 189 Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+ + L G F+ +D + A+ L + Sbjct: 190 KGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAE----------------------- 226 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V L + HH G + N+ + + D + A+ + P R + Sbjct: 227 --YYSVTLADG---IAHHLEGDYNRFNIAAAVAVGRYFDIDGERIRHAVGSYMPDNNRSQ 281 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R N TLI + YNANP+SM+A++ G RR+ +LGDM E+G S+ Sbjct: 282 RTETERN----TLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILGDMLELGAWSEQE 337 Query: 389 HIDLAEVLSLYNISHVWL-SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H D+ + + + + L G A P+ + + + L ++ V+ V Sbjct: 338 HRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSREELIAELRRRPVENAFV 397 Query: 448 VVKSSNSCGFYRLINLL 464 +VK S G + + L Sbjct: 398 LVKGSRGIGLGKALEEL 414 >gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella kingae ATCC 23330] Length = 454 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 186/362 (51%), Gaps = 20/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR + F A+ G ++D HDF+ + KGA +V D V G L Sbjct: 24 INRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGCLK---- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L AL KLA A R + ITGS GKTT KEMLT L A G++ Sbjct: 80 -VDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLTTVLREKFGADAVLATAGNF 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL + + + E+GM+H GE+ LT + +P++A++ AH+ F+G Sbjct: 139 NNHIGLPLTLLNLRESHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNG 198 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++IA AK+EI++G+++ G L DD+ + +A LG++T +FG ++ D Sbjct: 199 VDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKDLGLQT-QTFGFAQ-GDIHAEN 256 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 K S ++ + + + G H N + + L+ F Sbjct: 257 VKLQPLVSEFDLVQGSERVHITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLANFAN 316 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEM 381 +GR + N T++D++YNANP SMKAA+ VL+++ +PH + V+GDM E+ Sbjct: 317 IKGRLQVKHGIKNS---TILDDTYNANPDSMKAALDVLAKMPAPH-----VFVMGDMGEL 368 Query: 382 GE 383 GE Sbjct: 369 GE 370 >gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 452 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TAIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] Length = 449 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 17/402 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVF 86 G+S D+R I P F A+KG ++DG+ F A+ GA +V+ VA S + Sbjct: 20 GVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTDRCL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL LA R +I +TGS GKTTTKE++ LS YA G+ NNH Sbjct: 80 LVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNLNNH 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + I E+G +H EI FL + P +IT I AHL F GIE + Sbjct: 140 IGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGLITNIGKAHLEGFGGIEGV 199 Query: 207 ASAKAEIFEGLEKTG-TIFLN-YDDSFFELLKAKSHALGIKTIYS---FGKSKNADFQLR 261 K E+++ L + T+F+N D + + + + ++ +T ++ F + N D Sbjct: 200 RIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTFAEAIFYPAANPD---E 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + +S + V E+ H G + NML L I + A +A++ ++ Sbjct: 257 ETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGVSPEEANRAIADYN 316 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R ++ + +G T++ ++YNANP+SM AAI Q + R+ +LGDM E+ Sbjct: 317 PTNNRSQQ----VIKGTNTVLLDAYNANPSSMAAAI---QQFAATPAKRKAVILGDMYEL 369 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G+ S++ H L ++++ N V L+G + + LP++ + Sbjct: 370 GDESEAEHAALGKLIAESNFDLVILAGKDMRFALEYLPKAYY 411 >gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] Length = 463 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 133/437 (30%), Positives = 207/437 (47%), Gaps = 16/437 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R++ + F A++G +D HDF+ A + +VV A + +P V Sbjct: 37 VSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVVEKFNPA----IQLPQLVVA 92 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL ++A R ++AITGS GKTT K ++ L +T A G+ NNHIGV Sbjct: 93 DSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGECGETLATRGNLNNHIGV 152 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + F + E+G S EI + L +P +A+I + PAH+ F I +A+A Sbjct: 153 PLTLLELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSIAGVANA 212 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+EI+ GL G +N DD+F + G KT+ + +A+ + + SE Sbjct: 213 KSEIYGGLVTGGIAVVNIDDAFAP--QWIQQLAGKKTLTVSLANPDANCRAEAIEYASEH 270 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++ + + + ++ + G H +N LM L A ++ + L+ F P GR R Sbjct: 271 LAFDLLIHRQRLRIILNAQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPVAGRMSR 330 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R N +ID+SYNANP S++AAI VL+Q I VLGD+ E+GE + H Sbjct: 331 QRGIHNA---LIIDDSYNANPGSVRAAIDVLAQAEDS-----ILVLGDLAELGETATEQH 382 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L + +I+ ++ G H++E L I L G V+V Sbjct: 383 AALGDYAKQKHINRLFTLGVLTANTSSHFGEGAQ-HFTERNQLLAALI-PLLTSGTTVLV 440 Query: 450 KSSNSCGFYRLINLLLE 466 K S S ++ L E Sbjct: 441 KGSRSSKMDLVVRELCE 457 >gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 452 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TAIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 130/424 (30%), Positives = 206/424 (48%), Gaps = 55/424 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + P+ TF +LL + +G +G+S DSR I + F A+ GP +DGH+++ Sbjct: 2 LKPM-TFAELLVPLDARRVG--GDCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------LGALNKLAVAARLRSKATIIAIT 114 KGA +V ++ + ++P V D LGA+N+ A + + A+T Sbjct: 59 AAKGAVGALVEREVEGA----TLPQLVVLDTRKALAQLGAMNRNAFVDK-----PVAAVT 109 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTT KEML L + A G+ NN +GVPLTL + + + ELG S +GE Sbjct: 110 GSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGE 169 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + L +PH+A+IT AH+ F G ++I AK EI EGL+ TGT LN +D F + Sbjct: 170 IAYTVSLTKPHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGLDATGTAVLNLEDKAFPI 229 Query: 235 LKAKSHALGIKTIYSFGKSKNA------DFQLRKWKQC------SEQSWMEVQLQGKSME 282 + ++ G + + +F + A D R + C S +VQL Sbjct: 230 WRKRA---GNRAVLTFALADTAADLYASDLS-RDARGCPGFTLNSPLGKAQVQL------ 279 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G H N L L ++ + L+ P +GR + +I Sbjct: 280 ---NLLGAHNVTNALTAAAAACALGVSLEGIVTGLNNVQPVKGRAV---AQIASNGVRVI 333 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEVLS 397 D++YNANPAS+ AA+ VL+ + GR + VLGD+ E+G+ ++ H ++ +V + Sbjct: 334 DDTYNANPASINAAVDVLTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAGKVSA 389 Query: 398 LYNI 401 LY + Sbjct: 390 LYAV 393 >gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 26 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A + + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI F L +PH+A+IT AH+ F Sbjct: 137 NLNNELGVPLTLLELASEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 G ++I AK EI EGL +GT LN +D F + + ++ G + I +F AD Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253 Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + C S +VQL + +G H N L L + Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + A N +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H D+ +V +LY + Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393 >gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] Length = 468 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 150/440 (34%), Positives = 210/440 (47%), Gaps = 49/440 (11%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 ID R P F A G H DGHD+ A + GA VA +GS ++P VD Sbjct: 26 IDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGA---------VAVLGSRPTTLPTVVVD 76 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL +LA V A LR T++AITGS GKT+TK+M+ LSS T A GS+NN + Sbjct: 77 DAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDMIEAVLSSAAPTVATSGSFNNEL 136 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F + E+G H+G+I LT LV P IAV+T + AHL F E IA Sbjct: 137 GVPLTMLRADATTRFLVLEMGARHIGDIAELTGLVAPDIAVVTNVGQAHLGEFGSREAIA 196 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 AK+E+ GL GT L+ DD + L + +FG + A ++R + Sbjct: 197 VAKSELVRGLAGGGTAVLHADDPRVLAMS----DLTDGPVLTFGAGERAGVRVRDLALDR 252 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ ++ + V +G H A N + A AL+ Sbjct: 253 LGRPSFA-LRHDDATAVVTLPFVGAHWALNAAAAAAAGLAAGVGLGQAATALNTASI--- 308 Query: 326 RGKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 ++R L G TL+++SYNANP S +A + L+ I RRIAVLG+M E+GE Sbjct: 309 --SKWRMELRALSGGATLLNDSYNANPESTRAGLDALAAIEAR---RRIAVLGEMLELGE 363 Query: 384 LSQSFHIDLAE--------VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 S+ H ++ VL++ + V G A+ ALP + +D Sbjct: 364 TSRDAHHEIGTYAATRADLVLTVGEAAAVIADGAGAKAV--ALP-----DNAAAID---- 412 Query: 436 FIQSSLVDGDVVVVKSSNSC 455 +++S L GDVV+VK S Sbjct: 413 WLRSHLAPGDVVLVKPSRGA 432 >gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] Length = 450 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/442 (29%), Positives = 205/442 (46%), Gaps = 22/442 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + F A+KG +DGHDF AV GAG ++V+ ++ + P V Sbjct: 24 VTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGALLVSKRLL-----VGAPQLVVK 78 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A R + A ++A+TGS GKT+ KEM L K G++NN IGV Sbjct: 79 DTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGKVLYTAGNFNNDIGV 138 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 139 PLTLLRLTPEYDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 198 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF GL GT +N D + + + H K ++ F +++ DF + Sbjct: 199 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFAPQAAEDIDFYATDVQITP 255 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + ++ + G H N L + + AD+ + L GR Sbjct: 256 QATHFTLHSPFGTVAIELPLPGRHNIANGLAAAALAMSVGADLAAVRQGLMQLQAVPGR- 314 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + L G L+D++YNAN SM AA VL+++ G R+ V+GDM E+G+ + Sbjct: 315 -LFPIQLAAGKL-LLDDTYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGDTAID 368 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445 H + E I V G L DA H + L + ++ Sbjct: 369 CHRQVGEAAKQAGIDKVLSVGTLSQTLSDASGNGEHFQDKSALAARVSELLSEHPVI--- 425 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 V++K S S ++ L E+ Sbjct: 426 TVLIKGSRSAAMENVVRALQEK 447 >gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] Length = 452 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 35/471 (7%) Query: 5 WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ +A G +G + + G+ DSR I + G DGHDFI Sbjct: 4 MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQVFD 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA + D+ G P V+ V AL +A R + II ITGSVGKT+T Sbjct: 64 KGALCTLSEKDLNNPKG----PYIKVESVATALKDIAEFYRKQLSCKIIGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L K G+YNN IG PLT+ ++ + + + E+G+S E+ L + Sbjct: 120 KEIIASVLEEKFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMHRLAKVS 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHA 241 RP + VIT I HL N + + AK E+F+ K + LN DD +K HA Sbjct: 180 RPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVKEVNGHA 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ FG + D K++ Q + ++++ K ++ V GYHM N + + Sbjct: 240 ----PVF-FGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMAAV 294 Query: 301 GIVSI--LTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 I S +T D +D+ I+ L G R G T+ID+ YNANP SMKA+I Sbjct: 295 CIGSYFGMTLDEIDSGIRNLKAI------GGRNNIFTTNG-ITVIDDCYNANPMSMKASI 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +VLSQ + GR++A+LGDM E+GE S+ H ++ + V + + A Sbjct: 348 NVLSQAN----GRKVAILGDMFELGENSKKLHKEVGQAAVGKVDILVCIGNLSKDIAEAA 403 Query: 418 LPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + Y ++ D L +I+ +GD V++K+SN F ++ L Sbjct: 404 IEGGCNTLYFPNKADFEDNLSAYIK----EGDTVLIKASNGMKFKTIVEKL 450 >gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 195/396 (49%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 26 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A + + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI F L +PH+A+IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 G ++I AK EI EGL +GT LN +D F + + ++ G + I +F AD Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLHA 253 Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + C S +VQL + +G H N L L + Sbjct: 254 SDLSNDARGCPGFTINSPLGVAQVQL---------NLLGAHNVTNALAAAAAACALGVTL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + A N +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H D+ +V +LY + Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393 >gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 461 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 224/474 (47%), Gaps = 27/474 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++L+ ++ ++G+ + +++ DSR A F+ IKG +D H F+ + Sbjct: 7 TIGEMLEILETEAVGVPARTLKRKVNLCMDSRESAKGVVFWPIKGARFDAHQFVSQMEKD 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + VVN + + PV +D AL KLA + K +AITGS GKTTTK Sbjct: 67 GALMSVVNQTAIDPNFKMYAPV---EDTTKALLKLAKGYQRLFKLKKVAITGSNGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM LS T+A G++NNHIGVP+TL ++ + + E+G S EIR L+ Sbjct: 124 EMTKAVLSMKYNTHATKGNFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRPLSLATE 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I +HL ++ + + K I GL++ GT+ +N DD +KA H Sbjct: 184 PDIAVITNIGASHLERLGDLDGVFNEKINITAGLKENGTLIVNADDERLCKVKATKHY-- 241 Query: 244 IKTIYSFGKSKN-ADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +FG + + KW + C++ V + G H + L + Sbjct: 242 --KVVTFGVRRGVVKPEKLKWTENLCADFYVGRTHF-------VLNVPGDHNLYDALAAI 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L KAL+ F R + N F +I + YNANP+S K A+ L Sbjct: 293 AVGQALRIPKGDIAKALAGFTSTSMRME----IKNANGFKVISDCYNANPSSTKMALQTL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419 + EG+RIAVLGDM E+G+ S + H + ++ N + G ++ A Sbjct: 349 GNMRV--EGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLLAVGKDAKKYVEGAKS 406 Query: 420 RSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 R + +V Y ET+ + + + +GD+++VK S +++ LL P + Sbjct: 407 RGMKNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVEALLHMVPVFK 460 >gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 452 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSCPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRLVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TAIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. Fw109-5] gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 18/468 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P ++ +L A G +G P + G+S D+R+I P F A++G +DGH ++ A Sbjct: 4 PRFSPDELAAATGGRWMG-APPAELAGVSTDTRTIVPGALFVALRGERFDGHAYLGEASA 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 K + +PV V D L AL +A R R ++ +TGS GKTTT Sbjct: 63 K---GAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +EM+ L++ G+ NN +GVPLTL + + + E+GM+H GEI L + Sbjct: 120 REMIAGILATRGPVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIARLAAIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P++ V+T A AHL ++ +A AKAE+++GL+ TG + N DD +LK ++ A Sbjct: 180 EPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDP--RMLK-RAQAA 236 Query: 243 GIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI--GYHMAQNMLM 298 G + + ++ G + D + + + V G VH G+ ++ Sbjct: 237 GKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAAAA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +S+ +D + A + L+ P G+R R L+D+ YNANPASM AA+ Sbjct: 297 AAAAISLGCSDREIA-QGLAAVRPV---GRRLRLERLASGLRLVDDCYNANPASMSAALR 352 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDA 417 L ++ + R +AVLGDM E+G + H +L + + + G + A Sbjct: 353 TLVDLA-RPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFGPRSRATAEAA 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464 + +++ MD L + +++L DV++VK S RL+ L Sbjct: 412 RAAGLETFHTDDMDALVRWARTALAPPSDVLLVKGSRGMKLERLVEAL 459 >gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] Length = 453 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 219/451 (48%), Gaps = 31/451 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G+ L TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKGRVDMAPLRDD-ITLIDDSYNASVPAMKAAVELLGSFS----AVRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D H+ T + FI+ + Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL----CQGHHFATHQDMMTFIEQHI 421 Query: 442 VD----GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 422 EQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 452 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRLVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TAIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] Length = 453 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 218/465 (46%), Gaps = 24/465 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L A+ IG Q ++ ++ D+R I F A+KG +D HDF AV+ G+ Sbjct: 5 SLQTLADALNAELIGTDTQ--IDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGS 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D AL +L R + A ++ +TGS GKT+ KEM Sbjct: 63 GALLVSKRL-----PVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + DF + E+G +H GEI + T L RP Sbjct: 118 TAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIEMGANHAGEIAYTTALARPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ ++ AHL F + +A AK EIF+GL + G +N D++ + + H L K Sbjct: 178 TALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVINADNNDWANWQ---HKLNGK 234 Query: 246 TIYSFGKS--KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T++ F + + DF + + S++V G H N L + Sbjct: 235 TVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLPVPGRHNIANALAAAALA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A + L+ +GR + +++G TL+D+SYNAN SM AA VL+++ Sbjct: 295 MSVGASPENVRAGLATLQSVKGR--LFPIVISEG-KTLLDDSYNANVGSMTAAAQVLAEM 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G R+ +GDM E+G S+ H + E + I V+ G + D H Sbjct: 352 P----GYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRIISDVSGCGEH 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + E L + S L + V V++K S S +++ L E Sbjct: 408 L---EDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQE 449 >gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] Length = 453 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G+ L TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKGRVDMAPLRDD-ITLIDDSYNASVPAMKAAVELLGSFS----AVRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus helveticus H10] Length = 455 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 122/431 (28%), Positives = 203/431 (47%), Gaps = 17/431 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F ++G DGHDF+ A+ GA + +I V Sbjct: 24 ITSVAFDSRKITTGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PKNITVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VD+ L A+ LA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 EVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L + G N D+ LL+ ++ L + +FG +K Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGFKSY 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + IG H N + + + + +LS F P R Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + + + YN+NP +++A ++ Q+ GRRIAVLGDM E+G+ S Sbjct: 315 MEWEKGDVGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSP 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441 H L + L I+ V+L G + L DAL P ++H + + MD + +++ + Sbjct: 372 ELHAGLCDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDI 431 Query: 442 VDGDVVVVKSS 452 D++V+K S Sbjct: 432 KPDDIIVLKGS 442 >gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Ruminococcus obeum A2-162] Length = 456 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 28/446 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I+ DSR I F I G D H FI + KGA + T + P Sbjct: 28 VSAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMAKGA----LATLSERELSDADYPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + L A+ +A + + +I ITGSVGKT+TKE++ L +T G++NN Sbjct: 84 QITSSLQAVKDIAEFYLQQLQLPVIGITGSVGKTSTKEVIASVLKEKYRTLKTQGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLT+ R+ D + E+G+S GE+ LT + +P VIT I HL N + + Sbjct: 144 LGLPLTVFRLREDDQIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDRDGV 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----R 261 AK EIF + +G I LN DD ++ G+K ++ FG D R Sbjct: 204 LKAKTEIFRSMLPSGHIVLNGDDDKLATVEGYH---GVKPVF-FGLDAKRDVYADQIVSR 259 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K S + + + +V+ G HM N L + I ++ + + Sbjct: 260 GLKGVS----CRIHMGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLE 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GR K + F ++D+ YNANP SMKA++ VL GEGRR+A+LGDM E+ Sbjct: 316 TIRGRFK----MIETENFLVVDDCYNANPMSMKASLDVLHD----GEGRRVAILGDMGEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQ 438 GE S H ++ E + I G L + +A ++ VHY + + L + Sbjct: 368 GENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEAARKADPDFEVHYEKDRESLLKNLG 427 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + GD ++VK+S+ F +++ L Sbjct: 428 GYVRKGDTILVKASHFMKFEEVVDAL 453 >gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 452 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ TA+KA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLTAVKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa DSM 4126] gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa DSM 4126] Length = 436 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 219/441 (49%), Gaps = 27/441 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI DSR + FFA+KGP+++G+ F A+++GA VV++ +I V Sbjct: 16 GICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNTILV--- 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L AL LA R + I+ ITGS GKTT+KE++ L++ K +A G+ NNHIG Sbjct: 73 EDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL+L + D + I E+G +H+GEI + +P +IT I AH+ F G E I Sbjct: 133 VPLSLLSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLITNIGKAHIGEFGGFENIII 192 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+E+F+ L+K G F+N D+ + ++ + S+A+ ++ D QL+ K Sbjct: 193 GKSELFDFLKKNDGVPFINTQDAVLKNMEKRFSNAITF-------PNEGDDLQLKPEKGT 245 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +++ +G S + H +G N+ L I ++ AI+A + P+ R Sbjct: 246 ---AFLRYSTEGFS-HIDTHLVGQFNYLNVAAALCIGKYFEVTMEKAIEATQEYMPENMR 301 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + +T++ ++YNANP SM+ A+ LS I + +LGDM E+G+ ++ Sbjct: 302 SQMIKT----DNYTILLDAYNANPDSMELAMKSLSAIE---NTESVVILGDMLELGDTAE 354 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGD 445 H L E+ IS + G + + A + Y ET D L + + L G Sbjct: 355 LEHEKLGELAVDLGISKRYYCGKQI---QSASKKDNFGKYFETKDELIEHLTAKPLKKGS 411 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 +++K S ++ L++ Sbjct: 412 TILIKGSRKNALEEIVPFLVK 432 >gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis CO72] Length = 494 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 208/466 (44%), Gaps = 63/466 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + + + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WHQDNLKQATQGQWHHSDK--AEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L R R +A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGDLG---RFRREAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIY-SFGKS----KNADFQLRKWKQCSEQSWMEVQLQG------------- 278 S +Y SFG+ + A + + V + G Sbjct: 239 QASK---FTNLYLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATH 295 Query: 279 --------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S+ V IG H N L L ++ K L P + Sbjct: 296 STFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPK 355 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR R L + +ID++YNANP SM AA VL +I VLGD+ E+G+ Sbjct: 356 GRLMR----LPMDGYCIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDA 407 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 + H L L+L I HV G H+ A+ + I HY++ Sbjct: 408 ADDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTD 453 >gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ ++ +P V Sbjct: 27 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGAV----LPQLVV 82 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 83 LDTRKALAQLGAMNRNAFLDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260 + I AK EI EGL+ GT LN +D F + + ++ G + + +F S + AD Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALSDSAADVYAS 254 Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 R + C S VQL + +G H N L + ++ Sbjct: 255 ELSRDARGCPGFIINSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPLE 305 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L+ P +GR + +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIVSNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358 Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+G+ ++ H ++ +V +LY + Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393 >gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] Length = 458 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 215/448 (47%), Gaps = 19/448 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSL 81 P+ V + DSR + P + FFA+ G +DGH+FI KG A +V T M + Sbjct: 22 PETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVAERTRMTGKMPEC 81 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V VD+ AL +LA R + IIA+ GS GKT+TKE+L L T Sbjct: 82 GVIV--VDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELLAGVLKKRLNTLWSEA 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S+NN IGVP TL R+ + E+G +H GE+ L +++P +IT+I HL F Sbjct: 140 SFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVSMIQPKFGIITSIGREHLEFFG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A + + E L G +FLN D + + + ++ A T+ G D+++ Sbjct: 200 DVAGVADEEGWLAELLPADGKLFLNGDSDWTKQIARRTRA----TVVRVGFGAGNDWRVT 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 K + +V KS+ + +G H A N L + + L D + LS Sbjct: 256 DAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFALAVGAELGLTRDHLEQGLS- 314 Query: 320 FHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + + + R L N +ID++YNAN SM AA++ L ++ GRR+AVLGDM Sbjct: 315 ----DCKSAKMRLQLSNWNGICVIDDAYNANADSMLAALNTLQEMPCV--GRRVAVLGDM 368 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLF 436 E+G S++ H ++ ++ ++ ++ G A+ + + SE D Sbjct: 369 AELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSARDAGLAEASEFDDVPAAAAA 428 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +++ L GDVV++K+S S RL +L Sbjct: 429 VKNFLKAGDVVLLKASRSTRLERLFEML 456 >gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] Length = 454 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R+I F A+ G +D H+F A + GAG ++V + ++ P Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRL-----DVNAPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA + +AITGS GKTT KEM+ L G++NN Sbjct: 79 VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F IE + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 AK EI++GL+ G +N D + L ++ L K + +F + ADF Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDTLWQS---VLADKKVITFSHNNSQADFYASNVTM 255 Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E + + + +E+ IG H N + I + A V+ L + Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + LID+SYNA+ +MKAA+ +L G+R +LG+M E+G Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----RGQRWLILGNMAELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441 E S + H + E + HV G + + L IH + E +D + + ++ Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 D ++VK +N + + L E F Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454 >gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga ochracea F0287] gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga ochracea F0287] Length = 444 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 210/453 (46%), Gaps = 45/453 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R+I P +FA+KG ++G+ F A+ KGA V++ D I ++ V Sbjct: 14 GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVID-DPAYHIADKTLLV--- 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DDVL L +LA R + K +I ITGS GKTTTKE++ LS A G+ NN+IG Sbjct: 70 DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + D I E+G +H GEI FL + P IT+I AHL F E + Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189 Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L+ TI N D+ E L + +YSFG + + + QC Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYN-----NVYSFGVGEGVNVSV----QCL 240 Query: 268 EQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLGIVSILTA 308 +++Q S++ G +G + N+ ++ Sbjct: 241 STQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 K + + P+ R + L G T++ ++YNANP+SM AAI L +S + Sbjct: 301 STKAIQKGIESYIPQNNRSQ----LLQWGSNTVLLDAYNANPSSMTAAIDNL--LSMNSF 354 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 ++ +LGDM E+G+ + H + + L+ + + V+L G + K P+ E Sbjct: 355 PNKVLILGDMFELGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQ------YE 408 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 T + ++ ++++K S RLI Sbjct: 409 TFEEFREVFKNLSFQDSLILIKGSRGMALERLI 441 >gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] Length = 513 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 218/469 (46%), Gaps = 40/469 (8%) Query: 27 VNGISIDSRSIAPQE----AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 ++ + IDSR+I AF A+KGP++DGH F +++G L++V+ + A + Sbjct: 33 IDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHRFAEQVIKQGCQLLIVDHHLSAVTDTAQ 92 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V D AL K+A + + ITGS GKTT KEM+ LS + K A G+ Sbjct: 93 LIV---SDTRIALGKIAAFVKKEVAPKTVGITGSSGKTTVKEMVAAILSRLGKVLATNGN 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ DF + E+G +H+GEI + T L +P +AVI IA AHL F Sbjct: 150 FNNDIGVPLTLLRLDNSHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGD 209 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +A AK EIF GL + G N D + + + L KT+ +F A+ K Sbjct: 210 LCGVARAKGEIFSGLGENGVALYNKDTKYTSKWQWR---LTDKTVRTFSCVNKANCYSEK 266 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + LQ + V G H N + I A ++ L+ Sbjct: 267 VS-LDKNGCASFTLQSEQGSCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQM 325 Query: 321 HPKEGR-------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 P +GR K+ C + LID+SYNAN S KAA +LS G+++ Sbjct: 326 QPVKGRLNLHQLENKKTGCNVK-----LIDDSYNANLESAKAAAQLLSSYP----GKQLL 376 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSE 428 +LGDM E+G ++S+H ++ ++ + G + DA + H H+++ Sbjct: 377 ILGDMGELGSEARSYHQEVGGFAKHLQLNTLLSLGVLSQSASDAFAKDNHKNDQSQHFNQ 436 Query: 429 TMD---GLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEFPAI 471 D LF + L G ++VK S S ++ +++ F + Sbjct: 437 RADLMTHLFTMLSQQLSVGQQDIAILVKGSRSAHMEHVVTEIIDWFEQM 485 >gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 454 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 213/455 (46%), Gaps = 49/455 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ I P Sbjct: 29 IEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFENGA---------VATFSEKEISGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A +LA + + +IA+TGS GKT+TK+M+ L++ KTY G+YNN Sbjct: 79 LVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+G H+G+I L+ +V+PHIAV+T I AHL F E+I Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIVQPHIAVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----IYSFGKSKNADFQLR 261 A K +I +G+ G + D L + + S +SKN+ LR Sbjct: 199 AQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIRFGENQEIFVNSIEESKNS---LR 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL--GIVSILTADVDTAIKALSV 319 EQ+ + + L GK Y+ ML ++++ D+ A++ + + Sbjct: 256 FTTNVLEQA-LTLPLSGK----------YNAINAMLAAYVGKLLAVAEEDILEALEHIQL 304 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 G ++ A N ++ + YNANP +M+ + +QI P+ G++IA+L DM Sbjct: 305 ----TGNRTEWKKASNGA--DILSDVYNANPTAMRLILETFAQIVPNQGGQKIALLADMK 358 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSETM 430 E+G S H L + L+ +I H+ G + L + + + Sbjct: 359 ELGPSSVDLHCQLIQALNPDDIDHLIFYGQDIEPLAQLASQMYPIGKVFFFKKTEAEDQF 418 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L+ +Q L D +++K S+S ++N LL Sbjct: 419 EDLYHHVQEILGSNDQILIKGSHSMHLEEIVNRLL 453 >gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 122/431 (28%), Positives = 203/431 (47%), Gaps = 17/431 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F ++G DGHDF+ A+ GA + +I V Sbjct: 24 ITSVAFDSRKITTGGLFVPLEG-ERDGHDFVAGAISNGASATLWKKGHPNK--PENITVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VD+ L A+ LA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 EVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L + G N D+ LL+ ++ L + +FG +K Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLQERAKKLD-QAKATFGFRDEDTVHATGFKSY 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + IG H N + + + + +LS F P R Sbjct: 257 MHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + + YN+NP +++A ++ Q+ GRRIAVLGDM E+G+ S Sbjct: 315 MEWEKGDAGEAIMSDV---YNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSP 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441 H L++ L I+ V+L G + L DAL P ++H + + MD + +++ + Sbjct: 372 ELHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDI 431 Query: 442 VDGDVVVVKSS 452 D++V+K S Sbjct: 432 KPDDIIVLKGS 442 >gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC7] Length = 494 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + IP V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVKCDIPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV G H+ A+ +SI HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 453 >gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 427 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 135/442 (30%), Positives = 211/442 (47%), Gaps = 37/442 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I F A+KG ++D + F A+ KGA V+++ + I V Sbjct: 16 VSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKMILVL--- 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + IIA+TGS GKTTTKE++ + LS A IG+ NNHIGV Sbjct: 73 DSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL D D GI E+G +H EI L + P+ IT AHL F GI+ + A Sbjct: 133 PLTLLSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYITNFGKAHLEGFGGIDGVIKA 192 Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ LE+ T F+N DD E+ K+ + YSF +K +D ++ Sbjct: 193 KSELYNYLEENKQTAFVNLDD---EIQNQKTMQI---MRYSFSIAKESDVKI----DFVV 242 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + M V++ K M++ H IG + A N+ + I D A+ + P R + Sbjct: 243 ANPM-VEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADDDIKDAIQNYIPTNNRSQ 301 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 N +I ++YNANP+SM+AAI+ Q+ +IA+LGDM E+G S Sbjct: 302 LIEKNSN----NIILDAYNANPSSMEAAITNFIQLKAKD---KIAILGDMFELGNDSLIE 354 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI---HVHYSETMDGLFLFIQSSLV 442 H + E ++++G + KD I ++H+ +T + ++ Sbjct: 355 HKKIIE---------LFINGPEIETYFIGKDFYCNKIEMKNIHFFDTYESFSKSFKTRKT 405 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + +++K S R + +L Sbjct: 406 SKNTILIKGSRGMSLERTLEIL 427 >gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 456 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR IAP + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 26 DGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ R + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+ +IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260 G E I AK EI EG+E +GT LN +D F + + ++ I T + + +L Sbjct: 197 GPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGEL 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + M L S +V + +G H N L L ++ + L+ Sbjct: 257 SRDARGCPSFTMASPL--GSAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + +ID++YNANP S+ AA+ +L+ + GR + VLGD+ E Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367 Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401 +GE ++ H D+ +V +LY + Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393 >gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 463 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 126/413 (30%), Positives = 203/413 (49%), Gaps = 29/413 (7%) Query: 6 TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ +G +G V P V+G+S D+R++ + +KG +DGH F + AV+ Sbjct: 4 TLREITHWTRGKLVGGVSDPHLLVDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + N + V IP+ V+D L AL +LA R + ++ ITGS GKTTTK Sbjct: 64 GAAAALWNRE-VPLPKDPPIPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L++ + + G+ NNHIG+PLTL MP D + + E+GM+H GEI L+ + Sbjct: 123 DLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAA 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++T I AHL IA AK EI EG+ TGT+ ++ D+ A Sbjct: 183 PDLALVTNIGEAHLEFLGSRGAIADAKLEIREGMPSTGTLIIDGDEPLLRERLAGEERPV 242 Query: 244 IKTIYSFGKSKNA---DFQLR-----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 I+ FG+S + D +L+ + + + E L GK H A N Sbjct: 243 IRV--GFGESNDDRILDLELKGRAGIAFTSSATDTRFETGLMGK-----------HNALN 289 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L+ + +L +T I+ EG G+R + ++D+SYNA+P +++A Sbjct: 290 ALLGIQAARLLGL-TETGIR--EGLKGAEGSGRRLETSTASNGMLVVDDSYNASPTAVRA 346 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AI L+ + + E + +LGDM E+G ++ H ++ I V+ G Sbjct: 347 AIDWLTSLEDYEE--KWVLLGDMLELGVQEEALHREVGSYAVQQGIPRVFTLG 397 >gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] Length = 461 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 206/450 (45%), Gaps = 15/450 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V +S +SR + P F I G D H FI A+ GA + L Sbjct: 22 PNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAACFTQQEPEEGFKYLD 81 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D AL + A R R ++ +TGSVGK++TKEM+ ALS K+ + G+ Sbjct: 82 GAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKRVHKTAGN 141 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YN+ IG+PLT+ + + + E+GMS+ GE+ L+ + P AV+T I +H+ Sbjct: 142 YNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEMERLSAIASPTSAVVTNIGISHIEQLKT 201 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E I + K I + + + G ++LN DD + L+ I +G + D++ Sbjct: 202 QENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESYTG----KIVWYGMESDCDYRAVN 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + E+ + +++ +G H N L + + +D L + Sbjct: 258 IDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAIAVAYDQGLTLDDIRCGLLTY-- 315 Query: 323 KEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 EG R + L++ T+ID+SYNA+P S+K+ I VL + G++IAVL DM E+ Sbjct: 316 -EGLAMRQQIHELDK--ITVIDDSYNASPDSIKSGIGVLMAVK--STGKKIAVLADMLEL 370 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQ 438 GE S H++L + + V G + + R I V T D F ++ Sbjct: 371 GERSAQAHLELGAYAAASGVDAVLTVGREAEKIAEGAAEESRKILVKACGTNDEAFAELE 430 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L DGD V+VK S ++ LL ++ Sbjct: 431 KILNDGDCVLVKGSRGMHTDEIVQKLLTKY 460 >gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 377 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 193/396 (48%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 7 SGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLV 62 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A R + A+TGS GKTT KEML L + A G Sbjct: 63 VLDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 117 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F Sbjct: 118 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFG 177 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL 260 G + I AK EI EGL GT LN +D F + + ++ G + + +F + + AD Sbjct: 178 GPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---GDRNVLTFALTDSAADVYA 234 Query: 261 ----RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 R + C S VQL + +G H N L + + Sbjct: 235 SELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPL 285 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 286 EGIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GR 338 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H ++ +V +LY + Sbjct: 339 TVLVLGDIGELGEWAEQGHREVGAYAAGKVSALYAV 374 >gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 459 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 217/448 (48%), Gaps = 24/448 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 QG VN D+R + F + G DGHDFI A KGA L ++ + ++ S Sbjct: 32 QGAVN----DNRKVEKDFLFIPMVGARVDGHDFIEDAFSKGA-LASLSERKLENV---SG 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V+D AL ++A R++ +I + GSVGKT+TKEML+ L++ G++ Sbjct: 84 PYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGKTSTKEMLSSVLATKFNVLKTEGNF 143 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ R+ + + E+G+S GE+ L + +P V+T I HL Sbjct: 144 NNEIGLPLTICRIKDEHQVAVVEMGISDFGEMHRLGDIAKPDYVVMTNIGQCHLEFLKSR 203 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + I AK E+FE + K GT+ LN DD +L+ A + LG+ I+ +G + Sbjct: 204 DGILQAKTEVFEHMPKNGTVILNGDDD--KLINADT--LGLNKIF-YGLNGQEVSASDIV 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + L G+S E G H N L + +L + K L Sbjct: 259 AEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTI 318 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + T+ID+ YNANP SMKA+I VL + +P GR IAVLGDM E+G+ Sbjct: 319 AGRNN----VIEVRDITIIDDCYNANPVSMKASIEVLGK-AP---GRTIAVLGDMGELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSS 440 + H ++ + L +I +V+ G + ++L + S H+ ++ + + Sbjct: 371 DERQLHYEIGQTLEDNHIGYVFTVGDLSEEINNSLSQKNSSCMAHHYTNVEAMLEDLLPI 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + GD ++VK+S+ F ++ + F Sbjct: 431 IRGGDTILVKASHFMNFSTVVEAIQTRF 458 >gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] Length = 469 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 128/399 (32%), Positives = 192/399 (48%), Gaps = 44/399 (11%) Query: 5 WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT LL+A QG+ + P + I DSR +AF A+KG +D H FI ++ Sbjct: 14 WTAAQLLEATQGYWLNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V+ + A + L +P D AL +L R ++ + +IA+TGS GKTTT Sbjct: 74 GCQVAIVSQPIDAEVCQLVVP-----DTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS I T G+ NN +GVP+ L + + + + ELG SH GEI + ++LV Sbjct: 129 KEMLGSILSRIAPTLVTRGNLNNDLGVPVMLLELHPEHQYAVMELGASHQGEIDYTSNLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I I AHL F G + I AK+EI+ + GT + D F + ++ A+ Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIR---QAV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---VHHGI--------GYH 291 + + SFG E E++LQ +S G+ G H Sbjct: 246 QTEQVLSFGAG-------------GEIFATEIELQAQSATFKLNTPQGVRQVNLPFAGEH 292 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANP 350 QN + +D + L ++ G + R + QG LID++YNANP Sbjct: 293 NVQNATAAAAFALAIGISLDDIVLGL-----EQAVGAKGRLNFIQQGRHLLIDDTYNANP 347 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 SM+AA VL+Q EG R+ V+GD+ E+G + H Sbjct: 348 TSMRAAAEVLAQ----QEGVRVMVMGDIGELGSSAAQQH 382 >gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1] gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1] Length = 440 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 216/438 (49%), Gaps = 30/438 (6%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIPVFGVD 89 IDSR F +KG DGHDFI A++KG+ L + TD I VD Sbjct: 29 IDSRKAQKDSFFVPLKGSKADGHDFIDDALKKGSSGYLTSIETDYKNGIL--------VD 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL ++ + R + K + ITG+ GKTTTKE+L LS I + YA G+YNN IG+ Sbjct: 81 DTLKALTEIGIFKRKKLKKAV-GITGTSGKTTTKEILRFLLSDIFRVYATEGNYNNEIGL 139 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL+ +P + + G+FELG S G+I L + +P + V+T++ H+ F E + Sbjct: 140 PLTLSNIPENTEVGVFELGASKRGDISKLVSISKPEVRVLTSVGHGHIEGFGSFEGVVQG 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EIF+G E + L D + + + K + +FG S AD ++ + E Sbjct: 200 KGEIFDGGEIS---VLPEDLKIYYMDRLKKYV-------TFGISDYADIKISEINITPEG 249 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V + + + + N+ L ++ L + + + L F EGRGK Sbjct: 250 TAGTVSYKNDKIRITVPVYSRALFNNIAAALSVLYALDINPVRSAEKLRDFSLPEGRGK- 308 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L +G T+ID+SYNANP S+K AI LS I R+ +LGDM E+G+LS+ H Sbjct: 309 ---VLRKGSLTVIDDSYNANPLSVKNAIETLSGIPSF----RVLILGDMLELGDLSEQMH 361 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVV 448 I + + + +I + L G + + ++ + + L+ + S+ D + V++ Sbjct: 362 IKVGKEILSSDIDLILLYGRETYHTYTVIKDKKNSYHFDDKEKLYRKLMDSIKDKECVLL 421 Query: 449 VKSSNSCGFYRLINLLLE 466 VK S +I +L+ Sbjct: 422 VKGSRGMRMEDIIEKVLQ 439 >gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 219/448 (48%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320 S+ V G EV V GI M Q+ + + L+ ++ ++ + + Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S + H + E + + V G + D + + M + I+ Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] Length = 454 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 133/448 (29%), Positives = 219/448 (48%), Gaps = 21/448 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ +S D+R+I F A+ G +D H+F AV GAG ++V + +++P Sbjct: 23 LIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGAGALLVQKHL-----DVNVPQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +LA + +AITGS GKTT KEM+ L K G++NN Sbjct: 78 VVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ Sbjct: 138 DIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRK-- 262 + AK EI++GL +N D S ++ L K + +F +S + AD+ Sbjct: 198 VKQAKGEIYQGLAAGSIAIVNLDSSGETKWES---VLADKEVITFSQSNSAADYYASNIV 254 Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 E S+ + + + +E+ IG H N + I + A ++ L H Sbjct: 255 MNAAGEASFNLHIAASSQEIELSLGIIGQHNVANAIAASIIALQMGATLEEVRAGLK--H 312 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G+ AL++ LID+SYNA+ +MKAA+ +L+ G+R +LG+M E+ Sbjct: 313 LNKVKGRVEVEALSEK-IKLIDDSYNASVPAMKAAVDLLAAFP----GQRWLILGNMAEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440 GE S + H + E + HV G + + L + IH + E ++ + + + Sbjct: 368 GEESLALHRQVGEYAAPQKFEHVLTYGADAKVISE-LCQGIHFETHQEMIEYIKQHLDQA 426 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + ++VK +N + + L E + Sbjct: 427 VPENHTILVKGANGARMFEVAAALKEYY 454 >gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces himastatinicus ATCC 53653] Length = 475 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 143/450 (31%), Positives = 215/450 (47%), Gaps = 24/450 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR + P F A+ G H DGHD+ AV+ GA V V S +P V Sbjct: 31 VVIDSREVRPGSLFAALPGEHVDGHDYARGAVEAGA--VAVLATRPVSTPDAPVPALVVP 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV+ A+ +A A R T++A+TGS GKT+TK+++ L T GS+NN IG+ Sbjct: 89 DVVAAMGAIARAVVERLGTTVVALTGSAGKTSTKDLIAQLLQRHGPTVWTHGSFNNEIGL 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT R + E+G G IR+LT L P I ++ + AH+ F G E+IA A Sbjct: 149 PLTALRADTTTQHLVLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGEFGGREQIAEA 208 Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ E L E G LN DD + +++ A +T+ FG++ +A + + Sbjct: 209 KGELVEALPSAEDGGVAVLNADDPLVRAMASRTKA---RTVL-FGEAGDAHVRASNVRLA 264 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + +V G H N L + VD ALS + G Sbjct: 265 DGGRPAFTLHTPTGCGDVTMRLYGEHHVSNALAAAAVAHETGMSVDEIAVALS----EAG 320 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382 + R+R + + T+++++YNANP SM+AA+ L+ + GRR AVLG M E+G Sbjct: 321 QLSRWRMEVTERSDGVTVVNDAYNANPESMRAALRALAAMGAATPGRRTWAVLGPMAELG 380 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436 + S + H + + N+S + G A D ++ VH S+ + L Sbjct: 381 DESLAEHDAVGRLAVRLNVSKLVAVGGREAAWLDMGAKNEGSWGEESVHVSDVRAAVDL- 439 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++S L GDVV+VK+S S G +L LLE Sbjct: 440 LRSELRPGDVVLVKASRSVGLEQLAQALLE 469 >gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Capnocytophaga ochracea DSM 7271] gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Capnocytophaga ochracea DSM 7271] Length = 444 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 47/460 (10%) Query: 24 QGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 Q ++N G+S D+R+I P +FA+KG ++G+ F A+ KGA V++ D I Sbjct: 7 QRYINSAGVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVID-DPAYHIADK 65 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++ V DDVL L +LA R + K +I ITGS GKTTTKE++ LS A G Sbjct: 66 TLLV---DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQG 122 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN+IGVPLTL + + D I E+G +H GEI FL + P IT+I AHL F Sbjct: 123 NLNNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFG 182 Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E + K E+++ L+ TI N D+ E L + +YSFG + + Sbjct: 183 SFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYN-----NVYSFGVGEGVNVS- 236 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLG 301 QC +++Q S++ G +G + N+ ++ Sbjct: 237 ---AQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVA 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 K + + P+ R + L G T++ ++YNANP+SM AAI L Sbjct: 294 FGRYFKLSTKAIQKGIESYIPQNNRSQ----LLQWGSNTVLLDAYNANPSSMTAAIDNL- 348 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +S + ++ +LGDM E+G+ + H + + L + + V+L G + K P+ Sbjct: 349 -LSMNSFPNKVLILGDMFELGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQ- 406 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 Y + +F + S D ++++K S RLI Sbjct: 407 ----YETFEEFREVFKKLSFQD-SLILIKGSRGMALERLI 441 >gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] Length = 456 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 27 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 83 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260 + I AK EI EGL+ GT LN +D F + + ++ G + I +F + + AD Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNILTFALTDSAADVYAS 254 Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 R + C S VQL + +G H N L + ++ Sbjct: 255 ELSRDARGCPAFNLNSPLGTARVQL---------NLLGTHNVSNALAAAAAGCAMGVPLE 305 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L+ P +GR + +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358 Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+G+ ++ H ++ +V +LY + Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393 >gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] Length = 453 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 217/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A+ +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + + + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL + +N D + E KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S++ V G+ ++V IG H N L + + A + L+ H Sbjct: 256 NALGVASFILVTPIGE-VDVELGIIGQHNVGNALAAAALSLEMGASLAEVRHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L + LID+SYNA+ +MKAA+ +L S R +LG+M E+G+ Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + V G + D H+ T + FI+ + Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423 Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum gryphiswaldense MSR-1] Length = 304 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 171/306 (55%), Gaps = 6/306 (1%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 +FELGM+H GE+ LT +VRPH+AVITTI H + F+ E+IA AKAEIF G+E GT+ Sbjct: 1 MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLGVEAGGTV 60 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 L D+ F L A + A GI SFG +AD ++ + + + L+ ++ Sbjct: 61 ILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALAF 120 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L L V L D + A ++L+ P +GRG+R+ A G +ID Sbjct: 121 RVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVID 180 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ESYNA+P SMKAAI+ L+ P GRRIAVLGDM E+G+ + + H LAE +L+N Sbjct: 181 ESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTDL 240 Query: 404 VWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 V +G + L ALP R IH S + GL I++ + GDVVVVK S ++ Sbjct: 241 VCTAGPLMAHLHQALPATRRGIHAANSTELAGL---IKTVIKPGDVVVVKGSAGSRMAQV 297 Query: 461 INLLLE 466 + LLE Sbjct: 298 VKALLE 303 >gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68] gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68] gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] Length = 483 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 147/451 (32%), Positives = 216/451 (47%), Gaps = 32/451 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ + ++ +A+ G IG N +S DSR P F AI+G DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVA 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116 +GA + +V+ + V S G I V D LG L + + R L II +TGS Sbjct: 59 KTAGQGATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGS 117 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GEI Sbjct: 118 VGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA 177 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 178 RLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMA 237 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYH 291 L + FG + + ++R +++S + V G VH GI G H Sbjct: 238 ----GLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRH 292 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESY 346 N L + +T + L+ H +R AL+ +G FTLID+S+ Sbjct: 293 NVMNALAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSF 348 Query: 347 NANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SMKA ++ L + + E R+A+LG M E+G + H + I + Sbjct: 349 NANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAI 408 Query: 405 WLSGF----HVLALKDALPRSIHVHYSETMD 431 G H+ AL AL S ++D Sbjct: 409 IAVGSAQDQHLDALAQALADGARQSQSASVD 439 >gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 453 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 219/448 (48%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320 S+ V G EV V GI M Q+ + + L+ ++ ++ + + Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S + H + E + + V G + D + + M + I+ Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] Length = 966 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 230/476 (48%), Gaps = 22/476 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ D+ +A + + + I D+R IA F A++G +DG DF AV+KG Sbjct: 501 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 560 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V D + + V D L A ++A A R + ++AITGS GKTTTK+ Sbjct: 561 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 620 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + +YNN IG+PLTL + + + E+GM LG+I L L P Sbjct: 621 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++T + H+ IE IA AKAE+ E +E GT+ LN DD+ ++ K+ A G+ Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA-GV 739 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGI-----GYHMAQNML 297 + + +FG S++AD +R + M L+ K+ + H + G H N L Sbjct: 740 RVV-TFGLSRDAD--VRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNAL 796 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + +L + + L+V ++ R +C G +T ++++YNA+P S +A++ Sbjct: 797 AAIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASL 852 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+++ GR+IAVLGDM E+G S+S H + E + + V G + +A Sbjct: 853 KTLAEMFA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEA 909 Query: 418 LPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ V E M + ++ L GD V+ K S +I LL + A Sbjct: 910 -AKAGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 964 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 35/276 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +L ++G I + I DSR + F AI+G H DGH FI AV+K Sbjct: 1 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVG 118 GA ++ ++ G+ + V V ++ AL + +R K II ITG+ G Sbjct: 61 GACAILTEREIEIPEGAAA--VLRVPNLAAALEVIVPFFHDYPSR---KMRIIGITGTNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN---NHIGVPL------------TLARMPVD-VDF 162 KTTT M L IG+ +P+ TLA M +DF Sbjct: 116 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 175 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221 + E+ L + R + AV T + HL +E AKA +F+ + + G Sbjct: 176 VVMEVSSHALDQNRVAG--IEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGA 233 Query: 222 ----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 T +N DD+ E + A HA Y+ K Sbjct: 234 KEGKTAVVNDDDAAGETMLA--HAKCAHLTYAVKKE 267 >gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 460 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 225/457 (49%), Gaps = 55/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS++I F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VDD L AL +LA R +I ITGS GKTT K+++ L S + + Sbjct: 83 PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +AVIT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 +EIA AK EI +GL + G N D+ K+ ++ KT Sbjct: 203 LGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLS-RNNKTSSVNCKTFSE---------- 251 Query: 260 LRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILT 307 K ++ VQL G ++ H I Y H N+ T+ GI + T Sbjct: 252 ----KDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVST 307 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++ +++ R++ + FT+I++++NA+P+SMKAAI L +++ + Sbjct: 308 EKIQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY- 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 ++I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ H+ Sbjct: 361 -KKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAEFVAEEARKNYHIGKV 419 Query: 428 ETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 ++ D + L DVV++K S ++ Sbjct: 420 QSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIV 456 >gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio parahaemolyticus 10329] Length = 454 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R+I F A+ G +D H+F A + GAG ++V + ++ P Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVEKRL-----DVNAPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA + +AITGS GKTT KEM+ L G++NN Sbjct: 79 VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F IE + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 AK EI++GL+ G +N D + L ++ L K + +F + ADF Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADKKVITFSHNNSQADFYASNVTM 255 Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E + + + +E+ IG H N + I + A V+ L + Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + LID+SYNA+ +MKAA+ +L G+R +LG+M E+G Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----HGQRWLILGNMAELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441 E S + H + E + HV G + + L IH + E +D + + ++ Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 D ++VK +N + + L E F Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454 >gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] Length = 452 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 16/383 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++ D+R + F A+ G +D HDF A+ GA ++V+ + +S+P Sbjct: 24 LNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGAQALLVSKHL-----PVSVPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D A +L+ R +S A ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 79 VVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVP+TL R+ + + + ELG +H GEI + T LV+P A++ +A AHL F + + Sbjct: 139 YGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQ 265 A AK EIF+GL G LN + + + + L KT++ F A DF R + Sbjct: 199 AKAKGEIFQGLPANGIAILNEESNDWPNWQT---TLQDKTVWRFSPQAAACDFSARDIRI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + ++ E+V G H N L + + A + + L G Sbjct: 256 AQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R + +Q L+D+SYNAN SM AA+ VLS++ G R+ V GDM E+G+ + Sbjct: 316 RLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVLVAGDMAELGDET 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 + H ++ + I V G Sbjct: 369 EKCHREIGDAARDAGIDRVLSCG 391 >gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 184/387 (47%), Gaps = 31/387 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R + F A+KG +D HD+ AV+ GA ++V+ + + +P Sbjct: 24 IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHL-----PIDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L +L R +S A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 LVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + T LVRP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIF GL G +N D + F + L KT++ F D Sbjct: 199 AQAKGEIFAGLPADGVAIVNADSNDFPHWQVT---LNHKTVWRFSPQAACDIDFFA---- 251 Query: 267 SEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 S ++V QG +V+ G H N L + + A ++ L Sbjct: 252 ---SDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMSVGATLEAVKAGL 308 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S GR + AL++G L+D+SYNAN SM AA VL+++ G R+ V+GD Sbjct: 309 SQLQAVPGR--LFPIALSEGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGD 361 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ + H + E + I V Sbjct: 362 MGELGDDAPECHRQVGEAARVAGIDRV 388 >gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] Length = 499 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 189/373 (50%), Gaps = 26/373 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F AI G DGHDF+ +GA +V+ + VA G +P VDD + Sbjct: 42 DSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHE-VADAG---VPQIVVDDTV 97 Query: 93 GALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 AL +LA R +A T+I ITGSVGKTTTK+++ LS++ +T A +GS+NN I Sbjct: 98 RALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEI 157 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLT ++ F + E+G +H+GEI LT LV P IAV+ + AHL F E IA Sbjct: 158 GLPLTALKVNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIA 217 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC 266 AK+EI +GL G LN +D + A G + + + D + +C Sbjct: 218 QAKSEIVKGLVPGGVTVLNANDEHVAAMSGI--APGEVLWFGLPQRRTPDRMVAAENVRC 275 Query: 267 SEQSWMEVQLQGKSMEV--VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E +L+ E V+ GI G H N L +V L +D L+ Sbjct: 276 DELDHPSFELRDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVK-- 333 Query: 324 EGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLG 376 R +R A++ + FTLID+S+NANP SMKA + L + + E + RIAVLG Sbjct: 334 --RISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLG 391 Query: 377 DMCEMGELSQSFH 389 M E+G ++ H Sbjct: 392 AMLELGPDERALH 404 >gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 221/459 (48%), Gaps = 21/459 (4%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++++A+ G I G N IS D+R I F A+KG +++G+ + + A++KGA + Sbjct: 6 QEVIEAVNGEIIVKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKGASV 65 Query: 68 VVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V+V+ + + S G+ V V D AL LA R + ++ ITGS GKT+T Sbjct: 66 VIVDEIKFEKEDLKSKGT----VIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTST 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D D + E+G S+ GEI L + Sbjct: 122 KDLIAAFLSGKYKVFKTQGNFNNEIGLPLMIFELNKDYDVAVLEMGTSNFGEINTLAGIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IA IT + AH+ E I K I + + + +N ++ + +K + H Sbjct: 182 LPDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDDSCLVINCENDMLKTVKDEDHK- 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I I G K+ + + + SE + + + + + +G H N L+ + I Sbjct: 241 NI-NIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNALLGIQI 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + K L F R + + FT+I++SYNANP SMKAAI+VL Sbjct: 300 SKDLGLKFEEMEKGLDNFKATSMRLE----FIKHNKFTIINDSYNANPDSMKAAINVLKS 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + R+IAVLG M E+G+ + H ++ E + + +G + + K+ + Sbjct: 356 YTGD---RKIAVLGTMGELGDYANIAHKEVGE-FAKGKADILLTTGEYKDSYKEGFGTNT 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V +T D L + S + D D ++VK+S S F +I Sbjct: 412 LVF--DTKDDLIKSLNSMIKDEDTILVKASRSAKFEEII 448 >gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] Length = 448 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 136/472 (28%), Positives = 216/472 (45%), Gaps = 37/472 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W D+ +A+ G + G F ++ DSR+ F A+KG +DGH++I AV +G Sbjct: 5 WLTDDIAKAVGGAAEGD-SVAFTR-VTTDSRADCSGALFVALKGDRFDGHEYIDAAVSQG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ A + + +P D L L +L R R + A+TGS GKTT KE Sbjct: 63 AVAVMAQAKANADVAQIIVP-----DSLAGLGRLGALNRSRFNGPVAAVTGSAGKTTVKE 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS G++NNHIGVPL+L ++ + +FELG S +GEI + L RP Sbjct: 118 LLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAYTVALARP 177 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ A H+ F + I AK EI GL + G LN DD+ F A G Sbjct: 178 QVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANF---SAWVEMAGA 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGI-------GYHMAQN 295 + + SFG +A + + + ++L G + + GI G H +N Sbjct: 235 RKVISFGLDDSAMVRAQN---------IHLELNGSTFRLSAPEGGIDATLPLPGAHNVRN 285 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L ++ L+ P +GR + L ++D++YNA+P SMKA Sbjct: 286 ALAAAAAALALGWTLEEVRDGLASAAPVKGRMNKL---LGINGSVILDDTYNASPTSMKA 342 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI VL++ GRRI LG M E+G +++ H ++A+ + + G + Sbjct: 343 AIDVLARYP----GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDMLLGIGRWAAEYR 398 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + V T D + +++ L V+VK S S ++ ++E+ Sbjct: 399 EGFGDESPV--VTTHDDIAAWLRERLDSNTTVLVKGSRSAAMENVVKQIVEK 448 >gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 27 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 83 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260 + I AK EI EGL+ GT LN +D F + + ++ G + + +F + + AD Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYAS 254 Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 R + C S VQL + +G H N L + ++ Sbjct: 255 ELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAAAAASCAMGVPLE 305 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L+ P +GR + +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358 Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+G+ ++ H ++ +V +LY + Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393 >gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] Length = 968 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 230/476 (48%), Gaps = 22/476 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ D+ +A + + + I D+R IA F A++G +DG DF AV+KG Sbjct: 503 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 562 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V D + + V D L A ++A A R + ++AITGS GKTTTK+ Sbjct: 563 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 622 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + +YNN IG+PLTL + + + E+GM LG+I L L P Sbjct: 623 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++T + H+ IE IA AKAE+ E +E GT+ LN DD+ ++ K+ A G+ Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKA-GV 741 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGI-----GYHMAQNML 297 + + +FG S++AD +R + M L+ K+ + H + G H N L Sbjct: 742 RVV-TFGLSRDAD--VRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNAL 798 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + +L + + L+V ++ R +C G +T ++++YNA+P S +A++ Sbjct: 799 AAIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKC----GAYTFVNDAYNASPVSTRASL 854 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+++ GR+IAVLGDM E+G S+S H + E + + V G + +A Sbjct: 855 KTLAEMFA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEA 911 Query: 418 LPRSIHVHYSETM---DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ V E M + ++ L GD V+ K S +I LL + A Sbjct: 912 -AKAGGVPLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 966 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 35/276 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +L ++G I + I DSR + F AI+G H DGH FI AV+K Sbjct: 3 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVG 118 GA ++ ++ G+ + V V ++ AL + +R K II ITG+ G Sbjct: 63 GACAILTEREIEIPEGAAA--VLRVPNLAAALEVIVPFFHDYPSR---KMRIIGITGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN---NHIGVPL------------TLARMPVD-VDF 162 KTTT M L IG+ +P+ TLA M +DF Sbjct: 118 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 177 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221 + E+ L + R + AV T + HL +E AKA +F+ + + G Sbjct: 178 VVMEVSSHALDQNRVAG--IEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGA 235 Query: 222 ----TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 T +N DD+ E + A HA Y+ K Sbjct: 236 KEGKTAVVNDDDAAGETMLA--HAKCAHLTYAVKKE 269 >gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] Length = 456 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 222/468 (47%), Gaps = 32/468 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W + QA+QG IG ++G+S D+R+I + F A+ G ++D HDF+ A+ G Sbjct: 3 WLLSQVAQAVQGRLIGADVS--IDGVSTDTRAITEGQLFIALAGENFDAHDFLAPAIAAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V + G +P VDD AL +LA A R + +IA+TGS GKTTTKE Sbjct: 61 ATALMVADESKVPTG---VPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKE 117 Query: 125 MLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 M+ L + + G+ NN IG+PLTL + + E+GM+H GEI +L + Sbjct: 118 MVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYLAPIG 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +A+IT AHL ++E+A K IF GL G +N DD++ L + + Sbjct: 178 APTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWRGMA--- 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G + + +FG AD K +Q + +E+ ++ G H A+N + Sbjct: 235 GGRPVRTFGIDNAADVSA-KVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAA 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + I L F +GR +R QG ++D++YNANP S++A I VL+ Sbjct: 294 CLAAGIPMVAVIAGLEAFSGVKGRLQRRTG--KQG-AEILDDTYNANPDSVRAGIDVLAA 350 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 GR++ VLGDM E+GE S +H ++ I ++ AL +A +++ Sbjct: 351 TI----GRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLF-------ALGEAAQQAV 399 Query: 423 H------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 HY +D L + L V+VK S R+ + L Sbjct: 400 RNFGEGAKHYC-NVDKLIAAVDKELGPETTVLVKGSRFMKMERVADAL 446 >gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 193/395 (48%), Gaps = 50/395 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 27 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 82 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 83 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 138 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL- 260 + I AK EI EGL+ GT LN +D F + + ++ G + + +F + + AD Sbjct: 198 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYAS 254 Query: 261 ---RKWKQC------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 R + C S VQL + +G H N L + ++ Sbjct: 255 ELSRDARGCPAFTLNSPLGTARVQL---------NLLGTHNVSNALAVAAASCAMGVPLE 305 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L+ P +GR + +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 306 GIVTGLNNVQPVKGRAV---AQIASNGTRVIDDTYNANPASINAAVDILTGFT----GRT 358 Query: 372 IAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+G+ ++ H ++ +V +LY + Sbjct: 359 VLVLGDIGELGDWAEQGHREVGAYAAGKVSALYAV 393 >gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 30/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 ++ I+ DSR I F I G D H FI + KGA +A++ +P Sbjct: 28 ISAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMTKGA---------LATLSERELPEA 78 Query: 85 ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD L A+ +A + + ++ ITGSVGKT+TKE++ L +T G Sbjct: 79 DYAYIQVDASLQAVKDIAEFYLEQLQIPVVGITGSVGKTSTKEVIASVLKEKYRTLKTQG 138 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN +G+PLT+ R+ + + E+G+S GE+ LT + +P VIT I HL N Sbjct: 139 NFNNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLG 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + + AK EIF+ ++ G I LN DD +L+ + + G+K ++ FG + D Sbjct: 199 DRDGVLKAKTEIFQSMKPNGHIVLNGDDD--KLITVREYN-GVKPVF-FGLNSERDVYAD 254 Query: 262 KWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + + L + +V+ G HM N L + I ++ + + Sbjct: 255 QIESKGLKGVACRIHLGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESL 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 GR K + F ++D+ YNANP SMKA++ VL GEGRR+A+LGDM E Sbjct: 315 ETIRGRFK----MIETDKFLVVDDCYNANPMSMKASLDVLHD----GEGRRVAILGDMGE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFI 437 +GE + H + ++ I G + + +A ++ V+Y +T + L + Sbjct: 367 LGEDEAALHEGVGIHAAICGIDACVCVGDLAVHIAEAARKANPDFPVYYEKTRESLLEHL 426 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GD ++VK+S+ F ++ L E Sbjct: 427 NDYVQKGDTILVKASHFMKFEEVVKALEE 455 >gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 452 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ HI Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHIQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sputigena Capno] gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sputigena Capno] Length = 443 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 208/455 (45%), Gaps = 45/455 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R+IA +FA+KG ++G+ F A++KGA V+ D VA S + V Sbjct: 13 GVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVI--DEVAY--QTSDKMILV 68 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL L +LA R K +I ITGS GKTTTKE++ LS A G+ NN+IG Sbjct: 69 SDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNLNNNIG 128 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + D I E+G +H GEI FL ++ +P IT+I AHL F E + Sbjct: 129 VPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSFEGVIQ 188 Query: 209 AKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L+ TI N D+ E L A YSFG K + + QC Sbjct: 189 TKGELYDYLKAHQKTIIANADNPITEALLAD-----YDNDYSFGVGKGVNVAV----QCV 239 Query: 268 EQSWMEVQLQGKSMEVVHHG-------------------IGYHMAQNMLMTLGIVSILTA 308 + +Q + S + G +G + N+ + Sbjct: 240 GTQPVTIQFEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAAVAFGKFFKL 299 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + + + P+ R + + N T++ ++YNANP+SM AAI L +S E Sbjct: 300 SNEAIKRGIEAYIPQNNRSQLMQWGSN----TVLLDAYNANPSSMAAAIDNLLTMSD--E 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 +++ +LGDM E+G + H + + L Y V+L G + + P+ E Sbjct: 354 KKKVLILGDMFELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQ------YE 407 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 T + + + ++++K S RLI + Sbjct: 408 TFEAFKEVFPTLSFNNCLLLIKGSRGMALERLIQV 442 >gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 480 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 145/446 (32%), Positives = 213/446 (47%), Gaps = 31/446 (6%) Query: 6 TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ +A+ G IG N +S DSR P F AI+G DGHDF+ + Sbjct: 2 SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA + +V+ + V S G I V D LG L + + R L II +TGSVGKTT Sbjct: 61 GATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GEI LT + Sbjct: 120 TKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARLTRI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P+ A++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 180 APPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMA----G 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYHMAQNM 296 L + FG + + ++R +++S + V G VH GI G H N Sbjct: 236 LANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRHNVMNA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESYNANPA 351 L + +T + L+ H +R AL+ +G FTLID+S+NANP Sbjct: 295 LAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSFNANPD 350 Query: 352 SMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 SMKA ++ L + + E R+A+LG M E+G + H + I + G Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGS 410 Query: 410 ----HVLALKDALPRSIHVHYSETMD 431 H+ AL AL S ++D Sbjct: 411 AQDQHLDALAQALADGARQSQSASVD 436 >gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 7169] gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC1] Length = 494 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV G H+ A+ +SI HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTATAINEQKSIARHYTD 453 >gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] Length = 459 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 202/440 (45%), Gaps = 19/440 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+RS+ + F A+KG +D HDF+ A +GA + + + A+ +P V Sbjct: 27 VHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQGAVAAIAHHGLAAA----GLPGLEVA 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHI 147 D AL +LA R + +IA+TGS GKTT +M+ L + K T +A G+ NN I Sbjct: 83 DSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVTQMIAAILRAWKSTQAFATEGNLNNDI 142 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ G+ ELGM+H GEI +L L +P +A++ HL + +E +A Sbjct: 143 GVPLTLLRLRASHAVGVVELGMNHPGEIAYLAALAKPGVALVNNAQREHLEFMATVEAVA 202 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + + L G DD + + + + G + + +F ++ AD + Q S Sbjct: 203 RENGSVLQALGTDGIAVFPADDDYTAIWRGLA---GARRVLTFAQTGPADVTAQ--AQWS 257 Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 W + + ++ H G H +N L + LS F P +GR Sbjct: 258 GDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATACALAAGVPLPVIAAGLSEFAPVKGR 317 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + L TLID++YNANP SM+AAI VL+++ R+ V+GDM E+G+ Sbjct: 318 SRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLAELP----APRLLVMGDMGEVGDQGP 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 FH + I ++ G A H+S+ D L + + L Sbjct: 374 QFHEEAGRYAHARGIEQLFTLGAQSQRASTAF--GAGRHFSQMAD-LAAAVVAELPQAGS 430 Query: 447 VVVKSSNSCGFYRLINLLLE 466 V+VK S +++ ++ + Sbjct: 431 VLVKGSRFMKMEQVVQVIAD 450 >gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] Length = 471 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 223/464 (48%), Gaps = 46/464 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 V G SIDSR++ E FFA+ G +DGH+F+ A++ GA VV+ V S L Sbjct: 24 VVGYSIDSRTVGAGELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVVSAEVDPCKLL 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P G D VL AL KLA R +I +TGS GKTTTKE + L++ K G Sbjct: 84 RVP-DGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKTTTKECVAAVLAAKFKVLKSAG 142 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NNH GVPL L R+ + + E+GM+H GEI L + P AV++ +A HL F+ Sbjct: 143 NLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFA 202 Query: 202 -GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G+E IA AK E+ + L G FLN DD F A FG S+ AD + Sbjct: 203 DGMEGIARAKKELVDALPAAGVAFLNADDVFVSTFGEGHEA------RMFGLSETADVRG 256 Query: 261 RKWKQCS-EQSWMEVQLQGKSMEVVHHG------IGYHMAQNML--MTLGIVSILTADVD 311 + K E VQ+ + V +G H N L + +G+ S +T + Sbjct: 257 VEVKNVGLEGMQFVVQVTAREGRVADKMRARIALLGEHNVYNALAAIAVGLESGMT--LG 314 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + AL P + RG+ + LI++SYN+NP +++A + L I GR Sbjct: 315 ECVFALDSVVPSDKRGEM----IEWHGARLINDSYNSNPRALEAMVDALMAIEG---GRH 367 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------LSGFHVLALKDALPRSIH 423 I + G+M E+G+ + H ++ + V L+G ++ +AL Sbjct: 368 IVIAGEMLELGQDAGKLHAASGRQMAKRGVDVVVGVRGFAESLAGVAKMSGAEAL----- 422 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +T + +++++L +GDVV++K+S + + L+E+ Sbjct: 423 --FVKTPEEAGAWMKANLREGDVVLLKASRGVRLEKALASLVED 464 >gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 480 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 145/446 (32%), Positives = 213/446 (47%), Gaps = 31/446 (6%) Query: 6 TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ +A+ G IG N +S DSR P F AI+G DGHDF+ + Sbjct: 2 SVEEIAKAVDGRLIGDAGSESRATNTVS-DSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA + +V+ + V S G I V D LG L + + R L II +TGSVGKTT Sbjct: 61 GATVAIVDHE-VKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GEI LT + Sbjct: 120 TKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARLTRI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P+ A++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 180 APPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVVPMA----G 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGI-GYHMAQNM 296 L + FG + + ++R +++S + V G VH GI G H N Sbjct: 236 LANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTP-VHLGIPGRHNVMNA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGF-FTLIDESYNANPA 351 L + +T + L+ H +R AL+ +G FTLID+S+NANP Sbjct: 295 LAAATVAMRYGMAPETVARILASQHTI----SPHRMALSTVNREGTSFTLIDDSFNANPD 350 Query: 352 SMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 SMKA ++ L + + E R+A+LG M E+G + H + I + G Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGS 410 Query: 410 ----HVLALKDALPRSIHVHYSETMD 431 H+ AL AL S ++D Sbjct: 411 AQDQHLDALAQALADGARQSQSASVD 436 >gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] Length = 457 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 209/445 (46%), Gaps = 42/445 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI+ D+R++ P + F A++G +DGH++ AV+KGA V+ + + L P+ V Sbjct: 32 GITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGALTVIAEATNASQLEGL--PLIQV 89 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 ++ L A ++A R + + +IA+TGSVGKTTTKE++ LS+ +YNN IG Sbjct: 90 ENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELIAAVLSTKGTVLKTQANYNNEIG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL + D D+ + E+ M G+I LT + P + VIT + AH+ E IA Sbjct: 150 VPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTVGVITNVGTAHIGLLGSTEAIAK 209 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ + G LN+D+ I T + + + L + Sbjct: 210 AKCELLAHMSNNGVAVLNHDNQRL-----------IDTAAQVWQGQTLTYGLEGGDVQGQ 258 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 E+ L+ + ME G H A N L L I +L D +T L+V P GR + Sbjct: 259 LIAPEI-LKVEGMEFPIPLPGRHNALNYLAALAIGKLLGVDWETLRNGLNVELPP-GRSQ 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 RY + ++DE+YNA SM AA+ +L+Q R IAVLG M E+G S Sbjct: 317 RYELPND---VVILDETYNAGVESMVAALEMLAQTPGK---RHIAVLGAMKELGTQSGEL 370 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD------------ALPRSIHVHYSETMDGLFLF 436 H + + + N L G +L + ++P + ++ L F Sbjct: 371 HQQVGQKVEQLN-----LDGLRILVDESDPEAEAIATGVTSVPVESFCDSNPLVEHLLEF 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GD ++ K+S+S G +++ Sbjct: 426 VQP----GDRLLFKASHSVGLDQVV 446 >gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] Length = 468 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 132/421 (31%), Positives = 200/421 (47%), Gaps = 31/421 (7%) Query: 5 WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L++A QG+ P+ + I DSR +AF A+KG +D H+F+ + K Sbjct: 14 WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNK 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V + L + V D AL +L R ++ + +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + LV Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I + AHL F G E I AK+EI+ + K GT + D F + ++ HA+ Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG + D + ++ + + EV G H QN Sbjct: 246 QTTQVLSFG--EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAI 357 + +D + L + +GR LN Q F ID++YNANP SM+AA Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGR-------LNFISHKQHLF--IDDTYNANPTSMRAAG 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKD 416 VL+Q S G ++ V GD+ E+G+ + H L L +I+ + G F AL+ Sbjct: 355 EVLAQQS----GIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFLIAVGEFAPAALEG 410 Query: 417 A 417 A Sbjct: 411 A 411 >gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 453 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] Length = 493 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 189/373 (50%), Gaps = 26/373 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F AI G DGHDF+ +GA +V+ + VA G +P VDD + Sbjct: 36 DSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVDHE-VADAG---VPQIVVDDTV 91 Query: 93 GALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 AL +LA R +A T+I ITGSVGKTTTK+++ LS++ +T A +GS+NN I Sbjct: 92 RALGELAKHNLERRRAIGSPFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEI 151 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLT ++ F + E+G +H+GEI LT LV P IAV+ + AHL F E IA Sbjct: 152 GLPLTALKVNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIA 211 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC 266 AK+EI +GL G LN +D + A G + + + D + +C Sbjct: 212 QAKSEIVKGLVPGGVTVLNANDEHVAAMSGI--APGEVLWFGLPQRRTPDRMVAAENVRC 269 Query: 267 SEQSWMEVQLQGKSMEV--VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E +L+ E V+ GI G H N L +V L +D L+ Sbjct: 270 DELDHPSFELRDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVK-- 327 Query: 324 EGRGKRYRCALN-----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGR--RIAVLG 376 R +R A++ + FTLID+S+NANP SMKA + L + + E + RIAVLG Sbjct: 328 --RISPHRMAVSAIVKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLG 385 Query: 377 DMCEMGELSQSFH 389 M E+G ++ H Sbjct: 386 AMLELGPDERALH 398 >gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] Length = 452 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 33/466 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF + Q + SI N IS DSR+I + F A++G +DGH F+ + KGA Sbjct: 13 TFQKISQTLSDKSI--------NKISTDSRTIQENDIFIALQGDKFDGHRFVDEVIDKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++VN + V+ + IP V D L A ++A R K II ITGSVGKTTTKE+ Sbjct: 65 IALIVNHE-VSVKSTKEIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSVGKTTTKEI 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + +YNN IGVP TL + + ++ + E+ M GEI L+ + P Sbjct: 124 IAAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIACPT 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I +IT + AH+ + IA AK E+ + + LN+DD ++ Sbjct: 184 IGIITNVGTAHIGRLGSRQAIAEAKCELLAEMPENSVAILNHDDQRL-----------VE 232 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T + + K + L E +E Q L+ + M+ G H A N L L + Sbjct: 233 TAATVWQGKTITYGLEGGDITGE--LLENQILRVEGMDFPLPLPGRHNALNYLAALAVTK 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D ++ ++V P +GR ++Y + L+DE+YNA SMKAA+ +L + Sbjct: 291 ELNLDWTFLMEGVTVNLP-QGRSQQYSL---KNDVILLDETYNAGLESMKAALQLLKD-T 345 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSI 422 P R +AVLG M E+ + S H ++ E I +++ A+ + +I Sbjct: 346 PG--TRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDDPQSQAITKGVT-TI 402 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 T + L ++ + GD ++ K+SNS G R++ +L++ Sbjct: 403 ETQSFPTHEQLIQRLREVIQPGDRILFKASNSVGLNRVVEAVLQQL 448 >gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] Length = 453 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] Length = 474 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 132/430 (30%), Positives = 205/430 (47%), Gaps = 47/430 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ QA QG + ++ I+ D+R++A Q F A+KG ++D H F+ +A+ G Sbjct: 5 TLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTK 123 A + +V I + V D AL L+ R + K IAITGS GKTT K Sbjct: 65 AKAL-----LVEQASDHDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCK 119 Query: 124 EMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 E+L+ L A G++NN IGVPLTL R+ + F + ELG +H GEI + Sbjct: 120 ELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGEINYTA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV+P +A+I I AHL F + +AS+K EI+ L+ GT +N D F + ++ Sbjct: 180 QLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQTYLSQL 239 Query: 240 HALGIKTIYSFGKS----------------KNADFQLR-KWKQCSEQSWMEVQLQGKSME 282 A G + I++F ++ NA+F L K C+ + +++ G+ Sbjct: 240 QAQG-QCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPGQ--- 295 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 H N L + L ++ K L+ GR R F T+I Sbjct: 296 --------HNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEV---NDFLTII 344 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++YNAN AS+KAAI+VL S ++ +L DM E+G ++ H + E ++ N+ Sbjct: 345 DDTYNANSASVKAAINVLCATST----KQALILSDMGELGTHTELEHQKVGEYAAMQNVP 400 Query: 403 HVWLSGFHVL 412 + G H L Sbjct: 401 LLLAVGTHSL 410 >gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 464 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 217/457 (47%), Gaps = 40/457 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + + I G + +GH ++ A++ GA V+ + + V Sbjct: 30 IQGVCIDSRKVVEGNLYIPIHGVNNNGHAYVQQAIEHGAKAVL--WERKEQNPPHEVVVI 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL +LA A R + ++ ITGS GKT+TK++L L+ T +G++NN Sbjct: 88 LVEDTTVALQQLAKAYRDQLNLKVVGITGSNGKTSTKDILASVLAKHFITQKTLGNFNNE 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + + + E+GM +L E+ FLT++VRP IA+I+ + AHL N +E I Sbjct: 148 IGVPLTLLSLSENCEAAVVEMGMENLNELSFLTNIVRPDIAIISNVGTAHLENLGTMENI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI EGL + G + N D + G I +FGK + D + Q Sbjct: 208 AKAKLEIVEGLNEHGLLIYNGDQQLLRDAAVEKQIPGYIKIRTFGKEAHNDVIVSHVHQL 267 Query: 267 --------SEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 +E W V+H IG H A N L + + Sbjct: 268 EDGLRFSINEDDW------------VYHLDMIGKHQAMNATAAWIAAKALGLSEEEIAEG 315 Query: 317 LSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAV 374 F E G R +NQ ++++SY +NP S AA+ + + P+ ++AV Sbjct: 316 ---FASVEKTGLRNELVKVNQCL--ILNDSYKSNPQSALAAVDTMEEFDIPY----KLAV 366 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETM 430 LGDM E+GE S H L + +S Y+I V G + +D + ++ H+++ Sbjct: 367 LGDMLELGETSDMIHYTLGKDISRYHIQEVLTIGDMACYIAQGARDNMEHTLVRHFTDK- 425 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L +++ + +++VK S ++++L++E Sbjct: 426 EALISYLKPYMHKECMLLVKGSRGMKLDEVVDVLVQE 462 >gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] Length = 470 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 29/467 (6%) Query: 9 DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D L +I G + + P G + ++IDSR F ++G DGH ++ A Q+GA Sbjct: 12 DQLASIVGARL-VAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGA 70 Query: 66 GLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IAITGS 116 +V + + GS + + V D L AL L + I I +TGS Sbjct: 71 SAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIGVTGS 130 Query: 117 VGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKT+TKEML LS + +A G+ N+ IGVPL++ + + + I E+G+ H+GE+ Sbjct: 131 SGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDHVGEM 190 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L +V+P++AV+T I AHL F E IA KA+IF + F+ D+ FF +L Sbjct: 191 DVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEFFHVL 250 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 T +G + F+ W+ + V L K + + G G HM +N Sbjct: 251 VEGWRG----TFLPYGPATVEGFE--GWESRGLEG---VILSWKGLRIPLQGYGEHMVRN 301 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L + L + P GRG+ G + L+D YNANP SM+A Sbjct: 302 ALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEIG---GVWFLVD-CYNANPESMRA 357 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 ++ + + G RRI VLG M E+G+ + S H L + L+ Y V L G + A Sbjct: 358 SLEGVRGLK--GIRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEMEAAF 415 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 L V + T++ + S + +GD+V++K S + G R+I Sbjct: 416 AVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQ 462 >gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 455 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 217/454 (47%), Gaps = 39/454 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV- 85 +N I DSR I + F +KG DGHDFI A + GA VA+ +P Sbjct: 26 LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGA---------VATFSEKELPGK 75 Query: 86 --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V+D L A LA + + +IA+TGS GKT+TK+M++ LS+ KTY G+Y Sbjct: 76 PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNY 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP D + + E+G H+G+I L+ + RP IAV+T + AHL F Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSR 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRK 262 ++IA K +I +G++ G I + DS + ++ + + FG D+Q L Sbjct: 196 DKIAQGKMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFG-----DYQELNV 244 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E+ + + V G + A N ++ + +L + I+AL Sbjct: 245 TDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQL 304 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G Sbjct: 305 TANRTE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELG 361 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDG 432 S + H L + LS I + G + L + P HV + + + Sbjct: 362 PDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFED 420 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +Q L D +++K SNS G +L+N L+E Sbjct: 421 MGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta thermophila DSM 6578] Length = 470 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 29/467 (6%) Query: 9 DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D L +I G + + P G + ++IDSR F ++G DGH ++ A Q+GA Sbjct: 12 DQLASIVGARL-VAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGA 70 Query: 66 GLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSKATI-IAITGS 116 +V + + GS + + V D L AL L + I I +TGS Sbjct: 71 SAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIGVTGS 130 Query: 117 VGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKT+TKEML LS + +A G+ N+ IGVPL++ + + + I E+G+ H+GE+ Sbjct: 131 SGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDHVGEM 190 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L +V+P++AV+T I AHL F E IA KA+IF + F+ D+ FF +L Sbjct: 191 DVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEFFHVL 250 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 T +G + F+ W+ + V L K + + G G HM +N Sbjct: 251 VEGWRG----TFLPYGPATVEGFE--GWESRGLEG---VILLWKGLRIPLQGYGEHMVRN 301 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + L + L + P GRG+ G + L+D YNANP SM+A Sbjct: 302 ALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELKEIG---GVWFLVD-CYNANPESMRA 357 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 ++ + + G RRI VLG M E+G+ + S H L + L+ Y V L G + A Sbjct: 358 SLEGVRGLK--GVRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEMEAAF 415 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 L V + T++ + S + +GD+V++K S + G R+I Sbjct: 416 AVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQ 462 >gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] Length = 458 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 143/446 (32%), Positives = 211/446 (47%), Gaps = 34/446 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+I P + F A+ GP +DGH ++ KGA +V ++ + +P V Sbjct: 28 VSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVAREVEGA----PLPQLVVA 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL +L R K + AITGS GKT+ KEML L S A G+ NN Sbjct: 84 DTRLALGRLGALNREAFKGPVAAITGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNND 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G PLTL + + + ELG S +G+I + LVRP +++IT AH+ F G E+I Sbjct: 144 LGAPLTLLELSAEHRSAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--W 263 AK EI +GL TGT LN DD + + + K I SFG + ADF + Sbjct: 204 VQAKGEILDGLSATGTAVLNRDDKACPIWAER---VAGKRIVSFGLDNPLADFSAGSIAY 260 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q +++ G S+ V + +G H N L L + + L P Sbjct: 261 DQRGCPNFVLTGPLG-SLRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPV 319 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR A LID+SYNANPAS+ AAI VL+ + GR I VLGDM E+GE Sbjct: 320 KGRAVAQMLANG---VRLIDDSYNANPASICAAIDVLASFA----GRTILVLGDMGELGE 372 Query: 384 LSQSFHIDL-----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 ++ H D+ +V +LY + + H +A R H+ + L ++ Sbjct: 373 WAEQGHRDVGAYAAGKVDTLYAVGPLM---AHAVAAFGQGAR----HFPDQAS-LIESLR 424 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + G +++K S S ++++ L Sbjct: 425 AEQGSGTTILIKGSRSAAMDKVVDAL 450 >gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 455 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 217/454 (47%), Gaps = 39/454 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV- 85 +N I DSR I + F +KG DGHDFI A + GA VA+ +P Sbjct: 26 LNQIEFDSRKITEGDLFLPLKG-ERDGHDFIDLAFENGA---------VATFSEKELPGK 75 Query: 86 --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V+D L A LA + + +IA+TGS GKT+TK+M++ LS+ KTY G+Y Sbjct: 76 PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVLSTTYKTYKTQGNY 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP D + + E+G H+G+I L+ + RP IAV+T + AHL F Sbjct: 136 NNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAVLTLVGEAHLEYFGSR 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRK 262 ++IA K +I +G++ G I + DS + ++ + + FG D+Q L Sbjct: 196 DKIAQGKMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFG-----DYQELNV 244 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E+ + + V G + A N ++ + +L + I+AL Sbjct: 245 TDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQL 304 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G Sbjct: 305 TANRTE-WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELG 361 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDG 432 S + H L + LS I + G + L + P HV + + + Sbjct: 362 PDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFED 420 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +Q L D +++K SNS G +L+N L+E Sbjct: 421 MGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis glossinidius str. 'morsitans'] gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis glossinidius str. 'morsitans'] Length = 455 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 206/446 (46%), Gaps = 24/446 (5%) Query: 30 ISIDSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + DSR S A F A+KG +D HDF AV GA ++VN + L +P Sbjct: 27 VVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNRRL-----PLDVPQLV 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL +L R + A ++A+TGS GKT+ KEM L + A G++NN I Sbjct: 82 VADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGRVLATEGNFNNDI 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ DF + ELG +HLGEI + T LVRP A++ ++ AHL+ F + +A Sbjct: 142 GVPLTLLRLTPAHDFAVIELGANHLGEIAWTTDLVRPETALVNNLSAAHLAGFGSLSGVA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EIF GL G LN D + + LG K ++ F S Sbjct: 202 QAKGEIFAGLPANGCGILNADSHDWPHWQ---QVLGHKAVWRFAVQAAGGVDFFASDIES 258 Query: 268 EQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +Q + L E V G H N L + + A++ L+ G Sbjct: 259 DQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALALSVGAELPAVAAGLAQLQAVPG 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + AL G ++D+SYNAN SM AA VL+++ G R+ V+GDM E+GE + Sbjct: 319 R--LFPIALGAGRL-MLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGEEA 371 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVD 443 H + E ++L I V G + +A R H + L + +++ Sbjct: 372 AECHRQVGEAVALAGIDKVLSVGSLSHLIGEASGRGEHFQDKTALTARLAQLLSEQAVM- 430 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 V+VK S S +++ L E+ P Sbjct: 431 --TVLVKGSRSAAMEQVVRALQEKAP 454 >gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 103P14B1] gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis O35E] gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 101P30B1] Length = 494 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV G H+ A+ +SI HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 453 >gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/396 (32%), Positives = 198/396 (50%), Gaps = 50/396 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 26 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A + + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNAFIDK-----PVAAMTGSSGKTTVKEMLASILRTRGTVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI F L +PH+A+IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 G ++I AK EI EGL +GT LN +D F + + ++ G + I +F AD Sbjct: 197 GPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA---GNRNILTFALADPAADLH- 252 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-NMLMTLGIVSILTA---------DV 310 S + +G ++ +G Q N+L L + + L A + Sbjct: 253 --------ASDLSNDARGCPGFTINSPLGVAQVQLNLLGALNVTNALAAAAAACALGVTL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + L+ P +GR + A N +ID++YNANPAS+ AA+ +L+ + GR Sbjct: 305 EGIVAGLNNVQPVKGRAV-VQIASNG--TRVIDDTYNANPASINAAVDILTGFT----GR 357 Query: 371 RIAVLGDMCEMGELSQSFHIDL-----AEVLSLYNI 401 + VLGD+ E+GE ++ H D+ +V +LY + Sbjct: 358 TVLVLGDIGELGEWAEQGHRDVGAYAAGKVSALYAV 393 >gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] Length = 487 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 198/418 (47%), Gaps = 49/418 (11%) Query: 7 FHDLLQAIQGHSIGIV---PQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 +LL A+Q + V P +V+ + +DSR + P F A+ G DGH ++ Sbjct: 4 LDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYLPD 63 Query: 60 AVQKGAGLVVVNTDMVASIGS--------------------LSIP-----VFGVDDVLGA 94 V++GA +V+ +A++ ++P VDD L A Sbjct: 64 VVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPLCA 123 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L + AV R T+I ITGSVGKT+TKE++ +S +T S+N+ I +P TL Sbjct: 124 LQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITLPATLL 183 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + D + E+GM GEIRFL L RPHI ++T + P+HL IE IA+AKAE+ Sbjct: 184 GLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLERLGSIEAIANAKAELP 243 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271 E L G LN DD + ++ A + ++G + +AD +R + S + Sbjct: 244 ESLPPDGWCILNADDPRVAAMAKRTPA----HVVTYGFAPHAD--VRAVEVISHGLYGIE 297 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + V QG+ + IG H A L + ++ D + L G R R Sbjct: 298 LTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLR----DPGERLRLR 353 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 Q T+ID++YNA P S AA+ VL++ GRRIAVLG+M E+G ++ H Sbjct: 354 VVNGQQGVTIIDDTYNAAPLSTIAALEVLAETP----GRRIAVLGEMLELGSATEEGH 407 >gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] Length = 450 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L I+ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLAATDSIMLKGSNSMGLFEVVEQL 446 >gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] Length = 482 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 27/385 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASI 78 P G++IDSR + P F A G DG+DF L A++ GAG VV+ D +VA Sbjct: 22 PDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDEVVAMA 81 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V DD L +LA R R + T+I +TGS+GKTTTK++L LS + +A Sbjct: 82 RDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSKRYRVHA 141 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+PLT+ P D + E+GM+ GEI LT +P +IT + +H+ Sbjct: 142 TAGNYNNLIGLPLTILSAPADTQMLVLEMGMNDFGEISRLTACAQPTFGIITKVGTSHIG 201 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIF--------LNYDDSFFE-LLKAKSHALGIKTIYS 249 E IA AKAEI EG+ + F L+ +D F +++ + GI + + Sbjct: 202 MLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYIIERYARPAGIDVVLA 261 Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VS 304 G S + D + + ++ ++ + S H I G N L + + Sbjct: 262 -GTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGAQSVPNALFAAAVAHRLG 320 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ++D A +L E G+R + +ID+SYNA+P SM A + +L + Sbjct: 321 VPAFEIDEAFASL------EMTGRRAQVRHAACGARVIDDSYNASPESMAAGLDLLGSLP 374 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389 G RIAVLG+M EMG+ + H Sbjct: 375 CSGT--RIAVLGEMGEMGDEAPRLH 397 >gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] Length = 455 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 215/447 (48%), Gaps = 31/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG +GH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRNGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G++ G I + DS + ++ + + FG + + + ++ S Sbjct: 202 KMQIVDGMDSNG-ILIAPGDSIIDPYLPEN-----QMVIRFGDHQELNVTDIREEKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I+AL R + Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTE- 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G S + H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIHVHY------SETMDGLFLFIQS 439 L + LS I + G + L + P HV + + + + +Q Sbjct: 369 SQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYPEG-HVQFFQKNQQEDQFEDMVRQVQQ 427 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 L D +++K SNS G +L+N L+E Sbjct: 428 LLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] Length = 460 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 210/447 (46%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + IDSR + F A+KG +D HDF+ ++GAG ++VN + + P Sbjct: 30 INTVEIDSRKMVRGGLFIALKGEKFDAHDFVADVAKQGAGALLVNRRL-----EIDCPQV 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ A+ KLA R +SKA I+A+TGS GKT+ KEM L T G++NN Sbjct: 85 VVENTRLAMGKLAAWVRQQSKARIVALTGSSGKTSVKEMTAAILCQRGHTLYTAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + F + ELG +H+GEI + + P A++ + AHL F + + Sbjct: 145 IGVPLTLFRLTEEHQFAVIELGANHIGEIAYTAEMTCPESALVNNLFAAHLEGFGSLAGV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKW 263 A AK EIF GL GT +N D + + + S + ++ F S ADF Sbjct: 205 AKAKGEIFAGLSSAGTAIINLDSNDWTHWQQGMSEP---QAVWRFAVSPVPEADFYATDI 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + + ++EV G H N L + + A + L P Sbjct: 262 QEQPLATSFCLHTPIGNIEVTLPLPGKHNIANALAASALAISVGASLSDIRAGLLELKPV 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR R A + ++D++YNAN SM AA + LSQ+ G + V+GDM E+G+ Sbjct: 322 SGRLFPIRLAEGK---IVLDDTYNANIGSMIAAANTLSQMP----GYHVMVVGDMGELGD 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF-LFIQSSL 441 + H + E L+ I + G + + R H + +E + L L Q + Sbjct: 375 QTVECHRQVGEALASTKIDKIMSVGEFSSHISETSGRGQHFANKAELVAALLPLLEQHEM 434 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 + +++K S S ++N L E F Sbjct: 435 IS---ILIKGSRSAAMEEVVNTLKENF 458 >gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] Length = 454 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 146/477 (30%), Positives = 220/477 (46%), Gaps = 43/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T LLQ G I Q + +S DSR I F A+KG +D HDF V G Sbjct: 5 TLSQLLQVTHGRVINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQVVDAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V+ + ++ P VDD A+ +LA R +SKA ++ +TGS GKT+ KE Sbjct: 65 AAALLVDHQL-----DINCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGKTSVKE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L KT G+ NN IGVPLTL R+ D F + E+G +H EI + T++V+P Sbjct: 120 MTASILVQRGKTLYTAGNLNNDIGVPLTLFRLTHDHQFAVIEMGANHPHEIEYTTNIVKP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++ + AHL F E +A AK EI++GL GT +N DS+ + + K Sbjct: 180 EAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGTAIVNL-DSYSDKWQFKPRQTVW 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + YS + ++ADF + + + +++ G H N+L + Sbjct: 239 R--YSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVLAASALSI 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A ++ + L+ GR R N+ +ID++YNAN SM AAI+VL+ + Sbjct: 297 SVGATLEEISQGLASTKAVPGRLYPVRLGDNK---VVIDDTYNANDGSMIAAINVLATLP 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLS----GFHV 411 G RI V+GDM E+G + H L +VLS+ +S + G H Sbjct: 354 ----GYRILVVGDMGELGHYAHDCHQRVGIAAKQAGLDKVLSVGQLSEIISQSSECGEHF 409 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +D L R I L Q+ +V ++VK S S ++N L E F Sbjct: 410 TVKQDLLTRLIP-----------LTQQNDVVS---ILVKGSRSSAMEDVVNALKECF 452 >gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 215/447 (48%), Gaps = 41/447 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG----- 87 DSR + + F +KG DGHDFI A +GA + PV G Sbjct: 32 DSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSER-----------PVAGGAYIL 79 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN I Sbjct: 80 VDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEI 139 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+P T+ MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA Sbjct: 140 GLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIA 199 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +I +GL+K G + + D E L A + FG +AD L + ++ Sbjct: 200 QGKMQIADGLKKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERK 251 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + +++ G Y+ M+ + ++V A +A S R Sbjct: 252 DSLSFDCNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNR- 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 ++ A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S Sbjct: 309 TEWKKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGANSKS 366 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFI 437 H + L+ ++H++L G + AL D + I+ V+Y + + L + Sbjct: 367 MHGSMITSLNPEIVTHLFLYGQDMEALYD-YAKEIYPPGKVYYFIKNDEKDQFEQLTKAV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +L D +++K SNS +L+ L Sbjct: 426 RENLTPADQILLKGSNSMNLAKLVEDL 452 >gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895] Length = 452 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/443 (30%), Positives = 219/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF +A + GAG ++V+ + +P Sbjct: 24 IDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVSRPL-----DCDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL G +N D++ + + +G + ++ F + N+DF Sbjct: 199 AKAKGEIYTGLPVNGIAIMNADNNDWLNWQG---IIGDRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q ++V+ G H N L + + A +D AIK + + K Sbjct: 256 TSHGTEFTLQTPTGDIDVLLPLPGRHNIANALAAAALSMAVGATLD-AIKT-GLANLKAV 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G+ + LN L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G S Sbjct: 314 PGRLFPIQLNDNQL-LLDDSYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V +G A+ +A + H+++ L + + + + Sbjct: 369 EACHVQVGEAAKAAGIDSVLSTGKLSQAIGNA--SGVGEHFADK-SALVARLNTLIAEHQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 + ++VK S S ++ L E Sbjct: 426 IITILVKGSRSAAMEEVVRALQE 448 >gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 451 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 191/385 (49%), Gaps = 27/385 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L Q + IG G + +S D+R++ F A++G +D HDF AV GA + Sbjct: 8 ELAQVLDARLIG--EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAVAAGASAL 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V ++ L+IP V D L L +L R R ++AITGS GKTT KEM T Sbjct: 66 LVEREL-----PLAIPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTTVKEMATA 120 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L A G++NN +GVPLTL R+ F + ELG +H GEI + T L +P A+ Sbjct: 121 ILRQEGDVLATAGNFNNEVGVPLTLLRLEPQHRFAVMELGANHPGEIAWTTSLAKPDAAI 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I +A AHL F +E + AK+EIFEGL + GT +N D+ F+ K A GI + Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLGEGGTAIVNADNEFW----PKWQARGIHCAF 236 Query: 249 SFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S + + F R + C+E ++ V QG+ + + G H N L Sbjct: 237 SI-EDQRQPFHARNVVINQQGCAE--FVMVTPQGE-ISLTLAIPGRHNVANALAAAAGTL 292 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L A + + L + P +GR C G TL+D++YNA+ S+ A I L+ +S Sbjct: 293 ALGASLASVKAGLELMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMS 348 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389 G ++ V GDM E+GE S H Sbjct: 349 ----GYKVLVFGDMKELGEESAEQH 369 >gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 153/487 (31%), Positives = 220/487 (45%), Gaps = 33/487 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+QG + G S DSR I F AI G DGHD++ Sbjct: 1 MMPM-SLEEIAQAVQGRLVAGTAAANTPVATSAFTDSRQIVEGSVFIAIAGERVDGHDYV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIA 112 H +GA +V+ + I +P V+D + AL LA R +A T++ Sbjct: 60 PHVGAQGAVAAIVDHE----IADADVPQIVVEDTVLALGLLAKHNIERRRALGTPFTVVG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+++ LS + T A +GS+NN IG+PLT ++ + F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIHGLVPGGLSVLNANDEHV 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIG 289 + A + + G N + + C E L+ G+ EV G Sbjct: 236 AAMSAFAPGDVMWFGLPNGDGGNPAITAQHVR-CDELDHPSFTLKNGDGEHAEVTLGICG 294 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 H N L + L +D ALS V R + FTLID+S+NA Sbjct: 295 QHNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTVNKQETSFTLIDDSFNA 354 Query: 349 NPASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + L + E + RIAVLG M E+G + H+ + + + Sbjct: 355 NPDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHVGIGRYALEGGVDALLT 414 Query: 407 SGFHVLALKDALPRSI-----------HVHYSETMDGLFLFIQSSLVD--GDVVVVKSSN 453 G A DAL ++ HV + +D + V+ G VV++K S+ Sbjct: 415 VGSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTRLAVEHPGAVVLLKGSH 474 Query: 454 SCGFYRL 460 + G L Sbjct: 475 ASGLSAL 481 >gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] Length = 453 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 23/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L K + +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKNVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVFH 321 S+ V G+ V GI M Q+ + + L+ ++ ++ + + H Sbjct: 256 NALGIASFTLVTPVGEV--AVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLAH 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E+ Sbjct: 311 LSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H + E + + V G + D + + M + I+ Sbjct: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQ 425 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 426 GRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 452 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGTESEACHLQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 468 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 144/468 (30%), Positives = 219/468 (46%), Gaps = 12/468 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A G +G P V+G+S D+R++A + F A+KG +D HD + A Sbjct: 7 TPHFTSDELAAATGGRWLG-APPAAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + P V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSGAWAAAHPAPPRPALAVADTLAALGAIARFHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL +E +A AKAE++EGL G +N DD+ +LK + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242 Query: 242 LGIKTI-YSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + ++ G+ + D L Q E + + + + V G+ Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +I D I + L+ P G+R R L+D+ YNANPASM AA+ Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALE 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416 VL ++ R +AVLGDM E+G H L + ++ + G A Sbjct: 360 VLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFGPRARATAEAA 419 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++E +D L F++ L DV++VK S RL+ L Sbjct: 420 RAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467 >gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 454 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 21/447 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R+I F A+ G +D H+F A + GAG ++V + ++ P Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRL-----DVNAPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA + +AITGS GKTT KEM+ L G++NN Sbjct: 79 VVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F IE + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQLVKPVIALVNNVAAAHLEGFGSIEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 AK EI++GL+ G +N D + L ++ L K + +F + ADF Sbjct: 199 KQAKGEIYQGLQAGGIAIVNLDSNGDALWQS---VLADKKVITFSHNNSQADFYASNVTM 255 Query: 266 CSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E + + + +E+ IG H N + I + A V+ L + Sbjct: 256 NEEGKASFTLHISSDSREIELSLGIIGQHNVANAIAASIIALHMGATVEEIQFGLLNLNK 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + LID+SYNA+ +MKAA+ +L G+R +LG+M E+G Sbjct: 316 VKGRVDVEQLS---STIKLIDDSYNASVPAMKAAVDLLGAF----HGQRWLILGNMAELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSL 441 E S + H + E + HV G + + L IH + E +D + + ++ Sbjct: 369 EESLALHRQVGEHAAPQKFEHVLTYGADAKIISE-LCHGIHFETHQEMIDYIKQHLDQTV 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 D ++VK +N + + L E F Sbjct: 428 SDQHTILVKGANGARMFEVAAALKEYF 454 >gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] Length = 450 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFELSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L ++ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIEAVKQTLESTDSIMLKGSNSMGLFEVVEQL 446 >gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK353] Length = 456 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 214/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + +D + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SDRPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 AAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + A+ ++ S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVAEA-AITQSFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 ASNGA--DILSDVYNANPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 35/447 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ + P Sbjct: 29 IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSEREVEGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA + + +IA+TGS GKTTTK+M+ LS+ KTY G+YNN Sbjct: 79 LVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +PHI V+T I AHL F E+I Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + DS + +S + + FG A+ ++ ++ Sbjct: 199 AKGKLQIVDGMDSDG-ILIAPVDSIVDPYLPES-----QMVIRFGDG--AEIFVKDLQES 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + + G + A N ++ + +L D ++AL R Sbjct: 251 KDSLTFTTNVIDRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S+I + G++IAVL DM E+GE S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437 H + LS + + G + L + V+Y + D + + Sbjct: 366 ELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFPLGKVYYFKKTADEDQFDDMLKTV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 Q+ L D +++K SNS +++ L Sbjct: 426 QTVLQPADQILLKGSNSMHLAKVVEAL 452 >gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] Length = 452 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 219/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q+ S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQIPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] Length = 453 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 217/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + + + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL + ++ D + E KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLREGAVAIVSLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ V L G+ ++V IG H N L + + A + L+ H Sbjct: 256 NALGVASFTLVTLIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIRHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L + LID+SYNA+ +MKAA+ +L S R +LG+M E+G+ Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + V G + D H+ T + FI+ + Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423 Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 452 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] Length = 453 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 216/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR+I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 ISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRELEADCSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + + + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL + +N D + E KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ V G+ ++V IG H N L + + A + L+ H Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALSAAALSLEMGASLAEIRHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L + LID+SYNA+ +MKAA+ +L S R +LG+M E+G+ Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + V G + D H+ T + FI+ + Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423 Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] Length = 451 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 194/385 (50%), Gaps = 27/385 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L Q + IG G + +S D+R++ F A++G +D HDF AVQ GA + Sbjct: 8 ELAQVLDARLIG--DDGEITVVSTDTRTLGAGALFVALRGERFDAHDFCEQAVQAGASAL 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V ++ L+IP V D L L +L R R ++AITGS GKTT KEM T Sbjct: 66 LVEREL-----PLAIPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTTVKEMATA 120 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L + + A G++NN +GVPLTL R+ F + ELG +H GEI + T L +P A+ Sbjct: 121 ILRNEGEVLATAGNFNNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSLAKPDAAI 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I +A AHL F +E + AK+EIFEGL + GT +N D+ F+ + + GI+ + Sbjct: 181 INNVAAAHLEGFGSLEGVFHAKSEIFEGLSEGGTAIVNADNEFWPKWRER----GIQCAF 236 Query: 249 SFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S + ++ F R + C+E ++ V QG+ + + G H N L Sbjct: 237 SI-EGQSQPFHARNLVLNERGCAE--FVMVTPQGE-LSLTLAIPGRHNVANALAAAAGCL 292 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L A + + L P +GR C G TL+D++YNA+ S+ A I L+ + Sbjct: 293 ALGASLGSVKAGLEQMAPVKGR----FCVQRWGGLTLVDDTYNASVESVLAGIDALTAMG 348 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH 389 G ++ V GDM E+GE S H Sbjct: 349 ----GFKVLVFGDMRELGEESAEQH 369 >gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70] Length = 460 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 127/396 (32%), Positives = 191/396 (48%), Gaps = 38/396 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85 V IS D+R FFA+KG H+D H+++ AV +GA LVV D +S+P Sbjct: 25 VENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVAQGANALVVERADT-----QISVPQ 79 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGS 142 V D AL +LA + + +A+TGS GKTT KEM L S +++ G+ Sbjct: 80 LIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKTTVKEMTASILQSAVGVEQVLFTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H GEI + T LV+P++A++ +A AHL F Sbjct: 140 FNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAYTTGLVQPNVALVNNVAAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261 +E +A+AK EI+ GL+ G +N + + + +G + F N ADF Sbjct: 200 LEGVATAKGEIYRGLQPDGVAIINKEHDYRSTW---AQDIGAHRVQYFAYQDNTADFYAD 256 Query: 262 K---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + C+ Q + L +G H +N L + + A + Sbjct: 257 NVIFHEAGSTFDLCTPQGKTTIHLP---------YLGEHNVKNALAASALAMNVGATLAQ 307 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L V +GR + N L+D++YNAN S+++AI VL + + RI Sbjct: 308 IKQGLEVRTQVKGRLYPVQPCDN---LLLLDDTYNANVDSLQSAIRVLQKY----DAFRI 360 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 V+GDM E+GE SQ H +AE + V+ G Sbjct: 361 LVVGDMAELGENSQICHQQVAECAKAAKLERVYSFG 396 >gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] Length = 476 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 207/444 (46%), Gaps = 29/444 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89 DSR P + A G DGH F+ A KGA VA++ S + P VD Sbjct: 36 DSREAEPGSLYVARIGESMDGHQFVGAARDKGA---------VAALTSRPVDELPCVVVD 86 Query: 90 DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DV A ++ A R + T+I ITGS GKT+TK++L L + T A +GSYN+ +G Sbjct: 87 DVQAAFVAISRAVLERATDLTVIGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVG 146 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ R+ D F + E+G +G I +LT + P I V+ + AH+ F E IA Sbjct: 147 VPLTVTRVTADTRFLVVEMGARGIGHINYLTRIAPPQIGVVLNVGTAHVGEFGSREAIAR 206 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AKAE+ E L G LN DD + ++ A + G++ A + S+ Sbjct: 207 AKAELVEALPSDGVAVLNADDPVVRAMADRTSA----RVVLVGEAAEAAVRAEDVTVGSD 262 Query: 269 -QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ V + +G H N L L + +DTA +++ + G Sbjct: 263 GRATFRVTTPAGGATIALRLVGRHHVGNALAVLAVALECGIPLDTATTSIA----EAGIV 318 Query: 328 KRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGEL 384 R+R + + T+++++YNANP SM+AA+S L + GEGRR AVLG M E+G+ Sbjct: 319 SRWRMEVTERPDGVTVVNDAYNANPDSMRAALSALESM---GEGRRTWAVLGSMLELGDE 375 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443 S + H ++ + + + G + D P + + D +++ + Sbjct: 376 SDTDHAEVGAEAQQRGVDELLVVGETARPMADIRPVDGTRIRWVADADAAEALLRAEVAP 435 Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467 DVV+ KSS G L + L E Sbjct: 436 PDVVLFKSSRDAGLRWLGDRLTAE 459 >gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] Length = 428 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 189/385 (49%), Gaps = 23/385 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I +FA+ G ++G+DF + A+ GA VV+ A ++ V Sbjct: 16 VSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVD---AAKYKDHPGCIY-VA 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL L R KA +I++TGS GKTTTKE++ LS T A +G+ NNHIGV Sbjct: 72 DVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL+L + +F + E+G +H EI FL L +P IT AHL F G++ + Sbjct: 132 PLSLLNIKESTEFAVIEMGANHQKEIEFLCALAQPDFGCITNFGKAHLEGFGGVQGVIKG 191 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L TI N +D L+ H++ SFGK + + + K Sbjct: 192 KSELYQYLIANNKTILYNNEDPIQAGALRQYDHSI------SFGKDQESTYTTSILK--- 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + +++Q Q ++ +G + A N ++ I + A+ + P R Sbjct: 243 SNTSVKIQFQDTTINTSLYGA--YNATNCMIAASIGRHFDVPIQDIKNAIESYKPNNNRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + G L+ ++YNANP+SM+ AI S+++ +I VLGDM E+GE + Sbjct: 301 ELRQI----GPHMLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVVLGDMFELGETAAK 356 Query: 388 FHIDLAEVLSLYNISHVWLSG--FH 410 H + L L I+ + L G FH Sbjct: 357 EHQAIVAQLKLSKINRIILIGALFH 381 >gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] Length = 463 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 208/446 (46%), Gaps = 27/446 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++IDSR + F AIKG DGH FI + +GA + D+ G ++ P V Sbjct: 31 VAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMDQGAICSLSEQDL----GDVTYPYIQVA 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 AL LA R ++ I+GSVGKT+TKEM+ LS G++NN IG+ Sbjct: 87 SCTEALKDLAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSEKYCVLKTEGNFNNEIGL 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ + + + + E+G+SH G++ L + RP + VIT I AHL N + I Sbjct: 147 PLTVFNLRKEHEVAVLEMGISHFGDMEPLAKIARPDVCVITNIGYAHLENLGTRDGILKE 206 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F+ + GT+ LN DD + L+ + GI+ +Y FG F + ++ + Sbjct: 207 KTSMFDFMNPDGTVILNGDD---DKLRGYTSERGIQPVY-FGLDPACPFHAEQIQKMGLK 262 Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + S H I G HM N L + + L + I+ + P GR Sbjct: 263 GTVATFVTPSSSFSAHVSIPGDHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNN 322 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +T+ID+ YNANPASMK+++ VL+ + R +A+LGDM E+G + Sbjct: 323 ----LIEAEHYTIIDDCYNANPASMKSSLDVLA----FADTRTVAILGDMGELGADEKKM 374 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----------VHYSETMDGLFLFIQ 438 H ++ IS + G + +A + V++ +T + + + Sbjct: 375 HAEVGSYAVKKGISLLICIGTLSAEMANAARTASEASSDSDTKTLVYHFDTKEAFYRQMD 434 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 L + D V+VK+S+ F ++ L Sbjct: 435 QLLKEQDTVLVKASHFMEFPEIVKRL 460 >gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 452 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ AIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLAAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 190/386 (49%), Gaps = 30/386 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 26 DGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVEGA----ALPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ R + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+ +IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260 G + I AK EI EG+E +GT LN +D F + + ++ I T + + +L Sbjct: 197 GPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASEL 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + M+ L S +V + +G H N L L ++ + L+ Sbjct: 257 SRDARGCPSFTMDSPL--GSAQVQLNLLGTHNVTNALAAAAAAGALGVSLEGIVAGLNNV 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + +ID++YNANP S+ AA+ +L+ + GR + VLGD+ E Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367 Query: 381 MGELSQSFHIDL-----AEVLSLYNI 401 +GE ++ H D+ +V +LY + Sbjct: 368 LGEWAEQGHHDVGAYAAGKVSALYAV 393 >gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 454 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 211/448 (47%), Gaps = 25/448 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q ++G+SIDSR+I F KG + DGH F+ A++ GAG D + Sbjct: 23 QHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGAGAAFYQNDAKPD-HEIEG 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ VDD L AL +LA A +IA+TGS GKTTTK+M+ L K G+Y Sbjct: 82 PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDMIESVLKPAFKVKKTQGNY 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ ++ D + I E+GMS EI L+ + P IAVIT I +H+ + Sbjct: 142 NNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPDIAVITNIGESHMQDLGSR 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EI GL+ G + D+ LLK L S G +++ Sbjct: 202 EGIARAKFEIVSGLKPGGVFIYDGDEP---LLKPHVDTLKDTEAISIGLAQDNSV----- 253 Query: 264 KQCS--EQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 CS + M + + E H+ I G H +N + + I IL + + +S Sbjct: 254 -VCSVEQHDAMGIAFTLNTNE--HYQIPILGTHNMRNAAIAISIGKILGLSYEEIQENIS 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + +R N ++I+++YNA+P SMKAAI L+ + +GR+I +L D+ Sbjct: 311 KVKLTGMRMELHRTDSN---ISVINDAYNASPTSMKAAIDTLAAM----DGRKILILADV 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFI 437 E+GE S H + + L I+ + G + + + ++ H+ + L FI Sbjct: 364 LELGENSAEMHASVGDYLQDKGINLLLTFGDEAVHIYENGKANVDEAHHFNHKNELIEFI 423 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D +++K S + + L+ Sbjct: 424 TQHAQAEDEILIKGSRGMKLEEVSDALI 451 >gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] Length = 453 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 200/389 (51%), Gaps = 25/389 (6%) Query: 10 LLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GL 67 LL++I +G + +GF +G+S D+R F +KG +DGH FI A++ GA G Sbjct: 7 LLKSIAKGSRLKEDRRGF-SGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + V + ++ V+D L AL LA A R + +I ITGS GKTTTK+++ Sbjct: 66 LWKEQEPVPEQLPETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVA 125 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L+ + G+ NNHIGVPLTL MP D + + E+GM+H GEI LT + +P+ A Sbjct: 126 SVLAGTAAVHKTKGNLNNHIGVPLTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKPNAA 185 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT+I AH+ + E IA+AK EI +GL K + + D+ ++ Sbjct: 186 IITSIGDAHIEHLGSREGIAAAKMEIADGLIKESWLLFDGDEPLLSPYNEQAET------ 239 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL- 306 + G S A ++ K E ++ L G ++ +G H +N + + L Sbjct: 240 -TVGFSDQAATKISDVKTL-ENGYV-FYLNGARWQLTM--LGKHNVKNAAYAILLAQKLG 294 Query: 307 --TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + + +L++ G R T+I+++YNANP SMKAAI + ++ Sbjct: 295 FSNAMIQKQLSSLAI------TGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKEL- 347 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 PH + RR+ VLGD+ E+G+ ++ H +A Sbjct: 348 PHYK-RRVLVLGDIYELGQDEEALHKSVA 375 >gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] Length = 472 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 74/474 (15%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+ DSR+I P F I G +DGH+F + GAG D +P+ Sbjct: 26 IIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASGAGAAFWQRDHQPVP---DLPL 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL LA A + A ++ ITGS GKTT K+M++ L + K + G+YNN Sbjct: 83 ILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKDMVSALLETTYKVHKTQGNYNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ M D D + E+GMS EI L+ + RP + VIT I AH+ EE Sbjct: 143 HIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSREE 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFGKSKNAD----- 257 IA AK EI G++ G + + D+ + + A+ + G+ T ++FG + D Sbjct: 203 IARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKPEGLNT-FTFGNQETNDDYPTG 261 Query: 258 --FQLRKWKQCSEQSWME---VQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIV 303 F R S + E + L G+ H GIG ++ L + Sbjct: 262 LMFHARGIIFTSNRHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFANLKLS 321 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 S+ V+T T+++++YN++P ++KAA+ VL + Sbjct: 322 SMRIEAVETPFG-----------------------VTVLNDAYNSSPTAVKAAVDVLGDM 358 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G +RIAVLGDM E+G+ FH ++ + LS N V+ G P S+H Sbjct: 359 K--GYRKRIAVLGDMLELGQREGEFHAEIGDYLSPDNADLVFTYG----------PLSVH 406 Query: 424 VHYSETM---DGLFL-------FIQSSL---VDGDVVVVKSSNSCGFYRLINLL 464 + DG L I S L + D+V+VK+S +++ L Sbjct: 407 TAERAKLRFPDGAVLSFTDKEKLIASVLEHVSEKDIVLVKASRGMRLEHVVDAL 460 >gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] Length = 493 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 198/401 (49%), Gaps = 30/401 (7%) Query: 9 DLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ QA+ G + GI G DSR + F AI G DGHDF+ +G Sbjct: 8 EIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQG 67 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGK 119 A +V+ + VA G +P VDD + AL +LA R +A T+I ITGSVGK Sbjct: 68 AVAALVDHE-VADAG---VPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGK 123 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H+GEI LT Sbjct: 124 TTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHVGEIANLT 183 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV P IAV+ + AHL F E IA AK+EI +GL G LN +D + Sbjct: 184 SLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHVAAMSGI- 242 Query: 240 HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV--VHHGI-GYHMAQN 295 A G + + + D + +C E +L+ E V+ GI G H N Sbjct: 243 -APGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMN 301 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANP 350 L + L +D L+ R +R A++ + FTLID+S+NANP Sbjct: 302 ALAAATVAHRLGMPLDRIAAGLADVK----RISPHRMAVSAIVKPEARFTLIDDSFNANP 357 Query: 351 ASMKAAISVLSQISPHGEGR--RIAVLGDMCEMGELSQSFH 389 SMKA + L + + E + RIAVLG M E+G ++ H Sbjct: 358 DSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALH 398 >gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix algicola 5H-3-7-4] gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix algicola 5H-3-7-4] Length = 400 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 127/430 (29%), Positives = 213/430 (49%), Gaps = 39/430 (9%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 FFA+KG +++G+ F A++KGA V+++ ++ + S +I V ++VL L +LA Sbjct: 2 FFALKGDNFNGNTFSTEALKKGAKYVIID-ELEYNTSSQTILV---ENVLETLQQLATYH 57 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R II +TGS GKTTTKE++ LS T A G+ NNHIGVPLTL M D + Sbjct: 58 REYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTKDTEI 117 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221 GI E+G +HL EI FL+++ +P IT AHL F I+ + + K+E++ L Sbjct: 118 GIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQGVINGKSELYNYLITYKK 177 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWME----V 274 IF N DD+ + K +K+ +S Q Q +++E V Sbjct: 178 HIFFNADDT---IQNEKLSNYNLKSGFS--------------NQTQNQLNINFLEANPFV 220 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 L+ + + IG + N+ + I S A+ + P R + + Sbjct: 221 TLKFQDQIITSQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNNRSQ----II 276 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 N+ +I ++YNANP SMKAA+ S ++ +IA LGDM E+G+ +Q+ H ++ + Sbjct: 277 NKNSNKIILDAYNANPTSMKAALENFSNLNA---TYKIAFLGDMFELGDEAQAEHQNITD 333 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 +++ NI+ V+L G + + K + + +T + L + + +++K S Sbjct: 334 LITTLNINTVYLIGTNFNSTK---TENKKIKQYKTFEALKKSFNTIDITNATLLIKGSRG 390 Query: 455 CGFYRLINLL 464 R+++L Sbjct: 391 MALERIVDLF 400 >gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 211/457 (46%), Gaps = 18/457 (3%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+L A + +G + + IDSR++ P F I G +DGH+F AV KG Sbjct: 4 TLSDILTATKAVGDVGERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + + PV V D + AL LA A R + A ++ +TGS GKTT KE Sbjct: 64 AAAVLADRPLTGL--PDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVKE 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + T ++NNHIG+PL++ + + ELG+S GE+ L + P Sbjct: 122 LTAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDAYWVMELGISRPGEMEPLAAIAEP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LNYDDSFFELLKAKSHAL 242 +AVI + PAHL + +A+ K ++F L G ++Y + + L Sbjct: 182 DVAVIHNVGPAHLEALGDVAGVAAEKTKLFNFLRPGGVALASMDYPELWEAALAVFPRVR 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ T GK ++A ++ + E + ++L MEV G H A+N+L Sbjct: 242 GLST-KGQGKGRSAPYRAKYLGALPEGRGRFFLKLGELEMEVETPLTGGHFAENILAAAT 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 IL A L E +R+ C QG +T+ID++YNANP SM+ AI+ Sbjct: 301 SAHILGAGEKQIAAGLETAVMPE---QRFYC-RRQGCYTIIDDTYNANPLSMRRAIAAAV 356 Query: 362 QISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + +G+ + VLG+M EMG ++ H L E + V+ G H A+ + L R Sbjct: 357 ETA---QGKPLVLVLGEMREMGAHAEEEHAKLGEAAAASGARAVFYRGAHAEAVGEGLTR 413 Query: 421 SIHVHYSETMDGLFLF---IQSSLVDGDVVVVKSSNS 454 + +D F + + + G V + K S S Sbjct: 414 GGYAGRFAVVDTPAAFCDMLAAMDLRGGVFLFKGSRS 450 >gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK150] Length = 456 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 214/443 (48%), Gaps = 33/443 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I P F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYR 331 E + +++ G Y+ M + + L V A A + K R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAM---IAAYAALQEGVSEAAIAQAFSELKLTRNRTEWK 312 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H Sbjct: 313 KAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGS 370 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441 + L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 371 MITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKL 429 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 430 TPTDQILLKGSNSMNLAKLVEDL 452 >gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 423 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 189/384 (49%), Gaps = 25/384 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ D+R FF ++G ++G++F+ A++KGA VV N + + + V Sbjct: 13 GVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQAIL----V 68 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L L +LA+ R IIA+TGS GKTTTKE++ L+ +T G++NNH+G Sbjct: 69 EDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNFNNHLG 128 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + D I E+G +H GEI L + P IT AHL F E + Sbjct: 129 VPLTLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYITNFGRAHLEGFGSFEGVIQ 188 Query: 209 AKAEIFEGLEKTGT-IFLNYDDSF-FELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 AK+E++ L+K IF D+ LL G YSF +K A+ QL +K Sbjct: 189 AKSELYNYLKKDNKRIFFCQDNEIQVRLLN------GYSNTYSFSMEGNKKANLQLSLYK 242 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + V+L + + H IG + A N+ + I + + I + + P Sbjct: 243 ES-----LLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKEAIIHGIEGYIPTN 297 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + A G L+D +YNANP+SM AAI +I +I +LGDM E+G+ Sbjct: 298 NRSQFVEKA--HGNKILMD-AYNANPSSMHAAIEAFKEIPS---ANKILILGDMKELGDY 351 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 S + H L ++LY V L G Sbjct: 352 SPAEHQQLVNDIALYPWEAVLLVG 375 >gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 222/473 (46%), Gaps = 33/473 (6%) Query: 11 LQAIQGHSIG-IVPQGFVNGI---SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +QAI G I+ +G V+ I S D+R+I F + G +DGH FI A++ GA Sbjct: 6 IQAIARACNGTIIKKGSVDTIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQ 65 Query: 67 LVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V V NT + + + + V D L AL ++V R I +TGSVGKT+T Sbjct: 66 AVFVQEGHNTKTIQAFND--VWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTST 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++++ LS + +G++NN IG+PLTL + + + E+GMS GEIR L +V Sbjct: 124 KDLISGVLSGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT I +H+ + E I AK EI ++ + +N DD + + Sbjct: 184 HPEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDDEYLRCIHKDDKDY 243 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T+ +G S DF + E+ S V++ G+++ +G H N L + Sbjct: 244 ---TVIFYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVW 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + L F P + R + + +G +I+++YNA+P SMKAA+ VL Sbjct: 301 IGLKYHMTFEEIQRGLDGFQPSKMRLE----VITKGRMKIINDAYNASPDSMKAALDVLD 356 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416 + + R+IAVLG+M EMG S+ H + + NI + G + A K Sbjct: 357 HMKSN---RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGEMANWIGLEAKKY 413 Query: 417 ALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + H E ++ L F+Q D ++VK S ++N L E Sbjct: 414 GIEENSIRHVFNNKEAIEMLGQFVQEE----DAILVKGSRGMAMEEIVNFLQE 462 >gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] Length = 457 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/473 (29%), Positives = 227/473 (47%), Gaps = 31/473 (6%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVQRKL-----DLNITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I+ + AK EIF+GL T +N + + + K L Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWK---DVLA 236 Query: 244 IKTIYSFGKSKN-ADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 K + +F +S + AD+ +R +Q ++ ++Q +++V IG H N L Sbjct: 237 DKNVLTFSESDDTADYFATNIRINEQG--EACFDMQTPQGAIDVELGIIGQHNVANALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + A + L+ +GR + + + N LID+SYNA+ +MKAA + Sbjct: 295 AALSIQFGATLAEIKSGLANLISVKGRVEVQQLSQN---IKLIDDSYNASVPAMKAAAKL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS +G+R +LG+M E+G+ S + H + E + + HV G + + Sbjct: 352 LSSF----KGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEVCN 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 + H++ T + + I+ L + ++VK +NS G ++ L E F Sbjct: 408 GT---HFA-THEAMIAHIEQHLSLPENAPHTLLVKGANSAGMSKIAAALKENF 456 >gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 495 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 223/463 (48%), Gaps = 46/463 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 IDSR + P + F A G H DGHDF+ A GA L +V TD A+ S+P VDDV Sbjct: 33 IDSREVGPGDLFAAFLGEHVDGHDFLDAARTAGAALSLV-TDAAAA-AEHSLPAVRVDDV 90 Query: 92 LGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 AL LA A + ++A+TGS GKT TK++L L S T A +GS+NN Sbjct: 91 RDALAALARAQLARARQENPQLVVLAVTGSAGKTGTKDLLGTILRSAGPTVAPVGSFNNE 150 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLT+ ++ + F + E+G +G I LT + RP ++++ + AHL F ++ I Sbjct: 151 LGLPLTVLQVTGETRFLVLEMGARGIGHIAELTEIARPDVSLVLNVGSAHLGEFGSVDAI 210 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ + L G LN +D + +S A + ++ G + A+ L Sbjct: 211 ARAKGELVDALAPGGRAILNAEDRLVAAMAERSAAPVVTWGFTTGDVRGAELTL------ 264 Query: 267 SEQSWMEVQLQGKSMEVVHHG--------------IGYHMAQNMLMTLGIVSILTADVDT 312 EQ+ + L+ + HG +G H Q + + + L A VD+ Sbjct: 265 DEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGEH--QAANVLAALTAALMAGVDS 322 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371 A ++ G+R + L G +ID++YNANP S++ A+ L+ + GRR Sbjct: 323 ASATAALDGATLASGQRMQV-LRAGGALIIDDAYNANPDSLRQALKTLAHL-----GRRH 376 Query: 372 --IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIH 423 IAVLG+M E+G + H ++ + NI +++ G H +L+ + Sbjct: 377 RTIAVLGEMLELGPDTVRLHDEIGRLAVRLNIGQLYVVGEGAAPIHHGASLEGSF--GGE 434 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Y +T++ ++ + GD V++KSS G R+ L+E Sbjct: 435 SEYLDTVEEAIAVLERIVQPGDAVLLKSSRDAGLRRIAAPLVE 477 >gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster bacterium] Length = 419 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 179/364 (49%), Gaps = 35/364 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +NG+ D+R F A+ G ++D HD+I HA + GA ++ + + ++PV Sbjct: 24 IINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAVAIIASKQV-----KTNLPV 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD AL+ +A K T++AITGS GKTTTK ML L+ T G+ NN Sbjct: 79 IKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNMLANILNLKAPTLKTQGNLNN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVP+TL + F + E+G +HLGEI+ L + PHIAV+T AH+ F G Sbjct: 139 HLGVPMTLLMLEPKHQFAVIEMGANHLGEIKHLRDITHPHIAVVTNTLDAHIGEFGGFNN 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK EI+ + +N + +F + SFGK + + Sbjct: 199 LVKAKGEIYHTNSQN---IVNTNTTFTGDI-------------SFGKDGDV------FAS 236 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ ++ + + V +G H +N L L D++T K L ++G Sbjct: 237 NINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYALDIDINTIKKGLEKTQAEKG 296 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +++ T+ID++YNA+P SM+AAI L +G +IAVLG M E+G S Sbjct: 297 R----LTIIHRQGLTIIDDTYNASPQSMRAAIDALLSF----DGEKIAVLGSMAELGNDS 348 Query: 386 QSFH 389 ++FH Sbjct: 349 KTFH 352 >gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] Length = 453 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320 S+ V G EV V GI M Q+ + + L+ ++ ++ + + Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S + H + E + + V G + D + + M + I+ Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] Length = 455 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD+I +AV GA + D Sbjct: 13 GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 12P80B1] Length = 494 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 206/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV+ G H+ A+ + I HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVFTLGNHMAHTAAAINEQKPIARHYTD 453 >gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/372 (31%), Positives = 185/372 (49%), Gaps = 25/372 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 26 DGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVEGA----ALPQLV 81 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ R + A+TGS GKTT KEML L + A G Sbjct: 82 VLDTRKALAQLGAMNRNGFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+ +IT AH+ F Sbjct: 137 NLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QL 260 G + I AK EI EG+E +GT LN +D F + + ++ I T + + +L Sbjct: 197 GPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASEL 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + M+ L +++V + +G H N L L ++ + L+ Sbjct: 257 SRDARGCPSFTMDSPL--GNVQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNV 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + +ID++YNANP S+ AA+ +L+ + GR + VLGD+ E Sbjct: 315 QPVKGRAV---AQIASNGVRVIDDTYNANPGSINAAVDILTGFT----GRTVLVLGDIGE 367 Query: 381 MGELSQSFHIDL 392 +GE ++ H D+ Sbjct: 368 LGEWAEQGHHDV 379 >gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 456 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 209/444 (47%), Gaps = 35/444 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89 DSR I + F +K DGHDFI A + GA VA++ + P VD Sbjct: 32 DSRLIGKGDLFVPLKVAR-DGHDFIETAFENGA---------VATLSEKEVEGHPYLLVD 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVLGA KLA +S+ ++A+TGS GKTTTK+ML LS+ KTY G+YNN IG+ Sbjct: 82 DVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP + + E+G HLG+I L+ + P A++T I AHL F EIA Sbjct: 142 PYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHPKAAIVTLIGEAHLEFFKDRTEIAKG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + + D + L + + + FG+ AD ++ K + + Sbjct: 202 KLQIADGMPAGGLLLVPADPIVEDFLPNQ------QELVRFGEG--ADIRITKLDERKDS 253 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E +++++ G Y+ M+ + V++ + AI+A F E R Sbjct: 254 LTFEANFLEEAIDLPVTG-KYNATNAMIASY--VALKEGVSEEAIRA--SFKGLELTKNR 308 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ + YNANP +M+ + S I + GR++AVL DM E+GE S H Sbjct: 309 TEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQSIDLH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFIQSS 440 + LS + V G + L + HV+Y + + L ++ S Sbjct: 369 NQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDLVKQVKES 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L + D +++K SNS +L+ L Sbjct: 429 LKEQDQILIKGSNSMNLAKLVEEL 452 >gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] Length = 465 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 212/464 (45%), Gaps = 65/464 (14%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L +A QG + G +PQG + I DSR + F A+KG +D HDF+ + Sbjct: 14 WTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTT 121 G + +V + I L V D AL L A R + A +IA+TGS GKTT Sbjct: 74 GCQIAIVEHPIDVDIAQLV-----VKDTRLALGDLG-AYRRKQNAHLKVIALTGSSGKTT 127 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + ++L Sbjct: 128 TKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNL 187 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+PH+A I I AHL F G E I AK+EI+ + G + D F ++ + A Sbjct: 188 VQPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGVAIVPAADDFTADIRNSAQA 247 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGY 290 + SFG Q + E++L+ +S+ H G Sbjct: 248 ---HSNLSFG-------------QGGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGE 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNAN 349 H QN + ++D ++ L ++ +G + R Q L ID++YNAN Sbjct: 292 HNVQNATAATAFALAIGIELDDIVEGL-----EQAQGAKGRLNFIQHQNHLFIDDTYNAN 346 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 P SM+AA VL Q +G ++ V+GD+ E+G+ S H DL L+ + + + G Sbjct: 347 PTSMRAAAQVLLQ----QQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGE 402 Query: 409 --------------FHVLALK-DALP---RSIHVHYSETMDGLF 434 H A + +ALP + I H ++M LF Sbjct: 403 YANAALQGSSHSEKLHAFATQAEALPFLIQLIQTHQPQSMSFLF 446 >gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 435 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 221/471 (46%), Gaps = 47/471 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ + ++G IG G VN I DSR++ F ++G + DGH FI A Q GA Sbjct: 4 EEVAKIVKGKLIG---NGKVNSIEFDSRNVKKGSLFVPLRG-NRDGHQFIKDAFQNGASG 59 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + G I V + A L R T IAITGSVGKTTTKE+LT Sbjct: 60 TLSERTLPIPEGKFLIEV---KNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLT 116 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 S KTY + S+NN +G+ TL+ +P+D + I ELG + GEI L +V+P I+ Sbjct: 117 HVFSKFFKTYRNVKSFNNILGLTYTLSNLPLDTELYIQELGTNRQGEIPELVEIVKPEIS 176 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T + AH + F I +I K I E G I F E K+K +TI Sbjct: 177 VVTAVEKAHTAGFKDISDIVKEKLSITE-----GAILSIVPIQFKEFSKSK------ETI 225 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG+ D +L + ++ ++ G+ ++ G + + L+ +G+ + Sbjct: 226 -TFGRE--GDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAEVFK 282 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISP 365 +++ + + F P E R + Q LID+SYNANP SM+ AI VLS Q P Sbjct: 283 VNIEKVSELIRTFTPPE-----MRLTVEQLNKVILIDDSYNANPKSMENAIKVLSLQELP 337 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419 ++A++G+M E+GE S+ H + E+L+ + + G F V K + Sbjct: 338 -----KVAIIGEMLELGEESKKEHEKIGELLNHAKVETLIAYGKETESTFKVFKGKKS-- 390 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y + + L FI++ G V+VK S ++ ++ E + + Sbjct: 391 ------YFTSQEELIKFIKTFHFQGKAVLVKGSRGNRLEKIARIIRERYKS 435 >gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] Length = 453 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 218/448 (48%), Gaps = 25/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ +S DSR I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 24 VSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL+ +N D + + KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--SVF 320 S+ V G EV V GI M Q+ + + L+ ++ ++ + + Sbjct: 256 NALGIASFTLVTPVG---EVGVELGI---MGQHNVANALAAAALSLEMGASLAEIGQGLA 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 H + +G R A + TLID+SYNA+ +MKAA+ +L S R +LG+M E Sbjct: 310 HLSKVKG-RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSA----VRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S + H + E + + V G + D + + M + I+ Sbjct: 365 LGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQ 424 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 425 QGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] Length = 450 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 139/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S S H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNL--LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L I+ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446 >gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC8] Length = 496 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 206/467 (44%), Gaps = 63/467 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQGK------------- 279 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 280 ----------------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ V IG H N L L ++ K L P Sbjct: 297 TFTLNTNIDIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPP 356 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ Sbjct: 357 KGRLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGD 408 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 + H L L+L I HV G H+ A+ +SI HY++ Sbjct: 409 AADDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTD 455 >gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] Length = 427 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 213/442 (48%), Gaps = 22/442 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + P F A+KG +DGHDF A+ GAG ++V+ ++ + P V Sbjct: 1 MTIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL-----VEAPQLVVK 55 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN IGV Sbjct: 56 DTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGV 115 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 116 PLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 175 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF GL GT +N D + + + H K ++ F +++ DF + Sbjct: 176 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHGAEDIDFFASDVRITP 232 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + ++ + ++ + G H N L + + A + + L+ GR Sbjct: 233 KTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVRQGLTQLQAVPGR- 291 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + L+ G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+GE + Sbjct: 292 -LFPIELSAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVD 345 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445 H + + + V G AL +A H T+ L ++ ++ Sbjct: 346 CHRQVGDAAKQAGVDKVLSVGVLSQALSEASECGEHFQDKNTLTARVSELLLEHPVI--- 402 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 V++K S S ++ L E+ Sbjct: 403 TVLIKGSRSAAMENVVRALQEK 424 >gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] Length = 450 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 214/449 (47%), Gaps = 35/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 + + DSR I F + G DGH+FI A+ GA AS SL + Sbjct: 22 ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGAS---------ASFWSLPVEQA 71 Query: 84 ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 PV V D L A+ +LA + A ++AITGS GKTTTK++ LS KTY Sbjct: 72 PKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKT 131 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+YNN+IG+P T+ MP D + + E+GM H EI L+ + +P A IT I AH+ N Sbjct: 132 QGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQPKAAAITMIGEAHIEN 191 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 E IA AK EI +GL G + + D+ L A ++T+ +FG N D Sbjct: 192 LGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPLTATL----VQTVTTFGIG-NGDVH 246 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + Q+ + ++G++ + G Y++ N L+ I + + L+ Sbjct: 247 AEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALIAYTIGRFFGLSIPEIRQGLAH 302 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + R + A N ++ + YNANP +M + + +GRRIAVL DM Sbjct: 303 VSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLDTFKNLP--TKGRRIAVLADML 357 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFL 435 E+G+ S + H ++E + + ++L G + ALK+ L P+ ++ + + L Sbjct: 358 ELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQKYPQLPVFYFEKEKNKLIE 417 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ +L D +++K SNS G + ++ L Sbjct: 418 AVKQNLESTDSIMLKGSNSMGLFEVVEQL 446 >gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 457 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 13/384 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++NG+SID+R+I + + I G ++GH+FI A+ GA + D I ++ P Sbjct: 26 WINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGATATL--WDKNQPIPNIDFPF 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L A+ LA A R + II ITGS GKT+TK++L L ++ KT+ +G+ NN Sbjct: 84 ILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDILFNILQTVYKTHKTLGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL M + + + E+GMS LGEI L+ + +A+IT H+++ +E Sbjct: 144 HLGVPLTLLEMAENTEIAVIEMGMSGLGEIELLSKIASSDVAIITNSTNVHINDLGSVEN 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWK 264 I AK EI EGL+ G +F+ + DS L+ L +K +FG +++ D+ ++ Sbjct: 204 ILKAKLEIIEGLKPHG-LFIYFGDS--PPLRVGVEKLDLKQKKVTFGINRDNDYTVKLIS 260 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 +E + E+ + S + +G H N + + ++ + + Sbjct: 261 SENEGIYFEL-VGSDSPRLFLSMLGNHQIYNAAAAIAVAQYFNITLEKIQEGMLKIEATG 319 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +C F ++++SY +NP S+++ + + + + +I VLGDM GE Sbjct: 320 MRNELIKC----NGFDILNDSYKSNPISLRSVLDTMYSFKKYKQ--KIVVLGDMFGTGEN 373 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 + HID+ E + I +V+ G Sbjct: 374 EITTHIDIGEEIDPSQIDYVFTIG 397 >gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] Length = 450 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 214/449 (47%), Gaps = 35/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 + + DSR I F + G DGH+FI A+ GA AS SL + Sbjct: 22 ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGAS---------ASFWSLPVEQA 71 Query: 84 ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 PV V D L A+ +LA + A ++AITGS GKTTTK++ LS KTY Sbjct: 72 PKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKT 131 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+YNN+IG+P T+ MP D + + E+GM H EI L+ + +P A IT I AH+ N Sbjct: 132 QGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMAQPKAAAITMIGEAHIEN 191 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 E IA AK EI +GL G + + D+ L A ++T+ +FG N D Sbjct: 192 LGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATL----VQTVTTFGIG-NGDVH 246 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + Q+ + ++G++ + G Y++ N L+ I + + L+ Sbjct: 247 AEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALIAYTIGRFFGLSIPEIRQGLAH 302 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + R + A N ++ + YNANP +M + + +GRRIAVL DM Sbjct: 303 VSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLDTFKNLP--TKGRRIAVLADML 357 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFL 435 E+G+ S + H ++E + + ++L G + ALK+ L P+ ++ + + L Sbjct: 358 ELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQKYPQLPVFYFEKEKNKLIE 417 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ +L D +++K SNS G + ++ L Sbjct: 418 AVKQNLESTDSIMLKGSNSMGLFEVVEQL 446 >gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 452 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A + GAG ++VN + + +P Sbjct: 24 IDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKL-----DIDLPQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + DF + ELG +H GEI + L RP A++ +A AHL F +E + Sbjct: 139 IGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL G +N D++ + L +S +G + + F + ++DF Sbjct: 199 AKAKGEIYTGLPDNGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAADSDFTATHIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + + +EV+ G H N L + + A D L+ G Sbjct: 256 TSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAAALSMAVGATHDAIKTGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A N+ L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G+ S Sbjct: 316 RLFPVQLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + E + V +G A+ A + H+++ L +++ + + Sbjct: 369 EACHIQVGEAAKAAGLDCVLSAGKLSQAISHA--SGVGEHFADKA-ALIERLKTLIAEKQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 + V+VK S S +++ L E Sbjct: 426 IVTVLVKGSRSAAMEEVVHALQE 448 >gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] Length = 453 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 212/442 (47%), Gaps = 19/442 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I + F A+ G +D HDF AV GA ++V ++ A L + Sbjct: 27 VSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVERELDADCSQLVVA----- 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +L + + +AITGS GKTT KEM+ LS + G++NN IGV Sbjct: 82 DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R + D+ + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + A Sbjct: 142 PLTLLRSTAEDDYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGVKRA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KWKQC 266 K EI++GL +N + +L K L KT+ +F + NADF R + Sbjct: 202 KGEIYQGLRAGAVAIVNLESHGGDLWKTD---LADKTVKTFSTTDHNADFYPRDVRLNAL 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S+ V G+ ++V IG H N L + + A + L+ H + + Sbjct: 259 GVASFTLVTPIGE-VDVELGIIGQHNVANALAAAALSLEMGASLAEIRHGLA--HLAKVK 315 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ L Q TLID+SYNA+ +MKAA+ +L S R +LG+M E+G+ S Sbjct: 316 GRVDLTHLRQD-ITLIDDSYNASVPAMKAAVDLLGGFSA----VRWLILGNMAELGDESL 370 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H + E + ++ V G + D + + M + I+ V Sbjct: 371 ALHQQVGEHAAPFSFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGRAQV 430 Query: 447 VVVKSSNSCGFYRLINLLLEEF 468 ++VK +NS G ++ L E+F Sbjct: 431 LLVKGANSAGMSKIAAALKEKF 452 >gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] Length = 450 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L I+ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446 >gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis ATCC 367] gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis ATCC 367] Length = 461 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/440 (30%), Positives = 208/440 (47%), Gaps = 36/440 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR + P F + G H DGH FI A+ GA + D+ ++ PV Sbjct: 26 VTSVAFDSRHLQPGGLFIPLTGEH-DGHQFIQSAIDHGAVATLWARDLASAPADF--PVI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L AL LA + ++A+TGS GKTTTK+M+ LS+ + KT+A ++ Sbjct: 83 QVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDMIAAVLSTQFNVTKTHA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+T+ M + + + E+GM G++ FL+ LV P +A+IT I AH+ F Sbjct: 140 NNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQLVSPDLALITMIGEAHIEFFGTR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----- 258 ++IA AK EI GL G N D+ LL+ ++ L + + +FG+ D Sbjct: 200 DKIADAKMEITHGLSDDGVFVFNGDEP---LLRERATELTQRQV-TFGQQGTDDLFATDV 255 Query: 259 -QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + W EV IG + N L L + + ++A +AL Sbjct: 256 TGTPTTTSFTTNQWPEVTFTIPM-------IGTYNVNNALAALSVAMLYRIRPESAKQAL 308 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + E R + A ++ + YN+NP + K ++ SQ G+R VLGD Sbjct: 309 ATVSLTENRAEWVTSASGAA---ILSDVYNSNPTAAKEVLTAFSQTPV--TGQRYVVLGD 363 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMD--G 432 M E+G+ + + H LA + I HV+L G H+ A + V + ET D Sbjct: 364 MLELGDQADAMHASLASAIDATKIDHVYLVGPHMLALQAALAQQQPQLAVSHYETTDLAT 423 Query: 433 LFLFIQSSLVDGDVVVVKSS 452 L + +Q+ L D +++K S Sbjct: 424 LTVDLQNQLTADDQILLKGS 443 >gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E] gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E] Length = 461 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 210/450 (46%), Gaps = 23/450 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R P FFA+KG +DGH+++ AV +G VVV+ + +P Sbjct: 25 IESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVAQGCTAVVVDHPC-----EIDVPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +AITGS GKTT KEM L + G+ Sbjct: 80 VVKDTRLALGRLAAWLRRELEPLTVAITGSCGKTTVKEMTAAILQRTAGDDEAVLFTEGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ ++ + ELG +H GEI + HL P +A++ ++ AHL F Sbjct: 140 FNNDIGVPLTLLRLTEKHEYAVIELGANHAGEIAYTAHLTMPDVALVNNVSAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR 261 +E +A AK EI+ GL G LN D ++ + + SF AD+ Sbjct: 200 VEGVAQAKGEIYSGLTPDGVAILNLDSNYAHYWGGD---INDREFESFAYDHVGADYYAE 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K S + ++++ +G H N + + + A ++ + L + Sbjct: 257 KIMLSEYGSRFTLNTPKGAIKIELPYLGKHNVANAVAASALAMNVGASLEDIKRGLE--N 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +G+ + L+ L+D++YNAN AS+K+AISVLS + E RI GDM E+ Sbjct: 315 PSHVKGRLFPIQLSTNLL-LLDDTYNANVASVKSAISVLSD---YREAFRIFAFGDMAEL 370 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGLFLFIQSS 440 G+ + S H ++A+ N+ V G + A +H E + L I Sbjct: 371 GDETISCHQEVADFAKAANLDLVVTYGSESAVVSKACG-GVHFSNKEALIASLKEIISHQ 429 Query: 441 LVDGD--VVVVKSSNSCGFYRLINLLLEEF 468 L + + V++ K S S +IN L + F Sbjct: 430 LKENEDIVLLAKGSRSMKMEDVINSLKDRF 459 >gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37] Length = 447 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 140/433 (32%), Positives = 212/433 (48%), Gaps = 39/433 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 +D R P F A G H DGHD+ A + GA VA +GS ++P V+ Sbjct: 31 LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGA---------VAVLGSRPTTLPTVVVE 81 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LA V ARLR + T++ +TGS GKT+TK++L LS T A IGS NN + Sbjct: 82 DARAALQALAAHVVARLRDRLTVVGLTGSQGKTSTKDLLAAVLSHTGSTVATIGSLNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R D F + E+G +G I LT LV +AV+ + AH+ F E IA Sbjct: 142 GVPLTMLRTTPDTRFLVLEMGARGIGHIAELTALVALDVAVVLNVGQAHIGEFGSREAIA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DFQLRK 262 +AKAE+ +GL GT LN DD +++A + + +FG++++A D L + Sbjct: 202 TAKAELLQGLVPGGTAILNADDPRVLVMRALTDGPAL----TFGRAEHAHVRVLDLALDR 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + ++ S V +G H A N +D L+ Sbjct: 258 LGRPA----FTLRTADASAPVALPLVGAHQALNASAAAAAGLAAGIPLDVTAATLATASL 313 Query: 323 KEGRGKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 ++R L G +L+++SYNANP S +AA+ L+ I GRRIAVLG+M E Sbjct: 314 -----SKWRMELRGLSGGVSLLNDSYNANPDSTRAALDALAAIE---AGRRIAVLGEMRE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ S++ H + E + V + + A R++ + + D +++ + Sbjct: 366 LGDDSEAEHRAIGEYAARAADLVVAVGEAAAPIAEGAGDRAVALADN---DAAVDWLRRA 422 Query: 441 LVDGDVVVVKSSN 453 L GDVV+VK+S Sbjct: 423 LTAGDVVLVKASR 435 >gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] Length = 433 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 222/451 (49%), Gaps = 24/451 (5%) Query: 18 SIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 SIG + Q ++N + D+R+I P FFA+KG +D + F A++ GA +++ + Sbjct: 3 SIGSLYQHYLNHSTVCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEAY 62 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V DVL AL LA R + ++ +TGS GKTTTKE++ LS K Sbjct: 63 QTNERCLL----VSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYK 118 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 T+A G+ NNHIGVPL++ + +++ + E+G +H EI FL + +P +IT I A Sbjct: 119 TFATRGNLNNHIGVPLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLITNIGMA 178 Query: 196 HLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 HL F G E + KAE+F L++ +G F+N ++ + LL+ A K +Y +S Sbjct: 179 HLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPY--LLEMSEKAQLSKVVYYGTESS 236 Query: 255 NA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 N +L K E SW Q + + + G + +N+L + I Sbjct: 237 NTVAGKLLKTDPFIELSW---QSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVEI 293 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 LS + P R + + A N T+I + YNANP+SM AA L+ I + Sbjct: 294 NAGLSGYFPNNNRSQLTKTASN----TVICDFYNANPSSMAAA---LTNIELLKGSNKTV 346 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 ++GDM E+GE S H+++ E +I+ + G H K ++ H+ T Sbjct: 347 IIGDMFELGEESAKQHLNIIEQAEKLDIATLIFIGKHFYHAK----QNHKGHFFATPAEA 402 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 F++++ + ++++K S +L+ LL Sbjct: 403 AAFLKTNPLKNALILLKGSRGMALEQLMPLL 433 >gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] Length = 460 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/413 (29%), Positives = 207/413 (50%), Gaps = 12/413 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + IS +SR+ F AIKG ++DGH F +V+ G+ L +++ ++ S+ P Sbjct: 30 IQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGS-LAILSEKIL----SIDHPQI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ + A+ +LA R +S A IAITGS GKT+ KEM LS + T + + NN Sbjct: 85 IVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILSQVGSTISTKKNNNNS 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GV LTL R+ + + E+G S LGEI+F + +V P + +I + +HL F + Sbjct: 145 LGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIVNPDVVLINNLFASHLKGFGSFSNL 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 + AK+EIF GL K T +N D+ + K K L +S K K + F + Sbjct: 205 SRAKSEIFFGLSKFNTAVINLDNHDIKHWKHKIRNLSKVWFFSLKKKKKSHFYSNTISEK 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ V H G H N + + + + A +D K L FHP +GR Sbjct: 265 NFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAALSISVGAKIDQIEKGLKNFHPIDGR 324 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++D++YN+N SMK+AI VLS++ G R+ V+GDM E+G+ S Sbjct: 325 MYPVYISSEK---IILDDTYNSNFGSMKSAIDVLSKM----PGYRVLVVGDMLELGQYSS 377 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 +H ++ ++ N++ + G + L + + +H H + + +++ S Sbjct: 378 FYHKKISRIIQNKNLNTIISFGKYSLFISQSFQNGMHFHSKKKLTKKLIYLIS 430 >gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] Length = 470 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 24 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 79 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 80 S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 130 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 131 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 250 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 251 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 301 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 302 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 358 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 359 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 416 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L ++ +L D +++K SNS G + ++ L Sbjct: 417 NQKYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQL 466 >gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. [Bacillus cereus E33L] gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus E33L] Length = 454 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 208/399 (52%), Gaps = 48/399 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS+++ F I DGH+++ A+ GA +++ S G+ IP Sbjct: 27 IHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGA----ISSLWKKSYGTPPKGIP 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 82 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IG+PLT+ M D +F I E+GMS G+IR L+ + +P +AVIT I +HL + Sbjct: 142 SQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRK 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----Q 259 EIA AK EI +GL + G N D+ F K+ + KT FG+ D Q Sbjct: 202 EIAKAKLEIIDGLRENGLFLYNGDEPLFS-RNNKTSGVNCKT---FGEKDTNDLFPTNVQ 257 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY----HMAQNMLMTL-GIV-----SILTAD 309 L ++ G ++ H I Y H N+ T+ GI + T Sbjct: 258 LDEY--------------GVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQFYKVPTEK 303 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A++ +++ R++ + FT+I++++NA+P+SMKAAI L +++ + Sbjct: 304 IQEALQQINITQ------MRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAY--K 355 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G Sbjct: 356 KKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYG 394 >gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] Length = 460 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 196/387 (50%), Gaps = 47/387 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I + F A+KG +D HDF A GA ++V+ + + +P Sbjct: 24 IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKPL-----PVELPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL + A L+++ T +A+TGS GKTT KEM L++ + A Sbjct: 79 VVSDTRIALGMMG--AWLKAQMTEKYGLKTLALTGSCGKTTVKEMSAAILANKGQVLATA 136 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IG PLTL R+ + + + ELG +H EI + T+LV+P++A+I IA AHL F Sbjct: 137 GNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEIFYTTNLVKPNVALINNIAAAHLEGF 196 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 ++ +A AK EIFEGL + GT +N+ D + ++ L A+ L T S AD Sbjct: 197 GSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEHQVLTFST-----DSHQAD 251 Query: 258 FQLRKWK----------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + K K C+ +++ L M V + + A + ++LG Sbjct: 252 YFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALA---AAALTVSLGAT---L 305 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ADV ++ ++ + + Y LID++YNA+ A++KAAI VL+ Sbjct: 306 ADVKAGLETMANVKGRLDITEPY------ARLRLIDDTYNASVAAVKAAIDVLASF---- 355 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAE 394 EG+R + GDM E+GE S + H ++ E Sbjct: 356 EGKRYFIFGDMAELGEESDNLHREVGE 382 >gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 434 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 228/442 (51%), Gaps = 32/442 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88 I+IDSR P+ FFA+KG + DG+ F A+Q GA V++ D+ A + +P Sbjct: 17 ITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDPDVAADDRYIVVP---- 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL A+ +LA R + KA IIA+TG+ GKTTTKE++ L+ K ++NNHIG Sbjct: 73 -DVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTERNHNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + FG+ E+G +H GEI L + +P +IT AHL F E + Sbjct: 132 VPLTLLRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFGIITNFGRAHLEGFGSFEGVIE 191 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ--LRKWK 264 AK E+F+ L E G +F+N +S + KAK GI I S+G + AD + Sbjct: 192 AKTELFDYLREHKGRVFINIGNSNI-VEKAK----GIGNI-SYGINNDKADVSGYITGQN 245 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 C SW + + V H +G + +N+L + + + + +AL + P+ Sbjct: 246 PCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEVEPNDINEALCGYIPEN 305 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N LI ++YNANP+SM AA+ + + PH ++ +LGDM EMG+ Sbjct: 306 HRSQYMKTDRND----LIIDAYNANPSSMAAALRNFNSLPYPH----KMVILGDMLEMGD 357 Query: 384 LSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H ++ ++ + +I V L G + A D+ ++ T+D L +++++ Sbjct: 358 TAVEDHEEIVNIIRNQLSIDEVLLVG-EIFASIDSGYKTF-----VTVDDLSAYLEANPP 411 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 V++K SN G R+I L Sbjct: 412 KDTAVLLKGSNGIGLERIIAYL 433 >gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] Length = 444 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/416 (31%), Positives = 205/416 (49%), Gaps = 53/416 (12%) Query: 10 LLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++ A I + G++ G +S D+R++ + F A++G H+ G DF+ A Sbjct: 1 MIAAWTAKEIATIVGGYLRGNDDWRALEVSTDTRTLTAGQLFIALRGEHFCGEDFLQTAQ 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++GA V+V + IP V+D L AL LA A R +S A II +TG+ GKT+ Sbjct: 61 ERGAVAVIVQ-----EYREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKTS 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML LS+ KT A +G+ NN IGVPLTL R+ + F + E+G +H +I L + Sbjct: 116 TKEMLYRILSAQGKTLATVGNLNNDIGVPLTLLRLQNEHRFAVIEMGANHPRDIERLVKI 175 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +AVIT ++ AHL F ++ +A+AK+EI+ +G + +N D A Sbjct: 176 VCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRF--SSGALVVNAD---LPQAAAWLQE 230 Query: 242 LGIKTIYSFGKSKNAD------------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 G ++I +F ++A F L Q +E +W QL G+ H + Sbjct: 231 FGHRSIQTFALEQSAQWTAADISDNGQRFTLMHLAQRAEIAW---QLCGR------HNVA 281 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +A + VS+ + +AL ++ R AL+ TL D++YNAN Sbjct: 282 NALAATAAASFAGVSLA-----QSAQALQGLRLQQSR----LVALHVRHHTLYDDTYNAN 332 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 PAS KAAI V+ + + H + + G M E+G S + H ++A I H W Sbjct: 333 PASFKAAIEVI-KTAAHS----LVIAGKMGELGAQSAALHAEVAAFAREKGIKHFW 383 >gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 182/384 (47%), Gaps = 18/384 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR++ F A++G +D HDF+ ++ +V T L++P Sbjct: 24 DGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVAET----VPDGLTVPALI 79 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYN 144 V D AL ++A R + K +I +TGS GKTT KEM+ L + + A G++N Sbjct: 80 VQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILEAACGVDNYLATRGNFN 139 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLTL R+ + ELGM+H GEI L+ + P + ++ H + +E Sbjct: 140 NDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIAEPTVGLVNNAQREHQEFMASVE 199 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A + GL G DD F L + + + +FG S +AD + + Sbjct: 200 AVAQENGAVLAGLPADGIAVFPADDEFTPLWR---QLAAQRKVLTFGFSDDADVRC-SYS 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S ME+ + V G H +N L + + D + L F P Sbjct: 256 ANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIACALAIGIATDAIARGLQAFAPVS 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR +R + A N +ID++YNANP S++AAI VL+Q+S RI VLG+M E+G Sbjct: 316 GRLQR-KLAANGAL--VIDDTYNANPDSVRAAIDVLAQMSAP----RILVLGEMGEVGND 368 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 + +H ++ +I +V G Sbjct: 369 GRQYHEEIGAYARAKSIEYVLTLG 392 >gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] Length = 450 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAEGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L ++ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQL 446 >gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfotomaculum reducens MI-1] gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 457 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 226/461 (49%), Gaps = 35/461 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ Q I G + P + GI DSR P+E F A++G DGHDF A+++G Sbjct: 4 YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V+ ++ + IPV V + L AL +LA R R ++A+TGS GKT+TK+ Sbjct: 64 ASALLVSREITGI--APQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KT G++NN +G+PLTL + + + E+GM GEI FL L +P Sbjct: 122 MIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDFLAGLAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243 AVIT I AHL +E IA AK E+ + + G LN D + EL + + Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELARNCQGKVW 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302 + ++ G D Q + + G E+ G H N L +G+ Sbjct: 242 LYSLEGIG-----DLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVG 296 Query: 303 --VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + ++ + L + H R + + G +I+++YNANP+S KAA+ VL Sbjct: 297 LQLGLQLEEIAQGLAQLCLTH------SRLQILSSNGRV-IINDTYNANPSSTKAALKVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSLYNISHVWLSGFHV 411 + + R+IAVLG+M E+G+L QS H ++ E ++S+ N++ W++ Sbjct: 350 KETA---RSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNLAQ-WITQG-- 403 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 LK L + E + + + + L GD ++VK S Sbjct: 404 -GLKGGLSQERVFQCQENSEAVEV-LGKILKPGDTILVKGS 442 >gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 455 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 214/448 (47%), Gaps = 27/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 + ++ DSR I+ F IKG DGHDF+ A++ GA + G+ + P Sbjct: 24 ITSVAFDSRKISQGALFVPIKG-ERDGHDFVGSAIEAGASATLWEA------GNPNKPEG 76 Query: 85 --VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D L A+ LA + T+++ITGS GKTTTK+M+ L+ Y + Sbjct: 77 IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAKRFNVYKTQAN 136 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVP+T+ M + + E+GM G++ L+ LVRP +AVIT I AH+ F Sbjct: 137 FNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLVRPDVAVITMIGEAHIEFFGS 196 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 ++IA AK EI + L++ G N D E L A+ A + +FG + + Sbjct: 197 RDKIADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLPQDKSTFGFADSDSIHASD 252 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFH 321 + S+ ++ G E IG H N + + +V + D I A L+ F Sbjct: 253 LRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFV 309 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + + + I YN+NP ++KA + Q+ +GRRIAVL DM E+ Sbjct: 310 PTANRMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLEL 366 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436 G S H LA L I+ ++L G + L AL +++H + + M L Sbjct: 367 GSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDD 426 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++S + D+V++K S+ R+++ L Sbjct: 427 LKSDIHSQDIVLLKGSHGMHLERVLDRL 454 >gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] Length = 472 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 204/447 (45%), Gaps = 24/447 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87 ISIDSR++ + F AI+G +DGHDFI + +GAG V+++ + I + G Sbjct: 24 ISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGGVMIDQAHASRINTPRATGRGAR 83 Query: 88 --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + AL LA R + AITG+ GKT+TKEM + + A G++NN Sbjct: 84 VVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTKEMAAMVCGRRYRVLATTGNFNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL R+ I E+GM+ GEI L + P + V+ + HL I+ Sbjct: 144 EIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICEPDMGVVLNVGAGHLEGVENIDG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A AKAE+ E L T +N DD ++K G + ++G + AD ++ Sbjct: 204 VARAKAELLEALTDKDTAIVNADD--MRVMKMAQKVRG--RVVTYGMRQKADITAASVRR 259 Query: 266 CSEQSWMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++ L + + V G M N L I + L L F P Sbjct: 260 QDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAAIGAGLGLSAPEIKAGLENFSPV 319 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R + FTL+D++YNANP SMKAA++ L ++ G GR I ++GDM E+G+ Sbjct: 320 PG---RMTITQTRAGFTLVDDTYNANPESMKAALAGLREL--KGAGRGILIMGDMFELGD 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 + H + + + ++++G A P I + ET + + Sbjct: 375 HAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAAGMTPEKIMIESKET---IIEAV 431 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 L GD V+VK S ++ L Sbjct: 432 CPVLEPGDWVLVKGSRGMRMETVVQAL 458 >gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli WV_060327] gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli RN587/1] Length = 452 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 218/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S Sbjct: 316 RLFPIKLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ H+ + E I V G A+ A + H+S+ L ++S + + Sbjct: 369 EACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--SGVGEHFSDKT-ALIARLKSLIAEQQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 V ++VK S S ++ L E Sbjct: 426 VITILVKGSRSAAMEEVVRALQE 448 >gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] Length = 455 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK405] Length = 456 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKEGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 ECNFLDQRIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSKLELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AANGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREELT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 457 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 135/438 (30%), Positives = 214/438 (48%), Gaps = 22/438 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I IDSR F + G D H F+ G + + + + S +I + V Sbjct: 28 NIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRVAISSRKDIFSKPDFNIVL--V 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D + AL L + R + ++ +TGSVGKTTT+EM +ALS +K + ++N+ +G Sbjct: 86 EDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREMTALALSDLK-VFKTPNNFNSQLG 144 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP+T++R+ D + GI ELGMS GE+ + +V A+IT I AH+ N E I S Sbjct: 145 VPVTISRI-TDEEIGIIELGMSLFGEMERIAKIVGCDSAIITNIGTAHIENLHTKENIRS 203 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCS 267 K I +G++ +FLN D+ ++L GI IY F +K N D Sbjct: 204 EKFHIMDGMKAGSVVFLNADN---DMLSNPPKREGI--IYKFFSAKGNTDCDYYATDIVF 258 Query: 268 EQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + E + +S++V + G H N L+ L + D+++A K LS F Sbjct: 259 HNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAHHYNLDIESASKHLSSF----- 313 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 RG +R L + T+ID++YNA+P SMKA++S+L R+IAVL DM E+G Sbjct: 314 RGFSHRQELIELKNLTVIDDTYNASPDSMKASLSILKDFRAR---RKIAVLADMKELGAD 370 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 FH ++ E +S N+ + LA + I ++ + L ++ L DG Sbjct: 371 EVKFHREVGEFIS-ENVKPDAVFSVGELAREIVNCTDIFGKSFDSNEALEKYLLEYLEDG 429 Query: 445 DVVVVKSSNSCGFYRLIN 462 DV + K SNS + +++ Sbjct: 430 DVCLFKGSNSMRLFDVVD 447 >gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 465 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 183/388 (47%), Gaps = 23/388 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + + I G +GH ++ A+ GA V+ + + V Sbjct: 27 IQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANGAKAVL--WERKEPNPPKEVVVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL LA A R + ++ ITGS GKT+TK++L L T +G+YNN Sbjct: 85 LVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKDILASLLQEHYITQKTLGNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + +V+ + E+GM +LGE+ FLTH+V P IA+I+ + AHL N +E I Sbjct: 145 IGVPLTLLSLSENVEAAVIEMGMENLGELSFLTHMVEPDIAIISNVGTAHLENLKTMENI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI EGL++ G N D + ++ G I +FG D+ + Q Sbjct: 205 AKAKLEIVEGLKEHGLFIYNGDQEILQNAVTQAQIPGHIRIRTFGVKPQNDYVISHITQK 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + L IG H A N L LSV +EG Sbjct: 265 RE--GVSFCLNDDVCPYHVDMIGKHQAMNATAAWIAAKAL---------GLSVEEIREGY 313 Query: 327 GKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCE 380 + L G ++++SY +NP S AA+ + + P+ +IAVLGDM E Sbjct: 314 QNIEKTGLRNELVDFGNCLILNDSYKSNPQSALAALDTMEEFDVPY----KIAVLGDMLE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ S H L + L+ Y+++ V G Sbjct: 370 LGDTSDMIHYTLGKDLAKYHLNEVLTIG 397 >gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] Length = 461 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 128/405 (31%), Positives = 195/405 (48%), Gaps = 24/405 (5%) Query: 6 TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T LL+A+ G +G + V+G+ DSR I P F + G +DGH +I A++ Sbjct: 5 TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEA 64 Query: 64 GAGLVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + V TD + V + AL LA + R + + ITGSVGKT Sbjct: 65 GAAGCLTARVRTDYREDKFYIQ-----VGNTERALRDLAAWYKDRFQIPFVGITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K+M+ LS K G++NN+IG+PLTL R+ G+ E+GM GEI +L+ Sbjct: 120 TAKDMIAAVLSVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEIDYLSD 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKS 239 +VRP + VIT I AH+ E I AK E+ + K G + LN DD L+ K+ Sbjct: 180 IVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKT 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNML 297 ++ ++ GK+++AD++ + S + + ME V +G HM L Sbjct: 240 P---VQAVFC-GKAEDADYRA-QVTGGDGVSHIHCHITTPKMERDVKIPALGEHMIYPTL 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + D ++ F P R +G T++D+SYNANP SM+AAI Sbjct: 295 IAAAVGEHFGLTPDEIEDGIARFVPTR---MRMNVIQREGEITILDDSYNANPQSMRAAI 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 SVL+ ++A+LGDM E+G + + H + + L I Sbjct: 352 SVLADTH---SSWKVAILGDMFELGPYAPALHAGVGDYLGKRGID 393 >gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] Length = 461 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 188/374 (50%), Gaps = 21/374 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPV 85 V IS D+R + FFA+KG ++D H ++ AV +GA +VV I S L +P Sbjct: 25 VENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVAQGAVALVVQ-----KINSHLDVPQ 79 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----G 141 V+D AL +LA R ++A+TGS GKTT KEM L + G Sbjct: 80 LVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKTTVKEMTASILQKSAVNSDTVLFTEG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN IGVPLTL R+ + F + ELG +H GEI + T L +P +A++ +A AHL F Sbjct: 140 NFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIAYTTSLAKPDVALVNNVAAAHLEGFG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 IE +A AK EI+ GL +G +N + ++ +K + +G + I F + ADF Sbjct: 200 SIEGVAQAKGEIYRGLPASGVAIINKEHNYS--IKW-AQEIGERAIQYFAYQDATADFYA 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + S E+ + + +G H +N L + + A + K L + Sbjct: 257 DNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNALAATALAMNVGASLTQVKKGLEMR 316 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +GR + N L+D++YNAN S+++AISVL + S RI ++GDM E Sbjct: 317 SQVKGRLFPIQPCEN---LLLLDDTYNANVDSLQSAISVLQKYSAF----RILIVGDMAE 369 Query: 381 MGELSQSFHIDLAE 394 +GE SQ H +A+ Sbjct: 370 LGENSQLCHQQVAD 383 >gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] Length = 452 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 209/435 (48%), Gaps = 21/435 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +G V+ +S D+R++ P F A++G +DGHD+I A++ GA V + G Sbjct: 17 EGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGGAACAVAHERRDYGAG---- 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V + AL LA A R R + ITGSVGKTTTK+M+ A+S+ +T G+ Sbjct: 73 PVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKDMIAAAVSAGFQTLKTEGNL 132 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P TL + + + E+GM GEI L + RP + VIT I +H+ Sbjct: 133 NNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVARPTLGVITNIGVSHIEQLGSR 192 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I AK E+ + L +FL DD +LLK S Y ++ Sbjct: 193 ENIMKAKLELADALPDGAPLFLCGDD---DLLKKVSIPRLDVRFYGV-ENPACALHAADI 248 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ Q+ +Q G + IG H +N + G+ L + AL+ + P Sbjct: 249 READAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGMALGIPAEKCAAALAAYVPS 308 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R R ++ G T++++ YNA+P SM+AA++ LS + GRRIAVLG M E+G Sbjct: 309 ---GMRQR-VVHWGSVTVVEDCYNASPDSMRAALTTLSAM--RCAGRRIAVLGGMLELGA 362 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 SQ+ H ++ + + + G ++ K+ S +S+ D L ++ Sbjct: 363 YSQAAHREVGRAAAGAGVDLLLAYGGDACYYSQGAKEGGVES--ETFSDKAD-LLARLRG 419 Query: 440 SLVDGDVVVVKSSNS 454 +L GD+V VK S Sbjct: 420 ALGPGDIVWVKGSRG 434 >gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] Length = 452 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/383 (30%), Positives = 188/383 (49%), Gaps = 16/383 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++ D+R + F A+ G +D HDF A+ GA ++V+ + +++P Sbjct: 24 LNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGAQALLVSKHL-----PVAVPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D A +L R +S A ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 79 VVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGETLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVP+TL R+ + + + ELG +H GEI + T LV+P A++ +A AHL F + + Sbjct: 139 YGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF+GL G LN D + L + + L KT++ F ++ DF R + Sbjct: 199 AKAKGEIFQGLPAHGIAILN--DESNDWLNWQ-NTLQDKTVWRFSPQAGECDFSARDIRI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + + E+V G H N L + + A + + L G Sbjct: 256 AQDGTHFVMNTPRGTAEIVLPLPGRHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R + +Q L+D+SYNAN SM AA+ VLS++ G ++ V GDM E+GE + Sbjct: 316 RLFPVRLSAHQ---LLLDDSYNANVGSMTAAVQVLSEMP----GYQVLVAGDMAELGEET 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 + H ++ E + V G Sbjct: 369 EKCHREIGEAAREAGLDRVLTCG 391 >gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] Length = 450 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ ++ + + L ++ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQL 446 >gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 318 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 157/269 (58%), Gaps = 13/269 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGKTT 121 A +V+ S P+ V D L AL+ +A + +R+ A +IA+TGSVGKTT Sbjct: 64 AIAAIVSEGKYKSF-----PLIIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ + Sbjct: 118 TKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L SHA Sbjct: 178 SNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL--SSHA 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 + + SFGK KNA+ L + E S Sbjct: 236 --NRNVISFGKDKNAEVCLLNLIRNDESS 262 >gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 455 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 231/464 (49%), Gaps = 28/464 (6%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L I+G+S ++ + ++ DSR I F +KG DGHDFI A+ GA V Sbjct: 12 LDTTIEGNSDPVI-----SSVAFDSRKINENALFVPLKG-ERDGHDFINSAIANGA--VA 63 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + + PV VDD L A+ +LA + ++ ITGS GKTTTK+M+ Sbjct: 64 TLWEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAV 123 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV+P + VI Sbjct: 124 LSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDVCVI 183 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIY 248 T I AH+ F ++IA AK EI + L++ G N D+ LL+ ++ + K+ + Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEP---LLRQRAEKISQAKSTF 240 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT 307 F ++ + L S++ + K S+ + IG H N + + + Sbjct: 241 GFN-DQDTIYALEFKSYMHHASFVTSSSEQKFSIPM----IGKHNVSNAMAAICVGHHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PH 366 D +LS F P R + + + + ++D+ YN+NP + KA ++ Q+ P Sbjct: 296 ETDDEIAASLSNFTPTANRMQWRKGDVGE---DIMDDIYNSNPTAAKAVLTSFGQVEVPE 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 G GRRIAVLGDM E+G S + H LAE L I+ V+L G + L++A+ P S Sbjct: 353 G-GRRIAVLGDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPAS 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K+S+ +++ LL Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455 >gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] Length = 463 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + D L + + FG + D + + S Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I AL G Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440 L + L+ NI + G H+ L + + VHY + + + ++Q+ Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D +++K S+S +L++ L+ + Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455 >gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus denitrificans ATCC 25259] Length = 464 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 228/462 (49%), Gaps = 49/462 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR++ P + F A++G +DG F A+Q+GA VV++ + VD Sbjct: 31 VTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQGAAGVVLDRAQAPDLAQ----ALRVD 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145 D AL +LA A R R ++AITGS GKTT KEML L A + G+ NN Sbjct: 87 DTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVKEMLAAILRVEAGDAAAVLHTEGNLNN 146 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL L R+ + + E+GM+H GEI +LT L RP IA++ AH+ +E Sbjct: 147 DIGVPLMLLRLRDHHQYAVLEMGMNHAGEIDYLTRLARPDIAIVNNALTAHIGFLGSVEN 206 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLR 261 IA AK EIF GL G N DD L + + + + FG S D++ Sbjct: 207 IARAKGEIFNGLTDAGIAVFNADDPHAGLWREANRQ---RCVVDFGLVHATSVRGDYRAD 263 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 ++ S + V L ++++ G H N L + L + + L+ F Sbjct: 264 EFG-----SALTVTLPNATLDIALQVPGEHNVMNALAAVAGAFALDVSHRSVVAGLAGFG 318 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR +R + AL+ T+ID++YNANP S+KAA++VL+Q P G++I VLGDM E+ Sbjct: 319 GVKGRLQR-KAALHGS--TVIDDTYNANPDSVKAALAVLAQ-QP---GKKIFVLGDMGEL 371 Query: 382 GELSQSFHIDL---------AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 G+ + S H ++ +L+L ++S ++ F A+ H+ E ++ Sbjct: 372 GDDAASMHEEIGVAARAAGVGRLLALGDLSCATVAAFGTGAM----------HF-ERIEE 420 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE--EFPAIQ 472 L +++ L G VV+VK S R++ E + P +Q Sbjct: 421 LLAELENELAPGTVVLVKGSRFMQMERVVKSFTEASDAPGMQ 462 >gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 223/458 (48%), Gaps = 41/458 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR ++ F + G H++GH F+ A++ A VV + +P + Sbjct: 29 VGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVARKDHHPVPE-GLPHW 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A +L + R + ++A+TGS GKTTT+E++ AL+ + + A G+ NN Sbjct: 88 IVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNNNND 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL + D + E+GM +GEI L+ +P +AVIT I AH+ I Sbjct: 148 VGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSRAAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADFQLR 261 ASAK EI L+ G I + DS E + + + + ++ + AD R Sbjct: 208 ASAKCEITTCLKPRGVIVIPAGDSLLEDALERIWRGRVIRVAVQDNQQLEPPEIADLHRR 267 Query: 262 KWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + C + + E+ L+GK+ + G+ H A N+++ L + L + ++ Sbjct: 268 PLPKADLVGCVDLAKGELLLEGKAYTLPLEGM--HNACNLMLALAVARELDV-CNESLSN 324 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L V P GR +R L G FT++DE+YNA+P +++AA+ +L+ I P GR AVLG Sbjct: 325 LKVDVPG-GRSRR----LKVGNFTVLDETYNASPEAVQAALELLA-IQP---GRHFAVLG 375 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----------HVLALKDALPRSIHVHY 426 M E+G+ S + H +AE + L G + ++LP H+ Sbjct: 376 TMLELGDQSVALHRQVAE-----RAVQIGLDGLVVVAAGAEAEAMATAAESLP---HLAV 427 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Q+ L GDVV++K+S +LI LL Sbjct: 428 VANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465 >gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 218/452 (48%), Gaps = 33/452 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I F + + DGH ++ A+ GA + D +I SI V Sbjct: 25 ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +L ++ ++AITGS GKTTTK+M L++ + ++NN Sbjct: 83 PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ FL+ L P +AVIT I AH+ F + I Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G + +N D+ LL K+ + + + +FG N D +R Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256 Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S+ +W EV + IG + N L L + +I VD KAL+ Sbjct: 257 SDATKTSFKVATWPEVDF-------TINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + ++ + YN+NP ++K + Q+ EG+RI VLGDM Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435 E+GE + H DLA+ ++ I V+L G + L + L +H+ + D L L Sbjct: 365 LELGEKAAEMHSDLAQAINPDRIDSVYLCGELMGYLAEKLREKFDETQIHHYQKDDLLTL 424 Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +++ L+ D+V++K+S+ +++ L+ Sbjct: 425 TSDLKNELMPDDIVLLKASHGIHLENVVSELI 456 >gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] Length = 454 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 126/390 (32%), Positives = 197/390 (50%), Gaps = 26/390 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T L Q QG I P ++ +S DSR IA F A+KG +D HDF V Sbjct: 5 TLAQLAQITQGQ-IESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQVVVT 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V + ++ P V D A+ +LA R +S+A I+ +TGS GKT+ K Sbjct: 64 GAKALLVERKL-----NVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGKTSVK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM LS KT G+ NN IGVPLTL R+ D +F + E+G +H EI + T++V+ Sbjct: 119 EMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTTNIVK 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++ + AHL+ F E +A+AK EI++G+ + GT +N DS+ E + + Sbjct: 179 PEAALVNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGTAIVNL-DSYSEKWQFQPR--- 234 Query: 244 IKTI--YSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +T+ YS ADF + KQ + + + S+++ G H N+L Sbjct: 235 -QTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPV--GSVDITLPLPGRHNIANVLAA 291 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A ++ ++ GR R + ++ ++D++YNAN SM AAI V Sbjct: 292 SALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHK---VVLDDTYNANDGSMIAAIQV 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L ++ G RI V+GDM E+G+ ++ H Sbjct: 349 LEKMP----GYRILVVGDMGELGDYAEDCH 374 >gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] Length = 453 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 216/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S DSR+I + F A+ G +D HDF A+ GA ++V ++ A L + Sbjct: 24 ISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQRELEADCSQLVVA-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL +L + + +AITGS GKTT KEM+ LS + G++NN Sbjct: 82 ---DTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + + + ELG +H+GEI + T LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTALVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLR--KW 263 AK EI++GL + +N D + E KA L KT+ +F + NADF R + Sbjct: 199 KRAKGEIYQGLREGAVAIVNLDSNGGEHWKA---VLADKTVKTFSATDHNADFYPRDVRL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ V G+ ++V IG H N L + + A + L+ H Sbjct: 256 NALGVASFTLVTPIGE-VDVELGIIGQHNVANALSAAALSLEMGASLAEIRHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L + LID+SYNA+ +MKAA+ +L S R +LG+M E+G+ Sbjct: 313 KVKGRVDLTQLRED-IKLIDDSYNASVPAMKAAVDLLGSFSA----VRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + V G + D H+ T + FI+ + Sbjct: 368 ESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG----HHFATHQDMMTFIEQHIEQ 423 Query: 444 ----GDVVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G ++ L E+F Sbjct: 424 QQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] Length = 463 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ + P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGT------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + D L + + FG + D + + S Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I AL G Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440 L + L+ NI + G H+ L + + VHY + + + ++Q+ Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D +++K S+S +L+ L+ + Sbjct: 429 LNPFDQILLKGSHSMSLEKLVERLVTD 455 >gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 463 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/450 (29%), Positives = 214/450 (47%), Gaps = 35/450 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---F 86 I DSR I + F +KG DGH+FI A Q GA VA+ +P Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGA---------VATFSEKELPGKPHL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN Sbjct: 79 LVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++I Sbjct: 139 IGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G+ G + D L + + FG + D + + Sbjct: 199 AQGKMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKD 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S V S+ + G + A N ++ + +L + I AL G Sbjct: 253 SLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGN 307 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S Sbjct: 308 RTEWKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV--LA-LKDALPRSIHVHY------SETMDGLFLFI 437 H L + L+ NI + G H+ LA L + + VHY + + + ++ Sbjct: 366 ILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYSAEQVHYFLKTEQEDQFEAMAQYV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Q+ L D +++K S+S +L++ L+ + Sbjct: 426 QNILNPFDQILLKGSHSMSLEKLVDRLVTD 455 >gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 463 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 29/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELSGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + D L + + FG + D + + S Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I AL G Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440 L + L+ NI + G H+ L + + VHY + + + ++Q+ Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D +++K S+S +L++ L+ + Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455 >gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] Length = 494 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 205/465 (44%), Gaps = 61/465 (13%) Query: 5 WTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W +L QA QG HS + I D+R I + F AIKG +D HDFI +A Sbjct: 9 WNQDNLKQATQGQWHHSDK--AEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAY 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 Q+GA +V + +P V D AL L + R A T+IA+TGS Sbjct: 67 QQGASAAIVE-----RVVDCDMPQLLVADTKLALGNLG---KFRRDAHPDLTVIALTGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + Sbjct: 119 GKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAY 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLK 236 +VRP +A+I I AHL F G IA AK+EI+ L G L + D F+ ELLK Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLK 238 Query: 237 AKSHALGIKTIYSFGKS----KNADFQLRKWKQCSEQSWMEVQLQG-------------- 278 S K SFG+ + A + + V + G Sbjct: 239 QASQF--TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHS 296 Query: 279 -------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ V IG H N L L ++ K L P +G Sbjct: 297 TFTLNTNIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKG 356 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + Sbjct: 357 RLMR----LSMDGYHIIDDTYNANPTSMLAAAKVLEA----ELDTKILVLGDIFELGDAA 408 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSE 428 H L L+L I HV G H+ A+ + I HY++ Sbjct: 409 DDEHTKLGHQLALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTD 453 >gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 459 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 211/447 (47%), Gaps = 25/447 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++ DSR + + F ++G DGH+F+ A Q GA + D S P Sbjct: 26 VSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQNGASATLWAADR--SYEDDGYPRI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L AL +L + ++A++GS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 83 VVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTKDMIASILSTQMNVTKTYA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GMSH GE+ L+ LV P IAV+T I AH+ F Sbjct: 140 NNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELSKLVTPDIAVLTMIGEAHIEFFGSR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + IA AK EI GL + GT N D+ +AK G KT FG+ + D Sbjct: 200 DRIADAKMEITHGLREDGTFVYNGDEPLLR-ERAKDLKQGQKT---FGRQLDNDIYATSV 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 +Q +V L E IG + N + + + +L L+ Sbjct: 256 EQSDHDLRFKVNLWPDE-EFTIPMIGEYNVNNAMAAMMVGHLLHVTPSHLKIGLANVELT 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + Q ++ + YN+NP ++K + L+++ GRR+ VLGDM E+G+ Sbjct: 315 ENRAE---WLTGQQGEKILSDVYNSNPTAVKEVLETLNELPE--TGRRLIVLGDMLELGD 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQ 438 S H LA + + V+L G + ALKD L P + HY+ + Sbjct: 370 ASAKLHAGLATEIDHQHFQKVFLVGNEMTALKDQLLADGYPAADLKHYASDDQDQLIDDL 429 Query: 439 SSLVDG-DVVVVKSSNSCGFYRLINLL 464 + D+V++K S+ ++N L Sbjct: 430 QKTIQADDIVLLKGSHGIHLENVLNAL 456 >gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] Length = 459 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 187/364 (51%), Gaps = 24/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR + F A+ G ++D HDF+ + KGA +V D V G L Sbjct: 29 INRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALVSRDDFVGVSGCLK---- 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L AL KLA A R + ITGS GKTT KEML L A G++ Sbjct: 85 -VDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLATVLREKFGADAVLATAGNF 143 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202 NNHIG+PLTL + + + + E+GM+H GE+ LT + +P++A++ AH+ F+G Sbjct: 144 NNHIGLPLTLLNLRENHRYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNG 203 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++IA AK+EI++G+++ G L DD+ + +A L ++T +FG ++ D Sbjct: 204 VDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQAACKNLNLQT-QTFGFAQ-GDIHAEN 261 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 S ++ +QG E VH + G H N + + + L+ Sbjct: 262 LVLQPLASEFDL-IQGS--ECVHITLPVAGRHNVSNACAAAALALAGGVKLTEIARGLAN 318 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F +GR + N T++D++YNANP SMKAA+ VL+++ R+ V+GDM Sbjct: 319 FANIKGRLQVKHGIKNS---TILDDTYNANPDSMKAALDVLAKMP----APRVFVMGDMG 371 Query: 380 EMGE 383 E+GE Sbjct: 372 ELGE 375 >gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC 14672] gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] Length = 476 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 136/449 (30%), Positives = 206/449 (45%), Gaps = 31/449 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR P F A G DGHDF V+ GA V+ + + +P V+DV Sbjct: 34 DSREAGPGSLFVAFVGERVDGHDFAARVVEAGAAAVLASR-------PVGVPAIVVEDVQ 86 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL LA R T++A+TGS GKT+TK+++ L T GS NN IG+PLT Sbjct: 87 AALGALARHVVGRLGTTLVALTGSAGKTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLT 146 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + F + E+G +G IR+LT L P + ++ + AH+ F G E+IA AK E Sbjct: 147 ALTATEETKFLVLEMGARGIGHIRYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGE 206 Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268 + E L E+ G LN DD + +++ A + FG+S AD + + S Sbjct: 207 LVEALPPAEEGGAAILNADDPLVRAMASRTKA----KVILFGESDEADVRAENVRLTDSG 262 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q + + +V G H N L + L D +ALS + G Sbjct: 263 QPSFRLHTPSGACDVTMRLYGEHHVSNALAAAAVAHELGMPADEIARALS----EAGSLS 318 Query: 329 RYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+R + + T+++++YNANP S A++ + + S GR AVLG M E+G+ Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAMGKASQAKGGRTWAVLGKMAELGD 378 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 + + H + + N+S + G + A + VH S+ + L + Sbjct: 379 EALAEHDAVGRLAVRLNVSKLVAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 437 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +S L GDVV+VK+S S G + LLE Sbjct: 438 RSELRPGDVVLVKASRSVGLESVAQALLE 466 >gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 451 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 129/445 (28%), Positives = 217/445 (48%), Gaps = 32/445 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI D+R + P E F A+ G +DGH F+ A+ +GA +V+ + +PV V Sbjct: 32 GIQTDTRVLQPGEIFLALGGEKFDGHQFVEMAITRGAVAAIVDY----TYNYPDLPVIKV 87 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L A +LA R + +I +TGSVGKTTTKE++ L + K + G++NN IG Sbjct: 88 SNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIAAVLGTRGKVHKTHGNFNNEIG 147 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL + DF + E+ M G+I LTH+ +P+I VIT + AH+ + IA Sbjct: 148 VPKTLLELSQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGSEQAIAE 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ + LNYD+ LL A + + + S+G S D Q + Sbjct: 208 AKCELLAEMPNDSVAVLNYDNP---LLMATAKQVWSGEVISYGFS-GGDIQGKL------ 257 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + +V++ G ++ + G+ H N L L + +L D ++V P +GR + Sbjct: 258 VDYQKVEVGGMTLPLPLAGV--HNGSNFLAALAVAKVLGVDWKLLEAGINVTMP-QGRSQ 314 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 ++ + ++DE+YNA P +M AA+ +L+Q R+IAVLG M E+GE S Sbjct: 315 SWKLPRD---IMILDETYNAAPEAMLAALELLAQTPGR---RKIAVLGAMKELGERSTKL 368 Query: 389 HIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 H + E + N+ + + ++ +P ++S+ + L ++Q Sbjct: 369 HQQVGETVKKLNLDGLLVLVDGPDAETIVTSAQGIPCERCHNHSDLVSLLKTYVQP---- 424 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468 GD ++ K+++S G +++ E Sbjct: 425 GDRLLFKAAHSVGLEKVVQQFCGEI 449 >gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] Length = 466 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 208/449 (46%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D HDF+ G + +V + A+I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPIDANIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTTEIREAAKSH-----HIMSFGTGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL + S++ + G+ H QN + L Sbjct: 262 TEIELLPQSANFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D +K L ++ +G + R + + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLDDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAQLPLDHIIAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 137/447 (30%), Positives = 212/447 (47%), Gaps = 18/447 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SID+RS+ P F + G H DGH+ + A+ K A + ++ +F Sbjct: 18 IQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAAALSKEAAAAFWKRGY-PNPPEDAVLIF 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL +L+ R + A II ITGS GKTTTK+++ L + + + G+ NNH Sbjct: 77 -VDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNH 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL ++ D + + E+GMS GEI L+ L +P +A+IT I AHL EEI Sbjct: 136 IGLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEI 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI GL+ G N D+ + + + SFG KS N + + Sbjct: 196 ARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIG 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ +LQ E +G H N L + L + + L Sbjct: 256 NDGSSF---RLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLS-- 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R + FT+++++YNA+PA+ KA +S++ Q+ G + VL DM E+GEL Sbjct: 311 -GMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLK--GYRHKYVVLADMLELGELE 367 Query: 386 QSFH-------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 + FH +LAE L I G ++ A ++ ++ E + ++ Sbjct: 368 EQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALK 427 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465 + DVV+VK+S ++N LL Sbjct: 428 EVIHPEDVVLVKASRGMKLEDVVNFLL 454 >gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] Length = 500 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 128/411 (31%), Positives = 195/411 (47%), Gaps = 47/411 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I D+R I + F AI+G ++DGHD++ A KGA L +V+ + + + P V Sbjct: 33 IITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGAVLAIVSRAVESDL-----PQLVVT 87 Query: 90 DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D AL KL R + ++AITGS GKTT KEML L+ I T G+ NN +G Sbjct: 88 DTKLALGKLGAYRRDQHPNLKVVAITGSSGKTTAKEMLGSILNRIAPTLITRGNLNNDLG 147 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP+ L + + + ELG +H+GEI + T LV+P +A + I AHL F G + IA Sbjct: 148 VPMMLLELTDAHRYAVMELGANHVGEIAYTTQLVKPDVACVLNIGTAHLGEFGGRDNIAK 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----NADFQLRKWK 264 K+EI++GL GT + + D +F+ L + + I +FG+ +A +++ K Sbjct: 208 TKSEIYQGLSDAGTAIVPFGDDYFDTLLNNAQQF-TQNILTFGERDVSLADAGVDMQQAK 266 Query: 265 QCSEQSWMEVQLQG--------------------------KSMEVVHHGIGYHMAQNMLM 298 + V L G +S V + G H N L Sbjct: 267 EIGLTDEDTVLLMGDVFADDVEVGNTSTFSLNFNFEIDEIESQNVSLNFAGEHNISNALA 326 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +D K L P +GR + G TLID++YNANP+++ AA Sbjct: 327 AAACAQALGLSIDDIAKGLDAAKPAKGR----LNFIEFGKHTLIDDTYNANPSAVLAATQ 382 Query: 359 VL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VL SQ +P + VLGD+ E+G+ +Q H L E ++ ++ ++ G Sbjct: 383 VLVSQGAP-----TMLVLGDIGELGDAAQEEHRKLGEAIAASGVTVLYTVG 428 >gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 219/452 (48%), Gaps = 33/452 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I F + + DGH ++ A+ GA + D +I SI V Sbjct: 25 ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +L ++ ++AITGS GKTTTK+M L++ + ++NN Sbjct: 83 PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ FL+ L P +AVIT I AH+ F + I Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G + +N D+ LL K+ + + + +FG N D +R Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256 Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S+ +W EV + + IG + N L L + +I VD KAL+ Sbjct: 257 SDATKTSFKVATWPEV-------DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + ++ + YN+NP ++K + Q+ EG+RI VLGDM Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435 E+GE + H DLA+ ++ I V+L G + L + L +H+ + D L L Sbjct: 365 LELGEKAAEMHSDLAQAINPDRIGSVYLCGELMGYLAEKLREKFDETQIHHYQKDDLLTL 424 Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +++ L+ D+V++K+S+ +++ L+ Sbjct: 425 TSDLKNELMPDDIVLLKASHGIHLENVVSELI 456 >gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] Length = 455 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii SDF] gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii] Length = 466 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 212/467 (45%), Gaps = 70/467 (14%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W L QA QG+ +PQ + I DSR +AF A+KG +D H+F+ Sbjct: 14 WIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAAN 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V + A I L V D AL +L R + ++ +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPIDAEIAQLV-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG +H GEI + + +V Sbjct: 129 KEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSH 240 +PH+A I I AHL F G + I AK+EI+ + G + D F ++ AKSH Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH 248 Query: 241 ALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 I SFG ++A+FQL QG S V Sbjct: 249 -----QIMSFGAGGDVFATEIELLPQSANFQLHT-------------PQGSSF-VRLPFA 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYN 347 G H QN + L ++ +K L ++ +G + R + + ID++YN Sbjct: 290 GEHNVQNATAAVAFALALGVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYN 344 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406 ANP SM+AA VL Q + G ++ V+GD+ E+G+ S H DL L+ + H+ Sbjct: 345 ANPTSMRAAAQVLLQQN----GIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAV 400 Query: 407 ----------SGFHVLALK------DALP---RSIHVHYSETMDGLF 434 +G H LK +ALP I H ++M LF Sbjct: 401 GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] Length = 461 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 143/447 (31%), Positives = 208/447 (46%), Gaps = 16/447 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + IS DSR I F A+ G +D HDFI +KG+ V+VN ++ + Sbjct: 27 QLIIKSISTDSRKIDEDCLFIALAGERFDAHDFIADVKEKGSVAVLVNREI-----DVDC 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V D A+ ++A R S A I+A+TGS GKT+ KEM L +T G+ Sbjct: 82 PQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ + F + ELG +H+GEI + ++V+P A++ + AH+ F + Sbjct: 142 NNDIGVPLTLFRLAPEHRFAVIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSL 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK EIF L++ GT +N D + L + +A K +S +NADF + Sbjct: 202 EGIAQAKGEIFTHLKEQGTAIINLDSNDLPLWEHHLNARQTKWSFSLSAQRNADFYPTEI 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + +EV G H N L + A ++ LS K Sbjct: 262 AVKQFITNFTLHTPEGCVEVTLPLPGRHNIANALAASALALSAGATLEDIRLGLSTL--K 319 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMG 382 G+ Y L G L D++YNAN SM A + VLSQ+ G +I V GDM E+G Sbjct: 320 AVPGRLYPVELTTGKMVL-DDTYNANDGSMIAGLQVLSQLP----GYKIFFVAGDMAELG 374 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSL 441 + S+ H D+ I V G H + D H + ++ + L +Q Sbjct: 375 KDSEKCHRDVGRFAHNAGIDSVLTVGEHSHFISDENQGGQHFAFKADLLAQLIPLLQQH- 433 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 D V+VK S S ++N L E F Sbjct: 434 -DVVSVLVKGSRSSAMEDIVNALKECF 459 >gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter propionicus DSM 2379] gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 469 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 174/365 (47%), Gaps = 15/365 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S DSR++A + F ++G +DGHDFI KG V+ + I + V Sbjct: 23 VSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAAVLADQSFDGEI-PPGLTVV 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL LA A R R ++ ITGS GKTTTKEML L G+ NN Sbjct: 82 RVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTKEMLATILEQTGPGLKTAGNLNNL 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P L R+ + + E+GMS GEI L + P ++ PAHL + +E + Sbjct: 142 IGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAAPQTGIVLNACPAHLESMGSVEGV 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK E+ L G +N DD L+ + G++ + +FG +AD + + Sbjct: 202 ARAKGELLLRLPAGGCAIINADDP---LIAGQPSPPGVRRL-TFGLG-DADVRATEITSL 256 Query: 267 --SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 QS++ + L + VV G H N L L + L F P + Sbjct: 257 GIGGQSFL-LHLGEIVLPVVLWSYGRHAVYNALAAAAAAHGLGIAAELIQSGLERFRPYD 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 KR++ + G LID+SYNANPASM+AA++ L ++ G GR LGDM EMG Sbjct: 316 ---KRFQLE-DVGGLVLIDDSYNANPASMEAALTTLGEL--KGGGRAFVALGDMLEMGSN 369 Query: 385 SQSFH 389 H Sbjct: 370 EAELH 374 >gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] Length = 455 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] Length = 457 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 194/385 (50%), Gaps = 17/385 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SI+SR++ P F KG H DGH F+ A++KGA + D+ L +P+ Sbjct: 27 IKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKGAAAALWQQDVPNP--PLHLPIL 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A+ +L+ A R + ITGS GKTT K+M LS K G+YNNH Sbjct: 85 VVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKDMTARLLSLRYKVQKTEGNYNNH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL + D + + E+GMS GEI FLT L RP + +IT I +HL + I Sbjct: 145 LGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLGSRAGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQLRKWKQ 265 A AK EI EGL+ G I + D+ LLK + + G + SFGK ++ + Q Sbjct: 205 AKAKLEIIEGLKDDGMIIYHGDEP---LLKDRLNGYSGPAKVRSFGKGQSNSIYPVRIDQ 261 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S + L ME +G H N L + L + + + Sbjct: 262 EEKGSVFQANLS--DMEYHLPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFASL----- 314 Query: 326 RGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R L++G +I+++YNA+P SM+AAI ++S++S G ++ VL DM E+G+ Sbjct: 315 KLTAMRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSELS--GYSIKVLVLADMLELGD 372 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 FH ++ + + I +V G Sbjct: 373 DEVRFHREIGQAIDPEKIDYVLTFG 397 >gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 456 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYTALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. RCC307] gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. RCC307] Length = 464 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 211/446 (47%), Gaps = 32/446 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS DSR++ P + F ++G +DGHDF+ AV G ++ D + + VD Sbjct: 37 ISTDSRALQPGDLFIPLRGERFDGHDFLDAAVSVGVAGALIARDWAGYVPE-QLATVVVD 95 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A ++A+A R + ++A+TGS GKTTT+E++ LS + + +G+ NN IGV Sbjct: 96 DTLSAYQQIALAWRRQLHCPVVAVTGSAGKTTTRELIKACLSPLGAIESSVGNENNDIGV 155 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ R + E+GM LGEI L+ P +AVIT I AH+ IA A Sbjct: 156 PRTMLRSNSSHAGLVLEMGMRGLGEIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQA 215 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCS 267 K EI + L+ +G + + D E + ++S + A D L Sbjct: 216 KCEITDRLKPSGLLVIPAGDPLLE--------AEVSRVWSGRVQRVALSDDPLEPGTPAP 267 Query: 268 EQSWMEVQLQGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + W+ QLQG+S+E+ G+ G H A+N L+ L L + ++ LSV Sbjct: 268 D--WV-AQLQGQSIELASQGLKLINPLEGRHNARNFLLALAAAQELGVTAEQ-LRDLSVS 323 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P GR +R R ++DE+YNA+P +M A++ +L Q G R AV+G M E Sbjct: 324 LPG-GRARRLRI----NGVNILDETYNASPEAMLASLELLKQ---QPGGHRYAVVGTMLE 375 Query: 381 MGELSQSFHIDLAEVLSLYNISH--VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 +G+ S S H + E + + V SG AL + + + ++ Sbjct: 376 LGDQSLSLHRQVGEKATALGLDGLVVVASGPEASALMQGAAGLSKLVCVASPEAAAEPLK 435 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 L GD V++K+S RLI LL Sbjct: 436 QLLRPGDHVLLKASRGIALERLIPLL 461 >gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 415 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] Length = 450 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 4 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 59 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 60 S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 111 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 231 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 281 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 282 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 339 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 396 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ + + + L I+ +L D +++K SNS G + ++ L Sbjct: 397 NQKYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 446 >gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 455 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 22/434 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR I P + F A++G +DGHDF+ A+ GA +V+ D + + VD Sbjct: 32 LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A ++A R R +I ITGSVGKTTTKE++ L+ +YNN IGV Sbjct: 92 NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKTEANYNNEIGV 151 Query: 150 PLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T+ ++ D + + E+GM G+I L + +P+IAVIT + AH+ + IA Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ L TG LN D+ L A + L + ++G +N D Q Q + Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V+ Q + + G H A N L L I L D + A + LSV P +GR + Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R + + L+DE+YNA SM AA+ +L+ RRIAVLG M E+G+ S+++ Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGTMKELGDFSETY 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E + + + + A A +I + L ++ S+ GD + Sbjct: 372 HRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSELRQSVQTGDRL 431 Query: 448 VVKSSNSCGFYRLI 461 + K+S S R++ Sbjct: 432 LFKASRSVALDRIL 445 >gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] Length = 470 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 213/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + +G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNIIGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 458 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 150/446 (33%), Positives = 219/446 (49%), Gaps = 25/446 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SI 83 F I +DSR I + F A+ G + DGHDFIL A +GA +V++ I L I Sbjct: 28 FSGLIRVDSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWGEKIRDLPEGI 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGS 142 V V D L K+A RL+ +IA+TGSVGKT+T+EM+ +AL S Y S Sbjct: 88 RVIEVADPEQGLIKIA-RHRLKGLKNVIAVTGSVGKTSTREMIFLALGGSSSGVYRARSS 146 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N IG LT+A MP D I E+G +H GEI + L AVIT IAPAHL Sbjct: 147 HNTRIGCALTVAEMPEDTSVLILEMGTNHPGEISEMVDLYPVDTAVITEIAPAHLEGLGS 206 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQ 259 +E + AK EI E IF + +K +S + + S G S + D + Sbjct: 207 LEGVLDAKLEILESPNLRKVIFNGDNPMLSSAVKERSFGKNWQAL-SVGSSGSYVLEDIR 265 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 L +W++ S + + QG+S + + G H A + + L + A LS Sbjct: 266 L-EWQERPVLSMIIGEKQGRSSYGIKAKLTGIHNASLLGIAWATAVELGISPEEASIRLS 324 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GRG ++G ++DESYNANP SM+A + +++Q SP +R+ +LG+M Sbjct: 325 SIKPYHGRG----VLKDRGGILVLDESYNANPKSMEALLDLVAQ-SPFPREKRLLILGEM 379 Query: 379 CEMGELSQSFHID-LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 E+GE S S H + L + L L V+L G ++LK V E ++ L + Sbjct: 380 GELGEGSLSLHEEILKKALPL---GTVFLFGSMWISLKPP------VKVYEDIESLSSDL 430 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 +S L G + +K S + G RL+ + Sbjct: 431 KSLLSKGYFIAIKGSRTNGLERLMEI 456 >gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 447 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 186/373 (49%), Gaps = 34/373 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV--D 89 +DSR F A G H DGH + A Q GA V +GS P+ V + Sbjct: 31 LDSRRAQQGSLFLAFAGEHVDGHAYAEQAGQAGAAAV---------LGSRPTPLPTVVAE 81 Query: 90 DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LAV RLR + T+ +TGS GKT+TK++L LSS +T A GS+NN + Sbjct: 82 DTQAALQALAVHVVGRLRDRLTVFGVTGSQGKTSTKDLLAAVLSSAGQTIATFGSFNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F E+G HLG+I LT LV P IAV+ + AHL F E IA Sbjct: 142 GVPLTMLRTEATTRFLALEMGARHLGDISELTGLVAPDIAVVLNVGQAHLGEFGSREAIA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262 AK E+ +GL GT LN DD ++ +L + + +FG++++AD + L + Sbjct: 202 KAKGELVQGLAPGGTAVLNADDPRVAAMR----SLTDRPVLTFGRTEHADVRALGLALDR 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S ++ S V +G H A N + + +DTA L+ Sbjct: 258 LGRPS----FTLRTADASAPVSLPHVGAHQALNASAAVAAGLVAGVPLDTAAAMLATASL 313 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEM 381 R + A L+++SYNANP S +AA+ L+ I EGRR IAVLG+M E+ Sbjct: 314 SRWRMEPRDLASGA---ILLNDSYNANPDSTRAALDALAAI----EGRRHIAVLGEMLEL 366 Query: 382 GELSQSFHIDLAE 394 G+ S+ +H + E Sbjct: 367 GDDSEVWHRAVGE 379 >gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1] Length = 456 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPLGKVHYFIKNDQKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 452 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 193/378 (51%), Gaps = 18/378 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T G++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H G I + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGAIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRY 330 +Q S++V+ G H N L +S+ AIKA L+ GR Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAA-ALSMAVGATLAAIKAGLAALKAVPGRLFPI 320 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 321 QLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHL 373 Query: 391 DLAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 374 QVGEAAKAAGIDRVLSTG 391 >gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 444 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 229/465 (49%), Gaps = 25/465 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T DLL A G + + F SID+R+I + FFA+KG DGH+F+ A+ K Sbjct: 1 MFTLDDLLIATGGKLVSKGNEIFKEA-SIDTRTIGKNDLFFALKGSKKDGHEFVDEALIK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 +G VV + + + V VDD L +L LA R + K IIA+ GS GKTTTK Sbjct: 60 ASGAVVSKNE---GMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ LS K G++NN+IGVPL ++R+ + + + ELG + G+I+ L +V Sbjct: 117 ELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKELCDIVY 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A+IT I H+ F I+ + + EI L T+F N DD F L+ G Sbjct: 177 PDYALITNIGYEHIEGFGSIQGVREGELEI---LPYVKTVFANGDDKF--LMDGLKRYSG 231 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG SK DF+ ++ + + V +G + N+ + + Sbjct: 232 --QILTFGMSKECDFRAENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNLTGAIAVA 289 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + L + + F + RG+ + + FF ++YNANP+SMK A L ++ Sbjct: 290 TFLGISKCSIQQITESFTSVKMRGEIIKINGVEIFF----DAYNANPSSMKVA---LQEL 342 Query: 364 SPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRS 421 + +GRR +AVLGDM E+GE + H ++ + ++ I + + F +K+AL Sbjct: 343 TRRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVGKF----IKNALRYV 398 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +++ + F++ L ++V++K S + +++ +L E Sbjct: 399 NGYVFNDPIQAA-EFLKKELKGSEIVLIKGSRAMKLEKILEILKE 442 >gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] Length = 457 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 141/478 (29%), Positives = 224/478 (46%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q ++ + + + P + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ VA+ P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 A-VVTLSEKKVANQ-----PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + G++ L DS E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-RPGSLLLAPADSIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QTLDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIRQAFQNLDLTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELSQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + +GL +++SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTADEDQFEGLVKQVKASLGTNDQILLKGSNSMNLAKLVESLENE 455 >gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] Length = 470 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 38/470 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ + + + DSR I F + G DGH+FI A+ GA Sbjct: 24 TIQEIAQAVGSECSALTK---ITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGA 79 Query: 66 GLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AS SL + PV V D L A+ +LA + A ++AITGS G Sbjct: 80 S---------ASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNG 130 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L Sbjct: 131 KTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P A IT I AH+ N E IA AK EI +GL G + + D+ L A Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ +FG N D + Q+ + ++G++ + G Y++ N L+ Sbjct: 251 L----VQTVTTFGIG-NGDVHAEVTAKGKAQT--DFVVEGETFTIPLPG-SYNVT-NALI 301 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L+ + R + A N ++ + YNANP +M + Sbjct: 302 AYTIGRFFGLSIPEIRQGLAHVSITQNR-TEWLTAGNGA--AILSDVYNANPTAMGLVLD 358 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L Sbjct: 359 TFKNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEEL 416 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 P+ + + + L I+ +L D +++K SNS G + ++ L Sbjct: 417 NQKYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQL 466 >gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178 T KEM L ++ G+ NN +G+PL+L +PV+ F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A+ Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297 + G + I ++G+++NA + + E + + V +G H N L Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L+ + P KR + LID++YNANP+SM AA+ Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLQPFIAGLKLIDDTYNANPSSMLAAL 378 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + + + R +AVLGDM E+GE S + H Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408 >gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] Length = 434 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 197/405 (48%), Gaps = 39/405 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I FFA+KG +DG+ + A+QKGA VV+ VA+ + + Sbjct: 18 VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDPTVANGDRFLL----FE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL LA R ++A+TGS GKTTTKE++ LS TYA G+ NNHIGV Sbjct: 74 DGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNNHIGV 133 Query: 150 PLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 PLT+ + P + + E+G +H EI L+ + +P +IT I AHL F G+ I Sbjct: 134 PLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNIGKAHLEGFGGVSGIIK 193 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+F+ L +K GT+F+N + +K A G Y CS Sbjct: 194 GKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFY-----------------CS 236 Query: 268 EQSWMEVQLQGKSMEVVH---------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 E S + L ++ VV H G + N+ L + + A +A++ Sbjct: 237 ENSPINPTLIEENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADAYEAVA 296 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + + +G T+I ++YNANP+SM AA++ ++ R+I +LGDM Sbjct: 297 TYEPDNNRSQ----IVKKGTNTVIMDAYNANPSSMAAAVANFGRME---AARKILILGDM 349 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 E+G+ + H+ L + ++ V L+G + ALP++ + Sbjct: 350 FELGDAAPEEHLALGKQIAGEKFDVVILAGKLMQHALPALPKAYY 394 >gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] Length = 457 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 216/467 (46%), Gaps = 38/467 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L A++G + G+ D+R F A++GP +D H+ + A Sbjct: 5 TGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV-------A 57 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +V + + P V D AL +LA R RS+A +IA+TGS GKTTTKEM Sbjct: 58 ADLPAAVLLVERVLDVPHPQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKTTTKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L + +A G+ NN IGVPLTL MP D D+ + E+G +H GEI + P Sbjct: 118 LRCILEGVGSVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMARWTEPM 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSF--FELLKAKSHAL 242 +A+IT AHL F +E +A AKAEIF GL + GT +N DD F + L + H Sbjct: 178 VAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLNEHHHC 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ G+ + W Q ++ + + G+ + + G H+A N + Sbjct: 238 QRFSLEGGGEIEGV------W-QAPDRLRLTILGAGRDLRLAS--PGRHVAANAIAAAAA 288 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + +D L+ + P +GR + + L D++YNANP S++A + VL+ Sbjct: 289 ANAVGVAIDAIANGLAGWTPVQGRLQEL---WHVSGARLWDDTYNANPDSLRAGLEVLAA 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + GRRI VLG M E+G + H + + + + LAL +A S Sbjct: 346 MP----GRRILVLGAMGELGAETPVLHRETGALARAMGVD-------YCLALGEAARDSA 394 Query: 423 HV-----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + D L +++ L D V++K S S R+I L Sbjct: 395 EAFGEGGEWFADHDALRTRLEALLEDETTVLIKGSRSQHMERIIEGL 441 >gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] Length = 489 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 150/489 (30%), Positives = 223/489 (45%), Gaps = 39/489 (7%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M P+ T ++ +A+ G + VP+G V + +S DSR + F AI+G DGHD Sbjct: 2 MMPM-TIGEVAEAVAGRLVEGANGVPEGAVALHAVS-DSRQVENGSVFVAIQGERVDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TI 110 ++ +GA +V+ ++ + ++P VD+ + AL LA A R +A TI Sbjct: 60 YVASVADQGAVAAIVDHEVPGA----AVPQIVVDNTVTALGDLAKANIARRRASGEPFTI 115 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I ITGSVGKTTTK++ LS++ T A +GS+NN IG+PLT + + + E+G + Sbjct: 116 IGITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNNEIGLPLTALTVGEHTRYFVAEMGAN 175 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 H+GEI LT + P IAV+ + AHL F +E IA AK EI GL G LN DD Sbjct: 176 HVGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPNGIAMLNTDDE 235 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGKSMEVVHH 286 E + A A G + +S L ++ S+ V G+ +V Sbjct: 236 HVEAMSAV--APGEVLRFGIDESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVALA 293 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + L ++ + L H R FTLID+S Sbjct: 294 IPGAHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDDS 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NANP SM A + L++ S G R+AVLG M E+G + H + + + I V Sbjct: 354 FNANPDSMHAGLDGLARWS-EGAQYRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEVV 412 Query: 406 LSGFHVLALKDALPRSIH--------------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 G DAL + H + D + + I +G VV++K Sbjct: 413 AVGSPTDQALDALAGELAQGAKNADGAMAVEWAHSAAQADDMIVRIAREH-EGTVVLLKG 471 Query: 452 SNSCGFYRL 460 S++ G L Sbjct: 472 SHASGLSTL 480 >gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 463 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 209/447 (46%), Gaps = 29/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELSGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F +IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + D L + + FG + D + + S Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I AL G Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440 L + L+ NI + G H+ L + + VHY + + + ++Q+ Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNI 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D +++K S+S +L++ L+ + Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455 >gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] Length = 455 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] Length = 471 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 139/438 (31%), Positives = 204/438 (46%), Gaps = 32/438 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR P F A G DGHDF V GA V+ + + +P V+DV Sbjct: 34 DSREAVPGSLFVAFVGERVDGHDFAAAVVAAGAVAVLASR-------PVGVPAIVVEDVQ 86 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL LA R AT++A+TGS GKT+TK+++ L + T GS NN IG+PLT Sbjct: 87 AALGALARHVVNRLGATLVALTGSAGKTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLT 146 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 D F + E+G +G IR+LT L P + V+ + AH+ F G E+IA AK E Sbjct: 147 ALSATEDTRFLVLEMGARGIGHIRYLTELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGE 206 Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268 + E L E G LN DD + +++ A + FG+S AD + + S Sbjct: 207 LVESLPAAEDGGAAILNADDPLVRAMASRTKA----KVILFGESDEADVRAENVRLTDSG 262 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q + + +V G H N L + L ALS + G Sbjct: 263 QPSFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALS----EAGSLS 318 Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELS 385 R+R + + T+++++YNANP SM+AA+ L + G+GRR AVLG M E+G+ + Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALVAM---GKGRRTWAVLGKMAELGDEA 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + H + + N+S + G + A + VH S+ + L ++S Sbjct: 376 LAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAIDL-LRS 434 Query: 440 SLVDGDVVVVKSSNSCGF 457 L GDVV+VK+S S G Sbjct: 435 ELRPGDVVLVKASRSVGL 452 >gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 454 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 209/447 (46%), Gaps = 35/447 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVF 86 I DSR I + F +KG DGHDFI A + GA VA+ + P Sbjct: 29 IEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGA---------VATFSERKVEGHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA + + +IA+TGS GKTTTK+M+ LS+ KTY G+YNN Sbjct: 79 LVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +PHI V+T I AHL F ++I Sbjct: 139 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSRDKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I + DS + + + + FG A+ + ++ Sbjct: 199 AKGKLQIVDGMDSDG-ILIAPADSIVDPYLPEG-----QMVIRFGDG--AEISVNDLQES 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + + G + A N ++ + +L D ++AL R Sbjct: 251 KDSLTFTTNVINRPITLPVP--GKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S+I + G++IAVL DM E+GE S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMRLILETFSKIPANSGGKKIAVLADMKELGEQSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFI 437 H + LS + + G + L + V+Y + D + + Sbjct: 366 ELHKRMIMSLSPDVLDTLIFYGEDIAELAQLASQMFPLGKVYYFKKTADEDQFDDMLKTV 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 Q+ L D +++K SNS +++ L Sbjct: 426 QTVLQPADQILLKGSNSMHLAKVVEAL 452 >gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178 T KEM L ++ G+ NN +G+PL+L +PV+ F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A+ Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297 + G + I ++G+++NA + + E + + V +G H N L Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L+ + P KR + LID++YNANP+SM AA+ Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLQPFIAGLKLIDDTYNANPSSMLAAL 378 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + + + R +AVLGDM E+GE S + H Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408 >gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] Length = 454 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 212/453 (46%), Gaps = 50/453 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I D+R + P E F A++G +DGH+F+ A+ KGA +V+ + PV V Sbjct: 33 IQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAIAAIVDYAYENPV----FPVLQVT 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A ++ R +I +TGSVGKTTTKE++ L++ + + G++NN IGV Sbjct: 89 DTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTTKELIAAVLATKGQVHKTYGNFNNEIGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + DF + E+ M G+I LT + RP I VIT + AH+ S E IA A Sbjct: 149 PKTLLELGAEHDFAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLSSEEAIAEA 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+ + LNYD + AK G Y F D Q + Sbjct: 209 KCELLAEMPNDSVAILNYDSPLL-METAKKFWQGKVISYGF---SGGDIQGK-------- 256 Query: 270 SWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + +++EV G+ G H A N L L + +L D + + V P Sbjct: 257 -----LIDNETVEVAGIGLPLPLPGRHNATNFLAALAVAKVLEIDWQSLQAGVIVNMPN- 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR +R+ + ++DE+YNA P +M AA+ +L+ I R+IAVLG M E+GE Sbjct: 311 GRSQRFTLPND---VIILDETYNAAPEAMLAALQLLADIPGK---RKIAVLGVMKELGER 364 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---------LPRSIHVHYSETMDGLFL 435 SQ H + E++ ++ KDA +P +++ + L Sbjct: 365 SQQLHQQVGEMVQ----KLNLDGLLLLVDSKDAEFIANSAKGIPCECFATHADLIARLKT 420 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 F+Q+ GD ++ K+++S G R++N L E Sbjct: 421 FMQA----GDRLLFKAAHSVGLDRVVNQLRLEL 449 >gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] Length = 476 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 212/449 (47%), Gaps = 39/449 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85 IS+DSR+++ + F I G D H FI A+ G G V V T I + + Sbjct: 29 ISLDSRNMSGLDLFVPIVGEKVDAHRFICQAI--GNGAVAVFTSAHRDISQVEKAIADWE 86 Query: 86 --------------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 V+D AL L R R ++ ITGSVGKTTT+EM+ ALS Sbjct: 87 SRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTREMIAAALS 146 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + Y G+ N+ +GVP+T++ +P + + + ELGMS GE+ + + AV+T Sbjct: 147 AGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVIELGMSEPGEMEKIARVACVDSAVVTN 206 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 I AH+ E I K I +G+ G +F+N DD ++A+ G + I +G Sbjct: 207 IGIAHIEQLGSQENILREKLHIQDGMNPEGILFVNGDDPLLADIQAE----GGRRIIRYG 262 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 S +++ + E + + G K V +G HM N + L + + D+ Sbjct: 263 MSAGCEYRAEDVR-LDEGYPVFTAVHGEKRTPVRLQVMGTHMVGNAMAALAVAAEYGVDM 321 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGE 368 + A + L F +GR + + GF T+ID+SYNA+P SMKA + VLS + P Sbjct: 322 EEAARKLGEFGGYKGRQQIH------GFQGMTIIDDSYNASPVSMKAGLEVLSSMKPG-- 373 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH--- 425 R+IAVL DM E+G + FH ++ ++ + + V L G A+ + L + Sbjct: 374 ARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGELAAAIGEGLREAGGQSPFL 433 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 +++ + +++ GD ++ K SNS Sbjct: 434 LCGSLEQVKEWLKRETKSGDCILFKGSNS 462 >gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 456 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 131/470 (27%), Positives = 221/470 (47%), Gaps = 32/470 (6%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ ++ + + P + DSR I + FF +KG DGH FI+ A + G Sbjct: 4 TFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ P VD+VL AL +LA + K + A+TGS GKTTTK+ Sbjct: 63 AAATLSEKELD------DYPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + +P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + ++T I AHL F EIA K +I +G++ + + D + L ++ + Sbjct: 177 KVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGMKDGTLLVVPADKIINDFLPSQLN---- 232 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG + D L K ++ + E ++++ G + A N ++ + Sbjct: 233 --VVRFGPDE--DIFLTKLEERKDSLSFETNFLDNAIDL--PVTGKYNATNAMIAAYVAL 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D KA + R + ++ A N ++ + YNANP +M+ + S I Sbjct: 287 KEGVTQDKIQKAFATLELTRNRTE-WKKAKNGA--DILSDVYNANPTAMRLILETFSTIP 343 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPR 420 + +GR++AVL DM E+G S+ H + L+ +S ++L G + AL K+ P Sbjct: 344 FNEKGRKLAVLADMKELGVDSKQMHSAMITSLNPEILSEIFLYGEDMAALFAYAKEIFPP 403 Query: 421 SIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 HY + L ++ +L D +++K SNS L+ L Sbjct: 404 G-KAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEKL 452 >gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] Length = 456 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 132/397 (33%), Positives = 198/397 (49%), Gaps = 30/397 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q + + IG Q V I+ D+R FFA+KG H+D H ++ AV++GA Sbjct: 5 TTQQLAQILNANLIGD-GQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVEQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +VV + ++S P V D AL +LA R + I+A+TGS GKTT KEM Sbjct: 64 TALVVQK----ANTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKTTVKEM 119 Query: 126 LTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 L + G++NN IGVPLTL R+ F + ELG +H GEI + THL Sbjct: 120 TASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEIDYTTHL 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P A++ +A AHL F IE +A AK EI+ GL G +N + ++ EL + + Sbjct: 180 AQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTPNGMAIINSEHNYIELWQKE--- 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G I F D++ + S +M V +G S+E+ +G H +N L Sbjct: 237 IGSHAIQYF---NGGDYKAENVEHSPNGSTFMLVSPKG-SIEINLPYLGEHNVKNALAAT 292 Query: 301 GI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V ADV ++ H + +G+ + +N+ L+D++YNAN S++AAI Sbjct: 293 ALAMNVGASLADVKAGLE-----HRSQVKGRLFPIQVNENLL-LLDDTYNANVDSLQAAI 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 VL + RI ++GDM E+GE S H + E Sbjct: 347 DVLKGY----DAFRILLVGDMKELGEDSLKCHQQVGE 379 >gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] Length = 509 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 139/446 (31%), Positives = 221/446 (49%), Gaps = 25/446 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++IDSR+++ + F A+ G DGHD+ A +GA LV+ ++ +P V Sbjct: 71 VTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQGAVLVLSQKNIKG------VPCVVVA 124 Query: 90 DVLGALNKLAVA--ARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D AL LA A ARLR K +I +TGS GKTTTK+++ L++ GS NN Sbjct: 125 DTQRALGDLARAHLARLREKGHIRVIGVTGSAGKTTTKDLMGQMLATYGNVVVPAGSLNN 184 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G+PLT+ + DF + E+G S +G++ +LT + IAV+ + AHL F E Sbjct: 185 ELGLPLTVLKADETTDFLVTEMGASAVGDLHYLTSIAPLDIAVVLIVGLAHLGGFGSAEL 244 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWK 264 +A AK+E+ GL G LN DD +K +H + +FG + AD + + Sbjct: 245 VAQAKSELVTGLLPQGIAVLNADDHRVIAMKELAHG----QVRTFGSVRGADMRAINART 300 Query: 265 QCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++ +V+ G + V +G H N L L V+ L +D A ALS Sbjct: 301 DAAGRAHFDVETTAGDTASVTLTLVGEHHVTNALAALTAVTALGMPLDQAAVALSAARAT 360 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMG 382 R T+ID+SYNANP SM+AA+ L+ ++ G RR +AVLG+M E+G Sbjct: 361 S--PHRMDVVDRPDGVTIIDDSYNANPDSMRAALRALATVA--GRQRRTVAVLGEMRELG 416 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQ 438 S+++H D+ ++ NIS + + G + D + V ++ + Sbjct: 417 PQSRTYHDDIGRLVVRLNISRLIVVGQGAQGIADGALQEGSWGDEVVEVADLNAAHAALN 476 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 L DVV++K+S+ G ++L + L Sbjct: 477 DYLQPNDVVLIKASHGSGLWQLADEL 502 >gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus S110] gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus S110] Length = 471 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 187/385 (48%), Gaps = 17/385 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88 + D+R++A + F A+KG +D ++F+ A +GA + + + A + L +P Sbjct: 28 VHTDTRTLAEGDLFVALKGERFDANEFLADAKARGAVAAIAHGGLEAAGLAGLEVP---- 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNH 146 D L AL L R + +IA+TGS GKTT +M+ L + + + A G++NN Sbjct: 84 -DSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVTQMIAAVLVAFRGDRALATAGNFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + ELGM+H GEI L + RP +A++ HL + +E + Sbjct: 143 IGVPLTLLRLRAKHQHAVVELGMNHPGEIARLAAIARPTVALVNNAQREHLEFMATVEAV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWK 264 A +F + + GT + D F L +H + +FG+ ++AD L +W+ Sbjct: 203 ALENGAVFSFVPEDGTAVFPHGDEFAPLWNDMAHDGATRRCMTFGEHEDADISLVAAEWQ 262 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 Q + Q + L + H G H N L +T + LS F P + Sbjct: 263 QGAWQVRIRTPL--GDFDAQLHIAGRHNVVNALAATACALATGIPPETIARGLSAFEPVK 320 Query: 325 GRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR K L G TL+D+SYNANP S++AAI VL+ + G R+ VLGDM E+G Sbjct: 321 GRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVLAALP----GPRLLVLGDMGEVGN 376 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 + FH ++ + I V+ G Sbjct: 377 RAPEFHAEVGDWARQRGIEAVYALG 401 >gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 455 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 27/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 + ++ DSR I+ F IKG DGHDF+ A++ GA + G+ + P Sbjct: 24 ITSVAFDSRKISQGALFIPIKG-ERDGHDFVGSAIEAGASATLWEA------GNPNKPEG 76 Query: 85 --VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D L A+ LA + T+++ITGS GKTTTK+M+ L+ Y + Sbjct: 77 IAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAKRFNVYKTQAN 136 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVP+T+ M + + E+GM G++ L+ L RP +AVIT I AH+ F Sbjct: 137 FNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGS 196 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 ++IA AK EI + L++ G N D E L A+ A + +FG + + Sbjct: 197 RDKIADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLPQDKSTFGFADSDSIHASD 252 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFH 321 + S+ ++ G E IG H N + + +V + D I A L+ F Sbjct: 253 LRSTMHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFV 309 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + + + I YN+NP ++KA + Q+ +GRRIAVL DM E+ Sbjct: 310 PTANRMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLEL 366 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436 G S H LA L I+ ++L G + L AL +++H + + M L Sbjct: 367 GSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDD 426 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++S + D+V++K S+ R+++ L Sbjct: 427 LKSDIHSQDIVLLKGSHGMHLERVLDRL 454 >gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum CECT 5716] Length = 459 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + G Sbjct: 4 SLAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D P VDD L AL +L + ++A+TGS GKTTTK+ Sbjct: 63 AKATLWAKDHPYDPAD-GYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121 Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 M+ L++ + KTYA ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ LL+ ++ Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L +T +FG+ + D + V + + +G + N L + Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ +AL E R + A + ++ + YN+NP ++K ++ L+ Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408 Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +H + + L +Q+SL GDVV++K+S+ +++ Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454 >gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 481 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 229/478 (47%), Gaps = 39/478 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +T + + G GI PQ ++ G+ DSR ++P + F A +G +G +F A+ Sbjct: 4 FTAQQIADIVGGELYGIDPQTTLSAGVETDSREVSPGDIFVARRGETTNGIEFAPSAIAA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA +V + V ++G ++P V D AL KLA A+ LR T+IAITGS GKT+ Sbjct: 64 GA--AIVIAEAVPTVGDDTLPSCVVTDATVALGKLASASVEALRETMTVIAITGSSGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 K+++++ L+ +T SYNN +GVPLT R + F + E+G +G + +LT L Sbjct: 122 VKDLVSVLLAGEGETVYPPNSYNNEVGVPLTALRAGEETRFLVLEMGARSIGNLAYLTSL 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +RP IAV + AH F I+ A AKAE+ E L++ G LN DD ++ A Sbjct: 182 IRPDIAVELNVGAAHSGVFGSIDNTARAKAELVESLQEPGWAVLNADDPRVRDMQ-NVLA 240 Query: 242 LGIKTIY-SFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQ 294 G+ T++ S G+ D + W + +S + L G+ V +G H Sbjct: 241 QGVNTMWFSEGEPTRPDTTV--WASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHVS 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352 N L + + + + L+ G R+R L + T+I+++YNANP S Sbjct: 299 NALAAATVAHLCGVTARSIVTTLATA----GAASRWRMELVDSPNGVTVINDAYNANPDS 354 Query: 353 MKAAISVLSQISPHGEG-------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 M+AA+ L+++ G G R +AVLG+M E+G+ S H + ++ NIS Sbjct: 355 MRAALITLAEM---GRGDDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTI 411 Query: 406 LSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 G + L+ + + E + +QS L GD+V+ KSS G Sbjct: 412 AVGEGARPIYQAANLEGSWGN--EAAWVENISEARDLLQSELQPGDIVLFKSSRDAGL 467 >gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella longbeachae NSW150] gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella longbeachae NSW150] Length = 441 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 137/445 (30%), Positives = 210/445 (47%), Gaps = 29/445 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI IDSR + F AI+G +DGHDFI A +GA VV+ + + IP F Sbjct: 20 LTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSH----RVEGVHIPQF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + AL K+A A R +IA+TGS GKTTTKEM+ L S +++ G+ NNH Sbjct: 76 VVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPS--PSHSTKGNLNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG PL++ ++ + +FELG +H GEI +V P + +I IAPAH+ F I+ + Sbjct: 134 IGAPLSVFQLNSQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSIDGV 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI +GL GT +N DD++ L K + F AD + + Sbjct: 194 ARAKGEIHQGLSSAGTAIVNDDDAYAHFW---DELLLDKKVLRFSIEHPADVYAQDVQLD 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ + +H + G H +N L + + L++F +G Sbjct: 251 SQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGLSAKEIQQGLNLFSGVKG 310 Query: 326 R-----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 R GK NQ T+ID++YNAN S+ A+ VL++ G++I V GDM E Sbjct: 311 RLTVLTGK------NQS--TVIDDTYNANLRSVLVALEVLAE----HPGKKIFVFGDMGE 358 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G + H ++ I + G +A + Y + + L + + Sbjct: 359 LGVWATQHHQEVGIAARRLGIDQLLCCGSKSRLAAEAF--GVGGEYFTSQEQLVQNLVAK 416 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 L VV+VK S S ++++ L+ Sbjct: 417 LSADTVVLVKGSRSSAMEKIVHQLV 441 >gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] Length = 454 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 27/365 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL KLA A R + ITGS GKTT KEML L + A G+ Sbjct: 81 --VDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + P++A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQL 260 G+ +IA AK+EI+EGL G + +D+ +A + L I+T + G + +L Sbjct: 199 GVGDIAKAKSEIYEGLLSDGVALIPCEDANIATFEAATVQLNIQTFGIASGDVHAENIEL 258 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + C+ ++ + + VV G H N + + + L F Sbjct: 259 KPL-SCT----FDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNF 313 Query: 321 HPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 +G R + QG TLID++YNANP SMKAAI VL+ + RI V+GDM Sbjct: 314 SNIKG-----RLNIKQGIKGATLIDDTYNANPDSMKAAIDVLAAMP----APRIFVMGDM 364 Query: 379 CEMGE 383 E+GE Sbjct: 365 GELGE 369 >gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] Length = 427 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 196/393 (49%), Gaps = 36/393 (9%) Query: 26 FVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLS 82 FV+ SI D+R I FFA+KG ++DG+ + A++KGA V+ N D+ L Sbjct: 11 FVDSSSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRKIL- 69 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V +VL L LA R + K I+AITGS GKTTTK++++ LS K A G+ Sbjct: 70 -----VKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGN 124 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NNHIGVPLTL ++D GI E+G +H EI L + P+ IT AHL F G Sbjct: 125 LNNHIGVPLTLLSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYITNFGKAHLEGFGG 184 Query: 203 IEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E + K+E+++ L G IF N DD ++ KA ++ YS G+ +D ++ Sbjct: 185 VEGVIKGKSELYDYLIHHDGLIFFNRDDD-IQVKKAVNYK-----NYSIGEKPLSDCRV- 237 Query: 262 KWKQCSEQSWME----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++M+ V+L+ +++ IG + +N+ +G+ D +A+ Sbjct: 238 --------TFMDANPFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKDEIKEAI 289 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +E R + + + ++ ++YNANP SMKAA+ ++S + +LGD Sbjct: 290 ENFEAEEMRSQ----VIEKNDLKILLDAYNANPTSMKAALESFKKMSSQSQ---TVILGD 342 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 M E+GE + H + + N + G H Sbjct: 343 MFEIGETTLEEHRQILKTCETLNFDSILACGEH 375 >gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Shewanella amazonensis SB2B] gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella amazonensis SB2B] Length = 455 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 210/442 (47%), Gaps = 24/442 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + DSR + F A+KG +DGH+F A GA ++V ++ L++P Sbjct: 24 VSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVEREL-----PLALPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A+ ++ R +A+TGS GKT+ KEM+ LS G++NN Sbjct: 79 VVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVLFTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ ++G+FELG +H GEI + + LVRP ++++ + AHL F + Sbjct: 139 IGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSSLVRPSVSLVNNVGSAHLEGFGSEAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK+EI+ L + G +N DD + E + K L K + +FG A+ R+ Sbjct: 199 AEAKSEIYLHLAQDGVGIVNLDDRYAETMLNK---LKGKRVLTFGLGAGAEITAREVTAD 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + G V + G H N L T I L + L+ P +G Sbjct: 256 AFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIALGLPLQEIAAGLAKLAPVKG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + G L+D+SYNANP S+ AAI L +IS + R VLGD+ E+G+ + Sbjct: 316 RMMPRQL----GRLLLVDDSYNANPNSVGAAIDWLKEISTN----RTLVLGDLGELGDNA 367 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVD 443 H +L + + ++ G +L ++ + E +D L L + V+ Sbjct: 368 ALLHFELGQKAKEAGLDSLFCLG----SLSRHASQAFGSKHFEELDALVSELINYINGVE 423 Query: 444 GDV-VVVKSSNSCGFYRLINLL 464 GDV ++VK S S R++ L Sbjct: 424 GDVTLLVKGSRSAAMERVVEAL 445 >gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 452 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 145 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271 I+ GL + G +N D++ + L +S +G + ++ F + N+DF S + Sbjct: 205 IYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANIHVTSHGTE 261 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +Q S++V+ G H N L + + A + L+ GR + Sbjct: 262 FTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G S++ H+ Sbjct: 322 LSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQ 374 Query: 392 LAEVLSLYNISHVWLSG 408 + E I V +G Sbjct: 375 VGEAAKAAGIDRVLSTG 391 >gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 456 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 191/383 (49%), Gaps = 37/383 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGS 80 Q V I+ D+R FFA+KG H+D H ++ AV++GA +VV NT+ Sbjct: 22 QAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVEQGAAALVVQQANTE------- 74 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 ++ P V D AL +LA R + +A+TGS GKTT KEM L + Sbjct: 75 IATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKTTVKEMTASILQQTAGNPEAV 134 Query: 141 ----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 G++NN IGVPLTL R+ F + ELG +H GEI + THL +P A++ +A AH Sbjct: 135 LFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEIDYTTHLAQPEAALVNNVAAAH 194 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSK 254 L F IE +A AK EI+ GL + G +N + ++ EL + + SHA+ Y G+ Sbjct: 195 LEGFGSIEGVARAKGEIYRGLTQNGVAIINSEHNYIELWQKEIGSHAIQ----YFNGR-- 248 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVD 311 D++ K S + S+E+ +G H +N L + V ADV Sbjct: 249 --DYKAENVKHSPNGSTFTLVSPKGSIEINLPYLGEHNVKNALAATALAMNVGASLADVK 306 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 ++ H + +G+ + +N+ L+D++YNAN S++AAI VL + R Sbjct: 307 AGLE-----HRSQVKGRLFPIQVNENLL-LLDDTYNANVDSLQAAIDVLKGY----DAFR 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394 I ++GDM E+GE S H + E Sbjct: 357 ILLVGDMKELGEDSLKCHQQVGE 379 >gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 461 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 27/413 (6%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ + + +S+ + +N I DSR+I + F ++G DGHDFI A + G Sbjct: 4 TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VA+ +I P V++ L A KLA + + +IA+TGS GKT+ Sbjct: 63 A---------VATFSERAISGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTS 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ L+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I+ L+ + Sbjct: 114 TKDMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRI 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RPHIAV+T I AHL+ F E+IA K +I +G++ G I + D + S Sbjct: 174 ARPHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + FG + + + K+C + + + + + G + A N ++ Sbjct: 231 ---QMVIRFGDHQ--ELVVEDIKECKDSLTFRTNVLPRPVTIPL--TGKYNATNAMIAAY 283 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L + I+AL R + + A L+ + YNANP +M+ + + Sbjct: 284 VGKLLAVPDEDIIEALEAVKLTRHRTEWLKAA---NGADLLADVYNANPTAMRLILETFA 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 I + G++IAVL DM E+G S + H + L I + G + AL Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRIDQLVFYGDDIQAL 393 >gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] Length = 478 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 213/450 (47%), Gaps = 31/450 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV- 88 + IDSR + F A G DG+ +I A+ GA +V + + + + V Sbjct: 29 VEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDATL 88 Query: 89 -----DDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 DD L +LA A R L T++A+TGSVGKTTTK+ML +++ ++ +A G+ Sbjct: 89 LRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDMLRAGIATQRRVHATAGN 148 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IG+P+T+ P D + + E GM+H GEI LT RP IAVIT + +H+ Sbjct: 149 HNNLIGLPMTILSAPKDAEVLVCECGMNHKGEILRLTRCCRPTIAVITNVGTSHIGLLGS 208 Query: 203 IEEIASAKAEIFEGLEKTG----TIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNAD 257 E IA AKAEI EG+E G T+ L F + K + GI + S D Sbjct: 209 RENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFARPKGIDVVCV--GSHAGD 266 Query: 258 FQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + E+S V G V G + LM L +++L D D A+ Sbjct: 267 ILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMALEAITLLGLDRDMAL 326 Query: 315 KALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 A++ P R R ++ +ID+SYNA+P+SM AA+ VLS++ GRRI Sbjct: 327 DAIATMPP-----TRMRLSVLHAVCGARIIDDSYNASPSSMAAALDVLSRMPTR--GRRI 379 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYS 427 A+LG++ E+G+ + H + ++ I V G +++ + Sbjct: 380 AILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDAAREMAEAAKTMGLSEDAIELV 439 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 E+++ + I L D D V+VK+S + G Sbjct: 440 ESVEDVMKIIPPILKDTDTVLVKASRAAGL 469 >gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1057] Length = 456 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 213/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I P + F +KG DGHDFI A GA + +D + G P VDDVL Sbjct: 32 DSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGAAATL--SDHPVAEG----PYLLVDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADYK------LVRFG--PDADIFLTCLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + K +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 DCNFLEKRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] Length = 455 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 22/434 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR I P + F A++G +DGHDF+ A+ GA +V+ D + + VD Sbjct: 32 LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A ++A R R +I ITGSVGKTTTKE++ L+ +YNN IGV Sbjct: 92 NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKPEANYNNEIGV 151 Query: 150 PLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T+ ++ D + + E+GM G+I L + +P+IAVIT + AH+ + IA Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ L TG LN D+ L A + L + ++G +N D Q Q + Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V+ Q + + G H A N L L I L D + A + LSV P +GR + Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R + + L+DE+YNA SM AA+ +L+ RRIAVLG M E+G+ S+++ Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQLLADTPGQ---RRIAVLGTMKELGDFSETY 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E + + + + A A +I + L ++ S+ GD + Sbjct: 372 HRQVGEKAAALGLDRLLIYADPTEAAAMQAGASAIATQIFTNAEDLLSELRQSVQTGDRL 431 Query: 448 VVKSSNSCGFYRLI 461 + K+S S R++ Sbjct: 432 LFKASRSVALDRIL 445 >gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] Length = 422 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 203/386 (52%), Gaps = 26/386 (6%) Query: 26 FVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 F+N GIS D+R I FFA+KG +++G+ + A+ +GA VV++ + + Sbjct: 7 FLNSTGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEEQFKKDDRYIL 66 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 VDDVL L +LA R II++TGS GKTTTKE++ L+ KT A +G+ Sbjct: 67 ----VDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNL 122 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIGVPLTL M D + GI E+G +H+GEI L ++ +P IT AHL F Sbjct: 123 NNHIGVPLTLLSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYITNFGKAHLEGFGSE 182 Query: 204 EEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E + K+E+++ L+ I F+N +D+ K G+KT ++FG K +D Sbjct: 183 EGVVIGKSELYKHLKSHDKIVFVNSNDA-----KQVDLTKGMKT-FTFG-LKQSDV---- 231 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 W + + V++ ++ + + IG + + N+ + I ++A+ + P Sbjct: 232 WVSFKNVNPL-VEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDKHIVEAVENYVP 290 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + + + T++ ++YNANP+SMK A+ L ++ + + A+LGDM E+G Sbjct: 291 SNNRSQ----IIKKDNLTILLDAYNANPSSMKVALENLQALN---DTPKYAILGDMFELG 343 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ H+ +A++ + ++ V L G Sbjct: 344 ASAKKEHMSIAKLAASIHLDGVLLVG 369 >gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9] gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9] Length = 452 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 129/398 (32%), Positives = 196/398 (49%), Gaps = 28/398 (7%) Query: 4 LWTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T H++ +A+ QG + G + DSR+I + F A+KG +D HDF+ Sbjct: 1 MLTLHEVAEALFAVRQGDNTGFTR------VVTDSRAIRAGDLFVALKGERFDAHDFVAD 54 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + +GA VV D P+ V D AL +LA R R + ITGS GK Sbjct: 55 VLARGAAGAVVRCDFDLP----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGK 110 Query: 120 TTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TT KEML L+ + A G++NN IG+PLTL + + E+GM+H GE+ Sbjct: 111 TTVKEMLRGMLAQWLGDEAVLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELT 170 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +L+ L RP +A++ AH+ +F +E IA AKAEIF GL G +N DD +L Sbjct: 171 YLSGLARPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGLAADGVAVINRDDPNRDLFV 230 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + + I FG + D + ++ S + + V+ G HM N Sbjct: 231 AAAAG---RRIVEFGLAAG-DVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANA 286 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + S + + + L F GR +R A++ T+ID++YNANP S++AA Sbjct: 287 LAACAVASAMGVPLPAMVAGLQAFAGVPGR-LAFRRAVSG--LTVIDDTYNANPDSVRAA 343 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 I+VL+ S GRR V GD+ E+GE + + H ++ + Sbjct: 344 IAVLAARS----GRRWLVFGDLGELGEGAPALHAEIGQ 377 >gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] Length = 470 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 219/475 (46%), Gaps = 33/475 (6%) Query: 10 LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + A+ G GI P V G ++ DSR + F A+ G DGHD++ + GA V Sbjct: 9 IADAVGGELAGIDPAAVVTGAVAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGA-TV 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 + T V P V D AL +LA V A+L + T+I +TGS GKT+TK+++ Sbjct: 68 SLTTRPVDGC-----PCIVVADTQVALGELARYVVAQL-PELTVIGLTGSQGKTSTKDLI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ++ T A GS+NN IG PLT + D + + E+G HLG+I +L + P + Sbjct: 122 AQLVAPYGPTVAPTGSFNNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYLCRITPPKV 181 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++ + +H+ F + IA AK E+ + GT LN DD + +++ +T Sbjct: 182 GLVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGTAVLNADDPRVAAMASRTE----QT 237 Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN------MLMT 299 I +FG++ AD + + E + + G+S V IG H N + Sbjct: 238 IRTFGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALA 297 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +G+ AD A +S R T+I+++YNANP S++AA+ Sbjct: 298 VGLTPEQVADGLNAAARVSQ--------ARMEVVERPDGVTVINDAYNANPDSVRAALKA 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA 417 L I E R AVLG+M E+G+ S + H + + +++ + G + L + Sbjct: 350 LVAIGRAREARTWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGEGAKPIHLGAS 409 Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 L S Y T+ ++ L GDVV+VKSS + L + LLE PA Sbjct: 410 LEGSWGNESAYVATIAEALELLRGELRSGDVVLVKSSKAANLRSLADALLETAPA 464 >gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 451 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 121/397 (30%), Positives = 209/397 (52%), Gaps = 44/397 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I +GH+++ A+ GA VAS+ S Sbjct: 24 IHGVCIDSKNMKEGNLFVPII-RMKNGHEYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 74 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P +AVIT I +HL Sbjct: 134 KGNFNSQIGLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 193 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---- 255 EEIA AK EI +GL G N D+ LL + L I++ GK N Sbjct: 194 LGSREEIAKAKFEIIDGLNDDGLFLYNGDEP---LLSQNINMLSIESKSFGGKYTNDLFP 250 Query: 256 ADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + QL ++ K + + ++ L GK +++ +G + Q + T + Sbjct: 251 TNVQLDEYGVHFKLNNTKIQYDIPLHGKH-NILNAIVGIAVGQ-------FYKVSTEKIQ 302 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 A++ +++ R++ + FT+I++++NA+P+SMKAAI L +++ + ++ Sbjct: 303 EALQQINITQ------MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KKK 354 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + V+GDM E+G+ +++H ++ ++L+ +I +V+ G Sbjct: 355 MIVIGDMLELGKKGETYHREIGKMLNEKSIQYVFTYG 391 >gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] Length = 442 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 143/454 (31%), Positives = 214/454 (47%), Gaps = 45/454 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ DSR + P F AI+G +DGHDFI A +GA VV ++ ++IP F Sbjct: 20 ITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVKY----AVDGITIPQF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL K+A A R +IA+TGS GKTTTKEM+ L ++A G+ NNH Sbjct: 76 VVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILPV--PSHATKGNLNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG PL++ ++ + +FELG +H GEI +V P + +IT IAPAH+ F I+ + Sbjct: 134 IGAPLSVLQLTSQHRYAVFELGANHPGEISHTVAIVHPDVTLITNIAPAHIEGFGSIDGV 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIK---TIYSFGKSKNADF 258 A AK EI +GL +G +N DD++ L+ K+ I+ +Y+ D Sbjct: 194 ARAKGEIHQGLSTSGIAVVNDDDAYAHFWDDILVDKKTLRFSIEHPAEVYA------QDI 247 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 L + C++ S + L ++ G H +N L + + L+ Sbjct: 248 HLDAYG-CAQFSLI---LPNGRIDTQLQVPGLHNVRNALAAAACCHAVGVAIKDIQHGLN 303 Query: 319 VFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 F +GR GK NQ T+ID++YNAN S+ A+ VL++ G++I Sbjct: 304 NFGGVKGRLMILSGK------NQS--TVIDDTYNANLRSVLVALEVLAE----RPGKKIF 351 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDG 432 V GDM E+G + H ++ I + G F LA H E + Sbjct: 352 VFGDMGELGAWATQHHQEVGLAARRLGIDLLLSCGSFSKLATDSFGAGGEHFTNQELLAQ 411 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L VV+VK S S +++N LL Sbjct: 412 NLI---EKLSPDTVVLVKGSRSSAMEKIVNKLLN 442 >gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] Length = 452 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 136/444 (30%), Positives = 203/444 (45%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN ++ D+R+I P F A++G +D HDF+ A GA +V+ + + ++ Sbjct: 21 VNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVDREQDSFESAVR---- 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L +LA + +A+TG+ GKTT KEM L T A G++NN Sbjct: 77 -VADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMAAAMLGD--GTLATHGNFNND 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL R+ + F + ELG + GEI + + L RP + ++T + AHL F ++ I Sbjct: 134 VGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSLTRPQVVLVTNVTGAHLEGFGSMQGI 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQ 265 A AKAEIF G G +N DDSF + K+ A G+ + S +S L Sbjct: 194 ADAKAEIFGGCTPGGQAIINNDDSFADFFAEKARAAGLTVVRVSMDESTRTGADLYAENI 253 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + E LQ V G H N LM V L ++ + L+ P G Sbjct: 254 ALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMACAAVRALGVNLPQVLPRLAALKPVPG 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 R + A G ++D++YNANP S++AAI L +Q +P + VLG M E+G Sbjct: 314 R-MHIQAA---GAGAVVDDTYNANPGSVRAAIDWLAAQPAPQ-----MLVLGAMGELGPQ 364 Query: 385 SQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + S +L E +S V ++G A I Y + + L Sbjct: 365 ADSLVEELGEYARQAGLSGLVAMTGAAAAARGYGEAAKIAEDYQQAAS----WSAPVLAQ 420 Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467 G V+VK S S G ++ L +E Sbjct: 421 GGTVLVKGSRSAGMEAVVQRLTQE 444 >gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulomonas flavigena DSM 20109] gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulomonas flavigena DSM 20109] Length = 476 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 218/469 (46%), Gaps = 40/469 (8%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V G + DSR + P F A+ G H DGHDF AV ++A+ Sbjct: 22 PGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAGAVAA------GAALVLAARALP 75 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALS 131 +P V DV AL LA A ARLR AT +I +TGSVGKTTTK++L Sbjct: 76 GLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKDVLAQLCG 135 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + T A + S+NN IG+PLT+ R F + E+G S G + +LT + P +AV+ Sbjct: 136 AAGPTVAPVRSFNNEIGLPLTVLRADEQTRFLVLEMGASGPGHLTYLTDIAPPDVAVVLV 195 Query: 192 IAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F GI+ +A AK+EI GL G LN DD + + + F Sbjct: 196 VGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMADVAPGRAVL----F 251 Query: 251 GKSKNADFQLR--KWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGI--- 302 G + +A+ ++ + ++ V + G+ + +V +G H N L Sbjct: 252 GAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHNALAAAAASLQ 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V + +V + A P R T++D+SYNANP SM+AA+ L+ Sbjct: 312 VGLTLDEVAAGLTAADALSP-----HRMHVVDRADGVTVVDDSYNANPDSMRAALKALAV 366 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 I+ E R +AVLG+M E+G+ ++ H + ++ NI + G A++D Sbjct: 367 IAGR-ERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIRDGANHEG 425 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + +D F+ L GDVV+VKSS G +RL + L+E Sbjct: 426 SWGDEVVLVDDVDTAAAFLAQELRAGDVVLVKSSYGAGLWRLGDELVER 474 >gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1058] Length = 456 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 213/444 (47%), Gaps = 31/444 (6%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR I P + F +KG DGHDFI A GA + +D + G P VDD Sbjct: 30 EFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGAAATL--SDHPVAEG----PYLLVDD 82 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 VL A LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P Sbjct: 83 VLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLP 142 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T+ MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K Sbjct: 143 YTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGK 202 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +I +GL K G + + D E L A + FG +AD L ++ + Sbjct: 203 MQIADGLRKDGLLIVPADKIVNEFLPADYK------LVRFG--PDADIFLTCLEERKDSL 254 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + K +++ G Y+ M+ + ++V A +A S R + + Sbjct: 255 SFDCNFLEKRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-W 311 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H Sbjct: 312 KKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHG 369 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSS 440 + L+ ++ ++L G + AL D + I+ VHY + + L ++ Sbjct: 370 SMITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREK 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L D +++K SNS +L+ L Sbjct: 429 LTPADQILLKGSNSMNLAKLVEDL 452 >gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 472 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 205/449 (45%), Gaps = 24/449 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 + IDSR++ F A++G H DGH +I KGA +V S G+ + P Sbjct: 33 VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGF 92 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D + L +LA R +IA+ GS GKTTTKEM+ L + G+ NN Sbjct: 93 LVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVLGTGFTVQTSKGNLNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL ++ + E+G++H GE+ L L RP ++T I HL +E Sbjct: 153 HLGVPLTLLQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHEHLEFLLNLEG 212 Query: 206 IASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A+ + +F L++ GT F+N DD + K A G+ +++G + ++ + Sbjct: 213 VAAEETRLFRYLQQHGGTCFVNADDLWL-----KEAAEGLTGSFTYGTADDSQIACQARH 267 Query: 265 QCSEQSW---MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 ++S E G S + H IG H N L + + ++ K L Sbjct: 268 IAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFGLSLEQIKKGLEALR 327 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P G KR + G LI+++YNAN SM+ AI L I G++IAVLGDM E+ Sbjct: 328 PSPGW-KRLEVQ-DAGGVVLINDTYNANSDSMRLAIDALVDIPC--SGKKIAVLGDMLEL 383 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQ 438 GE H + I ++ G H H HY + +D L + +Q Sbjct: 384 GEAGIVEHEKTGRYIQQSPIDLLFTYGRHARLYGIEAGARCHGHYENRQKLLDELKMVVQ 443 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 GD V+ K+S S ++ L++E Sbjct: 444 P----GDAVLFKASRSMRLELVVEALIKE 468 >gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 459 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + G Sbjct: 4 SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D P VDD L AL +L + ++A+TGS GKTTTK+ Sbjct: 63 AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121 Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 M+ L++ + KTYA ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ LL+ ++ Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L +T +FG+ + D + V + + +G + N L + Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ +AL E R + A + ++ + YN+NP ++K ++ L+ Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408 Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +H + + L +Q+SL GDVV++K+S+ +++ Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454 >gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] Length = 539 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 136/477 (28%), Positives = 225/477 (47%), Gaps = 41/477 (8%) Query: 10 LLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++A G +IG+ Q + + + DSR + F A G DGH FI A ++GA Sbjct: 9 IIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGAT 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKTTT 122 L +V +++ G + P V DV+ A+ LA + R + + T+I ITGS GKTTT Sbjct: 69 LALVEREVLDEQG-MPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGITGSAGKTTT 127 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++L + T A +GSYN+ +GVPLT+ R + + E+G H+G I +L ++ Sbjct: 128 KDLLAAIFAPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIA 187 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I + AH F G++ I K E+ EG++ TG++ LN DD +L+ S ++ Sbjct: 188 HPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDE--RVLRMASRSV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWK------QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMA 293 T + G+ +A+ Q + + ++ E L+ G E+ IG H Sbjct: 246 APITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQLIGEHHV 305 Query: 294 QNML--MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+L T+ S ++ + I + + R G T+I+++YNANP Sbjct: 306 HNLLAAATIAYNSGISGE---KIARALNKAAAASKWRMARTDRADG-VTVINDAYNANPE 361 Query: 352 SMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 SM AA+ L+Q+ PH R AVLG M E+G+ S H + ++ NIS Sbjct: 362 SMAAALRTLAQLGRTVDPATGQPH---RTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418 Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + G + +A + +T + +++ + GD+V+ KSSN Sbjct: 419 KLIAVGDETKPIYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGA 475 >gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 192/392 (48%), Gaps = 18/392 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLVP---DTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFL 178 T KEM L ++ G+ NN +G+PL+L +PV+ F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSL--LPVEHSHRFAVLEMGMNRPGEIARM 205 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A+ Sbjct: 206 AEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAAR 265 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNML 297 + G + I ++G+++NA + + E + + V +G H N L Sbjct: 266 T---GQQRI-TYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNAL 321 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L+ + P KR + LID++YNANP+SM AA+ Sbjct: 322 AAAALATAAGVSPAEIAAGLAAYRPF---AKRMQLLPFIAGLKLIDDTYNANPSSMLAAL 378 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + + + R +AVLGDM E+GE S + H Sbjct: 379 ATVHNLRR--QRRVVAVLGDMLELGEQSVAAH 408 >gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 459 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 19/366 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SIDSR+I + I G +DG FI G+ +++ + S++IP Sbjct: 27 IKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLIDKNFKIP-KSINIPYI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL LA A R IIAITGS GKTT+K ++ LS K G+ NN Sbjct: 86 IVDDTQKALRDLARAYRKELDIKIIAITGSNGKTTSKNIIHSVLSEKYKVEKTHGNLNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT+ D D G+ E+G GEI LT++ RP +A+IT I AHL E I Sbjct: 146 IGVPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264 A AK EI EGL+ G N DD E+LK S+ + KTI SFG DF++ + Sbjct: 206 AKAKLEILEGLKDDGIFLYNGDD---EILKKVLPSYEIKQKTI-SFGMGDKVDFKVEAKE 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPK 323 S + + + S+ + +G H N G +++L + D + + V K Sbjct: 262 YTSTSTNFSYKDENYSVPL----LGSHQVYN-----GALAVLIGKLFDLSYDQIKVGLSK 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + + F ++D++Y +NP S+K + + + G +I VLGDM E+G+ Sbjct: 313 SSNNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGD 370 Query: 384 LSQSFH 389 + H Sbjct: 371 DELNLH 376 >gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 477 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 148/492 (30%), Positives = 224/492 (45%), Gaps = 54/492 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L+A+ G I + + +IDSR + P F A+ G DGH F+ A Q GA Sbjct: 3 TLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQNGA 62 Query: 66 GLVVVNTDMVASIGSLS----------------IP----VFGVDDVLGALNKLAVAARLR 105 L +V D+ +L IP V++ L AL +LA R R Sbjct: 63 ILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWRRR 122 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +I ITGSVGK+TTKE++ LS +T G+ NN IG+PLTL R+ + + Sbjct: 123 LNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERAVL 182 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G GEI L + +P + VIT I H E IA K+E+ + L G L Sbjct: 183 EMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGGYAIL 242 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----VQLQGKS 280 N+DD + + K+ A I +G + A W E +E + + +S Sbjct: 243 NHDDPWVRWMADKTQA----QILYYGLTPEAHL----WADEIETMGLEGIRFRLHYRRES 294 Query: 281 MEVVHHGIGYHMAQNML--MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQG 337 V IG+H Q L +GIV LT + H + + R A+ Sbjct: 295 FSVRVPLIGHHSVQTALRATAVGIVEGLTWG--------EIIHGLQRSPTQLRLVAVRSS 346 Query: 338 FFTLI-DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDL 392 LI D++YNA+P S A++ +L ++ +GRRIAVLGDM E+G QS H + Sbjct: 347 SGALILDDTYNASPESTLASLQILHEM----KGRRIAVLGDMLELGPYEQSGHEKVGVRA 402 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 AEV + ++ LS A ++A + + + ++ L +GDVV++K S Sbjct: 403 AEVADVL-VAVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKGS 461 Query: 453 NSCGFYRLINLL 464 + R+++ L Sbjct: 462 HGLRMDRIVSAL 473 >gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] Length = 453 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 209/445 (46%), Gaps = 24/445 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R + F A++G +D HD+ AV GA ++V+ + + +P Sbjct: 24 ISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNDGAAALLVSKHL-----PIDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL +A R +S+A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 VVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + D+ + ELG +H+GEI + T +VRP A++ +A AHL F +E + Sbjct: 139 IGVPLTLFRLMPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNA--DFQLRKW 263 A AK EIF GL G LN D +A+ H AL KT + F A DF Sbjct: 199 AQAKGEIFSGLPAQGVAILNADSHD----EARWHDALAGKTRWRFSPQARAGVDFYASDV 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + V G H N L + + A +D L+ Sbjct: 255 GISERGTDFVLHTPAGDIAVTLPLPGRHNIANALAAAALSLAVGASLDAVKAGLAQLQAV 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + AL G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ Sbjct: 315 PGR--LFPIALAPGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGQ 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSL 441 +Q+ H + E NI V G + DA H + L Q + Sbjct: 368 DAQACHRQVGEAARKANIDKVLSVGVLSALIGDASGTGEHFDNKTALIARLRALVAQHNT 427 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE 466 + V++K S S ++++ L E Sbjct: 428 I---TVLIKGSRSAAMEQVVHALQE 449 >gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] Length = 433 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 209/437 (47%), Gaps = 28/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R+I+ FFA++G ++ ++F A+++GA +++ + + V Sbjct: 17 VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIIDDQQYHTDERCIL----VP 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL LA + R+ + +I +TGS GKTTTKE++ LS +T+A G+ NNHIGV Sbjct: 73 DVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ + D++ + E+G +H EI L + P +IT + AHL F G E + Sbjct: 133 PLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNVGMAHLDGFGGFEGVKKG 192 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 KAE++ L ++ G F+N D+ + L A + L Y +S L E Sbjct: 193 KAELYAHLKQQQGKAFINNDNPYL-LEMAHTAQLSDIVYYGSERSNTISGALNSTDPFLE 251 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 SW Q QG V G + +N+L + I + + K LS + P+ R + Sbjct: 252 LSW---QKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQINKGLSGYAPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N T+I + YNANP+SM AA+ + + ++ ++GDM E+G S Sbjct: 309 LTKTEHN----TVICDFYNANPSSMNAALKNMDSLHA---ANKVVIIGDMFELGSESAEQ 361 Query: 389 HIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H+ + +L N++ L FH + + HY E+ +++Q V Sbjct: 362 HLQI--ILQATNMTLDTLIFIGKNFHQAGMGHS------GHYFESPADAAVYLQQQPVKD 413 Query: 445 DVVVVKSSNSCGFYRLI 461 ++++K S +L+ Sbjct: 414 SLILLKGSRGMALEQLL 430 >gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] Length = 463 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 128/447 (28%), Positives = 209/447 (46%), Gaps = 29/447 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I + F +KG DGH+FI A Q GA ++ P V+ Sbjct: 29 IEFDSRKITKGDLFLPLKG-QRDGHEFIDLAFQNGAVATFSEKELPGK------PHLLVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L KLA + + +IA+TGS GKT+TK+M+ LS+ KTY G+YNN IG+ Sbjct: 82 DCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + AHL F ++IA Sbjct: 142 PYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I +G+ G + D L + + FG + D + + S Sbjct: 202 KMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQEIDVTGIQEDKDSLT 255 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V S+ + G + A N ++ + +L + I AL G Sbjct: 256 FTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDIIAALQTV-TLTGNRTE 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ A N ++ + YNANP +M+ + + I+ + G++IAVL DM E+G+ S H Sbjct: 311 WKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILH 368 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY------SETMDGLFLFIQSS 440 L + L+ NI + G H+ L + + VHY + + + ++Q+ Sbjct: 369 SQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAEQEDQFEAMAQYVQNI 428 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L D +++K S+S +L++ L+ + Sbjct: 429 LNPFDQILLKGSHSMSLEKLVDRLVTD 455 >gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners AB-1] gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] Length = 455 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] Length = 455 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 21/457 (4%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + V+ + DSR F + G DGHD++ +AV GA + D Sbjct: 13 GCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHA 71 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ LS Sbjct: 72 NR--PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFN 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + VIT I A Sbjct: 130 VHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEA 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSK 254 H+ F ++IA AK EI + L++ G N D+ LL+A++ L ++ + F Sbjct: 190 HIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF---- 242 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTA 313 N+ + S + ++ IG H N L + + DV+ A Sbjct: 243 NSTDTIYATNFNSYMHHASFAINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA 302 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIA Sbjct: 303 -QALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIA 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSE 428 VLGDM E+G S H LAEVL+ I ++L G + L +AL ++H + + Sbjct: 359 VLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKD 418 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 MD + ++ + D+V++K S+ +++ LL Sbjct: 419 HMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 457 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA VV+ + S+SIP Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGAVAVVIQQEN----SSISIPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAASSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDVWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSSQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + RI + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFRILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + + N+ V G + DA+ + +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVKSSNLDLVCSYGNESAVISDAVLGKHFTDKVDMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIETQLQQNKKVVV 434 >gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] Length = 457 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 221/478 (46%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + + I + DSR I ++ F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLANLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + G++ L D E ++ Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAE-GSLLLAPADPIVE-----AYLPAD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKTNFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 IALQEGVSEEQIRQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTENQDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103] gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103] Length = 452 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 190/387 (49%), Gaps = 25/387 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++ D+R + F AI G +D HDF A+ KGA ++V+ + +S+P Sbjct: 24 LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVSKHL-----PVSVPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A KLA R ++ A ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 79 VVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCGETLHTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVP+TL R+ + + + ELG +H GEI + T LVRP A++ +A AHL F +E + Sbjct: 139 FGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTDLVRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL GT LN D + + + H KT++ F ++ + DF + Sbjct: 199 AKAKGEIFYGLPARGTAILNADSNDWPRWQENLHG---KTVWRFSPQAADCDFGAHDIRI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + ++ +++ G H N L + + A + L G Sbjct: 256 RQDGTHFVMRTPRGEADIILPLPGRHNIANALAAAALALSVDAPLSAVQAGLKSLQSVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R + +Q ++D+SYNAN SM AA VLS++ G R+ V+GDM E+G+ S Sbjct: 316 RLFPVRLSEHQ---LILDDSYNANVGSMVAAAQVLSEMP----GYRVMVVGDMAELGDES 368 Query: 386 QSFHID---------LAEVLSLYNISH 403 + FH + L VLS SH Sbjct: 369 EKFHREVGLAAKAAGLDRVLSTGQFSH 395 >gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] Length = 455 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 181/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL KLA A R + ITGS GKTT KEML L + A G+ Sbjct: 81 --VDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLACVLRHRFGNEAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + P++A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYSVIEMGMNHFGELSLLTQIAGPNVALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI+EGL G + +D+ +A + L +T +A+ Sbjct: 199 GVGDIAKAKSEIYEGLLSDGIALIPCEDANIATFEAATAQLNAQTFGVASGDVHAENIEL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + + VV G H N + + + L F Sbjct: 259 KPLSCE----FDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + QG TLID++YNANP SMKAAI VL+ + RI V+GDM Sbjct: 315 NIKG-----RLNIKQGIKGATLIDDTYNANPDSMKAAIDVLAAMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] Length = 493 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 207/467 (44%), Gaps = 57/467 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIG---------SL 81 IDSR + P F A+ G +GH F+ + +GA G +V T++ A +L Sbjct: 36 IDSREVEPGTLFVALAGERTNGHTFLPDVIARGALGALVSRTEIEARTTILARTPRRWAL 95 Query: 82 SIPVFG---------------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 PV G VDD L AL +LAV R + T++ ITGSVGKT+TKE L Sbjct: 96 VNPVTGAGLDSATPGVCLLIAVDDPLMALQRLAVYHRRQLTPTVVGITGSVGKTSTKEAL 155 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS T S+N+ VP TL ++ + + E+GM GEIRFL L RP I Sbjct: 156 AALLSQRFCTLKSKRSFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLARPQI 215 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++T + P HL E I AKAE+ E L + G LN DD ++ ++A Sbjct: 216 GLVTNVGPTHLERLKSQEAIWYAKAELVEELPRDGWAVLNADDPLVWAMRDMTNA----R 271 Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++S+G + +A W E M V Q + + + IG H L + Sbjct: 272 VFSYGLAPHATL----WANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMS 327 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + IL + I L+ R R Q TLID++YNA P S AA+ +L Sbjct: 328 VGLILGMEWPAMIAGLT----DPAAQARLRVVAGQHATTLIDDTYNAAPISTLAALDLLG 383 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLAL 414 GRR+A+LGDM E+G + H +A++L +W++ A Sbjct: 384 ATP----GRRVAILGDMLELGSAEEEGHRQVGQRAAQVADLLVTVGQRAIWIAE----AA 435 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + A S H+ T ++ L+ GD +++K+S ++ Sbjct: 436 RQAGMPSAHILVCMTNAEAIASVRPRLMPGDHILLKASRGMALEEIV 482 >gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] Length = 459 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 193/385 (50%), Gaps = 19/385 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ IS D+R++A F A++G +D H F+ AV KGA VV+ + +SIP Sbjct: 27 VSHISTDTRTVAAGALFLALQGERFDAHQFVAQAVAKGAVAAVVSR----PLADVSIPQI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL ++A R + I+AITGS GKTT KEM L A G+ NN Sbjct: 83 LVADTRIALGQIAAWVRAQLDLQIVAITGSCGKTTLKEMCAAILQQAAPVLATQGNLNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL R+ D + + ELG +H GEI + T LV+P +AVI +A AHL+ F + + Sbjct: 143 IGVPQTLLRLTPDDRYAVVELGANHPGEIAWTTSLVKPDVAVINNVAAAHLAGFGSLRGV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL +GT +N D F++ + L ++T +SFG ++ ADF+ Q Sbjct: 203 AVAKTEIFSGLSDSGTAVINADSEFYDWWR---EILSVRT-FSFGVENPKADFRAENITQ 258 Query: 266 CSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 EQ L +++ G H N L + + L + L+ P Sbjct: 259 -DEQGIAAFTLISPLGQIDIQLPIPGLHNVSNALAAAAVTTSLGLSLVQVQSGLANMLPV 317 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + + + TLID++YNA+ S+ AAI L+ + P G R+ GDM E+G Sbjct: 318 KGRFCVQKLSDD---LTLIDDTYNASVQSVMAAIDTLA-VMP---GYRVLAFGDMGELGA 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 + H + E L + V+ G Sbjct: 371 DAADLHRQIGEHARLKKLDAVFTVG 395 >gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 504 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 212/458 (46%), Gaps = 32/458 (6%) Query: 30 ISIDSRSIAPQEAFFAIK-GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR + + + K G DGHDFI A+ GA V+ A G+ + P V Sbjct: 30 VTPDSREVTAEGTLYVAKPGERADGHDFIDTALGAGAAAVLAERATHAPDGA-AHPAIIV 88 Query: 89 DDVLGALNKLA--VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 +D + A+ LA V R+R S T+I ITGS GKTTTK++L L++ T A +GSYN Sbjct: 89 EDAVLAMGALAREVVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYN 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 +GVPLT+ R +D F + E+G H+G I +L +VRP I V+ + AH +F G+ Sbjct: 149 GEVGVPLTVFRAELDTRFLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVA 208 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---------LGI-KTIYSFGKSK 254 IA K E+ E L G LN DD + A++ A G+ + + Sbjct: 209 NIARTKGELVEALGPDGVAVLNLDDERVAGMAARTAAPITWFTADERGVTRAAEDVAAGR 268 Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTA 308 + + + +Q LQ G V H + G H N+L Sbjct: 269 ASGLVAARDVRSDDQERPVFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGM 328 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D + L P R + R G T+I+++YNANP SM+AA+ L+ + Sbjct: 329 DPAEIARGLDGLGPAS-RFRMERTDRADG-VTIINDAYNANPESMRAALRTLATLG-RSS 385 Query: 369 GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422 GRR AVLG+M E+G+ H + E + NI+ + + G ++ AL + Sbjct: 386 GRRTWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEG-SWGE 444 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 H+ + F+ L GD+V+VKSSN G L Sbjct: 445 EAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNGVGLAAL 482 >gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 180/366 (49%), Gaps = 19/366 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SIDSR+I + I G +DG FI G+ +++ + S++IP Sbjct: 27 IKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLIDKNFKIP-KSINIPYI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL LA A R + IIAITGS GKTT+K ++ LS K G+ NN Sbjct: 86 IVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTSKNIIHSVLSEKYKVEKTHGNLNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ D D G+ E+G GEI LT++ RP +A+IT I AHL E I Sbjct: 146 IGLPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264 A AK EI EGL+ G N DD E+LK S+ + KTI SFG DF++ + Sbjct: 206 AKAKLEILEGLKDDGIFLYNGDD---EILKKVLPSYDIKQKTI-SFGMGDKVDFKVEARE 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPK 323 S + + + S+ + +G H N G +++L + D + + V K Sbjct: 262 YTSTSTNFSYKDENYSVPL----LGSHQVYN-----GALAVLIGKLFDLSYDQIKVGLSK 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + + F ++D++Y +NP S+K + + + G +I VLGDM E+G+ Sbjct: 313 SSNNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGD 370 Query: 384 LSQSFH 389 + H Sbjct: 371 DELNLH 376 >gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 459 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 25/466 (5%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + G Sbjct: 4 SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D P VDD L AL +L + ++A+TGS GKTTTK+ Sbjct: 63 AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTKD 121 Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 M+ L++ + KTYA ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ LL+ ++ Sbjct: 179 TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAK 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L +T +FG+ + D + V + + +G + N L + Sbjct: 236 LSQQT-KTFGRQLDDDLYATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMT 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ +AL E R + A + ++ + YN+NP ++K ++ L+ Sbjct: 294 VGKLMHVTPANMKQALQNVELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLA 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 351 TIPV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKA 408 Query: 422 ------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +H + + L +Q+SL GDVV++K+S+ +++ Sbjct: 409 GYPAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVL 454 >gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] Length = 466 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/456 (30%), Positives = 216/456 (47%), Gaps = 20/456 (4%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+L A +G + + IDSR++ P F + G DGH F AV+KG Sbjct: 4 TLSDILAATGAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + + PV V D + AL +LA A R R A ++A++GS GKTT KE Sbjct: 64 AAAVLADRPLAGL--PEGTPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVKE 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + T ++NN IG+PL++ + + ELG+S GE+ L + P Sbjct: 122 LTAAILGKVGPTAKNYKNFNNRIGLPLSMLEAGENDALWVMELGISAPGEMAPLASIAEP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-G 243 +AVI + PAHL + +A+ K +F L GT + D + EL A A G Sbjct: 182 DVAVIHNVGPAHLQALGDVAGVAAEKTFLFRSLRPGGTALASMD--YPELWDAARAAFPG 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ + + K + A ++ + SE + ++L +EVV G H A+N+L Sbjct: 240 VRGMST--KGQAAPYRAKYLGAISEGRGRFFLKLDDLELEVVTPLTGGHFAENILAAAAA 297 Query: 303 VSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 IL A + + A + P++ R+ C QG +TLID++YNANP SM+ AI+ + Sbjct: 298 ARILGAGEPEIAAGLATAVMPEQ----RFFC-RRQGCYTLIDDTYNANPLSMRRAIAAAA 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + + + VLG+M EMG +++ H L E + + V+ G H A+ + L RS Sbjct: 353 ETAQARP--LVLVLGEMREMGAHAEAEHGKLGEAAAASGANAVFYHGAHAEAVGEGLTRS 410 Query: 422 IHVHY---SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + +T D + G V + K S S Sbjct: 411 GYAGRFAVVDTPDAFLGALAPMGFGGGVFLFKGSRS 446 >gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax ferrireducens T118] gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodoferax ferrireducens T118] Length = 480 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/383 (29%), Positives = 183/383 (47%), Gaps = 25/383 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSL 81 + + D+R++AP + F A++G H+D HDF+ A +GA V D+ A + ++ Sbjct: 28 LIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVAAVCQASDAGDVEAKLRAV 87 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTY-AC 139 +P V D AL +LA R + +IA+TGS GKTT +M+ L + K + Y + Sbjct: 88 GLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAILRAYKPQAYLST 147 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IGVPLT+ R+ + + ELGM+H GEI L + +P +A++ HL Sbjct: 148 QGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPTVALVNNAQREHLEF 207 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--GKSKNAD 257 + +E +A + + L G DD++ L K+ G + + F Sbjct: 208 MATVERVAQENGSVIDALPAHGVAVFPADDTYSPLWADKA---GSRVVMRFGSAADGAGA 264 Query: 258 FQLRKWKQCSEQSWMEVQLQ------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 Q+R C + W V Q +++ G H +N L + + Sbjct: 265 AQVR----CLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKNSLAAVACTLAAGVPLK 320 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + LS F P +GR + + TL+D+SYNANP S++AAI VL+ + G R Sbjct: 321 HIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRAAIDVLASLP----GPR 376 Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394 + VLGDM E+G+ FH + + Sbjct: 377 LLVLGDMGEVGDQGPQFHAEAGQ 399 >gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis HI4320] gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus mirabilis HI4320] Length = 460 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 202/446 (45%), Gaps = 15/446 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + IS DSR I F A+ G +D HDFI QKGA V+VN + + Sbjct: 27 QLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI-----DVEC 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V D A+ +A R S A I+A+TGS GKT+ KEM L +T G+ Sbjct: 82 PQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ + F + ELG +H+GEI + ++V+P A++ + AH+ F + Sbjct: 142 NNDIGVPLTLFRLTPEHRFAVIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSL 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + IA AK EIF GL++ GT +N + L + ++ + +S ADF Sbjct: 202 QGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQHFNSRQTQWSFSLSADSQADFYPTNI 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + G H N L + + A + + L+V Sbjct: 262 VVNQLTTDFTLHTPEGGVAITLPLPGRHNIANALAASALALSVGATLTDIQQGLAVLKAV 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR Y L G L D++YNAN SM A + VLSQ+ G +I V GDM E+GE Sbjct: 322 PGR--LYPVELTTGKIVL-DDTYNANDGSMIAGLQVLSQLP----GYKIFVAGDMAELGE 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442 S+ H D+ I V G + + H + ++ + L +Q Sbjct: 375 DSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQENKGGEHFSFKADLLTQLIPLLQQH-- 432 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468 D V+VK S S ++N L E F Sbjct: 433 DVVSVLVKGSRSSAMEDIVNALKECF 458 >gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 442 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 221/450 (49%), Gaps = 39/450 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R FFA+KG +++G+ F A+++G VV+ IG+ + VD Sbjct: 17 ITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVDESTPDMIGNEQYII--VD 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L +LA R TII ITG+ GKTTTKE+L L+ +G+ NN IGV Sbjct: 75 NVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNLNNDIGV 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L +V P+ A+IT + AHL F + + Sbjct: 135 PKTLLRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRT 194 Query: 210 KAEIFEGLE---KTGTIFLNYDDS-----FFELLKAKSH-----ALGIKTIYSFGKSKNA 256 KAE+++ +E + IF+N + + F K++S+ ++ + + N Sbjct: 195 KAELYDFMEAHNRANNIFINAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANN 254 Query: 257 DFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 F +WK+ + +S W V H IG + NML + I + + Sbjct: 255 PFVSFRWKETNNESDTWHNVGT---------HLIGAYNIANMLAAVSIGRTMGVESKDIC 305 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 KAL + P R + + A N T+I ++YNANP SMKAA+ ++ R++ + Sbjct: 306 KALENYIPSNNRSQLIKTAHN----TIIMDAYNANPTSMKAALENFIKMDVE---RKMVI 358 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+GE+S H + ++L+L VWL G +A ++ E ++ + Sbjct: 359 LGDMKELGEVSNCEHQKICDLLNLAQFDCVWLVGKEFMATQNDFKS------FENVEQVI 412 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + V ++VK SN G L ++L Sbjct: 413 AELQQTDVQNFCILVKGSNGIGLACLKDVL 442 >gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] Length = 465 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%) Query: 23 PQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 P+G V I+ DSR ++ F AIKG DGH FI + GA + + Sbjct: 20 PEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIPGSFADGALAALAEV----AP 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V V L A+ +A + A ++ I GSVGKT+TKEM+ L+ +T Sbjct: 76 AETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIGSVGKTSTKEMVAAVLAQKYRTLK 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NN +GVPLT RM + + G+ E+G++H GE+ L + RP V T + AHL Sbjct: 136 TEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEMHRLAKITRPDTVVFTNVGTAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + I AK+E+F+ +++ G + +N DD + L S G+ + FG + Sbjct: 196 FLGSRDGILKAKSEVFDFMDEKGHVIVNGDD---DKLSTISEVHGVAPV-RFGIGEQGYS 251 Query: 259 QLRK-WKQCSEQSWME-----VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 W +E + + S EV+ G HM N L + + ++ Sbjct: 252 HPNDVWADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQ 311 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + + P GR + +T+ID+ YNANP SMKA+IS+L + GRR+ Sbjct: 312 IRSGIESYMPLSGRFH----IIKGDSYTVIDDCYNANPGSMKASISILKEAL----GRRV 363 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 A+LGDM E+GE +++H ++ + I + G AL +A+ ++ V Y ET Sbjct: 364 AILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVG----ALSEAMAKAA-VDYMETHPE 418 Query: 433 LFLFIQ-----SSLVD--------GDVVVVKSSNSCGFYRLINLL 464 ++ +L+D D ++VK+S++ GF R+++ L Sbjct: 419 AHCLVRHYPTVEALMDDCGEILEKNDTILVKASHAMGFGRIVSGL 463 >gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 473 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/459 (29%), Positives = 208/459 (45%), Gaps = 28/459 (6%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + DSR + P F AI+G DGH F AV GA V+ + + Sbjct: 23 PERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLADH-------PV 75 Query: 82 SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P VDD + L +LA L +I ITGS GKT+TK++ L+ + T A Sbjct: 76 GVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLARLGPTVAPT 135 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 GS N +G+PLT+ R D F + E +G I +L + P I V+ + AHL F Sbjct: 136 GSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAPPRIGVVLNVGSAHLGEF 195 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA AK E+ E L GT LN DD ++ ++ A + +FG S +AD + Sbjct: 196 GSREAIAQAKGELVEALPADGTAVLNADDPLVLGMRHRTRA----RVVTFGTSADADVRA 251 Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + S+ G + V G H N L + +L + AL Sbjct: 252 TEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHVSNALAVATVAWVLGLGAEEIAAALR 311 Query: 319 VFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 P R+R + T+I+++YNANP SM AA++ L+ + RRIAVLG Sbjct: 312 EARPL----SRWRMEVTTRDDGVTVINDAYNANPESMTAALTALAAAT---AARRIAVLG 364 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DG 432 M E+G + + H ++ E + + + + G + D R + T+ Sbjct: 365 PMAELGPAAPAAHAEVGETAARVGVDWLIVVGADATPIADGARRGGLAAEAVTVVPDAAA 424 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + +L GDVVV+K+S S G ++ LL + PA+ Sbjct: 425 ATALLTPALRAGDVVVIKASRSYGLEQVAAALLAQTPAV 463 >gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 456 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 132/452 (29%), Positives = 218/452 (48%), Gaps = 33/452 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I F + + DGH ++ A+ GA + D +I SI V Sbjct: 25 ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +L ++ ++AITGS GKTTTK+M L++ + ++NN Sbjct: 83 PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ FL+ L P +AVIT I AH+ F + I Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G + +N D+ LL K+ + + + +FG N D +R Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNND--MRAMDIV 256 Query: 267 SE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S+ +W EV + IG + N L L + +I VD KAL+ Sbjct: 257 SDATKTSFKVATWPEVDF-------TINMIGAYNVFNALAALSVGNIYHIPVDKMQKALA 309 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + ++ + YN+NP ++K + Q+ EG+RI VLGDM Sbjct: 310 SFDLTANRTEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDM 364 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFL 435 E+GE + H +LA+ ++ I V+L G + L + L +H+ + D L L Sbjct: 365 LELGEKAAEMHNNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQIHHYQKDDLLTL 424 Query: 436 F--IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +++ L+ D+V++K+S+ +++ L+ Sbjct: 425 TSDLKNELMSDDIVLLKASHGIHLENVVSELI 456 >gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] Length = 452 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 194/383 (50%), Gaps = 16/383 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ D+R + F A+KG +D HDF+ A + GAG ++V+ + + S+P Sbjct: 24 VDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGAGALLVSRKL-----ACSLPQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L KT G+ NN Sbjct: 79 VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGKTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + +F + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTREHEFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G LN D++ + L +S +G + ++ F + +DF + Sbjct: 199 AKAKGEIFTGLPQDGIAILNADNN--DWLNWQS-VIGDRQVWRFSPNAAGSDFTASDIQV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++ S++V+ G H N L + + A +D L+ G Sbjct: 256 TSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMAVGAGLDAVKAGLAKLQAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +L Q L+D+SYNAN SM AA VLS + G R+ V+GDM E+G+ S Sbjct: 316 R--LFPISLAQHKL-LLDDSYNANVGSMTAAAQVLSDMP----GYRVLVVGDMAELGDES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 ++ H + E I V+ G Sbjct: 369 EACHRQVGEAAKAAGIDRVFSVG 391 >gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] Length = 465 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 213/456 (46%), Gaps = 31/456 (6%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + IDSR++ P F AI+G DGHDF AV+ GA V+ + + A Sbjct: 23 PRAVVRGPVVIDSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPVDA----- 77 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 P V D + AL LA A A L S T+I +TGS GKT+TK++L + I T A Sbjct: 78 --PAVVVGDTVTALADLATAVCADLPST-TVIGVTGSAGKTSTKDLLARLTARIGPTIAP 134 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 + S+NN IG PLT+ + D + + EL G I L + P I V+ + AHL Sbjct: 135 VESFNNEIGHPLTVLKAGEDTRYLVLELSARDAGHISHLARIAPPRIGVVLNVGTAHLGV 194 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F G + IA AK E+ E L G LN DD + ++ A + +G++++A + Sbjct: 195 FGGKDAIAKAKGELVEALPADGVAVLNADDPLVAAMARRTDA----RVAWYGRAESAAVR 250 Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ ++ + VV G H +N L L V T + LS Sbjct: 251 AEGVTLDDRGRAAFTLRTPSGAAPVVLRLYGEHAVENALAAAAAAYELGLPVATIAEELS 310 Query: 319 VFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 P+ R+R + T+I+++YNANP SM+AA L ++ G RR AV+ Sbjct: 311 EAEPR----SRWRMEVTDRADGVTVINDAYNANPDSMRAAFGALDALA--GGRRRFAVIA 364 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VL----ALKDALPRSIHVHYSET 429 + E+GE S + + + + + + +++ G VL A D +P + V + Sbjct: 365 ALRELGEESAALNEGVGRMAAGAGLEGLFVVGPDAGPVLAGAGAAVDGVPSATRVTHVAD 424 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + LV GDVV+VK + G R+ L+ Sbjct: 425 AQEAAAALSALLVPGDVVLVKGPRAAGLERVAAALV 460 >gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK49] Length = 456 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/442 (29%), Positives = 211/442 (47%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + +V L VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSERPVVEGAYIL------VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + +S+++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 DCNFLEQSIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++ VL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLVVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ V Y + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVQYFVKNDEKDQFEQLKQAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxidans DMS010] gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxydans DMS010] Length = 451 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 184/374 (49%), Gaps = 27/374 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G +D+R I + F A+KG H DGHD++ A + +V+ I ++P Sbjct: 25 VSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQAREA-----GAAAALVSEIQDDALPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV A +A A + + KA ++AITGS GKT+ KEM+T L + A G+ NN Sbjct: 80 VVADVRKAFAHIARAWQQQCKARVVAITGSNGKTSVKEMVTTMLKQVGSVTATQGNLNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL+ + D DF + E+G +H GEI L ++V P IAVI IA AHL+ F +E + Sbjct: 140 LGVPLTLSCLNQDDDFAVIEMGTNHHGEIAELVNIVVPDIAVINNIAAAHLAGFGSLEGV 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K I++GL G +N D + L + +G + SF AD + + Sbjct: 200 AKEKGAIYDGLAANGIAVVNADMPYQRLWQP---LIGDRKTISFSLESEADIKADYIQLD 256 Query: 267 SEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 S V + +V HH G H N L + + L VD +K LS+ Sbjct: 257 PASSHFLVNID----DVSHHFNLPLPGMHNVNNALAAIAVAVALDIPVDAMVKGLSLM-- 310 Query: 323 KEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 R +R + QG LID++YNANP S A++ L+ +G VLGD E Sbjct: 311 ---RSVPHRLQVRQGVNDSRLIDDTYNANPGSYLQALNTLTAF----QGEHWLVLGDFGE 363 Query: 381 MGELSQSFHIDLAE 394 +G + + H + + Sbjct: 364 LGIDNDNIHQQMGQ 377 >gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 10403S] Length = 457 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 26 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455 >gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 518 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 149/486 (30%), Positives = 226/486 (46%), Gaps = 47/486 (9%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASI-- 78 P V+G + DSR I P F A+ G H DGH+F A+ +GA V+ D+ VA++ Sbjct: 23 PHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLAAKDVGVAAVIM 82 Query: 79 -------GSLS-----IPVFGVDDVLGALNKLA--VAARLRSK--ATIIAITGSVGKTTT 122 G S P V+ ++KLA VA+ L ++ +I+ ITGS GKT+T Sbjct: 83 PKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIVGITGSAGKTST 142 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS+ +T A GS+NN +G P T+ R F + E+ +G I L + Sbjct: 143 KDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCTESTKFLVAEMSARGIGHIAHLATIA 202 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKS 239 P V+ I AHL F E IA+AK E+ E L G LN DD + ++ Sbjct: 203 PPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPSAAEGGVAILNADDPLVAGMAPRT 262 Query: 240 HALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A + + G+ AD+ + S+ + V + G H N L Sbjct: 263 RA---RVVTFSGQHGAADYYATDISLDDVTRASFTLHSPHNEPQRVELNVFGAHQVSNAL 319 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D T ++LS H + G R T+I+++YNANP SM+A I Sbjct: 320 AAAAVGIESGIDAATVARSLSSAHGES--GNRMDVQTRADGVTVINDAYNANPDSMRAGI 377 Query: 358 SVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLAL 414 + L + G R IAVLG+M E+G S S H +L L+ Y ++H+ G + + AL Sbjct: 378 AALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELARYRVTHLVAVGDNDAMDAL 437 Query: 415 KD-ALPRSIHVHYSETMDGLFLFIQSSLV------DG-------DVVVVKSSNSCGFYRL 460 KD A R I+V + ++ +Q+ L +G DVV+VK+SN+ G + + Sbjct: 438 KDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYERDARDVVLVKASNALGLWAV 497 Query: 461 INLLLE 466 N LL Sbjct: 498 ANALLR 503 >gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] Length = 456 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 218/471 (46%), Gaps = 57/471 (12%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I I + G+ D+R+I P F I G ++GHDF+ A+ +GA + +T + Sbjct: 19 INISEDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTKEADAP 78 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L P+ V+D + AL +LA A +IA+TGS GKTTTK+M+ ++ K Sbjct: 79 EDL--PLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCETLWKVQK 136 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLT+ + D + I E+GMS GEI L+ + P A+IT I +HL Sbjct: 137 TQGNFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEPDAAIITNIGESHLQ 196 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS-HALGIKTIYSFG-KSKNA 256 + E IA AK EI +GL+ + + D+ L +S H L +FG + N Sbjct: 197 DLGSRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPHPL-----LTFGHRDTNR 251 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAI 314 F E+VH +G +++ N + + I + +V AI Sbjct: 252 YF---------------------PQEIVHEPNGTRFNVGGNEIGSYFITVLGAHNVLNAI 290 Query: 315 KALSV--------------FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ F + G R T+I+++YNA+P S+KAA+ ++ Sbjct: 291 AVIATARWFGIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELV 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALKDA 417 + H + VLGDM E+GE + FH D ++ I+ V+ G H+ K A Sbjct: 351 QDMKGH--QNKYVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHI--QKGA 406 Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L R +H+S+ L ++S L D+V++K S + LL Sbjct: 407 LRRFEEERAMHFSDK-PALISHLKSVLKSDDLVLIKGSRGMKLEEVAEALL 456 >gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] Length = 455 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 217/446 (48%), Gaps = 21/446 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + DSR F + G DGHD++ +AV GA + D +IPV Sbjct: 24 VSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAVAALWQKDHANR--PENIPVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L AL KLA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 VVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + E+GM G++ L+ +V P + VIT I AH+ F ++I Sbjct: 141 IGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQ 265 A AK EI + L++ G N D+ LL+A++ L ++ + F N+ + Sbjct: 201 ADAKMEITDFLKEDGKFIFNGDEP---LLQARAQKLNQLQATFGF----NSTDTIYATNF 253 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKE 324 S + ++ IG H N L + + DV+ A +AL+ F P Sbjct: 254 NSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA-QALANFVPTA 312 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + L + ++ + YN+NP + KA ++ SQ+ GRRIAVLGDM E+G Sbjct: 313 NRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAA 369 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQS 439 S H LAEVL+ I ++L G + L +AL ++H + + MD + ++ Sbjct: 370 SHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLRE 429 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 + D+V++K S+ +++ LL Sbjct: 430 DIKPHDIVMLKGSHGMHLEKVLEHLL 455 >gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] Length = 427 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 218/453 (48%), Gaps = 44/453 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + P F A+KG +DGHDF AV GAG ++V+ ++ +G P V Sbjct: 1 MTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL--VGG---PQLVVK 55 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN IGV Sbjct: 56 DTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGV 115 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 116 PLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 175 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF GL GT +N D + + + H K ++ F +++ DF + S Sbjct: 176 KGEIFAGLPAKGTAIINADSNDWPHWQETLHH---KRVWRFAPHGAEDIDFFASDVRIAS 232 Query: 268 EQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + ++ +E+ L G+ H+ A + M++G + T ++A Sbjct: 233 QVTYFTLHSPFGTVAIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQLQA 287 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + G+ + L G L+D+SYNAN SM AA VL+++ G R+ V+G Sbjct: 288 VP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVG 334 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF-- 434 DM E+GE + H + E I V G L DA H T+ Sbjct: 335 DMGELGETAVDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDASGCGEHFQDKNTLAARVSE 394 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ ++ V++K S S ++ L E+ Sbjct: 395 LLLEHPVI---TVLIKGSRSAAMEDVVRALQEK 424 >gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter sp. 638] gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterobacter sp. 638] Length = 452 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 220/443 (49%), Gaps = 21/443 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ D+R I P F A+KG +D HDF A + GAG ++V+ + + +P Sbjct: 24 VDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGAGALLVSRKL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 VVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + ++ + ELG +H GEI + L RP A++ +A AHL F +E + Sbjct: 139 IGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVDLTRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G +N D++ + + + +G + + F + N+DF Sbjct: 199 AKAKGEIYGGLPENGIAIMNADNNDWLNWQ---NIIGSRKTWRFSPNAANSDFSATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++ ++V+ G H N L + + A D AIK + + K Sbjct: 256 TSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAAALSMAVGATHD-AIKT-GLLNLKAV 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G+ + L + L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G+ S Sbjct: 314 PGRLFPIQLAEKKL-LLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++ HI + + I V +G A+ A + H+++ L ++ + + Sbjct: 369 EACHIQVGDAAKASGIDCVLSAGKLSQAISQA--SGVGEHFADKT-ALITRLKKLVAEHQ 425 Query: 446 V--VVVKSSNSCGFYRLINLLLE 466 + V+VK S S +++ L E Sbjct: 426 IVTVLVKGSRSAAMEEVVHALQE 448 >gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] Length = 454 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 213/449 (47%), Gaps = 33/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFG 87 ++ DSR + P F A G +DGHDF A++ GA VV+N + V S+ P Sbjct: 28 VTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVLNHPVEGVPEEKSVICP--- 84 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D A+ L R + ++ +TGSVGKTTTK+M A++ T G+ NN + Sbjct: 85 --DSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTIKTEGNQNNEL 142 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+P T+ R+ + + + E+GMSH GEI L+ RP + +IT I +H+ N E I Sbjct: 143 GLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIGNLGSQENIC 202 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI GL + + LN DD F H ++ ++ +NAD +Q Sbjct: 203 KAKLEICAGLPEGAPLVLNGDDPFLRKAVLPDH---VRPVWFSLGDENADVCALSIQQ-- 257 Query: 268 EQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ M L+ + V +G H N L + L + I L+ F E Sbjct: 258 DEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLADF---E 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G R + +G +I++ YNANP SMKAA+++ + RR A+LGDM E+G++ Sbjct: 315 QTGMRQKVVHARG-VDVIEDCYNANPDSMKAALAMFREYPCK---RRFALLGDMLELGDI 370 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH-YSETMDGLFLFIQ 438 S++ H ++ + ++ G V+A LP ++H Y++ + L +Q Sbjct: 371 SRAAHEEVGRQAVENKVDYLVTYGEQAKRIAVVAAAKGLP-TLHADTYAQAAETLLDKMQ 429 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 GD ++VK+S +++ + +E Sbjct: 430 P----GDALLVKASRGMALEKVLEIFYKE 454 >gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 461 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 27/413 (6%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ + + +S+ + +N I DSR+I + F ++G DGHDFI A + G Sbjct: 4 TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VA+ +I P V++ L A KLA + + +IA+TGS GKT+ Sbjct: 63 A---------VATFSERAISGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTS 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ L+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I+ L+ + Sbjct: 114 TKDMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRI 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RPHIA++T I AHL+ F E+IA K +I +G++ G I + D + S Sbjct: 174 ARPHIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + FG + + + K+C + + + V G + A N ++ Sbjct: 231 ---QMVIRFGDHQ--ELVVEDIKECKDSLTFRTNVLPRP--VTLPLTGKYNATNAMIAAY 283 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L + I+AL R + + A L+ + YNANP +M+ + + Sbjct: 284 VGKLLAVPDEDIIEALETVKLTRHRTEWVKAA---NGADLLADVYNANPTAMRLILETFA 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 I + G++IAVL DM E+G S + H L L I + G + AL Sbjct: 341 AIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQAL 393 >gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 452 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 207/443 (46%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R F A+KG +D HDF+L A+ G ++V+ + + + + Sbjct: 27 VTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVSKRLPVDVSQVVVA----- 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R +S A I+A+TGS GKT+ KEM L +T G+ NN IGV Sbjct: 82 DTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + ELG +H GEI + T LVRP A++ +A AHL F + +A A Sbjct: 142 PLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268 K EIF GL GT +N + + + + H KT++ F + ++DF ++ Sbjct: 202 KGEIFSGLPLNGTAIINGESNDWPHWQQALHG---KTVWRFSPGQADSDFYASDVIISAQ 258 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + ++V G H N L + + A + + LS GR Sbjct: 259 GTHFTLHSPQGDVDVTLPLPGRHNIANALAASALALSVGAPLSAVRRGLSTLKAVPGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + AL+ L+D+SYNAN SM AA VL+ + G R+ ++GDM EMG + Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGM----PGYRVMIVGDMAEMGAEAAEC 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444 H + + I V +G + DA + H+++ + L Q + Sbjct: 372 HRQVGNAIRHAGIDKVLSTGLLSHGISDA--SGVGEHFADKAALGARAIELLAQHQHI-- 427 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 ++VK S S +++ +L E+ Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449 >gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] Length = 460 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 201/446 (45%), Gaps = 15/446 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + IS DSR I F A+ G +D HDFI QKGA V+VN + + Sbjct: 27 QLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI-----DVEC 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V D A+ +A R S A I+A+TGS GKT+ KEM L +T G+ Sbjct: 82 PQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILRHCGETLYTHGNL 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ + F + ELG +H+GEI + +V+P A++ + AH+ F + Sbjct: 142 NNDIGVPLTLFRLTPEHRFAVIELGANHIGEIAYTVDMVKPDSALVNNLFSAHIEGFGSL 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + IA AK EIF GL++ GT +N + L + ++ + +S ADF Sbjct: 202 QGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQHFNSRQTQWSFSLSADTQADFYPTDI 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + G H N L + + A + + L+V Sbjct: 262 VVNQLTTDFTLHTPEGCVAITLPLPGRHNIANALAASALALSVGATLTDIQQGLAVLKAV 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR Y L G L D++YNAN SM A + VLSQ+ G +I V GDM E+GE Sbjct: 322 PGR--LYPVELTTGKIVL-DDTYNANDGSMMAGLQVLSQLP----GYKIFVAGDMAELGE 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442 S+ H D+ I V G + + H + ++ + L +Q Sbjct: 375 DSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQENEGGEHFSFKADLLTQLIPLLQQH-- 432 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468 D V+VK S S ++N L E F Sbjct: 433 DVVSVLVKGSRSSAMEDIVNALKECF 458 >gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arsenophonus nasoniae] Length = 452 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 189/369 (51%), Gaps = 16/369 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++N ++ +SR + F A+KG H+DGH F A GA ++V + ++ P Sbjct: 21 WLNAVTTNSRQRPIKGLFIALKGKHFDGHHFAEQATIAGASALLVERPL-----TIHCPQ 75 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D A+ KLA R +SKA +I +TGS GKT+ KEM+ L+ T G++NN Sbjct: 76 VIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEGNFNN 135 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ + ++ + E+G +H+GEI + T++VRP ++ + AHL F + Sbjct: 136 DIGVPLTLFRLTAEHEYAVIEMGANHIGEIAYTTNMVRPDSVLVNNLFAAHLEGFGSLTG 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKW 263 +A AK EIF+GL + GT +N ++ +S+ +T++ F K + ADF Sbjct: 196 VAKAKGEIFQGLAEQGTAVINLASHDWK--NWQSYFKQQQTLWRFSLTKQQQADFYAENI 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S S E+ + G H N L + + A ++ L+ P Sbjct: 254 AIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMSVGATLEQVSLGLAHVQPV 313 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR Y L G ++D++YNAN SM AA VLSQ+ G RI V+GDM E+G+ Sbjct: 314 SGR--LYPIYLAPGKL-ILDDTYNANTGSMIAAADVLSQMP----GYRILVVGDMGELGD 366 Query: 384 LSQSFHIDL 392 ++ H ++ Sbjct: 367 KTEKCHQEV 375 >gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] Length = 466 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 207/449 (46%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ V G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG+ Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGEGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL QG S V G H QN + L Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSF-VRLPFAGEHNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R + + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 539 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 220/475 (46%), Gaps = 37/475 (7%) Query: 10 LLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++A G +IG+ Q F + + DSR + F A G DGH FI A ++GA Sbjct: 9 IIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMAFERGAT 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKTTT 122 L +V +++ G + P V DV+ A+ LA + R + + T+I ITGS GKTTT Sbjct: 69 LALVEREVLDEQG-VPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGITGSAGKTTT 127 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++L + T A +GSYN+ +GVPLT+ R + + E+G H+G I +L ++ Sbjct: 128 KDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVGNIEYLANIA 187 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I + AH F G++ I K E+ EG++ TG++ LN DD +L+ S ++ Sbjct: 188 HPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDE--RVLRMASRSV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWK------QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMA 293 T + G+ A+ Q + + ++ E L+ G E+ IG H Sbjct: 246 APITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQLIGEHHV 305 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L V+ + I + + R G T+I+++YNANP SM Sbjct: 306 HNLLAA-ATVAYNSGISGEKIARALNKAAAASKWRMARTDRADG-VTVINDAYNANPESM 363 Query: 354 KAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 AA+ L+Q+ PH R AVLG M E+G+ S H + ++ NIS + Sbjct: 364 AAALRTLAQLGRTVDPATGQPH---RTWAVLGAMLELGDASVEEHDRIGRLVVRMNISKL 420 Query: 405 WLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G +A + +T + +++ + GD+V+ KSSN Sbjct: 421 IAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGA 475 >gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] Length = 452 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 201/414 (48%), Gaps = 58/414 (14%) Query: 17 HSIGIVPQGFVNGI-------SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + + + QG +NG+ S DSR+I Q F A+ G +D H F+ A ++GA ++ Sbjct: 7 NEVANICQGRLNGVNTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEEQGAVALL 66 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ ++ +S+ P V D A L + + IA+TGS GKTT KEML Sbjct: 67 VSHEVDSSL-----PQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKTTVKEMLASI 121 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L + A G++NN IGVPLTL R DF + ELG +H EI + T LVRP +A++ Sbjct: 122 LKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIELGANHQNEIAYTTQLVRPDVALV 181 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 IA AHL F IE +A AK EIFEGL++ T N D + L S KT+ S Sbjct: 182 NNIAAAHLEGFGSIEGVAKAKGEIFEGLKENATAIYNLDSNG---LPRWSDLFENKTVLS 238 Query: 250 FGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---- 304 F + N ADF S +E+ G S ++ +G +++++L I+ Sbjct: 239 FSQENNQADFH---------ASNIEINGLGASSFTLNTPVG-----SIVVSLTIIGKHNV 284 Query: 305 --------------ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 AD+ +++L + +G+ L G +ID++YNA+ Sbjct: 285 SNAVAAAALAVQANCTLADIQQGLQSL-----ENVKGRVAVEVLPSG-LKVIDDTYNASV 338 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +MKAA+ +L + G R VLG+M E+G+ S + H ++ E + Y V Sbjct: 339 PAMKAAVDLLGGFN----GSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQV 388 >gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 182/365 (49%), Gaps = 11/365 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85 ++ + D+R + F A+ G DGHDF+L A ++GA +V N + + + Sbjct: 26 LSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQEKIPGDLPNDFGL 85 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L KLA A R IAITGS+GKTT K+++ L+S Y ++NN Sbjct: 86 ILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGKTTVKDIVAHVLASRSPVYKTYKNFNN 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPL+L +M + + ELGM+H GEI L LV+P I+VIT I +H+ F E+ Sbjct: 146 HIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLASLVQPDISVITFIGESHIEYFGTREK 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AKAE+ G + LN D + L+ +H + +Y + ++ AD + + Sbjct: 206 IALAKAELLPHTALDGLVLLNKDSEYLRLI---AHLYPGELMY-YSVNEKADIWAEQIET 261 Query: 266 CSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + +V L G+ E G H N L + I L D + ALS + Sbjct: 262 VEGGTRFKVYLASGEYFEAFLPLHGRHSVLNALPAVAIAKRLGMDTEQIAYALSTV---Q 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R+ + I ++YNA+P SM+AA+ +++ P E RI VLGDM E+G Sbjct: 319 LSAMRFEQINGKHATVYISDAYNASPVSMEAAVRTFAELYP--ECARIVVLGDMYELGPD 376 Query: 385 SQSFH 389 S++ H Sbjct: 377 SRAMH 381 >gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 460 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 30/447 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR + F ++G DGH ++ A GA + +D + + P+ Sbjct: 26 ITSVAFDSRQLDSGALFIPLQGAQ-DGHQYVESAFANGAVATLWASDHDVTT-TEDQPIL 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 VDD L +L +L+ + ++A+TGS GKTTTK+M LS+ + KT+A ++ Sbjct: 84 VVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTKDMTASILSTQLNVTKTHA---NF 140 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + E+GM G++ FL+ LV P AVIT I AH+ F Sbjct: 141 NNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFLSKLVSPDFAVITMIGEAHIEFFGTR 200 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI GL++ GT N D+ LL+ ++ + + + +FG+ DF Sbjct: 201 DKIADAKMEIVHGLKEDGTFIFNGDEP---LLQERAANVEQRKV-TFGRQLTDDFYATSV 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVF 320 Q +V + E +G + N L + + + I A + A+K + + Sbjct: 257 NQHETSIDFKVN-EWPDEEFTIPMVGEYNVNNALAAIAVGKQLHITPAHIKKALKNVEL- 314 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 E R + A QG L D YN+NP + K + + ++ G+RIAVLGDM E Sbjct: 315 --TENRAEWVNGA--QGERILSD-VYNSNPTAAKQVLKTIEELPT--TGKRIAVLGDMLE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR------SIHVHYSETMDGLF 434 +G+ S H LA + I V+L G + L+DAL + +IH + + +D L Sbjct: 368 LGDASARLHASLAANIDPKKIEEVYLVGSEMENLQDALEKQGYPASAIHHYSTAELDKLV 427 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + +Q+++ D+V++K+S+ +++ Sbjct: 428 VDLQATISADDLVLLKASHGIHLEKVL 454 >gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] Length = 459 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 20/374 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S D+RSI P + F + G ++DGH ++ A+Q+GA + T P+ Sbjct: 14 IAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRELPQELADAPLL 73 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +LA + R +I ITGS GKTTTK+M+ L + K + G+ NNH Sbjct: 74 FVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLGTAYKVHKTAGNLNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + D + E+GMS GEI LT++ RP +AVIT I AHL E I Sbjct: 134 IGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIGDAHLLQLGSREGI 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK---TIYSFGKSKNADFQLRKW 263 A AK EI GL G + N D+ LL A+ + + + +FG ++ D+ Sbjct: 194 AKAKLEIAHGLHSGGILLYNGDEP---LLAAELAGMSLPEGTQLQTFGLGESNDWSAADI 250 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI---VSILTADVDTAIKAL 317 + + S V+ +G+ + I G H N L + I I ++ + L Sbjct: 251 EVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISEENIRNGLIGL 310 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + G R + +++++YNANP +++AAI ++ Q+S G R+ VLGD Sbjct: 311 EL------TGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLS--GFRRKWIVLGD 362 Query: 378 MCEMGELSQSFHID 391 M E+G +S H + Sbjct: 363 MRELGPEEESLHFE 376 >gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 484 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 131/412 (31%), Positives = 201/412 (48%), Gaps = 13/412 (3%) Query: 48 GPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 G YD L V Q+GA VV+ D + + + V+ D AL +L AAR + Sbjct: 60 GRGYDKDRESLQRVKQRGARAVVL--DAIPAEVPEGLSVYLAPDTSLALAQLGQAARALA 117 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 ++ +TG+VGK+TTK L I L+ +T+ ++N++ GV LTLA P D +F + E Sbjct: 118 SHPLVCVTGTVGKSTTKRGLAILLARCGRTHESQRNFNHYHGVTLTLADTPKDTEFSVLE 177 Query: 167 LGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 S L L+ P +AVIT I H + +E IA K+ +F GL+ GT L Sbjct: 178 FS-SDLPRYTLPKALIAAPDVAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVL 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--W-MEVQLQGKSME 282 N D +F + A + + G + +FG S AD L + CS Q W + + +S+ Sbjct: 237 NRDSPYFARMHAAARSYGAARVLTFGCSPLADVAL---QDCSRQRSGWQVRARCLDQSLT 293 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G H +N L L V L D + + A S P A+ G LI Sbjct: 294 YTLPLPGRHDVRNSLAMLAGVVALGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLI 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+S+++NPAS++AA+ L+ + GRR+ VLG + E+GE S + H LA+++ L+ I Sbjct: 354 DDSFSSNPASLRAALETLALQAEGSPGRRLLVLGAIDELGERSDALHASLADLILLHRID 413 Query: 403 HVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 V+ G H ALP + +H +E + L + + L D +V+K S Sbjct: 414 RVYAYGSHTRHTCAALPDHLVALHTTEARE-LTQVLMADLQPDDWLVLKFSR 464 >gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio harveyi ATCC BAA-1116] gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116] Length = 454 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 216/448 (48%), Gaps = 23/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+RSI F A+ G +D HDF AV+ GAG ++V + ++ + + Sbjct: 24 IESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQKRVNVNVPQVVVG-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL ++A + +AITGS GKTT KEM+ L K G++NN Sbjct: 82 ---DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSK-NADFQLRK-- 262 AK EI++GL G +N D + AK L K + +F +S +ADF Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----GAKWDEVLADKNVITFSQSNADADFYASNIV 254 Query: 263 WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 E S+ + + + +E+ IG H N + I + A ++ L + Sbjct: 255 MSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALKMGATLEEIRSGLKHLN 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + LID+SYNA+ +MKAA+ +L+ +G+R +LG+M E+ Sbjct: 315 KVKGRVEVEELSDK---IKLIDDSYNASVPAMKAAVDLLAAF----QGQRWLILGNMAEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSS 440 GE S + H + E + HV G + + L IH + E +D + + + Sbjct: 368 GEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQA 426 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + ++VK +N + + L E + Sbjct: 427 VPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] Length = 470 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] Length = 474 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/383 (31%), Positives = 179/383 (46%), Gaps = 46/383 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIG 79 P + G+S D+R++ P F A+KG +DGHD + A GA +V N D Sbjct: 21 PDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGAAAAIVSHLNPD------ 74 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + +P V+D L AL L R + +IAITGS GKTT K++L + T A Sbjct: 75 -IDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQLLASICAQAGPTLAT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +G+ NN IGVPLTL + D+D F + E+G +HLGEI LT L RP + +IT AH+ Sbjct: 134 LGNLNNDIGVPLTLLSLS-DIDQFAVIEMGANHLGEIARLTALARPDVGLITMAGTAHVG 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F ++ I K E+F GL +N D + G ++ G ++ F Sbjct: 193 EFGSVDAIVQGKGELFVGLVPEAQAVINLD------------SYGADRWWAMGSAQRNGF 240 Query: 259 QLRKWKQCSEQSWM-EVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSIL 306 L + W E + + + +G G H A N+L + + Sbjct: 241 TLNNDPRA---RWTGEYNATTERLTIFENGQLLIESQPLPLPGAHNATNLLAAVAVARTA 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + L+ F P GR C+ T+I+++YNANP SM AA+ L Sbjct: 298 GFSKEIILAGLNSFTPPAGRMSLVACSEQ---LTVINDTYNANPESMCAALDYLV----G 350 Query: 367 GEGRRIAVLGDMCEMGELSQSFH 389 G +AVLGDM E+G+LS + H Sbjct: 351 RPGLHLAVLGDMGELGDLSAALH 373 >gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/456 (30%), Positives = 218/456 (47%), Gaps = 44/456 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ID+R + P F A+KG +DGHDF AV GAG ++V+ ++ ++ P Sbjct: 25 ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLL-----VAAPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN Sbjct: 80 VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNND 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + + Sbjct: 140 IGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGV 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLR 261 A AK EIF GL GT +N D + + + H K ++ F +++ DF +R Sbjct: 200 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFAPLGAEDIDFFASDVR 256 Query: 262 KWKQCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 Q + + +E+ L G+ H+ A + M++G + T Sbjct: 257 ITPQVTHFTLHSPFGTVGIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQ 311 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + A+ G+ + L G L+D+SYNAN SM AA VL+++ G R+ Sbjct: 312 LPAVP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 V+GDM E+GE + H + E I V G L DA H T+ Sbjct: 359 VVGDMGELGETAVDCHRQVGEAAQQAGIDKVLSVGTLSQTLSDASGCGEHFQDKNTLAAR 418 Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ ++ V++K S S ++ L E+ Sbjct: 419 VSELLLEHPVI---TVLIKGSRSAAMENVVRALQEK 451 >gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 482 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 128/422 (30%), Positives = 202/422 (47%), Gaps = 31/422 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + ++G G Q +G IDSR + E FFA+ G DGHD+I A QK Sbjct: 1 MWDSQRIADLVRGELTGD-SQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQK 59 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA +V+ + + + +P + V+ L A+ LA A R A ++AITGS GK Sbjct: 60 GASVVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS +T+ + + NN +G+P+T+ + + + I E+GM LG+I FL Sbjct: 120 TTTKDMVAAVLSEKYRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLC 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---------- 229 + P I VIT I H+ E IA AK E+ E L +TG+ LN +D Sbjct: 180 DIACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVKQAEHD 239 Query: 230 ---SFFELLKAKSHA--LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +FF L+ + H L +++ FG + FQ + + S+ V Sbjct: 240 SHRTFFYGLEGRFHEPDLRGRSLTPFG-TLGTCFQAEMGHGDRSLVPLGEKQAASSVTVR 298 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLI 342 G H + L L + +L ++ + L+ R R L G TLI Sbjct: 299 LPLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELS-----RMRLELQPGPGGSTLI 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + YNANP SMKA++ VL + G +A+LG+M E+G+ ++ H ++ + ++ IS Sbjct: 354 SDVYNANPTSMKASLQVLKE---RGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGIS 410 Query: 403 HV 404 + Sbjct: 411 EL 412 >gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes Clip81459] gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 457 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ + PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455 >gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] Length = 447 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ + PV Sbjct: 16 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 73 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 74 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 134 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 194 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 249 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 301 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 302 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 360 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 361 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 420 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 421 MNGNEWILVKGSYGMGLKDVVENLI 445 >gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] Length = 460 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 33/380 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I + F A+KG +D HDF A + GA ++V+ + + +P Sbjct: 24 IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAKALLVSKPL-----PVELPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL + A L+++ T +A+TGS GKTT KEM L++ + A Sbjct: 79 VVSDTRIALGMMG--AWLKAQMTEKYGLQTVALTGSCGKTTVKEMSAAILANKGQVLATA 136 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IG PLTL R+ + + + ELG +H EI + T+LV+P++A+I IA AHL F Sbjct: 137 GNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEISYTTNLVKPNVALINNIAAAHLEGF 196 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 ++ +A AK EIFEGL + GT +N D + ++ L A L T S AD Sbjct: 197 GSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADHQVLTFST-----DSHQAD 251 Query: 258 FQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + + K ++ + GK +++ G H N L + L A + Sbjct: 252 YFAEEIKITTQGLACFTMCTPIGK-IDINLALAGIHNVSNALAAAALTVSLGATLADVKA 310 Query: 316 ALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L +GR CA LID++YNA+ A++KAAI VL+ EG+R + Sbjct: 311 GLETMANVKGRLDITEPCA----GLRLIDDTYNASVAAVKAAIDVLASF----EGKRYFI 362 Query: 375 LGDMCEMGELSQSFHIDLAE 394 GDM E+GE S + H ++ E Sbjct: 363 FGDMAELGEESDNLHREVGE 382 >gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica W22703] Length = 454 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 218/456 (47%), Gaps = 44/456 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ID+R + P F A+KG +DGHDF AV GAG ++V+ ++ + P Sbjct: 25 ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLL-----VEAPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN Sbjct: 80 VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTSGNFNND 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + + Sbjct: 140 IGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGV 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 A AK EIF GL GT +N D + + + H K ++ F +++ DF + Sbjct: 200 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHGAEDIDFFASDVR 256 Query: 265 QCSEQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + ++ +E+ L G+ H+ A + M++G + T Sbjct: 257 ITPKTTYFTLHSPLGTVAIELPLPGR-----HNIANALAAAALAMSVGASLAAVREGLTQ 311 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++A+ G+ + L G L+D+SYNAN SM AA VL+++ G R+ Sbjct: 312 LQAVP--------GRLFPIELAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 V+GDM E+GE + H + E I+ V G L DA H T+ Sbjct: 359 VVGDMGELGETAVDCHRQVGEAAKQAGINKVLSVGALSQTLSDASGCGEHFQDKNTLAAR 418 Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ ++ V++K S S ++ L E+ Sbjct: 419 VSELLLEHPVI---TVLIKGSRSAAMENVVRALQEK 451 >gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 213/457 (46%), Gaps = 39/457 (8%) Query: 24 QGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + F+N ISIDSR+I + F AIKG +DGH F+ ++KG VV+ M S+ + Sbjct: 23 EDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGVKSVVIKKGMQKSL-PI 81 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P + V+D L A KLA+ R + I+AITGSVGKTTTKEM+ L + + Sbjct: 82 DFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMMGEVLKKLGRIKLSYS 141 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN IGV LT+ V+ + E+GM LG+I L+ P IAVIT I AH+ Sbjct: 142 NFNNEIGVGLTILDTDVEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLG 201 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSFGKSKNA 256 + I AK EI + L G + + +DS E K + + + I + + Sbjct: 202 SKKNITYAKCEISKFLNPKGVVIIPANDSLLEETLKEFWKGRVIKVELLNIENQNERFKK 261 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 D LR + S ++ + +Q + E+ G+H A N L G+ L D + K Sbjct: 262 DDNLRGFYNPSNKT---ISIQENTFEISFG--GFHNASNFLFAYGVAKELGIDFSSFNKF 316 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F GR K + T+ DESYNA+P S+KA I L + P + + G Sbjct: 317 --NFASLGGRNKILKSVKT----TIYDESYNASPESVKACIKTLLE-KPRNQ---FFIFG 366 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE S+ +H E+ +L N S + L + D I+ +Y + + Sbjct: 367 SMQELGEESEKYH---KEIFNLINNSDIE----KCLFICDKKNERIYANYLKDNKKFLVL 419 Query: 437 ---------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I S GD +++K S ++I L+ Sbjct: 420 NNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 457 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGAKLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 207/461 (44%), Gaps = 51/461 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ D+R ++P + F A+ G +DGH+F+ A GA VV+ + + + + Sbjct: 24 VTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSRRVASPLAQIE---- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LA AAR ++A+TG+ GKTT KEML LS + T A G+ NN Sbjct: 80 -VADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSRVHPTLATRGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG P TL + + ELG +HLGEI + T L P +AVIT + AH+ F GI I Sbjct: 139 IGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAIPDVAVITNVTGAHVGEFGGIGRI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AKAEI GL +GT LN DD F+ + + + G + FG A + C Sbjct: 199 AQAKAEILLGLSASGTAVLNRDDRFYPMWRELA---GDAEVLDFGLDPAARVRAEALA-C 254 Query: 267 SEQSWMEVQL--QGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + L G S+ V +G + +N L + L + + L Sbjct: 255 DDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAAAAWALRVPAEDIVAGLEACRTM 314 Query: 324 EG--------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 G RG R L+D++YNANP +++AA++VL+++ R L Sbjct: 315 PGRMMNVPGIRGTR-----------LLDDTYNANPGAVRAALAVLAEMPAP----RWCFL 359 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------RSIHVHYSE 428 G + E+G S+ H DL V I + G DA P R H + Sbjct: 360 GALGELGAESERLHADLGRVARELKIDFLGTFG------ADARPAVAAFGDRGCHF---D 410 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 L + L G V+VK S S G RLI L + P Sbjct: 411 DWAALVRYAHDHLPPGASVLVKGSRSAGMERLIADLRTDAP 451 >gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 453 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 215/473 (45%), Gaps = 36/473 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + I + DSR IA + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AVVTLTEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E ++ Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----AYLPAD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLIERKDSLTFNANFLE---QDLDLPVT----GKYNATNA-MIAA 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIRL--AFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AIPANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HV Y + + L ++ SL D +++K SNS +L+ L+ Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLM 453 >gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] Length = 470 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ + PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PMDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468 >gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 184/371 (49%), Gaps = 34/371 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + +DSR +AP F A+ G DGHDFI A ++GA +V D G +PV Sbjct: 24 VGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAAAALVERD-----GDWPLPVV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL L A R R A ++ +TGS GKTT KEM+ L+ T A G+ NN Sbjct: 79 RVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKEMIAAILARRGATLATRGNLNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL R+ + + + E+G + GEI LT + P +AVIT PAHL F + + Sbjct: 139 LGVPLTLLRLDREHRYAVIEMGANAPGEIARLTAIAAPEVAVITNAGPAHLEGFGDLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 A AK E+F GL G +N DD +++ L +G + FG+ +AD + Sbjct: 199 ARAKGELFLGLPDAGVAVVNADDPQAPTWYAL-------VGDRRCLRFGRGADADVRA-- 249 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN---MLMTLGIVSILTADVDTAIKALSV 319 + E+Q+ G V G H N + + D+ ++A S Sbjct: 250 -TAETAGGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAVALEVPLGDIVAGLEACSG 308 Query: 320 FHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + + R R C ++D++YNANPAS++AA+ VL+ + HGE R VLGDM Sbjct: 309 VAGRLQWRTGREDC-------RILDDTYNANPASLQAALDVLA--AEHGE--RWLVLGDM 357 Query: 379 CEMGELSQSFH 389 E+G +++ H Sbjct: 358 GELGAGAEALH 368 >gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Haemophilus influenzae F3031] gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3031] Length = 457 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] Length = 463 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 144/482 (29%), Positives = 226/482 (46%), Gaps = 80/482 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ DSR + + F AIKG DGHD+I AV +GA +V++ I S+ Sbjct: 26 VGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAVSRGAQALVLSRTPSIQIPE-SVLAL 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD + AL KLA R + A I ITGSVGKT+TKE+ LS T SYNN Sbjct: 85 EVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTSTKEVTASILSRKFVTLRSQKSYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL + +V+ + E+G ++ +GEI +L + +P I V+ + AH+ +E Sbjct: 145 IGLPLTLLGLTPEVEVAVLEMGGAYRMGEIEYLCSIAKPFIGVVIVVGYAHIGRMGSLER 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKW 263 IA K+E+ L G LN DD + + K+H + W Sbjct: 205 IAENKSELVRSLPSEGFAILNRDDHRVKAMADVTKAHVV--------------------W 244 Query: 264 KQCSEQSWME---------------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 E+S++ + + +S +V +G H +L ++ + ++ Sbjct: 245 YGLDEESYIRATDVVSEGLNGIRFVLHIGDRSYQVKAPLLGRHSVHTILASVAVAHVMGM 304 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPH 366 + + A+ P R +N+G T++D++YNANP SM AA+++L+ I Sbjct: 305 EDQEIVHAIKELPPG------LRLIVNKGINGSTILDDTYNANPTSMLAALNLLNDI--- 355 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDL----AEVLS-LYNISHV-----------WLSGFH 410 EG RIAVLGDM E+G ++ H+ + AEV LY + + ++ Sbjct: 356 -EGHRIAVLGDMAELGHFTEEGHLKVGARAAEVCDKLYTVGELAQIIARGALQAGMNPGD 414 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V+ LKD Y E +D ++ L +GDVV+VK+S +L+ L + Sbjct: 415 VVTLKD---------YQEAID----VLKRDLHEGDVVLVKASRIVSLDKLVAALTVQNEV 461 Query: 471 IQ 472 +Q Sbjct: 462 VQ 463 >gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 224/469 (47%), Gaps = 23/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + D+++A +G + + +S DS SI F I G D H FI A+ G Sbjct: 4 FYVRDIVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAITGSVGKTT 121 A + V+ ++ G+ +P V + AL ++ + K I I +TGSVGKTT Sbjct: 64 A-VAVLTSEHDEMTGN--VPYIRVSNTTMALQEIG---KYYGKLMIMPKIGVTGSVGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ ALS+ K + G+ N+ IGVPLTL +M D + E+GMS GE+ L+ L Sbjct: 118 TKEMIACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSEL 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSH 240 V AVIT I +H+ + I K I + + K G +F+N DD+ K++ Sbjct: 178 VELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSELR 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299 I +FG + D+ K + V ++ K S + + +G H +N L+ Sbjct: 238 ----HRIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALVA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +V AIKAL+ + EG R + G T+ID+SYNA+P SMKA I V Sbjct: 294 IAVAERHGIEVTEAIKALAGY---EGVSMRQQITDVNG-VTIIDDSYNASPDSMKAGIDV 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + + GR+IAVL DM E+G+ S +H ++ ++ I + L G + D Sbjct: 350 LCDYNNN--GRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFGTMAANIGDGFN 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 S + + + + ++ +L GD ++ K S ++ L E + Sbjct: 408 GSYKLF--KKREEINEYLLKNLKSGDAILFKGSRGMKLNECVDFLKENY 454 >gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 129/419 (30%), Positives = 194/419 (46%), Gaps = 22/419 (5%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D HDF+ G + +V + I L Sbjct: 32 IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + S+ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E I AK+EI+ + G + D F + + A I T G D +L Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDVEL 266 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + S V G H QN + + ++ ++ L Sbjct: 267 -----LPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGL--- 318 Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 ++ +G + R + + + ID++YNANP SM+AA VL Q +G ++ V+GD+ Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIG 372 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437 E+G+ S H DL L+ + H+ G F AL+ A S V +T F+ Sbjct: 373 ELGDSSWQEHYDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEALPFL 431 >gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. K] gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. K] Length = 468 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 219/468 (46%), Gaps = 12/468 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A +G +G P V G+S D+R+++P + F A+KG +D HD + A Sbjct: 7 TPQFTPDELAAATRGRWLG-APPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + P V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSEAWAAAHPAPPRPALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL ++ +A AKAE++EGL G +N DD+ +LK + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242 Query: 242 LGIKTI-YSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + ++ G+ + D L Q E + + + + V G+ Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +I D I + L+ P G+R R L+D+ YNANPASM AA+ Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALD 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416 VL ++ R AVLGDM E+G H L + ++ + G A Sbjct: 360 VLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAA 419 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++E +D L F++ L DV++VK S RL+ L Sbjct: 420 GAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467 >gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 473 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 132/451 (29%), Positives = 200/451 (44%), Gaps = 34/451 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFG 87 GI D+R+ + F A+KG +D H+F+ AV++GA GL+V + + + Sbjct: 27 GIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGASGLLVHEENALIEKLKDKATILL 86 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L AL KL AR S A I+ ITGS GKTTTKE + S + GS+NNH Sbjct: 87 VPDTLKALQKLGNWARHESSARIVGITGSNGKTTTKEFTAALVGSSMDVHYNKGSFNNHW 146 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVP TL ++P + D I E+GM+H GEI L H+ P + V T + AH+ F IE++A Sbjct: 147 GVPFTLLQLPPNKDVAIIEMGMNHAGEITELVHIAEPDVVVCTMVGRAHMEFFGTIEKVA 206 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI+E N D++ ++H + +K F K++ F S Sbjct: 207 EAKEEIYEAAGDQTVRIYNLDNT-------QTHNMYVKARDKFPKARILTF-------SS 252 Query: 268 EQSWMEVQLQGKSMEV----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E +V L SM + + IG + G ++ ++ P Sbjct: 253 EDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLMAAASVGLAVGMTPA 312 Query: 324 EGRGKRYRCALNQGFFTLID---------ESYNANPASMKAAISVLSQISPHGEGRRIAV 374 + C N G L+ ++YNANP SMKA I + ++ GR++ V Sbjct: 313 QVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNMKLLTV--PGRKVGV 370 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETM 430 G M E+G S + H +L + V+ G A L +++ + + Sbjct: 371 FGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDADAFAKGLSSAGYKNLALIEKDYK 430 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 D + L GD+ VVK+S R + Sbjct: 431 DSSGQDLAGFLKTGDIAVVKASRGTKLERFV 461 >gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] Length = 452 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 219/446 (49%), Gaps = 25/446 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKAGGAGALLVSRPL-----DCDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMAAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + DF + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQ 265 A AK EI+ GL + G +N D++ + L +S +G + ++ F + ++DF Sbjct: 199 AKAKGEIYSGLPENGIAIMNADNN--DWLNWQS-VIGDRKVWRFSANAADSDFTATNVHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 S + +Q S++V+ G H N L + A + AIKA L+ Sbjct: 256 TSHGTEFTLQTPVGSIDVLLPLPGRHNIANALAAASLSMAAGAPL-AAIKAGLANLKAVP 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + A NQ L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G Sbjct: 315 GRLFPVQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAE 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S++ H+ + I V +G A+ +A + H+++ + +LV+ Sbjct: 368 SEACHLQVGNAAKAAGIDRVLSTGKLSQAISEA--SGVGEHFADKT--ALIARLKALVEE 423 Query: 445 D---VVVVKSSNSCGFYRLINLLLEE 467 ++VK S S ++ L E+ Sbjct: 424 QQMITILVKGSRSAAMEEVVRALQEK 449 >gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK115] Length = 456 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SEHPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKIVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTCLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + + ++ A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIASYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 35/444 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 IS D+R I P FFA+KG +D + F A+ GA V+ N D ++S V Sbjct: 16 ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNGDY-----NVSQKCILV 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DDVL L LA R + + +TGS GKTTTKE++ LS TYA G+ NNHIG Sbjct: 71 DDVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ + V+ + E+G +H EI L + +P +IT + AHL F G E + Sbjct: 131 VPLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGGAEGVKK 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKS------KNADFQL 260 K E+++ L+ + G IF+N D + A+ ++ S G + +N+ + Sbjct: 191 GKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDIGNNISGELLENSPYLK 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK +++ VQ Q G + N+L + I D LS + Sbjct: 251 LRWK-IKNEAYHTVQSQ---------LTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGY 300 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + + A N TLI + YNANP+SM AI + ++ GR++ +LGDM E Sbjct: 301 QPHNNRSQIVKTASN----TLICDYYNANPSSMFVAIENIGKLPA---GRKVVILGDMFE 353 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +GE S H + + I G + + + Y D + F +S Sbjct: 354 LGEESAVEHESVIQKAMQTAIDERIFIGAEFYKQSELVNATF---YRSVEDAIGAF-KSR 409 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 V +++K S RL++L Sbjct: 410 PVKNATILIKGSRGMALERLVDLF 433 >gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 455 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 135/456 (29%), Positives = 209/456 (45%), Gaps = 41/456 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N DSR IA + F +KG DGHDFI A + GA L + ++ S P Sbjct: 26 LNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFENGAALTLSEKEVA------SHPYI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDVL A LA ++ + A+TGS GKTTTK+ML LS+ KTY G+YNN Sbjct: 79 LVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTNYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+G HLG+I L+ L P A++T I AHL+ F EI Sbjct: 139 IGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLIGEAHLAFFKDRSEI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKW 263 A K +I +G+ + G + D L K + FG+ D RK Sbjct: 199 AKGKLQIVDGMPEGGLLLAPSDSIVDSYLPTKQQ------VVRFGQGAELEVTDLVERKD 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVF 320 + +++E Q + V G + A N ++ + + + A + L + Sbjct: 253 SLTFKTNFLE---QALDLPVT----GKYNATNAMIASYVALQEGVPEEQIHQAFQNLELT 305 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + ++ A N ++ + YNANP +MK + S I + G+++AVL DM E Sbjct: 306 RNR----TEWKKATNGA--DILSDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKE 359 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMD 431 +G+ S H + LS + V G + L + HV+Y + + Sbjct: 360 LGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIGHVYYFKKTADEDQFE 419 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ SL D +++K SNS +L+ L E+ Sbjct: 420 AMTKQVKESLGAHDQILLKGSNSMNLAKLVESLQED 455 >gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 265 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 135/234 (57%), Gaps = 2/234 (0%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++I+S+ + + FFAIKG + DGH F+ ++K + ++VV + +L Sbjct: 23 INNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLH-KFI 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + +L A RL S+ + ITGS GKTT K ML+ L KT++ S+NNH Sbjct: 82 KVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSFFLEQYGKTFSSPKSFNNH 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 G+PL+L+ P + F IFELGMS EI L+ ++RP I VIT I PAHL NF ++ + Sbjct: 142 FGLPLSLSNTPKNSQFNIFELGMSSSREIDKLSQILRPDIGVITNIGPAHLKNFKNLKAV 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 AKAEI +++ G I LN DD +F L ++ +K I +F KSK A+ QL Sbjct: 202 CLAKAEIMNHIQENGYIVLNKDDFYFNTLFKIANNKKLKII-TFSKSKKANVQL 254 >gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] Length = 456 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 214/443 (48%), Gaps = 33/443 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + + + P VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEA------PYILVDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 KAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR 331 E + +++ G + A N M ++ +TAI +A S R + ++ Sbjct: 257 ECNFLEQRIDL--PVTGKYNATNA-MIAAYAALQEGVSETAIAQAFSKLELTRNRTE-WK 312 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGS 370 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441 + L+ ++ ++L G + AL D + I+ VHY + + L ++ SL Sbjct: 371 MITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGRVHYFVKNDEKDQFEQLTKAVRESL 429 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 430 TPADQILLKGSNSMNLAKLVEDL 452 >gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB056] gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB058] gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB059] gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] Length = 466 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 140/449 (31%), Positives = 206/449 (45%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ V G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL QG S + G H QN + L Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSFVRLPFA-GEHNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R Q L ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKTPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] Length = 464 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 139/479 (29%), Positives = 227/479 (47%), Gaps = 57/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +F +++ A+ G I +S D+R I ++ F A+KG ++G+ + A KG Sbjct: 4 MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKG 63 Query: 65 AGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A + +V D V + I + V V D AL LA + + +I ITGS GKT Sbjct: 64 ASICIV--DEVYFKKSEINECT-SVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+++T LS+ K + G+ NN IG+P + R+ D + E+GM++ GEI + Sbjct: 121 TTKDLITSVLSAKFKVFKTEGNLNNQIGLPHMIFRLNNSYDVAVLEMGMNNRGEIHSMAK 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RP IAVIT + AH+ N E I +AK EI + K T+ +N D+ LK Sbjct: 181 AARPDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVINSDNDMLSNLKEDRF 240 Query: 241 ALGIKTIYSFGKSKNA-----DFQLRK----WKQCSEQSWME----VQLQGKSMEVVHHG 287 I G +N+ D ++++ + C ME V + GK V++ Sbjct: 241 -----NIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGK-YNVLNSL 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + + + MT G + +++T + + +GK+ F +I++SYN Sbjct: 295 LAVACGRILNMTYGEIREGLKNIETTAMRMEIC-----KGKK---------FNVINDSYN 340 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---------VLSL 398 ANP SMKAAI VL RR+AVLG M E+G+ S H ++ + +++L Sbjct: 341 ANPESMKAAIDVLKNFKSK---RRVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIAL 397 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + + GF V K+ S Y+ET++ ++ +V+GD V++K+S F Sbjct: 398 GEYAEDFKRGFQVTN-KNGKCISFDT-YAETLE---FLLKKCIVEGDTVLIKASRVMKF 451 >gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 466 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 226/457 (49%), Gaps = 41/457 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGS 80 + ++ S + F ++G + DGH+FI A+ +GA +V D + + Sbjct: 30 ITTVTTASTEVEKNSLFIPLRG-NRDGHEFIGDALSRGASYFLVEEDHPIRKNFDSKERA 88 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +IPV D L +L KLA R R +IA+TGS GKTTTKE+L L ++++ + Sbjct: 89 KAIPV---KDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPVLVV 145 Query: 141 --GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +YNN IG+P TL R+ + ELGM+H GEI LT + +P A+ITTI AH+ Sbjct: 146 TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIAKPDFALITTIGTAHIE 205 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + IA AK E+ EGL K G +F + ++LK+ G + I N F Sbjct: 206 FLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHGSRLILV---KPNHIF 262 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + L+ + E+ + GY + +N+ + + + + + +K +S Sbjct: 263 SVLQKRPSG------FLLEYRDKEIEWNLPGYKLLENLAIAIACLETVGVPTEWILKGIS 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGD 377 F + R L +G +++I+++YNAN SM +++ V Q++ +G+ VLGD Sbjct: 317 TFKSVDK-----RLNLQKGKYSIINDTYNANYESMLSSLEVTDQLA---DGKEFYVVLGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKD------ALPRSIHVHYSETM 430 M E+G+ SQ FH +L + S + N+ ++ G L +++ PR H++ T Sbjct: 369 MKELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVKRTTFPR-FSEHFAGTE 427 Query: 431 DGLFLFIQS---SLVDGDVVVVKSSNSCGFYRLINLL 464 +GL ++ ++ G +V+ K+S R ++ L Sbjct: 428 EGLVKLVRKFSQTVPKGSIVLAKASRGIQLERFVDSL 464 >gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] Length = 455 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 133/438 (30%), Positives = 217/438 (49%), Gaps = 37/438 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLS 82 Q F +S D+R+I F +KG ++GHD++ A++ GA + V + Sbjct: 21 QSFT-AVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEGQPVPAALPDD 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ++ V D L AL ++A A R++ +I ITGS GKTTTK++L LS +TY G+ Sbjct: 80 FQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNHIG+PLT+ MP + I E+GMS GEI L+ + +P +A++T I +H+ Sbjct: 140 YNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIAKPDLAIVTNIGESHMEQLGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 IA AK EI EGL G +F++ D+ + K S I G + +AD + Sbjct: 200 RAGIAKAKMEIKEGLSPAGFLFIDSDEPLLDGWKQSS-------IMRVGFN-HADILVEN 251 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---ILTADVDTAIKALSV 319 + + ++G E+ +G H +N + + ++T+ + T ++ +S+ Sbjct: 252 VAATVD--GYQFDIEGHHFELSL--LGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQISL 307 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + + N+G +++++YNA+P SM AAI L I P E +R+ VLGDM Sbjct: 308 -----TSMRLEKLTGNKGEL-IVNDAYNASPTSMIAAIDALKAI-PSYE-KRVVVLGDMF 359 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ- 438 E+G ++ H +A+V++ I+HV G K + H+ S T D + F Sbjct: 360 ELGTEEEALHKSVAQVIT-PPITHVLTLGDRA---KWIYEEASHISSSSTFDEMAHFTTK 415 Query: 439 -------SSLVDGDVVVV 449 S LVD V++ Sbjct: 416 QELADHLSKLVDQKTVIL 433 >gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 457 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 133/431 (30%), Positives = 211/431 (48%), Gaps = 35/431 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P V Sbjct: 28 INTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQLVVK 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145 D AL +LA R + +A+TGS GKTT KEM L + G++NN Sbjct: 84 DTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGNFNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F + Sbjct: 144 DIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263 + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ ++ Sbjct: 204 VVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSVKNV 255 Query: 264 KQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318 Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ S Sbjct: 256 -QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRS 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + +G+ + + L+D++YNAN S+ AAI VL + I + DM Sbjct: 314 -----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCVADM 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+GE S + H ++ + ++L N+ V G + +A+ +E +D L I+ Sbjct: 364 KELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVPLIE 423 Query: 439 SSLVDGDVVVV 449 + L VVV Sbjct: 424 NQLQQNKKVVV 434 >gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 468 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 218/468 (46%), Gaps = 12/468 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A +G +G P V G+S D+R+++P + F A+KG +D HD + A Sbjct: 7 TPQFTPDELAGATRGRWLG-APPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL ++ +A AKAE++EGL G +N DD+ +LK + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA--RMLK-RGVA 242 Query: 242 LGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMT 299 G + + ++ G+ + D + + S + V G VH G+ Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 300 LGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +I D I + L+ P G+R R L+D+ YNANPASM AA+ Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPV---GRRLRLERLPSGVQLVDDCYNANPASMSAALD 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD 416 VL ++ R AVLGDM E+G H L + ++ + G A Sbjct: 360 VLRDLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAA 419 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++E +D L F++ L DV++VK S RL+ L Sbjct: 420 GAAGLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEAL 467 >gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 428 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 129/434 (29%), Positives = 204/434 (47%), Gaps = 27/434 (6%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD---------MVASIGSLSIPVFGVDDVLG 93 F A+ G +DGHDF+ A+Q G+ VV+ D ++A G ++ V D + Sbjct: 2 FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61 Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +LA R ++A+TGS GKTTT+E++ L+ + A G+ NN +GVPLTL Sbjct: 62 AYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLTL 121 Query: 154 ARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 R+ D D + E+GM LGEI L+ +P +AVIT I AH+ E IA AK E Sbjct: 122 LRL-TDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKCE 180 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I L+ G + + D + A + I G A+ W + + Sbjct: 181 ITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEA---DWVGQEDPAAG 237 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 V + G ++ + G H A+N+++ L + L + ++ L V P GR +R Sbjct: 238 SVVVDGVAVPLPLE--GRHHARNLMLALAVARHLGVGPER-LQQLHVALPG-GRSRR--- 290 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 L G L+DE+YNA+P ++ A++ +L+ GRR AVLG M E+G+ S + H + Sbjct: 291 -LAVGGIRLLDETYNASPEAVLASLELLAT---QAGGRRYAVLGTMLELGDKSLALHRRV 346 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVK 450 A ++ + + A + + + + +Q L GD V++K Sbjct: 347 ARRAIELDLDGLLIVDGGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWLAPGDTVLLK 406 Query: 451 SSNSCGFYRLINLL 464 +S S RLI LL Sbjct: 407 ASRSVALERLIPLL 420 >gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 135/444 (30%), Positives = 210/444 (47%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KE LS T G+ NN Sbjct: 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEXTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL + G N D++ + L +S +G + ++ F + N+DF Sbjct: 199 AKAKGEIFSGLPENGIAIXNADNN--DWLNWQS-VIGSRKVWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q S++V+ G H N L + + A +D L+ G Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A NQ L+D+SYNAN S AA+ VL++ G R+ V+GD E+G S Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSXTAAVQVLAEXP----GYRVLVVGDXAELGAES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLV 442 ++ H+ + E I V G A+ A + H+++ + L L I V Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 ++VK S S ++ L E Sbjct: 427 --ITILVKGSRSAAXEEVVRALQE 448 >gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] Length = 456 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 128/444 (28%), Positives = 217/444 (48%), Gaps = 17/444 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I F + + DGH ++ A+ GA + D +I SI V Sbjct: 25 ITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAVATLWQEDHSENIPD-SIAVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +L ++ ++AITGS GKTTTK+M L++ + ++NN Sbjct: 83 PVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ FL+ L P +AVIT I AH+ F + I Sbjct: 143 IGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G + +N D+ LL K+ + + + +FG N D Sbjct: 203 ADAKMEITHGLKEDGELVINGDEP---LLTTKAKEVS-QEVLTFGSLDNNDMCAMDIVSD 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ +V ++ + IG + N L L + +I VD KAL+ F R Sbjct: 259 ATKTSFKVA-TWPEVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANR 317 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++ + YN+NP ++K + Q+ EG+RI VLGDM E+GE + Sbjct: 318 TEWLEA---KNGAKILSDVYNSNPTAVKEVLYAFEQVPT--EGKRIIVLGDMLELGEKAA 372 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLF--IQSSL 441 H +LA+ ++ I V+L G + L + L +H+ + D L L +++ L Sbjct: 373 EMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNEL 432 Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465 + D+V++K+S+ +++ L+ Sbjct: 433 MSDDIVLLKASHGIHLENVVSELI 456 >gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii TCDC-AB0715] gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] Length = 466 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 205/449 (45%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ G + +V + A I L Sbjct: 32 IPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL QG S V G H QN + L Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSF-VRLPFAGEHNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R L + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFLQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 504 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 30/444 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSRS F A+KG +DG+ F A+QKG VV+ A G + VD Sbjct: 82 VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAGDARFIL--VD 139 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA A R R +I ITG+ GKTT+KE+++ LS +A +YNN +GV Sbjct: 140 DALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNNDVGV 199 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + D + E+G SH G+I L V P +IT + AHL F E + Sbjct: 200 PRTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNVGRAHLQGFGSFEGVKRT 259 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ G +FLN ++ + + I ++G+ AD Q + C+ Sbjct: 260 KGELYDFLKAHGGLLFLNESNADLTEMAEQRE---FDRIVTYGQDSTADVQ-GQVVSCAP 315 Query: 268 --EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + +W + Q + EV +G + NML + + AL + P Sbjct: 316 FLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVTAQQVNHALENYIP 375 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCE 380 + R + A N+ LI ++YNANP+SM AAI L Q+ ++A+LGDM E Sbjct: 376 RNNRSQLTETAHNR----LIVDAYNANPSSMSAAIENFRLMQVE-----NKMAILGDMRE 426 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +GE S H + L I VWL G + A + V + I+ Sbjct: 427 LGEASGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRKFRDVEEVKAE------IERR 480 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 +G +++K SN + L LL Sbjct: 481 RPEGHYILIKGSNGIKLFELPALL 504 >gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] Length = 464 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 218/443 (49%), Gaps = 26/443 (5%) Query: 27 VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +NG + IDSR+I+ + F A G +DGH+F+ A Q GA L +V + + +P Sbjct: 28 INGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIV-----TRVQEIDLPQ 82 Query: 86 FGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V +V A++ +A +L R T+I ITGS GKTTTK +L LS T A G+ Sbjct: 83 LLVGNVTEAMHAIA-GFKLCLSRDTITVIGITGSNGKTTTKSVLAYVLSKFGNTVATHGN 141 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN IG P+T++R+ + + E G G+I L + P IAV+ + AH+ Sbjct: 142 QNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKIAVPDIAVLLSAGHAHVEKSGS 201 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +E + S KAE+ L + + LNYDD + L + Y FG K A F+ Sbjct: 202 LESVCSMKAELARDLPEGSKVLLNYDD-------PRIARLSVGNRYYFGTDKRAHFRASH 254 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + ++ V Q S+EV IG H N+L L + +L D + + +S +P Sbjct: 255 VETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALSTLVLLGFDAEVCARYISEVNP 314 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + G F++I ++YNA+ S+K A+ L + + RRIAVLG + +MG Sbjct: 315 IDGRMQY----IPLGDFSIIHDAYNASFESVKCALDSLVVLGSLAK-RRIAVLGRIHDMG 369 Query: 383 ELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQ 438 EL+Q + L + +I+ V +S + + L + + + + E ++ I Sbjct: 370 ELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAKGVPNKEIVWFEDLETAKHEIF 429 Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461 GD+V+ K+SN+ F L+ Sbjct: 430 DLFSPGDIVLFKASNAENFSSLV 452 >gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK72] Length = 456 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/442 (29%), Positives = 214/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYLL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL + G + + D E L + FG +AD L + ++ Sbjct: 205 IADGLRENGLLIVPADKIVNEFLPTGCD------LVRFG--PDADIFLTRLEERKNSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G ++S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio furnissii NCTC 11218] Length = 453 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 218/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+RSIA F A+ G +D H+F AV GA ++V + +++P Sbjct: 24 IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERAL-----DVNVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + AL +L + +AITGS GKTT KEM+ LS+ + G++NN Sbjct: 79 VVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D+ + ELG +H+GEI + LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRK--W 263 AK EI++GL T +N D L ++ L K++ +F ++ +ADF R Sbjct: 199 KRAKGEIYQGLSAGNTAVVNLDSQGGALWQS---VLADKSVKTFSVTEHSADFYPRDIVL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E S++ V G + V IG H N L + + A + L+ H Sbjct: 256 NAAGEASFVLVTPIG-DVAVKLGIIGKHNVGNALAASALAIEMGATLADIQHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L TLID+SYNA+ +MKAA+ +L S R +LG+M E+GE Sbjct: 313 KVKGRVDVTELTD-HITLIDDSYNASVPAMKAAVDLLGGFS----ATRWLILGNMAELGE 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + +V G + D H++ D + +FI+ L Sbjct: 368 ESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDVCHGR---HFASHQD-MIMFIEQHLEQ 423 Query: 444 GD----VVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G +++ L E++ Sbjct: 424 QPDRTHVLIVKGANSAGMSKIVAALKEKY 452 >gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 457 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 211/446 (47%), Gaps = 33/446 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I P + F +KG DGHDFI A + GA + + ++ P V+DVL Sbjct: 32 DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEQEVADH------PYILVEDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A LA ++ + A+TGS GKTTTK+ML LS+ KTY G+YNN IG+P T Sbjct: 85 TAFQALAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLSTSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L P A++T + AHL+ F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKLQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +G+EK G++ L D E + + + FG A+ ++ + + + + Sbjct: 205 IADGMEK-GSLLLAPADPIVE-----DYLPTEQKVVRFGPG--AELEITELTERKDSLTL 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS--ILTADVDTAIKALSVFHPKEGRGKRY 330 + KS+++ G Y+ M+ + + + + A + L + + + Sbjct: 257 KANFLEKSLDLPVTG-KYNATNAMIASYVALQEGVTEEQIGQAFQNLELTRNR----TEW 311 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + A N ++ + YNANP +MK + S I + G+++AVL DM E+G+ S H Sbjct: 312 KKAANGA--DILSDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHN 369 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLFIQSSL 441 + LS + V G + L + HV+Y + + + ++ SL Sbjct: 370 QMILSLSSDALDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMVKQVKESL 429 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 D +++K SNS +L+ L E Sbjct: 430 GAHDQILLKGSNSMNLAKLVESLENE 455 >gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] Length = 452 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 216/465 (46%), Gaps = 25/465 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG S F++ IS D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATQGTSAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A G +V V I + VD+ L A LA R R ++AITGS GKTTTK Sbjct: 63 ATGAIVEKGRAVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + +YNN IG+P TL R+ + + + E+GM LG+I L + Sbjct: 118 EMVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT + +H+ E IA AK E+ L + LN DD + + + + + Sbjct: 178 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG-- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 236 -KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 294 RVLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419 R+IA+LGDM E+G+ S+ H ++ ++L+ S V+ G F K A Sbjct: 350 EGK---RKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + M + I+ GDV++VK S R++ L Sbjct: 407 TAFRCKSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448 >gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 447 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 141/430 (32%), Positives = 211/430 (49%), Gaps = 31/430 (7%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 ++D R P F A G + DGHDF+ A + GA V+ S+P V D Sbjct: 30 ALDGRKAEPGGLFVAFAGEYADGHDFVDQAARAGAAAVL-------GTRPTSLPTVVVQD 82 Query: 91 VLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 AL +LA V RLR T++ +TGS GKT TK+++ LSS T A GS NN +G Sbjct: 83 AREALQRLAKHVVDRLRPGLTVVGVTGSQGKTGTKDLIAAVLSSAAPTVATAGSLNNELG 142 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ R + F + E+G H+G+I LT LV P +AV+ + AHL F IA Sbjct: 143 VPLTMLRADAETRFLVLEMGARHVGDIAALTDLVAPDVAVVLNVGRAHLGEFGSRGAIAK 202 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQC 266 KAE+ +GL GT LN DD A H L + +FG++++AD Q+ + Sbjct: 203 TKAELVQGLAPGGTAVLNADDPRV----AAMHTLTDGPLLTFGRAEHADVQVLYLVLDRL 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S+ +++ V IG H + N + ++ A KAL+ Sbjct: 259 GRPSFTVRTADARAV-VTLPLIGAHQSLNAAAAVTAGLAAGVPLEAATKALATASL---- 313 Query: 327 GKRYRCALN--QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 ++R L G TL+++SYNANP S +AA+ L+ I RRIAVLG+M E+G Sbjct: 314 -SKWRMELRGLAGGATLLNDSYNANPDSTRAALDALAAIE---AARRIAVLGEMRELGPS 369 Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 +++ H + + +I + H +A A PR++ + + D +++ L Sbjct: 370 TETEHRAIGRYAAHRADIILAVGAPAHPIATA-AGPRALTLPDN---DAALAWLREHLAA 425 Query: 444 GDVVVVKSSN 453 GDVV+VK+S Sbjct: 426 GDVVLVKASR 435 >gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium cylindroides T2-87] Length = 453 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 216/469 (46%), Gaps = 29/469 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ + +G + G+ IDSR I + + G DGH FI +QKG Sbjct: 5 TIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVIQKGV 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D I VDD L AL LA A +I +TGS GKT+ K+M Sbjct: 65 KATLWQKDHTPY--PEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKTSCKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L S KKT G+ NN IG+PLT+ + DV+ I E+GM + GEI FLTH+ RP Sbjct: 123 LYSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKGEIDFLTHIARPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALG 243 +++ITTI AH+ N G ++IA AK EI E L K G +FL YD E+ + + Sbjct: 183 VSIITTIGSAHMENLGGKKQIAQAKLEILENL-KPGGLFL-YDKESPEIQECLLEMDIDP 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + SFG N D + +E +E + ++ + +G A+N L + + Sbjct: 241 SKRLVSFG--FNGDISIISSIDYTENG-IEFYCSSLTDKITLNALGDFQAKNALPCIYVA 297 Query: 304 SILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLS 361 +D I S+ K+ + R AL + +ID++Y +NP S KAAI L Sbjct: 298 ------LDQKISTSSILKGLKDLEMTKMRTALLKVHDAKIIDDTYKSNPESAKAAIDTLM 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDA 417 ++ + IAVL DM ++G H + N+ V+ LS + + A Sbjct: 352 KVQAK---KHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYATGPLSKYTIKAC--- 405 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +I + ET D + ++ L + +++K S + +++ L E Sbjct: 406 --TNIESKWFETKDEIVEELKHLLNEDCAILIKGSRAMHMDEIVDKLKE 452 >gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas fimi ATCC 484] gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas fimi ATCC 484] Length = 485 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 227/473 (47%), Gaps = 41/473 (8%) Query: 23 PQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G V + DSR + P F A+ G H DGHD+ AV GA LV+ ++ + G Sbjct: 25 PHGLVVAGAVVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVLGARELTGADGR 84 Query: 81 LSIPVFGV--DDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130 L V + LG L + V RLR+ + ++ ITGSVGKTTTK++L Sbjct: 85 LLPVVVVPDVERALGDLAR-EVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLLAQLC 143 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S T A + S+NN IG+PLT+ R F + E+G S G + +LT + P +AV+ Sbjct: 144 GSAGPTVAPVRSFNNEIGLPLTVLRADESTRFLVLEMGASGPGHLTYLTDIAPPDVAVVL 203 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F GIE +A+AK+EI +GL G LN DD ++ AL + +F Sbjct: 204 VVGHAHLGGFGGIEAVATAKSEIVQGLLPDGVAVLNADDPRVLAMR----ALAPGDVVTF 259 Query: 251 GKSKNADFQLRKWKQCSEQSW-----MEVQ--LQGKSMEVVHHGIGYHMAQN---MLMTL 300 G S A Q+R ++S +E + +++ V +G H N T Sbjct: 260 GASTGA--QVRAHDVVVDRSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNALAAAATG 317 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + +V + A P R T+ID+SYNANP SM+AA+ L Sbjct: 318 LAVGLTLDEVAVGLGAADALSP-----HRMHVVERPDGVTVIDDSYNANPDSMRAALKAL 372 Query: 361 SQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + ++ G RR +AVLG+M E+G+ ++ H + ++ N+ + G A++D Sbjct: 373 AVLA--GRDRRSVAVLGEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGAN 430 Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V ++ ++ F+ L GDVV+VKSS G ++L +LL+ E Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLVKSSYGAGLWQLGDLLVGEV 483 >gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] Length = 470 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 127/406 (31%), Positives = 192/406 (47%), Gaps = 43/406 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + HD +A+ H +G + + D+R++AP + F A++G +DGHDF+ A + Sbjct: 1 MMSLHDATRALACHGARATGEGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ A +P+ VDD AL LA A R R +I +TGS GKTT K Sbjct: 61 GAAAAMVDAAWSAGKADAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVK 120 Query: 124 EMLTIALS--------SIKKTYACIGSYNNHIGVPLTLARMPVDVDF---GIFELGMSHL 172 EM L + A G+ NN IG+PLTL + DF + E+GM+H Sbjct: 121 EMCAAILRVQASRDGFGEESVLATRGNLNNDIGMPLTLLEL---RDFHRAAVIEMGMNHP 177 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--- 229 GEI +L+ L +P +A++ AHL ++E+A K I+EGL G +N DD Sbjct: 178 GEIGYLSALAQPTVALVNNAQRAHLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHA 237 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHH 286 ++ L A + I +FG AD R C+ + S +E+ + ++ Sbjct: 238 GYWRSLNAG------RPIVTFGIDHPADVSAR----CTLRGLGSRLELDIPQGKIDFALQ 287 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLID 343 G H +N L ++ + L+ F GR +R R AL ++D Sbjct: 288 VPGLHNVRNALGAAAACLAAGVPLEAVAEGLAGFAGTRGRLQRRSGPRGAL------ILD 341 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +SYNANP S++ I VL+ + H VLGDM E+GE S H Sbjct: 342 DSYNANPDSVRVGIDVLAAMPGH----TWLVLGDMGEVGETSAQVH 383 >gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 460 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 224/454 (49%), Gaps = 49/454 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS K + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYKVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +AVIT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLET 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF- 258 +EIA AK EI + L + G N D+ K+ ++ KT FG+ D Sbjct: 203 LGSRKEIAKAKLEIIDWLRENGLFLYNGDEPLLS-RNNKTSSVNCKT---FGEKDTNDLF 258 Query: 259 ----QLRKW----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 QL ++ K + +V L GK H N ++ + + + Sbjct: 259 PTNVQLDEYGVHFKLNHSKIQYDVPLHGK-----------HNIFNTIVGIAVGQFYKVPI 307 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + +AL + + R++ + FT+I++++NA+P+SMKAAI L +++ + + Sbjct: 308 EKIQEALQQINITK---MRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAY--KK 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 ++ V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ H ++ Sbjct: 363 KMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYHTGKIKSF 422 Query: 431 DGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 D + L DVV++K S ++ Sbjct: 423 DNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIV 456 >gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verrucomicrobium spinosum DSM 4136] Length = 460 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 119/367 (32%), Positives = 186/367 (50%), Gaps = 19/367 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR I P E F A+ G +D HDF+ Q GA V+V + + ++ +L V V Sbjct: 29 VNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAAVIV-SRLPENVEALGCGVIEVP 87 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA A R +I ITGS GKT+TK+++ L + A +G++NNHIG+ Sbjct: 88 DTLLALQQLARAYRELLNPLVIGITGSNGKTSTKDLVAAVLRKKYQVCATLGNFNNHIGL 147 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ RM + + E+GM+H GEI L + RP A+IT I AH+ E IA Sbjct: 148 PLTILRMEEGDNCAVLEMGMNHHGEIAVLAGIARPDAAIITNIGVAHIEYMGSREGIAQE 207 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K + + G + LN +D F + A+SHA + G D + + Sbjct: 208 KGTLAAAVPHGGVVVLNANDDFSSSIAARSHARVVLAGVGEG-----DVVATLTESGARG 262 Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEG 325 S+ + G+ + VH + G HM N + + ++ D+ A+ + + Sbjct: 263 SFFSLNFDGRVVVAVHLPVPGEHMVGNAALAAAVGWHFGVVPQDIAAALGEVQLTK---- 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +G T++D+SYNANP SM+A + L+ + GRR+AVLG M E+G + Sbjct: 319 --GRVQVKFWRG-VTVLDDSYNANPDSMRAGLKTLAALQI--PGRRVAVLGRMGELGPHA 373 Query: 386 QSFHIDL 392 +S H ++ Sbjct: 374 ESSHREV 380 >gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] Length = 470 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + ++ G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468 >gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] Length = 466 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 133/434 (30%), Positives = 212/434 (48%), Gaps = 19/434 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + IDSR+++P F I G DGH+F + AV KGA V+ + + PV Sbjct: 26 IEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSKGAAAVLADRPLAGL--PEGTPVL 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + AL KLA A R R++A ++A++GS GKTT KE+ L+ + T ++NN Sbjct: 84 LVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVKELTAAILAKVGPTAKNFKNFNNK 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PL++ + ELG+S GE+ L + P +AVI + PAHL + + Sbjct: 144 IGLPLSMLEAGETDRLWVMELGISAPGEMAPLAAIAEPDVAVIHNVGPAHLEALIDVAGV 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A+ K+ +F L G + D + L A + A+ K +A ++ + Sbjct: 204 AAEKSRLFAALRPGGVALASMD---YPELWAAAKAVRPDVRGMSVKGGSAPYRAKYLGAL 260 Query: 267 SE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKE 324 SE + ++L G +EVV G H A+N+L +L A + L S P++ Sbjct: 261 SEGRGRFFLRLDGLELEVVTPLTGGHFAENILAAAASARLLGATEEQIATGLESAVMPEQ 320 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGE 383 R+ C G +TLID++YNANP SM+ AI+ ++ + +G+ + VLG+M EMG Sbjct: 321 ----RFFC-RRHGCYTLIDDTYNANPLSMRRAIATAAEAA---QGKPLVLVLGEMREMGA 372 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ---SS 440 ++ H L E + V+ G H A+ + L R + +D +F Q S+ Sbjct: 373 QAEDEHHKLGEEAAASGAKAVFYHGGHAQAVGEGLARKGYAGLFAVVDTPEMFTQTVASA 432 Query: 441 LVDGDVVVVKSSNS 454 + G V + K S S Sbjct: 433 GLRGGVYLFKGSRS 446 >gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 459 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 144/480 (30%), Positives = 221/480 (46%), Gaps = 39/480 (8%) Query: 4 LWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L +F ++ A+QG + +GF +G+S DSR++ P++ F ++G H DGH F+ A+ Sbjct: 2 LLSFDEVCAAVQGARVCDARGARGF-DGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEAL 60 Query: 62 QKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAIT 114 QKGA +++ + VA V D L AL LA + A I I IT Sbjct: 61 QKGAVATLIDQRYPHAGEYVAWCTRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGIT 120 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTT KEM S + A G+ N+ IG+P +L + + + GIFELGM+ GE Sbjct: 121 GSSGKTTVKEMARAVFSERYRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGE 180 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +R L ++ PH A+IT + AH+ + IA K EIF + F+ DD++ Sbjct: 181 MRTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVP-DDAYRVF 239 Query: 235 LKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L + G +Y G A D LR + + W+ V L G Sbjct: 240 LSNIPY--GRVVVYDQGGRGLATEVIDEGLRGSRVLYQGRWIRVPLP-----------GV 286 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H A+N L + + + + + + + P GR CA T + + YNANP Sbjct: 287 HNAKNALAVIALAAQVGLPAEEIQRGMERVKPPFGR-SHVVCA----SLTFLLDCYNANP 341 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 SM AA+ + + IS ++ VLGDM E+G + H + + + + V++ G Sbjct: 342 DSMAAALHLCAHISAVS---KVYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYVFGPE 398 Query: 409 FHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 F K + R ++ E + L + + L GD V+VK S S RL LL +E Sbjct: 399 FCRAVRKVSWGRKRVYAFALEELSALQETLDAQLRRGDFVLVKGSRSVALERLEPLLRKE 458 >gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] Length = 464 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 123/380 (32%), Positives = 192/380 (50%), Gaps = 31/380 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V IS D+R + FFA+KG +D HD++ A+++G +VV ++ ++++P Sbjct: 25 VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVEREL-----AVNVPQI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139 V+D AL +LA + +A+TGS GKTT KEM L +K AC Sbjct: 80 IVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKIL---QKVTACEDQVLYT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +GVPLTL R+ + F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 137 FGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEG 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF---GKSKN- 255 F + +A AK EI+ GL+ G +N + E K +G + SF G+ K+ Sbjct: 197 FGSLAGVAQAKGEIYRGLKAGGKAIVNLAHYYPEWQK----EIGDHELQSFCYTGEDKDS 252 Query: 256 -ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 ADF + S + +E+ +G H N L + + AD+ TA+ Sbjct: 253 YADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSNALAATALAMAVGADL-TAV 311 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 KA + +G+ Y + + ID+SYNAN SMK+A+SVL Q RI V Sbjct: 312 KA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSMKSAVSVLKQYPAF----RIFV 365 Query: 375 LGDMCEMGELSQSFHIDLAE 394 +GDM E+G+ S + H ++A+ Sbjct: 366 VGDMAELGKDSPACHQEVAD 385 >gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Pantoea ananatis AJ13355] Length = 452 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 188/387 (48%), Gaps = 25/387 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++ D+R + F AI G +D HDF A+ KG ++V+ + +S+P Sbjct: 24 LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVSKHL-----PVSVPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A KLA R ++ A ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 79 VVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCGETLHTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVP+TL R+ + + + ELG +H GEI + T LVRP A++ +A AHL F +E + Sbjct: 139 FGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTDLVRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EIF GL GT LN D + + + H KT++ F ++ + DF + Sbjct: 199 AKAKGEIFYGLPARGTAILNADSNDWPRWQENLHG---KTVWRFSPQAADCDFGAHDIRI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + +++ G H N L + + A + L G Sbjct: 256 RQDGTHFVMHTPRGEADIILPLPGRHNIANALAAAALALSVDAPLSAVQAGLKRLQSVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R + +Q ++D+SYNAN SM AA VLS++ G R+ V+GDM E+G+ S Sbjct: 316 RLFPVRLSEHQ---LILDDSYNANVGSMVAAAQVLSEMP----GYRVMVVGDMAELGDES 368 Query: 386 QSFHID---------LAEVLSLYNISH 403 + FH + L VLS SH Sbjct: 369 EKFHREVGLAAKAAGLDRVLSTGQFSH 395 >gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 459 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 218/450 (48%), Gaps = 25/450 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + F ++G DGH ++ A GA + +D I + P+ Sbjct: 26 VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 83 VVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVAKTYA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GM G++ FL+ LV P IAVIT I AH+ F Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI GL++ GT+ N D+ LL+ + L + + FG+ + + Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLAQRQM-RFGRQLSNNLYATSV 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q V + E +G + N L + + IL +AL+ Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + + + ++ + YN+NP + K + +++ +P GRRIAVLGDM E+G+ Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAE-TPVA-GRRIAVLGDMLELGD 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFI 437 + H LAE + I+ V+L G + LKD L IH + + + L + Sbjct: 370 AAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADL 429 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++L D+V++K+S+ ++ L E Sbjct: 430 TATLTGEDIVLLKASHGIHLEEVLTALKAE 459 >gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2866] Length = 457 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 134/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA VVV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVAQGAVTVVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter calcoaceticus PHEA-2] Length = 466 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 182/385 (47%), Gaps = 21/385 (5%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D HDF+ G + +V + I L Sbjct: 32 IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + S+ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E I AK+EI+ + G + D F + + A I T G D +L Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDVEL 266 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + S V G H QN + + ++ ++ L Sbjct: 267 -----LPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDIVQGL--- 318 Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 ++ +G + R + + + ID++YNANP SM+AA VL Q +G ++ V+GD+ Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGVKVMVMGDIG 372 Query: 380 EMGELSQSFHIDLAEVLSLYNISHV 404 E+G+ S H DL L+ + H+ Sbjct: 373 ELGDSSWQEHHDLGRDLAELPLDHI 397 >gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] Length = 464 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 128/401 (31%), Positives = 200/401 (49%), Gaps = 32/401 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q ++G +G + V IS D+R + FFA+KG +D HD++ A+++G Sbjct: 5 TTQQLAQTLKGKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +VV ++ ++++P V+D AL +LA + +A+TGS GKTT KEM Sbjct: 64 VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118 Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 L +K AC G+ NN +GVPLTL R+ + F + ELG +H+GEI + Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLIPEHKFAVVELGANHIGEIAYT 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIVNLAHYYPEWQK-- 233 Query: 239 SHALGIKTIYSF---GKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +G + SF G+ K+ ADF + S + +E+ +G H Sbjct: 234 --EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + AD+ TA+KA + +G+ Y + ID+SYNAN SM Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKDNVL-FIDDSYNANVDSM 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 K+A+SVL Q RI V+GDM E+G+ S + H ++A+ Sbjct: 349 KSAVSVLKQYPAF----RIFVVGDMAELGKDSPACHQEVAD 385 >gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] Length = 449 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 141/463 (30%), Positives = 220/463 (47%), Gaps = 25/463 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++ +A G +G Q ++ +S DSR I Q F A+ G +D HDFI ++GA + Sbjct: 5 EIAKACDGRLVGADCQ--ISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGATAL 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V+ ++ ++P V D AL +A A+TGS GKTT KEML Sbjct: 63 LVSKEV-----DTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEMLAS 117 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L+ + A G++NN IGVPLTL R DF + ELG +H EI + T L +P++A+ Sbjct: 118 ILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNVAL 177 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + IA AHL F IE +A AK EIFEGL++ G N D + L S K + Sbjct: 178 VNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENGIAIYNLDSNG---LPKWSSLFEGKQVV 234 Query: 249 SFGKSKN-ADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 SF + + ADF + E S+ +G S++V IG H N + + Sbjct: 235 SFAMNDSCADFYASNIEVNAIGEPSFQLNTPKG-SIQVSLGIIGKHNVANAVAAAALAIQ 293 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + ++ + L +GR A +ID++YNA+ +MKAA+ +L Sbjct: 294 ANSSLNDIQQGLQELGSVKGRVAVETLASG---LKVIDDTYNASVPAMKAAVELLGGF-- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 +G+R VLG+M E+GE S + H ++ E + Y V G + + L H Sbjct: 349 --KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISE-LCNGRHFE 405 Query: 426 YSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466 ++ +L + L+ + V+VK +NS +++ L E Sbjct: 406 TRSDLNA-YLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 447 >gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 452 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 218/444 (49%), Gaps = 23/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKL-----DIDLPQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 VVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + ++ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL G +N D++ + L +S +G + + F + N+DF Sbjct: 199 AKAKGEIYTGLPDDGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAANSDFSATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKE 324 S + + +EV+ G H N L +S+ AIKA L+ Sbjct: 256 TSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAA-ALSMAVGASHAAIKAGLANLKAVP 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + A N+ L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G+ Sbjct: 315 GRLFPIQLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMAELGDE 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S++ H+ + E + V +G A+ DA + H+++ L +++ + + Sbjct: 368 SEACHVQVGEAAKAAGLDRVLSAGTLSKAISDA--SEVGEHFADK-SALIERLKALITEK 424 Query: 445 DV--VVVKSSNSCGFYRLINLLLE 466 + V+VK S S +++ L E Sbjct: 425 QIVTVLVKGSRSAAMEEVVHALQE 448 >gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-175] Length = 457 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + ++ G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455 >gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 457 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + ++ G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMNSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGDAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455 >gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 455 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 208/444 (46%), Gaps = 19/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I+ F IKG DGHDF+ A++ GA + I V Sbjct: 24 ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ LA + T++ ITGS GKTTTK+M+ L+ Y ++NN Sbjct: 81 EVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + E+GM G++ L+ L RP +AVIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L++ G N D E L A+ A + +FG + + + Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 S+ ++ G E IG H N + + +V + D I A L+ F P Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFVPTAN 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + + + I YN+NP ++KA + Q+ GRRIAVL DM E+G S Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440 H LA L I+ ++L G + L AL +++H + + M L ++S Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQNLHYYPEDEMSHLIDDLKSD 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 + D+V++K S+ R+++ L Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454 >gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] Length = 456 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 211/447 (47%), Gaps = 29/447 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A +KGA + P Sbjct: 26 LNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEKGAAATFSEHPIEGK------PYL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A LA + + +IA+TGS GKT+TK+M+ L++ KTY G+YNN Sbjct: 79 LVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKTYKTQGNYNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP + + + E+G H+G+I L+ + +P IAV+T +A AHL F E+I Sbjct: 139 IGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIAQPRIAVLTIVAEAHLEFFGSREKI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +I +G++ G I L D + + + + FG+ + + K + Sbjct: 199 AQGKMQIVDGMDSHG-ILLAPGDPIID-----PYLPDNQMVIRFGEGEEIFVKDIKEDKN 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S V Q ++ + G + A N ++ + +L + ++AL + R Sbjct: 253 SLTFTTNVLDQAVTLPLS----GKYNATNAMIAAYVGKLLAVSDEDIVEALESVQLTKNR 308 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + ++ A N ++ + YNANP +M+ + S I + +G++IAVL DM E+G S Sbjct: 309 TE-WKKAANGA--DILSDVYNANPTAMQLILETFSNIPNNPDGKKIAVLADMKELGPDSV 365 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY---SETMDG---LFLFI 437 S H L LS I + G + L + HV++ E +D L Sbjct: 366 SLHSKLIMSLSPEKIDTLIFYGQDIQELSQLASQMFPIGHVYFFKKDEQLDQFEELCQLT 425 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L D +++K SNS RL+ L Sbjct: 426 KEKLGQNDQILLKGSNSMHLDRLVEYL 452 >gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Erwinia sp. Ejp617] Length = 452 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 206/443 (46%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R F A+KG +D HDF+L A+ G ++V+ + + + + Sbjct: 27 VTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVSKRLPVDVSQVVVA----- 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R +S A I+A+TGS GKT+ KEM L +T G+ NN IGV Sbjct: 82 DTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + ELG +H GEI + T LVRP A++ +A AHL F + +A A Sbjct: 142 PLTLLRLKPQHRYAVIELGANHQGEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268 K EIF GL GT +N + + + H KT++ F + ++DF ++ Sbjct: 202 KGEIFSGLPLNGTAIINGESHDWPHWQQALHG---KTVWRFSPGQADSDFYASDVIISAQ 258 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + ++V G H N L + + A + + LS GR Sbjct: 259 GTHFILHSPQGDVDVTLPLPGRHNIANALAASALALSVGAPLSAVRRGLSTLKAVPGR-- 316 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + AL+ L+D+SYNAN SM AA VL+ + G R+ ++GDM EMG + Sbjct: 317 LFPLALSADKL-LLDDSYNANVGSMTAAAQVLAGM----PGYRVMIVGDMAEMGAEAAEC 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET----MDGLFLFIQSSLVDG 444 H + + I V +G + DA + H+++ + L Q + Sbjct: 372 HRQVGNAIRHAGIDKVLSTGLLSHGISDA--SGVGEHFADKAALGARAIELLAQHQHI-- 427 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 ++VK S S +++ +L E+ Sbjct: 428 -TLLVKGSRSASMEQVVQILQEK 449 >gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 189/380 (49%), Gaps = 26/380 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+RS+ F A+KG +DGHDF+L AV KGA VVV + +L +PVF V Sbjct: 31 VYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGAAGVVVAARE-ETFAALPVPVFAVP 89 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A LA R R +IA+TGSVGKT+T++M+ LS + + ++NN IG+ Sbjct: 90 DTLRAYQALARFHRRRFALPVIAVTGSVGKTSTRQMIASVLSQKLRVWQTEKNFNNEIGL 149 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+GM G+I L + P I V+T + +H+ E IA A Sbjct: 150 PKTLLGLTAEHEACVVEMGMRGPGQIAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKA 209 Query: 210 KAEIFEGLEKTGTIFLNYDD----SFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263 K E+ L TGT LN DD + +L + K + + G+ + D L Sbjct: 210 KGELPAALPATGTAVLNQDDWRVAAMAKLCRGKVIGYGTSVGAAVRAGEIQTDDKGLSFI 269 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 +C +Q++ ++ V +G H N L + +L K L+ + Sbjct: 270 CRCFDQTFR------ATVPV----LGKHHVYNALAAVATARLLGLSETQMCKGLAAYA-- 317 Query: 324 EGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 G R L + G +T I+++YNANPASM+ A+ L+ + ++IAVLG M E+G Sbjct: 318 ---GVPMREELVHVGPYTFINDAYNANPASMEEAVQTLAAVKKE---QKIAVLGGMLELG 371 Query: 383 ELSQSFHIDLAEVLSLYNIS 402 + + H L + ++ +I+ Sbjct: 372 DWTVREHELLGKKIAAASIT 391 >gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri] gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] Length = 459 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 136/450 (30%), Positives = 219/450 (48%), Gaps = 25/450 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + F ++G DGH ++ A GA + +D I + P+ Sbjct: 26 VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 83 VVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVAKTYA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GM G++ FL+ LV P IAVIT I AH+ F Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI GL++ GT+ N D+ LL+ + L + + FG+ + + Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLAQRQM-RFGRQLSNNLYATSV 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q V + E +G + N L + + IL +AL+ Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + + + ++ + YN+NP + K + +++ +P GRRIAVLGDM E+G+ Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAE-TPVA-GRRIAVLGDMLELGD 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSET-MDGLFLFI 437 + H LAE + I+ V+L G + LKD L P HY+ + + L + Sbjct: 370 AAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIYHYAASDLQQLIADL 429 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++L D+V++K+S+ ++ L E Sbjct: 430 TTTLTGDDIVLLKASHGIHLEEVLTALKAE 459 >gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 479 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 206/449 (45%), Gaps = 32/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A + GA D+ A + Sbjct: 48 INQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFENGALATFTEKDLPADQAHIL---- 102 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A KLA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 103 -VDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 161 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +P AV+T I AHL F ++I Sbjct: 162 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 221 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ + + D L + + FG A+ + + + Sbjct: 222 AQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEF 273 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + L G +V G + A N ++ + L + + AL+ + Sbjct: 274 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 330 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 331 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 387 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHY------SETMDGLFL 435 H + L+ I V G + L L I HV+Y + D + Sbjct: 388 VQLHTQMILSLTPDAIDTVIFYGEDIAELS-QLASQIFPLGHVYYFKKTADEDQFDAMVK 446 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 447 HIKESLGEHDQILLKGSNSMNLAKVVEEL 475 >gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 504 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 207/448 (46%), Gaps = 43/448 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89 DSR I P + F +KG DGHDFI A + GA VA+ + P V+ Sbjct: 80 DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 129 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A LA A ++K + A+TGS GKTTTK+ML LS+ TY G+YNN IG+ Sbjct: 130 DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 189 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + E+G HLG+I L+ L P A++T I AHL F EIA Sbjct: 190 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 249 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266 K +I +G+ + G + + D L K +T+ FG + + RK Sbjct: 250 KLQIADGMPEGGLLVVPADPIVDAYLPEK------QTVVRFGPDEEIFITELIERKDSLT 303 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325 +++E + + V G + A N M V++ + AI+ + Sbjct: 304 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALQEGVSEAAIRDSFETLQLTRN 355 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + ++ A N ++ + YNANP +M+ + S I + GR++AVL DM E+GE S Sbjct: 356 RTE-WKKASNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 412 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + LS + V G + L + HV+Y + + + Sbjct: 413 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 472 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ SL + D +++K SNS +L+ L Sbjct: 473 VKESLKEQDQILIKGSNSMNLAKLVEEL 500 >gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915] Length = 447 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 145/442 (32%), Positives = 208/442 (47%), Gaps = 53/442 (11%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVD 89 +D R P F A G H DGHDF A Q GA VA +GS +P VD Sbjct: 31 LDGREARPGGLFVAFDGEHVDGHDFAGQAGQAGA---------VAVLGSRPTVLPTVVVD 81 Query: 90 DVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 DV AL LA RLR+ T+IA+TGS GKT+TK+ L L+S+ T A + + NN + Sbjct: 82 DVQAALQALAAHVLARLRAGLTVIAVTGSQGKTSTKDQLGAVLASVAPTIATVANRNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R + F + E+G H G+I LT+L +AV+ + AHL F E I Sbjct: 142 GVPLTVLRAGPETRFLVLEMGARHTGDIAMLTNLYPLDVAVVLNVGTAHLGEFGSREAIG 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261 AK E+ GL GT LN DD L+++ S + +FG + +AD ++R Sbjct: 202 RAKGELVRGLVPGGTAVLNADDPRVALMRSLSDG----PVLTFGYADHADVRVRDLTLDR 257 Query: 262 ----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + C+ + + V L +G H A N +D A L Sbjct: 258 FGRPSFTLCTADASVGVTLP---------FVGGHQAGNASAATAAALAAGVSLDVAAAVL 308 Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAV 374 ++R L TL+++SYNA+P S +AA+ L + EG RRIAV Sbjct: 309 GTASL-----SKWRMELRHLTSGVTLLNDSYNASPDSTRAALDALLAV----EGARRIAV 359 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGL 433 LG+M E+G+ S++ H + E + V G V L D A R++ + + D Sbjct: 360 LGEMRELGQASEAEHRAVGE-YAAARADMVIAIGETVRPLADGAGDRAVVLADN---DAA 415 Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455 ++ +L GDVV+VK+S Sbjct: 416 VKWLHGNLAAGDVVLVKASRGA 437 >gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] Length = 464 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 126/401 (31%), Positives = 200/401 (49%), Gaps = 32/401 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q ++G +G + IS D+R + FFA+KG +D HD++ A+++G Sbjct: 5 TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGC 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +VV ++ ++++P V+D AL +LA + +A+TGS GKTT KEM Sbjct: 64 VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118 Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 L +K AC G+ NN +GVPLTL R+ + F + ELG +H+GEI + Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIAYT 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK-- 233 Query: 239 SHALGIKTIYSF---GKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +G + SF G+ K++ DF + + S + +E+ +G H Sbjct: 234 --EIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + AD+ TA+KA + +G+ Y + + ID+SYNAN SM Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSM 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 K+A+SVL Q RI V GDM E+G+ S + H ++A+ Sbjct: 349 KSAVSVLKQYPAF----RIFVAGDMAELGKDSPACHQEVAD 385 >gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 464 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 212/464 (45%), Gaps = 61/464 (13%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R I P +FA+KG +DG+ F A+ KGA L V++ P + + Sbjct: 28 GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDN-----------PAYQI 76 Query: 89 D-------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 D DVL AL +LA R K II ITGS GKTTTKE++ LS + A G Sbjct: 77 DERTLLVPDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IGVPLTL + + D I E+G +H EI L+ + P IT+I AHL F Sbjct: 137 NLNNAIGVPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFG 196 Query: 202 GIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--- 257 E + KAE+++ L+ TI N DD+ +S G +YSFG + + Sbjct: 197 SFEGVIKTKAELYDYLKAHQKTIIYNADDTL-----QQSLVEGYANVYSFGTTDEVNVPV 251 Query: 258 -----------FQLRKWKQCSEQS-----WMEVQLQGKSMEV--VHHGIGYHMAQNMLMT 299 F Q E + +++ ++G S V H +G + N+ Sbjct: 252 ACVAVQPVSIRFSEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFNNIAAA 311 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-S 358 + + + + P R + N TL+ ++YNANP+SM AAI + Sbjct: 312 VAFGRYFRLPAAAIKRGIEKYVPHNNRSQLMAWGTN----TLLLDAYNANPSSMAAAIHN 367 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ P+ +++ +LGDM E+G+ + + H + + L+ + V+L G H K Sbjct: 368 VLTM--PNFT-KKVLILGDMFELGDYAAAEHQQIVDSLTPHQWEGVYLVGQHFAQTKSPY 424 Query: 419 PRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 P+ ET + F Q + D ++++K S RLI Sbjct: 425 PQ------YETFEAFQEAFKQLTFTDS-LILIKGSRGMALERLI 461 >gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 427 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 22/381 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ DSR I FF+++G +++G+ F A++ GA V++ + I V Sbjct: 15 GVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKENYIQV--- 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L +LA R + K II ITGS GKTTTKE++ L + KTY G+ NNHIG Sbjct: 72 DNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL+L + + +F + E+G +H+GEI L+ + P+ IT AHL F E + Sbjct: 132 VPLSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYITNFGKAHLEGFGSEEGVIK 191 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++E L E +G IF N DD K K + FGK L K + Sbjct: 192 GKSELYEFLTESSGFIFYNSDDE-----KQKHILSNYNKKFGFGKEAGDLNYLVK----A 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + V++ K+ + G Y++ N++ + I L V+ +S + R Sbjct: 243 ENPNIVVEVNNKTFKSTLFG-NYNIP-NVISAISIGIFLGVPVEKVKNGISDYISSNNRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N +I ++YNANP+SM AI ++ +LGDM E+G Sbjct: 301 QILKINSN----NVILDAYNANPSSMLLAIKAFQNAELE---NKVLILGDMFELGRDENK 353 Query: 388 FHIDLAEVLSLYNISHVWLSG 408 FH ++ + + +I V+L G Sbjct: 354 FHQEIVDYCNNLDIERVFLVG 374 >gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes str. Scott A] Length = 470 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 211/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 384 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 MNGNEWILVKGSYGMGLKDVVENLI 468 >gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] Length = 455 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 123/443 (27%), Positives = 206/443 (46%), Gaps = 17/443 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F ++G DGHDF+ A+ GA + I V Sbjct: 24 ITSVAFDSRKITDGGLFVPLEG-ERDGHDFVAGAINNGASATLWKKGHPNKPDD--IAVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ LA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 81 EVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQENFNNG 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P + VIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L + G N D+ LL ++ + + +FG N ++ Sbjct: 201 ADAKMEITDFLREDGEFIYNGDEP---LLAERAKKIN-QAKATFGFEDNDTVYATGFRSY 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + IG H N + + + + +L+ F P R Sbjct: 257 KHHATFTINDSEQKFSIPM--IGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANR 314 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + + + YN+NP +++A ++ QI GRRIAVLGDM E+G+ S Sbjct: 315 MEWEKGDVGEDIMSDV---YNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSP 371 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSL 441 H LA L I+ V+L G + L +AL S+H + ++ MD + +++ + Sbjct: 372 ELHAGLANSLDPQVINEVYLIGDEMKHLYEALQTKYSEESLHYYQADHMDHMIDDLKNDI 431 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 D+VV+K S+ +++ L Sbjct: 432 KPNDIVVLKGSHGMHLEKVVARL 454 >gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] Length = 437 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 31/377 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI D+R + P E F A+ G +DGH F+ A+ +GA +V+ + ++PV V Sbjct: 32 GIQTDTRVLQPGEIFLALGGEKFDGHQFVEMAIARGAVAAIVDY----TYDYPNLPVIKV 87 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L A +LA R + +I +TGSVGKTTTKE++ L + K + G++NN IG Sbjct: 88 SNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIASVLGTRGKVHKTYGNFNNEIG 147 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL + DF + E+ M G+I LTH+ +P+I VIT + AH+ + IA Sbjct: 148 VPKTLLELSEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSEQAIAE 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----KSKNADFQLRKWK 264 AK E+ + LNYD+ + AK G Y F + K D+Q Sbjct: 208 AKCELLAEMPNDSVAVLNYDNPLL-MTTAKQVWSGEVISYGFSGGDIQGKLVDYQ----- 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++++ G ++ + G+ H N L L + +L D ++V P + Sbjct: 262 --------KIEVGGMTLPLPLTGV--HNGSNFLAALAVAKVLDVDWKLLEAGINVTMP-Q 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + ++ + ++DE+YNA P +M AA+ +L+Q R+IAVLG M E+GE Sbjct: 311 GRSQSWKLPKD---IMILDETYNAAPEAMLAALELLAQTPGR---RKIAVLGAMKELGER 364 Query: 385 SQSFHIDLAEVLSLYNI 401 S H + E + N+ Sbjct: 365 SAKLHQQVGETVRKLNL 381 >gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. CC9902] gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9902] Length = 449 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 145/466 (31%), Positives = 219/466 (46%), Gaps = 39/466 (8%) Query: 11 LQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 L A G +G P + I DSRS+ + F + G ++DGH F+ GA Sbjct: 8 LIACWGAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAA 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV + S + + VDD L A +LA+ R ++A+TGS GKTTT+E++ Sbjct: 68 VVEQSWSDPLPS-DLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRA 126 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 AL+ + + G+ NN IGVPLT+ + E+GM GEI L+ P +AV Sbjct: 127 ALAPLGDVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAV 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I AH+ E IA+AK EI L+ G + + D+ E +K ++ Sbjct: 187 ITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALLETALSK--------VW 238 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIV 303 S G+ ++R + + +EV H + G H A+N+L+ L + Sbjct: 239 S-GRV----VRVRLADDTPVAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVLLALAVA 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D ++ A+ V P GR +R L QG TL+DE+YNA+P ++ AA+++LS Sbjct: 294 DQLGVD-SASLNAMEVSVPG-GRNRR----LVQGGLTLLDETYNASPEAVMAALTLLSS- 346 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDA---L 418 GRR AVLG M E+G S H D+A + + + + G A+ +A L Sbjct: 347 ---QPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGL 403 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 PR V E ++ L GDVV++K+S RL+ LL Sbjct: 404 PRLAVVSSPEDA---AKPLKEWLRPGDVVLLKASRGVALERLLPLL 446 >gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002] gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002] Length = 1046 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 200/399 (50%), Gaps = 10/399 (2%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 + G++ + D+ A + L PV V D A+ + AR + ++A+TGS GKTT Sbjct: 632 RPVGVITSDPDVQAQLKDL--PVLHVADTGKAILAMGSYARKQMSGAVLAVTGSAGKTTL 689 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 ML AL++ +T A + N G+ LA + D + E+ + ++G+ + Sbjct: 690 VAMLADALNAYGQTAASAFNANLPHGLSWNLASINWDTPHVVLEVAVGNMGKSALI---A 746 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP+I++ T I PAHL S I +IA K+ IF G+ + LN D +E + + Sbjct: 747 RPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRDMLEWETVYQAAMEQ 806 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I ++G + +DFQL + + V+++G+ + G HMA N + L Sbjct: 807 DLN-IVTYGTTAQSDFQLVDHDALRQSA--TVRIRGRDITYPIGAAGLHMALNSVAVLAA 863 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L ++ A++ ++ F GRG+ L+ T+ID +YNANP SM+AA+ L Sbjct: 864 VLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNANPGSMQAALEHLRD 923 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + H RR+AVLG+M E+G + H DLA V+ I V++ G + LP + Sbjct: 924 MK-HAR-RRVAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYVMGELYTGFWEQLPAAR 981 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ ++D L + L D DVV++K SNS G + ++ Sbjct: 982 RGRHTNSLDELKSALSEELADEDVVLLKGSNSTGIHHIV 1020 >gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes 220] Length = 457 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 211/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDVPNP--PKDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A D I VH+ T + L + S Sbjct: 371 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 MNGNEWILVKGSYGMGLKDVVENLI 455 >gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 440 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 139/440 (31%), Positives = 202/440 (45%), Gaps = 27/440 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR I + F +KG DGHDFI A GA ++ + V L Sbjct: 26 VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA ++K +IA+TGS GKTTTK+M+ LS KTY G++NN Sbjct: 79 -VDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM H G+I FL+ L +P +A+IT I AHL E I Sbjct: 138 IGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K I GL G + D + + I FG D + K + Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPEN------QKISRFGLP-GEDLFITKLIEH 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILT-ADVDTAIKALSVFHPKE 324 E+ E +S+ + G Y+ ML +G+ LT A++ A+K + + + Sbjct: 249 KERLTFETNFLDESITIPVPG-KYNATNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRT 307 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 K A L+ + YNANP +M+ + I + GR+IAVL DM E+G Sbjct: 308 EWNKSKNGA------DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPT 361 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H ++ + + I V+L G + L D + V Y +D L + + L Sbjct: 362 AAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPVSYFTDLDLLTESLSADLKPA 420 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D V+ K SNS ++ L Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440 >gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] Length = 460 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 14/384 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+S DSR+I + + G +DG FI KGA + +TD ++SIP Sbjct: 26 LIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKGASAFLADTDCKIK-NNISIPY 84 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L +L LA A R K T +I ITGS GKTTTK++L L K IG+ N Sbjct: 85 IRVEDTLKSLQDLARAYRSELKNTKVIGITGSNGKTTTKDLLYEVLKEKYKVQKTIGNLN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP T+ + D + I E+G G+I T++ RP IA+IT I +HL E Sbjct: 145 NEIGVPKTILSLDEDTNIAIVEMGTDSFGDISLTTNISRPDIAIITNIGDSHLEKLKTKE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 I AK EI EGL + G N DD + + S+ + K I SFG+ + DF ++ Sbjct: 205 GILKAKMEIVEGLSQDGYFIYNGDDPTMK-KEISSYEVKQKMI-SFGEEDDNDFVVK--- 259 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S+ + +V +G H N +T+ + S+L D K LS P Sbjct: 260 -SSDDNRGKVSFTHDGETYTIPLLGSHNIYNGGVTVLVSSLLGLSTDQIKKGLSEVTPAN 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + F ++D+ Y +NP S+++ + + G +I VLGDM E+G+ Sbjct: 319 NRS----SIIEFEGFDVLDDCYKSNPQSLRSGLKTTKLLG--GYDSKILVLGDMLELGDS 372 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 H + + +I + G Sbjct: 373 EDDLHYQVGSEIDPKDIDYCLFFG 396 >gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 466 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 204/448 (45%), Gaps = 67/448 (14%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL QG S + G H QN + L Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSFVRLPFA-GEHNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 ++ +K L+ +GR + A + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGLAQAQGAKGRLNFIQKAPH----LFIDDTYNANPTSMRAAAQVLLQQN-- 361 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLALK 415 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H LK Sbjct: 362 --GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLK 419 Query: 416 ------DALP---RSIHVHYSETMDGLF 434 +ALP I H ++M LF Sbjct: 420 AFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 457 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 134/434 (30%), Positives = 212/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+S+P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSISVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEISYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QGS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] Length = 467 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 130/452 (28%), Positives = 211/452 (46%), Gaps = 46/452 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR FFA++G DGH F AV+ GA L+V + + + V+ Sbjct: 32 VQTDSRLSTAGSIFFALRGETTDGHLFAHTAVENGATLIVAERAL-----DIDVAQIIVN 86 Query: 90 DVLGALNKLA--VAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D + AL LA V AR+R ++A+TGS GKTTTK ML L +T A GS+NN Sbjct: 87 DGVTALQALARAVVARVRENGQLKVLAVTGSNGKTTTKNMLRTILEREGETVAPKGSFNN 146 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G P+T+ + + + E+G +G+I L +V P + ++ + AH+ F Sbjct: 147 DVGAPITMLGVTNSSKYLVVEMGADGIGDITRLQSIVMPDVGIVLMVGLAHIGKFGDAAT 206 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 A AK+E+ L T LNYDD + ++ A T+ FG ++D + + Sbjct: 207 TALAKSEMVTALPPQSTAVLNYDDGRVRAMAPQTEA----TVNFFGLDSHSDVWADEIEA 262 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + ++ + + + V +G H N L + L V + AL Sbjct: 263 SARGTAFDLHVADEVVPVQLRILGEHHVTNALAAITAARALGIPVQRSAVALESID---- 318 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMG 382 R +R+R L + G T+I+++YNA+P SM AA+ L Q + P E R +AVLG++ E+G Sbjct: 319 RAERWRMELLEAPGGITVINDAYNASPDSMAAALKTLVQVVGP--ENRSVAVLGEIAELG 376 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---------- 432 E + H + ++ N+ + + G + H+H + ++G Sbjct: 377 EYANEEHDRIGRLIVRLNVQKLIVVGHA----------ARHIHNAAGLEGSWDGESVLVD 426 Query: 433 ----LFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + ++ L GDVV+VKSSNS G L Sbjct: 427 NVEEAYAVLREELRGGDVVLVKSSNSAGLRHL 458 >gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 455 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 208/444 (46%), Gaps = 19/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I+ F IKG DGHDF+ A++ GA + I V Sbjct: 24 ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ LA + T++ ITGS GKTTTK+M+ L+ Y ++NN Sbjct: 81 EVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + E+GM G++ L+ L RP +AVIT I AH+ F ++I Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L++ G N D E L A+ A + +FG + + + Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 S+ ++ G E IG H N + + +V + D I A L+ F P Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDGEIAAGLANFVPTAN 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + + + I YN+NP ++KA + Q+ GRRIAVL DM E+G S Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440 H LA L I+ ++L G + L AL +++H + + M L ++S Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQNLHYYPEDEMSHLIDDLKSD 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 + D+V++K S+ R+++ L Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454 >gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 449 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 137/441 (31%), Positives = 209/441 (47%), Gaps = 25/441 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88 + DSR I F + G DGH+F A GA + + + G L IPV Sbjct: 25 VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIQPPQGILVIPV--- 80 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D + A +LA A + + IIAITGS GKTTTK+M+ ++ +TY G++NN +G Sbjct: 81 KDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTYKTQGNHNNELG 140 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ P D I E+GM H GEI L+ L P A IT I AH+ N E IA Sbjct: 141 VPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAK 200 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI GL+K G + D+ + +TI +FG ++ D Q ++ + Sbjct: 201 AKMEITAGLKKDGFFMIPVDEPLLDPFVPNL----TQTIETFGLTE-GDLQGDIVEESQD 255 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q+ V ++ V +G + +N L+ +G+ + + L+ F + R Sbjct: 256 QTIFTVAGTTFTLPV----LGGYNVKNALIAIGLGRHFGVSNEAIKEGLAHFQLTKNR-T 310 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 ++ A N ++ + YNANP +M + ++ EGRRIAVL DM E+G S Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPL--EGRRIAVLADMLELGPDSAQM 366 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHY--SETMDGLFLFIQSSLVD 443 H +A L + V+L G + AL+ L P + V Y ++ L ++ +L Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLAQSPLADKVRYFATDEKPQLIASLKETLEP 425 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 D +V+K SN G +++ L Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446 >gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] Length = 470 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 211/454 (46%), Gaps = 39/454 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTG--------TIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 A AK EI GL +G T+ L N D F +L KS A I + +++ Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLLLGNIDGDFRQLTFGKSEAAEIYPLEIRAEAEGTS 276 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAI 314 F + W+ +E+ IG H N + + + I + +A+ Sbjct: 277 F-VTNWE--------------PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSAL 321 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 K + E R +++++YN++P ++K + + +G+ ++ V Sbjct: 322 KNM------ERSKSRLEWITTNSGARILNDAYNSSPTALKTVLKTFMHMDSNGK-QKYLV 374 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMD 431 L DM E+G+LS H + AEVL I+ ++L G + A I + + +T + Sbjct: 375 LADMLELGDLSTKLHQESAEVLENDTIAKIFLYGDAMKAFGAVAEAKIGQGKLQHFDTKE 434 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L + + S + + ++VK S G ++ L+ Sbjct: 435 SLEMALLSEITGNEWILVKGSYGMGLKDVVENLI 468 >gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] Length = 457 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 133/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +G+ VVV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVAQGSVAVVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVSGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] Length = 469 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 52/475 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A+ G +G P V G + DSR + F A G DGHD+ Sbjct: 1 MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 A+ GA + V+ T V+ + P+ V D L A+ +LA A R T+I +TGS G Sbjct: 60 AISAGA-VAVLGTREVSGV-----PMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + + + + E G +G +R+L Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD + + ++ Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPSDGLAVLNADDPRVDAMASR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 + A + +G+S+ AD + S+ V +G + V G+ G H N Sbjct: 234 TRA----RVVRYGESERADVRAVDVTLDGRGRPSYTLVTPEGSAP--VRLGLTGRHQVSN 287 Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + + + D+ A+ L + +R T+ID+SYNANPAS Sbjct: 288 SLAAAAVGRELGLPLPDLAAALNELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A+ L+ + GEGR +AVLG M E+G+ H + + + + + + G Sbjct: 343 TGVALRALASM--RGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG---- 396 Query: 413 ALKDALPRSIHVHYSETMDG------LFLFIQSSLVD--------GDVVVVKSSN 453 + A P +H T G + L Q++ V+ GDVV+VK S Sbjct: 397 --EPAAP----IHEGATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445 >gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 1110 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 124/410 (30%), Positives = 202/410 (49%), Gaps = 31/410 (7%) Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +KG LV+ + G V + AL KLA+A R + +I +TGS Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQY----LEVRNTFTALIKLALARRAAFRGRVIGVTGS 426 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKTT M+T L + Y I ++N+ GVP ++A +P + + E+GM I Sbjct: 427 VGKTTVCSMVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTARYAVIEMGMGAKRTIL 486 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LVRPH AV+T I H+ + + + K EI G+E GT+ LN D ++F L Sbjct: 487 PKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVESGGTVVLNRDSAYFATL- 545 Query: 237 AKSHALGIK----TIYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVH 285 H L ++ I +FG+ AD C+E QS ++V++ ++ + Sbjct: 546 ---HGLALQRSDINILTFGQHPQADI-------CAEEIVLEPVQSVIQVRVFQQTFKYTL 595 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-FFTLIDE 344 G HMA N L+ + ++ D+ T++ + R ++ R G ++D+ Sbjct: 596 SLPGMHMALNSLIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGARIQILDD 655 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 S+NANPAS+++ + +L + P EGRRI VL DM EMG + +H LA+ ++ I + Sbjct: 656 SFNANPASIRSNLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDINDSQID-I 714 Query: 405 WLS-GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 +LS G + AL + I H H++ +++ L F+Q + GD+V K S Sbjct: 715 FLSIGDYCHALDQLIENRITHKHFN-SVEALETFLQEVVRSGDIVSFKGS 763 >gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] Length = 480 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 139/469 (29%), Positives = 207/469 (44%), Gaps = 42/469 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + FFA+KG +D HD+++ AV++G VVV +++P Sbjct: 25 VETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVEQGNTAVVVE-----HACEVNVPQI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML------TIALSSIKKTYA-- 138 V D AL LA + +AITGS GKTT KEM T S++K T Sbjct: 80 VVADTRLALGHLAQWLKSELNPLTVAITGSSGKTTVKEMTASILQQTARKSAVKNTEVFF 139 Query: 139 ----------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 G++NN IGVPLTL R+ + F + ELG +H GEI + T LV Sbjct: 140 TGSNHGKANFADAVLFTQGNFNNDIGVPLTLLRLQPEHRFAVIELGANHAGEIDYTTKLV 199 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A+I +A AHL F ++ +A AK EI+ GL + G +N D + L + + Sbjct: 200 RPDVALINNVAAAHLEGFGSLDGVARAKGEIYRGLSEDGIAVVNSDCHYLSLWDKE---I 256 Query: 243 GIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + SF + AD+ + S + S+++ +G H N L Sbjct: 257 AGHRMQSFSATNPEADYWAENIRMTESGSAFTLHSPDGSIDISLPYLGAHNIDNALAATA 316 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A++ L P +GR N L+D++YNAN S+K+AI VL Sbjct: 317 LAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN---LLLLDDTYNANVDSLKSAIGVLK 373 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 E RI +GDM E+GE S+ H +A N+ V G + A + Sbjct: 374 NY----EAFRILAVGDMAELGENSRECHRQVANYAKSANLDCVACFGAETAVIAQACNGT 429 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468 + + L I L + VV+ K S S +I +L +F Sbjct: 430 HFTDKTVMANYLAAVIDEKLKNNQRVVLLAKGSRSQKMEDVIAILKRKF 478 >gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 215/448 (47%), Gaps = 21/448 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + FFA+KG H+D H ++ AV++G VV + I L Sbjct: 25 VENVSTDSRQSISKGLFFALKGEHFDAHHYLDKAVEQGCIAAVVERQTNSPIAQLV---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + + G+ Sbjct: 81 -VKDTRLALGQLAKWLREKINPKTVAMTGSSGKTTIKEMTAAILQQSAVDFDDVLFTHGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H+GEI + T L +P +A++ +A AHL F Sbjct: 140 FNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIAYTTALAQPDVALVNNVAAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 ++ +A+AK EI+ GL GT +N ++ + +A+ ++ +++ K AD+ Sbjct: 200 LDGVATAKGEIYRGLTSNGTAIINLAHNYQQKWQAEIADHSVQ-YFAYDNPK-ADYYAEN 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + S+++ +G H N L + + A + L++ Sbjct: 258 IVFSEQGASFLLHTPKGSIQIHSSYLGEHNVSNALAATALAMNVGASLQDVQNGLAMKSQ 317 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR N L+D++YNAN SMK+AISVL + R+ V+GDM E+G Sbjct: 318 VKGRLFPIEPCEN---LLLLDDTYNANVDSMKSAISVLQKYPAF----RVFVVGDMAELG 370 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSL 441 + +Q H ++A+ + V LS + + A+ H +E L I+ L Sbjct: 371 DNTQLCHQEVADFAHAAKLDLV-LSCGNASEVISAVNSGKHFTDKTELASYLISVIKQQL 429 Query: 442 VDGDVVV-VKSSNSCGFYRLINLLLEEF 468 + VVV VK S S +I+LL + F Sbjct: 430 TEQKVVVLVKGSRSMKMENVIDLLKDSF 457 >gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 458 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 139/438 (31%), Positives = 205/438 (46%), Gaps = 27/438 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R++ P F A+ G DGH+F+ AV KGA VVV S+++ V Sbjct: 27 VSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAAGVVVERPF-----SINVTQIVVK 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA+ R + +I ITGS GKTTTK+++ L A ++NN +GV Sbjct: 82 DTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQKYNVCATEKNFNNELGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + GI E+GM LGEI L + RP I +IT I AHL E IA A Sbjct: 142 PLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQENIARA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+ + L G +N + + + + A + +K Y FG + D ++K+ Q E Sbjct: 202 KSELIKNLPGDGVAIINGESPYIKEIVAN---IPVKK-YFFG-HRAGDLYIKKFSQ--ED 254 Query: 270 SWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G E G H A N L + L V K LS E G Sbjct: 255 DGLRFITAGILEEEFFLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEV---ELTGM 311 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R G +I + YNA+P SM+AA+ VL+ +GR+IAVLG+M E+G+ + Sbjct: 312 RLEIQF-IGSMKIIKDYYNASPTSMEAALKVLAGTGQ--KGRKIAVLGEMYELGDFETTG 368 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLV 442 H + EV S + + G + + P++I ++ G FL + L Sbjct: 369 HRRVGEVASKLGVDFLITVGPKAREIGNGALAGGMSPQNIFHFATKEEAGSFLL--NFLK 426 Query: 443 DGDVVVVKSSNSCGFYRL 460 D V++K+S F L Sbjct: 427 PEDTVLLKASRGMKFEEL 444 >gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] Length = 447 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 211/436 (48%), Gaps = 41/436 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 +D R P F A G H DGHD+ A + GA VA++GS +P V+ Sbjct: 31 LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGA---------VATLGSRPTPLPTVVVE 81 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LA V ARLR T++ +TGS GKT+TK++L LSS T A IGS NN + Sbjct: 82 DAQSALQALAAHVVARLRDGLTVVGLTGSQGKTSTKDLLAAVLSSAAPTIATIGSLNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F E+G H+G+I LT LV P IAV+ + AHL F E IA Sbjct: 142 GVPLTMLRADPATRFLALEMGARHIGDIAELTGLVAPDIAVVLNVGQAHLGEFGSREAIA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 K E+ +GL GT L DD +++ + + +FG+ ++AD ++ + Sbjct: 202 RTKGELVQGLAPGGTAVLGADDPRVVAMRSLTDG----PVLTFGRVEHADVRVLDLALDR 257 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ ++ S V +G H A N +D A AL+ + Sbjct: 258 LGRPSFT-LRTADASAPVTLPLVGGHQALNASAAAAAGLAAGVPLDVAAAALATASLSQW 316 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A TL+++SYNANP S +AA+ L+ I GRRIAVLG+M E+G+ S Sbjct: 317 RMELRDLACGA---TLLNDSYNANPDSTRAALDALAAIE---GGRRIAVLGEMRELGDGS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL------FLFIQS 439 ++ H + E Y S + V+A+ +A R I E + L +++ Sbjct: 371 EAEHRAVGE----YAASRADV----VVAVGEAA-RPIADGAGERVVALADNNAAVDWLRG 421 Query: 440 SLVDGDVVVVKSSNSC 455 L G+VV+VK+S Sbjct: 422 HLAAGEVVLVKASRGA 437 >gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 211/446 (47%), Gaps = 23/446 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VD+ L +L +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265 A AK EI GL +G + ++++ S+ G +FGKS+ A+ + L + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LSNINGDFRQLTFGKSEAAEIYPLEIHAE 271 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHP 322 S+ V +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSF--VTNWEPELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKM----- 324 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R + +++++YN++P ++K + + G+ + + VL DM E+G Sbjct: 325 -ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-VLADMLELG 382 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439 ELS H + AEVL I V+L G + A I V + +T + L + S Sbjct: 383 ELSTKLHRESAEVLEKDTIEKVFLYGEAMKAFGTVAETKIGQGKVQHFDTKESLETALLS 442 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 443 EVNGNEWILVKGSYGMGLKDVVENLI 468 >gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 432 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/442 (30%), Positives = 212/442 (47%), Gaps = 32/442 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+++G +V+ A+ G + V+ Sbjct: 16 VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGGDERYIL--VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R + K +I +TG+ GKTTTKE+ LS G+ NNHIGV Sbjct: 74 DVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + D + E G +HLGEI+ L +V P +IT + AHL F E + Sbjct: 134 PKTLLELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193 Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQLRK 262 K E+++ L K GT+F+++D + + H + + S + A F + Sbjct: 194 KGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQICYGSPCDEVLSVEGEVLECAPFLKFR 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 W+ + W EVQ IG + QNML I +VD+ +AL+ + P Sbjct: 254 WRPAGGE-WQEVQTG---------LIGAYNMQNMLAAATIGRTFGVEVDSINRALAAYEP 303 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 K R + N+ L+ ++YNANP SM+AAI + RR+ +LGDM E+G Sbjct: 304 KNNRSQLMETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMVILGDMGELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E S H +A++L HVWL G A + R+ ++++ + ++ Sbjct: 357 ESSWKAHQAIADLLVESGFEHVWLVGPKFKAARHPF-RTF-----DSVEQVKKALEIKKP 410 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 G +++K S+S Y L + L Sbjct: 411 KGYYILIKGSHSTRLYDLPDFL 432 >gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] Length = 427 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 125/407 (30%), Positives = 195/407 (47%), Gaps = 28/407 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI D+R I FF +KG ++DG+ F A+Q+GA VV+ G + V Sbjct: 13 GIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKTIL----V 68 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L AL LA R + + II ITGS GKTT+KE++++ LS+ + G+ NNHIG Sbjct: 69 DDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNLNNHIG 128 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL ++ + + E+G + G+I+ L + P +IT I AHL F +E + Sbjct: 129 VPLTLLQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIITNIGRAHLEGFKSLEGVIK 188 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+F L + G IF N +D SH + + SK +L Sbjct: 189 TKTELFNFLAQNRGHIFANKEDE-----TITSHLPSNTHNHFYNDSKELHGELISLNPFV 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +W E S ++ + +G + N L + I + KA+S + P R Sbjct: 244 NMTWSEPNY--TSSDIHTNLVGEYNFINFLAAIRIGRFFGISAENCNKAISDYQPTNNRS 301 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N TLI + YNANP SM++A+S ++I H +I +LGDM EMG+ + + Sbjct: 302 QVTKTEKN----TLIVDCYNANPTSMRSALSSFAKIDNHA---KIFILGDMREMGDEAPA 354 Query: 388 FHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETM 430 H ++ + + LSGF + L K P +I + ++ + Sbjct: 355 VHEEV-----IQQTIDLRLSGFFIGEEFLKFKGTHPNAIFLKSTDPL 396 >gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] Length = 466 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 216/465 (46%), Gaps = 25/465 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG + F++ IS D+R+I F A+KG +DGHDFI A++KG Sbjct: 18 FTLSQVVEATQGANAHTDNIKFLD-ISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 76 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A G +V V I + VD+ L A LA R R ++AITGS GKTTTK Sbjct: 77 ATGAIVEKGRAVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 131 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + +YNN IG+P TL R+ + + + E+GM LG+I L + Sbjct: 132 EMVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 191 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT + +H+ E IA AK E+ L + LN DD + + + + + Sbjct: 192 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG-- 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 250 -KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 308 RVLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 363 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419 R+IA+LGDM E+G+ S+ H ++ ++L+ S V+ G F K A Sbjct: 364 EGK---RKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 420 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + M + I+ GDV++VK S R++ L Sbjct: 421 TTFRCKSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 462 >gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 440 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/440 (31%), Positives = 205/440 (46%), Gaps = 27/440 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR I + F +KG DGHDFI A GA ++ + V L Sbjct: 26 VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A KLA ++K +IA+TGS GKTTTK+M+ LS KTY G++NN Sbjct: 79 -VDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM H G+I FL+ L +P +AVIT I AHL + E I Sbjct: 138 IGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K I GL G + D + + I FG D + K + Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPDN------QKIIRFGLP-GEDLFITKLVEH 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGI-VSILTADVDTAIKALSVFHPKE 324 E+ E +S+ + G Y+ ML +G+ + A++ A+K + + + Sbjct: 249 KEKLTFETNFLDESITIPVPG-KYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNR- 306 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 ++ A N L+ + YNANP +M+ + I + GR+IAVL DM E+G Sbjct: 307 ---TEWKKAKNGA--DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPS 361 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H D+ + + I V+L G + L + + V Y +D L + + L Sbjct: 362 AAQLHKDILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAVSYFTDLDLLTESLSADLKPT 420 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D V+ K SNS ++ L Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440 >gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-003] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 26 ITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALFSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455 >gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 528 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 214/459 (46%), Gaps = 52/459 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-----ASIGSLSIPVFG 87 DSR A F A G DGHDF+ AV KGA V+ D + GS+ G Sbjct: 41 DSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVLAAPDDAYRKPWTARGSVPTVTVG 100 Query: 88 VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D+L AL+ LA A ARL + T+I +TGS GKTTTK+++ + T A GS+NN Sbjct: 101 DGDLLRALSALATAHLARL-PRTTVIGLTGSAGKTTTKDLIGRLTRELGPTVAPKGSFNN 159 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G P+T+ R D + + E+G +G I+ LT + P I V+ + AHL F +E Sbjct: 160 ELGFPITVLRTDEDTRYLVAEMGARGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEA 219 Query: 206 IASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 IA AK E+ + ++ G LN DD+ + A++ + FG+S +AD Sbjct: 220 IAEAKGELAAAVPESGNCNPDRDGVAILNADDARVRGMAARTKG----RVVLFGESPDAD 275 Query: 258 FQLRKWKQCSE--QSWMEVQLQGKS---MEVVHHGIGYHMAQNML------MTLGIVSIL 306 + + S+ S+ + G+ V +G H N L + LG+ Sbjct: 276 VRAEDVRVGSDGRASFTLLYRDGEGPHRYPVALRLVGEHQVSNALAAAATGLELGLAGEK 335 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQIS 364 A+V LS P ++R A+ + T+++++YNANP SM+AA+ L+ ++ Sbjct: 336 VAEV------LSAAEPD----SKWRMAIGESADGVTVLNDAYNANPESMRAALKTLATMA 385 Query: 365 PHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G R AVLG M E+G+ S H + + NI+ G A+ S+ Sbjct: 386 RARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRLNIAQTVAVGAGAAAIHSGA--SME 443 Query: 424 VHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 Y+ D F+++ GDVV+VK+S + G Sbjct: 444 GSYNGESVAVPDADAALAFVRAGARPGDVVLVKASRAIG 482 >gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 209/448 (46%), Gaps = 36/448 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ IDSR + F AI G + + H FI ++KGA VV + D+ G P V Sbjct: 30 GVVIDSRKVEKDYLFVAIDGENVNAHKFIPDTIEKGALCVVSHEDL----GDTDFPYILV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + AL +A R T++ ITGSVGKT+TKEM+ +S K + +G++NN G Sbjct: 86 ESTGQALLDIAKLYRDSFDVTVVGITGSVGKTSTKEMIASVVSQKYKVHKTLGNFNNEWG 145 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +P+T+ M + I E+G++H GE+R L+ + P I VIT I AHL F E I Sbjct: 146 LPITIFEMDESHEVVILEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQ 205 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+++ + ++ G+I LN DD +LL G+ + FG +++ QC Sbjct: 206 EKSQMIQDMKNGGSIILNGDD---DLLSKMGPVKGVTPVL-FGTNEDC--------QCYA 253 Query: 269 QSWMEVQLQ----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + L+ G++ + + G HM N L + + L D + Sbjct: 254 SGIVPMGLKGTACTIHLPDGEAFDCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIE 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 GR ++ G ++D+ YNANP S KAAI VL GR++AVLG+M Sbjct: 314 AHTTLPGRNN----IISTGSLMILDDCYNANPVSTKAAIDVLDMAI----GRKVAVLGNM 365 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLF 436 E+G + H ++ E + + I V G + ++ + S H+ Sbjct: 366 GELGNNEKELHREVGEYAAKHGIDVVCGIGDLAKEITESAAKGASTETHWFAAKQDFLAE 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + +GD V+VK+S+ F ++ L Sbjct: 426 MHHIIKEGDNVLVKASHGMQFPEIVEQL 453 >gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] Length = 456 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 210/446 (47%), Gaps = 21/446 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+S D+R I F + G +DGH+F AV+KGA V D L + Sbjct: 26 IIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKGA--VATLWDKRHPTPYLDAGI 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ L A KLA + + A ++ ITGS GKT TK++L L + + + NN Sbjct: 84 IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKDILASILKENFRVHNTAKNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP T+ M +D + + E+GM GEI+ LT++ RP IAVIT I +HL E Sbjct: 144 EIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARPDIAVITNIGDSHLLELGTKEN 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKW 263 IA AK EI EGL+ G N DD E+L+ K + + K I G +++D +R Sbjct: 204 IARAKFEILEGLKPDGVFIFNNDD---EVLREVIKEYTITQKVI-KIGTREDSDVIIRPI 259 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E S + S+ IG H N + + I +L + ++ LS Sbjct: 260 RSDEEGSSFSIGEYAYSIPF----IGKHQIYNASVAITIAGLLGMNYGDIVRGLSRVKLT 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R ++ F ++++ Y +NP S+ + I + + G +I +L DM E+GE Sbjct: 316 ---GMRMEL-IHLSSFDVLNDCYKSNPQSLTSCIETVYTMK--GYKNKILILSDMLELGE 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFLFIQSS 440 + H + E + I +V G + + R+ +V+ + ET + + ++ Sbjct: 370 NERKLHFSVGEKIDRNKIDYVICIGDLAKEIYNGANRNFNVNNLFHFETNEEVVNKVREL 429 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 + + +++VK S ++I +L E Sbjct: 430 ISEDTLIMVKGSRGMKLEKIIEMLKE 455 >gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str. MIT 9313] gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/458 (29%), Positives = 219/458 (47%), Gaps = 41/458 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR ++ F + G H++GH F+ A++ VV + +P + Sbjct: 29 VGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVARKDHHPVPE-GLPHW 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A +L + R + ++A+TGS GKTTT+E++ AL+ + + A G+ NN Sbjct: 88 IVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLASAGNNNND 147 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVPLTL + D + E+GM +GEI L+ +P +AVIT I AH+ I Sbjct: 148 VGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSRAAI 207 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE-----LLKAKSHALGIKTIYSFGKSKNADFQLR 261 ASAK EI L+ G I + D E + + + + ++ + AD R Sbjct: 208 ASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRGRVIRVAVQDNQQLEPPEIADLHRR 267 Query: 262 KWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + C + + E+ L+G + + G+ H A N+++ L + ++D ++ Sbjct: 268 PLPKADLVGCVDLAKGELLLEGNAYTLPLEGM--HNACNLMLALAVAR----ELDVCKES 321 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 LS G+ R L G FT++DE+YNA+P +++AA+ +L+ I P GR AVLG Sbjct: 322 LSNLKVDVPGGRSRR--LKVGNFTVLDETYNASPEAVQAALELLA-IQP---GRHFAVLG 375 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----------ALKDALPRSIHVHY 426 M E+G+ S + H +AE V L G V+ +LP H+ Sbjct: 376 TMLELGDQSVALHRQVAE-----RAVQVGLDGLVVVAAGAEAEAMATAAGSLP---HLAV 427 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +Q+ L GDVV++K+S +LI LL Sbjct: 428 VANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465 >gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47368] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 223/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++FL D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLFLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A+N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAVNGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] Length = 458 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 126/396 (31%), Positives = 193/396 (48%), Gaps = 23/396 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SIDSR I F KG DGH F+ A++ GA + D+ L P+ Sbjct: 27 IGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSGAAASLWEKDVPNPPEGL--PII 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L AL LA A R ++ ITGS GKTTTK+M+ LS K G++N+H Sbjct: 85 IVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKDMVANLLSLKYKVQKTQGNFNSH 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + E+GMS GEI L+++ P A+IT I +HL + E I Sbjct: 145 IGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQDLGSREGI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A+AK EI GL++ G +F+ Y + LLK + + +FGK K Sbjct: 205 ATAKMEIISGLKEDG-LFVYYGEE--PLLKERIDKDWKFKVETFGKGTENTLYPLDVKTT 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +V + + EV+ +G H N L ++ + + +A + R Sbjct: 262 DSGSVFKVNAEPDT-EVMLPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQLKLTQMR 320 Query: 327 -----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GKR LN ++YNA+P SM+AAI +LS + G G++I V GDM E+ Sbjct: 321 MEMMEGKRGEKILN--------DAYNASPTSMRAAIGLLSGL--QGYGKKILVAGDMLEL 370 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 G +++H ++ + + I V+ F LA + A Sbjct: 371 GPNEENYHYEVGQEVQKGKIDLVFT--FGTLARQTA 404 >gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes LO28] Length = 447 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 16 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 73 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 74 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 134 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 194 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 249 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 301 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 302 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 360 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 361 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 420 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 421 IKGNEWILVKGSYGMGLKDVVENLI 445 >gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] Length = 485 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 211/455 (46%), Gaps = 44/455 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R+I + F A+ G ++DGHD+I AV +GA +V+ + S IP V+ Sbjct: 58 IATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPI-----STDIPQLVVN 112 Query: 90 DVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D AL +LA R + K T+IAITGS GKTT KEML + T G+ NN +G Sbjct: 113 DTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLG 172 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP+ L + + I ELG +H+GEI + T +V+P +A I I AHL F E I Sbjct: 173 VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQ 232 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKW 263 KAEI+ L + + D F L K SH +G FG N D Sbjct: 233 TKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG------FG---NTDVSASHL 283 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E+S ++ + + ++ G H N L L D++ + L P Sbjct: 284 DVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDINDIVVGLENARPA 343 Query: 324 EGRGKRYRCALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +GR LN G LID++YNANP S++AA VL+ + G ++ VLGD+ E Sbjct: 344 KGR-------LNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQT----GTQVMVLGDIAE 392 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFLF 436 +G+ + S H L ++ I+ + G + V ++ I H D L + Sbjct: 393 LGDAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVAGAQEI--SDISAHAFTDKDSLLQY 450 Query: 437 IQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 +Q L + V+ K S S LIN L+EE Sbjct: 451 LQPYLQEPQAQPCTVLFKGSRSMEMETLINALVEE 485 >gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] Length = 466 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 207/449 (46%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL + S++ + G+ H QN + L Sbjct: 262 TEIELLPQSANFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R + + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] Length = 458 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 215/462 (46%), Gaps = 44/462 (9%) Query: 20 GIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 G VP Q + + DSR + F ++G +DGH F+ A ++G VV D Sbjct: 21 GAVPNLQQRLGPVCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDS--- 77 Query: 78 IGSLSIPV------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 IPV + VDD L A ++A R + ++AITGS GKTTT+E++ AL+ Sbjct: 78 ----DIPVPQSLLHWIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALA 133 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVI 189 + A IG+ NN +GVPLTL + VD + E+GM GEI L+ P IAVI Sbjct: 134 PLGAVQASIGNNNNDVGVPLTL--LGVDEQHAAVVVEMGMRGPGEIERLSRCAEPEIAVI 191 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I AH+ E IA+AK EI L G + + D + A+ + ++ + Sbjct: 192 TNIGTAHIGRLGSREAIAAAKCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVAL 251 Query: 250 FGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +++ L + + + + L S G H A+N ++ + + L Sbjct: 252 VDDANDSEHVADDLGDYNPLTGR----ISLGNDSYNCPLE--GRHNARNFMLAIAVARTL 305 Query: 307 -TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A D + L V P GR ++ + G T++DE+YNA+P ++ AA+ +L+ Sbjct: 306 GVAPAD--LVQLKVEVPG-GRNRKRQI----GSLTILDETYNASPEAVFAALDLLAA--- 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 GRR AVLG M E+G S H ID A L+L + V +G A+ DA R Sbjct: 356 -QPGRRFAVLGTMLELGTDSVGLHRAVIDHAATLNLDGLVVV-ATGAEAKAMSDASSRWP 413 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ET + + L GD V++K+S RL+ LL Sbjct: 414 QFQQVETPEQAAEPLIEWLRPGDTVLLKASRGIALERLLPLL 455 >gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 216/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H+++QA+ + + I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ VA+ P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 A-VVTLSEKEVANH-----PYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVIRFGQGAELEVTDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAA 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 IS + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AISANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 208/454 (45%), Gaps = 39/454 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 26 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFL---------NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 A AK EI GL +G + N D F +L KS A I + +++ Sbjct: 204 AKAKLEITAGLNPSGILIYPHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTS 263 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAI 314 F + W+ +E+ IG H N + + + I + +A+ Sbjct: 264 F-ITNWE--------------PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSAL 308 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 K + E R + +++++YN++P ++K + + G+ + + V Sbjct: 309 KNM------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-V 361 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMD 431 L DM E+G+LS H + AEVL I ++L G + A K I V + +T + Sbjct: 362 LADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFDTKE 421 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L + S + + ++VK S G ++ L+ Sbjct: 422 SLETALLSEINGNEWILVKGSYGMGLKDVVENLI 455 >gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL J1-023] Length = 470 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 210/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI D+R I + F G DGH+F+ A + GA D+ PV Sbjct: 39 ITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGDFRQLTFGKSDEAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A K I V + +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAETKIGQGKVQHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 INGNEWILVKGSYGMGLKDVVENLI 468 >gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] Length = 476 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 207/465 (44%), Gaps = 45/465 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G IDSR + F ++G DGH FI +KGA V+ + G P Sbjct: 28 IQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFEKGALAVLSEEKLENPAG----PYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L A+ K+A R ++ ITGSVGKT+TKEM+ L+ G+ NN Sbjct: 84 LVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTSTKEMIASVLAQKYNVLKTEGNLNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + + E+G+S GE+ L+ + P I VIT I HL N + I Sbjct: 144 IGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDS--------------FFELLKAK--------SHALGI 244 AK E F L G LN DD F+ + KA + L Sbjct: 204 LKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKPAVFYGIEKAAKVAETEEGTKTLAE 263 Query: 245 KTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 KT+Y+ + D K S+++ EV +MEV G H N L + + Sbjct: 264 KTVYAT-NVEAVDLTGTKAAIHYPSKETGGEV-----TMEVTIPIAGEHNVYNALAAVSV 317 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D + + GR +++ T+ID+ YNANP SMKA+I VLS Sbjct: 318 ARELGLTCDEMKRGIESVQTIGGRSN----LIHKNGITIIDDCYNANPVSMKASIDVLS- 372 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---P 419 + GR+IAVLGDM E+G + H + E + I ++ G + A+ Sbjct: 373 ---NAPGRKIAVLGDMGELGAEEKQLHYMVGEHFAGKGIDALYCVGTLSQEITKAVRANS 429 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + VH+ E L + + GD V+VK+S+ GF ++ L Sbjct: 430 SATEVHHYEDKADLIKDLVKEVKSGDTVLVKASHFMGFPEIVKEL 474 >gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2 ,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 473 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 219/475 (46%), Gaps = 30/475 (6%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G S I P V G + IDSR +AP F A G DGHD+ AV+ Sbjct: 5 SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYARRAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V + + +P V+DV+GAL LA A R T++ +TGS GKT+TK Sbjct: 65 -------GAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAGKTSTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L T GS NN IG+P+T + + + E+G +G IR+L L Sbjct: 118 DLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAETEHLVLEMGARGIGHIRYLADLTP 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I ++ + AHL F E IA AK E+ E L + G LN DD + +++ A Sbjct: 178 PRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASRTRA-- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + FG++ AD + K + ++ + E+ +V G H N L + Sbjct: 236 --RVLLFGEAPEADVRGEKVRMTADGRPAFELHTPTGCSDVTMRLYGEHHVSNALAAAAV 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAI 357 L V +ALS + G R+R + + T+++++YNANP S A+ Sbjct: 294 AHELGMSVTEIAEALS----EAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALRAL 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHV 411 + + Q GR AVLG M E+G+ S + H + + N+S + G + Sbjct: 350 AAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQL 409 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + VH S+ + L ++S L GDVV+VK+S S G ++ LLE Sbjct: 410 GAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] Length = 457 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455 >gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 466 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 212/455 (46%), Gaps = 30/455 (6%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V+G + IDSR + F A G DGHD+ AV+ GA V+ + Sbjct: 23 PSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYADQAVRAGAVAVLAQR-------PV 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P V+DV AL LA R AT++A+TGS GKT+TK+++ L T G Sbjct: 76 GVPAIVVEDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S NN IG+PLT + F + E+G +G I +LT L P I ++ + AH+ F Sbjct: 136 SLNNEIGLPLTALTATEETRFLVLEMGARGIGHISYLTDLTPPKIGLVLNVGSAHIGEFG 195 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G E+IA AK E+ E L G LN DD + +++ A + FG+S AD + Sbjct: 196 GREQIAQAKGELVEALPAEGAAILNADDPLVRAMASRTKA----KVILFGESGEADVRAE 251 Query: 262 KWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + S Q + + EV G H N L + L ALS Sbjct: 252 NVRLTDSGQPAFMLHTPSGASEVTMRLYGEHHVSNALAAAAVAHELGMSATEIATALS-- 309 Query: 321 HPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGD 377 + G R+R + + T+++++YNANP SM+AA+ L+ + G+GRR AVLG Sbjct: 310 --EAGSLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGK 364 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMD 431 M E+G+ + + H + + N+ + G + A + VH S+ Sbjct: 365 MAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQA 424 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++S L GDVV+VK+S S G + LL+ Sbjct: 425 AVDL-LRSELRPGDVVLVKASRSVGLESVAQALLD 458 >gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobacterium sp. 21] gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobacterium sp. 21] Length = 437 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/437 (30%), Positives = 213/437 (48%), Gaps = 17/437 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R+I P FFA+ G ++G+ F A++ GA L +V D I I V V Sbjct: 16 ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIV--DEPIPIVDERIEV--VS 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L LA R + + +I +TG+ GKTTTKE+L LS YA G+ NNHIGV Sbjct: 72 NVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ + ++ I E+G +H+GEI FL + RP + +IT + AHL F E + A Sbjct: 132 PLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGLITNVGKAHLEGFGSFEGVKQA 191 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E++E LE+ G +FL D++ L A + Y KS N +L Sbjct: 192 KGELYEWLEEHKGVLFLQGDNNHL-LSMANNKTFKQIITYGLDKSNNISGELLSVNPVLN 250 Query: 269 QSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 W ++ G +VV H G + +N+L + + + + + ++ + P R Sbjct: 251 LGWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPEEINRGITAYSPTNNRS 310 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N T+I + YNAN +SM AA+ L I H E +++++LGDM E+GE + + Sbjct: 311 QITQTEKN----TVICDYYNANASSMWAALDNLESI--HAE-KKVSILGDMFELGEEAPT 363 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L E + + G + + + Y E++D +Q +D V Sbjct: 364 EHRRLIERIRGMKLYRKIFVGRNFFGQRQ---EEHDIEYYESLDAAKQALQEKPLDNTTV 420 Query: 448 VVKSSNSCGFYRLINLL 464 ++K+S F L+ L Sbjct: 421 LLKASRGMAFEGLLQYL 437 >gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB900] Length = 466 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 206/449 (45%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++A+FQL QG S+ + G H QN + L Sbjct: 262 TEIELLPQSANFQLHT-------------PQGSSLVRLPFA-GEHNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R + + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/442 (29%), Positives = 220/442 (49%), Gaps = 15/442 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIPVFG 87 I IDSR P F AI G + DGH +I A G +V+ D++ + SI Sbjct: 34 IVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILDQLDGSSIVC-- 91 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ A+ +LA + + ++ ITGSVGKTTT++M+ +S+ +T + NN Sbjct: 92 VDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQF 151 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ + + + E+GMS GEI +L +VRP IAVI+ I +H+ + E I Sbjct: 152 GVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHLGSQEGIF 211 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI + + + +N DD + L+A+ A+ ++ SFGK L+ + Sbjct: 212 KAKMEISDYFSEDSCLIVNGDDEYLSKLRAEKDAISY-SLCSFGKDWKNTIVLKSIENLD 270 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ V+L+ K E +G H N + + + L ++D + L F R Sbjct: 271 NKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFVATGDR- 329 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +N G + +I++ YNA+P SM A++ VL + + + R++A+LGD EMG+ + Sbjct: 330 ---QNIINTGKYLVINDVYNASPDSMIASLKVL---ALNKDRRKVAILGDCLEMGDYEEE 383 Query: 388 FH--IDLAEV-LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H + L V S I+ + F + ++ ++++ +T L +++ L D Sbjct: 384 GHRRVGLQSVRRSDVIITQGKAARFIGIEAQEHGFDLSNIYHFDTKKELIEDLKNILEDQ 443 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D ++VK+S F ++N L E Sbjct: 444 DAILVKASRGMAFEDIVNYLKE 465 >gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] Length = 453 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 218/449 (48%), Gaps = 27/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+RSIA F A+ G +D H+F AV GA ++V + +++P Sbjct: 24 IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERAL-----DVNVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + AL +L + +AITGS GKTT KEM+ LS+ + G++NN Sbjct: 79 VVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D+ + ELG +H+GEI + LV+P +A++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVGLVKPDVALVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRK--W 263 AK EI++GL T +N D L ++ L K++ +F ++ +ADF R Sbjct: 199 KRAKGEIYQGLSAGYTAVVNLDSQGGALWQS---VLADKSVKTFSVTEHSADFYPRDIVL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E S++ V G + V IG H N L + + A + L+ H Sbjct: 256 NAAGEASFVLVTPIG-DVAVKLGIIGKHNVGNALAASALAIEMGATLADIQHGLA--HLS 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +G+ L TLID+SYNA+ +MKAA+ +L S R +LG+M E+GE Sbjct: 313 KVKGRVDVTELTD-HITLIDDSYNASVPAMKAAVDLLGGFS----ATRWLILGNMAELGE 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + E + + +V G + D H++ D + +FI+ L Sbjct: 368 ESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDVCHGR---HFASHQD-MIMFIEQHLEQ 423 Query: 444 GD----VVVVKSSNSCGFYRLINLLLEEF 468 V++VK +NS G +++ L E++ Sbjct: 424 QPDRTHVLIVKGANSAGMSKIVAALKEKY 452 >gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces flavogriseus ATCC 33331] Length = 472 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 217/478 (45%), Gaps = 56/478 (11%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 Q H + + + IDSR + F A G DGHD+ AV+ GA V+ Sbjct: 16 QPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAERAVEAGAVAVLAAR-- 73 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + +P VDDV+ AL LA AA R T++A+TGS GKT+TK+++ L Sbjct: 74 -----PVGVPAIVVDDVVAALGALARAAVERLGTTVVALTGSAGKTSTKDLIAQILERKA 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T GS NN IG+PLT R + + E+G +G I +L L P I ++ + Sbjct: 129 PTVWTPGSLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYLAGLTPPRIGLVLNVGS 188 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AH+ F E IA AK E+ E L + G LN DD + +++ A + FG++ Sbjct: 189 AHIGEFGSREAIAQAKGELVEVLPEDGAAVLNADDPLVRAMASRTKA----RVILFGEAP 244 Query: 255 NAD---------------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +AD F L CS+ + ++L G+ HH A + Sbjct: 245 DADVRGENVRLTDDGRPAFALHTPTGCSD---VTLRLYGE-----HHVSNALAAAAVAHE 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAI 357 LG+ AD + LS R+R + + T+++++YNANP SMKAA+ Sbjct: 297 LGMSVTEIADALSGAGTLS----------RWRMEVTERPDGVTVVNDAYNANPESMKAAL 346 Query: 358 SVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------ 408 L+ + + GR AVLG M E+G+ S + H + + N+S + G Sbjct: 347 RALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGQEASW 406 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + A + VH S+ + L ++S L GDVV+VK+S S G ++ LLE Sbjct: 407 LQLGAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVALALLE 463 >gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes FSL R2-561] Length = 470 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 470 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Micromonospora sp. L5] gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora sp. L5] Length = 469 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 52/475 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A+ G +G P V G + DSR + F A G DGHD+ Sbjct: 1 MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 A+ GA + V+ T V + P+ V D L A+ +LA A R T+I +TGS G Sbjct: 60 AISAGA-VAVLGTREVPGV-----PMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + + + + E G +G +R+L Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD + + ++ Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPDDGLAVLNADDPRVDAMASR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 + A + +G+S++AD + S+ V +G + V G+ G H N Sbjct: 234 TRA----RVVRYGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAP--VRLGLTGRHQVSN 287 Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + + + D+ A+ L + +R T+ID+SYNANPAS Sbjct: 288 SLAAAAVGRELGLPLPDLAAALNELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A+ L+ + GEGR +AVLG M E+G+ H + + + + + + G Sbjct: 343 TGVALRALASM--RGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVG---- 396 Query: 413 ALKDALPRSIHVHYSETMDG------LFLFIQSSLVD--------GDVVVVKSSN 453 + A P +H T G + L Q++ V+ GDVV+VK S Sbjct: 397 --EPAAP----IHEGATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445 >gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes Finland 1988] Length = 466 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 35 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 92 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 93 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 152 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 153 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 212 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 213 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 267 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 268 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 320 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 321 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 379 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 380 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 440 IKGNEWILVKGSYGMGLKDVVENLI 464 >gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] Length = 459 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/450 (29%), Positives = 217/450 (48%), Gaps = 25/450 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + F ++G DGH ++ A GA + +D I + P+ Sbjct: 26 VTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTNGAVASLWASDH--EITDQTHPLL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 V+D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 83 VVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVTKTYA---NF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GM ++ FL+ LV P IAVIT I AH+ F Sbjct: 140 NNEIGVPVTLLNMESNTEAVVVEMGMDRFDQLDFLSKLVNPDIAVITMIGEAHIEFFGTR 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++IA AK EI GL++ GT+ N D+ LL+ + L + + FG+ + + Sbjct: 200 DKIADAKMEITHGLKEDGTLVFNGDEP---LLEERVKDLTQRQM-RFGRQLSNNLYATSV 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q V + E +G + N L + + IL +AL+ Sbjct: 256 HDEPRQLSFTVN-EWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELT 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + + + ++ + YN+NP + K + +++ +GRRIAVLGDM E+G+ Sbjct: 315 ENRAEWVKGKNGE---QILSDVYNSNPTAAKEVLKTIAETPV--DGRRIAVLGDMLELGD 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFI 437 + H LAE + I+ V+L G + LKD L IH + + + L + Sbjct: 370 AAPKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADL 429 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++L D+V++K+S+ ++ L E Sbjct: 430 TATLTGEDIVLLKASHGIHLEEVLTALKAE 459 >gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 451 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/476 (29%), Positives = 222/476 (46%), Gaps = 45/476 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + L++ + + I +GI D+R I P E F A +G +DGH+FI A+ Sbjct: 6 TLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIA 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V+ D + +PV V + L A KL R R +I +TGSVGKTTT Sbjct: 66 RGAIAAIVDDDYE----NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L + G+YNN IGVP TL + + D+ + E+ M G+I L + Sbjct: 122 KELIAAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELAQIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT + AH+ E IA AK E+ + K LN+D+ LL A + Sbjct: 182 RPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNP---LLMATAAKF 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++G S D Q + + +EV + + G H A N L L + Sbjct: 239 WSGEVLTYGLS-GGDVQ----GSLVDNAIVEV----AGLRLPLPLPGRHNATNYLAALAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + + +SV P GR +R+ + ++DE+YNA P +M AA+ +L+ Sbjct: 290 AKVLGIEWSSLQAGVSVNMPT-GRSQRFSLPND---VLILDETYNAAPEAMLAALQLLAD 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--------- 413 R+IAVLG M E+GE S H + E + ++ L G VL Sbjct: 346 TPGK---RKIAVLGAMKELGERSAQLHQRVGET-----VRNLKLDGLLVLVDGEDAEAIA 397 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + +P +++ + L F+Q GD ++ K+++S G R+++ L EF Sbjct: 398 RSAEGIPSECFATHADLVARLTTFVQG----GDRLLFKAAHSVGLDRVVSQLRAEF 449 >gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 485 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 140/482 (29%), Positives = 226/482 (46%), Gaps = 48/482 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + DLL+ G + V V ++ DSR + P + A G DGH FI A G Sbjct: 5 SLTDLLEITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDGARAAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSK--ATIIAITGSVGKT 120 A L + + P V+D + A+ K+A + + L++K A ++ ITGS GKT Sbjct: 65 AVLSLAER-ITHDEERREHPAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITGSAGKT 123 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++L LS T + IGSYN +GVPLT+ + + + E+G + +G + +LT Sbjct: 124 TTKDLLAGILSQAAPTVSPIGSYNGEVGVPLTVFSATEETKYFVIEMGATGIGHLNYLTD 183 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V PH+ V+ + AH F G+E I AK E+ E L+ G LN +D +++++ Sbjct: 184 MVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEALDTEGIAILNAEDPRVARMESRAR 243 Query: 241 ALGIKTIYSFG----KSKNADFQLRKWKQ---CSEQSWMEVQLQ---GKSMEVVHHGIGY 290 + + FG K +NA W + + E+ L+ G S + +G Sbjct: 244 S----QVRFFGTGAVKPENAGV----WASDVVVNAEGQPELTLEFPNGYSKRITSGLLGR 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCAL--NQGFFTLIDESY 346 H N+L + L D+D + A + EGR G R+R ++I+++Y Sbjct: 296 HHVSNILAAA--NAALALDIDPELIAAGL----EGRAAGSRWRMERLERADGVSIINDAY 349 Query: 347 NANPASMKAAISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 NANP SM+AA+ L+++ +G R AVLG+M E+G+ S H L + NI Sbjct: 350 NANPESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLGRMAVRMNIK 409 Query: 403 HVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + + G K A ++ +Y E ++ ++ L GD+ + KSSN Sbjct: 410 KLVVVG---RGAKPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGDIALFKSSNGA 466 Query: 456 GF 457 G Sbjct: 467 GL 468 >gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2846] Length = 457 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] Length = 465 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/393 (31%), Positives = 190/393 (48%), Gaps = 30/393 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++ +A G G P+ ++ G++IDSR + F AI G + H FI + Sbjct: 15 TLRNITKACHGEYRG--PENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIPDTI 72 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KGA V+ + D+ G P V+ AL A R ++ ITGSVGKT+ Sbjct: 73 KKGAMCVISHEDL----GETDFPYILVESTGQALLDTAKLYRDSFDIKVVGITGSVGKTS 128 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ LS + +G++NN G+P+T+ M + E+G++H GE+R L+ + Sbjct: 129 TKEMIASVLSQKYCVHKTLGNFNNEWGLPITIFEMNEKHQVAVLEMGVNHFGEMRRLSSV 188 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P I VIT I AHL F E I K+++ + ++ G+I LN DD +LL+ Sbjct: 189 ASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGSILLNGDD---DLLRDMGPV 245 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMT 299 G+ + FG KN F + S + L G+S + + G HM QN L Sbjct: 246 KGVDPEF-FGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCIVPLPGAHMVQNALAG 304 Query: 300 LGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + A++ I+ L GR + ++D+ YNANP SM+A+ Sbjct: 305 TAVGYQLGLTPAEIKAGIEGLPSI---PGRNN----IIQTDKIIILDDCYNANPISMQAS 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + VL+ GR++AVLGDM E+GE + H Sbjct: 358 LDVLNMAI----GRKVAVLGDMGELGETGKELH 386 >gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36] gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36] Length = 456 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 217/442 (49%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L++L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSNLAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G ++S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] Length = 424 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 192/385 (49%), Gaps = 32/385 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NG+ D+RS+ + +FA+KG +++G+ F A++ GA L +V+ + S+ Sbjct: 14 NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRSVL----- 68 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R II ITGS GKTTTKE++ LS A G+ NNHI Sbjct: 69 VDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNLNNHI 128 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + GI E+G +H GEI+ L + +P+ IT AHL F G E + Sbjct: 129 GVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188 Query: 208 SAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+E++ L E +F+N D E+ +S + KT FG S++ ++ Sbjct: 189 KGKSELYNYLRENNELVFINDQD---EIQVRQSANIVSKT---FGSSQS------EYPVY 236 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E +++ + + IG + N+ + + + + + + + P R Sbjct: 237 LEDGSGNLKITVGETTITSNLIGTYNFSNIAVAMAMGNHFDVPLTHIKNGIEKYVPSNNR 296 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + +++ + +I ++YNANP SM AA+ L + IA +GDM E+GE S+ Sbjct: 297 SQ----IIDKDTYKIILDAYNANPTSMAAALKNLQATGTNA----IAFIGDMFEVGETSK 348 Query: 387 SFH---IDLAEVLSLYNISHVWLSG 408 + H +DLA L NIS V+ G Sbjct: 349 AEHQAILDLAHNL---NISKVYAIG 370 >gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] Length = 465 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 193/389 (49%), Gaps = 11/389 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D + I G I + + ISIDSR+I E FFAIKG +DGHDF++ A++ Sbjct: 3 IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRA 62 Query: 64 GAGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VV+ + V ++ + GV+D AL LA R +I ITGS GKTT Sbjct: 63 EAVGAVVDNEQVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTT 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+++ L + KT G+YNN G+PLTL R+ + + EL M LG+I+ L + Sbjct: 123 TKDLVASVLETKFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGDIKTLCQI 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P I V+T + HL E IA AK+E+ E L TGT LN DD + + ++ A Sbjct: 183 AQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQMADETKA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I +G+ + Q + E V Q + + G + N L + Sbjct: 243 ----EILYYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAV 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ L +++ + L+ P + G R + TLI+++YNANP SM+A + +L Sbjct: 299 GVGLKLGLNINEIQQGLA--EP-DLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLL 355 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH 389 I +G IAVLGDM E+G ++ H Sbjct: 356 VDIGTD-KGGLIAVLGDMLELGSAAEEAH 383 >gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] Length = 450 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 136/456 (29%), Positives = 216/456 (47%), Gaps = 44/456 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ID+R + F A+KG +DGHDF +AV GAG ++V+ ++ + P Sbjct: 21 ITEVTIDTRQVTGGCLFVALKGERFDGHDFAENAVAAGAGALLVSKRLL-----VGAPQL 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN Sbjct: 76 VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNND 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ ++ AHL F + + Sbjct: 136 IGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGSLAGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLR 261 A AK EIF GL GT +N D + + + H K ++ F D ++R Sbjct: 196 AQAKGEIFAGLPANGTAIINADSNDWPHWQETLHH---KRVWRFSSQAGEDIDFFASEVR 252 Query: 262 KWKQCSE--------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 Q + +E+ L G+ H+ A + M++G AD+ Sbjct: 253 ITAQATHFTLHSPFGTQAIELPLPGR-----HNIANALAAAALAMSVG------ADLAAV 301 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L+ GR + A+ + L+D+SYNAN SM AA VL+++ G R+ Sbjct: 302 RQGLTQLQAVPGRLFPIQLAVGK---LLLDDSYNANVGSMTAAAQVLAEMP----GYRVM 354 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 V+GDM E+G+ + H + E + V G L DA H +T+ Sbjct: 355 VVGDMAELGDTAIDCHRQVGEAAKHAGVDKVLSVGKLSQTLSDASSCGEHFQDKDTLAAR 414 Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ ++ V++K S S ++ L E+ Sbjct: 415 VSELLLEHPII---TVLIKGSRSAAMENVVRALQEK 447 >gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/477 (28%), Positives = 225/477 (47%), Gaps = 45/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + L Q QG + + +S DSR I F A+KG +D H+F V+ G Sbjct: 5 TLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQVVEAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V+ + ++ P V+D A+ ++A R +SKA ++ +TGS GKT+ KE Sbjct: 65 ATALLVDHQL-----DVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGKTSVKE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L T G+ NN IGVPLTL R+ + F + E+G +H EI + T++V+P Sbjct: 120 MTASILGQRGNTLYTAGNLNNDIGVPLTLFRLTDEYQFAVIEMGANHPHEIEYTTNIVKP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ + AHL+ F E +A AK EI++GL + GT +N DS+ + + S Sbjct: 180 ETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTAIVNL-DSYSDKWQFGSR---- 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T++ + ++ ADF + + + +E+ G H N+L + Sbjct: 235 QTVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIANVLAASALAI 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A ++ + ++ GR R + + ++D++YNAN SM AAI+VL+++ Sbjct: 295 SVGATLEDIKQGIATTKAVPGRLFPVRLSDTK---VVLDDTYNANDGSMIAAINVLAKMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFH---------IDLAEVLSLYNISHVWLS----GFHV 411 G RI V GDM E+G+ + H L +VLS+ +S + G H Sbjct: 352 ----GYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSEIISQSSERGEHF 407 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +D L R I L Q+ +V ++VK S S ++N L E F Sbjct: 408 TVKQDLLTRLIP-----------LAQQNDVVS---ILVKGSRSSAMEDVVNALKECF 450 >gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963] gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963] Length = 870 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 118/399 (29%), Positives = 191/399 (47%), Gaps = 24/399 (6%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL A QG Q G S D+R I P E F A++G DGHD++ A+++GA ++ Sbjct: 7 LLAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLL 66 Query: 70 VNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V T + S+ I V+D AL A R + TIIA+ G VGKT+ K Sbjct: 67 VETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E + LS T+ +YN+ +G+PL+L R+ ++ + ELG H GE+ L +V+ Sbjct: 127 EAIASVLSRNYATFRSWKNYNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMVK 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHAL 242 PHI ++T +AP L F +E +A +E+ L G +LN D+ E++ Sbjct: 187 PHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDARLVEIVAHYQQQR 246 Query: 243 G--IKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + I G + + Q+R W+ S +E + + ++ + +G ML Sbjct: 247 GSAVPDIRPLGIREINETQIRVGWEGLS--FTLEQEGEMGTLTLASRLLGRQHISTMLAA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN--QGFFT--LIDESYNANPASMKA 355 I + +AL P EGR LN G + L+D+++NA+P S+ A Sbjct: 305 YRIGRACGMSAEEVSEALEQLGPIEGR-------LNPLPGVYESRLLDDTHNASPGSVLA 357 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + L +++ G G+RIA+LG+M +G ++ + E Sbjct: 358 GLQALDELTNEG-GKRIAILGEMLNLGYYQDDWYEQIGE 395 >gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 460 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/382 (31%), Positives = 193/382 (50%), Gaps = 13/382 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ D+R I P+ F A+ G ++D H F+ A+ KGA +++ IP Sbjct: 30 IHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCYPK---NVIPQI 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + AL K+A R ++ AT+IAITGS GKT+ KEM + L + T + + NN+ Sbjct: 87 IVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGNTISTFQNLNNN 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL + + I ELG ++ +I + T + +P+IA+I I +HL+ F + + Sbjct: 147 IGVPLTLLNLNKSHKYAILELGANYPKDIEYTTKITKPNIALINNIYHSHLAGFKSLFGV 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EIF GL K G N D +++ K K + L K I +F KN+ Sbjct: 207 AQAKQEIFLGLRKNGIAIYNKDSNYWS--KWKKNLLTQKII-NFSIKKNSTIFASNITTS 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ S ++ + V +GYH N L I + ++ LS + R Sbjct: 264 NQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINIPLEIIKIGLSSLPILKNR 323 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + R LN+ + T+I+++YNAN ASM AI +L IS G ++ V GDM E+G+ Sbjct: 324 LQIIR--LNK-YKTIINDTYNANTASMIVAIKILENIS----GYKLFVAGDMLELGKNDV 376 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 +H + + NI+ V+ G Sbjct: 377 LYHKIIGNTIYNSNINEVFSIG 398 >gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lautropia mirabilis ATCC 51599] gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lautropia mirabilis ATCC 51599] Length = 471 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 211/458 (46%), Gaps = 38/458 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GIS DSR++ P + + A++G +DGH FI A+ GA V+ T++ + +P Sbjct: 25 TGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDAGAAAVL--TEVFPE--RVRVPTLW 80 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYN 144 V D AL LA R R + +IA+TGS GKTT KEM+ +A + +A G++N Sbjct: 81 VPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAKEMIAAILVAHLGAEAAFATRGNFN 140 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLTL R+ G+ E+GM+H GEI L + +P +A++ H G E Sbjct: 141 NDIGVPLTLLRLSDAHRMGVVEMGMNHPGEIAGLAAMTQPSVALVLNAQREHQEFMDGPE 200 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQ 259 A +F L +G DD + +A + + + +FG + AD Q Sbjct: 201 ATARENGTVFGALAASGVAVFPGDDPCTPIWQALAQG---QRVLNFGLVADEAALEADVQ 257 Query: 260 LRK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + +L +++ + G H +N L L Sbjct: 258 STPDAGTPYLSVAAARDARPEHFRARLGEALVDIRLNIAGRHNVRNALAAAACTLALGVP 317 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGE 368 V+ ++ L+ F P GR +R A QG LID++YNANP SM+AAI VL+ Q +P Sbjct: 318 VEAIVRGLAAFEPVSGRLRRTHTA--QG-VPLIDDTYNANPDSMRAAIDVLADQPAP--- 371 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 R+ V+GDM E G +++FH ++ E I VW G + A A V Y E Sbjct: 372 --RLMVMGDMGETGAQAEAFHREVGEYAVSRAIEQVWAVGKDMKAAAQAG----GVQYWE 425 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 T++ L + ++VK S R++ E Sbjct: 426 TVEALLAEHPQAPAGIASILVKGSRFMKMERVVRAWAE 463 >gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 457 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/478 (29%), Positives = 220/478 (46%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + + + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ VA+ P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 A-VVTLSEKEVANH-----PYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L DS E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADSIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGPGAELEITDLVERKNSLTFKANFLE---QALDLPVT----GKYNATNAMIAAY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIFYGEDIAELSQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVFYFKKTADEDQFEDLVKKVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila str. Corby] gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila str. Corby] Length = 406 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 131/420 (31%), Positives = 196/420 (46%), Gaps = 19/420 (4%) Query: 48 GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 G +DGHDFI A KGA VVN I + IP F V L AL K+A A R Sbjct: 2 GERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQFVVVSPLMALAKIAAAHRQEMS 57 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 IIA+TGS GKTT KEM+ L + ++A G+ NNHIGVPL++ + + +FEL Sbjct: 58 CPIIALTGSNGKTTVKEMIATILP--QPSHATKGNLNNHIGVPLSMLALNKQHRYAVFEL 115 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G +H GEI +V+P +++I IAPAH+ F I+ +A +K EI +GL TG +N Sbjct: 116 GANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPTGVAIVND 175 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHH 286 DD++ + K I F AD + + ++ + L +E+ Sbjct: 176 DDAYAHFW---DDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQ 232 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H +N L + + + L+ F +G R Q T+ID++Y Sbjct: 233 VPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKG---RMTMLSGQNQSTVIDDTY 289 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S+ A+ VLS GR+I V GDM E+GE + H ++ I + Sbjct: 290 NANLRSVLTALEVLSGRP----GRKIFVFGDMGELGEWTTQHHREVGIAARQLGIDKLMS 345 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G H A H+ + + L +++ L V+VK S S +++ L++ Sbjct: 346 CGLHSELASQAFGEGGQ-HFC-SQEELIEVVKNDLTPDTTVLVKGSRSSAMENVVHRLVQ 403 >gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale M104/1] Length = 464 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/479 (29%), Positives = 219/479 (45%), Gaps = 42/479 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ +A +G IG Q + G IDSR + F IKG DGH FI ++ Sbjct: 10 TFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIPTVFEQ 69 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ ++ G P V+ A+ KLA R ++ ITGSVGKT+TK Sbjct: 70 GAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM++ L + G++NN IG+PLT+ + + E+G+S GE+ L+ + Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + VIT I HL + + AK E FE + LN DD ++ + G Sbjct: 186 PDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVN---G 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME------VQLQGKSMEVVHHGIGYHMAQNML 297 IY +GK +D + E + V +G+ + H G H N + Sbjct: 243 KPAIY-YGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGE-FDAHIHIPGEHNVYNAM 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYNANPAS 352 + L L++ K G K A F T+ID+ YNANP S Sbjct: 301 AAAAVGLQL---------GLTIAEIKAGIEKAETIAGRTNFIKTHGMTVIDDCYNANPVS 351 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 MK++I VLS H +GR IAVLGDM E+G + H ++ E + +I ++ +G L Sbjct: 352 MKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAG--EL 405 Query: 413 ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + A + +HY E + + + S + +GD ++VK+S+ F +++ L E Sbjct: 406 AKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464 >gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] Length = 468 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/389 (31%), Positives = 194/389 (49%), Gaps = 45/389 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S D+R+++ F A+KG +D HDF +A+ GA ++V+ + + +P Sbjct: 24 VANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMDNGAAALLVSRHL-----PVELPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D AL L + + IA+TGS GKTT KEM LS + G+ Sbjct: 79 VVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGSCGKTTVKEMAAEILSQKGNVLSTAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ + +F + ELG +H EI + T+LV+P +A++ +A AHL F Sbjct: 139 FNNDIGVPLTLLRLTAEHEFAVIELGANHQQEIAYTTNLVKPQVALVNNLAAAHLEGFGS 198 Query: 203 IEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + +A AK EIFEGL T +N D + + + +KT +S +A Sbjct: 199 LAGVAKAKGEIFEGLTAPLNDSGLSTAIINVDSNDLAMWQPLLAQHAVKT-FSL-TDIDA 256 Query: 257 DFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN------MLMTLG-IVSILTA 308 DF SE ++ ++ ++++ G H N + MT+G + + A Sbjct: 257 DFSATDIFINSEGRACFTMRTSAGTIDITLTLAGIHNVSNALAAAALAMTVGATLEQVKA 316 Query: 309 DVDTAIKA---LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ + + V HP+EG LID++YNA+ AS+KAAI +L+ + Sbjct: 317 GLEQVVNVKGRVDVSHPREG-------------LRLIDDTYNASVASVKAAIDLLASFT- 362 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 G+R VLGDM E+GE S S H ++AE Sbjct: 363 ---GQRWFVLGDMAELGEESASLHREVAE 388 >gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes J0161] Length = 457 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 26 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 204 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 258 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 259 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 311 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + +L DM E+G+ Sbjct: 312 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-ILADMLELGD 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 371 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 431 IKGNEWILVKGSYGMGLKDVVENLI 455 >gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter sp. PRwf-1] gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 505 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 134/435 (30%), Positives = 205/435 (47%), Gaps = 45/435 (10%) Query: 4 LWTFHDLLQA---IQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 +WT LL A + G IG+ I D+R I + F AI G ++DGH F Sbjct: 12 IWTPEQLLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSF 71 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115 + AV+KGA +V+ + +++P VDD A ++A R + +IA+TG Sbjct: 72 VASAVEKGAIATIVSQ----PLSEVNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTG 127 Query: 116 SVGKTTTKEMLTIALSSIKKTYACI--------GSYNNHIGVPLTLARMPVDVDFGIFEL 167 S GKTT KEML + ++ A + G+ NN GVP+ L + + + EL Sbjct: 128 SSGKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLEL 187 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G +H+GEI + +V+P +A I I AHL F G + IA KAEI++ L + T + Sbjct: 188 GANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQPLTQASTAVVPC 247 Query: 228 DDSFFELL--KAKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQ--L 276 DD + + L AK H TI FG +K + K + QS ++ + Sbjct: 248 DDDYSDQLMSTAKQH---TDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAI 304 Query: 277 QGKS---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 +GK+ + V+ G H N L + + L+ +GR R R Sbjct: 305 EGKAPAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRL- 363 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G +ID++YNANP SM+AA VL+ EG RI VLGD+ E+G+ + S H L Sbjct: 364 ---GQHHIIDDTYNANPNSMRAAADVLAA----QEGTRILVLGDIGELGDDAVSEHYKLG 416 Query: 394 EVLSLYNISHVWLSG 408 E ++ + ++ +G Sbjct: 417 EAIANKAVDYMLCAG 431 >gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] Length = 417 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 135/390 (34%), Positives = 192/390 (49%), Gaps = 30/390 (7%) Query: 9 DLLQAIQGHSI---GIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ QA+ G + GI G DSR + F AI G DGHDF+ +G Sbjct: 14 EIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDFVSKVGAQG 73 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGK 119 A +V+ + VA G +P VDD + AL +LA R +A T+I ITGSVGK Sbjct: 74 AVAALVDHE-VADAG---VPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGITGSVGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H+GEI LT Sbjct: 130 TTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHVGEIANLT 189 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV P IAV+ + AHL F E IA AK+EI +GL G LN +D + Sbjct: 190 SLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHVAAMSGI- 248 Query: 240 HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV--VHHGI-GYHMAQN 295 A G + + + D + +C E +L+ E V+ GI G H N Sbjct: 249 -APGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICGMHNVMN 307 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-----QGFFTLIDESYNANP 350 L + L +D L+ R +R A++ + FTLID+S+NANP Sbjct: 308 ALAAATVAHRLGMPLDRIAAGLADVK----RISPHRMAVSAIVKPEARFTLIDDSFNANP 363 Query: 351 ASMKAAISVLSQISPHGEGR--RIAVLGDM 378 SMKA + L + + E + RIAVLG M Sbjct: 364 DSMKAGLDGLIRWHANDERQPFRIAVLGAM 393 >gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 457 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 216/443 (48%), Gaps = 33/443 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + + P VDDVL Sbjct: 32 DSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGATATLSERPVAEG------PYVLVDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A LA ++ ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 AAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ + +P ++T + AHL F EIA K + Sbjct: 145 VLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKPKTGIVTLVGEAHLEFFGSRTEIAKGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +G++K G + + D + L + + + FG +AD L + ++ + Sbjct: 205 IADGMKKGGLLLVPADKIVNDFLPDQ------QKVVRFG--PDADICLTRLEERKDSLTF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR 331 E +++++ G Y+ M+ + V++ ++AI+ A + R + ++ Sbjct: 257 EANFLEQAIDLPVTG-KYNATNAMIASY--VALQEGVSESAIRQAFAQLELTRNRTE-WK 312 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A N ++ + YNANP +M+ + S I GR+ AVL DM E+G S+ H Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSAIPASQGGRKAAVLADMKELGADSKLMHGA 370 Query: 392 LAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHY------SETMDGLFLFIQSSL 441 + L+ I+ ++L G + AL ++ P + VHY + + L +++ L Sbjct: 371 MITSLNPEVITDLFLYGEDMEALYVYAREIYPPN-RVHYFVKNADKDQFEDLTKTVKTWL 429 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ +L Sbjct: 430 QSSDQILLKGSNSMKLDKLVEVL 452 >gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] Length = 470 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + +L DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-ILADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] Length = 504 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 149/482 (30%), Positives = 218/482 (45%), Gaps = 46/482 (9%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 PQ V G + DSR I P F A+ G DGHDF A+ GA L++V V L Sbjct: 23 PQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRP-VEQPALL 81 Query: 82 SIPV-----------FGVDD------VLGALNKLA------VAARLRSKATIIAITGSVG 118 + PV F D VL A++KLA +AA ++ +TGS G Sbjct: 82 AAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTDVLAAE--EGMVVVGVTGSAG 139 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L +T A GS+NN IG+P T R D F + E+ +G I+ L Sbjct: 140 KTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFLVSEMSARGVGHIQHL 199 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELL 235 T + P + V+ + AHL F + IA AK E+ E L G LN DD + Sbjct: 200 TTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEALPAAADGGLAVLNADDDKVAAM 259 Query: 236 KAKSHALGIK--TIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ A ++ T + G + AD+ + + S+M G+ + V G Sbjct: 260 DKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPVGEPVRVELSVFGA 319 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L + + D T LS R + G T+I++SYNANP Sbjct: 320 HQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMDVRTRESDG-VTIINDSYNANP 378 Query: 351 ASMKAAISVLSQISPHGEGRRI----AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 SM+A I L+ + +GRR AVLG M E+GE + H +L VL+ I H + Sbjct: 379 ESMRAGIDALAYTA---KGRRDAASWAVLGQMGELGEDASDEHAELGHVLAQRRIDHAVI 435 Query: 407 --SGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +G + AL +A S + E +DG ++ SL DVV++K+S S G + + Sbjct: 436 VGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQDVVLIKASYSDGLWAVAEG 495 Query: 464 LL 465 LL Sbjct: 496 LL 497 >gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] Length = 504 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 149/482 (30%), Positives = 218/482 (45%), Gaps = 46/482 (9%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 PQ V G + DSR I P F A+ G DGHDF A+ GA L++V V L Sbjct: 23 PQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRP-VEQPALL 81 Query: 82 SIPV-----------FGVDD------VLGALNKLA------VAARLRSKATIIAITGSVG 118 + PV F D VL A++KLA +AA ++ +TGS G Sbjct: 82 AAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTDVLAAE--EGMVVVGVTGSAG 139 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L +T A GS+NN IG+P T R D F + E+ +G I+ L Sbjct: 140 KTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFLVSEMSARGVGHIQHL 199 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELL 235 T + P + V+ + AHL F + IA AK E+ E L G LN DD + Sbjct: 200 TTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEALPAAADGGLAVLNADDDKVAAM 259 Query: 236 KAKSHALGIK--TIYSFGKSK-NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ A ++ T + G + AD+ + + S+M G+ + V G Sbjct: 260 DKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPVGEPVRVELSVFGA 319 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L + + D T LS R + G T+I++SYNANP Sbjct: 320 HQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMDVRTRESDG-VTIINDSYNANP 378 Query: 351 ASMKAAISVLSQISPHGEGRRI----AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 SM+A I L+ + +GRR AVLG M E+GE + H +L VL+ I H + Sbjct: 379 ESMRAGIDALAYTA---KGRRDAASWAVLGQMGELGEDASDEHAELGHVLAQRRIDHAVI 435 Query: 407 --SGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +G + AL +A S + E +DG ++ SL DVV++K+S S G + + Sbjct: 436 VGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQDVVLIKASYSDGLWAVAEG 495 Query: 464 LL 465 LL Sbjct: 496 LL 497 >gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] Length = 473 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 210/449 (46%), Gaps = 28/449 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR +AP F A G DGHD+ Q+ +G +P VD Sbjct: 31 VVIDSREVAPGSLFAAFAGERVDGHDY----AQRAVEAGAAAVLAARPVG---VPAIVVD 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV+GAL LA AA R +++A+TGS GKT+TK+++ L T GS+NN IG+ Sbjct: 84 DVVGALGALARAAVERLGTSVVALTGSAGKTSTKDLIAQLLQRHGPTVWTPGSFNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT + + + E+G +G IR+LT L P I ++ + AHL F E IA A Sbjct: 144 PLTALSATAETEHLVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHLGEFGSREAIAQA 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K E+ EGL + G LN DD + +++ A + FG++ AD + K + + Sbjct: 204 KGEMVEGLPEDGCAVLNADDPLVRAMASRTKA----RVLLFGEAPEADVRGEKVRMTPDG 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + E+ +V G H N L + L V +ALS + G Sbjct: 260 RPVFELHTPTGCSDVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALS----EAGTLS 315 Query: 329 RYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+R + + T+++++YNANP S A++ + Q GR AVLG M E+G+ Sbjct: 316 RWRMEVTERGDGVTVVNDAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGD 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 S + H + + N+S + G + A + VH S+ + L + Sbjct: 376 ASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 434 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +S L GDVV+VK+S S G ++ LLE Sbjct: 435 RSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 457 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 209/448 (46%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + Sbjct: 26 LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L++L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ G++ L D +L + + FG A+ + + + Sbjct: 200 AQGKMQMQDGMPD-GSLLLVPCDPIVDLFLPSNLE-----VVRFGDG--AELTVSELTEY 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQ 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453 >gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus SK58] gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus SK58] Length = 504 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 209/455 (45%), Gaps = 32/455 (7%) Query: 33 DSRSIAPQEAFFAIK-GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSR + + + K G DGHDFI A+ GA V+ A G+ + P V+D Sbjct: 33 DSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDGA-AHPAIIVEDA 91 Query: 92 LGALNKLA--VAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + A+ LA + R+R S T+I ITGS GKTTTK++L L++ T A +GSYN + Sbjct: 92 VLAMGALAREIVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEV 151 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R +D + E+G H+G I +L +VRP I V+ + AH +F G+ IA Sbjct: 152 GVPLTVFRAELDTRSLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIA 211 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---------LGI-KTIYSFGKSKNAD 257 K E+ E L G LN DD + A++ A G+ + + + Sbjct: 212 RTKGELVEALGPDGVAVLNLDDERVAGMAARTAAPITWFTADERGVARAAEDVAAGRASG 271 Query: 258 FQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVD 311 + + +Q LQ G V H + G H N+L D Sbjct: 272 LVAARDVRADDQERPLFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPA 331 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L P R + R G T+I+++YNANP SM+AA+ L+ + GRR Sbjct: 332 EIARGLDGLGPAS-RFRMERTDRADG-VTIINDAYNANPESMRAALRTLATLG-RSSGRR 388 Query: 372 I-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH 425 AVLG+M E+G+ H + E + NI+ + + G ++ AL + H Sbjct: 389 TWAVLGEMLELGDARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEG-SWGEEAH 447 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + F+ L GD+V+VKSSN G L Sbjct: 448 FVDDAAQAEAFLTEHLRPGDLVLVKSSNGVGLAAL 482 >gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Weissella cibaria KACC 11862] Length = 454 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 133/453 (29%), Positives = 204/453 (45%), Gaps = 36/453 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR F + + DGHD++ AV GA + + D +P Sbjct: 24 VTSTTFDSRKAEAGSLFVPLVAAN-DGHDYVASAVANGATVTLWQADHPNV--PTDVPTL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A +LAV + + ++AI+GS GKTTTK+ + +S KT ++NN Sbjct: 81 VVADTLVAFQQLAVYYLKQVQPKVVAISGSNGKTTTKDFVAAIGASTFKTVKTPANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T+ MP D + + E GM G++ FL+ +V P IAV+T I AH+ F E I Sbjct: 141 IGVPTTILSMPADTELLVIEFGMDRPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K EI GL+ G + N D+ LL+ ++ +FG + + D Sbjct: 201 ADGKMEIIAGLQPNGVLVYNGDEP---LLRERAGQHAFLHTATFGLNPDNDLY------- 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALSV 319 S + + G + + + YH+ N L + + +L D +AL+ Sbjct: 251 --ASTIAMNPVGATFQTDKSAMTYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALA- 307 Query: 320 FHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 E R G F ++ + YN+NP + K + ++ GRRIAVLGD Sbjct: 308 ----EAPITENRTEWLAGNFGGKILSDVYNSNPTAAKEVLHFFAETPV--TGRRIAVLGD 361 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDG- 432 M E+GE + H LAE L I HV+L G + +L+D L P YS+ Sbjct: 362 MLELGEAGPALHASLAEKLDPATIQHVYLVGDIMASLEDVLSVNYPAGTVKRYSKDDKAT 421 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L +Q+ L D V++K S+ ++ L+ Sbjct: 422 LIADLQADLTADDAVLLKGSHGIHLEEVVTALV 454 >gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 468 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 135/483 (27%), Positives = 226/483 (46%), Gaps = 41/483 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + +++A G + P + GIS D+R+I + F A++G +DGH FI A Sbjct: 1 MEPI-SLSKIIEATGGTLLSGTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +V+ + + S +I + V D L L +A R +IA+TGS GKT Sbjct: 60 FKKGAIGAIVSRE----VESKNI-IIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ KT GSYNN +GVPLTL M + E+ + LG I+ L Sbjct: 115 TTKEMLGYILTREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGGIKRLCE 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P + V+T I HL E + K+E+ E L + G LN DD + +K S Sbjct: 175 IAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLKMKEISR 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K I +FG ++F + +++E L + V + I Y N L + Sbjct: 235 T---KRIVTFGVENKSEFSASNIRVG--DTFLEFTLNN-NYRVKLNTISYCNVYNGLAAI 288 Query: 301 GIVSILTA-DVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASM 353 + ++ ++ I L F R + R N+ +I++ YNANP SM Sbjct: 289 AVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQSM 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---------LSLYNISHV 404 + A+ + +++ + +IA+LG+M E+GE + FH + ++ +++ +++ Sbjct: 349 QEALVAVGKMNSY--TNKIAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGDLAQY 406 Query: 405 WLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G A + +PR + V+ E D L ++ GD+V++K S ++ Sbjct: 407 MAHG----AEDEGMPRENIFVSVNNVEASDRLLRILRP----GDIVLIKGSRGMKMEEIV 458 Query: 462 NLL 464 L Sbjct: 459 ERL 461 >gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] Length = 456 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 141/476 (29%), Positives = 221/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + + I P + DSR IA + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEIA------NHPYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEIIDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ + H + R + ++ A N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIRQ-AFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGINDQILLKGSNSMNLAKLVESLENE 455 >gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] Length = 452 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 215/465 (46%), Gaps = 25/465 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +L+A +G S F++ +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 62 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A G +V V I + VD+ L A LA R R ++AITGS GKTTTK Sbjct: 63 ATGAIVEKGRSVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + Sbjct: 118 EMVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT + +H+ E IA AK E+ L + LN DD + +KA Sbjct: 178 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY---VKAMDRLAK 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 235 GKTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 294 RVLGIKSNTIRKGLSEFS---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419 R+IA+LGDM E+G+ S+ H ++ +L+ S V+ G F K A Sbjct: 350 EGK---RKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + M + I+ GDV++VK S R++ L Sbjct: 407 TTFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448 >gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] Length = 457 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 132/475 (27%), Positives = 215/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + + + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVEG------YPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVEDYLPTD------ 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV- 303 K + FG+ AD ++ + + + G+++++ G + A N ++ + Sbjct: 231 KKVVRFGQG--ADLEVTDLIERKDSLTFKANFLGQALDL--PVTGKYNATNAMIAAYVAL 286 Query: 304 --SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 287 QEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AILANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] Length = 457 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 132/431 (30%), Positives = 210/431 (48%), Gaps = 35/431 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R FFA+KG +D H ++ AV +GA +VV + S+ +P V Sbjct: 28 INTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQLVVK 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GSYNN 145 D AL +LA R + +A+TGS GKTT KEM L + G++NN Sbjct: 84 DTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGNFNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F + Sbjct: 144 DIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLVG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKW 263 + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ ++ Sbjct: 204 VVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSVKNV 255 Query: 264 KQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318 Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ S Sbjct: 256 -QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRS 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + +G+ + + L+D++YNAN S+ AAI VL + I + DM Sbjct: 314 -----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCVADM 363 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+GE S + H ++ + ++L N+ V G + +A+ +E +D L I+ Sbjct: 364 KELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVPLIE 423 Query: 439 SSLVDGDVVVV 449 + L VVV Sbjct: 424 NQLQQNKKVVV 434 >gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 459 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 178/365 (48%), Gaps = 17/365 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GISIDSR+I + I G +DG FI GA +++ + S+SIP Sbjct: 27 IKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSGAVAFLIDENYKIP-KSISIPFV 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LA A R IIAITGS GKTT+K ++ LS K G+ NN Sbjct: 86 KVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKNLIHSVLSEKYKVEKTQGNLNNE 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL G+ E+G GEI LT++ +P +A+IT I AHL E I Sbjct: 146 IGVPLTLLDFSDKTQIGVVEMGTEDFGEISLLTNIAKPDMAMITNIGDAHLLKLKSREGI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWK 264 A AK EI EGL+ GT N DD E+LK S+ + KTI S+GK +F++ + Sbjct: 206 AKAKLEILEGLKADGTFIYNGDD---EILKKVLPSYTIKQKTI-SYGKEDGVNFKV--YP 259 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ + + + +V +G H N + + I + + L+ Sbjct: 260 KEFSSTYTKFSYENEDYKVPL--LGTHQVYNGALAVLIGKLFNLSYEEIDNGLAKVSNNA 317 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + F ++D++Y +NP S+K + + + G +I VLGDM E+G+ Sbjct: 318 NRNE----LIERNGFDILDDAYKSNPQSLKQGLELAGFLD--GYLNKIVVLGDMLELGDG 371 Query: 385 SQSFH 389 ++ H Sbjct: 372 EKNLH 376 >gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] Length = 451 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 129/441 (29%), Positives = 222/441 (50%), Gaps = 29/441 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ E F A++G +DG +FI +++ + N + + V Sbjct: 29 VNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ--KYNARYAVVESGK 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 L L+KL + + T +AITGS GKTTTK+++ L + A + G+YNN Sbjct: 87 KFLIELSKLILK---KLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKGNYNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PL++ + F +FE+G +H GEI L ++RP+I++IT I AH+ NF E+I Sbjct: 144 IGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKEKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K +IF L+ LN DD +F++L + + G S + N D + +K C Sbjct: 204 AEEKKQIFNFLKTNELKILNKDDEYFQIL---NQSPGKTFCIS---NNNDDSDVLSFKSC 257 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + +E+ + +S+++ G H QN + + + D K GR Sbjct: 258 -ELNMIELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLESTNGR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 K+Y N LID+SYN+NP+S+ +AI L+Q E +I ++GDM E+G+L+ Sbjct: 317 FKKYIFKDN---IELIDDSYNSNPSSLISAIDHLNQ----SEKNKILIIGDMGELGQLTD 369 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVD 443 +H+ + E + I+ V G A K A+ + ++ +++S T + L ++ Sbjct: 370 QYHLQIIEEILKTKINIVLTMG---KAFKAAIKKNNENLILNFS-TYEDLLDKALPAIKK 425 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 +++VK+S GF +++ L Sbjct: 426 DTIILVKASRFMGFENIVSQL 446 >gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 216/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + I + DSR IA + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VA++ I P VDDVL A LA ++ + A+TGS GKTT Sbjct: 63 A---------VATLSEKEIANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+ML LS+ KTY G+YNN IG+P T+ MP + + + E+G HLG+I L+ L Sbjct: 114 TKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSEL 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P A++T + AHL+ F EIA K +I +G+ G++ L D E ++ Sbjct: 174 AHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGM-APGSLLLAPADPIVE-----AYL 227 Query: 242 LGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 228 PADKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-M 279 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V++ + I+ F E R ++ + YNANP +MK + Sbjct: 280 IASYVALQEGVSEEQIR--QAFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 440 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 199/429 (46%), Gaps = 27/429 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR I + F +KG Y GHDFI A GA ++ + V L Sbjct: 26 VNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A LA ++K +IA+TGS GKTTTK+M+ LS KTY G++NN Sbjct: 79 -VDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM H G+I FL+ L +P +A+IT I AHL E I Sbjct: 138 IGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K I GL G + D + + I FG D + K + Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPEN------QKISRFGLP-GEDLFITKLIEH 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILT-ADVDTAIKALSVFHPKE 324 E+ E +S+ + G Y+ ML +G+ LT A+++ A+K + + + Sbjct: 249 KERLTFETNFLDESITIPVPG-KYNATNAMLAAYVGLHYGLTEAEINKALKEVELTRNRT 307 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 K A L+ + YNANP +M+ + I + GR+IAVL DM E+G Sbjct: 308 EWKKSKNGA------DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPT 361 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H ++ + + I V+L G + L D + V Y +D L + + L Sbjct: 362 AAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKPVSYFTDLDLLTESLSADLKPA 420 Query: 445 DVVVVKSSN 453 D V+ K SN Sbjct: 421 DQVLFKGSN 429 >gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 455 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 132/444 (29%), Positives = 207/444 (46%), Gaps = 19/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I+ F IKG DGHDF+ A++ GA + I V Sbjct: 24 ITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGHPNK--PEGIAVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ LA + T++ ITGS GKTTTK+M+ L+ Y ++NN Sbjct: 81 EVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + E+GM G++ L+ L RP +AVIT I AH+ ++I Sbjct: 141 IGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFLGSRDKI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI + L++ G N D E L A+ A + +FG + + + Sbjct: 201 ADAKMEITDFLQEDGEFIYNGD----EPLLAERAAKLSQDKSTFGFADSDSIHASDLRST 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 S+ ++ G E IG H N + + +V + D I A L+ F P Sbjct: 257 MHHSFFKI--NGTDREFSIPMIGRHNVANAMAAI-LVGRHFGESDEEIAAGLANFVPTAN 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + + + I YN+NP ++KA + Q+ GRRIAVL DM E+G S Sbjct: 314 RMEWEKGDCGEDIMSDI---YNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSS 440 H LA L I+ ++L G + L AL +++H + + M L ++S Sbjct: 371 ADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEMSHLIDDLKSD 430 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 + D+V++K S+ R+++ L Sbjct: 431 IHSQDIVLLKGSHGMHLERVLDRL 454 >gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 465 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 184/387 (47%), Gaps = 13/387 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ AI G+ + P V G+S DSR I P AF A+KG +DGHDFI A+ GA Sbjct: 5 TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAALSGGA 64 Query: 66 GLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 + + + L + VDD L AL KLA R + K +I +TGS GKTTT Sbjct: 65 AAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGSSGKTTT 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K ++ LS + K G++NN IG+P+TL R+ + E+ M GEI L + Sbjct: 125 KNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGKGEIASLAAIA 184 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT I HL I IA+AK E+ L G LN D+ + L A Sbjct: 185 RPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWCRRLAATCPC- 243 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++ + + + + E ++ GK + V G H ++ L L + Sbjct: 244 --RVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRHNVEDALAALAV 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + +T ++L+ + P E + R G + +++YNANP SM+AA+ L Sbjct: 302 GFSLGVEPETMARSLADW-PAEDLRQDLRP--GPGGSLVFNDAYNANPESMEAALQALGA 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH 389 + GRR+AVLG M E+G H Sbjct: 359 LP----GRRVAVLGAMLELGPAEVELH 381 >gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] Length = 477 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 136/439 (30%), Positives = 205/439 (46%), Gaps = 33/439 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + IDSR + F A+ G DGH F+ GA VV+++ + GS Sbjct: 32 VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + A +LA A R R +I I GS GKTTTKEM+ LS+ K G+YNN Sbjct: 92 LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGNYNN 151 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL ++ D + + E+G++H GE+ FL + RP ++T I HL F ++ Sbjct: 152 HLGVPLTLFQLRRDTEMAVIEMGINHPGEMAFLASIARPTHGLLTNIGHEHLEFFGSLDG 211 Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYS---------FGKSKN 255 +A A+AE+F+ LE + GT F+N DD L A +L K Y + + Sbjct: 212 VAKAEAELFDYLEVSGGTAFVNLDD---HRLAAAGASLSRKICYGAVPGEPCAWWAEEVG 268 Query: 256 ADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 +D R + CSE G V + IG H N + + + + Sbjct: 269 SDRVGRIAFTLCSE--------AGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQIA 320 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L P G KR L G +++++YNANP S++ A+ L+ + GR++AV Sbjct: 321 SGLGELMPASGW-KRMEL-LEAGGVVVLNDTYNANPDSVRLALDTLASLDC--SGRKLAV 376 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSETMDGL 433 +GDM E+G + H + + I V + ++A R + H+ ETMD L Sbjct: 377 IGDMLELGGNAALEHESIGNYIRQLPIDGCVTIGPLAGSCCQNAQERCLG-HF-ETMDDL 434 Query: 434 FLFIQSSLVDGDVVVVKSS 452 F+ + GD V+ K S Sbjct: 435 DAFLGDYVRPGDAVLFKGS 453 >gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 453 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 129/467 (27%), Positives = 229/467 (49%), Gaps = 34/467 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ GA Sbjct: 4 TLNEVLKAIDGELLIKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63 Query: 66 GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 + +++ ++ + L+ V V+D AL LA R + ++ ITGS GKT+TK Sbjct: 64 TVAIID-EVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI L ++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNEIHRLANIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + +K T+ +NY++ + + +S+ Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDMLQKVN-ESNEFK 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I+ I G K D + E S+ V G+ + +G H N L+ + I Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SMK+A+SVL Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--------VLSLYNISHVWLSGFHVLAL 414 S R+IAVLGDM E+GE ++S H + + VL+ + SGF Sbjct: 355 YSG---SRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTTGEFREDYKSGFG---- 407 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 KD + + + L ++ + + DGDV++VK+S S F ++ Sbjct: 408 KDTVTFNCK-------EELKNYLCNLIKDGDVILVKASRSAKFEDIV 447 >gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] Length = 425 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 117/380 (30%), Positives = 185/380 (48%), Gaps = 22/380 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I FFA+KG +++G+ + A++KGA VV+ A ++ VD Sbjct: 16 VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYA----INNKFILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +L R + KA +I +TGS GKTTTKE++ + KT A +G+ NNHIGV Sbjct: 72 DVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D + I E+G +HL EI FL+ L P IT AHL F E + Sbjct: 132 PLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGSTEGVIQG 191 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ L +FLN DD E LG S N+++ K + S Sbjct: 192 KSELYKYLTTNQKHVFLNADDPIQE------SKLGTYVKKIGFSSNNSNY--FKIELLSA 243 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 ++ +++ K + + +G + N + + + +A+ + P R + Sbjct: 244 DPFVTIKV--KDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPANNRSQ 301 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 L Q + +I ++YNANP SM AA+ + I +I LGDM E+G +++ Sbjct: 302 ----ILEQNGYKIILDAYNANPTSMAAALDNFNGIKA---AHKIVFLGDMFELGTTAETE 354 Query: 389 HIDLAEVLSLYNISHVWLSG 408 H +A+ N + +L G Sbjct: 355 HQHIADKACKMNFTTTFLVG 374 >gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] Length = 466 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 215/465 (46%), Gaps = 25/465 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +L+A +G S F++ +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 18 FTLSQVLEATKGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 76 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A G +V V I + VD+ L A LA R R ++AITGS GKTTTK Sbjct: 77 ATGAIVEKGRSVEGIACIE-----VDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTK 131 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + Sbjct: 132 EMVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAE 191 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT + +H+ E IA AK E+ L + LN DD + +KA Sbjct: 192 PTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY---VKAMDRLAK 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 249 GKTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAG 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 308 RVLGIKSNTIRKGLSEFS---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQL 363 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP 419 R+IA+LGDM E+G+ S+ H ++ +L+ S V+ G F K A Sbjct: 364 EGK---RKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGL 420 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + M + I+ GDV++VK S R++ L Sbjct: 421 TTFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 462 >gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] Length = 456 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 205/448 (45%), Gaps = 43/448 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89 DSR I P + F +KG DGHDFI A + GA VA+ + P V+ Sbjct: 32 DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A LA A ++K + A+TGS GKTTTK+ML LS+ TY G+YNN IG+ Sbjct: 82 DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + E+G HLG+I L+ L P A++T I AHL F EIA Sbjct: 142 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266 K +I +G+ + G + + D L K + + FG + + RK Sbjct: 202 KLQIADGMPEGGLLVVPADPIVNAYLPEK------QKVVRFGPDEEIFITELIERKDSLT 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325 +++E + + V G + A N M V++ + AI+ + Sbjct: 256 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALQEGVSEAAIRDSFETLQLTRN 307 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +M+ + S I + GR++AVL DM E+GE S Sbjct: 308 R-TEWKKAGNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 364 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + LS + V G + L + HV+Y + + + Sbjct: 365 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 424 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ SL + D +++K SNS +L+ L Sbjct: 425 VKESLKEQDQILIKGSNSMNLAKLVEEL 452 >gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] Length = 457 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 206/448 (45%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + Sbjct: 26 INQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDNGALATFTEKELPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A KLA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ G++ L D + + + FG A+ + + + Sbjct: 200 AQGKMQMQDGMPD-GSLLLVPSDPIVDPFLPSN-----LDVVRFGDG--AELTVSELTEF 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILTALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKIADEDQFDAMVKH 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEHDQILLKGSNSMNLAKVVEEL 453 >gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 24 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+G Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGELG 368 Query: 383 E 383 E Sbjct: 369 E 369 >gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] Length = 476 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 139/439 (31%), Positives = 202/439 (46%), Gaps = 31/439 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + IDSR F A+ G DGH F+ GA VV+ + G+ Sbjct: 34 VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + A +LA A R R +I I GS GKTTTKEML LS+ G+YNN Sbjct: 94 LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGNYNN 153 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL +M D + + E+G++H GE+ FL+ L +P ++T I HL F ++ Sbjct: 154 HLGVPLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDG 213 Query: 206 IASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW- 263 +A A+A +F LE GT F+N DD L A +L KT Y G A R W Sbjct: 214 VADAEAALFRYLEAHGGTAFVNLDD---HRLAAAGASLSRKTGY--GAQPGAG---RAWW 265 Query: 264 -KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 +Q V S VH + A + +++ + A A L+ H Sbjct: 266 AEQIGADRVGRVSFTLCSESGVHQPV----AMQFVGRHNVINAVAASAVGAHFGLAPAHI 321 Query: 323 KEG-------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 EG +G + G +++++YNANP S++ A+ L+ I GRRIAVL Sbjct: 322 AEGLGTLLPAKGWKRMELFEDGGIVVLNDTYNANPDSVRLALDTLAAIECR--GRRIAVL 379 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 GDM E+G+ S H + + + + + L L + A R + H+ TMD L Sbjct: 380 GDMLELGDNSAIEHESIGRYIRQLPLDACLTLGDAAQLICEQAGGRCLR-HFG-TMDELR 437 Query: 435 LFIQSSLVDGDVVVVKSSN 453 F+ + GD ++ K S Sbjct: 438 GFLSEYVQPGDALLFKGSR 456 >gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes L99] Length = 470 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL +G + ++++ + G +FGKS+ A+ + + Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAE 271 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323 +E + + +E+ IG H N + + + I + +A+K + Sbjct: 272 AEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + +++++YN++P ++K + + G+ + + VL DM E+G+ Sbjct: 325 ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGD 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + + Sbjct: 384 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLAE 443 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 444 IKGNEWILVKGSYGMGLKDVVENLI 468 >gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] Length = 454 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 25/449 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+RSI F A+ G +D H+F AV+ GAG ++V + ++ + + Sbjct: 24 IESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQKRVNVNVPQVVVG-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL ++A + +AITGS GKTT KEM+ L K G++NN Sbjct: 82 ---DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R D D+ + ELG +H+GEI + T LV+P IA++ +A AHL F I+ + Sbjct: 139 IGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRK--- 262 AK EI++GL G +N D + AK L K + +F +S NAD Sbjct: 199 KQAKGEIYQGLAAGGIAIVNLDSNG----GAKWDEVLADKNVITFSQS-NADAYFYASNI 253 Query: 263 -WKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 E S+ + + + +E+ IG H N + I + A ++ L Sbjct: 254 VMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAASIIALKMGATLEEIRSGLKHL 313 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + +GR + + LID+SYNA+ +MKAA+ +L+ +G+R +LG+M E Sbjct: 314 NKVKGRVEVEELSDK---IKLIDDSYNASVPAMKAAVDLLAAF----QGQRWLILGNMAE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439 +GE S + H + E + HV G + + L IH + E +D + + Sbjct: 367 LGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISE-LCDGIHFETHQEMIDYIKQHLDQ 425 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ + ++VK +N + + L E + Sbjct: 426 AVPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP 32953] gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis YPIII] gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis PB1/+] Length = 458 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 39/388 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + F A+KG +DGHDF A+ GAG ++V+ ++ +G P V Sbjct: 32 VTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL--VGG---PQLVVK 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A R + A I+A+TGS GKT+ KEM L G++NN IGV Sbjct: 87 DTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAGNFNNDIGV 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 147 PLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 206 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLRKWK 264 K EIF GL GT +N D + + + H K ++ F +++ DF +R Sbjct: 207 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHAAEHIDFYASDVRITP 263 Query: 265 QCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 Q + + +E+ L G+ H+ A + M++G AD+ + Sbjct: 264 QLTSFTLHSPFGTVAIELPLPGQ-----HNIANALAAAALAMSVG------ADLAAVRQG 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ GR + L +G L+D+SYNAN SM AA VL+++ G R+ V+G Sbjct: 313 LAQLQAVPGR--LFPVPLAEGKL-LLDDSYNANVGSMIAAAQVLAEMP----GYRVMVVG 365 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV 404 DM E+GE + H + E L + V Sbjct: 366 DMAELGETAADCHRQVGEAAKLAGVDKV 393 >gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM 10] gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis FV-1] gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis CO92] gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10] gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CO92] gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D106004] gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D182038] gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 458 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 39/388 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + F A+KG +DGHDF A+ GAG ++V+ ++ +G P V Sbjct: 32 VTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLL--VGG---PQLVVK 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A R + A I+A+TGS GKT+ KEM L G++NN IGV Sbjct: 87 DTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAGNFNNDIGV 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 147 PLTLLRLTAEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 206 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF---QLRKWK 264 K EIF GL GT +N D + + + H K ++ F +++ DF +R Sbjct: 207 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFSPHAAEHIDFYASDVRITP 263 Query: 265 QCSEQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 Q + + +E+ L G+ H+ A + M++G AD+ + Sbjct: 264 QLTSFTLHSPFGTVAIELPLPGQ-----HNIANALAAAALAMSVG------ADLAAVRQG 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ GR + L +G L+D+SYNAN SM AA VL+++ G R+ V+G Sbjct: 313 LAQLQAVPGR--LFPVPLAEGQL-LLDDSYNANVGSMIAAAQVLAEMP----GYRVMVVG 365 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHV 404 DM E+GE + H + E L + V Sbjct: 366 DMAELGETAADCHRQVGEAAKLAGVDKV 393 >gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 486 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP G I DSR+I+ + F +KG DGH+FI A GA +A+I Sbjct: 55 VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 101 Query: 82 SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I P V D L A LA + +IA+TGS GKTTTK+M+ LS+ KTY Sbjct: 102 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 161 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P IAV+T I AHL Sbjct: 162 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 221 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E+IA K +I +G+ G + D L A + FG + + Sbjct: 222 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 273 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q+ + K+ E+ + + ++ G + A N ++ + +L + + AL Sbjct: 274 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 331 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + + A ++ + YNANP +M+ + S I + G++IA+L DM Sbjct: 332 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 388 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429 E+GE S H + + +I + G + L + + + Sbjct: 389 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 448 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D L ++ +L + D +++K SNS +++++L Sbjct: 449 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 483 >gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 454 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/398 (30%), Positives = 190/398 (47%), Gaps = 40/398 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 +N I DSR+I + F ++G DGHDFI A + GA VA+ +I Sbjct: 19 LNQIEFDSRNITKGDLFLPLQG-ERDGHDFIDLAFENGA---------VATFSERAISGR 68 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V++ L A KLA + + +IA+TGS GKT+TK+M+ L+ KTY G+Y Sbjct: 69 PYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGNY 128 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP D + + E+G H+G+I+ L+ + RPHIAV+T I AHL+ F Sbjct: 129 NNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARPHIAVLTLIGEAHLAYFGSR 188 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQL 260 E+IA K +I +G++ G I + D + S + + FG + D + Sbjct: 189 EKIAEGKMQIVDGMDSNG-ILIAPGDPILDPYLPDS-----QMVIRFGDHQELVVEDIKE 242 Query: 261 RK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 RK +K + + L GK + A N ++ + +L + I+A Sbjct: 243 RKDSLTFKTNVLPRPVTIPLTGK-----------YNATNAMIAAYVGRLLAVPDEDIIEA 291 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L R + + A L+ + YNANP +M+ + + I + G++IAVL Sbjct: 292 LEAVKLTRHRTEWIKAA---NGADLLADVYNANPTAMRLILETFAAIPANLNGKKIAVLA 348 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 DM E+G S + H L L I + G + AL Sbjct: 349 DMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQAL 386 >gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] Length = 466 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/423 (30%), Positives = 195/423 (46%), Gaps = 30/423 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D HDF+ G + +V + I L Sbjct: 32 IPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E I AK+EI+ + G + D F + + A I T G D +L Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILDAAKAHRISTFGVGGDVYATDIEL 266 Query: 261 ----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + Q V+L G H QN + + ++ ++ Sbjct: 267 LPQSTNFTLHTPQGISAVKLPFA---------GEHNVQNATAAVAFALAIGIGLEDIVQG 317 Query: 317 LSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L ++ +G + R + + + ID++YNANP SM+AA VL Q +G ++ V+ Sbjct: 318 L-----EQAQGAKGRLNFIQKSPYLFIDDTYNANPTSMRAAAQVLLQ----QQGLKVMVM 368 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLF 434 GD+ E+G+ S H DL L+ + H+ G F AL+ A S V +T Sbjct: 369 GDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAEAL 428 Query: 435 LFI 437 F+ Sbjct: 429 PFL 431 >gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] Length = 473 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 218/471 (46%), Gaps = 57/471 (12%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + DSR++ F A G DGHD+ AV GA V+ L Sbjct: 23 PELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVGAGAVAVLATR-------PL 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P VDDV AL LA R T+IA+TGS GKT+TK+++ LS T G Sbjct: 76 GVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTGKTSTKDLIAQLLSRRGPTVWPPG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PLT R+ D + E+G +G IR+LT L P I ++ + AH+ F Sbjct: 136 NLNNEIGLPLTALRVTRDTRHLVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFG 195 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---- 257 G E+IA AK E+ E L ++G LN DD + ++ A + FG++ +A+ Sbjct: 196 GKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPRTRA----RVLLFGEADDAEVRAE 251 Query: 258 -----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 F LR C E + ++L G+ HH A + LG+ + Sbjct: 252 NVTLTDTGRPRFLLRTPTGCGE---VTLRLYGE-----HHVSNALAAAAVAHELGMPAEE 303 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364 A ++LS R+R + + T+++++YNA+P S++AA+ L + Sbjct: 304 IALGLNEARSLS----------RWRMEVTERPDGVTIVNDAYNASPDSVRAALRALVAMG 353 Query: 365 PHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALK 415 GR AVLG M E+G+ S + H + + N+S + G + A Sbjct: 354 SAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWLRMGAYN 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + VH S+T + L ++ L GDVV+VK+S + G ++ LLE Sbjct: 414 EGSWGEESVHVSDTQAAIDL-LRGELRPGDVVLVKASRAAGLEKVAQALLE 463 >gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 440 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 205/440 (46%), Gaps = 27/440 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR I + F +KG DGHDFI A GA ++ + V L Sbjct: 26 VNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA-IISFSEKEVEQAHLL----- 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A KLA ++K +IA+TGS GKTTTK+M+ LS KTY G++NN Sbjct: 79 -VDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM H G+I FL+ L +P +AVIT I AHL + E I Sbjct: 138 IGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAVITLIGEAHLEHMGSRENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K I GL G + D + + I FG D + K + Sbjct: 198 AKGKMGITAGLH--GELIAPADPIINAFIPDN------QKIIRFGLP-GEDLFITKLVEH 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGI-VSILTADVDTAIKALSVFHPKE 324 E+ E +S+ + G Y+ ML +G+ + A++ A+K + + + Sbjct: 249 KEKLTFETNFLDESITIPVPG-KYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNR- 306 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 ++ A N L+ + YNANP +M+ + I + GR+IAVL DM E+G Sbjct: 307 ---TEWKKAKNGA--DLLSDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPS 361 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H ++ + + I V+L G + L + + V Y +D L + + L Sbjct: 362 AAQLHKEILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKAVSYFTDLDLLTESLSADLKPT 420 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D V+ K SNS ++ L Sbjct: 421 DQVLFKGSNSMKLSEVVEKL 440 >gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316] gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316] gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] Length = 455 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP G I DSR+I+ + F +KG DGH+FI A GA +A+I Sbjct: 24 VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70 Query: 82 SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I P V D L A LA + +IA+TGS GKTTTK+M+ LS+ KTY Sbjct: 71 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+P T+ MP D + I E+G HLG+I L+ + +P IAV+T I AHL Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E+IA K +I +G+ G + D L A + FG + + Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q+ + K+ E+ + + ++ G + A N ++ + +L + + AL Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + + A ++ + YNANP +M+ + S I + G++IA+L DM Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429 E+GE S H + + +I + G + L + + + Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 417 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D L ++ +L + D +++K SNS +++++L Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452 >gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] Length = 457 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 222/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++T + AHL+ F EIA K +I +G+ +G++FL D E + Sbjct: 177 KTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLFLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A+N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAVNGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] Length = 461 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 209/446 (46%), Gaps = 23/446 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGSLSIPVFG 87 +SIDSR I P + F + G H DGH FI A +KGA + ++ G + V Sbjct: 27 VSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEKGAAGCFAAFSKNVTHPEG---MTVIS 83 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D AL L+ R + + ++A+TGSVGKTTTK+M+ ALS KT G+ NNH+ Sbjct: 84 VEDPEQALQDLSAFYRRKFQLPVVAVTGSVGKTTTKDMIAAALSPELKTLKTEGNLNNHL 143 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL L R+ + + E+GMS GEI L L P +AVIT I +HL E IA Sbjct: 144 GVPLMLTRLDSTYEAAVLEMGMSGYGEIDLLAKLALPTVAVITNIGESHLEMLGSREGIA 203 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E+ L G +N D+ LL LG + I +FG ++A + Sbjct: 204 RAKCELLGHLAADGVAVVNADEP---LLVPHIKGLGCRVI-TFGFDEHATVRCTDIINDE 259 Query: 268 EQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ +G +EVV G H N++ L + +L D + S Sbjct: 260 AGKRAIIEQEGFAPLEVVPPLPGRHNIYNLMAALAVGRLLGVDDSVLTEGFSRVRLS--- 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R +I+++YNA+P ++ AA VL++++ + R AVLGDM E+G+ + Sbjct: 317 GMRLETVTTPAGIQVINDAYNASPTAVSAAFDVLAELAK--DAARFAVLGDMLELGDWEE 374 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSS 440 H ++ +N+S + + G + D P+ V+ E+ I Sbjct: 375 EGHRQTGRQVARHNLSGLLVLGERAQLIADGAVAAGYPPQ--RVYRCESHAQAAQVIAKI 432 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLE 466 GD V++K S ++ +LLE Sbjct: 433 ARAGDWVLLKGSRGMRMEDVLAVLLE 458 >gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 463 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 35 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 91 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+G Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGELG 379 Query: 383 E 383 E Sbjct: 380 E 380 >gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] Length = 467 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 132/413 (31%), Positives = 198/413 (47%), Gaps = 35/413 (8%) Query: 5 WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W+ L QA QG+ + P G + I DSR +AF A+KG +D HDFI + Sbjct: 14 WSIEQLQQATQGYWLNDKKPAGQIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V+ + A I L V+D AL +L R ++ + +IA+TGS GKTTT Sbjct: 74 GCEIAIVSRPVDADICQLV-----VEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + +V Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPVMLLELRPEHQYAVMELGASHQGEIDYTSKMV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A I I AHL F G + I AK+EI+ + +T I D F E+++A A+ Sbjct: 189 QPHVAGIINIGTAHLGEFGGRDGICRAKSEIYAHISETSII--PAADDFAEVIRA---AV 243 Query: 243 GIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + SFG +D L ++ S + S V G H +N Sbjct: 244 RTEKSLSFGAGGEVYASDVVLE-----AQSSSFTLNTPQGSKTVQLPFAGEHNVENATAA 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAA 356 + +D + L +GR LN + ID++YNANP SM+AA Sbjct: 299 AAFALAIGIGLDDIVAGLEQAVGAKGR-------LNFIPHKDYLFIDDTYNANPGSMRAA 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSG 408 VL+Q +G R+ V GD+ E+G + H L +++S+ I+ V G Sbjct: 352 AEVLAQ----QQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVG 400 >gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 466 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 54/439 (12%) Query: 52 DGHDFILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 DGH+FI A+ KGA +V ++ S +IPV + L AL KLA R R Sbjct: 54 DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPV---KNTLTALGKLASFHRSR 110 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFG 163 +IA+TGS GKTTTKE+L L +++++ + +YNN IG+P TL ++ Sbjct: 111 FDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLPFTLFKISDQTRVV 170 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + ELGM+H GEI L+ + +P A+ITTI AH+ + IA AK EI EGL+K G + Sbjct: 171 VCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAKGEIVEGLKKGGKL 230 Query: 224 FLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 F + ++LK K+ G K I+S + K++ F L Sbjct: 231 FYPNTGEYSKILKNKTRKHGNKLVLTKSEKIFSILQKKSSGF----------------LL 274 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + K+ ++ + G + +N+ + + + + + + + F + R L Sbjct: 275 EYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSF-----KSSNKRLDLQN 329 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEV 395 G +++I+++YNAN SM +++ V Q++ +G+ AVLGDM E+GE S+ FH L + Sbjct: 330 GKYSVINDTYNANYESMISSLEVADQLA---DGKEFYAVLGDMKELGEYSKEFHKKLGKK 386 Query: 396 LSLY-NISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQS---SLVDGD 445 S + N+ ++ G +++ PR H+ T +GL I ++ +G Sbjct: 387 CSEFQNLKGLYTFGTDAFWIQEEFVKRTSSPR-FSEHFPGTQEGLSELIHKFLQTIPEGS 445 Query: 446 VVVVKSSNSCGFYRLINLL 464 +V+ K+S R + L Sbjct: 446 IVLAKASRGIQLERFVEAL 464 >gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC BAA-286] Length = 428 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 220/439 (50%), Gaps = 30/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+ FFA+KG +++G+++ A+ G +V+ A+ ++ + V+ Sbjct: 16 VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPNIIL----VE 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L KLA R + K +I ITG+ GKTTTKE++T LS A G+ NNHIGV Sbjct: 72 DCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + I E+G SH+GEI+ L+ + P+ VIT I AH+ F E + A Sbjct: 132 PLTLLRIKKEHEIAIIEMGASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKA 191 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E++E + T G IF++YD+S LL+ S GI +IY +G ++ K S Sbjct: 192 KGELYEYIRSTRDGKIFIDYDNS---LLREMSE--GITSIY-YGLEEDL---FISGKVLS 242 Query: 268 EQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++E + + + +V + IG + N L + I L KA+ + P Sbjct: 243 IRPFLEFEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNN 302 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + N LI ++YNANP SM AA+ + + ++ +LGDM E+G + Sbjct: 303 RSQLKETDRNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDT 355 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H +A+ +S +N V G + + PR + +D L +++ + + Sbjct: 356 DLEHQKVADYVSHHNFDRVIFVGDNFSRIITDYPR------FKDLDSLKYYLKENPIADS 409 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K S R I++L Sbjct: 410 YILLKGSRGVQLERCIDVL 428 >gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] Length = 458 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 120/377 (31%), Positives = 181/377 (48%), Gaps = 17/377 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R + P F A++G +DGHDF A + GA ++V+ + L +P V Sbjct: 27 VTTDTRKLTPGCLFIALQGESFDGHDFAARACEAGAAALLVSRRL-----PLGVPQLLVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R + A ++A+TGS GKT+ KEM L+ G+ NN IGV Sbjct: 82 DTRLALGQLAAWVRSQVPARVVALTGSSGKTSVKEMSAAILAQCGNVLYTAGNLNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ DF + ELG +H+GEI + L RPH A++ +A AHL F + +A A Sbjct: 142 PLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLAGVARA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCS 267 K EIF GL GT +N D + ++ + AL + ++ F + DF + + Sbjct: 202 KGEIFSGLPAQGTAIINADSNDWDNWQ---QALPTQRVWRFSPQAGSGVDFYASEVRSEV 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + + V G H N L + + A + + L+ H GR Sbjct: 259 DGTHFVLHTPTGEIAVTLPLPGRHNIANALAAAALTMSVGASLTQVRQGLAGLHAVPGRL 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 R Q L+D+SYNAN SM AA VL + G R+ V+GDM E+G +++ Sbjct: 319 YPIRLGEQQ---LLLDDSYNANVGSMSAAAEVLGAMP----GYRVMVVGDMAELGVEAEA 371 Query: 388 FHIDLAEVLSLYNISHV 404 H + E I V Sbjct: 372 CHRRVGEAARAAGIDKV 388 >gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK678] Length = 456 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYTALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ VHY + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 456 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 205/448 (45%), Gaps = 43/448 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVD 89 DSR I P + F +KG DGHDFI A + GA VA+ + P V+ Sbjct: 32 DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGA---------VATFSEKVVEGHPYILVE 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A LA A ++K + A+TGS GKTTTK+ML LS+ TY G+YNN IG+ Sbjct: 82 DVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGNYNNEIGL 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ MP D + E+G HLG+I L+ L P A++T I AHL F EIA Sbjct: 142 PYTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIGEAHLEFFKDRSEIAKG 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQC 266 K +I +G+ + G + + D L +T+ FG + + RK Sbjct: 202 KLQIADGMPEGGLLVVPADPIVDAYLPEN------QTVVRFGPDEEIFITELIERKDSLT 255 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEG 325 +++E + + V G + A N M V++ + AI+ + Sbjct: 256 FRANFLE---EAIDLPVT----GKYNATNA-MIAAYVALKEGVSEAAIRDSFETLQLTRN 307 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +M+ + S I + GR++AVL DM E+GE S Sbjct: 308 R-TEWKKASNGA--DILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADMKELGEQS 364 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + LS + V G + L + HV+Y + + + Sbjct: 365 VDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPLGHVYYFKKTAEEDQFEDMVKQ 424 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ SL + D +++K SNS +L+ L Sbjct: 425 VKESLKEQDQILIKGSNSMNLGKLVEEL 452 >gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2] Length = 466 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 206/449 (45%), Gaps = 69/449 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR +AF A+KG +D H+F+ G + +V + A I L Sbjct: 32 IPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAEIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTTTKEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + + + ELG +H GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKS----- 253 G + I AK+EI+ + G + D F ++ AKSH I SFG Sbjct: 207 GGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSH-----QIMSFGAGGDVFA 261 Query: 254 -------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++ +FQL + S++ + G+ H QN + L Sbjct: 262 TEIELLPQSVNFQLHTPQGS---SFVRLPFAGE-----------HNVQNATAAVAFALAL 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K L ++ +G + R + + ID++YNANP SM+AA VL Q + Sbjct: 308 GVSLEDIVKGL-----EQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQN- 361 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLAL 414 G ++ V+GD+ E+G+ S H DL L+ + H+ +G H L Sbjct: 362 ---GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKL 418 Query: 415 K------DALP---RSIHVHYSETMDGLF 434 K +ALP I H ++M LF Sbjct: 419 KAFQTQAEALPFLINLIQTHQPQSMSFLF 447 >gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 457 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + Sbjct: 26 LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L++L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ + + D L + + FG A+ + + + Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQ 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453 >gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] Length = 453 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 122/389 (31%), Positives = 185/389 (47%), Gaps = 27/389 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + D+R + F A+ G +D HDF+ A+ GA ++V+ + ++ + Sbjct: 24 VGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVSKHLPVAVPQVV---- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +L R ++KA ++A+TGS GKT+ KEM L +T G+ NN Sbjct: 80 -VADTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTAAILRECGETLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GVP+TL R+ D D+ + ELG +H GEI + T L RP A++ +A AHL F + + Sbjct: 139 FGVPMTLLRLTKDHDYAVIELGANHQGEIAYTTDLTRPETALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-------DFQ 259 A AK EIF GL GT +N D + +L + +G KT++ F A D Q Sbjct: 199 AKAKGEIFAGLPAHGTAIINADSN--DLANWQPQLVG-KTLWRFSPQPQAEVEFGASDIQ 255 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 LR ++ + + + + G H N L + + A + L+ Sbjct: 256 LR-----ADATSFTLHTPRGDIAITLPLPGRHNIANALAAAALALSVDAPLSAIQAGLTK 310 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR R A +Q LID+SYNAN SM AA VL + G R+ V+GDM Sbjct: 311 LQPVPGRLFPVRLAEHQ---LLIDDSYNANVGSMTAAAQVLGDMP----GYRVMVVGDMA 363 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+ +++ H + E I V +G Sbjct: 364 ELGDEAEACHRQVGEAAKAAGIDCVLSTG 392 >gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] Length = 457 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 210/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S +GR + N L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRSQV---KGRLLPIQVTPN---LLLLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 455 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 212/469 (45%), Gaps = 23/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ +L + +QG G F N + DSR IA F A+ G ++DG+D++ Sbjct: 2 MRPM-RLSELQEPLQGRITG-EDVCFTN-VFTDSRQIAKNGLFVALVGENFDGNDYVEAV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ S ++P V+D AL +L R ++AITGS GKT Sbjct: 59 AENGA-----VAALVSRSSSSALPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K ++ LS T A G++NN +GVPLTL R+ + +F + E+G + G+I +L Sbjct: 114 TAKNLINGVLSQRGATLATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWLCE 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +AV+ PAH+ +F +E IA K EIF+ L +N D + E KA++ Sbjct: 174 LGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKARA- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G TI F + +A + + + S++ V +G ++V G H N L Sbjct: 233 --GTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKG-CVDVSLRLPGEHNIANALA 289 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +D L P G R + +ID+ YNANP S AAI Sbjct: 290 AIAVGLACELALDEIAAGLESVAPVAG---RLSVQVAASGALVIDDCYNANPGSALAAID 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ EG+ V+G M E+GE S H L ++ W G + DA Sbjct: 347 TLAA----SEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVGAELKVAVDAF 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + E D + +S GD V++K S R++ L+ + Sbjct: 403 GE--RGRWFEHCDQAVVAASASFSQGDTVLIKGSRGARMERVLQALVPD 449 >gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 466 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 127/419 (30%), Positives = 192/419 (45%), Gaps = 22/419 (5%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +PQ + I DSR + F A+KG +D HDF+ G + +V + I L Sbjct: 32 IPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVDIAQL 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V D AL +L R + ++ +IA+TGS GKTT KEML LS + T Sbjct: 92 V-----VADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAPTLITR 146 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN +GVP+ L + + F + ELG SH GEI + + LV+PH+A I I AHL F Sbjct: 147 GNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVAGILNIGTAHLGEF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E I AK+EI+ + G + D F + + A I T G D +L Sbjct: 207 GGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEIHKAAQAHRISTFGVGGDIYATDIEL 266 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + + V G H QN + L ++ ++ L Sbjct: 267 -----LPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFALALGIGLEDIVQGL--- 318 Query: 321 HPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 ++ +G + R + + + ID++YNANP SM+AA VL Q +G ++ V+GD+ Sbjct: 319 --EQAQGAKGRLNFIQKSPYLFIDDTYNANPNSMRAAAQVLLQ----QQGIKVMVMGDIG 372 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437 E+G+ S H DL L+ + H+ G F AL+ A S V +T F+ Sbjct: 373 ELGDSSWQEHHDLGHDLAQLPLDHIIAVGQFASAALEGADSHSNKVKAFQTQAEALPFL 431 >gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] Length = 453 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 17/380 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R + F A++G +D HD+ + AV GA ++V+ + + +P Sbjct: 24 ISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVNNGAAALLVSKHL-----PIDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL +A R +S+A ++A+TGS GKT+ KEM L G++NN Sbjct: 79 VVDDTRLALGVMAGWVRQQSRARVVALTGSSGKTSVKEMAASILRQCGNVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + D+ + ELG +H+GEI + T +VRP A++ +A AHL F +E + Sbjct: 139 IGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--KNADFQLRKWK 264 A AK EIF GL G +N D + + L KT++ F DF + Sbjct: 199 AQAKGEIFGGLPAQGVAIINADSNDEARWQ---DVLTGKTLWRFSPQGHDGVDFYASDIR 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + V G+H N L + + A ++ L Sbjct: 256 VSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAATALALTVGASLEAVKVGLEQLQAVP 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + AL G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ Sbjct: 316 GR--LFPIALAPGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELGQD 368 Query: 385 SQSFHIDLAEVLSLYNISHV 404 +Q+ H + E NI V Sbjct: 369 AQACHRQVGEAARKANIDKV 388 >gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] Length = 455 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP G I DSR+I+ + F +KG DGH+FI A GA +A+I Sbjct: 24 VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70 Query: 82 SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I P V D L A LA + +IA+TGS GKTTTK+M+ LS+ KTY Sbjct: 71 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P IAV+T I AHL Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E+IA K +I +G+ G + D L A + FG + + Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q+ + K+ E+ + + ++ G + A N ++ + +L + + AL Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + + A ++ + YNANP +M+ + S I + G++IA+L DM Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429 E+GE S H + + +I + G + L + + + Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEELAQLASQMFPIGKVYFFKKNQEVDQ 417 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D L ++ +L + D +++K SNS +++++L Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452 >gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae TIGR4] gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] Length = 457 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 215/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] Length = 452 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 130/445 (29%), Positives = 221/445 (49%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+SI++R++ P + F +G + +GH ++ A++ GA + D + L P+ Sbjct: 23 ITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGASASLWQRDEPGAPEDL--PLL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL ++A A R A +I ITGS GKT+TK+++ L K G++NN Sbjct: 81 FVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLVASVLKPYFKVQKTPGNFNNQ 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLT+ + D + E+GMS G+I FL+ L RP A+IT I AHL + E I Sbjct: 141 LGLPLTILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL++ G +F + D+ + ++ G+ SFG N + + K Sbjct: 201 AEAKFEITAGLQQHGKLFYDGDEPLLQPF-MEAFPQGV----SFGFDDNNELTVTDIKAT 255 Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S S+M + + + +G H +N L + + + K+L + Sbjct: 256 ESGSSFMVSGIIDAAFTIPV--LGEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDM 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + A N F I+++YNA P+SM AA++ + + + + ++ VLGDM E+G+ Sbjct: 314 RMQMIQ-ADNGAIF--INDAYNAAPSSMNAALNFIRETT--MKDKKWVVLGDMLELGDDE 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVD 443 QS+H L++ +S N+ V L G + L D L + + +SE G + + + Sbjct: 369 QSYHEALSKCIS-DNLVGVCLYGPRMKWLYDKLQPTYGGRLLWSEADYGPIIDLLKKYTN 427 Query: 444 GD-VVVVKSSNSCGFYRLINLLLEE 467 D V++VK S +I + E Sbjct: 428 KDSVILVKGSRGMALENVIEPFVNE 452 >gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] Length = 453 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 127/394 (32%), Positives = 193/394 (48%), Gaps = 24/394 (6%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I + P N + DSR I + F +KG DGHDFI A + G Sbjct: 4 TLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV V SL +P V+D L AL +LA ++ +IA+TGS GKTTTK+ Sbjct: 63 C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++VIT AHL F EEIA K +I +G+E + + +LL SH I Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPAYPIADKLL--PSHVDLI 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG+ AD Q+ + + V ++ G + A N ++ + Sbjct: 234 R----FGEQ--ADLQVTSLVESKDSLTFTVNFM--DGDIFLPVTGKYNATNAMVASYVGK 285 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + AL+ + R ++ A N ++ + YNANP +M+ + S I Sbjct: 286 TLGVSNEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLILETFSSIP 342 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + G++IAVL DM E+G SQS + +LSL Sbjct: 343 ANEGGKKIAVLADMKELG--SQSVELHNQMILSL 374 >gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] Length = 473 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 203/449 (45%), Gaps = 28/449 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR + F A G DGHD+ AV+ V + + P VD Sbjct: 31 VVIDSREVRQGSLFAAFAGERVDGHDYARAAVEA-------GAVAVLAARPVGCPAIVVD 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV+ AL LA A R ++A+TGS GKT+TK+++ L T GS NN IG+ Sbjct: 84 DVVAALGALACAVVERLGTAVVALTGSAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT + + E+G +G I +L L P I ++ + AHL F E IA A Sbjct: 144 PLTALTATAETRHLVLEMGARGVGHIHYLAQLTPPTIGLVLNVGSAHLGEFGSREAIAQA 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K E+ E L + G LN DD + A++ A + FG++ +AD + + + Sbjct: 204 KGELVEALPEDGVAVLNADDPLVRAMAARTQA----RVVLFGEAPDADVRGENVRLTDDG 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +V G H N L + L V +ALSV G Sbjct: 260 RPAFALHTPTGCSDVTLRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSVA----GTLS 315 Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGE 383 R+R + + T+++++YNANP SMKAA+ L+ + GR AVLG M E+G+ Sbjct: 316 RWRMEVTERPDGVTVVNDAYNANPESMKAALRALAAMGKAARAEGGRTWAVLGQMAELGD 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 S + H + + N+S + G + A + VH S+ + L + Sbjct: 376 ASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 434 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +S L GDVV+VK+S S G ++ LLE Sbjct: 435 RSELRPGDVVLVKASRSVGLEKVALALLE 463 >gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus HN001] gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus HN001] Length = 462 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 213/438 (48%), Gaps = 31/438 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + P F ++G DGH+FI A GA V D + L P Sbjct: 27 TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83 Query: 88 VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ KLA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F +I Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----- 260 A AK EI +GL++ GT N D+ LL +++ + ++ +FG +N F Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R + + + W E+ M G + N L L + + KAL+ F Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALAHF 312 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + + ++ + YNANP +MKA I S+ GR IAVLGDM E Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435 +GE S++ H LA+ L + I V+L G + AL +AL P+ +H + + + Sbjct: 368 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427 Query: 436 FIQSSLVDGDVVVVKSSN 453 +Q+ + D+V++K+S+ Sbjct: 428 DLQNDVGHDDMVLLKASH 445 >gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 457 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 221/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELGITDLVERKDSLTFKVNFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 466 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 122/382 (31%), Positives = 191/382 (50%), Gaps = 13/382 (3%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ +I+G + + VNG+ IDSR + P FFA KG DGHDF+ A + GA V+ Sbjct: 8 VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + + V+D L AL LA A R ++A+TGSVGKT+TK++L + Sbjct: 68 VSRGDCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDILALC 127 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L S KT G+YNN IG+PLTL ++ + E+ M GE+ L + +P A+I Sbjct: 128 LQSRFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLATIAQPSSALI 187 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + + HL +E IA AKAE+ L +N D LL+ K Y Sbjct: 188 SNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSP---LLEEAVRPYAAKK-YR 243 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 FG SK+ DF++ + + +E++L G+S ++ A N + + +L Sbjct: 244 FGYSKSCDFRIE--ETIIKNQGIEIRLICLGQSEKLFLPLPSRRWAMNAVAAAAMAFLLG 301 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +L F+P G + L G +I+++YNANP SM A+ ++ Sbjct: 302 VPLEEIKSSLLNFNP--GSKRLEIIPLPDG-GKIINDTYNANPLSMINALETSRELQE-- 356 Query: 368 EGRRIAVLGDMCEMGELSQSFH 389 +G+ +AVLGDM E+G+ Q H Sbjct: 357 KGKLVAVLGDMLELGDYEQEGH 378 >gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] Length = 457 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + + Sbjct: 26 INQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGALATFTEKELPAD----QVHIL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A KLA +++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDALEAFQKLAAYYLEKTEVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ + + D L + + FG A+ + + Sbjct: 200 AQGKMQMQDGMPDGSLLLVPSDPIVNPFLPSNLE------VVRFGDG--AELTVSDLTEF 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTNFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDMVIFYGEDIAELSQLASQMFPLGHVYYFKKTADEDQFDAMVKQ 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEHDQILLKGSNSMNLAKVVEEL 453 >gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 440 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 128/443 (28%), Positives = 215/443 (48%), Gaps = 37/443 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ +DSR++ + F +KG DGHD+I + KGA V+V+ I +L + Sbjct: 23 VQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVD----HKIDNLDVCQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD + AL A A R AT I ITGS GKT+TK++L LS + + A + N Sbjct: 79 IVDDTMAALQLFAKAYRDTLNATFIGITGSNGKTSTKDILFSILSRVGNSIATYKNQNTE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG L L RM D +FGIFE+G+ ++G++ + +RP ++ ++APAH+ NF IE I Sbjct: 139 IGTYLNLFRMNDDTEFGIFEMGLDYVGDVAVMAECIRPDAGLVMSLAPAHMMNFDSIEHI 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AS K IF+ + F D FE ++ SH ++FG +++ ++ + Sbjct: 199 ASEKMRIFDFVTHKDLSFYQGD---FEQYRSISHGE-----HTFGFNEDNEWVVSDVS-- 248 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK------ALSVF 320 S + +L G + + +G H A N + ++S L D D I+ AL+ Sbjct: 249 SNNHGISFKLDGVAYS--SNLLGNHQASNCAGVIALLSKLGID-DAVIREGLNHVALTSL 305 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + + +G ++ ++Y +NP S K A+ +L+ G+ R+A+L DM E Sbjct: 306 RTE---------LVEKGNALVLLDAYKSNPISAKYALDLLAHYEYDGD--RVAILSDMVE 354 Query: 381 MGELSQSFHIDLAEVLSLYNI--SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 +G S H+++ + + NI +H F AL D+ + +T + + Sbjct: 355 LGPESHKAHLEVLDCIQDLNIKMAHTLGPEFKK-ALSDSRLDASRFTNDDTFEAFVERVT 413 Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461 + ++++K S S RL+ Sbjct: 414 PCFDEHAMILIKGSRSYQLERLM 436 >gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus ND03] Length = 457 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + Sbjct: 26 LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L++L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ + + D L + + FG A+ + + + Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQ 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453 >gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI18] gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA6140] gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID24-1] gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] Length = 452 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 24 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAA+ VL+++ RI V+GDM E+G Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 368 Query: 383 E 383 E Sbjct: 369 E 369 >gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] Length = 457 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 30/448 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGHDFI A GA ++ A + Sbjct: 26 LNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKELPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A +LA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L++L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ +G+ + + D L + + FG A+ + + + Sbjct: 200 AQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLE------VVRFGDG--AELTVSELTEY 251 Query: 267 SEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + L G +V G + A N ++ + L + + AL+ + Sbjct: 252 KDHLTFSTKFLDG---QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKN 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE S Sbjct: 309 R-TEWKKAANGA--DILSDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQS 365 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLFLF 436 H + L+ I V G + L + HV+Y + D + Sbjct: 366 VQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQ 425 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS +++ L Sbjct: 426 IKESLGEYDQILLKGSNSMNLAKVVQEL 453 >gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 452 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 24 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAA+ VL+++ RI V+GDM E+G Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 368 Query: 383 E 383 E Sbjct: 369 E 369 >gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] Length = 455 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 38/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP G I DSR+I+ + F +KG DGH+FI A GA +A+I Sbjct: 24 VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70 Query: 82 SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I P V D L A LA + +IA+TGS GKTTTK+M+ LS+ KTY Sbjct: 71 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P IAV+T I AHL Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E+IA K +I +G+ G + D L A + FG + + Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q+ + K+ E+ + + ++ G + A N ++ + +L + + AL Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + + A ++ + YNANP +M+ + S I + G++IA+L DM Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---------HYSET 429 E+GE S H + + +I + G + L + + + Sbjct: 358 KELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFPIGKVYFFKKNQEVDQ 417 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D L ++ +L + D +++K SNS +++++L Sbjct: 418 FDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDIL 452 >gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] Length = 466 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 54/439 (12%) Query: 52 DGHDFILHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 DGH+FI A+ KGA +V ++ S +IPV + L AL KLA R R Sbjct: 54 DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPV---KNTLTALGKLASFHRSR 110 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFG 163 +IA+TGS GKTTTKE+L L +++++ + +YNN IG+P TL ++ Sbjct: 111 FDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLPFTLFKISDQTRVV 170 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + ELGM+H GEI L+ + +P A+ITTI AH+ + IA AK EI EGL+K G + Sbjct: 171 VCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAKGEIVEGLKKGGKL 230 Query: 224 FLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 F + ++LK K+ G K I+S + K++ F L Sbjct: 231 FYPNTGEYSKILKNKTRKHGNKLVLTKSDKIFSILQKKSSGF----------------LL 274 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + K+ ++ + G + +N+ + + + + + + + F + R L Sbjct: 275 EYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSF-----KSSNKRLDLQN 329 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEV 395 G +++I+++YNAN SM +++ V Q++ +G+ AVLGDM E+GE S+ FH L + Sbjct: 330 GKYSVINDTYNANYESMISSLEVADQLA---DGKEFYAVLGDMKELGEYSKEFHKKLGKK 386 Query: 396 LSLY-NISHVWLSGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQS---SLVDGD 445 S + N+ ++ G +++ PR H+ T +GL I ++ +G Sbjct: 387 CSEFQNLKGLYTFGTDSFWIQEEFVKRTSSPR-FSEHFPGTQEGLSELIHKFLQTIPEGS 445 Query: 446 VVVVKSSNSCGFYRLINLL 464 +V+ K+S R + L Sbjct: 446 IVLAKASRGIQLERFVEAL 464 >gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 433 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 31/388 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI I+S+ + FFA+KG ++DG+ F A+ GA + +V+ ++ S +I F V Sbjct: 15 GIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVD-NIKYSFSHKNI--FFV 71 Query: 89 DDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----Y 143 + L +L +LA+ RL+ ++ IIAITGS GKTTTKE+ T LS K Y + S + Sbjct: 72 KNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILS---KKYEVVHSTEKNF 128 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLTL MP + + E+G + EI+ + ++ P+ IT AHL F I Sbjct: 129 NNHIGIPLTLLSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITNFGKAHLEGFKNI 188 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--- 260 + + K E++ L+K D +L+ H+LGI Y F + N+D + Sbjct: 189 KGVIRGKLELYNFLKKNKKKVFVNGDDPIQLI----HSLGIDR-YIFSERINSDVDVPIK 243 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 WK+ +S + + K M++V +G + N+ + I + + KA+ + Sbjct: 244 YFWKKTDLKSVLCI----KDMQIVSSLVGSYNLYNIASAITIGNYFKVPLKKIKKAVEDY 299 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + L + +I + YNANP+SM ++ ++I +G +IA+LGDM E Sbjct: 300 IPNNYRSQ----ILEKENVKIIVDCYNANPSSMIETLTFFNKI----QGNKIAILGDMLE 351 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G S+ H + L NI+ ++L G Sbjct: 352 LGSFSKKEHAKIISFLEKSNINAIFLIG 379 >gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] Length = 456 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V ++ VA+ P VDDVL A +LA ++ + A+TGS GKTTTK+ Sbjct: 63 AA-VTLSEKRVANH-----PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADPIVEDYLPTD------ 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + KA R ++ A N ++ + YNANP +MK + S Sbjct: 284 VALQEGVSEEQIHKAFQNLELTRNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] Length = 463 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 35 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 91 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAA+ VL+++ RI V+GDM E+G Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 379 Query: 383 E 383 E Sbjct: 380 E 380 >gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] Length = 466 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 122/395 (30%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + D+L G G P + DSR++ P + F A++G +DGHDF+ AV++G Sbjct: 3 SLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V + +L IP+ VDD L AL +LA R + A+TGSVGKT+TKE Sbjct: 63 AAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKE 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVR 183 + L+ + S+N +G+ L L + + D + E G ++ LGE+R L L Sbjct: 123 AIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCALAE 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T ++ AHL+ IE IA + AE+ E L G LN DD L+ ++ A Sbjct: 183 PRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPA-- 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMAQ 294 + +G S + + + + L G S ++V G +G H Sbjct: 241 --RVLLYGLSPDCHVRAEEIESRG--------LDGISFDLVAFGERNRVRLPLLGQHSVH 290 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + L + + L ++ + L FH + + G TL+D++YNA+PAS Sbjct: 291 HALAAIAVGYELGLTLE---EMLPGFHDPRVQVRLLTVPGING-ATLLDDTYNASPASCM 346 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AA+S+L++I RRIAV GDM E+G + H Sbjct: 347 AALSLLAEIPAQ---RRIAVFGDMYELGWYEEEGH 378 >gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] Length = 487 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 137/489 (28%), Positives = 216/489 (44%), Gaps = 37/489 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHAV 61 T D+L A G + +NG +SR I F I G D H+FI V Sbjct: 4 TVQDILNATNGRLLNGSADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVV 63 Query: 62 QKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + GA + ++ + IG + V+D AL + R + I ITGSVGK Sbjct: 64 ENGAKAFFIKKGHELPSGIGETA--AIEVEDTEAALLDTGLWYREKFNIPFIGITGSVGK 121 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM+ ALSSI + G+ N+ IG+PLTL + + I E+G+S E+ L Sbjct: 122 TTTKEMVAAALSSIN-IHKTKGNANSTIGLPLTLFGLEPCNEAAIIEMGISEFHEMEKLV 180 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 RP+ A+ T + AH+ N E I K I + +F+N DD + A++ Sbjct: 181 EAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFTADSVLFINADDELLMKVAAEN 240 Query: 240 HAL---GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYH 291 +K I +FG ++ ADF + + ++ E V I G H Sbjct: 241 SEFRPKNVKHIVTFGINEKADFYASSITISDSGTDFVANYKSENGEAVSEQIHLKTLGLH 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 +N L + + L + K L+ + P GRG + T+ID++YNA+P Sbjct: 301 NVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGN----IIKSNGLTIIDDTYNASPD 356 Query: 352 SMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406 SMKA++ ++ ++ E RR V D+ E+GE +++ H + E + YN + Sbjct: 357 SMKASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHYKVGEYIKFYNKENTENKID 416 Query: 407 --------SGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 S +L +K D + H+S ++ +++S L GD +VVK S Sbjct: 417 CLITVGKDSEQIILGVKSEDLETNPVTRHFSTNVEASD-YLKSLLKKGDAIVVKGSRGMQ 475 Query: 457 FYRLINLLL 465 +IN +L Sbjct: 476 TEEIINSIL 484 >gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] Length = 471 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 208/446 (46%), Gaps = 29/446 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR++ P F ++G +DGH F+ +AV++GA V D ++ + + V+ Sbjct: 32 VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAHAVPD-GLLHWRVE 90 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A +LA R + A ++A+TGS GKTTT+E++ AL+ + A + NN IGV Sbjct: 91 DTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + E+GM GEI L+ P IAVIT I AH+ IASA Sbjct: 151 PLTLLGAHREHAAVVVEMGMRGAGEIERLSRCAEPQIAVITNIGTAHIGRLGSRAAIASA 210 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI L G + + D+ E ++ I + G ++ + Sbjct: 211 KCEITAALSPLGIVVIPAGDALLEDALSRCWTGRILRVALDGDEPENGPEV---SGLTSG 267 Query: 270 SWMEVQLQG----KSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 L G + + +G+ G H A+N ++ L + L + T I+AL Sbjct: 268 DLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHNARNFMLALAVAQELKVSLQT-IQALD 326 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V P GR +R L+ G L+DE+YNA+P ++ AA+ +L+ H GRR AVLG M Sbjct: 327 VQVPG-GRNRR----LSLGGIALLDETYNASPEAVFAALQLLA----HQPGRRYAVLGTM 377 Query: 379 CEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 E+G S H +A+ L L + V G A++ A ET + L Sbjct: 378 LELGSRSVDLHRRVAQKAVDLQLDGLV-VVAGGEEGEAMEVAAGSLSRFERVETPEQAAL 436 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461 + L GD V++K+S RLI Sbjct: 437 PLAEWLKPGDTVLLKASRGVALERLI 462 >gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 483 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 221/463 (47%), Gaps = 53/463 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + F ++G H DGH ++ A GA + +D + + PV Sbjct: 50 VTSVSFDSRHLERGALFIPLQGAH-DGHQYVETAFTNGAAATLWASDH--ELTNNGHPVL 106 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSY 143 V D L AL +L + ++A+TGS GKTTTK+M+ LS+ + KTYA ++ Sbjct: 107 VVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQLNVTKTYA---NF 163 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL M + + + E+GM G++ FL+ LV P IAVIT I AH+ F Sbjct: 164 NNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTR 223 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD------ 257 + IA AK EI GL++ G + + D+ LL ++ + +T FG+ D Sbjct: 224 DRIADAKMEIVNGLKEDGLLVYDGDEP---LLNERAAKVAQQT-SRFGRQLTDDLYATSV 279 Query: 258 --------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 F++ +W EQ + + +G + N L + + L Sbjct: 280 TAGPRSISFKVNEW--PDEQFTIPM-------------VGEYNVNNALAAMVVAKRLHIS 324 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 AL+ E R + ++ + ++ + YN+NP + K + L+ + +G Sbjct: 325 PAHIKTALANVELTENRAEWFKS---KNGAQILSDVYNSNPTAAKQVLKTLAAMPV--QG 379 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------PRSIH 423 RRIAVLGDM E+G+ + H LA ++ I V+L G ++ L+ L +IH Sbjct: 380 RRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSKLLEQGYPATAIH 439 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +++ + L +++ L D+V++K+S+ +++ + E Sbjct: 440 YYHANQLGQLTATLEADLTASDMVLLKASHGLHLEQVLAAIKE 482 >gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] Length = 452 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 140/463 (30%), Positives = 219/463 (47%), Gaps = 25/463 (5%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++ +A G +G Q ++ +S DSR I + F A+ G +D HDFI ++GA + Sbjct: 8 EIAKACDGRLVGADCQ--ISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAVQEQGATAL 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V+ ++ ++P V D AL +A A+TGS GKTT KEML Sbjct: 66 LVSKEV-----DTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKTTVKEMLAS 120 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L+ + A G++NN IGVPLTL R DF + ELG +H EI + T L +P++A+ Sbjct: 121 ILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNVAL 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + IA AHL F IE +A AK EIFEGL++ G N D + L S K + Sbjct: 181 VNNIAAAHLEGFGSIEGVAKAKGEIFEGLQENGIAIYNLDSNG---LPKWSSLFEGKQVV 237 Query: 249 SFG-KSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 SF +ADF + E S+ +G +++V IG H N + + Sbjct: 238 SFAMDDSSADFYASNIEVNAIGEPSFQLNTPKG-NIQVSLGIIGKHNVANAVAAAALAIQ 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A ++ + L +GR A +ID++YNA+ +MKAA+ +L Sbjct: 297 AHASLNDIQQGLQELGSVKGRVAVETLASG---LKVIDDTYNASVPAMKAAVDLLGGF-- 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 +G+R VLG+M E+GE S + H ++ E + Y V G + + L H Sbjct: 352 --KGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISE-LCNGRHFE 408 Query: 426 YSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466 ++ +L + L+ + V+VK +NS +++ L E Sbjct: 409 TRSDLNA-YLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 450 >gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] Length = 457 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 210/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNIKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S +GR + N L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRSQV---KGRLLPIQVTPN---LLLLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 24 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 200 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SM+AAI VL+++ RI V+GDM E+G Sbjct: 316 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGELG 368 Query: 383 E 383 E Sbjct: 369 E 369 >gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14] Length = 453 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 36/392 (9%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I + N + DSR + + F +KG DGHDFI A + G Sbjct: 4 TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV V SL +P V+D L AL +LA ++ +IA+TGS GKTTTK+ Sbjct: 63 C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 115 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P Sbjct: 116 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++VIT AHL F EEIA K +I +G+E + + D +LL SH I Sbjct: 176 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL--PSHVDLI 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM------ 298 + FG + AD Q+ + + V ++ G + A N ++ Sbjct: 234 R----FG--EQADLQVTSLVESKDSLTFTVNFMDG--DIFLPVTGKYNATNAMVASYVGK 285 Query: 299 TLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 TLG+ D AIK AL+ + R ++ A N ++ + YNANP +M+ + Sbjct: 286 TLGV-------PDEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLIL 335 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + I + G++IAVL DM E+G S H Sbjct: 336 ETFTSIPANEGGKKIAVLADMKELGSQSVDLH 367 >gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 463 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 35 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 91 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 150 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 151 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 210 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 211 VGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFKTATFNLNTCTFGVDSGDVRAENIVLK 270 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 271 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 326 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAA+ VL+++ RI V+GDM E+G Sbjct: 327 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 379 Query: 383 E 383 E Sbjct: 380 E 380 >gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale DSM 17629] Length = 464 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 140/479 (29%), Positives = 219/479 (45%), Gaps = 42/479 (8%) Query: 6 TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ +A +G IG + + G IDSR + F IKG DGH FI + ++ Sbjct: 10 TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPNVFEQ 69 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ ++ G P V A+ KLA R ++ ITGSVGKT+TK Sbjct: 70 GAAIVLSEHELKDPAG----PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM++ L + G++NN IG+PLT+ + + E+G+S GE+ L+ + Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + VIT I HL + + AK E FE + LN DD ++ + G Sbjct: 186 PDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVN---G 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME------VQLQGKSMEVVHHGIGYHMAQNML 297 IY +GK +D + E + V +G+ + H G H N + Sbjct: 243 KPAIY-YGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGE-FDAQIHIPGEHNVYNAM 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYNANPAS 352 + L L++ K G K A F T+ID+ YNANP S Sbjct: 301 AAAAVGLQL---------GLTIAEIKAGIEKAETIAGRTNFIKTHGMTVIDDCYNANPVS 351 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 MK++I VLS H +GR IAVLGDM E+G + H ++ E + +I ++ +G L Sbjct: 352 MKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAG--EL 405 Query: 413 ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + A + +HY E + + + S + +GD ++VK+S+ F +++ L E Sbjct: 406 AKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464 >gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] Length = 455 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 130/463 (28%), Positives = 214/463 (46%), Gaps = 16/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + +Q + + V GI D+R I + F G DGH+F+ A + GA Sbjct: 4 TLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 D+ P+ VDD L AL + A +IA+TGS GKTTTK++ Sbjct: 64 SAAFWQKDVPNPPADF--PLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ L + + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 LSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSQIAQPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I AH+ EEIA+AK EI GL+ G +F+ D E L + AL + Sbjct: 182 IAIITNIGEAHIEYLGSREEIANAKFEIVTGLKADG-LFIYPGD---EPLLTEHTALPAR 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ +FG++ A K SE+ Q E IG H N + + Sbjct: 238 SV-TFGRTDQATIFATTIK-TSEEGTTFTTNQTADREFYVPIIGEHNVFNSMAAMLAAFE 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + +T AL H + + +G +++++YN++P ++K ++ + Sbjct: 296 LGVEPETIQTALR--HIDRSKSRLEWLTTPKG-SRILNDAYNSSPTALKTVLNTFLNMPT 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422 ++ VL DM E+G+ S+ H + A L ++ V+L G + D I Sbjct: 353 --AAKKYLVLADMLELGDFSEQLHQESARTLENGEVAGVFLYGTAMKNFADEAASLIGQE 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VHY + L + ++L + ++VK S S G ++ L+ Sbjct: 411 KVHYFTDKEALTDAVSNALTGNEWILVKGSYSMGLKDVVEKLM 453 >gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] Length = 457 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 40/477 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E L I Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE------DYLPI 229 Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIA 281 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 339 FSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLAS 398 Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 399 QMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] Length = 452 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 137/464 (29%), Positives = 213/464 (45%), Gaps = 23/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG S F++ +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATQGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRAVD----GIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ D + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + + + Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 236 KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420 R+IA+LGDM E+G+ ++ H ++ ++L+ S V+ G F K A Sbjct: 351 GK---RKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + M + I+ GDV++VK S R++ L Sbjct: 408 TFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448 >gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 456 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 129/442 (29%), Positives = 214/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGH+FI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP + + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 ILHMPENTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG ++D L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDSDIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGVSEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 ASNGA--DILSDVYNANPTAMRLILETFSTIPTNPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ V Y + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYD-YAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 431 PADQILLKGSNSMNLAKLVEDL 452 >gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] Length = 436 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 19/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 8 VSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGG----AL 63 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSY 143 VDD L AL LA A R + ITGS GKTT KEML L A G++ Sbjct: 64 KVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNF 123 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F G Sbjct: 124 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDG 183 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI+ GL G + +D+ + K + L T A+ + K Sbjct: 184 VGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFGVDSGDVRAENIVLK 243 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 244 PLSCE----FDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 299 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + + TLID++YNANP SMKAA+ VL+++ RI V+GDM E+G Sbjct: 300 IKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMGELG 352 Query: 383 E 383 E Sbjct: 353 E 353 >gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 481 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 180/373 (48%), Gaps = 18/373 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR F AIKG DGH F+ +GA +V+ ++ + ++P V+D + Sbjct: 33 DSRQAGSGAVFVAIKGERVDGHGFVDKVADQGAAAAIVDHEVACT----TMPQIVVEDTV 88 Query: 93 GALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 AL LA +L +I +TGSVGKTTTK++L+ LS++ T A IGS+NN I Sbjct: 89 AALGLLAKHNIDRRRQLPGAFDLIGLTGSVGKTTTKDLLSALLSTLGPTVAPIGSFNNEI 148 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLT R+ D F + E+G +H+GEI LT + P+ ++ + AHL F E IA Sbjct: 149 GLPLTALRVNADTRFFVAEMGANHIGEIARLTRIAPPNTVIVLRVGVAHLGEFGSRERIA 208 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK+EI +GL GT LN DD + ++ A G + G +++++ + Sbjct: 209 QAKSEIVQGLLPGGTAVLNADDDY--VVPMAQFASGDVLWFGQGHTRDSEVHADHIAADA 266 Query: 268 EQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +V VH GI G H N L + + + L+ H Sbjct: 267 ADHAEFTMTDAHGEQVAVHLGIPGRHNVMNALAAATVALRYGMPLTAIAQTLAAQHTISP 326 Query: 326 RGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEM 381 QG F LID+S+NANP SMKA + L + + +GR R+A+LG M E+ Sbjct: 327 HRMALSTVSRQGASFELIDDSFNANPDSMKAGLDGLRAWNAN-DGRQPFRVALLGAMLEL 385 Query: 382 GELSQSFHIDLAE 394 G + H + E Sbjct: 386 GADERELHASVGE 398 >gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17570] Length = 457 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 40/477 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E L I Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE------DYLPI 229 Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIA 281 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 339 FSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLAS 398 Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 399 QMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] Length = 457 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] Length = 474 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 220/467 (47%), Gaps = 36/467 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL ++ A+ G + P V G + DSR + P F A G DGHD+ Sbjct: 1 MIPL-RLAEVAAAVGGRLVAADPTAAVTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 A++ GA + V+ T V ++ P+ VDD AL +LA A R T+I +TGS G Sbjct: 60 AIRAGA-VAVLGTRPVPAV-----PMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ S + T A GS+NN +G P T + D + + E G +G IR+L Sbjct: 114 KTSTKDLIAALTSRLGPTVAPPGSFNNELGHPYTALQAGPDTRYLVLEKGARGVGHIRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AH+ F E IA AK E+ L G LN DD + + Sbjct: 174 CDVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVLNADDGLVAAMATR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 + A I+ +G++ AD + + S+ V +G++ V G+ G H N Sbjct: 234 TQARVIR----YGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAP--VRLGLTGRHQVSN 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASM 353 L + ++ + L++ + G R + + T+ID+SYNANPASM Sbjct: 288 SLAAAAVAR----ELGMPLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASM 343 Query: 354 KAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L+ I G+ RR +AVLG M E+G H+++ + + + + + G Sbjct: 344 EVALRALASI---GQRRRTVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVVGEAAA 400 Query: 413 ALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + + S+ V ++ D + + ++ L GDVV+VK S Sbjct: 401 PIHEGA-TSVRDWGGESVQLTDQADAVEV-LRGDLRPGDVVLVKGSR 445 >gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 457 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLVPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] Length = 451 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 129/407 (31%), Positives = 191/407 (46%), Gaps = 64/407 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--GLVVVNTDMVASIGSLSIP 84 + G++IDSR+I F KG + DGH FI A++ GA T++ + P Sbjct: 26 IKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGAVASFSEKGTELSEDVEG---P 82 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V+D L AL LA A +IA+TGS GKTTTK+M+ L++ K G+YN Sbjct: 83 IIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSNGKTTTKDMIESVLTTEFKVKKTQGNYN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLT+ + D + I E+GMS EI L+ + P IAVIT I +H+ + E Sbjct: 143 NEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLGSRE 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+EI GL+ GT + D+ H K Sbjct: 203 GIAKAKSEITIGLKDNGTFIYDGDEPLL-----TPHV----------------------K 235 Query: 265 QCSEQSWMEVQLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q + + V L + V H GIG+ + + L I+ I ++ A A++ Sbjct: 236 QIQQAKLISVGLGDANSLVCHVDDVETEGIGFTINNDESYVLPILGI--HNMKNAAIAIA 293 Query: 319 VFHP--------KEG---------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V H KE R +R++ N T+I+++YNA+P SMKAAI LS Sbjct: 294 VGHELGLPYATIKENIRHVQLTGMRMERHQTDDN---VTVINDAYNASPTSMKAAIDTLS 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + EGR+I +L D+ E+G SQ H ++ L +I ++ G Sbjct: 351 SM----EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFTYG 393 >gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41317] Length = 457 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 214/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGQDIAQLAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] Length = 462 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 136/456 (29%), Positives = 213/456 (46%), Gaps = 53/456 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P F ++G ++DGH F+ A +GA VV+ D I ++ + VDD L Sbjct: 31 DSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAKAAVVSKDSTVQIPE-NLICWRVDDTL 89 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA+ R R ++A+TGSVGKTTT+E++T L+++ + + NN IGVP T Sbjct: 90 QAYQQLALLHRQRLSIPVVAVTGSVGKTTTRELITACLTTLGAITSTSDNNNNDIGVPQT 149 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + + I E+ M LGEIR L+ P IAVIT I AH+ + IA AK E Sbjct: 150 ILQADFSDAALILEMAMRGLGEIRRLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCE 209 Query: 213 IFEGLEKTGTIFLNYDDSFFE----------LLKAKSHALGIK-TIYSFGKSKNAD---- 257 I L +GT+ + D + +++ LG + T S+ K D Sbjct: 210 ITTCLNPSGTVIIPAGDPLLDSILSEKWPGRIIRVGLMPLGEEHTSASYIKKNAVDLLGV 269 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L ++ + + L+G +H+ + + +A + + LGI ++ + Sbjct: 270 LDLNNNSLSVDKEALTLPLEG-----MHNAVNFMLAIAVALELGI----------SLSNM 314 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + H K G R C G T++DESYN++P S+KA++ +L GR AVLG Sbjct: 315 NNLHVKTPCG-RNSC-FTYGNLTVLDESYNSSPESVKASLDLLVT----KPGRHFAVLGT 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF- 436 M E+G+ S FH SL V LS V+ + D V + + +F Sbjct: 369 MFELGDESIKFH-------SLIMQHAVDLSLDGVIVVSDGEEAEAMVAVGKQLPNFSIFS 421 Query: 437 --------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +QS L GD +++K+S G +L+ L Sbjct: 422 QPEEALPYLQSILKPGDNLLLKASRKIGLEKLLPFL 457 >gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] Length = 609 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 201/403 (49%), Gaps = 36/403 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI +G+ ++ + KGA LVV + + V Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVVADNTNIKDK-----RVV 249 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + LA R + ++ ITGS GKTTTK+++ LS+ KT G+YNNH Sbjct: 250 KVIDTIATMQDLATKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + + Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ E ++K T F+ DD + LG + G ++N D+++ ++ Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIESYEFS 418 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323 ++ S + L GK E+ +G H N +T+ + + + ++ +K + + + Sbjct: 419 NKGS--KFVLDGKEYEM--SLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNM- 473 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 474 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 525 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 ++HID+ L I ++L G + D ++ Y Sbjct: 526 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568 >gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 442 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 216/453 (47%), Gaps = 31/453 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + FFA+KG ++D H ++ A ++G VV +I L Sbjct: 8 VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEGNIARLI---- 63 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI--GS 142 V D AL +LA R + ++A+TGS GKTT KEM+ L S++ G+ Sbjct: 64 -VKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDVLFTQGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H+GEI + T L +P +A++ + AHL F Sbjct: 123 FNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGS 182 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261 I+ +A+AK EIF GL K G +N ++ + +A +G + F + ADF Sbjct: 183 IDGVATAKGEIFRGLTKNGVAIINLAHNYQQKWQAD---IGRHAVQYFAYDNPRADFYAE 239 Query: 262 KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKA 316 + SEQ S++ QG+ +++ +G H N L + V TA V ++ Sbjct: 240 QI-HFSEQGASFLLHTPQGR-VQINSPYLGEHNISNALAATALSMNVGATTAQVKKGLET 297 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 S+ +G+ + + L+D++YNAN SMK+AISVL + R+ V+G Sbjct: 298 PSLV-----KGRLFPIQPCENLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVG 347 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ +Q H ++ E + V G + +E + L Sbjct: 348 DMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAVNSGRHFTDKTELVTYLTPI 407 Query: 437 IQSSLVDGDVVV-VKSSNSCGFYRLINLLLEEF 468 IQ L VVV VK S S +I+LL F Sbjct: 408 IQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 440 >gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 452 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 109/382 (28%), Positives = 200/382 (52%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +SI+S + Q+A F + DGH+FI A+ GA + +V+ ++IP Sbjct: 23 IQTVSINSNEVN-QDALFVAIVANRDGHEFIPSAIANGAKAL-----LVSKKQDINIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 ++ + L LA R K II++TGS GKTT KEM+ L KK + G++NN+ Sbjct: 77 VCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGG-KKVHFTQGNFNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G S GEI+ +++P++A+IT + +HL N ++ + Sbjct: 136 LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L K G +N DD E + A + L K I +++AD + ++ Sbjct: 196 MIEKGELLKALPKDGVCIVNLDD---ERIPAYADKLDCKKITCSMSNQDADIIILDYQVT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E +++++ K IG H N + L I S++ A ++ + + K + Sbjct: 253 PELYDVKIRIFNKEYSYQLPNIGKHNLSNSM--LAIASVVAAGLEPNDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI+ L++ +G+++ + M E+G+ + Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIADLAEF----DGKKVIAITSMRELGDEGE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L+ + +++L G Sbjct: 366 NYHRKMGQWLNKAGLDNIFLFG 387 >gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] Length = 457 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 36/392 (9%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I + N + DSR + + F +KG DGHDFI A + G Sbjct: 8 TLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV V SL +P V+D L AL +LA ++ +IA+TGS GKTTTK+ Sbjct: 67 C---VVTLSEV----SLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKD 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P Sbjct: 120 MIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++VIT AHL F EEIA K +I +G+E + + D +LL SH I Sbjct: 180 SLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL--PSHVDLI 237 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM------ 298 + FG + AD Q+ + + V ++ G + A N ++ Sbjct: 238 R----FG--EQADLQVTSLVESKDSLTFTVNFMDG--DIFLPVTGKYNATNAMVASYVGK 289 Query: 299 TLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 TLG+ D AIK AL+ + R ++ A N ++ + YNANP +M+ + Sbjct: 290 TLGV-------PDEAIKSALASLNLTRNR-TEWKKAANGA--DILSDVYNANPTAMRLIL 339 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + I + G++IAVL DM E+G S H Sbjct: 340 ETFTSIPANEGGKKIAVLADMKELGSQSVDLH 371 >gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter cryohalolentis K5] gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 482 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 210/453 (46%), Gaps = 36/453 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R+I P + F A+ G ++DGHD++ A+ +GA +V +A+ + SIP V Sbjct: 51 IATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIV-ARPIATADANSIPQLVVS 109 Query: 90 DVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D AL +LA R + + T+IAITGS GKTT KEML + T G+ NN +G Sbjct: 110 DTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNNDLG 169 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP+ L + + I ELG +H+GEI + T +V+P +A I I AHL F E I Sbjct: 170 VPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGICQ 229 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELL-----KAKSHALGIKTIYSFGKSKNADFQLRKW 263 KAEI+ L + + D F L K SH +G FG + D Sbjct: 230 TKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG------FGST---DVSASHL 280 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E+S ++ + + ++ G H N L L +V + L P Sbjct: 281 DVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIEVSDIVVGLENARPA 340 Query: 324 EGRGKRYRCALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +GR LN G LID++YNANP S++AA VL+ + G ++ VLGD+ E Sbjct: 341 KGR-------LNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQT----GTQVMVLGDIAE 389 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFL--- 435 +GE + S H L ++ I+ + G + + I+ + D L Sbjct: 390 LGEAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVEGAQEISDINAYAFTDKDSLLAYLK 449 Query: 436 -FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++Q+ V+ K S S LIN L+EE Sbjct: 450 PYLQAQQAQPCTVLFKGSRSMEMETLINALVEE 482 >gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 218/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLILAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 456 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 183/384 (47%), Gaps = 23/384 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q F N IS+DSR+I +E F AIKG ++DGH+F+ ++KG VV+ M ++ Sbjct: 26 QSFKN-ISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVIKEGM-QNLLPYKF 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P + V D L A KLA+ R + ++ ITGSVGKTTTKEM+ L + K ++ Sbjct: 84 PFWTVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQLNF 143 Query: 144 NNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 NN IGV LT+ +D DF I E+GM LG+I L+ P IAVIT I +H+ Sbjct: 144 NNEIGVGLTI----LDSDFKDKTLILEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGI 199 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADF 258 E I AK EI + L G + + +D F E LK + IK K Sbjct: 200 LGSKENITYAKCEITKHLNPKGVVIIPANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSL 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + +S V ++ K E+ G+H A N L + L K Sbjct: 260 NKTNLQGFYNRSNNSVIIEDKIFEISFQ--GFHNAFNFLFVYAVAKELGIKFKDTNKF-- 315 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F GR K L T+ DE+YNA+P S+KA I+ L +P+ + G M Sbjct: 316 NFVSLNGRNK----ILKSKKTTIYDETYNASPESVKACINNLLD-NPNN---HFLIFGSM 367 Query: 379 CEMGELSQSFHIDLAEVLSLYNIS 402 E+G SQ +H DL E++ +I Sbjct: 368 QELGNKSQKYHKDLFELIDRSDIK 391 >gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC 27064] gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 479 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 207/452 (45%), Gaps = 31/452 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P F A G DGHDF AV GA + V+ T V +P VD Sbjct: 31 VVTDSRRVGPGSLFTAFAGERADGHDFAERAVADGA-VAVLATRPVG------VPAIVVD 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV AL LA R T +A+TGS GKT+TK+++ L T G+ NN IG+ Sbjct: 84 DVTAALGALARHVVERLGTTTVALTGSAGKTSTKDLIAQLLERKGPTVYPEGNLNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT R + + E+G ++G+IR+LT LV P I ++ + AHL F E IA A Sbjct: 144 PLTALRADESTEHLVLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGEFGSRERIAEA 203 Query: 210 KAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ E L E+ G LN DD + ++ A + FG+ +AD + + Sbjct: 204 KGEMVESLPSGEEGGVAVLNADDPLVRAMAERTRA----RVVLFGEHSSADIRAANVRLT 259 Query: 267 SE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + +V G H N L + L D ALS + G Sbjct: 260 RQGRPAFTLHTPTGCSDVTMRLYGEHHVSNALAAAAVAHELGLSADEIALALS----EAG 315 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAISVLSQISPHGEGRRIAVLGDMCE 380 R+R + + T+++++YNANP S A++ + Q + GR AVLG M E Sbjct: 316 TLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAMGQGAQSRGGRTWAVLGLMAE 375 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLF 434 +G+ + + H + + N+S + G + A + VH S+ + Sbjct: 376 LGDEALAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVD 435 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L ++S L GDVV+VK+S S G R+ LL+ Sbjct: 436 L-LRSELRPGDVVLVKASRSVGLERVAQALLD 466 >gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] Length = 464 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 125/401 (31%), Positives = 198/401 (49%), Gaps = 32/401 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q ++G +G + IS D+R + FF +KG +D HD++ A+++G Sbjct: 5 TTQQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIEQGC 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +VV ++ ++++P V+D AL +LA + +A+TGS GKTT KEM Sbjct: 64 VALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEM 118 Query: 126 LTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 L +K AC G+ NN +GVPLTL R+ + F + ELG +H+GEI + Sbjct: 119 TAKIL---QKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFTVVELGANHIGEIAYT 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 176 TEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK-- 233 Query: 239 SHALGIKTIYSF---GKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +G + SF G+ K++ DF + S + +E+ +G H Sbjct: 234 --EIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNV 291 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + AD+ TA+KA + +G+ Y + + ID+SYNAN SM Sbjct: 292 SNALAATALAMAVGADL-TAVKA-GLEQRSAVKGRLYPIEIKENVL-FIDDSYNANVDSM 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 K+A+SVL Q RI V GDM E+G+ S + H ++A+ Sbjct: 349 KSAVSVLKQYPAF----RIFVAGDMAELGKDSPACHQEVAD 385 >gi|163854998|ref|YP_001629296.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella petrii DSM 12804] gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bordetella petrii] Length = 943 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 178/382 (46%), Gaps = 17/382 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+RSI E F A+ G +DGH ++ A GA +V + S+P + Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIV----AHPVDGASLPQLVLG 561 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146 D AL ++ A R R +I + GS GKTTTKEM+ L+ + A G++NN Sbjct: 562 DTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGNFNND 621 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + ELGM+H GEI L L P +A++T H +E + Sbjct: 622 IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALVTNAQREHQEFMHSVEAV 681 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A E L + G DD + +A++ G + + FG D + Sbjct: 682 AQENGASIEALPEDGVAVFPGDDPHCGIWEAQA---GARRVLRFGLQPGLDVYAEQIDAT 738 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + V S ++V G H +N L + A + A++ALS F GR Sbjct: 739 PHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGAVRALSAFSAVAGR 798 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R L+ G LID++YNANP S++AA+ VL+++ R VLGDM E+G+ Sbjct: 799 MQRQ--TLDDGTI-LIDDTYNANPDSVRAAVDVLARLP----APRALVLGDMGEVGDNGP 851 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 + H ++ E + I ++ G Sbjct: 852 AMHREVGEYARQHGIDTLYTLG 873 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR +A + F A G DG FI A+ +GA V+ + + V V Sbjct: 28 LRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPAPGDVAT-DARVRAVP 86 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ L +LA R + +++A+TG+ GKT+ + + L+ K IG+ + Sbjct: 87 DLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGTLGAML 146 Query: 148 GVPLTLARMPVDVDF---------------GIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 TL D L S +G + VR +A T + Sbjct: 147 PDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAGFTNL 206 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL +E AKA +F+ +N DD+ E L ++ G+ Y+ Sbjct: 207 TRDHLDYHGSMERYEQAKARLFQ-WPGLAAAVINADDAAGERLL-RTLPRGLALGYTQQD 264 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 A FQ R+ + + + +VV +G H N+L+ G++ L + Sbjct: 265 VPTA-FQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGWPLAQ 323 Query: 313 AIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +AL+ P GR + R A +G ++D Y+ P S+ A++ L ++ Sbjct: 324 LARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVD--YSHTPDSLARALAALRPVAD 381 Query: 366 HGEGRRIAVLG 376 GR + + G Sbjct: 382 ARGGRLVCLFG 392 >gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora tropica CNB-440] gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinispora tropica CNB-440] Length = 471 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 133/466 (28%), Positives = 214/466 (45%), Gaps = 35/466 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL + ++ A+ G + P V G + DSR + P F A G DGHD+ Sbjct: 1 MIPL-SLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A++ GA + V+ T +VA + P+ VDD AL +LA A R T++ +TGS G Sbjct: 60 AIRAGA-VAVLGTRVVAGV-----PMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ + + T A GS+NN +G P T + + + + E G +G + +L Sbjct: 114 KTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPETRYLVLEKGARGVGHVSYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AH+ F E IA AK E+ L G LN DD + + Sbjct: 174 CEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPAEGLAVLNADDDLVAAMATR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 + A + +G++ AD + + S+ V +G++ V G+ G H N Sbjct: 234 TRA----RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAP--VRLGLTGRHQVSN 287 Query: 296 MLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + L ++ TA+ L + +R T+ID+SYNANPAS Sbjct: 288 SLAAAAVARELGMPVTELATALGELGLVS-----SRRMDVFERVDGVTVIDDSYNANPAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+ L+ R IAVLG M E+G Q H+++ + + + + + G Sbjct: 343 MAAALRALAGFRRR---RTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVVGEAAA 399 Query: 413 ALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSN 453 + + S+ E++ G ++ L GDVV+VK S Sbjct: 400 PIHEGA-TSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLVKGSR 444 >gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 451 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 213/446 (47%), Gaps = 32/446 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI D+R I P E F A +G +DGH+F+ A+ GA +V+ D + PV Sbjct: 31 SGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIANGAIAAIVDDDYE----NPGFPVLQ 86 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + L A KL R R +I +TGSVGKTTTKE++ L + + G++NN I Sbjct: 87 VSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTTTKELIAAVLGTKGNIHKTYGNFNNEI 146 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVP TL + + D+ + E+ M G+I LT + P I VIT + AH+ E IA Sbjct: 147 GVPKTLLELNAEHDYAVIEMAMRGRGQIAELTQIANPTIGVITNVGTAHIELLGSEEAIA 206 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E+ + K LN+D+ LL A + + ++G S D Q Sbjct: 207 EAKCELLAEMPKDSVAILNHDNP---LLMATAGKFWSGEVLTYGLS-GGDIQ----GSLV 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + +EV + + G H A N L L + +L + + +SV P GR Sbjct: 259 DNAIVEV----AGLRLPLPLPGRHNATNYLAALAVAKVLGIEWSSLQAGVSVNMPT-GRS 313 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +R+ + ++DE+YNA P +M AA+ +L+ R+IAVLG M E+GE S Sbjct: 314 QRFSLPND---VLILDETYNAAPEAMLAALQLLADTPGK---RKIAVLGAMKELGERSAQ 367 Query: 388 FHIDLAEVLSLYNISH--VWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLV 442 H + E + + V + G A+ + +P +++ + L F+Q Sbjct: 368 LHQRVGETVRNLKLDGLLVLVDGEDAEAIAKSAEGIPSECFATHADLVARLTTFVQG--- 424 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468 GD V+ K+++S G R+++ L EF Sbjct: 425 -GDRVLFKAAHSVGLDRVVSQLRAEF 449 >gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 453 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 127/467 (27%), Positives = 229/467 (49%), Gaps = 34/467 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ GA Sbjct: 4 TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63 Query: 66 GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 + +++ ++ + L+ V V+D AL LA R + ++ ITGS GKT+TK Sbjct: 64 TVAIID-EVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI LT++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + ++ T+ +NY++ + + + H Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVN-EDHEFK 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I+ I G K D + E S+ V G+ + +G H N L+ + I Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SMK+A+SVL Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAE-VLSLYNISHVWLSGFHVLAL 414 S R+IAVLGDM E+G+ ++S H I A+ +L+ + SGF Sbjct: 355 YSG---SRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKSGFG---- 407 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ + E + ++ + + DGDV++VK+S S F ++ Sbjct: 408 ----KGAVSFNCKEDLQN---YLCNLIKDGDVILVKASRSAKFEDIV 447 >gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] Length = 464 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 193/396 (48%), Gaps = 41/396 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG H+D H ++ +AV++G VVV + +S+P Sbjct: 24 MVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVEQGCVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM-------LTIALSSIKKTYA 138 V D AL +LA + + +A+TGS GKTT KEM +T+ + T+ Sbjct: 79 IVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTVCEDEVLYTF- 137 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 138 --GNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYTGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 F W + +E+ L G +E+ +G H N L + + A Sbjct: 256 F----WAEN-----VELDLSGSHFTLHSPQGEIEINLPYLGAHNVSNALAATSLAMAVGA 306 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D++ AIK + + + +G+ Y +NQ LID++YNAN SMK+A++VL Sbjct: 307 DLN-AIK-VGLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF-- 361 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 RI +GDM E+G+ S + H +A+ + N+ V Sbjct: 362 --RIFAVGDMAELGDESAACHQQVADFVREANLDLV 395 >gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] Length = 457 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 207/450 (46%), Gaps = 36/450 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++IDSR + F AIKG DGHDFI ++ GA + D+ G + Sbjct: 28 VSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVMENGALCALSEKDL----GDVPYSYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL LA RL ++ ITGSVGKT+TKEM+ L G++NN Sbjct: 84 LVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTSTKEMIASVLEQKYSVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G++ E+ L + RP I VIT I HL N + + Sbjct: 144 IGLPLTIFNIREEHEVAVLEMGINEFEEMHRLAKVARPDICVITNIGFCHLENLIDRDGV 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+F+ + I LN DD + L + GI ++ FG ++ D+ Sbjct: 204 LRAKTEMFDFMRDGAQIILNGDD---DKLITVQNVKGIIPVF-FGLTERHDYYATDVHSL 259 Query: 267 S-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + L ++ H G HM N L + L + K + P G Sbjct: 260 GLKGTSCILHLPNGTVNANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSG 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + F +ID+ YNANP SMKA++ VLS + GR++A+LGDM E+GE Sbjct: 320 RNN----LIETDDFLIIDDCYNANPVSMKASLDVLS----NALGRKVAILGDMGELGEDE 371 Query: 386 QSFH-----------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 ++ H DL + + ++ +++G + + K Y T + Sbjct: 372 KALHYGVGVYAAKKETDL--ICCIGTLAQEFVNGANSVTSKS------ETLYFATKEEFL 423 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + S + GD ++VK+S+S F ++ L Sbjct: 424 SQMHSIVKKGDTILVKASHSMEFPEIVEAL 453 >gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus rhamnosus GG] Length = 463 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + P F ++G DGH+FI A GA V D + L P Sbjct: 28 TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 84 Query: 88 VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ KLA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 85 VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F +I Sbjct: 145 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ-----L 260 A AK EI +GL++ GT N D+ LL +++ + ++ +FG +N F Sbjct: 205 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 260 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R + + + W E+ M G + N L L + + KAL F Sbjct: 261 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALVHF 313 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + + ++ + YNANP +MKA I S+ GR IAVLGDM E Sbjct: 314 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 368 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435 +GE S++ H LA+ L + I V+L G + AL +AL P+ +H + + + Sbjct: 369 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 428 Query: 436 FIQSSLVDGDVVVVKSSN 453 +Q+ + D+V++K+S+ Sbjct: 429 DLQNDVGHDDMVLLKASH 446 >gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] Length = 477 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 34/449 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ISIDSR I +E F AIKG ++DGH+FI +A+++GA ++ + +L VFG D Sbjct: 46 ISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIVFGTD 105 Query: 90 -------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + A++ +A R R + +I ITGSVGKTTTKE+L L + T + G+ Sbjct: 106 FSFIKVPNTILAMHDIARGFRQRIEK-VIGITGSVGKTTTKEILKTLLKGYQ-TVSTFGN 163 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IG+PL+L R + FGIFE+ M GEI L + P I +IT IA +H+ Sbjct: 164 FNNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPDIGIITRIAESHIGLLGS 223 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNAD 257 +E IA AK EI L+ + FLN++ F E+LK K K + FGK +D Sbjct: 224 MENIARAKGEI---LDFVDSAFLNFNCKYSRKIFGEMLKDKKGKP--KEVIWFGKE--SD 276 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIK 315 ++ + S +E L G+ V + Q +L ++ + L D + Sbjct: 277 LYIKSHEIFIHGSRLE--LSGRFGNFVLRAPNIFLPQFEPLLASVAVARFLGLDWNEIND 334 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L +HP +GR + G +ID+SYNA S + + + G R+I V Sbjct: 335 NLQGYHPLQGRFLIKKL----GDQIVIDDSYNATCTSFLKGLETIKSLK-FGNRRKIFVF 389 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-MDGLF 434 GD+ E G+ S+ H + + + + V+ G + ++ R+ + + +D + Sbjct: 390 GDILEAGDKSRDLHKKVIKKIEELDPFLVYFVGTEFVK---SVGRNSKLRFKNLGIDEVK 446 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + L D+V +K SNS ++++ L Sbjct: 447 EDLAKILSKEDLVYIKGSNSTKTWKVLEL 475 >gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 459 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 208/448 (46%), Gaps = 21/448 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR + FFA+KG ++D H ++ A ++G VV +I L Sbjct: 25 VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEGNIARLI---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI--GS 142 V D AL +LA R + ++A+TGS GKTT KEM+ L S++ G+ Sbjct: 81 -VKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDVLFTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H+GEI + T L +P +A++ + AHL F Sbjct: 140 FNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261 ++ +A+AK EIF GL + G +N ++ + +A +G + F + ADF Sbjct: 200 LDGVATAKGEIFRGLTENGVAIINLAHNYQQKWQAD---IGRHAVQYFAYDNPRADFYAE 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + ++ + +++ +G H N L + + A K L Sbjct: 257 QIHFSEQGAYFLLHTPQGRVQINSPYLGEHNISNALAATALAMNVGATTAQVKKGLET-- 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P +G+ + + L+D++YNAN SMK+AISVL + R+ V+GDM E+ Sbjct: 315 PSLVKGRLFPIQPCENLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVGDMGEL 369 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ +Q H ++ E + V G + +E + L IQ L Sbjct: 370 GDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAVNSGRHFTDKTELVTYLTPIIQQQL 429 Query: 442 VDGDVVV-VKSSNSCGFYRLINLLLEEF 468 VVV VK S S +I+LL F Sbjct: 430 AQQKVVVLVKGSRSMKMEEVIDLLKGNF 457 >gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016] gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 474 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 197/391 (50%), Gaps = 23/391 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +F D+++A+ G ++ +G G IS DSR + + F A+KG ++G++++ A + Sbjct: 16 SFDDIVRAVSGK---VILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASK 72 Query: 63 KGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA + +V+ S S + V + AL +LA R + II +TGSVGKTT Sbjct: 73 KGASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTT 132 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+++ L K + G++NN IG+P L ++ + + E+GM+ GEI + Sbjct: 133 TKDIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKA 192 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP IAVIT + AH+ N + I +AK EI + K T+ +N D+ L+ K+ Sbjct: 193 ARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNF- 251 Query: 242 LGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 T+ G +N+D + + + C E + ++ + +++ Y++ N L+ Sbjct: 252 ----TLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIV-NSLL 306 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +L D + + R + R + FT+I++ YNANP SMKAAI Sbjct: 307 AISCGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAID 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 VL + + R+IAVLG M E+GE + H Sbjct: 363 VLKEFKSN---RKIAVLGTMGELGEEAYKMH 390 >gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 458 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 195/404 (48%), Gaps = 30/404 (7%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A+ G IG Q ++ + D+R + F A+KG +D HDF AV KGAG ++V+ Sbjct: 12 AVNGQLIGADTQ--ISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSK 69 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + + P V D AL L R + A IIA+TGS GKT+ KEM L Sbjct: 70 RL-----PIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQ 124 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 G++NN IGVPLTL R+ + +F + ELG +H+GEI + +LV+P A++ + Sbjct: 125 CGNVLYTAGNFNNDIGVPLTLLRLEPEHEFAVVELGANHVGEIAYTVNLVKPESALVNNL 184 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG 251 A AHL F + +A AK EIF+GL GT +N D + + + K +H + ++ F Sbjct: 185 AAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKITH----QRVWRFS 240 Query: 252 K--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 ++ DF + + + E+ ++ V+ G H N L + + A Sbjct: 241 PQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMSVGAT 300 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ + LS GR R Q ++D++YNAN SM AA VL + G Sbjct: 301 LENVRQGLSELKAVPGRLFPIRLNAQQ---LILDDTYNANVGSMTAAAQVLGSMP----G 353 Query: 370 RRIAVLGDMCEMGELSQSFHIDLA---------EVLSLYNISHV 404 R+ V+GDM E+G + H + +VLS+ +SH+ Sbjct: 354 YRVMVVGDMGELGTEEEDCHRQVGIAAREAGIDKVLSVGRLSHL 397 >gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 218/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q+ + ++ +A + + G Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555] gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555] Length = 463 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/392 (29%), Positives = 197/392 (50%), Gaps = 23/392 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +F D+++A+ G ++ +G G IS DSR + + F A+KG ++G++++ A Sbjct: 4 MSFDDIVRAVSGK---VILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESAS 60 Query: 62 QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA + +V+ S S + V + AL +LA R + II +TGSVGKT Sbjct: 61 KKGASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+++ L K + G++NN IG+P L ++ + + E+GM+ GEI + Sbjct: 121 TTKDIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVK 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RP IAVIT + AH+ N + I +AK EI + K T+ +N D+ L+ K+ Sbjct: 181 AARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNF 240 Query: 241 ALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 T+ G +N+D + + + C E + ++ + +++ Y++ N L Sbjct: 241 -----TLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIV-NSL 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + +L D + + R + R + FT+I++ YNANP SMKAAI Sbjct: 295 LAISCGRLLNMSYDEIREGVKNIKLTSMRMEIIR----KKEFTIINDCYNANPESMKAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 VL + + R+IAVLG M E+GE + H Sbjct: 351 DVLKEFKSN---RKIAVLGTMGELGEEAYKMH 379 >gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/446 (28%), Positives = 209/446 (46%), Gaps = 23/446 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I P + F G DGH+F+ A + GA ++ PV Sbjct: 26 ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA+ + +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 84 LVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ +EI Sbjct: 144 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQ 265 A AK EI GL +G + Y+++ S G +FGKS ++ + L + Sbjct: 204 AKAKLEITAGLNPSGILIYPYEETLL-----LSQIDGDFRQLTFGKSTESEIYPLEIHAE 258 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHP 322 S+ V +E+ IG H N + + + I + TA+K + Sbjct: 259 AEGTSF--VTNWEPDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNM----- 311 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R + +++++YN++P +++ + + G+ + + VL DM E+G Sbjct: 312 -ERSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGKPKYL-VLADMLELG 369 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439 ELS H + AEVL I V+L G + A I V + +T + L + Sbjct: 370 ELSVLLHQESAEVLEEGTIEKVFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLK 429 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 430 EITGNEWILVKGSYGMGLKDVVENLI 455 >gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV104] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 220/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E L + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLEQVL---DLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 214/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKELA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+I KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTIYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F +IA K +I +G+ + ++ L D E S+ Sbjct: 177 KTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGM-SSNSLLLAPADPIVE-----SYLPAD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIR--QAFQDLELTRNRTEWKKAANGADVLSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS I V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVIDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 222/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V ++ VA+ P VDDVL A L+ ++ + A+TGS GKTTTK+ Sbjct: 63 AA-VTLSEKKVANH-----PYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSITYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G++ +G++ L D+ E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMD-SGSLLLAPADTIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455 >gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 181/386 (46%), Gaps = 19/386 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVF 86 +GIS DSR+ F A++G +D H F+ G V +V + + IP Sbjct: 24 DGISTDSRTAPAGSLFVALRGEKFDAHKFM-----DGLAARGVAAVVVERVPKGMEIPAL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIGSY 143 V D AL +A R + +I +TGS GKTT KEML L + A G++ Sbjct: 79 IVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHFLATRGNF 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLT+ R+ + ELGM+H GEI L+ + +P + ++ H + Sbjct: 139 NNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTLGLVNNAQREHQEFMVSV 198 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A + L G DD + L + + A+G + + +FG S +AD W Sbjct: 199 EAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAIGQRKVMTFGFSDDADVSC-SW 257 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K S ++V+ ++ V G H +N L + + +D ++ L+ F P Sbjct: 258 KADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGIGIGIDAIVRGLAAFAPV 317 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMG 382 GR +R A +ID++YNANP S++AAI VL+Q SP R+ VLGDM E+G Sbjct: 318 NGRLQRKHAASGA---QVIDDTYNANPDSVRAAIEVLAQAPSP-----RVLVLGDMGEVG 369 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 + +H ++ I H++ G Sbjct: 370 NDGRQYHEEVGAYARGRGIQHLFTLG 395 >gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 217/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALYLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus GG] gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus GG] Length = 462 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + P F ++G DGH+FI A GA V D + L P Sbjct: 27 TGVAFDSRRLKPGMLFVPLRG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83 Query: 88 VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ KLA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F +I Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQ-----L 260 A AK EI +GL++ GT N D+ LL +++ + ++ +FG +N F Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R + + + W E+ M G + N L L + + KAL F Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALVHF 312 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + + ++ + YNANP +MKA I S+ GR IAVLGDM E Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEF--QTAGRHIAVLGDMLE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435 +GE S++ H LA+ L + I V+L G + AL +AL P+ +H + + + Sbjct: 368 LGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427 Query: 436 FIQSSLVDGDVVVVKSSN 453 +Q+ + D+V++K+S+ Sbjct: 428 DLQNDVGHDDMVLLKASH 445 >gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 218/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLMPADPIVE-----DYLQTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] Length = 455 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 183/354 (51%), Gaps = 16/354 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ I D+R++A + F A+ G +DGH+F+ A GA +VV+ + +++ P Sbjct: 23 MVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEASGAAALVVSRPVDSAL-----PQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D L AL ++ R +AITGSVGKT+ KEM + + T A G+ NN Sbjct: 78 ILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKTSVKEMTAAIFAQVGPTLATRGNLNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP+TL + + F + ELG +H GEIR+ + L PH AVI I AHL F GIE Sbjct: 138 TIGVPMTLLELTPEHRFAVIELGANHAGEIRYTSSLALPHAAVINNIRGAHLEGFGGIEG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A AK+EI+E L + GT +N DD + L + LG + +++ AD + Sbjct: 198 VARAKSEIYEHLGEAGTAIVNLDDEWAPWLLER---LGDQNRFTYSSRGPADLWASALSR 254 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + +G++ +V + G H N L + S TA++ A + Sbjct: 255 DADGCYHFLLHRGEAEVLVRLPLPGRHQVDNALAAAALAS--TAELSLEQIASGLAQAPT 312 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 G+ AL+ G LID+SYNAN AS AAI ++++ +G + V GDM Sbjct: 313 VAGRTQMTALS-GEVMLIDDSYNANAASTMAAIDLMAER----DGSSLLVFGDM 361 >gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11] Length = 607 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 200/403 (49%), Gaps = 36/403 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI +G+ ++ + KGA LV+ + + V Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTNIKDK-----RVV 249 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YNNH Sbjct: 250 KVTDTIATMQNLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 309 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + + Sbjct: 310 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 369 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ E ++K T F+ DD + LG + G ++N D+++ ++ Sbjct: 370 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIENYEFS 418 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323 ++ S + L GK E+ +G H N + + + + + ++ +K + + + Sbjct: 419 NKGS--KFVLDGKEYEMSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM- 473 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 474 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 525 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 ++HID+ L I ++L G + D ++ Y Sbjct: 526 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568 >gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] Length = 457 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 217/456 (47%), Gaps = 50/456 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I F A+KG +D HDF V+ GA ++V ++ + P V Sbjct: 33 VSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVEREL-----DVDCPQVIVA 87 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + ++ +LA R +S+A ++ +TGS GKT+ KEM LS KT G+ NN IGV Sbjct: 88 NTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGNLNNDIGV 147 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D+ + E+G +H EI + T++V+P A++ + AHL+ F E +A A Sbjct: 148 PLTLFRLTHEYDYAVIEMGANHPNEIAYTTNIVKPESALVNNLFAAHLAGFGSPEGVARA 207 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLR--KWKQ 265 K EI++GL GT +N DS+ + + +T+ YS ADF + KQ Sbjct: 208 KGEIYQGLPDEGTAIVNL-DSYSPHWQFQPR----QTVWYYSLKPQDKADFYPSDIEVKQ 262 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + + ++ + G+ H N+L + + A ++ L+ K Sbjct: 263 LSTNFTLHTPVGQIAITLPLPGM--HNIANVLAASALAISVGATLEDIRNGLATT--KAV 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G+ Y L+ L D++YNAN SM AAI+VL+++ G RI + GDM E+G+ + Sbjct: 319 PGRLYPVQLSPTKVVL-DDTYNANDGSMIAAINVLAKMP----GYRILIAGDMGELGDYA 373 Query: 386 QSFH---------IDLAEVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 Q H L +VLS+ IS G H KD L R I Sbjct: 374 QDCHQRVGIAAKDAGLDKVLSVGTLSEMISQFSECGEHFAFKKDLLTRLIP--------- 424 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L Q+ +V ++VK S S ++N L E F Sbjct: 425 --LVQQNEVVS---ILVKGSRSSAMEDVVNALKECF 455 >gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio ammonificans HB-1] gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio ammonificans HB-1] Length = 432 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 205/461 (44%), Gaps = 37/461 (8%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + ++G +G G G+ DSR IA E F +KG DGH FI A +GA + Sbjct: 6 LAEIVKGELVG---SGRFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRGAAGTL 61 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + G + V D L A +LA R + K T+I +TGSVGKTTTKE+L Sbjct: 62 TERRVELPPGKFQVVV---RDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKELLGKL 118 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L + Y S+NN +GV TL+ +P F + ELG + GEI LT V+PH+AV+ Sbjct: 119 LG--RNCYTSKKSFNNLLGVCYTLSNLPESARFLVQELGTNSPGEIARLTKTVKPHVAVV 176 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TT+ AH F +E I K I EG E + + LK A T+ Sbjct: 177 TTVGKAHTQGFKTLEAIKKEKLSITEGAE-VAVVPVE--------LKEMCRADKCLTV-- 225 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + +++ W ++ ++ + +++ GY + + + L Sbjct: 226 ---GRGGTVEVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVALELGIP 282 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + +K + F P ++RC++ + TLID+ YNANP SM+ A+ VL+ + Sbjct: 283 LRELVKVVREFSPP-----KHRCSVERLPNGTLIDDCYNANPVSMENAVRVLASFN---- 333 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYS 427 G ++AVLG+M E+GE H L E+L+ I + G +K + H Sbjct: 334 GPKVAVLGEMLELGEEGPKEHRKLGELLNALGIEELIAFGAQTEETVKTFKGKGFHFTNR 393 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 E FI G V+VK S + L+ E Sbjct: 394 EE---FIKFISEFPFRGKTVLVKGSRGNRLEEAVELIRERL 431 >gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] Length = 457 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/434 (30%), Positives = 209/434 (48%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ AV +GA +VV + S+ +P Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQQEN----SSILVPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE + H ++ + ++L N+ V G + +A+ E +D L Sbjct: 361 ADMKELGENFLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVSGKHFTDKVEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIETQLQQNKKVVV 434 >gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 456 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 200/454 (44%), Gaps = 38/454 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q V + DSR F I G D H FI ++ GA + T + + Sbjct: 25 QEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIPQVMEAGA----LATLSERVLDNADF 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V+ L A+ +A + + ++ ITGSVGKT+TKE++ L+ T G++ Sbjct: 81 PYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVGKTSTKEVIASVLNQKYHTLKTQGNF 140 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+PLT+ R+ + + E+G+S GE+ L + RP VIT I HL N Sbjct: 141 NNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDR 200 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + AK EIF+ L G I LN DD + T+ + K K F + Sbjct: 201 NGVLKAKTEIFKFLRPEGHIVLNGDDD------------KLITVKEYEKIKPVFFGMSNE 248 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTA 313 Q + L+G + +H G G HM N L + +I D Sbjct: 249 CQVYGDKIVSRGLKGMTC-TIHLGDTAFTVDIPMPGRHMVYNALAAAAVGNIYGLTTDQI 307 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + P G R+R + F ++D+ YNANP SMKA++ VL G GR+IA Sbjct: 308 KAGIESLEPISG---RFR-MIETDKFLIVDDCYNANPMSMKASLDVLQD----GAGRKIA 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM 430 VLGDM E+GE H ++ E +I + +G + + R+ + V Y Sbjct: 360 VLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGKLCRNMAERAQRTNPDLKVIYEPDR 419 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L ++ + DGD ++VK+S+ F ++ L Sbjct: 420 ESLLEHLEGYVQDGDTILVKASHFMKFEEVVTKL 453 >gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] Length = 463 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 134/471 (28%), Positives = 210/471 (44%), Gaps = 22/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T D+L A++G +G ++ + DSR+I F + G +DGH +I Sbjct: 1 MEPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYIT 59 Query: 59 HAVQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A++ GA D + + G I VD AL LAV + + ++A+TGSV Sbjct: 60 SALEGGAAACFTQRDRESYLPGKCYI---RVDHTQRALRDLAVWYKKKFDIPVVAVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK+M+ L K G+ N IG TL R+ + E+GM+H GEI Sbjct: 117 GKTTTKDMVAAVLGEHYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNHPGEIEV 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 ++ + +P + +IT I +H+ + E I AK EIF + LN DD L+ Sbjct: 177 MSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPLLRTLEG 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K + I G + D+ + EV+ S +V +G HM Sbjct: 237 KLP----EPILWCGGAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQVEIPALGSHMIYPT 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKA 355 LM + + + + F P + R + +G T+++++YNANP SM+A Sbjct: 293 LMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMN----IIQRGEDITILNDTYNANPQSMRA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ VLS+ GR+IAVLGDM E+G L+ + H + L I + G + Sbjct: 349 AVEVLSKTH---SGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGELAKNIY 405 Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 DA ++ VHY T + + + ++VK+S F L L Sbjct: 406 DAAREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGMAFEDLTEYL 456 >gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 462 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/395 (29%), Positives = 186/395 (47%), Gaps = 28/395 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85 VN + DSR P + FF ++G DGH F A +GA +V + D+ GS+ + PV Sbjct: 26 VNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDL----GSIQNTPV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG---- 141 VDD L AL +L RL++ ++ ITGS GKTTTKE+L + + KT +G Sbjct: 82 LAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEIL----AEVLKTRFTVGKNHK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN +G+PL+L D DF I ELG+++ ++ L ++ P A+I + P HL Sbjct: 138 NWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEILLPDAALILNVGPCHLEGLG 197 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A AKA + + L F+N D + +L + + T + + AD ++ Sbjct: 198 DVSGVARAKARLLDYLRAEHRAFINLD--YPDLKREAGARPDLNTTWFSSRDPEADCRVS 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S + + L + + G H +N+ + D L Sbjct: 256 H----SRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVALEYGMQPDEIQAGLEKSS 311 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 E R C G +T+ID+SYNANP SM+AA+ ++ G+ + VLGDM E+ Sbjct: 312 LPEQR----MCISRSGDWTIIDDSYNANPMSMQAALETARSLASGGD--LVLVLGDMAEL 365 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG---FHVLA 413 G H DL L + ++ +G HVL+ Sbjct: 366 GRDEARAHRDLGRSLCAGAFTALFYNGDNLEHVLS 400 >gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] Length = 457 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 139/453 (30%), Positives = 205/453 (45%), Gaps = 41/453 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ IDSR + F AI G + + H FI ++KGA V+ + D+ G Sbjct: 28 VGGVVIDSRKVQKDYLFVAIDGENVNAHQFIPDTIEKGALCVISHEDL----GDTDFSYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ AL +A R ++ ITGSVGKT+TKEM+ ++ K + IG++NN Sbjct: 84 LVESTGQALLDIAKLYRDSFDVKVVGITGSVGKTSTKEMIASVVAQKYKVHKTIGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 G+PLT+ + D I E+G++H GE+R L+ + P I VIT I AHL F E I Sbjct: 144 WGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFKTREGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWK 264 K+++ + ++ GTI N DD S A IK T FG N F + Sbjct: 204 LQEKSKMIQDMKDGGTIIFNGDDDLL------SQAGPIKGATPILFGLGDNCQFYADNIQ 257 Query: 265 QCS-EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSV 319 + + L + S E V G HM N L + + + + ++ I+ L Sbjct: 258 PMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLPS 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + K R ++D+ YNANP SMKAAI VL GR++AVLG+M Sbjct: 318 IPGRNNIIKTDR-------LIILDDCYNANPVSMKAAIDVLDMAI----GRKVAVLGNMG 366 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL------ 433 E+G + H ++ E + + I V G L D S + GL Sbjct: 367 ELGNNEKVLHREVGEYAAAHGIDLVCGIGHLAKELVDGATNG-----SSSTRGLWFENKA 421 Query: 434 -FLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464 FL L+ DGD V+VK+S+ ++ L Sbjct: 422 DFLDAMKDLIKDGDNVLVKASHGMDLTTIVEAL 454 >gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 497 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 187/373 (50%), Gaps = 22/373 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V+ + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYVALRGERFDGHDFAADAVAQGASGLLVDRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 V++ AL ++A A R +AT +IA+TGS GKT+ K +L L + YA Sbjct: 79 VLVENTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLSILEEAGRVDGTTVYAN 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD 257 + +A K+ I+ L G +N DD+F + + HA + + + +G +AD Sbjct: 198 LGSLLGVARTKSAIYAALPADGVAVINADDAFGAWFEQQLHAQPVHGRRVLRYGLQASAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R + Q + V QG++ ++ G H N L G+ + Sbjct: 258 LTARGLRLQDGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAAAGLALGAGIALPIIAAG 316 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ P GR + L+ G LID+SYNANP S+ AAI L+ G VLG Sbjct: 317 LAQARPVAGR--QIAHTLSSGAV-LIDDSYNANPGSLDAAIDTLAA----APGAGWLVLG 369 Query: 377 DMCEMGELSQSFH 389 DM E+G ++ H Sbjct: 370 DMRELGPEGKALH 382 >gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] Length = 455 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 139/458 (30%), Positives = 211/458 (46%), Gaps = 45/458 (9%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + IDSR++ P F AIKG DGHDF A GA V+ + + A Sbjct: 23 PEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLASRPVDA----- 77 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 P V DV+ AL LA A T++ +TGS GKTTTK++L I T A + Sbjct: 78 --PAVIVRDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLLAGLTERIGPTVAPV 135 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 GS+NN IG PLT+ + F + EL ++G I +LT + P I V+ + AH+ F Sbjct: 136 GSHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAYLTRIAPPRIGVVLNVGAAHIGVF 195 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E IA AK E+ E L + G LN DD + + ++ A + FG+S A + Sbjct: 196 GGREAIAKAKGELVEALPEDGVAVLNADDPYVREMAGRTRA----RVTWFGRSAEARIRA 251 Query: 261 RK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + C+ V+L+ +H G HM + L + L V Sbjct: 252 ENETLDERGRASFTLCTPSGSAPVRLR------LH---GAHMVPDALAAAAVAYELGLPV 302 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + LS P+ R+R + T+I+++YNA+P S++AA + L + G+ Sbjct: 303 VAIAEELSRAEPR----SRWRMEVTDRADGVTVINDAYNASPDSVRAAFAALRAM---GD 355 Query: 369 G-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 G RR AV+ M E+GE + + + + + + + G + P +IHV + Sbjct: 356 GRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDDAGPILAGAPGAIHVPDT 415 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D + S L GDVV+VK + G R+ +L Sbjct: 416 ---DAAARELASRLAPGDVVLVKGPRAAGLERVAAAVL 450 >gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] Length = 438 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 8 VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGALK--- 64 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 V D L AL KLA A R + ITGS GKTT KEML L + A G+ Sbjct: 65 --VGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLATAGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + P++A++ AH+ F Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVGCGFD 182 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI+EGL G + +D+ +A + L +T FG + + D Sbjct: 183 GVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNAQT---FGVA-SGDIHAE 238 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + ++ + + VV G H N + + + L F Sbjct: 239 NIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFS 298 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + QG TLID++YNANP SMK AI VL+ + RI V+GDM Sbjct: 299 NIKG-----RLNIKQGIKGATLIDDTYNANPDSMKVAIDVLAAMP----APRIFVMGDMG 349 Query: 380 EMGE 383 E+GE Sbjct: 350 ELGE 353 >gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK355] Length = 454 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 212/443 (47%), Gaps = 33/443 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + + L VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAYIL------VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG + D L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDTDIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR 331 + +++ G + A N M ++ +TAI +A S R + ++ Sbjct: 257 GCNFLEQRIDL--PVTGKYNATNA-MIAAYAALQEGVSETAIAQAFSELELTRNRTE-WK 312 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H Sbjct: 313 KAANGA--DILSDVYNANPTAMRLILETFSTIPANSGGRKLAVLADMKELGADSKSMHGS 370 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSL 441 + L+ ++ ++L G + AL D + I+ VHY + + L ++ SL Sbjct: 371 MITSLNPEILTDLFLYGQDMEALYD-YAKEIYPPGKVHYFIKNDEKDQFEQLTKAVRESL 429 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 430 TSADQILLKGSNSMNLAKLVEDL 452 >gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] Length = 473 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 30/475 (6%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G S I P V G + IDSR +AP F A G DGHD+ AV+ Sbjct: 5 SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYARRAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V + + +P V+DV+GAL LA A R T++ +TGS GKT+TK Sbjct: 65 -------GAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAGKTSTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L T GS NN IG+P+T + + E+G +G IR+L L Sbjct: 118 DLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHLVLEMGARGIGHIRYLADLTP 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I ++ + AHL F E IA AK E+ E L + G LN DD + +++ A Sbjct: 178 PRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASRTRA-- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + FG++ AD + K + + + E+ +V G H N L + Sbjct: 236 --RVLLFGEAPEADVRGEKVRMTPDGRPAFELHTPTGCSDVTMRLYGEHHVSNALAAAAV 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS---MKAAI 357 L V +ALS + G R+R + + T+++++YNANP S A+ Sbjct: 294 AHELGMSVTEIAEALS----EAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALRAL 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHV 411 + + Q GR AVLG M E+G+ S + H + + N+S + G + Sbjct: 350 AAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQL 409 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + VH S+ + L ++S L GDVV+VK+S S G ++ LLE Sbjct: 410 GAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47901] Length = 457 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455 >gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens] Length = 606 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/421 (29%), Positives = 199/421 (47%), Gaps = 54/421 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W H + A+ G ++ +G I D+R++ + F A+ G ++DGH F+ A +K Sbjct: 116 MWDAHAIAHAVHGK---VLAEGGAGSICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172 Query: 64 GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV N S G + + D L AL LA R R ++ +TGSVGKTT Sbjct: 173 QCAGVVANWVPHGWSRGFVQVE----GDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228 Query: 123 KEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + M T+AL + + G++NN IGV LTL R+ + ELGM+H GEI L + Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288 Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + V+ + PAH+ NF G+EE+A+AK EIF +N DD L A Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP---LAMAVPL 345 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------------------- 277 G++ + FG+ + +D +L K + + V L+ Sbjct: 346 PAGVRVV-RFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404 Query: 278 ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +E G H+A N + + L +++ ++LS+F P + RC + Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPID-----MRCQV 459 Query: 335 ------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +I++ YNANP S++A++ +L + RRIA+LGDM E+GE+S S Sbjct: 460 EAVGPASHVQILVINDCYNANPMSVEASLQLLQSVK---SNRRIALLGDMFELGEISLSS 516 Query: 389 H 389 H Sbjct: 517 H 517 >gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] Length = 485 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 60/474 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP------- 84 IDSR + F A++G DGH+F+ A +GA +V V+S+ +L P Sbjct: 36 IDSRLATSECLFVALRGERVDGHEFLADAAARGARGALVRRSKVSSL-TLERPYVVIDPV 94 Query: 85 --------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + VDD ALN+LA R +I ITGSVGKT+TKE+ L Sbjct: 95 TGEGLERATPDTMLLIAVDDPQAALNRLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVL 154 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +T SYN+ +P+ L ++ D + E+GM GEI L L RP + ++T Sbjct: 155 QRSFRTLKSPRSYNSEATLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVT 214 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + P+HL IE I AK+E+ + L + G LN DD + + A + + Sbjct: 215 NVGPSHLERMGSIEAIQRAKSELPQALPEDGFAILNIDDPRVRAMAEVTRA----RPFFY 270 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G AD W E LQG S V + G G H+ L LG S+ TA Sbjct: 271 GLDPAADL----WADAIESRG----LQGVSFRVHYQGDGLHLT---LPLLGRHSVHTALA 319 Query: 311 DTAI--------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +A+ EG R TLID++YNA+PASM+AA+++L++ Sbjct: 320 AASAGLLLGMEWEAIIAGLRSEGAQLRLLAVPGINQTTLIDDTYNASPASMQAALNLLAE 379 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHVLALK 415 + +GRRIA+LGDM E+G + + H ++A++L W++ A + Sbjct: 380 L----DGRRIAILGDMLELGSIEEEAHRMVGARAAEVAQILIAVGQRARWIANE---AQQ 432 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 LP + V+ + D ++ L GD V++K S +++ L P Sbjct: 433 AGLP-ADQVYAVDDNDAAAHLARNLLAPGDFVLIKGSRGMFMETIVSQLQAHRP 485 >gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia stali symbiont] Length = 453 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 200/440 (45%), Gaps = 18/440 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R + F A+ G +D +DF A+ GA ++VN + ++ +P V Sbjct: 27 VTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALLVNRRL-----AVDVPQVVVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D A +L R ++KA ++ +TGS GKT+ KEM L +T G+ NN GV Sbjct: 82 DTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEMTAAILRQCGETLYTAGNLNNDYGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + E+G +H GEI + T+LVRP A++ +A AHL F + +A A Sbjct: 142 PMTLLRLTPQHAYAVIEMGANHQGEIAYTTNLVRPETALVNNLAAAHLEGFGSLAGVAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--S 267 K EIF GL GT +N D + +++ K ++ F AD + R + Sbjct: 202 KGEIFGGLPVHGTAIINADSNDLPNWQSQ---FADKILWRFSPQPMADAEFRASDIVLRA 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + + V G H N L + + A + L P GR Sbjct: 259 DATLFTLHTPRGDIAVELPLPGRHNIANALAAAALALSVDAPLTAIQSGLKTLQPVPGRL 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 R A NQ L+D+SYNAN SM AA VL + G R+ V+GDM E+G+ +++ Sbjct: 319 FPIRLAGNQ---LLLDDSYNANVGSMTAAAQVLGDMP----GFRVMVVGDMGELGDEAEA 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E I V +G + ++ R H + + S D + Sbjct: 372 CHRQVGEAAKAAGIDCVLSTGSFSHLISESSGRGEHFASKAELTERLRTLLSQHAD-ITI 430 Query: 448 VVKSSNSCGFYRLINLLLEE 467 +VK S S +++ L E+ Sbjct: 431 LVKGSRSAAMEQVVQSLQEK 450 >gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 452 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 198/382 (51%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +SI+S I Q+A F + DGHDFI A+ GA + +V+ ++IP Sbjct: 23 IQTVSINSNEI-KQDALFVAIVANRDGHDFIPSALSYGAKAL-----LVSKKQDINIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R K II++TGS GKTT KEM+ L KK + G++NN+ Sbjct: 77 VCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGG-KKVHFTQGNFNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G S GEI+ +++P++A+IT + +HL N ++ + Sbjct: 136 LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L K G +N DD E + A + L I +++AD + ++ Sbjct: 196 MIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLDCNKITCSMSNQDADIIILDYQVI 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E +++++ K IG H N + L I S++ A ++ + + K + Sbjct: 253 PELYDVKIRIFDKEYSYQLPNIGKHNLSNSM--LAIASVVAARLEPNDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI+ L++ +G+++ + M E+G+ Q Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIADLAEF----DGKKVIAITSMRELGDEGQ 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L+ + +++L G Sbjct: 366 NYHRKMGQWLNKAGLDNIFLFG 387 >gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/421 (29%), Positives = 199/421 (47%), Gaps = 54/421 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W H + A+ G ++ +G I D+R++ + F A+ G ++DGH F+ A +K Sbjct: 116 MWDAHAIAHAVHGK---VLAEGGAGSICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172 Query: 64 GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV N S G + + D L AL LA R R ++ +TGSVGKTT Sbjct: 173 QCAGVVANWVPHGWSRGFVQVE----GDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228 Query: 123 KEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + M T+AL + + G++NN IGV LTL R+ + ELGM+H GEI L + Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288 Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + V+ + PAH+ NF G+EE+A+AK EIF +N DD L A Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP---LAMAVPL 345 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------------------- 277 G++ + FG+ + +D +L K + + V L+ Sbjct: 346 PAGVRVV-RFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404 Query: 278 ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +E G H+A N + + L +++ ++LS+F P + RC + Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPID-----MRCQV 459 Query: 335 ------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +I++ YNANP S++A++ +L + RRIA+LGDM E+GE+S S Sbjct: 460 EAVGPASHVQILVINDCYNANPMSVEASLQLLQSVK---SNRRIALLGDMFELGEISLSS 516 Query: 389 H 389 H Sbjct: 517 H 517 >gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA04375] Length = 457 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIRL--AFQDLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974] gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974M2] gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41301] Length = 457 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 219/475 (46%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q+ + ++ +A + + G Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENE 455 >gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 212/466 (45%), Gaps = 23/466 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++ A G G V F + IS D+R+I F A++G +DGHDFI A++KG Sbjct: 4 FTLQEIIDATSGTCKGDVSLQFKD-ISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I V++ L A LA R R + ++AITGS GKTTTKE Sbjct: 63 ATAAIVEKGRSVD----GIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LS+ ++NN IG+P TL ++ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT + +H+ E IA AK E+ L LN DD F +KA S Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHF---VKAMSSIAEG 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KT+ ++G NA + + + + +V IG H + L + Sbjct: 236 KTV-TYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAAIAAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L K LS F G R + L D +YNANP+SM +I L Q+ Sbjct: 295 VLGVKSSKIKKGLSDFT---GTPMRQEIVAFEDIVILND-AYNANPSSMSESIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIH 423 R+IA+LGDM E+G+ ++ H + +L+ S V+ G K+A + Sbjct: 351 GK---RKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIAKEAKLAGLE 407 Query: 424 VHYSET---MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH + M + I+ GDV++VK S R++ L E Sbjct: 408 VHRCNSHLEMANAYNDIREK---GDVILVKGSRGLRMERVVEELKE 450 >gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] Length = 457 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 216/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAYLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q+ + ++ +A + + G Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 290 VSE---EQIHQAFQDLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/404 (31%), Positives = 196/404 (48%), Gaps = 39/404 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ID+R + F A+KG +DGHDF AV GAG ++V+ ++ + P Sbjct: 11 ITEVTIDTRQVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGAPQL 65 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL + A R + A ++A+TGS GKT+ KEM+ L G++NN Sbjct: 66 VVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNND 125 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ ++ AHL F + + Sbjct: 126 IGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGSLAGV 185 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 A AK EIF GL GT +N D + + H K ++ F +++ DF + Sbjct: 186 AQAKGEIFAGLPANGTAIINADSHDWPHWQETLHN---KRVWRFSPHAAEDIDFYASDVR 242 Query: 265 QCSEQSW-----------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + ++ +E+ L G+ H+ A + M++G AD+ Sbjct: 243 ITPQTTYFILHSPFGIVDIELPLPGR-----HNIANALAAAALAMSVG------ADLAAV 291 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L+ GR + L G L+D+SYNAN SM AA VL+++ G R+ Sbjct: 292 RQGLTQLQAVPGR--LFPIQLAAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVM 344 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 V+GDM E+G+ + H + E + V G LAL DA Sbjct: 345 VVGDMAELGDTAVDCHRQVGEAAKQAGVDKVLSVGTLSLALSDA 388 >gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 471 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 209/447 (46%), Gaps = 32/447 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F A G DGHDF V+ GA V+ + + +P VDDV Sbjct: 34 DSREVESGSLFVAFAGERVDGHDFAAAVVEAGAVAVLASR-------PVGVPAIVVDDVQ 86 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL LA R AT++A+TGS GKT+TK+++ L S T GS NN IG+PLT Sbjct: 87 TALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLT 146 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + F + E+G +G IR+L L P + ++ + AH+ F G E+IA AK E Sbjct: 147 ALSATEETKFLVLEMGARGIGHIRYLADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGE 206 Query: 213 IFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSE 268 + EGL E G LN DD + +++ A + FG+S AD + + Sbjct: 207 LVEGLPPAEDGGAAILNADDPLVRAMASRTKA----RVILFGESDEADVRAENVRLTAGG 262 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q + +V G H N L + L D +ALS + G Sbjct: 263 QPSFSLHTPSGCSDVTMRLYGEHHVSNALAAAAVAHELGMSADEIARALS----EAGSLS 318 Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELS 385 R+R + + T+++++YNANP SM+AA+ L+ + G+GRR AVLG M E+G+ + Sbjct: 319 RWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGKMAELGDEA 375 Query: 386 QSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + H + + N+ + G + A + VH S+ + L ++S Sbjct: 376 LAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSDAQAAVDL-LRS 434 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLE 466 L GDVV+VK+S S G + LLE Sbjct: 435 ELRPGDVVLVKASRSVGLESVAQALLE 461 >gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] Length = 934 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 17/366 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+RSIA + F A+KG +DGH ++ A++ GA VV A +++P F + Sbjct: 500 ISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTA----VALPQFVLG 555 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL +++ R + ++A+TGS GKTTTKEM+ + + A G+ NN Sbjct: 556 DTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRGNLNND 615 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT+ R+ +FELGM+H GEI L + +P +A++ H +E + Sbjct: 616 IGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVNNAQREHQEFMLTVEAV 675 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + + L G DD++ +L + G +T+ FG S + D + Sbjct: 676 ARENGTVIDMLPVDGIAVFPGDDAYSDLW---AELAGTRTVLRFGFSPDFDVYADQIHAE 732 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + S + G H +N L +++ ++ L F+P GR Sbjct: 733 PTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSGR 792 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + A G + LID++YNANP S++AAI VL+++ +G+R+ VLGDM E+G Sbjct: 793 MQPHALA---GGYQLIDDTYNANPDSVRAAIDVLAEL----DGKRVLVLGDMGEVGANGD 845 Query: 387 SFHIDL 392 + H ++ Sbjct: 846 AMHAEV 851 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 29/371 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 + +D+R ++ + FFA G DG D+I AV+ GA +V+ D AS ++ +PV V Sbjct: 23 LCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQADDRASATPAIDVPVLAV 82 Query: 89 DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 D+ G L + R +++A+TG+ GKT+ + L AL++ IG+ Sbjct: 83 PDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAALNAEGTPCGTIGTLGVT 142 Query: 144 ---NNHIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N++G LT LA M + L S +G + VR IA T Sbjct: 143 LPNGNNLGGVLTTPDVLSMHRSLATMRA-AGAQVVALEASSIGLDQGRLDQVRIVIAAFT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL ++ AK +F G + +N DD + L + YS Sbjct: 202 NLTHDHLDYHGTLDNYQRAKFSLFAWPGLRGAV-VNVDDPAGKQL-VSTLPPASTLAYSI 259 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 A Q + V + +++++ +G H N+L+ G++ L D+ Sbjct: 260 SGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQLLTRLVGEHNVANLLLVTGVLQQLGWDL 319 Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + LS EGR + A + ++D Y P ++K A+ L ++ Sbjct: 320 SRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVD--YAHTPDALKRALLALRDVAR 377 Query: 366 HGEGRRIAVLG 376 G+ I V G Sbjct: 378 VRGGKLICVFG 388 >gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] Length = 459 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 205/453 (45%), Gaps = 38/453 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR I F IKG DGH FI ++KGA + +++V + ++S P Sbjct: 28 VAGVAIDSRKIEKDWLFIPIKGARVDGHSFIPQVMEKGA--LCTLSEVV--LENVSHPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VD AL +A R ++ ITGSVGKT+TKEM+ L G++NN Sbjct: 84 LVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTSTKEMIASVLEQKYHVLKTAGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G++H GE+ L + RP I VIT I HL N + I Sbjct: 144 IGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMARPDICVITNIGLCHLENLIDRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWK 264 AK E+F+ ++ I LN DD + K +T FG S D F Sbjct: 204 LKAKTEMFDFMQPDAKIILNGDDDKLITVTDVKG-----QTPMFFGLSTELDAFADNIHT 258 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + L ++ + G HM N L + L + K + P Sbjct: 259 HSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVS 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR L +ID+ YNANP S KA+I VLS E R++A+LGDM E+GE Sbjct: 319 GRNNMI---LTDSLL-IIDDCYNANPVSTKASIDVLSG----AETRKVAILGDMFELGED 370 Query: 385 SQSFH-----------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 + H IDL V+ + +S +G L+ + + VH+ D Sbjct: 371 EKELHRQVGVHASEKGIDL--VICIGELSKATAAGAEELSAGNQV-----VHFDTKAD-F 422 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 F + L D ++VK+S+ F ++ L E Sbjct: 423 FTKMNELLHKDDTILVKASHGMEFPEIVTRLQE 455 >gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] Length = 464 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/482 (28%), Positives = 218/482 (45%), Gaps = 52/482 (10%) Query: 6 TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ +A +G IG + + G IDSR + F IKG DGH FI ++ Sbjct: 10 TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIPTVFEQ 69 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ ++ G P V+ A+ KLA R ++ ITGSVGKT+TK Sbjct: 70 GAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM++ L + G++NN IG+PLT+ + + E+G+S GE+ L+ + Sbjct: 126 EMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRLSTMSC 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------- 236 P + VIT I HL + + AK E FE + LN DD ++ Sbjct: 186 PDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTVNGKPA 245 Query: 237 ---AKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 K A G+ K++Y+ +N F K + + + + H G H Sbjct: 246 IYYGKESASGVHKSVYTT-NIENLGFDGMKAHFVTPEGEFDAHI---------HIPGEHN 295 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N + + L L++ K G K A F T+ID+ YN Sbjct: 296 VYNAMAAAAVGLQL---------GLTIAEIKSGIEKAETIAGRTNFIKTHGMTVIDDCYN 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANP SMK++I VLS H +GR IAVLGDM E+G + H ++ E + +I ++ + Sbjct: 347 ANPVSMKSSIEVLS----HAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAA 402 Query: 408 GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 G LA + A + +HY E + + + S + +GD ++VK+S+ F +++ Sbjct: 403 G--ELAKEYAAGAAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVE 460 Query: 463 LL 464 L Sbjct: 461 AL 462 >gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] Length = 450 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 17/390 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + F A+KG +DGHDF AV GAG ++V+ ++ + +P V Sbjct: 24 VTIDTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGVPQLVVK 78 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A R + A ++A+TGS GKT+ KEM L G++NN IGV Sbjct: 79 DTRLALGQFAAWIRQQVPARVVALTGSSGKTSVKEMTAAILRECGNVLYTAGNFNNDIGV 138 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 139 PLTLLRLTAEYDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQA 198 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKWKQCS 267 K EIF GL GT +N D + + + H K ++ FG +++ DF + Sbjct: 199 KGEIFAGLPANGTAIINADSNDWPHWQETLHN---KRVWRFGLQAAEDIDFYATDVQITP 255 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + ++ + G H N L + + AD+ + L GR Sbjct: 256 QATHFTLHSPFGTVTIELPLPGRHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGR- 314 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + L G L+D++YNAN SM AA VL+++ G R+ V+GDM E+GE + Sbjct: 315 -LFPIQLATGKL-LLDDTYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAID 368 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 H + E I V G L DA Sbjct: 369 CHRQVGEAAKQAGIDKVLSVGTLSQTLSDA 398 >gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 20/385 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR +A F A++G +D H F+ ++ VV L++P Sbjct: 24 DGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVAEK----IPAGLNVPALI 79 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144 V D AL ++A R + +I +TGS GKTT KEM+ L + A G++N Sbjct: 80 VPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFN 139 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVPLTL R+ + ELGM+H GEI L+ + +P + ++ H +E Sbjct: 140 NDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVE 199 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A + L G DD+F L +S+A KT+ +FG S +AD + + Sbjct: 200 AVAQENGAVLASLPADGVAVFPADDAFTPLW--RSYAAQRKTL-TFGFSADADVRC-TYA 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + M V + + G H +N L + + + ++ L F P Sbjct: 256 ANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVS 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGE 383 GR +R A +ID++YNANP S++AAI VL+Q+ SP RI VLGDM E+G Sbjct: 316 GRLQRKLAASGA---LVIDDTYNANPDSVRAAIDVLAQMASP-----RILVLGDMGEVGN 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 + +H ++ I HV G Sbjct: 368 DGRQYHEEIGAYARANGIEHVLALG 392 >gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] Length = 457 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 136/478 (28%), Positives = 219/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ QA+ + + + + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLTPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] Length = 464 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 217/453 (47%), Gaps = 28/453 (6%) Query: 23 PQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V + D+R P+ A FFA+KG ++GH F+ A KGA VV+ + Sbjct: 22 PDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAEAGAKGALGAVVS-----RLPEQ 76 Query: 82 SIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P + V DVL AL +LA R + +I +TGS GKTTTK++L L+ + Sbjct: 77 PLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGKTTTKDLLAAVLAVRHRVL 136 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A G+ NN IGVPLTL + + +F + E+ M GEI L+ L P+ AVIT I AHL Sbjct: 137 ATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALSALAEPNAAVITNIGEAHL 196 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + IA AK EI + + G L + F E + K IY FG+S A Sbjct: 197 ERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRCRG---KVIY-FGESDKAQ 252 Query: 258 FQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 +L + E+ + V+ E GYH A N + I L + + Sbjct: 253 VRLLSYTSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNCTAVIAIARQLGFSPEEVQEG 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVL 375 F + G R +G FT+I+++YNANPASM A+ VL+++ G+GRR +AVL Sbjct: 313 ---FRRVQTSGMRLEIEHWRG-FTVINDAYNANPASMAGALEVLAEL---GKGRRKVAVL 365 Query: 376 GDMCEMGELSQSFHIDLAE----VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 GDM E+GE + + H ++ E V L + AL +P V T++ Sbjct: 366 GDMLELGERTVAAHREVGEKAAAVADLLVVVGERARDLAAGALSAGMPPD-RVLAVATVE 424 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +V++VK+S + G R++ L Sbjct: 425 EAIRQLMNELEGDEVLLVKASRAMGLERVVQAL 457 >gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 453 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/467 (27%), Positives = 228/467 (48%), Gaps = 34/467 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ GA Sbjct: 4 TLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGA 63 Query: 66 GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 + +++ ++ + L+ V V D AL LA R + ++ ITGS GKT+TK Sbjct: 64 TVAIID-EVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI LT++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + ++ T+ +NY++ + + + H Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKVN-EDHEFK 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I+ I G K D + E S+ V G+ + +G H N L+ + I Sbjct: 242 IEKI---GYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SMK+A+SVL Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLE----FIKKNNFTIINDCYNASPDSMKSALSVLKT 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAE-VLSLYNISHVWLSGFHVLAL 414 S R+IAVLGDM E+G+ ++S H I A+ +L+ + SGF Sbjct: 355 YSG---SRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKSGFG---- 407 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ + E + ++ + + DGDV++VK+S S F ++ Sbjct: 408 ----KGAVSFNCKEDLQN---YLCNLIKDGDVILVKASRSAKFEDVV 447 >gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EuI1c] gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EuI1c] Length = 493 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/444 (29%), Positives = 208/444 (46%), Gaps = 25/444 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V +DSR + P F A+ G DGHDF AV V + +S+P Sbjct: 26 LVTAAVVDSRLVEPGALFVALPGARVDGHDFAAGAVAA-------GARAVLAARPVSVPA 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D GAL LA R +KAT++AITGS GKTTTK++L L S+ T A GS+NN Sbjct: 79 VLVADPAGALMALAAHVRTLTKATVLAITGSSGKTTTKDLLADLLGSLGPTLAPPGSFNN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIE 204 IG+PLTL R+ D ++ E+G +G I L + RP + V+ + AH+ ++ G Sbjct: 139 EIGLPLTLLRLEPDTEYVALEMGARGIGHIAALCQVARPQVGVVINVGSAHVGEYADGRA 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK E+ E T + LN DD ++ ++ + + +FG + +AD + + Sbjct: 199 GIAQAKGELAEA--ATDVVVLNADDPLVAAMRPRAAG---RRVVTFGVAADADVRAERIA 253 Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++ ++ + V +G H N L + A AL+ P+ Sbjct: 254 LDAAGRASFDLVTDAERHRVALALVGEHQVGNALAAAAAALAVGMTPTAAAAALAAARPR 313 Query: 324 EGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISPHG--EGRRI-AVLGDM 378 R+R + +++++YNANP SM+AA+ L + G + RR AVLG M Sbjct: 314 ----SRWRMEVTTAPSGLVVVNDAYNANPESMRAALRALVGLGADGGPDRRRTWAVLGPM 369 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFI 437 E+G +++ H +L + + + G + A V + +D + Sbjct: 370 GELGTAAEAEHAELGRFAARLGVDRTVVIGEAARPLAQAAAGAGARVDWVADVDAAAELL 429 Query: 438 QSSLV-DGDVVVVKSSNSCGFYRL 460 ++ + D DVV+VK+S + G R+ Sbjct: 430 ATAALGDADVVLVKASRAAGLERV 453 >gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] Length = 478 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 222/483 (45%), Gaps = 49/483 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + D +A+ H V QG V + + DSR I P + F A++G +DGH+F+ A+ Sbjct: 9 MMSLLDASRALSAHHA--VAQGAVRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAAL 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA +V+ G S+P+ VDD AL LA R R +I +TGS GKTT Sbjct: 67 KAGAAAAMVDARGFTEFGDASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTT 126 Query: 122 TKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 KEM L + + A G+ NN IG+PLTL + + E+GM+H G Sbjct: 127 VKEMCAEILRAQARRDGAGDEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPG 186 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---S 230 EI +LT L RP +A++ AHL + E+A K I++GL G +N DD Sbjct: 187 EIAYLTGLARPTVAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAG 246 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHHG 287 ++ L A + I SFG + AD +C+ S + + EV Sbjct: 247 YWRDLNAG------RPIVSFGIDQPADVA----GECTLHGLGSQLHIAAPQGRGEVELQV 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESY 346 G H A N L + A++ L+++ EG RG+ R + QG ++D+SY Sbjct: 297 PGLHNASNALGAAAACLAAGVVFEAALEGLALY---EGTRGRLQRRSGPQG-AVILDDSY 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP S++A I VL+ H VLGDM E+G+ S H ++ I ++ Sbjct: 353 NANPDSVRAGIDVLASTPGH----TFLVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLY- 407 Query: 407 SGFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 AL +A ++ H+ ++++ L + L VV+VK S R+ Sbjct: 408 ------ALGEASAIAVRNFGEGAHHFDSVEALVAALAPRLDADAVVLVKGSRFMKMERVA 461 Query: 462 NLL 464 + L Sbjct: 462 DAL 464 >gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 466 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 216/473 (45%), Gaps = 48/473 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ +A+ G + P V G + DSR F A G DGHD+ Sbjct: 1 MIPL-TLAEVAEAVGGRLVAADPAALVTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 AV GA V+ ++ +P+ V D L A+ +LA A R A T+I +TGS G Sbjct: 60 AVAGGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + D F + E G +G +R+L Sbjct: 114 KTTTKDLIAQLTVRLGPTVAPPGSFNNELGHPWTALQADQDTRFLVLEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD +++ A+ Sbjct: 174 CEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVMAAR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 + A + +G++ +AD + ++ V +G + V G+ G H N Sbjct: 234 TAA----RVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSA--AVRLGLTGRHQVSN 287 Query: 296 MLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + L A++ A+ L + +R T+ID+SYNANPAS Sbjct: 288 SLAAAAVARELGMPLAELAAALGELGLVST-----RRMDVFERPDGVTVIDDSYNANPAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A+ L+ + G GR +AVLG M E+GE + H+++ + + + + + G Sbjct: 343 TAVALRALAGM--RGAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVG---- 396 Query: 413 ALKDALPRSIHVHYSETMD------------GLFLFIQSSLVDGDVVVVKSSN 453 + A P IH + D ++S L GDVV+VK S Sbjct: 397 --EPAAP--IHEGATAVEDWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR 445 >gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] Length = 457 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 219/475 (46%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q+ + ++ +A + + G Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 290 VSE---EQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENE 455 >gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] Length = 457 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 136/478 (28%), Positives = 219/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ QA+ + + + + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLTPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS + V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 207/455 (45%), Gaps = 21/455 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V ++ DSRS+ P + F A+ G +D HDF+ V +GA V+V+ A + Sbjct: 26 PDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSG 85 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D AL +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 86 VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 146 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255 +E +A+ A + L G D + + L +A A G + + FG Sbjct: 206 MVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A ++ ++VQ G +G H A+N L + + Sbjct: 263 AVSA--TVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATACALAAGIAPEVIAQ 320 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ALS F P +GR +R + ++ G ++D++YNANP S++AAI L+ + R VL Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----APRWLVL 373 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G +FH ++ I V +G + DA H++ + + L Sbjct: 374 GDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ G V+VK S R+++ L+ + PA Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC 35316] gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cancerogenus ATCC 35316] Length = 452 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 211/442 (47%), Gaps = 19/442 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF+ A + GAG ++V+ + + +P Sbjct: 24 IDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGAGALLVSRKL-----DIDLPQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L T G+ NN Sbjct: 79 VVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + +F + ELG +H GEI + L P A++ +A AHL F +E + Sbjct: 139 IGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVSLTCPEAALVNNLAAAHLEGFGSLEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL G +N D++ + L +S +G + + F + N+DF Sbjct: 199 AKAKGEIYTGLPADGIAIMNADNN--DWLNWQS-IIGSRKTWRFSPNAANSDFTATNIHV 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + + ++V+ G H N L + + A D L+ G Sbjct: 256 TSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAAALSMAVGASHDAIKTGLANLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R A N+ L+D+SYNAN SM AA+ VLS++ G R+ V+GDM E+G+ S Sbjct: 316 RLFPIPLAENK---LLLDDSYNANVGSMTAAVQVLSEMP----GYRVMVVGDMGELGDES 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDG 444 ++ HI + E + V +G A+ A H +E ++ L I + Sbjct: 369 EACHIQVGEAAKAAGLDCVLSAGKLSQAISQASGVGEHFATKAELIERLNALIAEKQI-- 426 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L E Sbjct: 427 VTVLVKGSRSAAMEEVVHALQE 448 >gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] Length = 457 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 34/450 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I + F +KG DGH+FI A + GA D+ A + Sbjct: 26 INQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFENGALATFTEKDLPADQAHIL---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L A KLA ++ +IA+TGS GKTTTK+M+ L++ +TY G+YNN Sbjct: 81 -VEDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTYKTQGNYNNE 139 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T MP D + + E+G H+G+I L+ L +P AV+T I AHL F ++I Sbjct: 140 IGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKI 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQ 265 A K ++ +G+ + + D L + + FG+ + +L ++K Sbjct: 200 AQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLE------VVRFGEGSDLTVSELTEYKD 253 Query: 266 --CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++++ Q+ ++ V G + A N ++ + + AL+ Sbjct: 254 HLTFSTNFLDGQI---TLPVT----GKYNATNAMVAAYVAKHWGVTEENIFSALANLQLT 306 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R ++ A N ++ + YNANP +MK + S I + G++IAVL DM E+GE Sbjct: 307 KNR-TEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGE 363 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLF 434 S H + L+ I V G + L + HV+Y + D + Sbjct: 364 QSVQLHTQMILSLAPDAIDTVIFYGEDIADLSQLASQMFPIGHVYYFKKTADEDQFDAMV 423 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ SL + D +++K SNS R++ L Sbjct: 424 KRIKESLGEHDQILLKGSNSMNLARVVEEL 453 >gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 457 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 140/478 (29%), Positives = 219/478 (45%), Gaps = 42/478 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + + + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ VA+ P VDDVL A LA +S + A+TGS GKTTTK+ Sbjct: 63 A-VVTLSEKEVANH-----PYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ P D + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTEKLVLEMGQDHLGDIHLLSKLAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEVTDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIAAY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S I + G++IAVL DM E+G+ S H + LS ++ V G + L Sbjct: 338 TFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIFYGEDIAELSQLA 397 Query: 419 PRSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 398 SQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] Length = 457 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 213/475 (44%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + +++ + + DSR IA + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V ++ VA+ P VDDVL A +LA ++ + A+TGS GKTTTK+ Sbjct: 63 AA-VTLSEKKVANH-----PYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPIVEDYLPTD------ 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLIERKDSLTFKANFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKGSNSMNLAKLLESLENE 455 >gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] Length = 457 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 205/451 (45%), Gaps = 43/451 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ DSR + P FFA+ G +DG+ F A + A +VV V S V V Sbjct: 29 GVCTDSRHLPPHAVFFALGGEKFDGNLFAPEASRTAAAVVV---SRVEEGMDPSCAVILV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L AL KLA R T+I +TGS GKT+TK++ LS +T A G+ NNHIG Sbjct: 86 EDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQGFRTIATQGNLNNHIG 145 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ R + ++E+GM+H GE+ L + RP I +IT+I +H+ E IA Sbjct: 146 VPLSILRATPSDEAAVWEMGMNHSGELAPLCEMTRPKIGIITSIGTSHMEYLGSRENIAR 205 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---------FQ 259 K + L + G + D + ++++ + A I G + + F Sbjct: 206 EKCTLARCLPEDGFMIFPADCDYADMIRQSTRAACIDCGIGAGTVRAENPVSTENGTRFI 265 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 L C E EV+L VH G HM N L+ + L+ Sbjct: 266 LSIPDFCRE----EVELP------VH---GRHMVTNALLAAAAGWAAGLAKEQIASGLN- 311 Query: 320 FHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + R G R C G ++D++YNANP SM+AA+ ++ +S GRR AVLG Sbjct: 312 ----QARLTGGRLHCTRINGIL-VVDDTYNANPDSMQAALHTVAGLS--CTGRRFAVLGR 364 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDG 432 M E+G S+ H+ + + V G + DA+ +S+H +E Sbjct: 365 MGELGAFSEEGHVLVGRTAEELRLDCVVSVGTDAARITDAISPNAFTQSLHFGSAEEA-- 422 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +++S GD+V+ K S +++NL Sbjct: 423 -AEWLRSHTAPGDIVLFKGSRLARMEQVMNL 452 >gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis L2TR] gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis L2TR] Length = 467 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 186/386 (48%), Gaps = 18/386 (4%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + + ++G IG ++ +S D+R+ F A+KG ++D HDF V++ Sbjct: 9 IAEQVEGRLIG--SDCTIDAVSTDTRADLTDALFIALKGKNFDAHDF----VEQAIAKGA 62 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + S + V++ AL +L A + + +A+TGS GKTT KEML Sbjct: 63 AAIICEKKVDSECRQII-VENSRHALGRLGAAIKAKVAPKTVAVTGSNGKTTVKEMLAAI 121 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS A G++NN IGVPLTL R+ + + + ELG +H GEI + T LV+P +A++ Sbjct: 122 LSIRHPVLATQGNFNNDIGVPLTLLRLQEEHKYAVVELGANHPGEISYTTDLVKPDVAIL 181 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ AH+ F + +A AK EIF G+ GT D F+ + + KT Sbjct: 182 NNVSAAHVEGFGSLHGVARAKTEIFRGVGGQGTAITPRDSEFYPCWQRACSDMQWKT--- 238 Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 FG S +AD SE + L G++ ++ G H N L S L Sbjct: 239 FGLSDSADVYASDVTLNSEGHPSFTLHLGGETKQLELKLSGRHNVLNALSAAAAASELGI 298 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 ++ L P +GR + + +ID++YNA+ AS KAA+ +L + Sbjct: 299 SLNDIANGLQQVQPAQGRLTTIKVS---DHLRIIDDTYNASVASTKAALDLLGSY----Q 351 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAE 394 G RI VLGDM E+G ++++H D+ E Sbjct: 352 GYRIFVLGDMGELGADARAYHEDIGE 377 >gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 464 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 221/451 (49%), Gaps = 40/451 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 +DSR ++ F A+ G DGHD AV GA LV+ + ++ +P VDDV Sbjct: 31 VDSRKVSAGALFVALVGESSDGHDHAAGAVADGAALVLASRELDG------LPCVVVDDV 84 Query: 92 LGALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 AL +A RLR+ + A+TGSVGKTTTK++L LS T S+NN I Sbjct: 85 TRALGLVAAEHLRRLRASGPLQVAAVTGSVGKTTTKDLLGHVLSESGPTVMPRASFNNEI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLT+ + + + E+G S G++ +LT + P ++++ + AHL F G++ +A Sbjct: 145 GLPLTVLEAGPETRYLVLEMGASAPGDLTYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVA 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262 AK+EI GL G LN DD ++ L + +FG ++A + + + Sbjct: 205 RAKSEIVTGLRPEGVAVLNADDHRVVAMR----DLAPSRVVTFGTVRDAGVRAHRVSVDR 260 Query: 263 WKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + S Q + + S+ +V HH A + LG+ D+DTA +S Sbjct: 261 LGRVSCQVVVGERTADLSLRLVGEHHLTNALAALTAAVELGV------DLDTAAALVSSV 314 Query: 321 HPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGD 377 +R A+ + T+ID+SYNANP SM+AA+ L+ ++ G RR +AVLG+ Sbjct: 315 DAA----SPHRMAVTERPDGVTVIDDSYNANPDSMRAALKALAVVA--GRDRRSVAVLGE 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGL 433 M E+G S+ H ++ ++ NI + + G L D + V E + Sbjct: 369 MLELGPDSRDQHDEIGRLVVRLNIKLLVVVGAGASGLADGATQEGSWGEEVVEVEDVPAA 428 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 F+ L GDVV+VKSSN G +RL + L Sbjct: 429 ERFLAEELRSGDVVLVKSSNGSGLWRLGDAL 459 >gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] Length = 473 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 188/375 (50%), Gaps = 13/375 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASI 78 P V+ I+ DSR++ AF A+KG DGHDF A+ GA LV+V D+ +A Sbjct: 23 PLSRVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFA 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + V D AL+ LA A R A ++ +TGSVGKTTT+ + LS+ KT + Sbjct: 83 REAGCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVLSARFKTES 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NN +G+PLT+ P D + + E+GM G+I L + RP A+IT + AHL Sbjct: 143 TKGNFNNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARLAAVARPERAIITNVGTAHLE 202 Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKN 255 E IA AKAEI E L + G FL D F + + A+ GI+ + G+ Sbjct: 203 YLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGIRVVRFGGEGHA 262 Query: 256 ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 +D + +E + + QG+S G H QN I + Sbjct: 263 SDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIGLSYGMSLPDVC 322 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL+ + GR R + +G + L+D++YNA+P SM A++SVLS S G RIAV Sbjct: 323 HALAGAQAQAGRQALLR--MPEG-YRLLDDAYNASPESMAASLSVLSSFSTSGS--RIAV 377 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G S + H Sbjct: 378 LGDMGELGSASDAGH 392 >gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 503 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 133/430 (30%), Positives = 209/430 (48%), Gaps = 30/430 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA V+V+ + A LS+P Sbjct: 23 MIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 VD+ AL ++A A R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256 + +A K I+ L G +N DD+F FE + +S + + + +G +A Sbjct: 198 LGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGLQASA 256 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + R+ + + V QG++ ++ G H N L G+ L A + + Sbjct: 257 EITARQLRLHTGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A + + G++ L G LID+SYNANP S+ AAI L+ GEG VL Sbjct: 314 ADGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGL 433 GDM E+G + H + ++ G A A V ++E +D L Sbjct: 369 GDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAAAAQAFGEGARVFATHAELIDAL 428 Query: 434 FLFIQSSLVD 443 Q+ LVD Sbjct: 429 ----QADLVD 434 >gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya zeae Ech1591] gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae Ech1591] Length = 453 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 19/382 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ +S D+R + F A++G +D HD+ AV GA ++V+ + + +P Sbjct: 23 IISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGAAALLVSKHL-----PIEVPQ 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD AL +A R +S+A ++A+TGS GKT+ KEM L G++NN Sbjct: 78 LVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEMTASILRQCGNVLYTAGNFNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ + D+ + ELG +H+GEI + T +VRP A++ +A AHL F +E Sbjct: 138 DIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG--KSKNADFQLRK 262 +A AK EIF GL G +N D + +A+ L KT++ F + DF Sbjct: 198 VAQAKGEIFGGLPAQGVAIINADSND----EARWQDVLAGKTLWRFSPQECDGVDFYAGD 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + + V G H N L + + A ++ L Sbjct: 254 IRISERGTDFVLHSPMGDIAVTLPLPGRHNIANALAATALALAVGASLEAVKVGLEQLQA 313 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GR + AL G L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G Sbjct: 314 VSGR--LFPIALAPGKL-LLDDSYNANVGSMTAAVHVLAEMP----GYRVMVVGDMAELG 366 Query: 383 ELSQSFHIDLAEVLSLYNISHV 404 + +Q+ H + E NI V Sbjct: 367 QDAQACHRQVGEAACKANIDKV 388 >gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM 22836] Length = 429 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 136/438 (31%), Positives = 218/438 (49%), Gaps = 27/438 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R+ FFA+KG +++G+++ A+ +G VV+ + A+ ++ + V Sbjct: 16 ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPNIIL----VK 71 Query: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L L +LA R + K IIAITG+ GKTTTKE++ LS A G+ NNHIG Sbjct: 72 DSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + I E+G SH+GEIRFL + P+ +IT + AH+ F E + Sbjct: 132 VPLTLLRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLITNLGHAHIEGFGSFENVVK 191 Query: 209 AKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E++E + K G IF++Y + LL+ S GI +IY +G + F K Sbjct: 192 AKGELYEFIRSTKDGKIFIDYSNL---LLREMSE--GITSIY-YGLEDDL-FISGKVTSI 244 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +E + K +V + IG + N L + I L KA+ + P R Sbjct: 245 SPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASLICKAIEEYVPTNNR 304 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + N LI ++YNANP SM AA+ + + ++ +LGDM E+G + Sbjct: 305 SQLKKTEKNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTD 357 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H +A+ +S +N V G + +K PR + +D L +++ V+ Sbjct: 358 MEHQKIADYISDHNFERVMFIGDNFSRVKTKYPR------FKNLDDLKEYLKKDPVEDSY 411 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S + I++L Sbjct: 412 ILLKGSRGVQLEKCIDML 429 >gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus LMS2-1] Length = 463 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 132/442 (29%), Positives = 212/442 (47%), Gaps = 39/442 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + P F + G DGH+FI A GA V D + L P Sbjct: 28 TGVAFDSRRLKPGMLFVPLHG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 84 Query: 88 VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ KLA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 85 VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F +I Sbjct: 145 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI---KTIYSF---GKSKNA 256 A AK EI +GL++ GT N D+ + + G+ T+++ G + Sbjct: 205 ADAKMEITDGLKEDGTFIFNGDEPLLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHT 264 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 +F + +W + + + + G+ Y++ N L L + + KA Sbjct: 265 EFTVEQWPELT----FSIPIMGE----------YNVV-NALAALLVGRRFHVKPEAMQKA 309 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ F R + + + ++ + YNANP +MKA I S+ GR IAVLG Sbjct: 310 LAHFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFQ--TAGRHIAVLG 364 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMD 431 DM E+G+ S++ H LA+ L + I V+L G + AL +AL P+ +H + + Sbjct: 365 DMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKS 424 Query: 432 GLFLFIQSSLVDGDVVVVKSSN 453 + +Q+ + D+V++K+S+ Sbjct: 425 TMIRDLQNDVGHDDMVLLKASH 446 >gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus Lc 705] gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus Lc 705] Length = 462 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 136/438 (31%), Positives = 212/438 (48%), Gaps = 31/438 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + P F + G DGH+FI A GA V D + L P Sbjct: 27 TGVAFDSRRLKPGMLFVPLHG-ERDGHEFIPAAAAAGAVATFVAEDHLPMTTKL--PTLV 83 Query: 88 VDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A+ KLA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 VPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F +I Sbjct: 144 IGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL----- 260 A AK EI +GL++ GT N D+ LL +++ + ++ +FG +N F Sbjct: 204 ADAKMEITDGLKEDGTFIFNGDEP---LLVSRAKQV-TQSQETFGLHPENTLFAHSISGH 259 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R + + + W E+ M G + N L L + + KAL+ F Sbjct: 260 RNHTEFTVEQWPELTFSIPIM-------GEYNVVNALAALLVGRRFHVKPEAMQKALAHF 312 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + + ++ + YNANP +MKA I S+ GR IAVLGDM E Sbjct: 313 ---QVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEFQ--TAGRHIAVLGDMLE 367 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIHVHYSETMDGLFL 435 +G+ S++ H LA+ L + I V+L G + AL +AL P+ +H + + + Sbjct: 368 LGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLDAKSTMIR 427 Query: 436 FIQSSLVDGDVVVVKSSN 453 +Q+ + D+V++K+S+ Sbjct: 428 DLQNDVGHDDMVLLKASH 445 >gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] Length = 428 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 134/439 (30%), Positives = 217/439 (49%), Gaps = 30/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 ++ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G+ NNHIG Sbjct: 71 DNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L + +P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIK 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + +T G IF+N D+ + K A GI+ + ++G + A F C+ Sbjct: 191 TKGELYDYMRRTKGKIFINQDNKYL-----KEIANGIEQV-TYGSDETA-FAWGCVVSCN 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + QGK V H IG + N L+ + + + +A++ + P R Sbjct: 244 PYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERISRAITAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + +SP + +LGDM E+G S Sbjct: 304 QLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSP-----KALILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H ++ + N V+L G H + A + + T + L ++ + ++G Sbjct: 355 DELHTEVVARIKEGNYDKVFLCGEH---FQKAAGKDFTTY--ATTEELIEALRKNPLEGY 409 Query: 446 VVVVKSSNSCGFYRLINLL 464 V++K S+ R++ +L Sbjct: 410 HVLIKGSHGMALERVVEVL 428 >gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] Length = 428 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 134/439 (30%), Positives = 217/439 (49%), Gaps = 30/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 ++ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G+ NNHIG Sbjct: 71 DNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L + +P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFGSFEGVIK 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + +T G IF+N D+ + K A GI+ + ++G + A F C+ Sbjct: 191 TKGELYDYMRRTKGKIFINQDNKYL-----KEIANGIEQV-TYGSDETA-FAWGCVVSCN 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + QGK V H IG + N L+ + + + +A++ + P R Sbjct: 244 PYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERISRAIAAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + +SP + +LGDM E+G S Sbjct: 304 QLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSP-----KALILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H ++ + N V+L G H + A + + T + L ++ + ++G Sbjct: 355 DELHTEVVARIKEGNYDKVFLCGEH---FQKAAGKDFTTY--ATTEELIEALRKNPLEGY 409 Query: 446 VVVVKSSNSCGFYRLINLL 464 V++K S+ R++ +L Sbjct: 410 HVLIKGSHGMALERVVEVL 428 >gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] Length = 470 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 182/393 (46%), Gaps = 35/393 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F AIKG +D HDF+ ++ V+V + + ++P V Sbjct: 29 VSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV----ARTPENWNVPAIRVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R + + ++A+TGS GKTT KEM+ A A G++NN Sbjct: 85 DTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL R+ + ELGM+H GE L L P +AV+ H + +E + Sbjct: 145 IGLPLTLFRLHAAHRLAVVELGMNHPGETELLAKLAEPTVAVVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L GT DD++ + + A G + I DF L ++ Sbjct: 205 ALEHASVIHALSPQGTAVFPADDAYASIWRVA--ATGNRII---------DFALNSAERT 253 Query: 267 SEQSWMEVQLQGKSM---------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +E + ++ GK + +V +G H A N L +D + L Sbjct: 254 TEAA-VKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNALAATSAALAAGVSLDAIQRGL 312 Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375 F +GR + + AL T+ID++YNANP SM+AAI VL S+ SP R+ V+ Sbjct: 313 ESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAIDVLASRASP-----RVLVM 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 GDM E+G+ +FH ++ I ++ G Sbjct: 368 GDMGEVGDNGPAFHREIGAYAKERGIDALYAMG 400 >gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Krokinobacter diaphorus 4H-3-7-5] gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Krokinobacter diaphorus 4H-3-7-5] Length = 424 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 128/441 (29%), Positives = 209/441 (47%), Gaps = 36/441 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NG+ D+RS+ + + ++KG +++G+ F A++ GA L V++ ++ Sbjct: 14 NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYTVL----- 68 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R II +TGS GKTTTKE++ LS T A G+ NNHI Sbjct: 69 VDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNLNNHI 128 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + GI E+G +H GEI L + +P+ IT AHL F G E + Sbjct: 129 GVPLTLLSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188 Query: 208 SAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+E++ L + F+N D A GI T+ +FG +++ K+ Sbjct: 189 KGKSELYNYLRDNEEMAFINDTDKL-----QVEKATGI-TLQTFGSTES------KYPIS 236 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++L K+ + IG + N+ + + + + +D + + P R Sbjct: 237 LVDGSESLKLSFKNTTINSQLIGIYNYSNIAVAIAMGTYFDVSIDQIKSGIEEYIPANNR 296 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + + +I ++YNANP SM AA+ L + IA +G+M E+G S+ Sbjct: 297 SQ----IIKKDSYRIILDAYNANPTSMAAALENLKATNT----TTIAFIGNMFEVGVTSK 348 Query: 387 SFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H +DLA LS I V+ G ++P+ ++ E + S + + Sbjct: 349 AEHQAMLDLAHHLS---IDQVYAIGPDFCT---SVPQ-VNQEVYEDYNAFAKAYSSKIPN 401 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 G V++K S R++NLL Sbjct: 402 GATVLIKGSRGMKMERILNLL 422 >gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1] gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1] Length = 611 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 200/403 (49%), Gaps = 36/403 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI +G+ ++ + KGA LV+ + + V Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTNIKDK-----RVV 253 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YNNH Sbjct: 254 KVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNH 313 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + + Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNV 373 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ E ++K T F+ DD + LG + G ++N D+++ ++ Sbjct: 374 FKAKTELLEFVDKKNT-FVCGDDEY----------LGKLDVNKVGFNENNDYKIESYEFS 422 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323 ++ S + L GK E+ +G H N + + + + + ++ +K + + + Sbjct: 423 NKGS--KFVLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM- 477 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 478 -----RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGE 529 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 ++HID+ L I ++L G + D ++ Y Sbjct: 530 NEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 572 >gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Porphyromonas gingivalis ATCC 33277] gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 126/393 (32%), Positives = 194/393 (49%), Gaps = 20/393 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR P FFA+KG +DG+ F A++KG L VV+ V + VD Sbjct: 16 VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDERYLL----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R +I ITG+ GKTTTKE++ LS+ G+ NNHIGV Sbjct: 72 DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + I E+G + G+I LT + RP+ +IT I AHL F +E + Sbjct: 132 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNFGLITNIGRAHLQGFGSLEGVRRT 191 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ + G I FLN+DD + G++++ S+G S AD +R + Sbjct: 192 KEELYDFIRAEGGILFLNFDDDTL-----IDMSQGLQSV-SYGTS--ADATVRGLIVANN 243 Query: 269 QSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ + L S E V + +G + N L + + + AL+ + P R Sbjct: 244 TPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNR 303 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + +LI ++YNANP SM+AA+ + H + + +LGDM E+G S+ Sbjct: 304 SQWIETERGN---SLIVDAYNANPVSMRAALDNFDSL--HTDKPLVLILGDMNELGAESK 358 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 H+ L E ++ + L G + AL D+ P Sbjct: 359 REHMALLERINTGRYRQILLCGPCLTALADSFP 391 >gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] Length = 456 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 114/356 (32%), Positives = 178/356 (50%), Gaps = 22/356 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F A+ G ++D HDF+ + KGA +V +D+ G +P D L Sbjct: 34 DSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIVSRSDLAGVAGCFFVP-----DTL 88 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNHIGV 149 AL ++A A R + ITGS GKTT KEML L + A G++NNHIG+ Sbjct: 89 HALQQMAAAWRKAVNPFVFGITGSSGKTTVKEMLAAVLRAKFGADAVLATAGNFNNHIGL 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIAS 208 PLTL + + + E+GM+H GE+ LT + P A++ AH+ F+G+ +IA Sbjct: 149 PLTLLNLRGHHRYAVIEMGMNHFGELAALTRIAAPDTALVNNAMRAHIGCGFNGVADIAR 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK+EI++GL + G L +D+ + +A + G+KT+ +FG ++ D Sbjct: 209 AKSEIYQGLPENGVALLPAEDANLPVFQAACN--GLKTL-TFG-AEQGDIHAENIDLQPL 264 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S ++ + + V G H N + + L+ F +GR + Sbjct: 265 SSTFDLVYGTERVRVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGLAAFGNIKGRLQ 324 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGE 383 + R N ++D++YNANP SMKAA+ VL+ Q +P R+ V+GDM E+GE Sbjct: 325 QKRGIRNA---LILDDTYNANPDSMKAALDVLAKQPAP-----RVFVMGDMGELGE 372 >gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] Length = 452 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 16/369 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G LN D++ + +A +G + ++ F + N+DF + Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q +++V+ G H N L + + AD+ L+ G Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLQAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R +Q L+D+SYNAN SM AA+ VLS++ G R V+GDM E+G S Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRTMVVGDMAELGAES 368 Query: 386 QSFHIDLAE 394 + H ++ E Sbjct: 369 AACHREVGE 377 >gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] Length = 468 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 209/447 (46%), Gaps = 36/447 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VFG 87 +DSR++ P + F A +G DGH +I A+ +GA +V+ V+ P +FG Sbjct: 36 VDSRAVEPGDGFAAFQGESTDGHLYIESALARGASVVLAERGRVSEKLPAQWPQVTFIFG 95 Query: 88 VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 AL +LA A RL + A+TGSVGKTTT+ L +S+ ++T+A G+YN Sbjct: 96 HRSET-ALAELARAYLVRLPDLKHVAAVTGSVGKTTTRSFLARIMSASQRTHAASGNYNT 154 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG + + P DV + E+G +H GEI + P A IT +APAHL F ++ Sbjct: 155 LIGCSVAVLSAPFDVQCLVLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQG 214 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--W 263 + KA IF G + LN D+ L ++ + + +FG+ + F+ + W Sbjct: 215 VLREKAGIFGGGRLKDAV-LNADNPLLAELASQINT----PVTTFGRDGSLSFEDDRLEW 269 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + S + G + V G H + L + + A++ F Sbjct: 270 DEGFKVS-ARLCYSGDRVPVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESL 328 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GRG+ R L G F LIDESYNA+P SM AAI L ++ GR+ A+LG M E+G Sbjct: 329 PGRGEVVR--LQNGAF-LIDESYNASPKSMTAAIQSLGEVQIR--GRKFALLGSMGELGA 383 Query: 384 LSQSFHIDLAEVLSLYNI------SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 + + H + EV W SG A + L V + + GL Sbjct: 384 GASAAHQQVMEVARGQGFDWWGAYGSDWQSGAK--ATDNLLTDWEEVRRA--VAGL---- 435 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 +L GDV++VK S++CG RL+ L Sbjct: 436 --NLRSGDVLLVKGSHACGLERLVKEL 460 >gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] Length = 427 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 132/441 (29%), Positives = 208/441 (47%), Gaps = 22/441 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ID+R + F A+KG +DGHDF AV GAG ++V+ ++ + P V Sbjct: 1 MTIDTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKRLL-----VGAPQLVVK 55 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL + A R + A ++A+TGS GKT+ KEM+ L G++NN IGV Sbjct: 56 DTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNNDIGV 115 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 116 PLTLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAKA 175 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF GL GT +N D + + + H K ++ F +++ DF + Sbjct: 176 KGEIFAGLPANGTAIINADSNDWPHWQEMLHN---KRVWYFSPRGAEDIDFYASDVRITP 232 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + ++ + G H N L + + AD+ + L+ GR Sbjct: 233 QATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQGLAQLQAVPGR- 291 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + L+ G L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ + Sbjct: 292 -LFPIQLSAGKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVLVVGDMAELGDTAVD 345 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGD 445 H + E + V G L DA H T+ L ++ ++ Sbjct: 346 CHRQVGEAARQAGVDKVLSVGSLSQTLSDASGNGEHFQDKNTLAARVSELLLEHPVI--- 402 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 V++K S S ++ L E Sbjct: 403 TVLIKGSRSAAMENVVRALQE 423 >gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54] gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] Length = 457 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 216/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q+ + ++ +A + + G Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE-QVLDLPVTGKYNATNAMIASYVALQEG 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 290 VSE---EQIHQAFQDLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENE 455 >gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 452 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 16/369 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G LN D++ + +A +G + ++ F + N+DF + Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q +++V+ G H N L + + AD+ L+ G Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLQAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R +Q L+D+SYNAN SM AA+ VLS++ G R V+GDM E+G S Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRTMVVGDMAELGAES 368 Query: 386 QSFHIDLAE 394 + H ++ E Sbjct: 369 AACHREVGE 377 >gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens str. 13] gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium perfringens str. 13] Length = 453 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGNFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 457 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 226/468 (48%), Gaps = 25/468 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ H++ + IG+ ++ I+I+S I Q F A+ G +DGHDF A+ G Sbjct: 4 FSLHEIAPVLNAKYIGM--DLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++VN ++ L +P V D AL LA R + + +IAITGS GKT+ KE Sbjct: 62 AQALLVNHHIL-----LDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M T L T A G++NN IGVP+TL R+ +F I ELG S GE+ L+ +V Sbjct: 117 MTTSILKECGHTIATQGNFNNMIGVPITLLRLTKKNNFAIIELGTSSPGELVQLSKIVAA 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++A++ + PAHLS F + +I K +IF L+ GT +N D L + L Sbjct: 177 NVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGIINADSHALSLWRK---PLKG 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGI 302 K+++ F N SE++ + L + VV +G H N L + Sbjct: 234 KSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALAASAL 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + A++ + L + K G+ + L +G L+D++YN+N SM +AI VL+ Sbjct: 294 AFSVGANLSEVVYGLE--NIKTLPGRLFPIILGEGKL-LLDDTYNSNVGSMISAIHVLTT 350 Query: 363 ISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G RI V+ DM E+G+ S +H + ++++ NI+ + G + + Sbjct: 351 M----PGYRILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILTIGSVSCCISKICGKG 406 Query: 422 IHVHYSETMDGLFLFIQS--SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H + L ++I+ S+ + V+VK S ++IN + +E Sbjct: 407 KHF---RNKNKLIIYIKQMLSIHNSISVLVKGSRGFKMEQIINAIRDE 451 >gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] Length = 462 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 189/396 (47%), Gaps = 24/396 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++T L G IG P+ V+GIS DSR+I P E F ++G +DGHD++ + Sbjct: 1 MFTPEQLTTITHGRLIG--PETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTE 58 Query: 63 KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + + + N + ++ V D L AL LA A R R T+I +TGS GKTT Sbjct: 59 RRIQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML L + + G+ NN IG+P L ++ + + + E+GMS GEI L + Sbjct: 119 TKEMLAAILDQVDQGLKTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEPGEIDRLAEI 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237 P I ++ PAHL + +E +A AK E+ + ++ G +N DD S + A Sbjct: 179 ACPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRIASLHQNPSA 238 Query: 238 KSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + GIK ++ A + + +K + + +E++L+ +G H N Sbjct: 239 RRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLK---------ALGQHNIYNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + L ++T + L F P GR + N+ LID+SYNANPAS AA Sbjct: 290 LAAAAGLLELVG-LETIAEGLEAFVPYTGRFHLETLSNNR---LLIDDSYNANPASCAAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 ++ L I G R LGDM E+G H L Sbjct: 346 LATLQGIK--GNRRAFVALGDMLELGRDELELHRQL 379 >gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 453 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 216/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPSAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLILGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 60/472 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84 DSR ++ + F A+ G + DGH F+ ++G + +V+ D A+ L + Sbjct: 31 DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRTEILNQGWATADELDQLT 90 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134 V V D AL +LA A +LR++A +I ITGS GKTTTK++ LS+ Sbjct: 91 VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T A + S+NN +G+PLT+ V ++ + E+G S G+I +LT + +A++ + Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL ++S +E +A+ KA I E L +G LN DD E + ++ + +Y F K Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266 Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301 N D +L + + S + VQLQ + HH A + G Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 323 Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I ++L+ + +++ H +G LID++YNANP S++AA+ V Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370 Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415 I+ G RR+ VLGDM E+GE S H ++ + IS + G H+ + Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 AL R H +Q + GD+++VK S+ G ++L + E Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLAQEIEER 479 >gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] Length = 471 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 141/449 (31%), Positives = 209/449 (46%), Gaps = 36/449 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVDD 90 DSR P F A G DGHDF V VA +G+ + +P VDD Sbjct: 34 DSREAGPGSLFVAFAGERVDGHDFAAAVVG---------AGAVAVLGTRPVGVPAIVVDD 84 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V AL LA R AT++A+TGS GKT+TK+++ L T GS NN IG+P Sbjct: 85 VQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLP 144 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LT + F + E+G +G IR+L L P I ++ + AH+ F G E+IA AK Sbjct: 145 LTALSATEETRFLVLEMGARGIGHIRYLAGLTPPKIGLVLNVGSAHIGEFGGREQIAQAK 204 Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC- 266 E+ E L + GT LN DD + + +++ A + FG+S AD + Sbjct: 205 GELVEALPSEAEGGTAILNADDPYVRAMASRTKA----KVILFGESGEADVSAENVRLTD 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + Q + + +V G H N L + L D ALS + G Sbjct: 261 TGQPAFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIAVALS----EAGS 316 Query: 327 GKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383 R+R + + T+++++YNANP SM+AA+ L+ + G+GRR AVLG M E+G+ Sbjct: 317 LSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAVLGKMAELGD 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 + + H + + N+S + G + A + VH S+ + L + Sbjct: 374 EALAEHDAVGRLAVRLNVSKLVAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDL-L 432 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +S L GDVV+VK+S S G + LLE Sbjct: 433 RSELRPGDVVLVKASRSVGLEGVAQALLE 461 >gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 464 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM A ++K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEM---AAKILQKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + AD+ L Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + +G+ Y +N ID++YNAN SMK+A+SVL RI +GD Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S++ H +A+ + N+ V Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395 >gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] Length = 509 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 145/506 (28%), Positives = 229/506 (45%), Gaps = 60/506 (11%) Query: 11 LQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65 + AI G S+ V P V G + DSR + F A+ G DGHDF A+++GA Sbjct: 9 IAAITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVA 68 Query: 66 ---------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA 108 ++V + + + ++ D+ V+GAL+ LA V +RL ++ Sbjct: 69 VLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQ 128 Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 I+ +TGS GKT+TK++L + +T A GS+NN +G+P T R F + E Sbjct: 129 GLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLVAE 188 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223 + +G IR LT + P + V+ + AHL F E IA AK E+ E L G Sbjct: 189 MSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEALPAAADGGVA 248 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGK 279 LN DD F + ++ A + YS + + AD Q + + S+ + Sbjct: 249 VLNADDPFVASMAPRTQAKVV--YYSANRPQAADAQYYATDIELDDVARPSFTFHAPGVE 306 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 M + G H N L + + + V+ + A ++ + R + Sbjct: 307 PMSIKLQVFGKHQVSNALAAA--AAAIESGVEPTVAARALSGHQTSSAHRMDVRTRRDGV 364 Query: 340 TLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+ID+SYNANP SM AAI+ L+ S + R IAVLG+M E+G + H L VLS Sbjct: 365 TVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRILGSVLSK 424 Query: 399 YNISHVWL--SGFHVLALKDALPRSIHVHYSET------------MDGLFLFIQSSLVD- 443 Y+++H+ G H +A+ +A H H +T ++ + + + D Sbjct: 425 YHVNHLVAVGEGAHTVAMVEAA----HAHGIQTELCPDIEAATAAVENILRVAPAGVEDW 480 Query: 444 -----GDVVVVKSSNSCGFYRLINLL 464 DVV+VKSSN+ +R+ L Sbjct: 481 SARAAKDVVLVKSSNAQRLWRVAEQL 506 >gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. WH 7803] gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. WH 7803] Length = 471 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 211/453 (46%), Gaps = 37/453 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR++ P F ++G +DGH F+ AV++GA V +D ++ + + V Sbjct: 32 VCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAHAVPD-GLLHWKVA 90 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A +LA R + A ++A+TGS GKTTT+E++ AL+ + A + NN IGV Sbjct: 91 DTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELIRSALAPLGDVQASDSNNNNDIGV 150 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + E+GM GEI L+ P IAVIT I AH+ IASA Sbjct: 151 PLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCAEPEIAVITNIGTAHIGRLGSRAAIASA 210 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI L G + + D+ E ++ I + G + + Sbjct: 211 KCEITAALSPRGVVVIPAGDALLEDALSRCWTGRILRVSLEGDEPEGGPDVSGLTSAALP 270 Query: 270 SWMEVQL-QGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + V + Q + + G+ G H A+N ++ L + S L + + ++A+ V Sbjct: 271 APDLVGVFQPEDQSLAFQGLRFRCPLEGRHNARNFMLALAVASELEVPLHS-LEAMDVAM 329 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P GR KR L+ G +L+DE+YNA+P ++ AA+ +L+ H GRR AVLG M E+ Sbjct: 330 PG-GRNKR----LSMGGVSLLDETYNASPEAVLAALELLA----HQPGRRFAVLGTMLEL 380 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD----------ALPRSIHVHYSETMD 431 G S H +A+ + L G V+A D +L R V E Sbjct: 381 GSRSVELHRRVAQ-----RAVDLKLDGLVVVAGGDEGDVMEATACSLSRFTRVQTPEDA- 434 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ L GD V++K+S RLI +L Sbjct: 435 --ALPLRGWLKPGDTVLLKASRGVALERLIPVL 465 >gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] Length = 452 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 214/448 (47%), Gaps = 26/448 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I F A+ G +D HDF AV+ GAG + +V+ I +P Sbjct: 24 IESVSTDTRAIDAGALFVALVGERFDAHDFAAQAVESGAGAL-----LVSRIVESDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L + +AITGS GKTT KEM+ + + G++NN Sbjct: 79 LVKDTKLALGQLGALVHQSCQTPTVAITGSAGKTTVKEMVASIMEQKGRVLFTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D+ + E+G +H+GEI + T+LV+ +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTPEDDYAVIEMGANHIGEIAYTTNLVKADVALVNNVAAAHLEGFGSLDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 AK EI++GL+ +N D + E + L K + F +ADF K Sbjct: 199 KQAKGEIYQGLKPGSVAIINLDSNGGEYWHS---VLADKLVKRFSVMDSDADF-FAKDIS 254 Query: 266 CSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E L +V + GI G H N L + L A+++ L+ Sbjct: 255 LNSSGEAEFTLVSPVGDVAIKLGIVGQHNVANALAATALALELGANLEMVQSGLAQLSKV 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + LN LID+SYNA+ +MKAA +L+ + G R +LG+M E+G+ Sbjct: 315 KGRVEVIE--LND-TIKLIDDSYNASVPAMKAAADLLASFT----GIRWLILGNMAELGD 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV- 442 S + H + E + + HV G A+ D +H+S + + +I+ L Sbjct: 368 ESLALHRQVGEHAAPFKFEHVLTYGADAKAISDECGG---IHFS-SHQSMIDYIKQHLAQ 423 Query: 443 --DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ++VK +NS G ++ + E + Sbjct: 424 HQEQQTLLVKGANSAGMSKVATAVKEMY 451 >gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 456 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 217/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 7 LNLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKG 66 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 67 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 126 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + + Sbjct: 186 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGSLPSAEYKI 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 246 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L+ E R G F+++++ YN++P ++K+AI V+ Sbjct: 301 AKELGVSFEEMKRGLNNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 356 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 357 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 413 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 414 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 456 >gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein [Mariprofundus ferrooxydans PV-1] gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein [Mariprofundus ferrooxydans PV-1] Length = 452 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 214/461 (46%), Gaps = 32/461 (6%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+ A G + +P+ +V+ I+ D+R + F A++GPH+DGH F L+ Sbjct: 7 DIQCATGGEWLHGMPE-WVSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADAACALI 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLT 127 M SL +P V+D L AL +A A R++ K T++AI+GS GKT+ + +L Sbjct: 66 GDARGM-RYWESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTVVAISGSFGKTSLRSLLQ 124 Query: 128 IALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 S++ A + NN IGVP TL +P D + E G+S +GE+ L+ +V+P + Sbjct: 125 HGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLALIECGISEVGEMERLSAIVQPDV 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIK 245 AV+T I AH G+ + KA +F L TG + +L + S + Sbjct: 185 AVLTGITNAHGEGLGGLAGVVEEKAALFSHL-NTGAWCALGEGVADQLGRHHISQPADLL 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S D Q +++ EQS +E+ L + H H+A ++M L + Sbjct: 244 DVEQSELSWRLDGQCLHFQRGDEQSQIELSLPAR-----HWATNMHLAACIIMRL----M 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A ++ +AL+ + G R + G ++D+SYNANP SM+AAI L + Sbjct: 295 PEARLNDVAQALASWQAPAG---RMQVRTGSGGCKVLDDSYNANPVSMQAAIDTLVAMP- 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIH 423 G RIAVLGDM E+GE S H L + I ++L G H LA R Sbjct: 351 ---GCRIAVLGDMAELGEASLGAHTG----LDVSGIDKLYLVGPKMHALAAGSGTARWYP 403 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H + + S V+VK S S ++N+L Sbjct: 404 DHRAAAAS----LSRESFGPDATVLVKGSRSMALETVVNVL 440 >gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] Length = 452 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 119/379 (31%), Positives = 184/379 (48%), Gaps = 16/379 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L T G+ NN Sbjct: 79 VVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQ 265 A AK EIF GL G LN D++ + L +S +G + ++ F + +DF Sbjct: 199 AKAKGEIFSGLPANGIAILNADNN--DWLNWQS-VIGDRKVWRFSPNLATSDFSATNIHI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++ ++V+ G H N L + + A + L+ G Sbjct: 256 TSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASALAMAVGAPLQAIKAGLAKLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R A NQ L+D+SYNAN SM AA VLS++ G R+ V+GDM E+G+ + Sbjct: 316 RLFPVHLAENQ---LLLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMAELGDEA 368 Query: 386 QSFHIDLAEVLSLYNISHV 404 ++ H + E I V Sbjct: 369 EACHQQVGEAAKAAGIDKV 387 >gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] Length = 466 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 212/440 (48%), Gaps = 33/440 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+++G V++ A G++ VD Sbjct: 55 VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGTIL-----VD 109 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L AL +LA R + K +I ITG+ GKTTTKE+++ LS T G++NNHIGV Sbjct: 110 NCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNNHIGV 169 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ L H+ P +IT + AHL F E + Sbjct: 170 PLTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNVGKAHLQGFGSFEGVIRT 229 Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L G TIF+ ++ + + A G+ T +G++ + + CS Sbjct: 230 KGELYDFLRAKGGATIFIQNENPYLNGI-----AEGL-TCVRYGQTAGL-YVSGELISCS 282 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +G S EV H IG + NML I D AL+ + P R Sbjct: 283 PFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDDISSALASYLPHNNRS 342 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 + A N+ LI ++YNANP SM AA+ QI +PH ++ +LGDM E+GE S+ Sbjct: 343 QLKETADNK----LIVDAYNANPTSMMAALKNFRQIEAPH----KMVILGDMKELGEASR 394 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + L V L G A + HV D + I+ G Sbjct: 395 EEHQKVVDYLKECGFDRVVLVGPEFAAATHSYQTFQHV------DEVLADIRMHKPQGYY 448 Query: 447 VVVKSSNSCGFYRLINLLLE 466 +++K SNS ++LLLE Sbjct: 449 ILIKGSNSMK----LSLLLE 464 >gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] Length = 482 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 207/455 (45%), Gaps = 21/455 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + ++ DSRS+ P + F A+ G +D HDF+ V +GA V+V+ A + Sbjct: 26 PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSG 85 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D AL +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 86 VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 146 AGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255 +E +A+ A + L G D + + L +A A G + + FG Sbjct: 206 MVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A ++ ++VQ G +G H A+N L + + Sbjct: 263 AVSA--TVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATACALAAGIAPEVIAQ 320 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ALS F P +GR +R + ++ G ++D++YNANP S++AAI L+ + R VL Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----APRWLVL 373 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G +FH ++ I V +G + DA H++ + + L Sbjct: 374 GDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ G V+VK S R+++ L+ + PA Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] Length = 454 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 218/471 (46%), Gaps = 33/471 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + Q ++G I GIS DSR + P F A+KG ++D H F+ K Sbjct: 4 TLSQIRQWVRGSRI--TADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKV 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V + V + +P V D A+ ++A R R ++ +TGS GKTT KEM Sbjct: 62 AAVLV--ERVPE--NYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEM 117 Query: 126 LTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + + A G++NN +GVPLT+ R+ + ELGM+H+GE+ +L + + Sbjct: 118 IASIFRTAWGENCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQ 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++ H +E +A + L + G DD++ L +A G Sbjct: 178 PTVGLVNNAQREHQEFMQSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWAG--YAGG 235 Query: 244 IKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +T+ +FG SK+AD +++ K K + + + L G+ +E+ G H +N + Sbjct: 236 RQTM-TFGFSKDADVSAAYRIEKGK-----TRLVMSLAGEQVEMSLSTSGRHNVRNAMAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L F P GR +R + A N LID++YNANP S++AAI V Sbjct: 290 AACCLAAGIGKLEIAEGLEKFVPVRGRLER-KTAFNGAL--LIDDTYNANPDSVRAAIDV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + G I VLGDM E+GE + FH ++ I+H + G +A Sbjct: 347 LADMPSDG----IFVLGDMGEVGEEGERFHAEVGAYARERRINHFFTFGEMARFASEAYG 402 Query: 420 RSI-HVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEF 468 + H E M+G+ +LV D+ ++VK S R++ L+ + Sbjct: 403 KEARHFMDLEEMNGVL----KALVKPDMAILVKGSRFMRMERVVEQLMNDM 449 >gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 138/475 (29%), Positives = 216/475 (45%), Gaps = 37/475 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L I+ G + I IDSR+ + F AIKG ++DGH+F+ + K Sbjct: 5 FFEIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNK 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV+ M + + P + V D L A KL + R + ++AITGSVGKTTTK Sbjct: 65 GVKSVVIKEGMQKLLPD-NFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L+ + K ++NN IGV LT+ + + E+GM LG+I L+ + Sbjct: 124 EMVGEVLNKLGKIKLSHANFNNEIGVGLTILATDKEDKVLVLEMGMRGLGQIENLSKYSK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-----SFFELLKAK 238 P IAVIT I AH+ + I AK EI + L G + + +D + E K + Sbjct: 184 PDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + I + S D LR + S ++ + ++ E+ G+H A N L+ Sbjct: 244 VTKVELLNIENQNDSFKKDNNLRGFYNPSNKT---ILIEENIFEISFE--GFHNASNFLL 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L D ++ K F GR K + T+ DESYNA+P S+KA I Sbjct: 299 AYAVAKELGIDFESFNKF--DFVSLGGRNKILKSVKT----TIYDESYNASPESVKACIK 352 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + P + + G M E+GE S+ FH E+ +L N S + L + D Sbjct: 353 TLLE-KPR---NKFFIFGSMQELGEESEKFH---KEIFNLINNSDIE----KCLFICDKK 401 Query: 419 PRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + I+ +Y + + I S GD +++K S S ++I L+ Sbjct: 402 NKKIYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRSWQLEKIIELI 456 >gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17545] Length = 457 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 141/476 (29%), Positives = 220/476 (46%), Gaps = 38/476 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLAPAAPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELGITDLVERKDSLTFKVNFLE---QALDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V++ + I+ L+ H + R + ++ A N ++ + YNANP +MK + Sbjct: 283 YVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETF 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 340 SAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQ 399 Query: 421 SI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 400 MFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84 DSR ++ + F A+ G + DGH F+ ++G + +V+ D A+ L + Sbjct: 31 DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRAEILNQGWATAEELDQLT 90 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134 V V D AL +LA A +LR++A +I ITGS GKTTTK++ LS+ Sbjct: 91 VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T A + S+NN +G+PLT+ V ++ + E+G S G+I +LT + +A++ + Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL ++S +E +A+ KA I E L +G LN DD E + ++ + +Y F K Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266 Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301 N D +L + + S + VQLQ + HH A + G Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNALAAAAIAHVAGMTP 323 Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I ++L+ + +++ H +G LID++YNANP S++AA+ V Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370 Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415 I+ G RR+ VLGDM E+GE S H ++ + IS + G H+ + Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 AL R H +Q + GD+++VK S+ G ++L Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 472 >gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 483 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84 DSR ++ + F A+ G + DGH F+ ++G + +V+ D A+ L + Sbjct: 31 DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRAEILNQGWATAEELDQLT 90 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134 V V D AL +LA A +LR++A +I ITGS GKTTTK++ LS+ Sbjct: 91 VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 150 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T A + S+NN +G+PLT+ V ++ + E+G S G+I +LT + +A++ + Sbjct: 151 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 210 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL ++S +E +A+ KA I E L +G LN DD E + ++ + +Y F K Sbjct: 211 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 266 Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301 N D +L + + S + VQLQ + HH A + G Sbjct: 267 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 323 Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I ++L+ + +++ H +G LID++YNANP S++AA+ V Sbjct: 324 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 370 Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415 I+ G RR+ VLGDM E+GE S H ++ + IS + G H+ + Sbjct: 371 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 427 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 AL R H +Q + GD+++VK S+ G ++L Sbjct: 428 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 472 >gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 43063] Length = 480 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 60/465 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-------ASIGSLS-IP 84 DSR ++ + F A+ G + DGH F+ ++G + +V+ D A+ L + Sbjct: 28 DSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVAIVSHDRTEILNQGWATAEELDQLT 87 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKAT--------IIAITGSVGKTTTKEMLTIALSSIK 134 V V D AL +LA A +LR++A +I ITGS GKTTTK++ LS+ Sbjct: 88 VLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKG 147 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T A + S+NN +G+PLT+ V ++ + E+G S G+I +LT + +A++ + Sbjct: 148 ATVAPVASFNNEVGLPLTVLEADVSTEYLVLEMGASQPGDIAYLTDIAPLDVALVLMVGV 207 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL ++S +E +A+ KA I E L +G LN DD E + ++ + +Y F K Sbjct: 208 AHLESYSSVEALAAEKATILENLGPSGMAILNADDPRVEAMSGRTSG---RLMY-FSTKK 263 Query: 255 N-----ADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG--- 301 N D +L + + S + VQLQ + HH A + G Sbjct: 264 NTPVRITDLRLDEAARGSFLLHTPEGSAPVQLQ---LLGAHHVTNAVAAAAIAHVAGMTP 320 Query: 302 --IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I ++L+ + +++ H +G LID++YNANP S++AA+ V Sbjct: 321 AEIATVLSNATPVSEHRMNLVHLADG-------------VDLIDDAYNANPDSVRAALDV 367 Query: 360 LSQISPHGEGRRIA-VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALK 415 I+ G RR+ VLGDM E+GE S H ++ + IS + G H+ + Sbjct: 368 ---IAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVLLTVGPMAKHIESAY 424 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 AL R H +Q + GD+++VK S+ G ++L Sbjct: 425 SALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKL 469 >gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] Length = 457 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 217/471 (46%), Gaps = 32/471 (6%) Query: 8 HDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H++ Q + + I I + DSR I + F +KG DGHDFI A + GA Sbjct: 6 HEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGAA 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK+ML Sbjct: 65 VTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDML 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 119 AHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPKT 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++T + AHL+ F EIA K +I +G+ + D + L K Sbjct: 179 AIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPVVEDYLPTD------KK 232 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + FG+ A+ ++ + + + +++++ G Y+ M+ + V++ Sbjct: 233 VVRFGQG--AELEITDLVERKDSLTFKANFLNQALDLPVTG-KYNATNAMIASY--VALQ 287 Query: 307 TADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + I+ + H + R + ++ A N ++ + YNANP +MK + S I Sbjct: 288 EGVSEEQIRQ-AFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAMKLILETFSAIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 345 NEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIG 404 Query: 423 HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 405 HVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKGSNSMNLAKLVESLENE 455 >gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] Length = 473 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 168/367 (45%), Gaps = 17/367 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + IDSR F AI+G DGH FI +++GA V D+ G + Sbjct: 28 VSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGALCAVSEEDL----GDVPYSYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL +A R ++ I+GSVGKT+TKEM+ LS G++NN Sbjct: 84 KVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSQKYSVLKTEGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G+S E+ L + RP I V+T I AH+ N + I Sbjct: 144 IGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+F + + GTI LN DD + L+ S GI +Y FG ++ F Sbjct: 204 LKAKTEMFAYMNENGTIILNGDD---DKLRGYSPENGITPVY-FGLDESCGFHAENISGK 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S H I G HM N L + L + P G Sbjct: 260 GLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAG 319 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R FT+ID+ YNANP SMKA++ VL+ + R+ A+LGDM E+GE Sbjct: 320 RNNLIRAP----HFTIIDDCYNANPTSMKASLDVLA----FADTRKAAILGDMFELGENE 371 Query: 386 QSFHIDL 392 + H ++ Sbjct: 372 KQMHREV 378 >gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 456 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 214/442 (48%), Gaps = 31/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + ++ + G+ + VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL--SERPVAEGAYIL----VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLTTTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ Sbjct: 205 IADGLRKDGLLIVPADKIINEFLPADCK------LVRFG--PDADIFLTRLEERKNSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++V A +A S R + ++ Sbjct: 257 ECNFLEERIDLPVTG-KYNATNAMIAAYAALQEGVSEVAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHY------SETMDGLFLFIQSSLV 442 L+ ++ ++L G + AL D + I+ V Y + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDIEALYD-YAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLT 430 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 D V++K SNS +L+ L Sbjct: 431 PADQVLLKGSNSMNLAKLVEDL 452 >gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102] gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. WH 8102] Length = 449 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 203/447 (45%), Gaps = 27/447 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V I DSR + F + G +DGH F+ G VV+ D A + S Sbjct: 22 PDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVSLDWTAPLPS-G 80 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + VDD L A +LA+ R + ++A+TGS GKTTT+E++ L+ + A G+ Sbjct: 81 LLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQASDGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN IGVPLT+ D + E+GM GEI L+ P +AVIT I AH+ Sbjct: 141 NNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAHIGRLGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADF--Q 259 E IA+AK EI L G + + D E L A ++ AD Sbjct: 201 REAIATAKCEITAALHPQGVVVIPAGDPLLEQALAAVWQGRVLRVRLEDDPDITADLIGA 260 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 R + +++ + + L G+ H A+N+L+ L + S L D +A + L V Sbjct: 261 ARNDRLLLDEASIPLPLDGR-----------HNARNLLLALAVGSHLGVDPASAAQ-LQV 308 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR +R L QG TL+DE+YNA+P A L P GRR AVLG M Sbjct: 309 NIPG-GRNRR----LQQGGLTLLDETYNASP-EAVLAALDLLADQP---GRRFAVLGTML 359 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 E+G+ S H +A + + V L G A+ + + + T + + + Sbjct: 360 ELGDRSIELHQQVAARAAALKLDGVVLVDGGDEGQAMANVVSCLDRLALVATPEAAAVPL 419 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 L GDVV++K+S RLI LL Sbjct: 420 GQWLQAGDVVLLKASRGVALERLIPLL 446 >gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] Length = 483 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 168/367 (45%), Gaps = 17/367 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + IDSR F AI+G DGH FI +++GA V D+ G + Sbjct: 38 VSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGALCAVSEEDL----GDVPYSYI 93 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL +A R ++ I+GSVGKT+TKEM+ LS G++NN Sbjct: 94 KVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTSTKEMIASVLSQKYSVLKTEGNFNNE 153 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G+S E+ L + RP I V+T I AH+ N + I Sbjct: 154 IGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGI 213 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+F + + GTI LN DD + L+ S GI +Y FG ++ F Sbjct: 214 LKAKTEMFAYMNENGTIILNGDD---DKLRGYSPENGITPVY-FGLDESCGFHAENISGK 269 Query: 267 SEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S H I G HM N L + L + P G Sbjct: 270 GLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAG 329 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R FT+ID+ YNANP SMKA++ VL+ + R+ A+LGDM E+GE Sbjct: 330 RNNLIRAP----HFTIIDDCYNANPTSMKASLDVLA----FADTRKAAILGDMFELGENE 381 Query: 386 QSFHIDL 392 + H ++ Sbjct: 382 KQMHREV 388 >gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] Length = 452 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 136/444 (30%), Positives = 217/444 (48%), Gaps = 34/444 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N +S D+R+I F A+ G +D H F AV GAG ++V+ + S +P Sbjct: 24 INSVSTDTRNIEQGALFVALVGERFDAHHFTHQAVDSGAGALLVSKPV-----SGDVPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L +AITGS GKTT KEM+ + + G++NN Sbjct: 79 VVKDTKLALGQLGALVHQTCLTPTVAITGSCGKTTVKEMIASIMEQKGQVLFTAGNFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R + D + ELG +H+GEI + T LV+P +A++ +A AHL F ++ + Sbjct: 139 IGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTRLVQPDVALVNNVAAAHLEGFGSMDGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 AK EI++GL+ +N D D + E+L K +KT +S S +ADF Sbjct: 199 KQAKGEIYQGLKAGSVAIVNLDSNGGDYWQEVLADKL----VKT-FSLTDS-SADFTASD 252 Query: 262 -KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + E S++ QG+ ++V IG H N L + L A ++ L+ Sbjct: 253 ISLNEIGEASFVLKTPQGE-IKVTLGIIGQHNVANALAATALALELGASLEMIQSGLASL 311 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + +GR + LNQ LID+SYNA+ +MKAA +L+ +G R +LG+M E Sbjct: 312 NKVKGRVELIE--LNQQ-IKLIDDSYNASVPAMKAAADLLAGF----KGVRWLILGNMAE 364 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439 +G+ S + H + + + + +V G A+ + R H S + FI+ Sbjct: 365 LGDESLALHRQVGQHAAPFKFEYVLTFGADAKAISEECGGRHFEDHQS-----MIDFIKQ 419 Query: 440 SL---VDGDVVVVKSSNSCGFYRL 460 + ++ ++VK +NS G ++ Sbjct: 420 QIEQHLEPQTLLVKGANSAGMSKV 443 >gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 484 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 130/474 (27%), Positives = 217/474 (45%), Gaps = 34/474 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ QA+ + + + ++ DSR I + F +KG DGHDFI A + G Sbjct: 31 TIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 89 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 90 ATVTLSEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKD 143 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 144 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 203 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 204 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIEDYLPTD------ 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303 K + FG A+ ++ + + + G+++++ G Y+ M+ +G+ Sbjct: 258 KKVVRFGSG--AELEVTDLIERKDSLTFKANFLGQALDLPVTG-KYNATNAMIAAYVGLQ 314 Query: 304 SILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ + + A + L + + ++ A N ++ + YNANP +MK + S Sbjct: 315 EGVSEEQIRQAFQNLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILETFSA 368 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I + G++IAVL DM E+G S H + LS + + G + L + Sbjct: 369 IPANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIFYGEDIAELAQLASQMF 428 Query: 423 ---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 429 PIGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 482 >gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 1005 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 131/473 (27%), Positives = 225/473 (47%), Gaps = 29/473 (6%) Query: 9 DLLQAIQGHSIGIVP----QGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++++A +GH + P Q V+ + IDSR + E F A+KG + DGH FI +K Sbjct: 537 EVVEAGRGHGDSLPPSQPPQEMVSPVVVIDSREVRGGELFIALKGENADGHCFIGTVFEK 596 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA +V+ GS+ P DD + L +LA R + ++AI GS GK Sbjct: 597 GASWAMVSRQWYEEQGSVDPPPGKGFIVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGK 656 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM+ L + + + G+ NNH+GVPLTL ++ D D + E+G++H GE+ L Sbjct: 657 TTTKEMVASVLGTGFRVHMSEGNRNNHLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLA 716 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAK 238 + P A++T I HL ++ + +A+ +F+ L ++G I F+N DD + Sbjct: 717 AIGSPTHALLTNIGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDP-----RIS 771 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQ------CSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + A G+ +G + ++ W + S++ + G S V + G H Sbjct: 772 AAASGMAGSVPYGMATRSEHSC--WARDISVNSAGALSFLLCSIAG-SEPVTLNFTGKHN 828 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N + + + + L P G KR L+ +++++YNAN S Sbjct: 829 VMNAIAAATVGHYFGLSLCQIREGLERLTPAPGW-KRLEV-LDACGVRILNDTYNANSDS 886 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+ AI L + G G+R+AVLGDM E+G + H + L ++ ++ G Sbjct: 887 MRKAIDALCDLP--GAGKRVAVLGDMLELGLAGEVEHQAIGNYLQQSSVDLLFTFGESAR 944 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A+P H+ E+ + L +++ L +GD+V+ K S ++++ L+ Sbjct: 945 LFGRAVPERYRGHF-ESREALLEALRTVLQEGDIVLFKGSRGMKLEQVVDALI 996 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 153/364 (42%), Gaps = 40/364 (10%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G ++ ++ DSR + P F AIKG DG FI AV++GA V+ + S +L Sbjct: 35 GAISMVTSDSREVLPGSLFVAIKGYATDGGRFIRSAVERGAAAVIC--EEFPSDPALPCL 92 Query: 85 VFGVDDVLGALNKLAVAARL-RSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V D A LA AAR+ KA+ II +TG+ GKTTT +++T L++ + Sbjct: 93 YIKVAD---ARKALAEAARIFYGKASDQLLIIGVTGTNGKTTTAKLITAMLNANGISAGY 149 Query: 140 IGSYNNHIG---VPL-----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 IG+ IG +PL L R ++ + +S + + +R H Sbjct: 150 IGTNMCRIGELEIPLDRTTPEAHGLHALFRQMLEAGCKAAVMEVSSHALVLQRVYGIRFH 209 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK------- 238 A+ T + HL + + A AK ++F+ L G LN DD + E + A+ Sbjct: 210 AALFTNLTQEHLDFHETMHDYAEAKQQLFDQLSPDGFAVLNIDDPYAEQMAARVADDKIY 269 Query: 239 --SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + G++ S + AD + S + + +S+E+ G N+ Sbjct: 270 CCTMQRGLQPALSCSRLFAADL----LQGTLASSTIVLHFPDESVEMQVKLPGNFNVMNV 325 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L I + + ALS EGR +R + QG+ +D Y P ++ A Sbjct: 326 LEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGES-RQGWMAFVD--YAHTPDALFKA 382 Query: 357 ISVL 360 + L Sbjct: 383 LDAL 386 >gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC 334] gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei ATCC 334] Length = 462 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 135/452 (29%), Positives = 213/452 (47%), Gaps = 33/452 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F ++G DGH+FI A GA V D + L V Sbjct: 26 VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPAAATAGAVATFVAADHLPVTTKLITLV- 83 Query: 87 GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L A+ +LA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F ++ Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258 IA AK EI +GL+ GT N D+ + K G+ TI++ S + Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + + ++W ++ M G + N L L + + KAL+ Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + + ++ + YNANP +MKA I S+ + GR IAVLGDM Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGL 433 E+GE S + H LAE L + V+L G + AL D L +H + + + + Sbjct: 366 LELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADTLAAKYPADQLHYYPLDDKEQM 425 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +Q+ + D+V++K+S+ +++ L+ Sbjct: 426 TRDLQNDVNHDDMVLLKASHGLHLETVLSALV 457 >gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii DSM 12563] gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii DSM 12563] Length = 451 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 124/443 (27%), Positives = 213/443 (48%), Gaps = 34/443 (7%) Query: 30 ISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---- 84 IS DSR S + F AIKG +DG+ F L KG ++ S ++++P Sbjct: 35 ISTDSRDSFDSTKLFLAIKGDKFDGNKFALETYNKGCRYFIL------SDQTINMPDNAK 88 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VF DD + KLA R R II++TGS GKTTTKE+ + LS+ K G++N Sbjct: 89 VFYTDDTILFFIKLAREYRRRFNIPIISVTGSCGKTTTKELTHLFLSTKYKALKTEGNFN 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP T+ + + + E GM+H E+ ++ + + +I + P H+++ IE Sbjct: 149 NEIGVPKTMFNLDTSYEIAVIEAGMNHKNELLRISECIEANTVIINNVEPVHIAHLGSIE 208 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AKAE+F ++ +N + + ++LK ++ IK I AD +++ Sbjct: 209 NIAYAKAELFNHTKENANAVINKNTNCADILKKEAKRNNIKNIIE------AD--IKEIV 260 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + S+ + K + H+ +G N+L L I D+ L + ++ Sbjct: 261 KKDDNSF-----EYKGIIFNHNLVGDFNLYNVLSALKAAEIYNIDLKKCADILLNYQSQK 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +N +I++ YN+NPA++K + LSQ E ++IAV+GDM E Sbjct: 316 NRMQ----IINIKGCNIINDCYNSNPAALKNMLKYLSQ---RNESKKIAVIGDMLETETE 368 Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + S+H ++ ++ L NI V G H + + + + +Y E ++ L D Sbjct: 369 NSSYHKEIGNNINELKNIDTVIAVGEHSKDIYNIV--NCEKYYFENAQSAIEKVKDFLKD 426 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 +++K+S GF +I+ + E Sbjct: 427 NTAMLIKASLGMGFAVIIDSIKE 449 >gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] Length = 471 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 14/442 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 + IDSR + E F A+KG DGH ++ + Q+GA V+V+ + GS P Sbjct: 31 VVIDSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGF 90 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + L +LA R ++AI GS GKTTTKEM+ L++ G+ NN Sbjct: 91 IVTDDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASVLATGFTVQMSQGNRNN 150 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL ++ D + E+G++H GE+ LT + RP ++T I HL ++ Sbjct: 151 HLGVPLTLLQLRPDTGIAVVEVGINHPGEMEELTAIARPTHGLLTNIGHEHLEFLIDLDG 210 Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A+A+ ++F L+++ GT F+N DDS L+A AL IY + R Sbjct: 211 VAAAETQLFTYLQESGGTAFVNGDDS---RLRAAGEALEGPVIYGTADLPGRICRARDIS 267 Query: 265 QCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 C + V E V + G H N + + + + L P Sbjct: 268 VCRDGRISFVLCSADRTEPVTLNFTGKHNVINAVAAAAVGLHFGLPLSRIREGLESLVPA 327 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G KR ++ G +++++YNAN SM+ AI L + EG+RIAVLGDM E+G Sbjct: 328 PGW-KRLE-VMDSGGLRILNDTYNANSDSMRLAIDALCDLPC--EGKRIAVLGDMLELGA 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 H + + + +++ G + P S H+S T + L + + D Sbjct: 384 AGDVEHESIGRYIHGSRVDLLYVYGEKARLICRESPGSCQGHFS-THEELLEALLEGVHD 442 Query: 444 GDVVVVKSSNSCGFYRLINLLL 465 GD ++ K S R++ L+ Sbjct: 443 GDAILFKGSRGMKLERVVESLI 464 >gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 452 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 135/464 (29%), Positives = 213/464 (45%), Gaps = 23/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A G S F++ +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATAGTSAHTDNIKFLD-VSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I V++ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRAVE----GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + + + Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKG--- 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 KTI ++G +NA + + + + ++ IG H + L + Sbjct: 236 KTI-TYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F G R + L D +YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFT---GTPMRQEIVPFEDIVILND-AYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420 R+IA+LGDM E+G+ S+ H ++ ++L+ S V+ G F K A Sbjct: 351 GK---RKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + M + I+ GDV++VK S R++ L Sbjct: 408 TFRCNSHLEMANAYSDIREK---GDVILVKGSRGLRMERVVEEL 448 >gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J1-208] Length = 418 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 123/434 (28%), Positives = 205/434 (47%), Gaps = 31/434 (7%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F G DGH+F+ A + GA D+ PV V+D L AL +LA Sbjct: 3 FVPFVGNVRDGHEFVNQAREMGAVATFWQKDVPNP--PTDFPVILVEDTLLALQELAAKY 60 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 + K +IAITGS GKTTTK+++ + + K + G++NNHIG+P T+ MP D + Sbjct: 61 IQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEV 120 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+GM+H EI L+ + +P IA+IT I AH+ EEIA AK EI GL +G Sbjct: 121 AVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGI 180 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQ--CSEQSWMEVQLQ 277 + ++++ + G +FGKS+ A+ ++R + C +W Sbjct: 181 LIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTCFITNWE----- 230 Query: 278 GKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +E+ IG H N + + + I + +A+K + E R Sbjct: 231 -PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM------ERSKSRLEWIT 283 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + +++++YN++P ++K + + G+ + + VL DM E+G+LS H + AE Sbjct: 284 TKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLADMLELGDLSTKLHQESAE 342 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 VL I V+L G + A + I VH+ +T + L + S + + ++VK Sbjct: 343 VLESDTIEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLSEIKGNEWILVKG 402 Query: 452 SNSCGFYRLINLLL 465 S G ++ L+ Sbjct: 403 SYGMGLKDVVENLI 416 >gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 464 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 188/387 (48%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + A ++ A+KA Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLAMAVGAGLN-AVKA- 313 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + +G+ Y +NQ LID++YNAN SMK+A++VL RI +GD Sbjct: 314 GLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S + H +A+ + N+ V Sbjct: 369 MAELGDESAACHQQVADFVREANLDLV 395 >gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 432 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 198/407 (48%), Gaps = 31/407 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G I + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266 K E++E L G IF++ D+ E L A S L T +G + + + K C Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGREGLYISGKLGAC 247 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + E + +G+ EV H IG + +N L + + + +AL + P R Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360 Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420 H +A+ L V L+G V+ALK++L R Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFKDVVALKESLER 407 >gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] gi|46914748|emb|CAG21525.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] Length = 468 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 126/392 (32%), Positives = 190/392 (48%), Gaps = 51/392 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S D+R+++ F A+KG +D HDF +A+ G ++V+ + + +P Sbjct: 24 VANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMDNGVAALLVSRHL-----PVELPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D AL L + + +A+TGS GKTT KEM+ LS A G+ Sbjct: 79 VVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGSCGKTTVKEMVAEILSQKGNVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ + +F + ELG +H EI + T+LV+P +A+I +A AHL F Sbjct: 139 FNNDIGVPLTLLRLTPEHEFAVIELGANHQQEIAYTTNLVKPQVALINNLAAAHLEGFGS 198 Query: 203 IEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 + +A AK EIFEGL T I L+ +D L HA+ ++ Sbjct: 199 LAGVAQAKGEIFEGLTAPLNGSGLSTAIINLDSNDVAMWLPFLAQHAVKTFSLTDI---- 254 Query: 255 NADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 +ADF SE ++ + S ++ G H N L + + A ++ Sbjct: 255 SADFSATDIFINSEGRACFTMCTPEGSTDITLTLAGTHNVSNALAAAALAMAVGATLEQ- 313 Query: 314 IKA-----------LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +KA + V HP+EG LID++YNA+ AS+KAAI +L+ Sbjct: 314 VKAGLEQVVNVKGRVDVSHPREG-------------LRLIDDTYNASVASVKAAIDLLAS 360 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + G+R VLGDM E+GE S S H ++AE Sbjct: 361 FT----GQRWFVLGDMAELGEDSASLHREVAE 388 >gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 452 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/370 (31%), Positives = 185/370 (50%), Gaps = 16/370 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G LN D++ + +A +G + ++ F + N+DF + Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q +++V+ G H N L + + AD+ L+ G Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R +Q L+D+SYNAN SM AA+ VLS++ G R V+GDM E+G S Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368 Query: 386 QSFHIDLAEV 395 + H ++ EV Sbjct: 369 AACHREVGEV 378 >gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 464 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 188/387 (48%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + A ++ A+KA Sbjct: 256 FWAENVELGLSGSHFTLHSPQGEIEINLPYLGAHNVSNALAATSLAMAVGAGLN-AVKA- 313 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + +G+ Y +NQ LID++YNAN SMK+A++VL RI +GD Sbjct: 314 GLEQRSQVKGRLYPVEVNQHCL-LIDDTYNANVDSMKSAVAVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S + H +A+ + N+ V Sbjct: 369 MAELGDESAACHQQVADFVREANLDLV 395 >gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Brevibacterium linens BL2] Length = 488 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 222/478 (46%), Gaps = 34/478 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ A+ G G+ P+ ++ G+ DSR + P + + A +G +DG +F AV+ GA L Sbjct: 8 EIATAVSGELYGVDPETKLSAGVVTDSREVGPGDIYVARRGESFDGIEFAAAAVEAGAAL 67 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSVGKTTTK 123 ++ + V ++ ++P V D AL +LA + R + T+IAITGSVGKTT K Sbjct: 68 II--GESVPTLDDATLPTVLVSDATEALGQLAKCNIESLREAGEITVIAITGSVGKTTVK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L+ +T SYNN +GVPLT R F + E+G +G + +LT LVR Sbjct: 126 DLAADLLAGEDETVWPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNLAYLTSLVR 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239 P IAV + AH F IE A AKAE+ E L LN DDS E+L Sbjct: 186 PDIAVELAVGTAHSGVFGSIENTARAKAELVESLSAGSVAILNADDSRVAGMREVLSPDV 245 Query: 240 HALGIKTIYSFGK-SKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVHHG-IGYHMAQ 294 L S + + D +R ++ S + L G+ + V IG H Sbjct: 246 STLWFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLALIGEHHVG 305 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352 N L + I + + + LS R+R L + T+++++YNANP S Sbjct: 306 NALASAAIAHACGVGMKSIVTTLSTSSA----ASRWRMELIDSPSGVTVLNDAYNANPES 361 Query: 353 MKAAISVLSQISPHGEGRR----IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M+A++ L+ + E R AVLG+M E+GE S S H D+ E++ NI+ + G Sbjct: 362 MRASLKTLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRTIVVG 421 Query: 409 ------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 F+ L+ + + T + + L GD+V+ KSS G L Sbjct: 422 DGAKPIFNAANLEGSWGN--EAAWVPTAAEAKDLLNAELAPGDIVLFKSSRDAGLRYL 477 >gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] Length = 474 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 217/476 (45%), Gaps = 27/476 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ G + PQ V+ G+ IDSR F A+ G H DGH ++ A + Sbjct: 4 MTADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRVAHEN 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKA----TIIAITGSV 117 GA +V T +V G + + VDD AL LA V AR R A ++ ITGSV Sbjct: 64 GATTSLV-TRLVPDAGDGAQVL--VDDAQRALGDLARHVLARRREVADEPPVVVGITGSV 120 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L+ + +A GS NN +G+PLT+ R P D + E+G G + + Sbjct: 121 GKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDARVVVAEMGADAPGNLTY 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + P +AV+ T+ AHL+ F ++ +A+ K+E+ GL G LN DD + Sbjct: 181 LTSIAPPDVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGFAVLNADDE-----RV 235 Query: 238 KSHALGIKTIYSFGKS-----KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + A + +FG + + +++ G+ + V +G H Sbjct: 236 AAMARLAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEHH 295 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L L + A A ++ + R T++D++YNANP S Sbjct: 296 VTNALAA--AAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDGVTVVDDAYNANPES 353 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++AA+ L I+ E R +AVLG+M E+G+ S+ H + V N+ + + G Sbjct: 354 VRAALKALVAIAGR-ERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGAR 412 Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A+ ++ +D ++ + L GDVV+VKSS G L + L Sbjct: 413 AMHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKGAGLAALADEL 468 >gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya dadantii Ech703] gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech703] Length = 453 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 186/385 (48%), Gaps = 33/385 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R + F A++G ++D HD+ AV GAG +VV + + +P V Sbjct: 27 VSTDTRKLTAGCLFVALRGENFDAHDYAADAVAGGAGALVVCKRL-----PIEVPQLVVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL LA R +S A ++A+TGS GKT+ KEM L G++NN IGV Sbjct: 82 DTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVLYTAGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + DF + ELG +H+GEI + T LV+P A++ IA AHL F + +A A Sbjct: 142 PLTLLRLAPEHDFAVIELGANHIGEIAYTTELVKPETALVNNIAAAHLEGFGSLAGVAQA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF+GL + G +N D + + +L KT++ F + +ADF + Sbjct: 202 KGEIFDGLPENGVGIINADSNDIARWQP---SLAGKTLWRFSSQPASSADFLASDVRAAD 258 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR- 326 + + ++V G H N L + + A ++ LS GR Sbjct: 259 LGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAISVGASLEAVKLGLSRLQAVPGRL 318 Query: 327 -------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GKR L+D+SYNAN SM AA VL+++ G ++ V+GDM Sbjct: 319 FPILLAPGKR-----------LLDDSYNANVGSMTAAAQVLAEMP----GYQVMVVGDMA 363 Query: 380 EMGELSQSFHIDLAEVLSLYNISHV 404 E+G+ +++ H + L I V Sbjct: 364 ELGQEAEACHRQVGAAAKLAGIDKV 388 >gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] Length = 432 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G I + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266 K E++E L G IF++ D+ E L A S L T +G + K C Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + E + +G+ EV H IG + +N L + + + +AL + P R Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360 Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420 H +A+ L V L+G V+ALK++L R Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFQDVVALKESLER 407 >gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 453 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] Length = 432 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G I + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266 K E++E L G IF++ D+ E L A S L T +G + K C Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + E + +G+ EV H IG + +N L + + + +AL + P R Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360 Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420 H +A+ L V L+G V+ALK++L R Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFKDVVALKESLER 407 >gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] Length = 478 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 136/440 (30%), Positives = 197/440 (44%), Gaps = 29/440 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGSLSI 83 I DSR + P F + G +DGH F+ A+++GA V+ D +++ + S Sbjct: 28 IGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQAEALVRSSGG 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 ++ VDD A +L R + A +IA+TGS GKTTT+E++ LS + A +G+ Sbjct: 88 RIWLVDDTQAAYQELGRLWRRQGSAPVIAVTGSAGKTTTRELIRAVLSPLGPVLASVGNE 147 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL + + + E+GM LGEI L+ P I VIT I AH+ Sbjct: 148 NNDIGVPLTLLKAGGEHRAVVVEMGMRGLGEIERLSRCAEPDITVITNIGTAHIGRLGSR 207 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQ--- 259 E IA+AK EI L G + + D E L A I+ + Q Sbjct: 208 EAIATAKCEIVAALRPDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPTGPQPGQLLG 267 Query: 260 -LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 LR W + + G H A+N+L+ L + S L D + L Sbjct: 268 RLRAGTDGDRLIWGRAEPGAREHSTELPLPGRHNARNLLLALAVASELGVD-PLQLSRLE 326 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V P GR +R R G ++DE+YNA+P +M AA+ +L+ GRR A LG M Sbjct: 327 VALPG-GRSRRIRL----GEIEVLDETYNASPEAMLAALDLLASQG----GRRFAALGTM 377 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGL 433 E+GE S H + E + + + G +LA LPR V E Sbjct: 378 LELGEQSTELHRRVGERARALGLDGLVIVAGGAEGEALLAGAAGLPRLQRVDSPEDAAQT 437 Query: 434 FLFIQSSLVDGDVVVVKSSN 453 L L GD +++K+S Sbjct: 438 LL---GWLEPGDHLLLKASR 454 >gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] Length = 453 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPNAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGDFSKNIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 453 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 216/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGALPSAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] Length = 437 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 125/438 (28%), Positives = 209/438 (47%), Gaps = 26/438 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GIS D+R++ F A++G +++G+ + A+ GA V+V+ + ++G+ SI V Sbjct: 20 GISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDPKLKNLGANSIVV--- 76 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L L +LA R + II ITGS GKTTTKE++ LS K A G+ NNHIG Sbjct: 77 EDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNLNNHIG 136 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + I E+G +HL EI+ L + P+ IT AHL F G++ + Sbjct: 137 VPLTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYITNFGKAHLEGFGGVDGVIK 196 Query: 209 AKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L E+ I +N DD ++ + K++ + SFG K FQ+ + Sbjct: 197 GKSELYNHLIEQQQKILINGDDP-LQIKQTKNYP-----VSSFGHGKENTFQI-----ST 245 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + E+QL + G + N+ + I + KA+ + R Sbjct: 246 NEKDDELQLTYNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTKSIQKAIQKYQATNNRS 305 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 ++ + ++I ++YNANP SM+ AI +I+ + + ++GDM E+G S+ Sbjct: 306 QKIKIKNT----SIILDAYNANPTSMEHAIKAFKKIATQ---KSVLIMGDMKELGVESEK 358 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDV 446 H + + + L G KD + V + ++ FI + S +D D Sbjct: 359 EHQQIVDYCLEMKFEQIDLIGPLFSKTKDV---ADMVRKHKNLNSFTNFINAQSQLDFDH 415 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S S L+ L Sbjct: 416 IMIKGSRSMKLETLLPLF 433 >gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 464 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 183/387 (47%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + AD+ L Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + +G+ Y +N ID++YNAN SMK+A+SVL RI +GD Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S++ H +A+ + N+ V Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395 >gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] Length = 503 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 190/374 (50%), Gaps = 24/374 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA V+V+ + A LS+P Sbjct: 23 MIDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 VD+ AL ++A A R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256 + +A K I+ L G +N DD+F FE + +S + + + +G +A Sbjct: 198 LGSLLGVARTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGLQASA 256 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + R+ + + V QG++ + G H N L G+ L A + + Sbjct: 257 EITARQLRLHTGGAQFTLVTPQGEA-PIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A + + G++ L G LID+SYNANP S+ AAI L+ GEG VL Sbjct: 314 ADGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368 Query: 376 GDMCEMGELSQSFH 389 GDM E+G + H Sbjct: 369 GDMRELGAEGVALH 382 >gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] Length = 444 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 23/424 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R I FFA+KG ++G+ F A+ KGA +VVV D ++ I + V Sbjct: 31 VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVV--DEPQNLQDDRIIL--VK 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L +L LA A R + +I +TGS GKTT+KE++ L + + G+ NNHIGV Sbjct: 87 NGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNNHIGV 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL +P + + E+G +HL EI L+ + +P + +T AHL F G E + Sbjct: 147 PLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGGFEGVVKG 206 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ L E T+ +N DD +L +AK+ +++ SF SKN Q + E Sbjct: 207 KSELYNFLHEHHKTVLINADDP-LQLQQAKA----VESQISF--SKNESTQATYCIELKE 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 ++Q+ + + + + G + N+ + + ++P R + Sbjct: 260 NVNNKIQVVVEDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEIKNGIENYYPANHRSQ 319 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + + +TL+ ++YNANP+SM+A+++ S +G + +LGDM E+GE S+ Sbjct: 320 ----LIQKDKYTLLMDAYNANPSSMEASLNNFSTF----DGSKTVILGDMFELGESSKVN 371 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H +A++ ++L G + ++ + + E D L +++ ++ ++ Sbjct: 372 HQKIAQLTKDLGFEKIYLVGNNFSKIEGDFS---DIQFFEDRDSLVNYLKKHPIETKNIL 428 Query: 449 VKSS 452 +K S Sbjct: 429 IKGS 432 >gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 464 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 183/387 (47%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + AD+ L Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + +G+ Y +N ID++YNAN SMK+A+SVL RI +GD Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S++ H +A+ + N+ V Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395 >gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 453 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 124/467 (26%), Positives = 218/467 (46%), Gaps = 21/467 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+IR L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIRELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L+ E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLNNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVIKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ + E ++ L I +GD+++VK+S S F + LLE+ Sbjct: 411 TVYKNKEELINDLLNII----CEGDIILVKASRSLKFEEITKALLEK 453 >gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] Length = 421 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/384 (32%), Positives = 183/384 (47%), Gaps = 25/384 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ D+R FF ++G ++DG+ F+ A++KGA VV + S + V Sbjct: 11 GVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKAIV----V 66 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL +LA R + IIA+TGS GKTTTKE++ L+ G+ NNH+G Sbjct: 67 KDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNLNNHLG 126 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + D I E+G +H GEI L + P IT AHL F E + Sbjct: 127 VPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSFEGVIR 186 Query: 209 AKAEIFEGLEKTG-TIFLNYDDSF-FELLKAKSHALGIKTIYSFG--KSKNADFQLRKWK 264 AK+E+++ L+K IF + D+S ELL+ G + YSF + A+ QL K Sbjct: 187 AKSELYQYLKKDNKCIFFSEDNSLQRELLE------GYEPTYSFSLEGREGANLQLSLLK 240 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S V L+ E IG + A N+ + I + + + + P Sbjct: 241 -----SIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAEAIRRGVEGYIPTN 295 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +G L+D +YNANP+SM AAI + ++ +LGDM E+G Sbjct: 296 NRSQ--FVEKTRGNRVLMD-AYNANPSSMHAAIEAFQALP---SAHKVLILGDMKELGAY 349 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG 408 S+ H L ++ Y + V L G Sbjct: 350 SEREHQQLVTDIATYPWTAVLLIG 373 >gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 190/374 (50%), Gaps = 24/374 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA V+V + A LS+P Sbjct: 23 MIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVARGASGVLVERLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 VD+ AL ++A A R +AT ++A+TGS GKT+ K +L L+ + YA Sbjct: 79 VVVDNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILTEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256 + +A K I+ L G +N DD+F FE + +S + + + FG +A Sbjct: 198 LGSLLGVAQTKGAIYAALPAGGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRFGVQASA 256 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + R+ + + V QG++ ++ G H N L G+ L A + + Sbjct: 257 EITARQLRLHPGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A + + G++ L G LID+SYNANP S+ AAI L+ GEG VL Sbjct: 314 AAGLAQARAVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAA--QGEG--WLVL 368 Query: 376 GDMCEMGELSQSFH 389 GDM E+G + H Sbjct: 369 GDMRELGAEGVALH 382 >gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 417 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 172/374 (45%), Gaps = 51/374 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R F A+ G ++D HD+I A Q GA +V N + + +P VD Sbjct: 26 VCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGAVAIVANKPV-----NNQLPTLVVD 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D ALN +A K +IAITGS GKTTTK ML L+ T G+ NNH+GV Sbjct: 81 DTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNMLANILNLQAPTLKTQGNLNNHLGV 140 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL + + + E+G +HLGEI L LV P+IA++T AH+ F G + + A Sbjct: 141 PMTLLTLEEQHQYAVIEMGANHLGEIAHLCSLVNPNIAIVTNTLDAHIGEFGGFDNLVKA 200 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK------SK--NADFQLR 261 K EI+ +N D+F + SFGK SK N F L Sbjct: 201 KGEIYSNNSHN---IVNTQDTFTGDV-------------SFGKGGDIFASKLVNNKFDLN 244 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 +KQ + V + IG H +N L L D++ + L V Sbjct: 245 IYKQ--------------KISVTLNLIGTHNIENALAASTCAYALGIDINLIKQGLEVTK 290 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + GR + +N F +ID++YNANP S A+ L S G +I VLG M E+ Sbjct: 291 AEHGRLE----VINTKKFRIIDDTYNANPHSTTTALKALQDFS----GEKIVVLGAMREL 342 Query: 382 GELSQSFHIDLAEV 395 G S+ H+ + ++ Sbjct: 343 GNDSEELHLKIGQL 356 >gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 211/449 (46%), Gaps = 28/449 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFG- 87 +SIDSR + F A+ G DGH F+ ++GA +V+V+ + ++ GS L P G Sbjct: 33 VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92 Query: 88 --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + L +LA R ++ + GS GKTTTKEML LS+ + + + NN Sbjct: 93 LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL M + + + E+G++H GE+ LT + RP ++T I HL ++ Sbjct: 153 HLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDG 212 Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKS--------HALGIKTIYSFGKSKNA 256 +A A+ +F L++T GTIF+N DD H + S Sbjct: 213 VARAERALFSFLDETGGTIFVNNDDPRLRDAATDPQRHILYGMHCGDCCSCRGGALSVLP 272 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 D LR + SE+ E++L + G H N L + + + Sbjct: 273 DGSLR-FMLYSERGDEEIRL---------NFTGRHNVLNALAAAAVGIFFGIEPREVRRG 322 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L P+EG KR ++ G TL++++YNANP SM+ AI L + +GRRIAV+G Sbjct: 323 LEGLVPREG-WKRLE-VVSAGGVTLLNDTYNANPDSMRLAIDALLDMP--CQGRRIAVIG 378 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ H + L+ ++ ++ G ++ P H++ + + LF Sbjct: 379 DMLELGDAGPGEHEATGKYLAGSSVDMIFSFGELAGSICFLNPGRCRGHFT-SREKLFDA 437 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L +GD V+ K S + +L Sbjct: 438 LSRELEEGDTVLFKGSRGMKLEETVTAIL 466 >gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 450 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 177/385 (45%), Gaps = 29/385 (7%) Query: 11 LQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LQ + G + G +P V G+ D+R++AP F A++G +DGHD+ AV GA LV+ Sbjct: 9 LQTLLGAEAEGTLPMS-VRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGAALVI 67 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 +++P V D L A LA R R ++A+TGS GKTTT+E++ Sbjct: 68 AER-------PVAVPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTRELIRAV 120 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L++ A G+ NN +GVP L ++ + + E+GM GEI L P++ VI Sbjct: 121 LATAGPVLAPPGNENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPNVGVI 180 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + AH+ IA AK E+ L +G LN +D L A+ H G Y Sbjct: 181 TNVGSAHIGRLGSHAAIADAKCELLAELPCSGIAVLNGEDERL-LSTARRHWAGPVLTYG 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 D S+ V L + + G H N L L + L + Sbjct: 240 L---DAGDVM---------GSFDGVHLHVDGIAFIPPLPGRHNHLNFLAALAVARHLGLE 287 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + L G R R +G LIDE+YN+ P S +AA++ L+ + G Sbjct: 288 LLQVRERLKDLQLPTG---RSRVIALEGDVQLIDETYNSAPESARAALAWLAGLP----G 340 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394 RRIAVLG M E+GE S+ H L E Sbjct: 341 RRIAVLGQMRELGEFSRELHRVLGE 365 >gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] Length = 468 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 196/396 (49%), Gaps = 14/396 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + IDSR + P + F + G DGH F AV+KGA V+ + G+ PV Sbjct: 24 VTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGAVAVLAQRPLPEVDGA---PVL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LAVA R ++ ++A+TGS GKTT KE++ L++ + NN Sbjct: 81 LVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKELIAQTLAAEMSVAKNHKNLNNQ 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PL++ + D + E+G+S G++ L + P +AVI I PAHL + + Sbjct: 141 IGLPLSMLAASGEEDVWVMEVGISRQGDMEELAPIASPDLAVIHNIGPAHLEGLGSLRGV 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQLRKWKQ 265 A AKA + + + G +N D + EL +A ++ + + +++ A + Sbjct: 201 AEAKAHLLTSVRRGGAAIVNRD--YPELWEAAQRIFPSVRAMST--QNEKAPYFCTYLGP 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++L+ + +EV +G H A+N++ +L + ++AL+ + Sbjct: 257 SQQGGVFLLRLEDERLEVDLPFLGAHFAENVVAAASAAYLLGMSAGSIVQALAKAQLPD- 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +R+ A + GF TLID++YNANP SM AI ++++ G + VLGDM E+G + Sbjct: 316 --QRF-AAHHLGFGTLIDDTYNANPLSMSRAIQAATELA--GNRPLVLVLGDMLELGSEA 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ H+ L E + + V G A+ L ++ Sbjct: 371 EAEHVRLGERAAASGCAAVVYRGGFAKAVARGLAQA 406 >gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 193/387 (49%), Gaps = 47/387 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R+I + F A+KG +D HDF A GA ++V+ + + +P Sbjct: 24 ISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKRL-----PVDLPQL 78 Query: 87 GVDDVLGALNK----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D AL + L V + +A+TGS GKTT KE+ L++ A G+ Sbjct: 79 VVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTVKEISAAILATKGNVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IG PLTL R+ + + + ELG +H EI + T+LV+P +A+I +A AHL F Sbjct: 139 FNNDIGAPLTLLRLTPEYQYAVIELGANHQQEISYTTNLVKPDVALINNLAAAHLEGFGS 198 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLR 261 ++ +A AK EIFEGL G +N D + L + L + +F + +AD+ Sbjct: 199 LKGVAKAKGEIFEGLSDGGIAIVNLDSNDLPLWQP---LLAQHQVLTFSATASDADYHAE 255 Query: 262 K----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG-IVSILTADV 310 + + C+ ++V L ++ +H+ A + ++LG ++ + A + Sbjct: 256 RININAQGLACFTMCTPIGKVDVNL---TLAGMHNVANALAAAALTISLGATLAEVKAGL 312 Query: 311 DTAIKA---LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +T L + P+ G LID++YNA+ A++KAAI VL+ Sbjct: 313 ETMANVKGRLDITEPRAG-------------LRLIDDTYNASVAAVKAAIDVLANF---- 355 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAE 394 +G+R +LGDM E+G+ S + H ++ E Sbjct: 356 QGQRYFILGDMAELGDESDNLHREVGE 382 >gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] Length = 473 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 127/451 (28%), Positives = 199/451 (44%), Gaps = 15/451 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + ++ DSRS+ P + F A+ G +D HDF+ V +GA V+V+ A++ + Sbjct: 20 PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRPPAATLDMTN 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D L +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 80 VAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 140 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 199 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADF 258 +E +A A + L G D + E A G + + FG A Sbjct: 200 MVSVEAVAEEHAAVLAALPADGVAVYPRDAANGGEFAPVWQAAAGSRRVLDFGIEAGA-- 257 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +E ++VQ G+ + +G H A+N L + +AL Sbjct: 258 VTGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAATACALAAGVAPEVIAQALG 317 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F P +GR +R + + G +ID++YNANP SM+AAI L+ + R VLGDM Sbjct: 318 NFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALATLP----APRWLVLGDM 370 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G +FH ++ I V +G DA H++ D L Sbjct: 371 GEVGSQGPAFHEEIGAYARTRGIDAVLATGELARHTVDAFGAGAQ-HFASAED-LIEHGL 428 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 ++ V+VK S R++ L+ + P Sbjct: 429 GAIAPAATVLVKGSRFMRMERIVEALVLKDP 459 >gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36] gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36] Length = 478 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 202/446 (45%), Gaps = 45/446 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S D+R+I + F A+ G ++D + F+ A ++GA +V ++ IP Sbjct: 24 ITAVSTDTRTIKAGDLFIALSGDNFDANRFVATAAEEGAIAAIVTKKQ-----AVDIPQI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL L R + A+TGS GKTTTKEML L + T A G++NN Sbjct: 79 IVKDSRIALGLLGKMVREHVAPKVAALTGSNGKTTTKEMLAAILKLVAPTLATAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ F + ELG +H EI + T LV P + +I + AHL F ++ + Sbjct: 139 IGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTGLVLPDVVLINNVDAAHLEGFGDLQGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK--- 262 ASAK+EI G+++ G LN DD F+ K A + SF NAD+ Sbjct: 199 ASAKSEILSGVKQQGIAVLNRDDKFYPYWLRKVDA---QRQVSFSVVDDNADYFAADIEF 255 Query: 263 -------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 +K C+ + L G H N L I S D+ T + Sbjct: 256 DNAGNPTFKLCTSNGDCTINLAVA---------GRHNVANALAAAAIASCFGIDISTIKR 306 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L +GR K + +ID+SYNAN AS+KAAI+VL+ H + V+ Sbjct: 307 GLESMVNVQGRLKISQLTPR---IRIIDDSYNANIASVKAAINVLT----HFPSTNVLVM 359 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G + H + + HV+ G A+ R + E+ G Sbjct: 360 GDMGELGSSTADMHQQVGHYAQQQQVDHVYTCG--------AVSREAALTAGES--GRAF 409 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461 QS+LVD V +V ++ + L+ Sbjct: 410 LAQSALVDALVELVTTAPDTQMFTLL 435 >gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] Length = 432 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 187/386 (48%), Gaps = 26/386 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+++G +V+ A +G + V+ Sbjct: 16 VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEAEYA-VGDDERYIL-VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L +LA R + K +I +TG+ GKTTTKE+ LS G+ NNHIGV Sbjct: 74 DVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + E G SH GEI+ L +V P +IT + AHL F E + Sbjct: 134 PKTLLELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193 Query: 210 KAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS------KNADFQLRK 262 K E+++ L K GT+F+N+D + + H + + S + A F + Sbjct: 194 KGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQICYGSPCDEVLSVEGEVLECAPFLKFR 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 W+ + W EVQ IG + QN+L I +VD +AL+ + P Sbjct: 254 WRPAGGE-WQEVQTG---------LIGAYNMQNLLAAATIGRTFGVEVDAVNRALAAYEP 303 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 K R + N+ L+ ++YNANP SM+AAI + RR+A+LGDM E+G Sbjct: 304 KNNRSQLTETDDNK----LLVDAYNANPTSMRAAIENFRDMKVE---RRMAILGDMGELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 + S H +A++L HVWL G Sbjct: 357 DCSWKAHQAIADLLVESGFEHVWLVG 382 >gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens F0305] gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens DSM 10105] gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens F0305] gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens DSM 10105] Length = 525 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 137/439 (31%), Positives = 208/439 (47%), Gaps = 67/439 (15%) Query: 6 TFHDLLQAIQGH-------SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 T + QA+ G S I Q V+ DSR + P F AIKG DGH ++ Sbjct: 5 TLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDGHAYLE 64 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA---------VAARLRSKAT 109 A GA VV+ ++ + S+P V+D + AL LA +A + R+ T Sbjct: 65 QAAAAGAVAAVVDHEVAGA----SLPQILVEDTVRALGFLARHNIEKRRSLAGQARTPFT 120 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGSVGKTTTK+++ LS + T A GS+NN IG+PLT ++ + F + E+G Sbjct: 121 IVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLVAEMGA 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +GEI +LT + RP +AV + AHL F +E I AK+E+ L +G LN +D Sbjct: 181 SAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAILNEND 240 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW----------------ME 273 L+ + G++ + FG ++ + R + SE ++ ++ Sbjct: 241 ENIRLMPEMT---GVRNLLWFGLHEDRPDEDRSDE--SETAYPSVPSAMSAAEIYGDQVQ 295 Query: 274 VQLQGKSMEVVH--HGIGYHMA------QNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 V Q + VH G G M+ N++ L + + A +D +A++ +G Sbjct: 296 VDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYA-MDLPTEAIAGILAHQG 354 Query: 326 RGKRYRCALNQG--------FFTLIDESYNANPASMKAAISVLSQISPHGEGR------- 370 +R + Q FTLID+S+NANP SMKA + L+ H E R Sbjct: 355 AQSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAW--HAESRTRDERPY 412 Query: 371 RIAVLGDMCEMGELSQSFH 389 R+AVLG M E+G + H Sbjct: 413 RVAVLGSMLELGPNEKELH 431 >gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 503 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 186/375 (49%), Gaps = 26/375 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140 V D AL ++A + + ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F FE A G + I +G AD Sbjct: 199 GSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPAQG-RCIVRYGLQIGAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + Q + V QG++ +V G H N L G+ L A + + A Sbjct: 258 ITARELQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314 Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L+ HP GR + L G LID+SYNANP S+ AAI L+ GEG V Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLV 367 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G + H Sbjct: 368 LGDMRELGAEGLALH 382 >gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 24/374 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140 V D AL ++A + + ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNADF 258 + IA K I+ L G +N DD+F + + A + + I +G AD Sbjct: 199 GSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPVQGRCIVRYGLQIGADI 258 Query: 259 QLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA- 316 R+ + Q + V QG++ +V G H N L G+ L A + + A Sbjct: 259 TARELQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIAA 315 Query: 317 -LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ HP GR + L G LID+SYNANP S+ AAI L+ GEG VL Sbjct: 316 GLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368 Query: 376 GDMCEMGELSQSFH 389 GDM E+G + H Sbjct: 369 GDMRELGAEGLALH 382 >gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] Length = 440 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 180/387 (46%), Gaps = 20/387 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A++KG +++ A G + VD Sbjct: 16 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDERYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 193 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQC 266 K E+++ L+ G +FLN + L + I ++G+ + AD Q + C Sbjct: 194 KGELYDFLKAHGCLLFLNESNPD---LTEMAEQRAFDRIITYGQDETADVQGYVVSCAPC 250 Query: 267 SEQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + W L EV H IG + NML + I AL + Sbjct: 251 LKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYV 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + A N+ LI ++YNANP+SM AAI + ++A+LGDM E+ Sbjct: 311 PHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFQLMEVEN---KMAILGDMREL 363 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 G+ S H + E+L +I +VWL G Sbjct: 364 GDASAEEHQKVVELLKATDIRNVWLVG 390 >gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 458 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 215/443 (48%), Gaps = 30/443 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88 + DSR I P F A+KG +D HDF+ A+Q GA G++V G + + V Sbjct: 29 VCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLGAHGVIVSRMQHDLPDGDILL----V 84 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L AL +LA R + ++A+TGS GKTTTK+M++ L + +G++NN IG Sbjct: 85 DDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKDMISALLETKYLVLKTLGNFNNEIG 144 Query: 149 VPLTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +PLTL + +D G + E+GM LGEI FL + P VIT I HL +E I Sbjct: 145 LPLTL--LGLDESHGAVVVEMGMRGLGEIDFLARIACPTAGVITNIGETHLERLGTVENI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265 A AK E+ + G LN DD + + +H K I Y S + K Sbjct: 203 ARAKTELLPHIPVGGYAVLNGDDPW---QRKYAHLTRAKVIFYGMDHSNHVYADNIKCNM 259 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNML--MTLGIVSILTADVDTAIKALSVFHP 322 + S+ ++ K +V H + G H N L +T+G+ L+ ++ + Sbjct: 260 GAGASF--TVIRDKIAKVFHLPVPGRHNIYNALAAITVGLQEGLSWEM-----CMEGLQN 312 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 G R + G +I+++YNANPAS KAA+ +L+++ G+++AVLGDM E+G Sbjct: 313 VVLSGMRLQIIDCNG-LKIINDTYNANPASSKAAVRILAEMPC--AGKKVAVLGDMYELG 369 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG---FHVL-ALKDALPRSIHVHYSETMDGLFLFIQ 438 + + H ++ E + I + G H+ A K A +++ S + + Sbjct: 370 QRTVQGHREVGETVQNLKIDILVTVGELALHIAEAAKAAGMDRKNIYVSRNNNEALEILN 429 Query: 439 SSLVDGDVVVVKSSNSCGFYRLI 461 + L GD+V+VK S +++ Sbjct: 430 NILKAGDLVLVKGSRGMKMEKIV 452 >gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] Length = 430 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/371 (31%), Positives = 176/371 (47%), Gaps = 29/371 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP G I DSR+I+ + F +KG DGH+FI A GA +A+I Sbjct: 24 VPLG---NIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGA---------IATISEK 70 Query: 82 SI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I P V D L A LA + +IA+TGS GKTTTK+M+ LS+ KTY Sbjct: 71 EIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAAILSTTYKTYK 130 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+P T+ MP D + I E+G HLG+I L+ + +P IAV+T I AHL Sbjct: 131 TQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAKPRIAVVTLIGEAHLE 190 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E+IA K +I +G+ G + D L A + FG + + Sbjct: 191 FFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTI------RFGHDQ--EL 242 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q+ + K+ E+ + + ++ G + A N ++ + +L + + AL Sbjct: 243 QVTELKE--EKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALE 300 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + + A ++ + YNANP +M+ + S I + G++IA+L DM Sbjct: 301 NLQLTRNRTEWKKSA---NGADILSDVYNANPTAMRLILETFSAIPNNDGGKKIALLADM 357 Query: 379 CEMGELSQSFH 389 E+GE S H Sbjct: 358 KELGEQSVDLH 368 >gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida 3523] Length = 453 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 196/382 (51%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA V +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIIANRDGHEFIPSAIANGAKAV-----LVSKKQDLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKTT KEM+ L S KK + G++NN+ Sbjct: 77 VCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTLLGS-KKVHFTQGNFNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P +VDF + E G + GEI+ +++P+IA+IT + +HL N ++ + Sbjct: 136 LGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGASHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L K G +N DD E + A + L K I +++AD + ++ Sbjct: 196 MIEKGELLKALPKDGFCIVNLDD---ERIPAYADKLDCKKITCSMSNQDADILILDYQVT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E +++++ K IG H N + L I S++ A + + + K + Sbjct: 253 PELYDVKIRIFDKEYSYQLPNIGKHNLSNSM--LAIASVVAAGFEPNSFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI L++ +G+R+ + M E+G+ ++ Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLAEF----DGKRVIAITSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L+ N+ ++L G Sbjct: 366 NYHRKMGQWLNKANLDKIFLFG 387 >gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4] gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei 5_1_36/D4] Length = 432 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 196/407 (48%), Gaps = 31/407 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G I + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPRILL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQC 266 K E++E L G IF++ D+ E L A S L T +G + K C Sbjct: 194 KGELYEHLRYNGKHIIFIDKDN---EYLTAISQGL---TRICYGMEGGEGLYISGKLGAC 247 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + E + +G+ EV H IG + +N L + + + +AL + P R Sbjct: 248 APFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNR 307 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S Sbjct: 308 SQLTETTDNK----LIVDAYNANPTSMMAALENFRLMNV---AHKMVILGDMKELGETSH 360 Query: 387 SFHIDLAEVLSLYNISHVWLSGFH-------------VLALKDALPR 420 H +A+ L V L+G V+ALK++L R Sbjct: 361 EEHQKIADYLDECKFDRVLLAGEEFGKVIPSFEHFQDVVALKESLER 407 >gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] Length = 467 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 125/382 (32%), Positives = 191/382 (50%), Gaps = 35/382 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R FFA+KG H+D H ++ A+ +G +VV M+ ++ P Sbjct: 25 VETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIAQGCIALVVEQRML-----INAPQI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI------ 140 V D AL +LA + + IAITGS GKTT KEM A ++K AC Sbjct: 80 IVADTRLALGELAKWLKAKLNPKTIAITGSSGKTTVKEM---AAKILQKLTACADEVLYT 136 Query: 141 -GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +GVPLTL R+ F + ELG +HLGEI + T + +P V+ +A AHL Sbjct: 137 SGNLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIAYTTSITQPDACVVNNVAAAHLEG 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLN---YDDSFFELL---KAKSHALGIKTIYSFGKS 253 F + +A AK EI+ GL G +N Y ++ + K +S AL Y + Sbjct: 197 FGSLAGVAQAKGEIYRGLPPEGIAIINQASYSSAWQTEIGSRKVQSFAL-----YPSAEH 251 Query: 254 KNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 K DF + ++M QG+ +E+ +G H N+L +V + AD+ Sbjct: 252 KPVDFSAENVHLHLNGSTFMLHSPQGE-IEINLPYLGEHNVSNVLAASALVMAVGADL-A 309 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 AIKA + P +G+ +N+ + LID++YNAN SMK+A+ VL + RI Sbjct: 310 AIKA-GLEQPVAVKGRLCPLPINR-YCLLIDDTYNANVDSMKSAVQVLKNY----QAFRI 363 Query: 373 AVLGDMCEMGELSQSFHIDLAE 394 + DM E+G+ S + H ++A+ Sbjct: 364 FAVADMGELGKDSVACHQEVAD 385 >gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] Length = 439 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 209/437 (47%), Gaps = 24/437 (5%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 + DSRSI + + I+G DGH FI AV +GA + + + + I V V+D Sbjct: 25 ATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAIATLWKKGI--PLPEMDITVLEVED 82 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L AL +A + +IAITGS GKT+TK+M+ L +T+ G++N+ IG+P Sbjct: 83 PLQALQIIAKRYLQQVAPKVIAITGSNGKTSTKDMIESVLKQSFRTHKTAGNFNSDIGMP 142 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LT+ MP++ + + E+GM+ G+I L++L P IA++T I +H G IA AK Sbjct: 143 LTILMMPIETEVAVLEMGMNGFGDIELLSNLAEPDIALVTNIGESHAEQVGGRTGIAQAK 202 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EI GL+ G +F++ D+ + A+ Y +++ A F +K Sbjct: 203 LEIRSGLKPNGHLFVDGDEPLLGEVPAERIGYHATNTYVIEQAE-ATFIGTTFK------ 255 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 G + + +G H +N + L D L+ R +R Sbjct: 256 -----FDGTTFSIPV--LGKHQVRNAAYAIATAKALGLTDDVIQAGLNDVQLTPMRMER- 307 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 L G +I+++YNA+P SM AAI ++ + G ++ VLGDM E+G+ + H Sbjct: 308 ---LMYGQTAIINDAYNASPTSMNAAIETIATLD--GFTNKVVVLGDMYELGQQERLLHA 362 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + ++L +SH L G + D + ++ V +++T++ +Q L V+++ Sbjct: 363 SVGKKIAL-PVSHAILVGGKGRYIADGIADPTVQVQFADTVEEAARLLQPLLGQQTVILL 421 Query: 450 KSSNSCGFYRLINLLLE 466 K+S ++ L E Sbjct: 422 KASRGLALEQIFTFLNE 438 >gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 433 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 31/389 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+Q+G VVV+ G + VD Sbjct: 16 VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEAEYCVQGDERYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL A LA R I+ ITG+ GKTTTKE+L L +G++NN IGV Sbjct: 74 NVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L LV P +A+IT + AHL F E + Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193 Query: 210 KAEIFEGLE--KTGTIFLNYDDSF-------FELLKAKSHALGIKTIYSFGKSKNADFQL 260 K E+++ + K G +F++ ++ +L+K + A ++ GK +A L Sbjct: 194 KGELYDFMRQSKRGKVFVDANNPHLMGIAEGLDLVKYGTPAR--PDLFVSGKVVSAAPFL 251 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 R Q +W EVQ H +G + NML + + L D A +AL+ + Sbjct: 252 RFAWQREGGAWNEVQT---------HLVGAYNVLNMLAAISVGLYLGVSADEANRALAHY 302 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMC 379 P R + A N+ LI ++YNANP SM A++ + PH ++A+LGDM Sbjct: 303 VPSNNRSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH----KMAILGDML 354 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G +S+S H +A+ LS + VWL G Sbjct: 355 ELGAVSESAHQAIADQLSQLALDEVWLVG 383 >gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 453 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 462 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 132/423 (31%), Positives = 195/423 (46%), Gaps = 55/423 (13%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + H++ I +G +N ISI S I Q F A+ G YDGHDF+ AV G Sbjct: 4 FRLHEIACFINAKCVG--SDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++VN + SL IP V D AL K+A R + + IIAITGS GKT+ KE Sbjct: 62 AKALLVNRYV-----SLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L A +YNN IGV +TL ++ +DF + ELG + LGE++ L +V Sbjct: 117 MTASILKECGTVIATQKNYNNFIGVSITLLKLTYGIDFAVVELGSNKLGELKKLGEIVGA 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALG 243 +A++ I +HLS F + I K +IF G+ +N D Sbjct: 177 DVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDS-------------- 222 Query: 244 IKTIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------------- 288 YSF G S +F+ +KW + + V ++ + HGI Sbjct: 223 ----YSFVQGNSILLNFK-KKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPI 277 Query: 289 -----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N+L + + A + + L + GR + LN+G LID Sbjct: 278 FMPILGIHNISNILAASALSFAVGASLSNIVHGLQKMNALPGR--LFPFILNRGKLCLID 335 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNI 401 ++YNAN SM AAI+VLS + G RI V+ DM E+G+L ++ +H + ++ NI Sbjct: 336 DTYNANIGSMIAAINVLSFM----PGYRILVVSDMLELGDLKMARYYHCYIGRLILGSNI 391 Query: 402 SHV 404 ++ Sbjct: 392 DYI 394 >gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] Length = 464 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 126/416 (30%), Positives = 201/416 (48%), Gaps = 45/416 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N +SI+S+ + + F AI+G G+ F+ A++KGA V +++ V + F Sbjct: 21 INNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGA-FAVYDSEAVKIDEKYAERAF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + L K A R +I ITGS GKTT K+M+ LS K G+YNNH Sbjct: 76 FVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNYNNH 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL R D DF I E+GMS GEI L + P I VIT I +HL E + Sbjct: 136 IGLPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPDINVITNIGESHLEFLKTKENV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGIKTIYSFGKSKN------- 255 AK EI ++ T+ +N DD + + +KA++ AL ++ K+ + Sbjct: 196 FLAKTEIIPHIK--STLVINGDDKYLKNVKAENIEIVRALNLRNNEYEDKTSDFYYGDIH 253 Query: 256 -----ADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +F L+ + K C QS +E + + +G H N++M + + + Sbjct: 254 FDESGTNFFLKYFGKMC--QSTVERNYKT-------NVLGEHNVLNLVMAIAVAKQFGME 304 Query: 310 ---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A+K + + G R++ N G T I+++YNA+P SMK ++ S I Sbjct: 305 DKIISEAVKNIEL------TGMRFQIIEN-GNTTYINDAYNASPMSMKKSLETFSLI--F 355 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +I VLGDM E+GE H DL + + N ++L G + +L + + ++ Sbjct: 356 NDKLKIMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKENM 411 >gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus sakei subsp. sakei 23K] gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus sakei subsp. sakei 23K] Length = 458 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 207/461 (44%), Gaps = 50/461 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F + G + DGHDFI A + GA V PV Sbjct: 26 VTSVAFDARELRPGALFVPLAG-NRDGHDFINQARENGA--VATLWASARDDQPTDFPVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A +LA L+ ++AITGS GKTTTK+M L S + ++NN Sbjct: 83 LVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDMTAAVLGSQYNIHKTQANFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T+ M + + + E+GM G++ L+ + P +A IT I AH+ F ++I Sbjct: 143 IGVPQTILSMEANTEILVIEMGMDRPGQLHALSEIAMPDVAAITMIGEAHIEFFKTRDKI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTIYSF----GKSKNAD 257 A AK EI + L++ G + + D+ +L + + T+Y G++K Sbjct: 203 ADAKMEITDFLKEDGLLVYDGDEPLLNERVGDLERETFGSATTNTLYPIQVRAGETK-TQ 261 Query: 258 FQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 F+L W + E+ + G ++ + G YH+ ++ Sbjct: 262 FKLNAWPDVA----FEIPMMGAYNVNNALAAILIGQHYHIKPEVMS-------------- 303 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP-HGEGRR 371 KAL+ F R + Q ++ + YN+NP AAI VL S +GRR Sbjct: 304 --KALANFEVTRNRTEWLVGTAGQ---RMLSDVYNSNPT---AAIEVLRNFSHFETDGRR 355 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSE 428 IAVLGDM E+G S+ H LA VL I V+L G + L D L + +HY E Sbjct: 356 IAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIYPAEQLHYFE 415 Query: 429 TMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L + ++ D+VV+K+S+ +++ L E Sbjct: 416 KTQQPELITALAETIQPSDLVVLKASHGLHLEKVVAALTTE 456 >gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 509 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 145/506 (28%), Positives = 229/506 (45%), Gaps = 60/506 (11%) Query: 11 LQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65 + AI G S+ V P V G + DSR + F A+ G DGHDF A+++GA Sbjct: 9 IAAITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVA 68 Query: 66 ---------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA 108 ++V + + + ++ D+ V+GAL+ LA V +RL ++ Sbjct: 69 VLAARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQ 128 Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 I+ +TGS GKT+TK++L + +T A GS+NN +G+P T R F + E Sbjct: 129 GLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPYTALRCDEHTRFLVAE 188 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223 + +G IR LT + P + V+ + AHL F E IA AK E+ E L G Sbjct: 189 MSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIEALPAAADGGVA 248 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGK 279 LN DD F + ++ A + YS + + AD Q + + S+ + Sbjct: 249 VLNADDPFVSSMAPRTQAKVV--YYSANRPQAADAQYYATDIELDDVARPSFTFHAPGVE 306 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 M + G H N L + + + V+ A+ A ++ + R + Sbjct: 307 PMSIKLQVFGKHQVSNALAAA--AAAIESGVEPAVVARALSGHQTSSAHRMDVRTRRDGV 364 Query: 340 TLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+ID+SYNANP SM AAI+ L+ S + R IAVLG+M E+G + H L VLS Sbjct: 365 TVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRILGSVLSK 424 Query: 399 YNISHVWL--SGFHVLALKDALPRSIHVHYSET------------MDGLFLFIQSSLVD- 443 Y++ ++ G H +A+ +A H H +T ++ + + + D Sbjct: 425 YHVDYLVAVGEGAHTVAMVEAA----HAHGIQTELCPDIEAATAAVENILRVAPAGVEDW 480 Query: 444 -----GDVVVVKSSNSCGFYRLINLL 464 DVV+VKSSN+ +R+ L Sbjct: 481 SARAAKDVVLVKSSNAQRLWRVAEQL 506 >gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 455 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 208/445 (46%), Gaps = 22/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR + P F + + DGH ++ A GA + + D ++ S +PV Sbjct: 24 VTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNGATVALWQADH-QNVPS-HLPVI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A +LA + ++A++GS GKTTTK+ + + KT ++NN Sbjct: 81 IVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKDFIAAIGQTSYKTVKTPENFNNE 140 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP T+ MP D + + E+GM H G++ FL+ LV+P IA++T I AH+ F E I Sbjct: 141 IGVPQTILSMPTDTELLVIEIGMDHPGDLTFLSKLVKPDIALLTMIGEAHIEFFKTRERI 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K EI GL++ G + N D+ L + HA + SFG + D + Sbjct: 201 ADGKMEIINGLKEHGHLVFNGDEPLL-LERVGQHAHLLHD--SFGLNSTNDLFASEIDMT 257 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 Q+ + + + G + N L + + +L +AL+ E Sbjct: 258 PVQASFKTNQSAQRFTIPM--TGRYNVTNALSAITVGHLLHISDKKIAQALA-----EAP 310 Query: 327 GKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R G F ++ + YN+NP + K + + +G+RIAVLGDM ++G+ Sbjct: 311 ITENRTEWLDGQFGGKILSDVYNSNPTAAKEVLHFFADTP--TQGKRIAVLGDMLQLGDA 368 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYS-ETMDGLFLFIQS 439 S + H L E L+ I+HV+L G + +L++AL P Y+ + + L + + Sbjct: 369 SPALHASLMENLNPDKIAHVYLVGEEIKSLEEALLPIYPAGTVKRYAIDDPESLLKDLLA 428 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 L D +++K S+ ++N L Sbjct: 429 DLTSDDTIMLKGSHGVHLENIVNQL 453 >gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 503 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 188/375 (50%), Gaps = 26/375 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACI 140 V D AL ++A + + ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATP 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 139 GNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERL 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F FE + ++ + + I +G AD Sbjct: 199 GSLLGVAQTKGAIYAALPADGVAVINADDAFGIWFE-QQLQAQPVQGRCIVRYGLQIGAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + Q + V QG++ +V G H N L G+ L A + + A Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314 Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L+ HP GR + L G LID+SYNANP S+ AAI L+ GEG V Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLV 367 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G + H Sbjct: 368 LGDMRELGAEGLALH 382 >gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] Length = 478 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 128/452 (28%), Positives = 200/452 (44%), Gaps = 17/452 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + ++ DSRS+ P + F A+ G +D HDF+ V +GA V+V+ A++ + Sbjct: 25 PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRPPAATLDMTN 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D L +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 85 VAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 144 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 145 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 204 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADF 258 +E +A A + L G D + E + A G + + FG A Sbjct: 205 MVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYARVWKAAAGSRRVLDFGMDAGA-- 262 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ +EVQ G+ + +G H A+N L + +AL Sbjct: 263 VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATACALAAGVAPEVIAQALG 322 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F P +GR +R + + G +ID++YNANP SM+AAI L + R VLGDM Sbjct: 323 NFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALVTLP----APRWLVLGDM 375 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFI 437 E+G +FH ++ I V +G DA P + H +E L Sbjct: 376 GEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAFGPGAQHFASAED---LIEHG 432 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 ++ V+VK S R++ L+ + P Sbjct: 433 VPAIAPAATVLVKGSRFMRMERIVEALVLKDP 464 >gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] Length = 457 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 141/475 (29%), Positives = 215/475 (45%), Gaps = 36/475 (7%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR IA + F +KG DGHDFI A + G Sbjct: 4 TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ +A+ P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 A-VVTLSEKEIANH-----PYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 117 MLAHLLSTKYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ ++ L D E ++ Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-APDSLLLAPADPIVE-----NYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N M Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QVLDLPVT----GKYNATNA-MIAS 282 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V++ + I+ F E R ++ + YNANP +MK + S Sbjct: 283 YVALQEGVSEEQIR--QAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFS 340 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 341 AIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQM 400 Query: 422 I---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 401 FPIGHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVECLENE 455 >gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] Length = 449 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 137/441 (31%), Positives = 203/441 (46%), Gaps = 25/441 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR I F + G DGH+F A GA + + + I V V Sbjct: 25 VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIEP--PQDILVIPVT 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + A +LA A + + II ITGS GKTTTK+M+ ++ +TY G++NN +GV Sbjct: 82 DTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYKTQGNHNNELGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ P D I E+GM H GEI L+ L P A IT I AH+ N E IA A Sbjct: 142 PLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI GL+K G + D+ E +TI +FG ++ D Q ++ +Q Sbjct: 202 KMEITAGLKKDGFFMMPADEPLLEPFVPNL----TQTIETFGLTE-GDLQGDIVEESQDQ 256 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGK 328 + V ++ V +G + +N L+ +GI D AIK L+ F + R Sbjct: 257 TIFTVAGTTFTLPV----LGGYNVKNALIAIGIGRHFGV-ADEAIKEGLAHFQLTKNR-T 310 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 ++ A N ++ + YNANP +M + ++ GRRIAVL DM E+G S Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPLA--GRRIAVLADMLELGPDSAQM 366 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVD 443 H +A L + V+L G + AL+ AL + + L + +L Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLANTALADKVRYFAIDEKPQLIASLIETLEP 425 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 D +V+K SN G +++ L Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446 >gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium luteolum DSM 273] gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium luteolum DSM 273] Length = 476 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 132/442 (29%), Positives = 206/442 (46%), Gaps = 40/442 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87 +IDSR+I F A++G DGH F+ ++GA +V+ + S+ +P G Sbjct: 34 AIDSRAIDGPGIFIALRGESTDGHRFVQDVFRRGADFAMVSREW-HSLEKDPVPPPGKAY 92 Query: 88 --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L +LA R ++ I GS GKTTTKEM L + K + G++NN Sbjct: 93 IVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKEMTAAVLRTGFKVHVSRGNFNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVP+TL M D + + E+G++H GE+ LT + RP ++T I HL +E Sbjct: 153 HLGVPITLLGMRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEG 212 Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + A+ ++F+ L++ GTIF+N DDS S +Y G + + Sbjct: 213 VRLAERKLFDWLDRCRGTIFVNADDSRLADAATDSER---HVLYGTGSPEG--------R 261 Query: 265 QCSEQSWMEVQLQGK----------SMEVVHHGIGYHMAQNMLMTLGI---VSILTADVD 311 CS +S + V G+ +V G H QN + + + TA V Sbjct: 262 ICSAES-VSVGHGGRVSFTLTAGAVREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVK 320 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 ++ L P+ G KR + +G T+I+++YNANP SM+ A+ L+ + GRR Sbjct: 321 AGLEGLL---PESGW-KRLELS-EEGGVTIINDTYNANPDSMRLALDTLADMPC--SGRR 373 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 IAV+GDM E+G ++ H + L+ I + G LP H++ D Sbjct: 374 IAVIGDMLELGATAEDEHRSIGRYLAGLPIDMFFTFGALAGLGGRELPERCRGHFT-GRD 432 Query: 432 GLFLFIQSSLVDGDVVVVKSSN 453 L +Q + GD V+ K S Sbjct: 433 ELLHALQEEVRSGDAVLFKGSR 454 >gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] Length = 468 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 217/457 (47%), Gaps = 39/457 (8%) Query: 18 SIGIVPQGFVNG---------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 S+G P GF G +SIDSR I FFA+KG DGH+++ A + GA Sbjct: 12 SVG-TPAGFALGEAVEWCDPSVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCA 70 Query: 69 VVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VVN + + S+ V D + AL +LA R + +I I GS GKTTTKE Sbjct: 71 VVNREWYSRHAESVHQEGWRYLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKE 130 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L + K + G+ NNH+GVPLTL + D + E+G++H GE+ LT + RP Sbjct: 131 MTAAVLGTTYKVHMSKGNLNNHLGVPLTLFGLRDTHDLAVVEMGINHPGEMELLTSIARP 190 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A++T I HL ++ +A A+ ++ + + + GT+F+N D+ LL A A Sbjct: 191 DFALLTNIGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDA--RLLAA---ARE 245 Query: 244 IKTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I+ +G ++ + W + + ++ + S+ ++ H G H N + Sbjct: 246 IQNRVDYGPERDGNL---IWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVA 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + S ++ + L P +G KR + G + +++YNANP S+ A+ Sbjct: 303 AAAVGSCFNVPLNAIAEGLGSLVPADGW-KRLE-FIEAGGIRIFNDTYNANPDSVTMALK 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-VLALKDA 417 + +I GRR+ V DM E+GE+S + H + +++ V+ G H L+ A Sbjct: 361 TVCEIPC--SGRRVLVFADMLELGEVSDAEHRRMGALVAQLPFDAVYTYGEHAALSCLSA 418 Query: 418 LP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 P R + ++ +D L ++ D++++K S Sbjct: 419 GPKCRGHYTSHAHLLDALKAYLSQD----DLLLLKGS 451 >gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] Length = 461 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 222/459 (48%), Gaps = 41/459 (8%) Query: 23 PQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGS 80 P G + + +DSR FFA+KG DG ++ +KGA VVV A ++ Sbjct: 28 PNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVVPKSRAAEALAR 87 Query: 81 LSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + PV +DVL +L++LA R S TI ITGS GK+TTKE L + + T Sbjct: 88 VRCPVLAAEDVLSSLHELAQNYVQRFPSVKTI-GITGSCGKSTTKEALARITAVLGSTAK 146 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ N+ G+PL++ + +G+FE+G+ H+GE+ + +++P IA++T + +HL Sbjct: 147 TPGNLNSEYGLPLSIFGLDETSRYGVFEMGIDHVGEMDRMVGMLKPSIALLTNVGISHLE 206 Query: 199 NFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 E IA KA IF GLE F++ +L++ + ++ Y + D Sbjct: 207 KMGSQEIIAEQKARIFHPGLEAG---FVSSSCKHLDLIQTIAARSLVR--YDAKEISAVD 261 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L W+ E V+ +G H+ ++++ + + L A+ +AL Sbjct: 262 LGLDGWQLTYEGHTFTVK-----------SVGRHLLEDVVGAIKVGRYLGANAGDIAEAL 310 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F P GR +R + T+ID+SYNA+ S + ++ LS +S +G + VLG Sbjct: 311 EGFEPMHGRSFVHRSDV-----TIIDDSYNASLDSTNSILTYLSGLS--WKGSKKVVLGP 363 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGL 433 M E+G+LS+ H +A ++ + + +L G + L LK R V Y++ + L Sbjct: 364 MKELGKLSRQAHRMVARTVAASSFNQTYLFGSEMEEASLELKKLGYRG-QVKYTKDFEEL 422 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +Q L GD+ ++K+S S RLI P+IQ Sbjct: 423 ESMVQKQLKGGDLFLLKASRSVAMERLI-------PSIQ 454 >gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] Length = 449 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 137/441 (31%), Positives = 203/441 (46%), Gaps = 25/441 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR I F + G DGH+F A GA + + + I V V Sbjct: 25 VEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHPTIEP--PQDILVIPVT 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + A +LA A + + II ITGS GKTTTK+M+ ++ +TY G++NN +GV Sbjct: 82 DTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYKTQGNHNNELGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ P D I E+GM H GEI L+ L P A IT I AH+ N E IA A Sbjct: 142 PLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITLIGEAHIENLGSREGIAKA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI GL+K G + D+ E +TI +FG ++ D Q ++ +Q Sbjct: 202 KMEITAGLKKDGFFMMPADEPLLEPFVPNL----TQTIETFGLTE-GDLQGDIVEESQDQ 256 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGK 328 + V ++ V +G + +N L+ +GI D AIK L+ F + R Sbjct: 257 TIFTVAGTTFTLPV----LGGYNVKNALIAIGIGRHFGV-ADEAIKEGLAHFQLTKNR-T 310 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 ++ A N ++ + YNANP +M + ++ GRRIAVL DM E+G S Sbjct: 311 QWVTAGNGA--AILSDIYNANPTAMGLVLDSFRKLPLA--GRRIAVLADMLELGPDSAQM 366 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVD 443 H +A L + V+L G + AL+ AL + + L + +L Sbjct: 367 HEQMAAHLD-DSFQLVFLYGKEMQALQKRLANTALADKVRYFAIDEKPQLIASLIETLEP 425 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 D +V+K SN G +++ L Sbjct: 426 SDSLVIKGSNGMGLSEVVDAL 446 >gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] Length = 469 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 180/387 (46%), Gaps = 20/387 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A++KG +++ A G + VD Sbjct: 45 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDERYIL--VD 102 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ + +YNN +GV Sbjct: 103 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 162 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 163 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 222 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQC 266 K E+++ L+ G +FLN + L + I ++G+ + AD Q + C Sbjct: 223 KGELYDFLKAHGCLLFLNESNPD---LTEMAEQRAFDRIITYGQDETADVQGYVVSCAPC 279 Query: 267 SEQSWMEVQLQGKS-----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + W L EV H IG + NML + I AL + Sbjct: 280 LKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYV 339 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + A N+ LI ++YNANP+SM AAI + ++A+LGDM E+ Sbjct: 340 PHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFQLMEVEN---KMAILGDMREL 392 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 G+ S H + E+L +I +VWL G Sbjct: 393 GDASAEEHQKVVELLKATDIRNVWLVG 419 >gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M13399] Length = 452 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 177/364 (48%), Gaps = 23/364 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + AS+ Sbjct: 23 LVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----A 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA A R + ITGSVGKTT KEML L A G+ Sbjct: 79 LKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 455 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 140/468 (29%), Positives = 225/468 (48%), Gaps = 32/468 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TFH++ Q + F + +DSR + + F A+ G DGH F+ +KGA Sbjct: 7 TFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKGA 66 Query: 66 GLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V+ D + + + +P+ GVDDVL AL KLA + + I+AITGSVGKTTTK Sbjct: 67 AAAIVSNDFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTTTKH 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L L G+ N+ IG+PL+ L D I E+GM+ G I+ L + Sbjct: 127 LLFQLLQKHFSVAFSPGNQNSQIGLPLSILNHYHGHEDVLILEMGMTAQGHIQKLIEIAP 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA++T + H++ +E IA AK EI KT + + F+ LL H G Sbjct: 187 PDIAIVTALELVHVAGVHSLENIAHAKREILTH-PKTMLGLIPSEIPFYALL----HETG 241 Query: 244 IKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLG 301 SF S AD+ LR+ +Q QG S + +G H N L + Sbjct: 242 TCRKQSFSTLSIQADYCLRE----QDQHLQIRDSQGLSPLLPRLPFLGKHNQHNFLAAIS 297 Query: 302 IVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +D+ I L++ P+ +R + +G I++SYNA S+KAA+ Sbjct: 298 ACRALGMTWSDIQQVIPTLTL--PE----RRLEQVIKKGIL-FINDSYNAALTSVKAALD 350 Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 L Q S G+RI V+G+M E+G S++ H ++ +LSL + + G L ++ Sbjct: 351 ALPPPLQFS----GKRIGVIGEMVELGTFSEACHREVG-ILSLAKLDLMICYGDGCLPIE 405 Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + VH + T + + ++ ++ GDVV++K SN ++++ Sbjct: 406 EVWKKHNKPVHLTLTFEQVIAELKQHVLPGDVVLLKGSNKKQLWKVLE 453 >gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] Length = 463 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 130/442 (29%), Positives = 209/442 (47%), Gaps = 21/442 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + IDSR + + FF I+G ++DGH+F+ A GA VVV+ M P Sbjct: 26 IAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDAGAVAVVVSQFMPEFEDK---PTI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + AL ++A R++S A +IA+TGS GKTT KEML LS + + NN Sbjct: 83 MVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVKEMLAHVLSGSGSVHKNFMNLNNQ 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PL++ + + + ELG+S ++ L + +P +A++ I PAHL +E + Sbjct: 143 LGLPLSMLEATGEETYWVMELGISLPHDMGELGPIAQPDMAIVHNIGPAHLEGLGSLENV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K+ +F+ + G D ELL ++ + +S + +NA++ Sbjct: 203 ADQKSSLFKYIRPEGVALCCKD---HELLWEAANKISKPVPFS-SQDENAEYYSTLLHTL 258 Query: 267 SEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV-DTAIKALSVFHPKE 324 + S ++ ++ EV+ G H A+N L ++ + A + +V PK+ Sbjct: 259 PDGSGRFLIKAGEETAEVILPTCGSHFAENAAAVTCAAHQLGMELTEIAERLATVELPKQ 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R+ C G +TLID+SYNANP SM AI +I+ + + VLGDM E+GE Sbjct: 319 ----RFHCH-THGKWTLIDDSYNANPLSMNRAIDTAKRIA--DDRPLVLVLGDMLELGEE 371 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H DL ++ + G H + S V + ++ L + L D Sbjct: 372 AGCAHCDLGSKIAETKPDATFYHGKHYSEVASQTNGSTLVPVKQPIEFLNGIHELGLSDA 431 Query: 445 DVVVVKSSNSCG----FYRLIN 462 VV+ K S SC FY L N Sbjct: 432 -VVLFKGSRSCHMEDYFYALNN 452 >gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] Length = 448 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 121/384 (31%), Positives = 178/384 (46%), Gaps = 18/384 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+ +A G IG +N + D+R I F A+KG +DGHD+I AVQ+GA Sbjct: 6 TLSDIAKACDGELIG--EDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQAVQEGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V V +D V + + + VF G + +L R K ++ ITGS GKTT K+ Sbjct: 64 --VGVVSDRVVDVPNY-VKVFDTTLAYGVIARLI---RDAFKGPVVCITGSNGKTTVKDW 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L +L+ K + NN IGVP TL + D D + E G S GEI L + P Sbjct: 118 LAQSLTD-KNVLKTRANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLAKVAFPD 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V+T +H GIE+IA K + G ++ LN DD +F+ + G + Sbjct: 177 IVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYWCGLA---GDR 233 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +YSFG +++AD + +E S G + V G G H N + ++++ Sbjct: 234 QVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQLVTIAGAGKHQIANGMAV--VLAM 291 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +D A + P G+ R G LI++ YNA+P S++AAI VLS S Sbjct: 292 LIIGIDFKQAADKLASPVLVSGRLERLKTKNGAL-LINDCYNASPKSVEAAIDVLSIQSV 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFH 389 +LG + E+G H Sbjct: 351 E---ETWLILGGLAELGAQRDDIH 371 >gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] Length = 452 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 184/369 (49%), Gaps = 16/369 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G LN D++ + +A +G + ++ F + N+DF + Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + +Q +++V+ G H N L + + AD+ L+ G Sbjct: 256 TSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R +Q L+D+SYNAN SM AA+ VLS++ G R V+GDM E+G S Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368 Query: 386 QSFHIDLAE 394 + H ++ E Sbjct: 369 AACHREVGE 377 >gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] Length = 461 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 134/472 (28%), Positives = 219/472 (46%), Gaps = 50/472 (10%) Query: 5 WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKG------------ 48 ++ ++ + + G I I + FV+ + DSR I F I Sbjct: 3 YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62 Query: 49 ---PHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVA 101 DGH FI A++ GA VAS I S+P+ V D AL LA Sbjct: 63 YTIAEKDGHKFINSALKNGA---------VASFADHIVQTSLPLILVSDTQLALWALAKN 113 Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 + IA+TGS GKTTTK+++ LS K + + S NN IGVP T+ MP D + Sbjct: 114 YLNKINPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+GM HLG++ L+ ++ P+IA+IT I AH+ F ++IA AK EI +GL+K G Sbjct: 174 IAVIEMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDG 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280 T + D+ LLK ++ + + +FG+ ++ +F W Q ++ + ++ ++ Sbjct: 234 TFIYDGDEI---LLKERADLFSGEKV-TFGEKESNNF----WVSQIEDKKRLSFKVNQET 285 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V + +G A N + + T + + R + + + T Sbjct: 286 YSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGE---T 340 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +I + YN+NP + AI +L +G++I VLGDM E+G+ S H+ L + Sbjct: 341 IISDVYNSNPTAAIKAIEILKDFPT--QGKKILVLGDMLELGDQEVSLHLALKAPIERAA 398 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 V+L G + +L A+ + + L +QSSL DVV++K+S Sbjct: 399 FDEVYLVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKAS 448 >gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 321 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 162/329 (49%), Gaps = 62/329 (18%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +W L +A+ GI F+N + +S+ + + F A++G DGHD++L A+ Sbjct: 2 IWNSETLNKAL-----GITISNFINCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAI 55 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+V+ + + + V+D AL K+A+ R SKA IAITGSVGKT+ Sbjct: 56 DKGAVAVIVSKQIDIADKD---KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTS 112 Query: 122 TKEML-------------------------------TIALSSIKKT-------------- 136 TKE L T A + +++ Sbjct: 113 TKEALKTLLTEANYKSLDLLYNEANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEAS 172 Query: 137 ------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +A G++NNH+G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+IT Sbjct: 173 YIRGLIFASRGNFNNHLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 232 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I+ AHL F+ EEIA AK EIFE K +N D + + + + L I I+SF Sbjct: 233 NISEAHLEFFNSFEEIAEAKCEIFENFSKNDIAVINADTNCYNKILSILKKLSITDIHSF 292 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G+S +L ++ EQ +++ ++ K Sbjct: 293 GRSSKTSAELVLYENLGEQVYLKYKINNK 321 >gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] Length = 470 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 119/377 (31%), Positives = 176/377 (46%), Gaps = 35/377 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F AIKG +D HDF+ ++ V+V + + S+P V Sbjct: 29 VSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV----ARTPENWSVPAIRVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R + ++A+TGS GKTT KEM+ A A G++NN Sbjct: 85 DTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL R+ + ELGM+H GE L L P +AV+ H + +E + Sbjct: 145 IGLPLTLFRLHAAHRLAVVELGMNHPGETEQLAKLAEPTVAVVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L GT DD++ + + A G + I DF L ++ Sbjct: 205 ALEHASVIHALSPEGTAVFPADDAYASIWRVA--ATGNRII---------DFALNNAERT 253 Query: 267 SEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +E + ++ GK ++V +G H A N L +D + L Sbjct: 254 TEAA-VQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNALAATSAALAAGVSLDAIQRGL 312 Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375 F +GR + + AL T+ID++YNANP SM+AAI VL S+ SP R+ V+ Sbjct: 313 ESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDVLASRESP-----RVLVM 367 Query: 376 GDMCEMGELSQSFHIDL 392 GDM E+G+ FH ++ Sbjct: 368 GDMGEVGDNGPVFHREI 384 >gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 458 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 141/473 (29%), Positives = 204/473 (43%), Gaps = 27/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + A G P V G++ DSR P + F A+ G DGHDF A Sbjct: 1 MQPL-SLAQIATATGGRVTDADPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGK 119 V+ GA V+ L +P V+D L AL A A + +IA+TGS GK Sbjct: 60 VEAGAVAVLAAR-------PLGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ L T GS+NN IG+PLT D + E+G G I +LT Sbjct: 113 TSTKDLIAQVLDRAGATVFTQGSFNNEIGLPLTALEATADTRHLVVEMGARGQGHIAYLT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLK 236 + P I + + AH F G + A AK E+ E L + G LN DD + Sbjct: 173 GITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMS 232 Query: 237 AKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A++ A + +FG + AD + ++ + V +G H N Sbjct: 233 ARTKA----EVVTFGVERAADVYATGVALDGRGRASFTLHTPAGQAPVRLQVVGEHQVPN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 L + DV+ AL+ P EG R R T++D++YNAN S Sbjct: 289 ALAAAAVAGAAGMDVEQIGGALTAAVPVSEG---RMRVTERPDGVTVVDDAYNANTDSTS 345 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHV 411 AA+ L+ + GR IA+LG+M E+G+ S+ H LA L + + V + H Sbjct: 346 AALRALAHLGRESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHA 405 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 LA D V G +L + L GDVV+VK +N+ L + L Sbjct: 406 LA--DEYGPGGQVVADRDAAGEWLE-RYGLRAGDVVLVKGANALKLGELADAL 455 >gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 464 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 183/387 (47%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQTFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +++ +G H N L + + AD+ L Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIKINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + +G+ Y +N ID++YNAN SMK+A+SVL RI +GD Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G+ S++ H +A+ + N+ V Sbjct: 369 MAELGDESEACHQQVADFVREANLDLV 395 >gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae L20] gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 464 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 182/387 (47%), Gaps = 23/387 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V S D+R FFA+KG ++D H ++ +AV++G+ VVV + +S+P Sbjct: 24 LVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVEREC-----EISVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------ 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 79 IVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEDEVLY 135 Query: 140 -IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP+TL R+ F + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 136 TFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTEITQPDACLVNNVAAAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNAD 257 F +E +A AK EI+ GL+ G +N + + K H L + + AD Sbjct: 196 GFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQKEIGEHELQSFSYIGSDQDSYAD 255 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + S + +E+ +G H N L + + AD+ L Sbjct: 256 FWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISNALAATSLSMAVGADLQAVKSGL 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + +G+ Y +N ID++YNAN SMK+A+SVL RI +GD Sbjct: 316 E--QRSQVKGRLYPVEVNDHCL-FIDDTYNANVDSMKSAVSVLKNYPAF----RIFAVGD 368 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 M E+G S++ H +A+ + N+ V Sbjct: 369 MAELGGESEACHQQVADFVREANLDLV 395 >gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] Length = 438 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 130/443 (29%), Positives = 204/443 (46%), Gaps = 25/443 (5%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V+ SIDSRS P + F I DGHDFI AVQ GA + + + ++G+ + Sbjct: 19 PDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAPVYLTDRAPDPALGATA 77 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V D AL L R +++ +TGSVGKT+TK++L L + +T A S Sbjct: 78 VQVA---DTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLLAGVLGTTFRTAASEKS 134 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN +G+PLTL P D + + E+G +G I L + P + V+T + HL F Sbjct: 135 FNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIASPTVGVLTRVEAVHLEMFGS 194 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 ++++A AK E+ E L G LN D + +++ A + ++G AD + Sbjct: 195 LDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA----RVLTYGVDPGADVRATD 250 Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 E ++ + + V G H N L + ++ + L + Sbjct: 251 IVLDDELRASFTLHSPWGTTAVRLGARGEHQVSNALAAAAAGGGIGVPIEKIAEGLLGAN 310 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 G R + T+I+++YNANP SM A +S L++I GRR AVLG M E+ Sbjct: 311 LS---GLRMELSTTAAGVTIINDAYNANPTSMAAGLSALARID---AGRRFAVLGTMAEL 364 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ S + H ++A+ V L G V+A+ + + H S +DG + L Sbjct: 365 GDDSAAAHREVAD-------QAVAL-GVTVIAVDEPAYGAGVTHVS-GVDGAVDAL-GDL 414 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 GD V+VK S R+ L Sbjct: 415 RSGDAVLVKGSRVAALERVAQAL 437 >gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 453 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 215/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A +G + + +S D+R I F A+KG +++G++++L A KG Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKG 63 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A + +V+ ++ + L + + V + AL LA R + ++ ITGS GKT+T Sbjct: 64 AKIAIVD-EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L + Sbjct: 123 KDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELAEIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I +H+ E I AK EI +K T+ + +D F L + + Sbjct: 183 SPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAEYKI 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +KT G +N + S V K E G H N+++ + I Sbjct: 243 -VKT----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIAI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L E R G F+++++ YN++P ++K+AI V+ Sbjct: 298 AKELGVSFEEMKRGLKNI---EATSMRLELIKKDG-FSILNDCYNSSPVAVKSAIDVMKN 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 IEGK---RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYGEGC 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 411 TVY--ENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] Length = 474 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 135/452 (29%), Positives = 209/452 (46%), Gaps = 31/452 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR + P F A +G H DGHD+ AV V + + +P V Sbjct: 31 VVIDSRQVEPGSLFAAFEGEHVDGHDYAGRAVAA-------GAVAVLAARPVGVPAIVVP 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV AL LA R ++A+TGS GKT+TK+++ L T GS NN IG+ Sbjct: 84 DVEKALGALARTVVERLGTDVVALTGSAGKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT + + + E+G +G I +LT L P I ++ + AH+ F G E IA A Sbjct: 144 PLTALKATAETRHLVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREAIAQA 203 Query: 210 KAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ E L + G LN DD + A++ A +T+ FG++++AD + + + Sbjct: 204 KGELVEALPSEAEGGVAVLNADDLLVRAMSARTKA---RTVL-FGEAEDADVRATEVRMT 259 Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + Q + +V G H N L + +L + ALS G Sbjct: 260 PAGQPSFTLHTPTGCSDVTLRLYGEHHVSNALAAAAVAHVLGMPAEEIATALS----GAG 315 Query: 326 RGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCE 380 R+R + + T+++++YNANP SM+AA+ L + G+ GR AVLG M E Sbjct: 316 TLSRWRMEVTEREDGVTIVNDAYNANPESMRAALRALVAMGEAGKADGGRTWAVLGPMAE 375 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLF 434 +G+ S + H + + N+S + G + A + V S+ + Sbjct: 376 LGDDSLAEHDAVGRLAVRLNVSRLVAVGGREASWLQLGAYNEGSWGEESVLVSDAQAAVD 435 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L ++S L GDVV+VK+S S G R+ LL+ Sbjct: 436 L-LRSELRPGDVVLVKASRSVGLERVALALLD 466 >gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] Length = 432 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 211/441 (47%), Gaps = 30/441 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G V V+ Sbjct: 16 VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTRYIV--VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K TIF++ D+ + + + H + + +Y G + N+ + +W Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K +E + EVQ + IG + N L + I + + KAL+ + P+ Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + A N TLI ++YNANP SM A+IS + ++ +LGDM E+G+ Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S H +A+ L V L G A R + Y + + L +Q Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHSYQSYPD-VTALIAELQREKPC 411 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 G +++K SN ++ L Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432 >gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] Length = 433 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/383 (29%), Positives = 187/383 (48%), Gaps = 19/383 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A+KG ++G+ F A++KG +++ A G+ + + V Sbjct: 16 ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEGNDRLIL--VK 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A K+A R +I ITG+ GKTT+KE+++ LS G++NN +GV Sbjct: 74 DALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNVGRAHLEGFGSFEGVKLT 193 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ +FLN + + A+ + + I S+G++ + Q + C+ Sbjct: 194 KGELYDYLKANDCLLFLNESNPDLSEMAAQRN---FERIISYGQNDMVNVQ-GEIIDCAP 249 Query: 268 --EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 W EV + K EV+ H +G + NML + + + AL + P Sbjct: 250 FLHFRWREVGSEWK--EVMTHLVGAYNLDNMLAAIALGLHFSVAPQQICHALETYVPSNN 307 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + N+ L+ ++YNANP+SM AAI ++ ++A+LGDM E+GE++ Sbjct: 308 RSQLTETVHNK----LVVDAYNANPSSMVAAIENFRLMNVEN---KMAILGDMRELGEVT 360 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 H + E L +++VWL G Sbjct: 361 DVEHQKVVEQLKAAGLTNVWLVG 383 >gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 119/375 (31%), Positives = 186/375 (49%), Gaps = 24/375 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR FFA+KG ++D HD+++ A ++G VV +I L Sbjct: 25 VENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAEQGCVAAVVEHPTEGNIAQLI---- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + ++A+TGS GKTT KEM L + + G+ Sbjct: 81 -VKDSRLALGQLAKWLREKINPKVVAMTGSSGKTTVKEMTASILQQCAVDFDDVLFTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H+GEI + T L +P +A++ + AHL F Sbjct: 140 FNNDIGVPLTLLRLTEKHKFAVIELGANHIGEIAYTTALAQPDVALVNNVMAAHLEGFGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261 ++ +A+AK EIF GL G +N ++ + + + +G + F + ADF Sbjct: 200 LDGVATAKGEIFRGLTHHGVAIINQAHNYQQKWQKE---IGQHEVQYFSYDNPQADFYAE 256 Query: 262 KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q SEQ S++ QG ++++ +G H N L + + A + K L Sbjct: 257 HI-QFSEQGASFVLHTPQG-NVQIDSPYLGEHNVSNALAATALAMNVGATLAQVKKGLET 314 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P +G+ + L+D++YNAN SMK+AISVL + R+ V+GDM Sbjct: 315 --PSLVKGRLFPIHPCDNLL-LLDDTYNANVGSMKSAISVLQKYPAF----RVFVVGDMG 367 Query: 380 EMGELSQSFHIDLAE 394 E+G+ + H ++ E Sbjct: 368 ELGDNTPLCHQEVGE 382 >gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] Length = 452 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 179/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA A R + ITGSVGKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 432 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 129/430 (30%), Positives = 208/430 (48%), Gaps = 30/430 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G V V+ Sbjct: 16 VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDTRYIV--VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K TIF++ D+ + + + H + + +Y G + N+ + +W Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K +E + EVQ + IG + N L + I + + KAL+ + P+ Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + A N TLI ++YNANP SM A+IS + ++ +LGDM E+G+ Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S H +A+ L V L G A R + Y + + L +Q Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHPYQSYPD-VTALIAELQREKPC 411 Query: 444 GDVVVVKSSN 453 G +++K SN Sbjct: 412 GKTILIKGSN 421 >gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis CU385] gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] Length = 439 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 8 VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 64 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 65 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ F Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 182 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 183 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 298 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349 Query: 380 EMGELSQS 387 E+GEL + Sbjct: 350 ELGELGED 357 >gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 22/373 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 V + AL ++A A+ R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVKNTELALARIA-ASMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + A + + I +G AD Sbjct: 198 LCSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQPVQGRRIVRYGLQIGAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + Q + V QG++ +V G H N L G+ + Sbjct: 258 ITARQLQLQAGATQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLALGAGIALPVIAAG 316 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ HP GR + L G LID+SYNANP S+ AAI L+ GEG VLG Sbjct: 317 LAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369 Query: 377 DMCEMGELSQSFH 389 DM E+G + H Sbjct: 370 DMRELGAEGLALH 382 >gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58] gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria meningitidis MC58] Length = 455 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGELSQS 387 E+GEL + Sbjct: 366 ELGELGED 373 >gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia proteamaculans 568] gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia proteamaculans 568] Length = 453 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 210/455 (46%), Gaps = 44/455 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R + F A+KG +D HDF + AV GAG ++V+ ++ + +P V Sbjct: 27 VTTDTRQVTTGCLFVALKGERFDAHDFAVDAVAAGAGALLVSKRLL-----VEVPQLVVK 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R + ++A+TGS GKT+ KEM L + G++NN IGV Sbjct: 82 DTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECGEVLYTAGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ DF + ELG +H+GEI + T L RP A++ +A AHL F + +A A Sbjct: 142 PLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWKQCS 267 K EIF GL G LN D++ + ++ L KT++ F ++ DF Sbjct: 202 KGEIFAGLPADGVAILNADNNDWPHWQSM---LDGKTVWRFSPQAAEGVDFFAS------ 252 Query: 268 EQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTAIKA 316 +VQ+ GK + H G H N L + A ++ + Sbjct: 253 -----DVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAAALAMSAGASLEAVRQG 307 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L GR + AL+ L+D+SYNAN SM AA VL+++ G R+ V+G Sbjct: 308 LKQLQAVPGR--LFPIALSDHQL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVG 360 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF-- 434 DM E+G ++ H + E L + V G L +A H + Sbjct: 361 DMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQVLTEASGNGEHFQDKAAVIARVAE 420 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 L + +++ V++K S S +++ L E+ P Sbjct: 421 LLSEHAVI---TVLIKGSRSAAMEQVVRALQEKAP 452 >gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] Length = 476 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 23/389 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ KG +V+ A G+ + VD Sbjct: 51 VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAGNNRFIL--VD 108 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A +LA R +I ITG+ GKTT+KE+++ L+ K + +G++NN IGV Sbjct: 109 NALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNNDIGV 168 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL M D + + E+G SH +I L V P +IT + AHL F E + + Sbjct: 169 PRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKNT 228 Query: 210 KAEIFEGLEK-TGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQ-------- 259 K E+++ L+ +FLN + E+ + + + + ++G+ AD + Sbjct: 229 KGELYDYLKAHNALLFLNESNPDLVEMAEQRE----FERVITYGQDNTADVKGEVVSCAP 284 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 L K+ + QS Q+ EV + IG + NML + I + AL Sbjct: 285 LLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHFGVEPQKICHALES 344 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + P R + N+ LI ++YNANP+SMKAAI + ++A+LGDM Sbjct: 345 YVPSNNRSQLTETKDNK----LIVDAYNANPSSMKAAIENFRLMDIKN---KMAILGDMR 397 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G+++ H + + L + +VWL G Sbjct: 398 ELGDVTAEEHQRVVDELIASGLENVWLVG 426 >gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 119/380 (31%), Positives = 187/380 (49%), Gaps = 21/380 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR FFA+KG DG+ F A+ KGA V++ + V + Sbjct: 21 VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDNPRYYQEDERYLLV---N 77 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + IIAITGS GKTTTKE++ LS YA G++NNHIGV Sbjct: 78 DTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGNFNNHIGV 137 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P++L + + + E+G +H+GEI L +V+P +IT I+ AHL F GI + Sbjct: 138 PISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNISHAHLEGFGGINGVIKG 197 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ L++ G + F+N DS LL + + IY + D+ + K E Sbjct: 198 KSELYTYLKQHGGVPFINSADSV--LLNVANGF--VNPIYY---PQKGDYYYCELK---E 247 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V +S V IG H N+ L I + + A+ ++P R + Sbjct: 248 ANPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMVNTAIQAYNPSNNRTQ 307 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +G +++ ++YNANPAS++AA+ S + ++ +L DM E+GE S +F Sbjct: 308 ----LIKKGTNSILLDAYNANPASVQAALESFSFLK---SMYKVLILADMNELGEESLAF 360 Query: 389 HIDLAEVLSLYNISHVWLSG 408 H + E + + + L G Sbjct: 361 HQAIIEKTAQQDYDAILLHG 380 >gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK330] Length = 456 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 129/441 (29%), Positives = 210/441 (47%), Gaps = 29/441 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F +KG DGHDFI A +GA + + L VDDVL Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGTYIL------VDDVL 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 + +LA + + ++A+TGS GKTTTK+ML L++ KTY G+YNN IG+P T Sbjct: 85 TSFLRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYT 144 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + MP D + + E+G HLG+I L+ L +P ++T + AHL F EIA K + Sbjct: 145 VLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQ 204 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 I +GL K G + + D E L A + FG +AD L + ++ + Sbjct: 205 IADGLRKDGLLIVPADKIVNEFLPADCK------LVRFG--PDADIFLTRLEERKDSLSF 256 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E + +++ G Y+ M+ + ++ A +A S R + ++ Sbjct: 257 ECNFLEQRIDLPVTG-KYNATNAMIAAYAALQEGISEAAIA-QAFSELELTRNRTE-WKK 313 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N ++ + YNANP +M+ + S I + GR++AVL DM E+G S+S H + Sbjct: 314 AGNGA--DILSDVYNANPTAMRLILETFSTIPTNLGGRKLAVLADMKELGADSKSMHGSM 371 Query: 393 AEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHY-----SETMDGLFLFIQSSLVD 443 L+ ++ ++L G + AL K+ P +++ + + L ++ L Sbjct: 372 ITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPGKVLYFIKNDEKDQFEQLTKAVREKLTP 431 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 D +++K SNS +L+ L Sbjct: 432 TDQILLKGSNSMNLAKLVEDL 452 >gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 489 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 205/462 (44%), Gaps = 56/462 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 + IDSR + F A++G DGHDFI A +G +V +A L + Sbjct: 30 IRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRGRLADPSQLGLDRP 89 Query: 85 ---------------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 + VD L A+++LA R + ++ ITGSVGKT+TK Sbjct: 90 FVLLDPDQGQIANEAPANAFFLISVDQTLTAMHRLATRYRQQQDLVVVGITGSVGKTSTK 149 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L L+ +T+ SYN+ +PL + + + + E+G+ + G++ LT + + Sbjct: 150 EVLAAMLAPTMRTHKSPRSYNSENTLPLVVLGIEPEHQIAVLEMGIYNKGDLALLTTIAQ 209 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I ++T + +HL IE +A AK+E+ + L G LNYDD ++ + A Sbjct: 210 PQIGIVTNVGASHLERMHTIENVAEAKSELVQALPADGWAILNYDDQRVRAMQQVTKA-- 267 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWM-----EVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++++G AD W E + + +G+ + IG H L Sbjct: 268 --QVFTYGLDPEADL----WADNIESRGLDGIGFDAHYRGEQWHIKLPLIGLHSVHTALA 321 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +L D+ I+ L + R G TLID++YNA+P S AA++ Sbjct: 322 AAAVGIVLGLSWDSLIQGL-----RSSAQLRLLSYPAVGGATLIDDTYNASPVSCIAALN 376 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHV 411 +L+++ +GRRIAV GDM E+G +S H D+ + L + W+ Sbjct: 377 LLAEL----QGRRIAVFGDMAELGPHDESGHRLVGVRAADVVDQLYVVGEKARWIGEE-- 430 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 A++ LP VH L +QS+L D V+VK S Sbjct: 431 -AIEVGLPAE-QVHVLPDKAALIAALQSTLQANDYVLVKGSR 470 >gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] Length = 457 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 205/448 (45%), Gaps = 20/448 (4%) Query: 21 IVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I+ QG N I D+R+I F A++G +DGHDFI AV G V+V+ D Sbjct: 17 ILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIVD-DAGR 75 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +F V + L A LA+ R R ++A+TGSVGKT+T+ ++ LS Sbjct: 76 LYPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTSTRSLIATVLSQKYNV 135 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 ++NN IG+P TL ++ + + E+GM LG+I+ L + P I V+T + +H Sbjct: 136 LQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLGQIKELADIAEPTIGVVTNVGKSH 195 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + IA AK E+ E L GT LN DD + K KT+ SFG +NA Sbjct: 196 IELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRVAAMAEKCKG---KTV-SFGIKENA 251 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 K + + + M+V +G H N L + + +L K Sbjct: 252 PVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVYNALAAVAVGRLLGMSEHQMQKG 311 Query: 317 LSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ + +G R L + T I+++YNANPASM A+ L ++ GR+IAVL Sbjct: 312 LAEY-----KGVPMRQELIHLEDLTFINDAYNANPASMAEAVHTLMSVAS---GRKIAVL 363 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGL 433 G M E+G+ +++ H + +L+ + G + D + +V+ T Sbjct: 364 GGMLELGDWTKAEHEKIGALLAAEKADALIALGDEATYIADGAEQKGMKNVYKVRTHKEG 423 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ V GD +++K S +++ Sbjct: 424 AEILRKIAVAGDTILLKGSRGFAMEKIL 451 >gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha275] gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis NZ-05/33] Length = 452 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA R + ITGSVGKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Xylanimonas cellulosilytica DSM 15894] gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Xylanimonas cellulosilytica DSM 15894] Length = 488 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 222/458 (48%), Gaps = 44/458 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P F AI G DG DF AV GA LV+ ++ +PV VDDV Sbjct: 32 DSRLVEPGALFAAIPGARVDGADFAAGAVADGAVLVLAAREID------GLPVVVVDDVA 85 Query: 93 GALNKLA--VAARLRSK---ATIIAITGSVGKTTTKEMLTI-----ALSSIKKTYACIGS 142 AL LA V RLR+ + +ITGS GKTTTK++L A T A GS Sbjct: 86 AALGDLARVVLERLRAANPAVKVFSITGSAGKTTTKDLLGRLVAGEAADGGSDTIAPTGS 145 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ IG+PLT+ R + ELG G+I +L +VRP IAVI + AH+ F Sbjct: 146 FNSEIGLPLTVLRGTAATRKLVLELGADKPGDIGYLASIVRPQIAVILMVGTAHIEFFGS 205 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AKAE+ GL GT LN DD L ++ ALG + + +FG+ +AD + Sbjct: 206 QEAIADAKAEVLGGLVPGGTAVLNADDERVLGLAPRATALGHR-VVTFGRVPSADVRAED 264 Query: 263 WK-QCSEQSWMEVQLQGK-----------SMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + ++ ++++G+ + V +G H N L + Sbjct: 265 VTVDATGRASFTLRVRGRVAAAGEVADDLRLPVSLRLVGEHHVSNALAAATAAILAGTAP 324 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + LS P G +R A+ + T++D++YNANP SM+AA+ ++ ++ G Sbjct: 325 SVVAERLSAAEP----GSPHRMAVTERPDGITVVDDAYNANPESMRAALRSVAVMA--GR 378 Query: 369 GRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422 RR +AVLG+M E+GE +++ H + ++ NI + + G H A+++ Sbjct: 379 TRRSVAVLGEMRELGEGARAAHDAIGRLVVRLNIKLLVVVGDGAYHIHEGAMQEGSWGEE 438 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 V + +D + L GDVV+VK+SN G ++L Sbjct: 439 TV-FVPDLDAARAELAERLRPGDVVLVKASNGSGLWQL 475 >gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] Length = 436 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 132/440 (30%), Positives = 218/440 (49%), Gaps = 29/440 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG ++DG+ + A++ GA V+V+ V G + V Sbjct: 17 ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNPEVVIEGDDRYIL--VH 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL ++A R K IIAITG+ GKTTTKE++ L KT+ G+ NNHIGV Sbjct: 75 DSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNLNNHIGV 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M + + E+G +H GEI+ LT +V P +IT + AHL F +E + Sbjct: 135 PLTILSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNVGKAHLEGFGSLEGVIRT 194 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQ 265 K+E+++ L +K GT F+N+DDS L+K A GI + ++G S++ ++ Sbjct: 195 KSELYDYLKEKKNGTAFINFDDSI--LMK---QAEGISHLITYGTSESTSVCGKIDDSSL 249 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 W + L + IG + N+L + I ++ +AL + P+ Sbjct: 250 TLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDIKEALEQYTPQNN 309 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + NQ LI ++YNANP SM AA++ + ++ +LGDM E+G+ S Sbjct: 310 RSQFKKTESNQ----LIIDAYNANPTSMLAALNNFCNLKAE---HKMVILGDMRELGKDS 362 Query: 386 QSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442 H + + L+ + +I V L G D ++ H H+ + + + + + Sbjct: 363 LLEHQKIIDFLTKHKDIEKVLLVG-------DEFCKTNHPYTHFKDVNEVKNYLVSNPIT 415 Query: 443 DGDVVVVKSSNSCGFYRLIN 462 D +++K SN + L++ Sbjct: 416 D-HTILIKGSNGIRLFTLVD 434 >gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 432 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 211/441 (47%), Gaps = 30/441 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G V V+ Sbjct: 16 VTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEGDTRYIV--VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 NSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 134 PLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGIIKT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K TIF++ D+ + + + H + + +Y G + N+ + +W Sbjct: 194 KGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSEDGLYINGHVTGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K +E + EVQ + IG + N L + I + + KAL+ + P+ Sbjct: 254 KTDNESKYHEVQTR---------LIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + A N TLI ++YNANP SM A+IS + ++ +LGDM E+G+ Sbjct: 305 NNRSQLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAE---NKMLILGDMRELGK 357 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S H +A+ L V L G A R + Y + + L +Q Sbjct: 358 DSADEHQKIADYLEECGFKDVVLVGELFAAT-----RHSYQSYPD-VTALIAELQREKPC 411 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 G +++K SN ++ L Sbjct: 412 GKTILIKGSNGIKLSSVVEYL 432 >gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640] gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06] Length = 452 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 176/363 (48%), Gaps = 23/363 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + AS+ Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143 VDD L AL LA A R + ITGSVGKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A+ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNAMRAHIGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI++GL G + +D+ + K + L +T +A+ + K Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTRTFGIDSGDVHAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSN 315 Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM E Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366 Query: 381 MGE 383 +GE Sbjct: 367 LGE 369 >gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia sp. CcI3] gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia sp. CcI3] Length = 467 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 146/496 (29%), Positives = 222/496 (44%), Gaps = 67/496 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A G + G V + +DSR + F A+ G DGHDF Sbjct: 1 MIPL-TLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV S+G P V D AL LA R + AT++A+TGS GK Sbjct: 60 AVAA----GASAVLAARSVGE---PAVIVPDPPSALAALAAYVRDLAAATVVAVTGSAGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L + T A GS+NN IG+PLTL R D F + E+G G I L Sbjct: 113 TTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGPGHIATLC 172 Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP + V+ + AHL ++ G IA+AK E+ E + + LN DD + + Sbjct: 173 AVARPAVGVVLNVGSAHLGEYADGRLGIAAAKGELAEAASE--AVVLNADDPLVAAMAVR 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG---------I 288 + A + +FG+ AD + ++V G+ S +++ HG + Sbjct: 231 TTA----EVITFGEGGRADVR---------AGAVDVDRLGRASFDLLAHGEHHRVTLGLV 277 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346 G H N L + L D ALS P+ R+R + +++++Y Sbjct: 278 GAHQVPNALAAAAVAIRLGLSPDRVAAALSAARPR----SRWRMEVTSTAAGVVVVNDAY 333 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP SM+AA+ L + G+GR AVLG M E+G+ + + H +VL + V L Sbjct: 334 NANPESMRAALKALVDM--RGKGRAFAVLGPMGELGDAAAAEH----DVLGRF---AVRL 384 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GDVVVVKSS 452 ++A+ P + H+H +++G + + D DVV+VK+S Sbjct: 385 GVDRLIAVG---PAARHIHLGASLEGSWDGESVEVTDAEEAVALVAAQAGPDDVVLVKAS 441 Query: 453 NSCGFYRLINLLLEEF 468 S G R+ L+ F Sbjct: 442 RSFGLERVAEALVTRF 457 >gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] Length = 462 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 141/487 (28%), Positives = 216/487 (44%), Gaps = 70/487 (14%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + SIG+ +N IS +S I + F A+ G YDGHDFI AV GA V+VN Sbjct: 13 LNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMAGAQAVLVNRY 72 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + S+++P V D AL K+A R R + +IAITGS GKT+ K M L + Sbjct: 73 V-----SVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVKNMTVSILKNC 127 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + G+ NN IGVP+TL + DF + ELG + LGE+ L+ +V +A++ I Sbjct: 128 GTVVSTQGNQNNLIGVPITLLNLTYQSDFAVIELGSNQLGELNKLSKIVAADVALVNNIF 187 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 +HLS F ++ I K EIF GL G + +N D Sbjct: 188 ISHLSGFRSLKSIQQEKGEIFSGLACNGQVVINGDS------------------------ 223 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGI------------------ 288 NA F Q ++ W + ++ K M+ + HG+ Sbjct: 224 -NAVFMWNSMLQLKKRWWFSIYVK-KEMDFFANNICIYPHGVRFILSSPYGVAPVFLSIL 281 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + + A++ + L P GR Y LN G L+D++YN+ Sbjct: 282 GRHSVSNALAASALAFSVGANLSEIVYGLQNIQPLPGR--LYPILLNDGKLLLLDDTYNS 339 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWL 406 N SM AI+VLS + P G RI V+ DM E+GE ++ +H +A ++S I + Sbjct: 340 NVGSMIEAINVLS-VMP---GYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILT 395 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFL---FIQSSLVDGDVVVVKSSNSCGFYRLINL 463 G + H H + L Q++ + ++VK S S R++++ Sbjct: 396 IGNISYLISKNCKEGKHFHNKNKLIRYLLNNILFQNTYIS---ILVKGSRSFQMERIVDI 452 Query: 464 LLEEFPA 470 + ++F Sbjct: 453 IRDQFEC 459 >gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2, 6-diaminopimelate-alanyl-alanine ligase [Brachyspira pilosicoli 95/1000] gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2, 6-diaminopimelate-alanyl-alanine ligase [Brachyspira pilosicoli 95/1000] Length = 448 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 119/429 (27%), Positives = 219/429 (51%), Gaps = 43/429 (10%) Query: 30 ISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 IS DSR + F AIKG ++G+DF L KG +++ ++ ++ + V+ Sbjct: 33 ISTDSREDFNENKLFLAIKGDKFNGNDFALDTYNKGCRFFILSENI--NMPKDANVVYTN 90 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D VL + KLA R R +++ITGS GKTTTKE+ + L + KT G++NN IG Sbjct: 91 DSVLFFI-KLAREYRRRFNIKVVSITGSCGKTTTKELTALFLGTKYKTLKTEGNFNNEIG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP T+ + + + E GM+H E+ ++ + +I + P H++ +E IA Sbjct: 150 VPKTIFNLDDSYEMAVIEAGMNHKNELLRISEAIEADTVIINNVEPVHIAFLGSLENIAL 209 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK+E+F ++ I N + + ++L +++ IK I AD +++ K+ ++ Sbjct: 210 AKSELFNNAKENAII--NKNTNKVDILLSEAKNKKIKNIIE------AD--IKEIKKIND 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG- 327 S++ K++ H+ IG QN+LM L + D++ KAL+ + ++ R Sbjct: 260 NSFV-----YKNVTFNHNLIGDFNLQNILMALKAAELYNIDLEECAKALTNYQNQKNRMQ 314 Query: 328 --KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 K C+ +I++ YN+NP ++K ++L +S E R+IA++GDM E + Sbjct: 315 IIKINNCS-------IINDCYNSNPTALK---NMLIYLSKREEKRKIAIIGDMLETETQN 364 Query: 386 QSFHIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 SFH ++ + SL NI+ V G + + + + S +H+ + + + ++++D Sbjct: 365 SSFHKEIGIFINSLKNINEVITVGDNSQKIDNEVTCS-KMHFKKVEESI-----NTIID- 417 Query: 445 DVVVVKSSN 453 ++K+SN Sbjct: 418 ---IIKNSN 423 >gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] Length = 440 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 126/446 (28%), Positives = 204/446 (45%), Gaps = 32/446 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+ KG +V+ A I + V+ Sbjct: 16 VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYADPTDKRIIL--VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ K + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + D + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PRTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L+ +FLN ++ + A+ I ++G+ AD Q K S Sbjct: 194 KGELYDYLKAHDALLFLNESNADLTEMAAQRE---FDRIITYGQDDTADVQ---GKVISC 247 Query: 269 QSWMEVQLQGKSM----------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +++ + Q S+ EV H IG + NML + I AL Sbjct: 248 APFLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHFGVTPQQINHALE 307 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + A N+ LI ++YNANP+SM AAI + ++A+LGDM Sbjct: 308 SYIPHNNRSQLTETAHNK----LIVDAYNANPSSMAAAIENFRLMEVE---HKMAILGDM 360 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G S H + E+L +++VWL G ++ L + + +D + I Sbjct: 361 RELGAASAEEHQKVVELLKAAGLTNVWLVG------EEFLKTNTDFRKFKNVDEVKAEIA 414 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + +++K SN + L +LL Sbjct: 415 HHQPENHYILIKGSNGIRLFELPDLL 440 >gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M01-240013] Length = 479 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 51 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 107 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA R + ITGSVGKTT KEML L A G+ Sbjct: 108 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 165 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 166 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 225 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 226 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 285 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 286 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 341 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 342 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 392 Query: 380 EMGE 383 E+GE Sbjct: 393 ELGE 396 >gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] Length = 479 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 51 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 107 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA R + ITGSVGKTT KEML L A G+ Sbjct: 108 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 165 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 166 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 225 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 226 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 285 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 286 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 341 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 342 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 392 Query: 380 EMGE 383 E+GE Sbjct: 393 ELGE 396 >gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M01-240149] Length = 436 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 8 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 64 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA R + ITGSVGKTT KEML L A G+ Sbjct: 65 --VDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 182 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 183 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 298 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349 Query: 380 EMGE 383 E+GE Sbjct: 350 ELGE 353 >gi|187479354|ref|YP_787379.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella avium 197N] gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bordetella avium 197N] Length = 939 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 17/366 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S D+RS+A E F AI G ++DGH ++ A + + S+P Sbjct: 500 VAGVSTDTRSVAADEIFVAISGENFDGHRYLAQAQAA----GACAAVVAHRVSDSSLPQL 555 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSY 143 + + AL +LA A R R +IA+TGS GKTTTKEM++ L++ + A G++ Sbjct: 556 VLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNF 615 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLTL R+ + ELGM+H GEI +L + + +A++ H G+ Sbjct: 616 NNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGV 675 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A + L + G DD + + + G + + FG D +K Sbjct: 676 EAVARENGAVLSALPEDGVAVYPGDDVYTPIWDELA---GARRVLRFGLQPGLDVYAQKI 732 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + +V ++V G H +N L + A + +A++AL F Sbjct: 733 RPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAV 792 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR +R + LID++YNANP S++ AI VL+Q+ G R+ VLGDM E+G+ Sbjct: 793 KGRMQRKETSNGT---ILIDDTYNANPDSVRVAIEVLAQLP----GPRVLVLGDMGEVGD 845 Query: 384 LSQSFH 389 + H Sbjct: 846 EGPAMH 851 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 25/241 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS---IGSLSIPVF 86 + +DSR ++P + F A +G DG +I A+ GA +V+ ++D + S +PV Sbjct: 30 LRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDALTQSVVADSRVLPVA 89 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141 G+ +LG L + + T++A+TG+ GKT+ + L AL+ + K IG Sbjct: 90 GLRGMLGELAD-GWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGTLGGL 148 Query: 142 -----SYNNHIGVP--LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVITT 191 S ++ P +TL R+ + D G + + S +G + VR A T Sbjct: 149 LPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAGYTN 208 Query: 192 IAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + HL +E+ +AKA +F GL+ +N DD+ L AK +G+ + Y+ Sbjct: 209 LTRDHLDYHGTMEQYEAAKALLFNWPGLQAA---VINADDAAGRRLLAK-LPVGLASAYA 264 Query: 250 F 250 Sbjct: 265 I 265 >gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] Length = 458 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 206/449 (45%), Gaps = 34/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ DSR AP F I G DGH FI + ++ GA + ++ + P Sbjct: 28 VTAITSDSRQAAPGCLFVPIVGERVDGHSFIPNVMEAGALATLSQKELPEA----RFPYI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V L A+ +A + K ++ ITGSVGKT+TKE++ L G++NN Sbjct: 84 QVASSLQAVKDIAKFYLEQLKIPVVGITGSVGKTSTKEVIASVLKEKYHILKTQGNFNNE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLT+ R+ + + E+G+S GE+ L + RP VIT I HL + + Sbjct: 144 LGLPLTVFRLRDYHEIAVLEMGISDFGEMSRLADIARPDTCVITNIGQCHLEFLGDRDGV 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD-FQLR 261 AK E+F L++ G LN DD ++ G + I+ FG + AD Q R Sbjct: 204 LKAKTEVFRYLKEGGRAILNGDDDKLATIR---QVQGKEPIF-FGMNPAFPVYADQIQSR 259 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML--MTLGIVSILTADVDTAIKALSV 319 K S + L V G HM N L +G+V LT + + + Sbjct: 260 GLKGMS----CRIHLPEAEFAVEIPMPGQHMVYNALAAAAVGMVHGLTP--EQIRRGIES 313 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR + + F ++D+ YNANP SMKA++ VL GR++A+LGDM Sbjct: 314 LEPISGRFR----MIETDHFLIVDDCYNANPVSMKASLDVLKD----ALGRKVAILGDMG 365 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVHYSETMDGLFL 435 E+GE + H ++ + + + +G + A K A P ++ V Y L Sbjct: 366 ELGEQEKELHAEVGDHAGRCGLDLLICTGSLSRYMSEAAKAANP-NLEVIYEVDSKKLER 424 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + S L DGD ++VK+S+ + RL+ L Sbjct: 425 NLFSYLRDGDTILVKASHFMHYERLVQRL 453 >gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] Length = 474 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 186/386 (48%), Gaps = 43/386 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----I 83 G IDSR + F A G + DG+DF AVQ GAG VV+ + A + SL+ Sbjct: 27 RGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLAQDKGC 86 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + DD L +LA RL ++ ITGS+GKTTTK++L L+ + +A G++ Sbjct: 87 AILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTTKDVLAAVLAKRYRVWATKGNF 146 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ P D + + E+GM+H EI L+ P++A+++ I +H+ Sbjct: 147 NNLIGMPLTVLSAPADTEVLVLEMGMNHFHEIERLSQSANPNLAIVSKIGTSHIGILGSR 206 Query: 204 EEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADF 258 E IA AKAEI +G+ G + L +D F ++ + GI + + G S + + Sbjct: 207 ENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDTFAQPAGIDVMLA-GVSDDDEV 265 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------- 308 + R + V +G+ + + G G + ML G+ S+ A Sbjct: 266 RARDVR---------VDDEGRPVFTLDFGQGETI-DTMLAIPGVQSVPNAVKAAAVAYRL 315 Query: 309 -----DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +D A + L++ G R + +ID+SYNA+ SM A + +L + Sbjct: 316 GVTPEQIDAAFRGLTI------TGHRQEIKRAKSGARVIDDSYNASAESMAAGLDLLCSL 369 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFH 389 S G R+A+LG+M EMG+ + H Sbjct: 370 SCTGS--RMAILGEMGEMGDEAPRMH 393 >gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 432 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 133/448 (29%), Positives = 213/448 (47%), Gaps = 42/448 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR+ F A+KG +++G+ F A++ G+ +V D A + + V Sbjct: 15 GVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIV--DEAAYVPAGDTHYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L +LA R R II ITG+ GKTTTKE+++ LS G+ NN IG Sbjct: 73 DNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + D GI E+G SH G+I+ L + P +IT + HL F E + Sbjct: 133 VPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVIR 192 Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256 K E+++ L + G TIF++ D+ + L A G+ I S+G+ + N+ Sbjct: 193 TKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGNS 246 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + +WK E S EV + IG + N L + I + + +A Sbjct: 247 PYLIFEWKSGKEGSLHEVHTR---------LIGEYNLSNALAAVTIGCFFGVEPEKIDQA 297 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ + P+ R + + A N TLI ++YNANP SM A+IS + G+++ +LG Sbjct: 298 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILG 350 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ S H + + L + V L G A + P Y + L Sbjct: 351 DMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT-----YPDA-PALIAE 404 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + G +++K SN +++ L Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432 >gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] Length = 437 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 183/387 (47%), Gaps = 23/387 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+QKG VV+ A + VD Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ LS + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ G +FLN ++ + A+ I ++G+ + AD Q C+ Sbjct: 194 KGELYDFLKAHDGLLFLNESNADLMEMAAQRE---FSRIITYGQDETADVQ-GNVVSCAP 249 Query: 268 --EQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + +W + Q S EV H IG + NML + I AL + P Sbjct: 250 FLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIPH 309 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEM 381 R + A N+ LI ++YNANP+SM AAI L Q+ ++A+LGDM E+ Sbjct: 310 NNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD-----KMAILGDMREL 360 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 G S H + ++L I +VWL G Sbjct: 361 GAASGEEHQKVVDLLKNTGIDNVWLVG 387 >gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] Length = 457 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/404 (31%), Positives = 200/404 (49%), Gaps = 28/404 (6%) Query: 8 HDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++L I+ S G + F+N ISIDSR++ + F AIKG ++DGH F+ + KG Sbjct: 9 NNVLGDIKNLSEG--KKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGV 66 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV+ M + S + P + V+D A KLA+ R + I+AITGSVGKTTTKEM Sbjct: 67 KSVVIKKGMQKLLPS-NFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEM 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L+ + + ++NN IGV LT+ ++ + E+GM LG+I L+ P Sbjct: 126 IGGVLNKLGRIKLSHANFNNEIGVGLTILAADIEDKVLVLEMGMRGLGQIENLSKYSEPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSH 240 IAVIT I AH+ E I AK EI + L G + + +D F E K + Sbjct: 186 IAVITNIGTAHIGLLGSKENITHAKCEISKFLNPEGVVIIPANDPFLEKTLKEFWKGRVI 245 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + I + +S D LR + S ++ + ++ + E+ G+H A N L Sbjct: 246 KVRLLNIANQKESIKKDDNLRGFYNPSNKT---ILIEENTFEISFE--GFHNASNFLFAY 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D ++ K F +GR K + T+ DESYNA+P S+KA I L Sbjct: 301 AVAKELGIDFASSNKF--DFVSLDGRNKILKSVKT----TIYDESYNASPESVKACIKNL 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + P + + G M E+G+ S+ +H E+ +L N S + Sbjct: 355 LE-KPRN---KFFIFGSMQELGKESEKYH---KEIFNLINNSDI 391 >gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] Length = 461 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 133/472 (28%), Positives = 218/472 (46%), Gaps = 50/472 (10%) Query: 5 WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKG------------ 48 ++ ++ + + G I I + FV+ + DSR I F I Sbjct: 3 YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62 Query: 49 ---PHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVA 101 DGH FI A++ GA VAS I S+P+ V D AL LA Sbjct: 63 YTIAEKDGHKFINSALKNGA---------VASFADHIVQTSLPLILVSDTQLALWALAKN 113 Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 + IA+TGS GKTTTK+++ LS K + + S NN IGVP T+ MP D + Sbjct: 114 YLNKINPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTE 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+GM HLG++ L+ ++ P+I++IT I AH+ F ++IA AK EI +GL+K G Sbjct: 174 IAVIEMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDG 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280 T + D+ LLK ++ + + +FG+ ++ +F W Q ++ + ++ ++ Sbjct: 234 TFIYDGDEI---LLKERADLFSGEKV-TFGEKESNNF----WVSQIEDKKRLSFKVNQET 285 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V + +G A N + + T + + R + + + T Sbjct: 286 YSV--NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGE---T 340 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +I + YN+NP + AI +L G ++I VLGDM E+G+ S H+ L + Sbjct: 341 IISDVYNSNPTAAIKAIEILKDFPTRG--KKILVLGDMLELGDQEVSLHLALKAPIERAA 398 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 V+L G + +L A+ + + L +QSSL DVV++K+S Sbjct: 399 FDEVYLVGPIMKSL--AVKMQARWYDKAFLTDLSRDLQSSLSKNDVVLLKAS 448 >gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Deferribacter desulfuricans SSM1] gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Deferribacter desulfuricans SSM1] Length = 453 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 170/335 (50%), Gaps = 11/335 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N + I+S+ + + F A+KG + DG+ F A ++GA L V + + S++ + Sbjct: 25 NNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAILTVFDNPYFYNKASINKVL-- 82 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D A+ + + A +AITGSVGKTTTK++L S ++Y +YNN + Sbjct: 83 VEDSFNAIKSFGIWKLKNNFAKRVAITGSVGKTTTKKLLYEIFSKQYQSYMSYKNYNNEL 142 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ ++ A +P +VD+ FE+G + GEI+ T +RP +AVIT IA +H+ F + EIA Sbjct: 143 GIAISCANIPDEVDYAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLNEIA 202 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + K I E + ++LN +D+ + K + K I++ G S+ ADF++ K Sbjct: 203 AEKFSIAE-TDSVKELWLNENDTVY----LKDEIVKNKKIFTVGFSEKADFRIIDIKSLD 257 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V+ + + YH N M G+ + D +A+ F P+E RG Sbjct: 258 GGYEFYVKFNRDKFKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLPEEKRG 317 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 Y N +ID++YNA+ S+ AA+ L + Sbjct: 318 VVY----NYENIAIIDDTYNASIDSITAALKSLDK 348 >gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC 13032] gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC 13032] Length = 514 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 208/478 (43%), Gaps = 46/478 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSRS+ P F A+ G DGHDF A++KGA V+ ++ + ++ +P + Sbjct: 31 VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88 Query: 90 D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126 + V+ AL++LA VA + ++AITGS GKT+TK+ + Sbjct: 89 ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L T A GS+NN +G+P T R D + + E+ +G I+ LT + P I Sbjct: 146 ATVLDQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRI 205 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243 A + + AHL F E IA AK EI E L +KTG + LN DD F + ++ A Sbjct: 206 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 265 Query: 244 IKTIYSFGKSKNADFQLRKWK-----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G++K +D+ W ++ + + S V G H N L Sbjct: 266 VWFTTDAGQAKKSDY----WATSISLDAVARASFTLNTKDGSWPVTLQVFGEHQVANALA 321 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L R T+I++SYNANP SM+A I+ Sbjct: 322 AAAIAMEAGVAPELVVAGLEAH--SAASAHRMDVKTRADGVTIINDSYNANPDSMRAGIA 379 Query: 359 VLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLAL 414 L+ S E AVLG M E+G+ + H +L L+ YN+ + G + Sbjct: 380 ALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYNVQELVAVGENPNCAALA 439 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 + A + H +D + + DVV+VK+SN+ +R+ L P ++ Sbjct: 440 ESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNADRLWRVAEALHGMVPGLK 497 >gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira hyodysenteriae WA1] gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira hyodysenteriae WA1] Length = 450 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/439 (28%), Positives = 207/439 (47%), Gaps = 34/439 (7%) Query: 30 ISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---- 84 IS DSR + + F AIKG +DG+ F L KG ++ S S+ +P Sbjct: 35 ISTDSRDNFDENKLFLAIKGEKFDGNKFALETYNKGCRYFIL------SDASIKLPDDAV 88 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VF DD + KLA R R +I+ITGS GKTTTKE+ + LS+ K G+ N Sbjct: 89 VFYADDTILFFIKLAREYRRRFNIPVISITGSCGKTTTKELTHLFLSTKYKALKTEGNLN 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP T+ + + + E GM+H E+ ++ + + +I + P H++ IE Sbjct: 149 NEIGVPKTIFNLDDSYEIAVIEAGMNHENELLRISEAIEANTVIINNVEPVHIAYLGSIE 208 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+E+F + +N + + ++L+ ++ IK I AD K Sbjct: 209 NIAYAKSELFNHTRENANAVINKNTNCIDILEKEASRNNIKNIIE------ADI-----K 257 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ + G + + H+ IG N+L L + D+ L + ++ Sbjct: 258 EIIKKDDNTFEYNGITFK--HNLIGDFNLHNVLSALKAAELYDVDLQKCADILITYESQK 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +N +I++ YN+NPA++K I LSQ S E ++IAV+GDM E Sbjct: 316 NRMQ----IINIKGCNVINDCYNSNPAALKNMIKFLSQRS---ESKKIAVIGDMLETETE 368 Query: 385 SQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + S+H D+ ++++ L NI V G H + D + + +Y E ++ L Sbjct: 369 NSSYHKDIGKIINELKNIDTVIAVGKHSKDIYDTV--NCEKYYFENAQSSVEKVKEFLKY 426 Query: 444 GDVVVVKSSNSCGFYRLIN 462 +++K+S GF +I+ Sbjct: 427 DTAMLIKASLGMGFAVIID 445 >gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 433 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/388 (31%), Positives = 188/388 (48%), Gaps = 29/388 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+Q+G VV+ + VD Sbjct: 16 VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDEAEFCPPNDERYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A LA R I+ ITG+ GKTTTKE+L L +G++NN IGV Sbjct: 74 DVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L LV P +A+IT + AHL F E + Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193 Query: 210 KAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADFQLRKWK 264 K E+++ + K G +F++ ++ H +GI + ++G D K Sbjct: 194 KGELYDFMRQSKRGKVFIDANN---------PHLMGIAEGLDLVTYGTPARPDL-FVSGK 243 Query: 265 QCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S ++ Q G EV H +G + NML L + L + A +AL+ + Sbjct: 244 VVSAAPFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAEDANRALANYV 303 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCE 380 P R + A N+ LI ++YNANP SM A++ + PH ++A+LGDM E Sbjct: 304 PSNNRSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVPH----KMAILGDMLE 355 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G +SQS H + + LS + VWL G Sbjct: 356 LGAVSQSAHQAIVDQLSQLALDEVWLVG 383 >gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] Length = 455 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 130/438 (29%), Positives = 192/438 (43%), Gaps = 21/438 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R + P F A+ G +D HDFI A + GA +V +P V Sbjct: 30 ITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVERRQ-----DDPLPQLEVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL L A RL ++A+TG+ GKTT K+ML LS T A G+ NN G Sbjct: 85 DTRLALGLLGRARRLAWGGPLVAVTGNSGKTTVKQMLATILSRSGATLATRGNLNNDFGA 144 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL + + + ELG +HLGEI + L P +AVIT + AH+ F G+ IA A Sbjct: 145 PMTLLELDGEHRRAVVELGANHLGEIAWTASLAMPDVAVITNVTGAHVGEFGGMGRIAQA 204 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE- 268 K EI GL + G LN DD +F +++ G + + FG + C E Sbjct: 205 KGEILGGLSRDGVAVLNRDDRYFRFWASQA---GSREVLDFGLEDEGRLRAETL-VCDEF 260 Query: 269 -QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + G+ + V + G H N L L AD + L P GR Sbjct: 261 GRYAFTLSFDGRELGRVQLALMGRHNVANALAAAAAALALRADPADVLAGLEEVEPVAGR 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + L+D++YNANP ++KAA+ L+ + R +LG M E+GE S Sbjct: 321 LGVF---AGRNGARLLDDTYNANPGAVKAALETLATLPAP----RWCLLGAMGELGEASA 373 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 +H ++ I + G A + H+ + + L + L G Sbjct: 374 HWHAEVGHHARTLGIDFLGTLGEAARPASRAFGEGGY-HFDD-REALTRHVLHHLPPGAS 431 Query: 447 VVVKSSNSCGFYRLINLL 464 V+VK S S G ++ L Sbjct: 432 VLVKGSRSAGMEHVVTAL 449 >gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 420 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 16/386 (4%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD L AL +L+ R + A II ITGS GKTTTK+++ L + + + G+ NNHI Sbjct: 42 VDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNHI 101 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLTL ++ D + + E+GMS GEI L+ L +P +A+IT I AHL EEIA Sbjct: 102 GLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIA 161 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQC 266 AK EI GL+ G N D+ + + + SFG KS N + + Sbjct: 162 RAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIGN 221 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S+ +LQ E +G H N L + L + + L Sbjct: 222 DGSSF---RLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLS--- 275 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R + FT+++++YNA+PA+ KA +S++ Q+ G + VL DM E+GEL + Sbjct: 276 GMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLK--GYRHKYVVLADMLELGELEE 333 Query: 387 SFH-------IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 FH +LAE L I G ++ A ++ ++ E + ++ Sbjct: 334 QFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKE 393 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 + DVV+VK+S ++N LL Sbjct: 394 VIHPEDVVLVKASRGMKLEDVVNFLL 419 >gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] Length = 471 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 138/468 (29%), Positives = 217/468 (46%), Gaps = 37/468 (7%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 Q H I + IDSR++ P F A +G DGHD+ AV Sbjct: 16 QSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAEQAVAA-------GAAA 68 Query: 75 VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 V + L +P VDDV AL +LA V RL +K ++A+TGS GKT+TK+++ L Sbjct: 69 VLATRPLGVPAIVVDDVQSALGRLARFVVERLGTK--VVALTGSAGKTSTKDLIAQVLQR 126 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 T GS NN IG+PLT R + + + E+G +G IR+LT L P I ++ + Sbjct: 127 KGPTVWTPGSLNNEIGLPLTALRATEETEHLVLEMGARGIGHIRYLTELTPPRIGLVLNV 186 Query: 193 APAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 AH+ F G E+IA AK E+ E L E G LN DD + +++ A + Sbjct: 187 GTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRAMASRTKA----RVL 242 Query: 249 SFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 FG++ +A + + Q + +V G H N L + + Sbjct: 243 LFGEADDAAVRAENVRLTELGQPTFTLHTPTGCSDVTMRLYGEHHVSNALAA----AAVA 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISP 365 ++D + +++ + R+R + + T+++++YNANP SM+AA+ L+ + Sbjct: 299 HELDMSASEIALALSEADTLSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM-- 356 Query: 366 HGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDAL 418 G+GRR AVLG M E+G+ + H + + N+ + G + A + Sbjct: 357 -GKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGS 415 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH S+ + L ++ L GDVV+VK+S S G R+ LLE Sbjct: 416 WGEESVHVSDAQAAVDL-LRRELRPGDVVLVKASRSVGLERIAQALLE 462 >gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] Length = 478 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 202/455 (44%), Gaps = 23/455 (5%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + ++ DSR++ P + F A+ G +D HDF+ V +GA V+V+ A++ + Sbjct: 25 PDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRAPAATLDVTN 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D L +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 85 VAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDARLAT 144 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 145 AGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMINNAQREHQEF 204 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255 +E +A A + L G D + + + KA A G + + FG Sbjct: 205 MVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYAPVWKA---AAGSRRVLDFGMDAG 261 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A ++ +EVQ G+ + +G H A+N L + + Sbjct: 262 A--VTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATACALAAGVAPEVIAQ 319 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 AL F P +GR +R + + G +ID++YNANP SM+AAI L + R VL Sbjct: 320 ALGNFAPVKGRLQR-KQGTHGGL--VIDDTYNANPDSMRAAIDALVTLP----APRWLVL 372 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLF 434 GDM E+G +FH ++ I V +G DA P + H +E L Sbjct: 373 GDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAFGPGAQHFASAED---LI 429 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 ++ V+VK S R++ L+ + P Sbjct: 430 EHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDP 464 >gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans C54] Length = 954 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 183/370 (49%), Gaps = 23/370 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+S D+R I E F A+ G ++D H+++ A ++GA VV + S S+P Sbjct: 514 LVKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACAAVVAHAVPES----SLPQ 569 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGS 142 + D AL ++ A R R K ++A+TGS GKTTTKEM++ L+ + A G+ Sbjct: 570 LVLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGN 629 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN IGVPLT+ R+ + +FELGM+H GEI L + P +A++T H Sbjct: 630 LNNDIGVPLTVLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVALVTNAQREHQEFMHT 689 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQ 259 +E +A L G D+ + ++ L A AL FG D Sbjct: 690 VEAVALENGAAIAALPADGVAVYPGDEPYAAIWDRLAAPRRAL------RFGLQPGLDVY 743 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + + V S ++ G H +N L + A +D A++AL+ Sbjct: 744 AEQILADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAG 803 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F P GR +Y+ L+ G LID++YNANP S++AAI VL++I+ G R+ VLGDM Sbjct: 804 FSPVAGR-MQYK-KLSDGTL-LIDDTYNANPDSVRAAIDVLARIA----GTRVLVLGDMG 856 Query: 380 EMGELSQSFH 389 E+G+ + H Sbjct: 857 EVGDNGPAMH 866 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 158/385 (41%), Gaps = 49/385 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------- 82 + +DSR I P + F A G DG +I A+ GA V+ A+I + + Sbjct: 31 LKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTPM 90 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141 +PV G+ +LG L R S ++A+TG+ GKT++ + + AL K IG Sbjct: 91 LPVTGLRALLGELGDTWY-GRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGT 149 Query: 142 ---------SYNNHIGVP--LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + H+ P LT+ R+ + D G + M S +G + VR +A Sbjct: 150 LGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 209 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL +E +AKA +F GL +N DD L A A Sbjct: 210 AYTNLTRDHLDYHGTMERYEAAKASLFRWPGLSAA---VVNADDEAGRRLIASLPA---- 262 Query: 246 TIYSFGKSKNAD------FQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G S +AD + R + ++ Q + V G++ ++V +G H N+L+ Sbjct: 263 DLSVMGYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEA-QIVTRLLGAHNVSNLLL 321 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANPA 351 G++ L + L+ P +GR + +G ++D Y+ P Sbjct: 322 VAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVD--YSHTPD 379 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 S+ A+ L ++ GR + V G Sbjct: 380 SLARALMALRPVAQARAGRLVCVFG 404 >gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] Length = 452 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 16/369 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL-----ACDLPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + ++A+TGS GKT+ KEM LS T G+ NN Sbjct: 79 IVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + + + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQ 265 A AK EI+ GL + G LN D++ + +A +G + ++ F + N+DF + Sbjct: 199 AKAKGEIYTGLPENGIAILNADNNDWLNWQA---VIGDRKVWRFSPNAANSDFTATNVQI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + + +++V+ G H N L + + AD+ L+ G Sbjct: 256 TSHGTEFTLHTPTGNVDVLLPLPGRHNIANALAATSLAMAVGADLAAVKAGLAQLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R R +Q L+D+SYNAN SM AA+ VLS++ G R V+GDM E+G S Sbjct: 316 RLFPIRLTESQ---LLLDDSYNANVGSMTAAVQVLSEMP----GFRAMVVGDMAELGAES 368 Query: 386 QSFHIDLAE 394 + H ++ E Sbjct: 369 AACHREVGE 377 >gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola] Length = 453 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 203/417 (48%), Gaps = 52/417 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ I I+++ I P F A+ G ++D H FI A++KG ++ + + + I + Sbjct: 23 LIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAIITHKHIKSHISYII--- 79 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + AL ++A R ++ A I+AITGS GKTT KEM L T + IG+ NN Sbjct: 80 --VQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEMTASILRKYGNTISTIGNLNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IGVP+TL ++ + + ELG + GEI +++++ +P I +I I +HL F + Sbjct: 138 NIGVPITLLQLNKYHKYAVIELGANQPGEISYISNMTQPEIILINNIQYSHLQGFKSLLG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWK 264 ++ AK+EIF GL+ G + +N D F K K + IY S K +N++F Sbjct: 198 VSQAKSEIFSGLKPNGKVIINLDSHHFS--KWKKNIKNNHVIYFSIKKKQNSNFFSSNIT 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML----------MTLGIVSILTADVDTAI 314 S + + ++ + +GY N L + L I+ I AD Sbjct: 256 IDSYGTTFVMHTPNGTINISLPFLGYQNISNALAASALAFALKIPLNIIQIGLADTPIIS 315 Query: 315 KALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L + +P + LID++YN+N ASM AI VL ++ G +I Sbjct: 316 RRLQSIILNPDK---------------ILIDDTYNSNVASMITAIKVLEKM----PGYKI 356 Query: 373 AVLGDMCEMGELSQSFH---------IDLAEVLSLYNISH----VWLSGFHVLALKD 416 V+GDM E+GE S +H D+ ++ S+ NIS+ ++ +G H L KD Sbjct: 357 LVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNEITDIFHNGKHFLHKKD 413 >gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bradyrhizobium japonicum USDA 110] gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110] Length = 459 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 215/466 (46%), Gaps = 43/466 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH----------- 50 P+WT ++ +A+ + G P ++ ++ DSR + P F A+ G Sbjct: 3 GPIWTVAEVARALG--AAGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGGFISAFASA 60 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKAT 109 DG +F A GA ++V + I + +P V D L L LA AAR R Sbjct: 61 RDGWEFADKAEAAGAAAMIVPHE----IAGIRVPQIVVKDTLIDGLWGLARAARARFNGP 116 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +I +TGS GKT+TKE L ++ YA S+NN GVPLTL D + E+GM Sbjct: 117 VIGLTGSAGKTSTKEFL----AAYPNAYASPSSFNNFWGVPLTLCNARPDASLWVVEMGM 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + GEI L+ L RP +A++ + P HL +E I K I GL + G + L Sbjct: 173 NQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDGVLVLPAG- 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 LKA + FG ++A+ E SW V + GK G Sbjct: 232 -----LKASEWK---GKVVRFG--EHAEVHEVTHAPHGE-SWQVVAMIGKKQIAFSLTPG 280 Query: 290 Y-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 H QN L L SI A++D A A+ + G+ A+ G T+ID+S+N Sbjct: 281 APHRVQNALAAL--ASIRAANLDAATLAIKLDRVGIMTGRGVEQAV--GGVTVIDDSFNG 336 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NPAS+ AA+ L + G GRRIAVLGDM E+G+ + S+H L + L I V+ G Sbjct: 337 NPASVAAALHSLQARNVTG-GRRIAVLGDMLELGDDAPSYHTGLTK--HLDGIDGVYCVG 393 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSN 453 + L + LP + + + L +SL+ GDVVVVK S Sbjct: 394 PLMRHLFEVLPSGKALGWHDDPATLKPGEVASLLKAGDVVVVKGSK 439 >gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 607 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 32/401 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KGA LV+ NTD+ V Sbjct: 199 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIKDK------RV 248 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA R + ++ ITGS GKTTTK+++ LS KT G+YNN Sbjct: 249 IKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 308 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 368 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E ++K T F+ DD + L + K K+ DF + K Sbjct: 369 VFKAKTELLEFVDKENT-FVCGDDEYLGKLDVNKIGFNGNNTH---KIKSYDFSNKGSKF 424 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + E+ L GK + + I +A+ + +T ++ +K + + + Sbjct: 425 ILDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIQKGLKEIKISNM--- 473 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 474 ---RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGENE 527 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 +H+D+ L I ++L G + D ++ Y Sbjct: 528 VDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568 >gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG] gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF] gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] Length = 473 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 213/465 (45%), Gaps = 57/465 (12%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + DSR++ F A G DGHD+ AV V + L Sbjct: 23 PELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVAA-------GAVAVLATRPL 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P VDDV AL LA R +IA+TGS GKT+TK+++ LS T G Sbjct: 76 GVPAIVVDDVTAALGALARTVVERLGTAVIAMTGSAGKTSTKDLIAQLLSRRGPTVWPPG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PLT R+ + + E+G +G IR+LT L P I ++ + AH+ F Sbjct: 136 NLNNEIGLPLTALRVTEETRHLVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFG 195 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---- 257 G E+IA AK E+ E L ++G LN DD + ++ A + FG++ +A+ Sbjct: 196 GKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPRTRA----RVLLFGEADDAEVRAE 251 Query: 258 -----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 F LR C E + ++L G+ HH A + LG+ + Sbjct: 252 NVTLTDTGRPRFLLRTPTGCGE---VTLRLYGE-----HHVSNALAAAAVAHELGMPAEE 303 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364 A + ++LS R+R + + T+++++YNA+P S++AA+ L + Sbjct: 304 IALGLSEARSLS----------RWRMEVTERPDGVTIVNDAYNASPDSVRAALRALVAMG 353 Query: 365 PHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALK 415 GR AVLG M E+G+ S + H + + N+S + G + A Sbjct: 354 SAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWLRMGAYN 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + VH S+T + L ++ L GDVV+VK+S + G ++ Sbjct: 414 EGSWGEESVHVSDTQAAIDL-LRGELRPGDVVLVKASRAAGLEKV 457 >gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 613 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 32/383 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KGA LV+ NTD+ + Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDVKDE------RI 252 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA+ R + ++ ITGS GKTTTK+++ LS KT G+YNN Sbjct: 253 IKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 312 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 372 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E + K T F+ DD + L K + +G ++ K ++ F + K Sbjct: 373 VFKAKTELLEFVNKENT-FVCGDDKY--LAKLDVNKIGFNNSNTY-KIESYKFSDKGSKF 428 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + E+ L GK + + I +A+ + +T +++ +K + + + Sbjct: 429 VLDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIENGLKEIKISNM--- 477 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R++ + G I+++YNA+P SMKAAI L++I + + ++A+LGDM E+G+ Sbjct: 478 ---RFQ-EIKIGEDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNE 531 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 +HID+ L I ++L G Sbjct: 532 IDYHIDVLNYLLDKKIKLIYLYG 554 >gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] gi|27887168|gb|EAA24272.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] Length = 611 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/404 (28%), Positives = 199/404 (49%), Gaps = 38/404 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KG LV+ NTD+ V Sbjct: 203 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGTSLVIADNTDIKDK------RV 252 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA R + ++ ITGS GKTTTK+++ LS KT G+YNN Sbjct: 253 IKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNN 312 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDN 372 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E ++K T F+ DD + LG + G ++N +++ ++ Sbjct: 373 VFKAKTELLEFVDKENT-FVCGDDEY----------LGKLDVNKVGFNENNTYKIESYEF 421 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHP 322 ++ S + L GK E+ +G H N + + + + + ++ +K + + + Sbjct: 422 SNKGS--KFILDGKEYEM--SLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNM 477 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+G Sbjct: 478 ------RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELG 528 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 E +H+D+ L I ++L G + D ++ Y Sbjct: 529 ENEVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 572 >gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] Length = 450 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 121/361 (33%), Positives = 182/361 (50%), Gaps = 20/361 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I+ DSR+ + FFA+ G ++D HDF+ + KGA VV D + G L Sbjct: 24 INQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSRGDCASFSGCLK---- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143 VDD L AL LA A R + + ITGS GKTT KEML L + A G++ Sbjct: 80 -VDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLASILRTAHGADAVLATAGNF 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSG 202 NNHIG+PLTL + + E+GM+H GE+ LT + P++A++ AH+ F+G Sbjct: 139 NNHIGLPLTLLNLREPHRHAVIEMGMNHAGELATLTRIAAPNVALVNNAMRAHIGCGFNG 198 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++IA AKAEI++GL + G L +D + +A A KT+ +FG + D Sbjct: 199 VDDIARAKAEIYQGLPENGIAILPAEDDHLAIFQATVSAF--KTL-TFGATV-GDVHAEN 254 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S ++ G V G H N + + L+ F Sbjct: 255 IALEALSSTFDLVYNGNRQAVQLPVAGKHNISNACAAAALAIAGGLRQPEIARGLAAFSN 314 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR +R + + Q ++D++YNANP SMKAA+ VL+++ R+ V+GDM E+G Sbjct: 315 IKGRLQR-KNGIRQTL--ILDDTYNANPDSMKAALDVLAKLP----APRVFVMGDMGELG 367 Query: 383 E 383 E Sbjct: 368 E 368 >gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M04-240196] Length = 452 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A+I AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 478 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 178/362 (49%), Gaps = 17/362 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P + F AIKG DGH FI H + + T V + + + V DV+ Sbjct: 38 DSRQVKPGDLFIAIKGAKVDGHAFI-HKAAQAGASAALCTHPVEDVPEGFLQIV-VPDVV 95 Query: 93 GALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 AL+ A A R + + T I ITGS GKT+TKE + L T + SYN IG PL Sbjct: 96 AALHATARARTRRQPETTYIGITGSNGKTSTKEAIAAVLERHAPTLKTLASYNTEIGYPL 155 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 TL R+ + + E+G +GE++ L+ + P +VIT + +HL F E++ AK+ Sbjct: 156 TLLRLEPQHRYAVLEMGAQWVGELKMLSGITCPDWSVITNVGASHLGYFGSQEQVVIAKS 215 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQ 269 E+ + L G LNYDD + K+ A + IY +G+ + AD + K Q + Sbjct: 216 ELVQVLSPDGIALLNYDDPNVRAMNTKTSA---RVIY-YGQGEGADVRASKPGGDQLFGR 271 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 S++ + Q + + V H G H L + +D +AL P + RG+ Sbjct: 272 SFV-LSYQDQEVPVQLHIPGEHGIAIALAAAAVGCAAGLPLDVIRQALEDLKPAKRRGE- 329 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVL--SQISPHGEGRRIAVLGDMCEMGELSQS 387 TLID+SYNAN S+ A + S ++PH G+R AVLGD+ E+G+ ++ Sbjct: 330 --IKPGPNGSTLIDDSYNANRQSILAIAQAMHGSTLAPH--GKRWAVLGDILELGQYARE 385 Query: 388 FH 389 H Sbjct: 386 EH 387 >gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Desulforudis audaxviator MP104C] gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Desulforudis audaxviator MP104C] Length = 470 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 144/468 (30%), Positives = 222/468 (47%), Gaps = 44/468 (9%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 IQG P V ++ D+R +A E F A++G +DGHDF AV +GA ++V+ + Sbjct: 18 IQGE-----PSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGACGLLVSRE 72 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + G + V V D L AL LA+ R R +IA+TGS GKTTTK++LT L++ Sbjct: 73 VSVPSG---VAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDLLTAVLAAR 129 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVD----FGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + A + NN IG+PLTL +DVD + ELGM GEI L + P VI Sbjct: 130 FRVLATRENLNNEIGLPLTL----LDVDPVHEVAVVELGMRAPGEIDLLARICEPTGGVI 185 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I HL + IA AK E+ + + +G L+ + + + + Sbjct: 186 TNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRCRG----RVVR 241 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+S++ADF+L ++ + S V+ G E G H A N L + + L Sbjct: 242 FGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLELGLA 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 V L ++ R R A+ G T+I+++YNA+PAS+KAA+ VL++I+ Sbjct: 302 VSEIRAGL-----EQARASSLRQAIVKAGGLTIINDTYNASPASVKAALEVLAEIAA--- 353 Query: 369 GRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-----ALPRS- 421 GR +A+LG M E+G S H ++ + + + G + + D LP S Sbjct: 354 GRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAVGIADGAREAGLPASR 413 Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H ET+D ++ V++VK S + R++ L E Sbjct: 414 IWACHT-LEETVDTARRLAGENV----VILVKGSRAFQMERIVKGLAE 456 >gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] Length = 488 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 206/442 (46%), Gaps = 23/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85 + DSR + F + G +DGH F+ A + GA +VA+ + S+P Sbjct: 58 VCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGA-----QAALVAAGSNASLPEGLLH 112 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V D A +LA R + A ++A+TGS GKTTT+E++ AL+S+ A + NN Sbjct: 113 WRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAGKTTTRELIRAALASLGPIQASASNNNN 172 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL + E+GM GEI L+ +P IAVIT I AH+ E Sbjct: 173 DIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNIGTAHIGRLGSREA 232 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA+AK EI L+ G + + D E A+ I + G + QL Sbjct: 233 IAAAKCEITAALKLDGVVVIPAGDPLLETALARVWQGRIHRVALVGDPGLTNSQLPAAND 292 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ L + G H A+N L+ + S L D D+ + AL V P G Sbjct: 293 LADVDEQSGVLTLGEFDYRMPLAGRHNARNWLLARAVASGLNVDSDSLV-ALDVDVPG-G 350 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R L G T++DE+YNA+P ++ AA+ +L+Q P GRR AVLG M E+G+ S Sbjct: 351 RNRR----LKLGALTVLDETYNASPEAVLAALDLLAQ-QP---GRRFAVLGTMLELGDES 402 Query: 386 QSFH---IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H ++ A L L + V SG A+ +A + + ++ L Sbjct: 403 AALHRAVVERAVALKLDGLVVV-TSGAEATAMAEAGASLERFAVVASPEAAAEPLRGWLS 461 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 GD +++K+S RL+ L Sbjct: 462 AGDCLLLKASRGVALERLLPAL 483 >gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] Length = 427 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 I+ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G++NNHIG Sbjct: 71 DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + ++ G IF+ ++ + + S A GI+ I ++G +A F + C Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + QGK V H IG + N+L + + + +A++ + P R Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + + P + +LGDM E+G S Sbjct: 304 QFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H ++ E + V+L G H + K+ P + T + + ++ + G Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K S+S G +L ++L Sbjct: 408 YHILIKGSHSMGLEKLADIL 427 >gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 503 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 192/375 (51%), Gaps = 26/375 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V+ + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVDRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 V++ AL ++A A R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVENTELALARVA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P + DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + + + + I +G +AD Sbjct: 198 LGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLQISAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + Q + V QG++ +V G H N L G+ L A + + A Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPGRHNVLNALAATGLA--LGAGIALPVIA 314 Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L+ HP GR + L G LID+SYNANP S+ AAI L+ G+G V Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GDG--WLV 367 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G + H Sbjct: 368 LGDMRELGAEGVALH 382 >gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EUN1f] gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EUN1f] Length = 510 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 205/455 (45%), Gaps = 34/455 (7%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G+ P V + IDSR +AP F A+ G DGHDF AV V + Sbjct: 22 GVDPAAPVTSVVIDSRQVAPGSLFVALPGERVDGHDFAAAAVGA-------GALAVLAAR 74 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK----- 134 + +P V D L LA R R AT+I +TGS GKTTTK++L L Sbjct: 75 PVGVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLLGGHGEAGGP 134 Query: 135 ----KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 T A IGS+NN IG+PLT+ R + F + E+G +G I L L RP + ++ Sbjct: 135 GGLGATVAAIGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCALARPQVGLVL 194 Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AH+ ++ G IA AK E+ E + + LN DD + A+ A + Sbjct: 195 NVGSAHVGEYADGRRGIAVAKGELAEAASE--LVVLNADDPLVASMAARVQA--SAKVVL 250 Query: 250 FGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 FG +AD + + + + ++ ++ G+ + +G H N L L Sbjct: 251 FGTGASADVRAERIEVDAAGRAAFDLLASGECHRLRLGLVGAHQVANALAAAAAAIGLGL 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPH 366 A AL P+ R+R + G +++++YNANP SM+AA++ L I Sbjct: 311 APADAAAALERARPR----SRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALLDI--R 364 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G+GR AVLG M E+G + H +L +++ + + G L + +A + Sbjct: 365 GDGRAWAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAAREDVAWAG 424 Query: 427 SET----MDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 T +D F+ + GDVV+VK+S S G Sbjct: 425 ESTWVSGVDEAVAFLGGQVRPGDVVLVKASRSFGL 459 >gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] Length = 457 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 209/467 (44%), Gaps = 47/467 (10%) Query: 20 GIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVAS 77 G+V Q +G+S D+RSI + F A+ GP++DGHD++ A KGA VV +D V+ Sbjct: 16 GLVTQDVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSVSR 75 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + + VDD AL +A A R R + + A+TGS GKTT KEML LS + Sbjct: 76 KAA-----WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQNAEVL 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A G+ NN IGVPLTL + + + E G S GEI + T + P +A++ AHL Sbjct: 131 ATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTDISCPDVAILNNAMGAHL 190 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 F ++ + +KAEIF L +TG +N DD + SH G+ + +F S Sbjct: 191 EGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWW--LSHTEGLPRL-TF--SARG 245 Query: 257 DFQLRKWKQ--------C------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 D + W C ++VQLQ +G H N L Sbjct: 246 DLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQ---------VMGQHNVANALAAASA 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 VS + L F GR + + A +ID+SYNANP S+ AA+ +L Sbjct: 297 VSAQGMSLKDIASGLGSFSAVSGRMRPLKSARGA---LVIDDSYNANPGSVNAAMDLLVS 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---HVLALKDALP 419 + G + VLGDM E+G + H + + W G H +A DA Sbjct: 354 LP----GESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYDAAA 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+ ++ + L + G +++K S S R++ L E Sbjct: 410 GKQGQHF-KSHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTE 455 >gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101] Length = 456 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 122/381 (32%), Positives = 183/381 (48%), Gaps = 22/381 (5%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + G+ P V I DSR + E F + G +DGH F+ A G VV Sbjct: 17 QAAGVDPAAPVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGRAG 76 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + + + VDD L A +LA+ R + A ++A+TGS GKTTT+E++ AL + Sbjct: 77 DV-PPGLLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLGPV 135 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 A G+ NN IGVPLTL + + + E+GM LGEI L+ +P +AVIT I AH Sbjct: 136 MASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVITNIGTAH 195 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + E IA+AK EI L+ G + + D E I+ ++S + A Sbjct: 196 IGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLLE--------QAIQAVWSGRVQRVA 247 Query: 257 ---DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + E L + + G H A+N+L+ + + L + A Sbjct: 248 LAGDPGVDQADLLGELDETNDLLSVRGERIRLPLAGRHNARNLLLAVAVAQELGVGL-PA 306 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L V P GR +R L G ++DE+YNA+P ++ AA+ +L++ GRR A Sbjct: 307 LADLDVEVPG-GRNRR----LQLGGLRVLDETYNASPEAVLAALELLARQP----GRRFA 357 Query: 374 VLGDMCEMGELSQSFHIDLAE 394 VLG M E+GE S + H +AE Sbjct: 358 VLGSMLELGEQSVALHRQVAE 378 >gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Calditerrivibrio nitroreducens DSM 19672] Length = 446 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 28/438 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+IDSR + FFA KG DGH +I A+ KGA V+ + P+ V Sbjct: 26 ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDENYYDANK---PLVLVK 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A+ +L + I ITGSVGKT+TK +L++ LS K Y ++NN +GV Sbjct: 83 DTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNNELGV 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + + + + IFE+G ++ GEI+ L+ ++P + +IT + +H+ F ++EI Sbjct: 143 AIVTSNIDLGAQYAIFEIGTNNPGEIKSLSEFLQPDVGIITGVGHSHIGRFGSLKEITKE 202 Query: 210 KAEIFEGLEKTGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K I EG++K G +++N D S++ + +K FG SK++D + + Sbjct: 203 KLAISEGVKKDGVLWINDGVDTSYYNF----PEGINVK---KFGFSKDSDIYIEELNVEK 255 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E +++ + ++H H A N L + + + + L F P EGRG Sbjct: 256 EVNFIVNFNNFRYCFRINHPFS-HFAVNALPAIALAFENQFHYEEIYRGLDKFVPVEGRG 314 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + R N+ +I+++YNA ++ +A+ LS+I ++IA+LG+M E+ + Sbjct: 315 EIIRTQ-NK---IIINDTYNAGFEAVLSAVENLSKIDAP---KKIAILGEMAEIDGFEEK 367 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-V 446 + L + N + +L G + KD +V Y + L I + ++ GD V Sbjct: 368 LYSRLKNEVEKRNDIYFYLVG---ESFKD-FQSLENVSYFKDKSEL---INADILKGDGV 420 Query: 447 VVVKSSNSCGFYRLINLL 464 +VK+S S F L+ L Sbjct: 421 YLVKASRSKRFEELVEYL 438 >gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M0579] Length = 463 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 177/364 (48%), Gaps = 23/364 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ Sbjct: 34 LVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAALKD----A 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L + A G+ Sbjct: 90 LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRHRFGNEAVLATTGN 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 150 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 209 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 210 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVL 269 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 270 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 325 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 326 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 376 Query: 380 EMGE 383 E+GE Sbjct: 377 ELGE 380 >gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] Length = 420 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 188/391 (48%), Gaps = 16/391 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG +DG+ F A++KG L VV+ V + VD Sbjct: 2 VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDERYLL----VD 57 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R +I ITG+ GKTTTKE++ LS+ G+ NNHIGV Sbjct: 58 DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 117 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + I E+G + G+I LT + RP+ +IT I AHL F +E + Sbjct: 118 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRT 177 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ + G I FLN+DD + G++++ S+G S +A + R + Sbjct: 178 KGELYDFIRAEGGILFLNFDDDTL-----IDMSQGLQSV-SYGTSADATVRGRIVANNTP 231 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +++ V + +G + N L + + + AL+ + P R + Sbjct: 232 YLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNRSQ 291 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +LI ++YNANP SM+ A+ + H + + +LGDM E+G S+ Sbjct: 292 WIETERGN---SLIVDAYNANPVSMRVALDNFDSL--HTDKPLVLILGDMNELGAESKRE 346 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 H+ L E ++ + L G AL D+ P Sbjct: 347 HMALLERINTGRYRQILLCGPCFTALADSFP 377 >gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus influenzae 10810] Length = 457 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 130/434 (29%), Positives = 206/434 (47%), Gaps = 35/434 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ D+R FFA+KG +D H ++ + V + S+SIP Sbjct: 25 VEEINTDTRKSVSNSLFFALKGEKFDAHQYL----DQAVAQGAVAVVVQQENSSISIPQL 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI----GS 142 V D AL +LA R + +A+TGS GKTT KEM L + G+ Sbjct: 81 VVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTNGN 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPAHL F Sbjct: 141 FNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGS 200 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQL 260 + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK D+ + Sbjct: 201 LAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK----DYSV 252 Query: 261 RKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIK 315 + Q +EQ ++ V QG+ +++ +G H +N L + V ADV ++ Sbjct: 253 KNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLE 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S + +G+ + + L+D++YNAN S+ AAI VL + I + Sbjct: 311 QRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----DAFLILCV 360 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+GE S + H ++ + ++L N+ V G + +A+ +E +D L Sbjct: 361 ADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISEAVLGKHFTDKTEMVDFLVP 420 Query: 436 FIQSSLVDGDVVVV 449 I++ L VVV Sbjct: 421 LIENQLQQNKKVVV 434 >gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] Length = 466 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/411 (28%), Positives = 180/411 (43%), Gaps = 17/411 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P+ T I G SI + + DSR++ P + F A+KG +D HDF+ V Sbjct: 4 QPMTTLQQAAGWIAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVV 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA V+V+ + + +P V D L +LA R +A+TGS GKTT Sbjct: 64 ARGAAAVMVSRKV-----DVDVPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTT 118 Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ A G+ NN IG+PLT+ R+ + ELGM+H GE +L Sbjct: 119 VKEMIAAIFAAAVGEGDRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGETIYL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKA 237 + +P +AV+T H +E +A A L G D +S Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHASAIAALPADGVAVFPVDAESGGAYAAI 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A G + + SFG +AD + + Q ++V + + H +G H +N L Sbjct: 239 WRQAAGTRKVLSFGTDASADVRATVSLENGVQV-LDVTAPDRRFTLRLHVLGVHNVRNAL 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 DV ++ F +G R + +ID++YNANP SM+AAI Sbjct: 298 AATACALAAGVDVAAIQAGIAGFTAVKG---RLQVKHTPAGTVVIDDTYNANPDSMRAAI 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VL+ + R+ VLGDM E+G+ FH ++ I +W +G Sbjct: 355 DVLAGFATP----RLLVLGDMGEVGDQGPMFHTEIGAYARERGIDALWATG 401 >gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 500 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 137/482 (28%), Positives = 214/482 (44%), Gaps = 59/482 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----------VASIG 79 + DSR +AP F A+ G DGHD++ A ++GA L +V + + G Sbjct: 31 VEFDSRKVAPGSIFMALPGATVDGHDYVAAAGEQGAALAIVGRPVGYPALLAPASERAEG 90 Query: 80 SLSIPVFGVDD------VLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + VFG D+ VL A++KLA V A ++ +TGS GKT+TK+++ Sbjct: 91 TDNSAVFGADEEGYGAAVLAAVDKLARHNTDVLAD-EEGMVVVGVTGSAGKTSTKDLIGA 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L + +T A GS+NN IG+P T R F + E+ +G I LT + P I V Sbjct: 150 LLGDLGETVAPPGSFNNEIGLPYTALRASRGTKFLVSEMSARGVGHIAHLTTVTPPKIGV 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIK 245 + AHL F E IA AK E+ E L E G LN DD ++ ++ A + Sbjct: 210 ELNVGSAHLGEFGSREAIAQAKGELVEALPAAEDGGIAILNADDDAVIAMRHRTRAR-VV 268 Query: 246 TIYSFGKSK---NADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---- 296 T +SK AD+ + + + S+ G+ +++ G H N Sbjct: 269 TFALDERSKTGERADYWASDIRLDEVARASFRLHHPYGEPVDIRLGVFGAHQVSNALAAA 328 Query: 297 -------LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 ++ + +L V + + V ++G T+I++SYNAN Sbjct: 329 AVAVESGMLPASVARVLGNHVAASANRMDVRTRRDG-------------ATIINDSYNAN 375 Query: 350 PASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406 P SM+A I L+ + E AVLG M E+GE S H +L + L I H + Sbjct: 376 PESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESAEEHTELGKFLGTRGIDHAVIVG 435 Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +G + A+ DA + E +D F+ + DVV+VK+S S G + + LL Sbjct: 436 TGVNQRAIADAAREHGVDTRSVEDVDAAVNFVDQHVKPKDVVLVKASYSDGLWAVAEGLL 495 Query: 466 EE 467 + Sbjct: 496 AD 497 >gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] Length = 461 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 130/463 (28%), Positives = 203/463 (43%), Gaps = 64/463 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFIL--HAVQKGAGLVVVNTDMVASIGS--LSIPVFG 87 +DSR P F A+ G H DGHD+ HAV +GS P Sbjct: 31 VDSRQAVPGGLFVAVVGEHVDGHDYAAGAHAV----------------LGSRPTEAPTIV 74 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D + AL KLA R AT++A+TGS GKT TK+ L LS+ T A GS+NN + Sbjct: 75 VRDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTKDYLARILSAAGSTVATSGSFNNEL 134 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLT+ R + + + E+G +G I+ L + P +A + + AH+ F + IA Sbjct: 135 GLPLTVLRAHPETRYLVLEMGARRIGHIKHLCEIAPPDVAAVLNVGTAHIGEFGSRDSIA 194 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------ 261 AK EI L+ GT LN D + +++ A + ++G +AD R Sbjct: 195 FAKGEIVAALQPEGTAVLNAGDPLVAEMTSRTRA----RVLTWGPD-DADVSERGSEVDD 249 Query: 262 ----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN---MLMTLGIVSILTADVDTAI 314 ++ + W V+LQ G H AQN V I AD+ + Sbjct: 250 LGRPSFEIGYDDEWYPVRLQQS---------GLHQAQNALAAATMALAVGIPLADIAAGL 300 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 A + P R +++++YNANPAS+ AA+ L+ I R +AV Sbjct: 301 SAATASSP-----MRMEVHERADGLIVVNDAYNANPASVVAALESLAVIGRRRHRRTVAV 355 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG-- 432 LG+M E+G S H+ + + V + G + + L + DG Sbjct: 356 LGEMLELGRESFDGHVRVGRAAARLGTDIVVVVGAAAGGIVEGL----EAVAAWRGDGVV 411 Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 +++ +++ GDVV+VK+S+ + + + LL+ P Sbjct: 412 AEEVEEALEWVRENVLSGDVVLVKASHGVALWEVADALLDTDP 454 >gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides sp. 2_1_7] gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] Length = 427 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 I+ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G++NNHIG Sbjct: 71 DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + ++ G IF+ ++ + + S A GI+ I ++G +A F + C Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + QGK V H IG + N+L + + + +A++ + P R Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + + P + +LGDM E+G S Sbjct: 304 QFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H ++ E + V+L G H + K+ P + T + + ++ + G Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K S+S G +L ++L Sbjct: 408 YHILIKGSHSMGLEKLADIL 427 >gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] Length = 453 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 16/394 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + DL + + + I + GI+IDSR + + F G + DGH++I A +KG Sbjct: 3 YLVKDLEKILNAKKVNITSDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKG 62 Query: 65 AGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + + D V+S + V+D A+ LA A IAITGS GKTTTK Sbjct: 63 AAASLSLKDDFVSSNN-----IIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++T LS+ K + G++NN +GVPLT+ P D + + E+G G++ FL+ LV Sbjct: 118 DIITSVLSTKYKVHKTQGNFNNELGVPLTILAAPEDSEILVLEMGADGFGQLDFLSKLVE 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P+ VIT I +H+ F E IA AK EI G++K G N D+ LLK+ + Sbjct: 178 PNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEV---LLKSLVDSSD 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T S G++ D L + ++ ++ +L + G H N++ I Sbjct: 235 FNTT-SCGENNYNDIILENYTITRDR--IDFKLNISDEQYFTKLKGKHNLFNIMFATAIA 291 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 S + + KA+ + E G R + + +I+++YNA+P SMKA + V+S Sbjct: 292 SKIGLTNEEIRKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVVSSF 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + VLG M E+G ++H ++ E +S Sbjct: 350 DDF--DFKTLVLGSMFELGPNEVNYHAEVGEYIS 381 >gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] Length = 475 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/393 (29%), Positives = 175/393 (44%), Gaps = 35/393 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPVFGV 88 +S DSRS P + F AIKG +D HDF+ + V+ +VA + G S+P V Sbjct: 34 VSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARN-----VSAALVARVPGGWSVPALRV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNN 145 D L LA R + ++A+TGS GKTT KEM+ A + A G++NN Sbjct: 89 ADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVDARLATAGNFNN 148 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL R+ + ELGM+H GE L + P +AV+ H + +E Sbjct: 149 DIGLPLTLFRLNAAHRLAVVELGMNHPGETSLLAKIAEPTVAVVNNAQREHQEFMATVEA 208 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A + L G DD++ + + A G + + DF L ++ Sbjct: 209 VALEHASVIHALTPDGIAVFPADDAYASIWRVA--ATGNRIV---------DFALNTAER 257 Query: 266 CSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +E + + +Q + +G H A N L +D + L Sbjct: 258 TTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALAATSAALAAGVSLDAIKRGL 317 Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375 F +GR + AL T+ID++YNANP SM+AAI VL S SP R+ V+ Sbjct: 318 ESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAIDVLASHASP-----RVLVM 372 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 GDM E+G+ FH ++ I ++ G Sbjct: 373 GDMGEVGDNGPEFHREIGAYAKERGIDALYAMG 405 >gi|33603177|ref|NP_890737.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella bronchiseptica RB50] gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella bronchiseptica RB50] Length = 945 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 17/375 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + A G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + + G + + FG D + Sbjct: 686 AHENGAVISALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + S E+ G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++ G LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNI 401 + H ++ + + I Sbjct: 856 AMHREVGDYAREHGI 870 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 32/372 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87 + +DSR I P + F A G DG F+ A+ +GA ++ T+ VA G+ ++PV Sbjct: 32 LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141 + +LGAL R +++AITG+ GKT+ + L L+ + K IG Sbjct: 92 LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150 Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191 S + P LT+ R L S +G E L H +R +A T Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL ++ AKA +F+ + + +N DD E L A A +KT YS Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + AD R + + + L ++V +G H N+L+ G +S L + Sbjct: 267 QGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326 Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + L+ P +GR + ++ A QG ++D Y P ++ A++ L ++ Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384 Query: 365 PHGEGRRIAVLG 376 GR + V G Sbjct: 385 QARGGRLVCVFG 396 >gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 1_1_14] gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 1_1_14] Length = 432 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 192/386 (49%), Gaps = 26/386 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ +V P +IT + AHL F E + Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K T+F+++D+++ + + + T +Y G+ + N+ + +W Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + GKS +V IG + N L + I + +AL+ + P+ Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382 R + + N TLI ++YNANP SM AA+ + PH ++ +LGDM E+G Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 S + H +A+ L VWL G Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVG 382 >gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] Length = 427 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 I+ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G++NNHIG Sbjct: 71 DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + ++ G IF+ ++ + + S A GI+ I ++G +A F + C Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + QGK V H IG + N+L + + + +A++ + P R Sbjct: 244 PFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + + P + +LGDM E+G S Sbjct: 304 QFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H ++ E + V+L G H + K+ P + T + + ++ + G Sbjct: 355 DELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMTEELRRQPLKG 407 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K S+S G +L ++L Sbjct: 408 YHILIKGSHSMGLEKLADIL 427 >gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] Length = 560 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 132/519 (25%), Positives = 219/519 (42%), Gaps = 93/519 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R + F G D H FI A ++GA + D+ +G P Sbjct: 47 IAGVVTDNRQVERDFLFIPFVGEKVDAHRFIPQAFEQGAACSLSEEDLTDPVG----PCI 102 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ AL +A R + K ++ I GSVGKT+TKEM+ LS G++NN Sbjct: 103 RVESSQRALMDIAAYYRRQLKLPLVGIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNE 162 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P+T+ ++ + E+G+ + G++ L + RP+I VIT I AHL + I Sbjct: 163 IGMPMTVLKIRDHHQVAVVEMGIDNFGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGI 222 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA------LGIKTIYS----------- 249 ++K E+F+ L ++ LN DD ++ A LG+ + + Sbjct: 223 LASKTEVFDYLADGASVILNGDDDHLNCIRRAGGARIIFYGLGVDSSAAAREKDKDKLAR 282 Query: 250 --------FGKSKNAD------FQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGI--- 288 K+K+ D F + ++ + +++ L ME + Sbjct: 283 LNGQIAEHLAKAKDRDGLADGCFDMSAAYTDQERLARETYRAENLSALGMEGMSASFITP 342 Query: 289 -----------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G H N L + L D+D + GR L+ G Sbjct: 343 EGDFEAVIPIPGEHNVYNALAAAAVGQSLGLDLDEIKAGMETASTISGRAH----FLHLG 398 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 TLID+ YNANP+SM+A+++VL++ +GRRIAVLGDM E+GE + + H +L E + Sbjct: 399 GLTLIDDCYNANPSSMRASLAVLAR----AKGRRIAVLGDMGELGENAPAMHYELGERAA 454 Query: 398 LYNISHVWLSGFHVLALKDALPRS----------------------------IHVHYSET 429 I ++ +G AL + R + ++ Sbjct: 455 EEGIDMLYAAG----ALGREIARGASDASLNRREEGAFFAEEGGGAHRREKPMEIYACPD 510 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 D L + L +GD V+VK+S+ GF ++ + E + Sbjct: 511 RDALLADLLGRLKEGDTVLVKASHFMGFEEVVKAIQESY 549 >gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] Length = 432 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 212/448 (47%), Gaps = 42/448 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR+ F A+KG +++G+ F A++ G+ +V+ G + V Sbjct: 15 GVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAGDTHYIL--V 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L +LA R R II ITG+ GKTTTKE+++ LS G+ NN IG Sbjct: 73 DNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + D GI E+G SH G+I+ L + P +IT + HL F E + Sbjct: 133 VPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVIR 192 Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256 K E+++ L + G TIF++ D+ + L A G+ I S+G+ + N+ Sbjct: 193 TKGELYDYLRQKGDSTIFIHQDNPYLTKL-----AWGLNPI-SYGEQDGLYVNGHVTGNS 246 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + +WK E S EV + IG + N L + I + + +A Sbjct: 247 PYLIFEWKSGKEGSLHEVHTR---------LIGEYNLSNALAAVTIGCFFGVEPEKIDQA 297 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ + P+ R + + A N TLI ++YNANP SM A+IS + G+++ +LG Sbjct: 298 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILG 350 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ S H + + L + V L G A + P Y + L Sbjct: 351 DMRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPT-----YPDA-PALITE 404 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + G +++K SN +++ L Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432 >gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] Length = 471 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 212/458 (46%), Gaps = 33/458 (7%) Query: 23 PQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V G + DSR + P F A G DGHDF V+ GA V+ + + Sbjct: 23 PSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAAAVVEAGAAAVLASR-------PV 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P V DV AL LA + T++A+TGS GKT+TK+++ L T G Sbjct: 76 GVPAIVVPDVQAALGALARHVVRKLGTTLVALTGSAGKTSTKDLVAQVLRRKAPTVFTPG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S NN IG+PLT + F + E+G +G IR+LT L P I ++ + AH+ F Sbjct: 136 SLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYLTGLTPPKIGLVLNVGTAHIGEFG 195 Query: 202 GIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 G E+IA AK E+ E L E+ G LN DD + +++ A + FG+S AD Sbjct: 196 GREQIAQAKGELVEALPSAEEGGAAILNADDPLVRAMASRTKA----RVILFGESGEADV 251 Query: 259 QLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + Q + + +V G H N L + L V AL Sbjct: 252 RAENVTLTDAGQPAFRLHTPSGASDVTMRLYGEHHVSNALAAAAVAHELGMSVSEIATAL 311 Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AV 374 S + G R+R + + T+++++YNANP SM+AA+ L+ + G+GRR AV Sbjct: 312 S----EAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALRALAAM---GKGRRTWAV 364 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSE 428 LG M E+G+ + + H + + N+ + G + A + VH S+ Sbjct: 365 LGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLGAYNEGSWGEESVHVSD 424 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++S L GDVV+VK+S S G + LL+ Sbjct: 425 AQAAIDL-LRSQLRPGDVVLVKASRSVGLESVAQALLD 461 >gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis ES14902] Length = 452 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] Length = 432 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 209/448 (46%), Gaps = 42/448 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR+ F A+KG ++G+ F A++ G+ VV+ A G + V Sbjct: 15 GVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAGDTHYIL--V 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L +LA R + II ITG+ GKTTTKE+++ LS +G+ NN IG Sbjct: 73 DNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNLNNPIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + G+ E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 133 VPLTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIR 192 Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNA 256 K E+++ L + G TIF++ D+ + + A G+ + ++G+ + N+ Sbjct: 193 TKGELYDYLRRQGNSTIFIHQDNPYLTQI-----AWGLNPV-TYGEEDNLYINGHVTGNS 246 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + +WK EVQ Q IG + N L + I + KA Sbjct: 247 PYLTFEWKAGKAGERHEVQTQ---------LIGDYNFPNALAAITIGHFFGVEAAKIDKA 297 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L + P+ R + + A N TLI ++YNANP SM AAIS + G ++ +LG Sbjct: 298 LHEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLAAISNFHNMQ---AGGKMLILG 350 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ S H + + L Y V L G A + P Y + L Sbjct: 351 DMRELGKDSPGEHQKIVDCLEEYGFKDVALVGELFAATRHTYPT-----YPDA-PALIAE 404 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + G +++K SN +++ L Sbjct: 405 LQKNKPCGKTILIKGSNGIKLNTVVDYL 432 >gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] Length = 482 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 23/461 (4%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 H +G P + ++ DSR++ P + F A+ G +D HDF+ V +GA V+V+ + Sbjct: 22 HLVG--PDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLAG 79 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--- 133 ++ + V V D AL +LA R + ++A+TGS GKTT KEM++ + Sbjct: 80 ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFARAVGE 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + A G+ NN IG+PLTL R+ + ELGM+H GE L + +P +A+I Sbjct: 140 EARLATAGNLNNDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLATIAQPTVALINNAQ 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249 H +E +A A + L G D + + L +A A G + + Sbjct: 200 REHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLD 256 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG A ++ ++V +G H A+N L Sbjct: 257 FGIEGGAVSA--TVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAATACSLAAGIA 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +ALS F P +GR +R + ++ G ++D++YNANP S++AAI L+ + Sbjct: 315 PEVIAQALSAFAPVKGRLQR-KPGVHGGL--VVDDTYNANPDSVRAAIDALATLP----A 367 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R VLGDM E+G +FH ++ I V +G + DA H++ + Sbjct: 368 PRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARHMVDAFGSGAR-HFA-S 425 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + L ++ G V+VK S R+++ L+ + PA Sbjct: 426 AEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] Length = 452 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAA+ VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis 961-5945] Length = 452 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAA+ VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|33598266|ref|NP_885909.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella parapertussis 12822] gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella parapertussis] Length = 945 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 17/375 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + A G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + + G + + FG D + Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + S E+ G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++ G LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNI 401 + H ++ + + I Sbjct: 856 AMHREVGDYAREHGI 870 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 32/372 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87 + +DSR I P + F A G DG F+ A+ +GA ++ T+ VA G+ ++PV Sbjct: 32 LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141 + +LGAL R +++AITG+ GKT+ + L L+ + K IG Sbjct: 92 LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150 Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191 S + P LT+ R L S +G E L H +R +A T Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL ++ AKA +F+ + + +N DD E L A A +KT YS Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + AD R + + + L ++V +G H N+L+ G +S L + Sbjct: 267 QGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326 Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + L+ P +GR + ++ A QG ++D Y P ++ A++ L ++ Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384 Query: 365 PHGEGRRIAVLG 376 GR + V G Sbjct: 385 QARGGRLVCVFG 396 >gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] Length = 607 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 120/421 (28%), Positives = 200/421 (47%), Gaps = 43/421 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F + L+ +Q + + +DSR + FFAI +G+ ++ + KGA Sbjct: 190 FEEFLKKVQ-----------IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGAS 234 Query: 67 LVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 LV+ NTD+ V V D + + LA R + ++ ITGS GKTTTK++ Sbjct: 235 LVIADNTDIKDK------RVIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDI 288 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS KT G+YNNHIG+P TL + + F + E+GMS LGEIR L + P+ Sbjct: 289 VYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPN 348 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I +H+ + + AK E+ E ++K T F+ DD + L Sbjct: 349 YAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKENT-FVCGDDEYLGKLDVNKVGFNGN 407 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + K ++ DF + K + E+ L GK + + I +A+ + +T Sbjct: 408 NTH---KIESYDFSNKGSKFILDGKEYEMSLLGKH-NISNTSIAIELAKKIGLT------ 457 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +K + + + R++ + G I+++YNA+P SMKAAI L++I Sbjct: 458 -DEEIQKGLKEIKISNM------RFQ-EIKIGNDIYINDAYNASPMSMKAAIDTLNEI-- 507 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + + +IA+LGDM E+GE +H+D+ L I ++L G + D ++ Sbjct: 508 YNDKYKIAILGDMLELGENEVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEE 567 Query: 426 Y 426 Y Sbjct: 568 Y 568 >gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] Length = 428 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 134/434 (30%), Positives = 210/434 (48%), Gaps = 28/434 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG ++G+ F A+ +G VV+ A S + VD Sbjct: 16 VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGESYIL----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + K II ITG+ GKTTTKE+++ LS K G+ NNHIGV Sbjct: 72 DCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ L + P +IT + AHL F E + Sbjct: 132 PLTLLRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNVGKAHLLGFGSFEGVIKT 191 Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + G TIF+ ++S+ L A +H L +G++ F K CS Sbjct: 192 KGELYDFLREKGNATIFIQNENSY---LNAIAHGL---HCVRYGQASGL-FVSGKLLSCS 244 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + + V H IG + N L ++ + + +ALS + P+ R Sbjct: 245 PFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDICEALSTYMPQNNRS 304 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 + ++ G LI ++YNANP SM AA+ Q+ +PH ++ +LGDM E+GE S Sbjct: 305 Q----LVDTGRNKLIVDAYNANPTSMMAALENFRQVQAPH----KMVILGDMKELGEASL 356 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + L V L+G A+ A + H+ + +D + ++ S G Sbjct: 357 EEHRKIVGFLDGCRFDRVMLAGPEFKAVASA-----YEHF-DNVDAVKEALEKSKPVGFT 410 Query: 447 VVVKSSNSCGFYRL 460 +++K SNS +L Sbjct: 411 ILIKGSNSMKLSQL 424 >gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] Length = 463 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 35 VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 92 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 150 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 209 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 210 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 269 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 270 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 325 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SM+AAI VL+++ RI V+GDM E+ Sbjct: 326 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGEL 378 Query: 382 GE 383 GE Sbjct: 379 GE 380 >gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 503 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 24/374 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV GA V+V+ + A LS+P Sbjct: 23 MIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVACGASGVLVDRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 V++ AL ++A A R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVNNTELALARIA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNA 256 + +A K I+ L G +N DD+F FE + +S + + + +G +A Sbjct: 198 LGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGVQASA 256 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + R+ + + V QG++ ++ G H N L G+ L A + + Sbjct: 257 EITARQLRLHPGGAQFTLVTPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVI 313 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A + + G++ L G LID+SYNANP S+ AAI L+ GEG VL Sbjct: 314 AAGLAQARPVAGRQIAQTLPNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVL 368 Query: 376 GDMCEMGELSQSFH 389 GDM E+G + H Sbjct: 369 GDMRELGAEGVALH 382 >gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G +IA AK+EI++GL + G + +D + + S +T +A+ + Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQTSSQGHQQQTFGVDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + +D + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAGALALAAGLSLDDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis G2136] Length = 436 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 8 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 64 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 65 --VDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 182 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 183 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 243 KPLSCE----FDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 298 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAA+ VL+++ RI V+GDM Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMP----APRIFVMGDMG 349 Query: 380 EMGE 383 E+GE Sbjct: 350 ELGE 353 >gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 127/448 (28%), Positives = 211/448 (47%), Gaps = 22/448 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR++ P + F + G +DGH+F+ A KGA ++ + S IPV V Sbjct: 28 IQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKGASAIIAQQPLFDL--SAGIPVLLVQ 85 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R T++A+TGS GKT+TKE + L + ++NN +GV Sbjct: 86 DTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKECIAGVLGRRGQAAKSYKNWNNRLGV 145 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL + + +F + E G+S GE+ L ++ P +AV+T +AP HL + + Sbjct: 146 PLNILSFSGEEEFWVLEAGISEPGEMAALASIIAPDVAVVTNVAPVHLEGLVDVPTVVEE 205 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K + + L GT+ L+ D + EL + + A+ KT +S +++ A + + Sbjct: 206 KLHLCDHLTHNGTLVLSVD--YPELSQRAASAVCPKTYFSV-QAEKAPYWCEPIQDPEVY 262 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++ G E +MA+N+ + L +V+ + L E RG+ Sbjct: 263 GRFQLSCDGVRTEFDLPWAADYMAENLAAAACVGHRLGLEVEEIVAGLQTAELPEHRGQL 322 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L G +ID++YNANP SM+ AI ++ + GE + VLG+M E+G +++ H Sbjct: 323 L--TLPGGI--VIDDAYNANPHSMQRAIRAAARRA--GERPLVLVLGEMAELGPDAEAAH 376 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK------DALPRSIHVHYSETMDGLF-LFIQSSLV 442 L V+ + V+ G H A+ D R V + ++ + F + S Sbjct: 377 TQLGRVVGAVAPTAVYYQGEHADAVDCGAREVDPDLRIQRVRSPQDLENAWGAFAKRS-- 434 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFPA 470 +V+VK S S + I +L +EF A Sbjct: 435 --PLVLVKGSRSGRMEQYIQVLQKEFGA 460 >gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis 8013] Length = 452 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SM+AAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 482 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 136/471 (28%), Positives = 220/471 (46%), Gaps = 42/471 (8%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V+G + IDSR P F A+ G DGHDF AV GA +V+ + A Sbjct: 23 PEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFAASAVADGAAAALVSRPVDAP---H 79 Query: 82 SIPVFGVDDVLGALNKLA--VAARLR------SKATIIAITGSVGKTTTKEMLTIALSSI 133 + G + V+ AL +LA VA L +A ++A+TGS GKTTTK+++ ++ + Sbjct: 80 LLAEGGDEGVVAALTRLARHVARELSDPRRGAERAEVVAVTGSSGKTTTKDLIAQVVARM 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T A GS+NN IG PLT+ R + + E +G I L + P I V+ + Sbjct: 140 GPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAAARGIGHIAHLCGVAPPRIGVVLNVG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSFFELLKAKSHALGIKT 246 AH+ F + IA AK E+ E L G LN DD + A++ A Sbjct: 200 SAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGVAVLNADDPRVNAMAARTRA----R 255 Query: 247 IYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + ++G ++A + ++ S+ + L G++ V +G H N L + Sbjct: 256 VVTYGLGEDATVRATDVVMRETGAPSFT-LHLAGRTARVELALVGAHQVHNALAAAAVAD 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQI 363 L VD +AL P R+R + + TL++++YNANP SM+AA++ L + Sbjct: 315 ELGMGVDEIAEALGAATPV----SRWRMEVTEHAGATLVNDAYNANPESMRAALTTLGAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------ALK 415 + + R IAVL M E+GE H + E+ + ++H+ + G A + Sbjct: 371 AR--DRRSIAVLAHMAELGEGGGVEHERIGELAARTGVAHLVVVGEAAEGIAVGAEGAAR 428 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + V ++ + +++ + GDVV+VK S G R+I+L+ E Sbjct: 429 QGLWQGECVRVADVHE-AAAAVRARMRTGDVVIVKGSRVAGLERVIDLITE 478 >gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] Length = 417 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 185/381 (48%), Gaps = 29/381 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R I + F+A+ G ++DG++++ A+ KGA V + + S+++ V Sbjct: 13 GVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVTV----V 68 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L L LA R II++TGS GKTTTKE++ L +G+ NNHIG Sbjct: 69 EDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQQFNVKGTLGNLNNHIG 128 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ + G+ E+G +HL EI L+ + P +IT AHL F + I Sbjct: 129 VPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLITNYGKAHLEGFGSEKNIII 188 Query: 209 AKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+FE L+ G T + + D E LK + GI+ + S K Sbjct: 189 GKSELFEHLKAHGKTAIVGHWDQ--EQLK---RSQGIERFITSTDS----------KLIK 233 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + ++ ++ +G+ + IG + NML+ + I + + LS + P R Sbjct: 234 AEPYISLEFEGQKSDT--QLIGEYNYHNMLLAAAVGQIFNMSTTSILNGLSQYTPNNNRS 291 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + +I ++YNANP+SM A LS +S E +IAVLGDM E+G+ S++ Sbjct: 292 Q----IIQSDNVKIILDAYNANPSSMSVA---LSNLSKQKESHKIAVLGDMFELGKYSKT 344 Query: 388 FHIDLAEVLSLYNISHVWLSG 408 H + ++ + +L G Sbjct: 345 EHQKIVDLTKQLGLDQTYLIG 365 >gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] Length = 468 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 112/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S G ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ A ++ A G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ GI + + G ++ DF L + Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALHGLGRD 253 Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + S + + ++V + +G H A+N L + L Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVPLAAVKAGLE 313 Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F P +GR + AL T+ID++YNANP SM+AAI VL+ S R+ V+G+ Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369 Query: 378 MCEMGELSQSFHIDL 392 M E+G+ +FH ++ Sbjct: 370 MGEVGDEGPAFHREI 384 >gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] Length = 482 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 52/473 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P G+ IDSR++ P F A G DG+ F A++ GAG VV+ + + L+ Sbjct: 22 PDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELVDLA 81 Query: 83 IP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + + +D L +LA R R + T+I ITGS+GKTTTK++L L+ + +A Sbjct: 82 LEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAKRYRVHA 141 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++N+ IG+PLT+ P D + E+GMS GEI L+ +P +IT + +H+ Sbjct: 142 TAGNFNSLIGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQPTFGIITKVGTSHIG 201 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIF--------LNYDDSFFELLKAKSHALGIKTIYSF 250 E IA AKAEI G+ + F L+ +D F + I +F Sbjct: 202 MLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFI-----------IENF 250 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQL-------------QGKSMEVVHHGIGYHMAQNML 297 + D L + ++L G S + G N L Sbjct: 251 ARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQSVPNAL 310 Query: 298 MTLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + L ++D A L + G+R + +ID+SYNA+P SM Sbjct: 311 FAAAVAHRLGVPGFEIDEAFGELQM------TGRRTQVRHAACGARVIDDSYNASPESMA 364 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLA 413 A +++ S + G RIAVLG+M E+G+ ++ H + + S + + G + Sbjct: 365 AGLNLFSTLPCTGS--RIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARV 422 Query: 414 LKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + DA V + D L + + D+V+VK S G R + Sbjct: 423 MADAARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLVKGSRFVGLDRFVE 475 >gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 432 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 212/442 (47%), Gaps = 32/442 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ + P +IT + AHL F E + Sbjct: 134 PSTLLRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K T+F+++D+++ + + + T +Y G+ + N+ + +W Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + GKS +V IG + N L + I + +ALS + P+ Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALSGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382 R + + N TLI ++YNANP SM AA+ + PH ++ +LGDM E+G Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S + H +A+ L VWL G A + + +V E + L ++ Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQTYPNVQ--EVIKEL----EADKP 410 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 G +++K SN +++ L Sbjct: 411 KGYTILIKGSNGIKLCSVVDYL 432 >gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] Length = 431 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 179/385 (46%), Gaps = 17/385 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + ++ D+R + F A+KG +D HDF +A+ GAG ++V+ ++ + +P Sbjct: 1 MITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSKRLL-----VDVPQ 55 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL + A R + ++A+TGS GKT+ KEM L G++NN Sbjct: 56 IVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 115 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + Sbjct: 116 DIGVPLTLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALVNNLAAAHLEGFGSLAG 175 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A AK EIF GL G +N D + + L K ++ F D Sbjct: 176 VAQAKGEIFAGLPANGIAIINADSHDWSHWQT---TLAHKQVWRFSPLGGEDIDFYATDL 232 Query: 266 CSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 EQ M L VV G H N L + + AD+D LS Sbjct: 233 RIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADLDAVRVGLSQLKAV 292 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + L G L+D++YNAN SM AA+ VL+++ G R+ V GDM E+GE Sbjct: 293 PGR--LFPLVLADGKL-LLDDTYNANVGSMTAAVQVLAEMP----GYRVMVAGDMAELGE 345 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 ++ H + L I V G Sbjct: 346 TAEDCHRQVGNAAKLSGIDKVLTVG 370 >gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium resistens DSM 45100] Length = 516 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 203/467 (43%), Gaps = 45/467 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----- 84 + DSR I P F A+ G DGHD+ A ++GA L+VV + A +L P Sbjct: 43 VEFDSRRIKPGGIFMALPGAQVDGHDYAASAAEQGAALLVVGKRVGAP--ALVAPSVELR 100 Query: 85 -------VFGVDD------VLGALNKLAVAARLRSKA-------TIIAITGSVGKTTTKE 124 F D VL A+++LA R + A T++ +TGS GKT+TK+ Sbjct: 101 QEASNASAFEHDTQGHGAAVLAAIDRLA---RFNTDALVAEHGMTVVGVTGSAGKTSTKD 157 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L T A GS+NN IG+P T R + + E+ +G IR LT + P Sbjct: 158 LIGAILREAGPTVAPPGSFNNEIGLPYTALRAEEGTKYLVSEMSARGVGHIRHLTEVTPP 217 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +I V+ + AHL F + IA AK E+ E L + G LN DD + A++HA + Sbjct: 218 NIGVVLNVGSAHLGEFGSRDAIAQAKGELVEALPENGLAVLNADDDKVAAMAARTHARVV 277 Query: 245 K------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQN 295 + T G+ D+ Q E + L G + V G H N Sbjct: 278 RFSTSQETCEWAGREVAVDYYASDI-QLDEVARARFALHHPYGDPVAVELGVFGAHQVSN 336 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + +AL+ R G T+I++SYNANP SM+A Sbjct: 337 ALAAAAVGMECGMSATDVARALNGHVAASVNRMDVRTRARDG-VTIINDSYNANPESMRA 395 Query: 356 AISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVL 412 I L+ + +G AVLG M E+G+ + H DL LS I H + +G + Sbjct: 396 GIDALAYTASGRDGAESWAVLGQMGELGDDATEAHADLGHSLSQRRIRHAVIVGNGVNQQ 455 Query: 413 ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 AL A + H E D F+ SL DVV+VK+S S G + Sbjct: 456 ALAHAAREDGVDTHVVEDADAAVNFLDLSLRKSDVVLVKASYSDGLW 502 >gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] Length = 475 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 210/448 (46%), Gaps = 42/448 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI+ DSR+ F A+KG ++G+ F A++ G+ VV+ A G + V Sbjct: 58 GITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAGDTRYIL--V 115 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L L +LA R + II ITG+ GKTTTKE+++ LS +G+ NN IG Sbjct: 116 DNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNLNNPIG 175 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + G+ E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 176 VPLTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIR 235 Query: 209 AKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NA 256 K E+++ L + G TIFL+ D+ + + A G+ I ++G+ N+ Sbjct: 236 TKGELYDYLRRQGNSTIFLHQDNPYL-----REIARGLNPI-TYGEENSLYINGHVTGNS 289 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + +W+ E + +V + IG + N L + I + + KA Sbjct: 290 PYLAFEWRAGKEGEFHQVHTR---------LIGEYNFPNALAAVTIGHFFGVEAEKIDKA 340 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ + P+ R + + A N TLI ++YNANP SM AAI + +++ +LG Sbjct: 341 LNEYEPRNNRSQLKKTADN----TLIIDAYNANPTSMLAAIGNFRNMQAE---KKMLILG 393 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ S H + + L Y V L G A R + Y + L Sbjct: 394 DMRELGKDSAEEHQRIVDYLEEYGFEDVILVGELFAAT-----RHTYTTYPDA-PALIAA 447 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + G +++K SN +++ L Sbjct: 448 LQKNKPCGKTILIKGSNGIKLNTVVDYL 475 >gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M6190] Length = 436 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 8 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 64 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 65 --VDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 122 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ F Sbjct: 123 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFD 182 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 183 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 242 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 243 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 298 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 299 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 349 Query: 380 EMGE 383 E+GE Sbjct: 350 ELGE 353 >gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] Length = 452 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL +A A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +G R + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKG---RLNVKVGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis WUE 2594] Length = 452 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 178/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL +A A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis Bt4] Length = 468 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 112/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S G ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ A ++ A G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ GI + + G ++ DF L + Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALHGLGRD 253 Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + S + + ++V + +G H A+N L + L Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPLAAVKAGLE 313 Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F P +GR + AL T+ID++YNANP SM+AAI VL+ S R+ V+G+ Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369 Query: 378 MCEMGELSQSFHIDL 392 M E+G+ +FH ++ Sbjct: 370 MGEVGDEGPAFHREI 384 >gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] Length = 456 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 114/360 (31%), Positives = 176/360 (48%), Gaps = 16/360 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P F A++G +DG+ ++ A +KGA + + A PV VD Sbjct: 29 VSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIAL------AERPCPGWPVVLVD 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL LA A R R ++ +TGSVGKT+TKEM+ LS +T G+ NN IG+ Sbjct: 83 DAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEGNLNNLIGM 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+++ + + +FE+GMS GEI L+ + P I VIT I +H+ E I A Sbjct: 143 PMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVITNIGVSHIEMLGSQENILKA 202 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI +G+ G + LN DD ++ + I + G + A+ + + +E Sbjct: 203 KLEILDGMRPGGKLILNGDDPLLAGVQTDKAEVITYGIENTGCAYTAE----EVESGAEG 258 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++ G S+ G H N L + +L + DT + P R K Sbjct: 259 TAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGMEPDTIAAGFLQYAPTGYRQKI 318 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R G T +++ YNA+P SM++A VL + GRR+AVL DM E+G+ + H Sbjct: 319 ERV----GGVTFVEDCYNASPDSMRSAFDVLRTVQKT--GRRLAVLADMLELGDTAPDAH 372 >gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M01-240355] Length = 436 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 178/365 (48%), Gaps = 25/365 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIP 84 V+ I DSR + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 7 LVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK-- 64 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIG 141 VDD L AL LA A R + ITGS GKTT KEML L A G Sbjct: 65 ---VDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAG 121 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NF 200 ++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ + AH+ F Sbjct: 122 NFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNVLRAHVGCGF 181 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 182 DGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIV 241 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K C ++ + VV G H N + ++ + L F Sbjct: 242 LKPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGF 297 Query: 321 HPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 298 SNIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDM 348 Query: 379 CEMGE 383 E+GE Sbjct: 349 GELGE 353 >gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis V9] Length = 496 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 182/378 (48%), Gaps = 34/378 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR + F AI G H DGHDF+ A ++GA +V ++ A I + +P D Sbjct: 36 DSRQVVDGALFVAIAGEHVDGHDFVDAAARQGAAAALVEREIKSAPIAQIVVP-----DT 90 Query: 92 LGALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + AL LA A KA TII ITGSVGKTTTK++L LS+ +T A GS+NN Sbjct: 91 VAALGALAKANLEARKAIDEPFTIIGITGSVGKTTTKDLLHALLSTQGETVAPKGSFNNE 150 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT ++ + + E+G +H+GEI LT + P IAV+ + AHL F +E I Sbjct: 151 IGLPLTALKVGERTRYLVAEMGANHIGEIARLTKIAPPDIAVVLKVGVAHLGEFGSVERI 210 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK+EI G LN DD E + A S + ++ FG K + + Sbjct: 211 AQAKSEIVRGEAPNAITVLNADD---ERVAAMS-GIAKGDVFWFGIDKAQAHDIDGYMAA 266 Query: 267 SEQSWME--------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + V QG V G H N L + +L ++ + L+ Sbjct: 267 DDIALDDLGHPVFELVSSQGVEQRVSLGIGGRHNVMNALAAASVAKLLGMPLERIAQVLA 326 Query: 319 VFHPKEGRGKRYRCALNQ-----GFFTLIDESYNANPASMKAAISVLSQISPHGEGR--R 371 R +R A+++ FTLID+S+NANP SM+A I L + + R Sbjct: 327 DTR----RISPHRMAVSEVERDGARFTLIDDSFNANPDSMRAGIDGLMAWRSQEDQQPYR 382 Query: 372 IAVLGDMCEMGELSQSFH 389 +AVLG M E+G + H Sbjct: 383 VAVLGSMLELGSDEHNLH 400 >gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis alpha710] gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis OX99.30304] Length = 452 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 178/362 (49%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL +A A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A+I AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALINNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] Length = 453 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 209/458 (45%), Gaps = 44/458 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ++ D+R I P F A+KG +D HDF A+ GAG ++V+ + L P Sbjct: 24 INEVTTDTRQITPGCLFVALKGERFDAHDFAADALAAGAGALLVSKRL-----PLGAPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R + A ++A+TGS GKT+ KEM L + G++NN Sbjct: 79 VVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGEVLYTAGNFNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ DF + ELG +H+GEI + T L RP A++ +A AHL F + + Sbjct: 139 IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 A AK EIF GL G +N D++ + + + L KT++ F + DF Sbjct: 199 AQAKGEIFAGLPADGVAIINADNNDWPHWQTQ---LVGKTVWRFSPQATDGVDFFAS--- 252 Query: 265 QCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTA 313 E+ + GK + H G H N L + + + A ++ Sbjct: 253 --------EISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAAALATSVGASLEAV 304 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 L GR + L G L+D+SYNAN SM AA VL+++ G R+ Sbjct: 305 RVGLGQLQAVPGR--LFPIQLKPGQL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVL 357 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 V GDM E+G+ ++ H + E L I V G L A + H + Sbjct: 358 VAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGSLSQLLSAASGQGEHFQDKAAVIAR 417 Query: 434 F--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 L + +++ V++K S S +++ L E+ P Sbjct: 418 VAELLTEHTVI---TVLIKGSRSAAMEQVVRALQEKAP 452 >gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] Length = 466 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 207/452 (45%), Gaps = 29/452 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR++ P + F A+KG +D HDFI V +GA V+V+ D+ A + ++ P Sbjct: 32 VHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVSRDVDAGVPAIVAP----- 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL +L R + +A+TGS GKTT KEM+ ++ + A G+ NN Sbjct: 87 DTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRLATGGNLNND 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ + ELGM+H GE +L + +P +AV+T H +E + Sbjct: 147 IGLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTVAVVTNAQREHQEFMVSVEAV 206 Query: 207 ASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 A A L G +F ++S + A G + + SFG + AD Q Sbjct: 207 AHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAAGTRRVLSFGTAGEADVQATVALV 266 Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 Q M+V+ G + E VH G +G H +N L V + L+ F + Sbjct: 267 DGVQV-MQVRAPGHAFE-VHLGLLGTHNVRNALAATACALAAGVQVPAIQQGLAAFKAVK 324 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G R + G +ID++YNANP SM+AAI VL+ + R+ V+GDM E+G+ Sbjct: 325 G---RLQVKHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP----RLLVIGDMGEVGDQ 377 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMD---GLFLFIQ 438 +FH ++ I +W +G H + A R H+ D L Sbjct: 378 GPAFHTEIGGYAQALGIEALWATGELATHAVQAFGAQGR----HFERAADLARALEEDAG 433 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ V+VK S R++ L+ + PA Sbjct: 434 GTVAKAGAVLVKGSRFMRMERMVAALVADTPA 465 >gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] Length = 478 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 117/424 (27%), Positives = 187/424 (44%), Gaps = 38/424 (8%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP++T H+ I G ++ +S DSRS P + F AIKG +D HDF+ Sbjct: 6 NPMFTLHEAAALIPGATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVA 65 Query: 62 QKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + V+ +VA + ++P+ V D L LA R + ++A+TGS Sbjct: 66 ARN-----VSAALVARVPDGWDVSAVPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSN 120 Query: 118 GKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTT KEM+ A + A +G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 121 GKTTVKEMIASIFAAAVGANERLATVGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGE 180 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 L + P +A++ H + +E +A A + L G +D++ + Sbjct: 181 TSLLAKIAEPTVALVNNAQREHQEFMATVEAVALEHASVIHALNPEGVAVFPANDAYASI 240 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--------EQSWMEVQLQGKSMEVVHH 286 + A G + + DF L ++ + + + ++ + EV Sbjct: 241 WRVA--ATGNRIV---------DFALNTAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQ 289 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDES 345 +G H A N L +D + L F +GR + + T+ID++ Sbjct: 290 VLGDHNAHNALAATSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDT 349 Query: 346 YNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 YNANP SM+AAI VL S SP R+ V+GDM E+G+ FH ++ I + Sbjct: 350 YNANPDSMRAAIDVLASHASP-----RVLVMGDMGEVGDHGPEFHREIGAYAKERGIDAL 404 Query: 405 WLSG 408 + G Sbjct: 405 YAMG 408 >gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] Length = 468 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 321 RLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 376 EGPAFHREI 384 >gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11A3] Length = 457 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 222/483 (45%), Gaps = 53/483 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L +++L I+ S G + F+N ISIDSR++ + F AI+G ++DGH F+ + + Sbjct: 5 LSELNNVLGDIKNLSEG--KRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG VV+ M + S + P + V+D L A KLA+ R + IIAITGSVGKTT Sbjct: 63 DKGVQSVVIKKGMQRLLPS-NFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTT 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ L+ + + ++NN IGV LT+ ++ + E+GM LG+I L+ Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIEDKALVLEMGMRGLGQIENLSKY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLK 236 P IAVIT I AH+ + I AK EI + L G + + +D F E+ K Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKYLNPEGVVIIPANDPFLEKTLKEVWK 241 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCS------EQSWMEVQLQGKSMEVVHHGIGY 290 + + I I + S + LR + S E++ E+ L+ G+ Sbjct: 242 GRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFEISLE-----------GF 290 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H A N L + L D + K F GR K + T+ DESYNA+P Sbjct: 291 HNASNFLFAYAVAKELGIDFASFNKF--DFAILGGRNKILKSVKT----TIYDESYNASP 344 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 S+KA I L + P + + G M E+GE S+ +H E+ +L N S + F Sbjct: 345 ESVKACIKNLLE-KPRN---KFFIFGSMQELGEQSEKYH---KEIFNLINNSDIEKCVF- 396 Query: 411 VLALKDALPRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLI 461 + D + +Y + + I S GD V++K S ++I Sbjct: 397 ---ICDKKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSVLIKGSRFWQLEKII 453 Query: 462 NLL 464 L+ Sbjct: 454 ELI 456 >gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter irgensii 23-P] gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter irgensii 23-P] Length = 418 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 129/434 (29%), Positives = 206/434 (47%), Gaps = 37/434 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+RSI FFA+KG +++G+ F A+ +GA L +++ D G +I V D+VL Sbjct: 19 DTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIID-DAAYFTGPKTILV---DNVL 74 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 L LA R + K ++A+TGS GKTTTKE+++ LS +T A G+ NNHIGVPLT Sbjct: 75 ETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHIGVPLT 134 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L M + GI E+G +H EI FL L P IT AHL F G+E + K+E Sbjct: 135 LLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGKAHLEGFGGMEGVVMGKSE 194 Query: 213 IFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 ++ L T F+N D+ K I +Y F +S F+ S + Sbjct: 195 LYTFLHTHQKTAFINPKDAL-----QKEKTTDIAHVY-FPES--ITFK-------SAAPF 239 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGKRY 330 ++V + ++ G + + +G+ I ++ TAI S + P R + Sbjct: 240 VKVAFEDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIKTAI---SEYVPSNNRSQII 296 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 A NQ L+ ++YNANP+SMKAA+S + + + +LGDM E+G + H Sbjct: 297 HTANNQ----LLLDAYNANPSSMKAAVSNFANLKA---AFKTVILGDMFELGTTAAEEHQ 349 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 ++ + + + G P+ +T + L + + + + +++K Sbjct: 350 EMVDFTDACCFENTYYVGALFSGTTTKNPQ------FKTFEALEKHLHAQPLRKNSILIK 403 Query: 451 SSNSCGFYRLINLL 464 S RL+N+L Sbjct: 404 GSRGMRLERLLNVL 417 >gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] Length = 480 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 144/484 (29%), Positives = 222/484 (45%), Gaps = 36/484 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D L+ I G G ++ DSR I + F A+ G H DGH F+ ++G + Sbjct: 4 DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 63 Query: 69 VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109 VV N D + +G L + VDD AL K+A A +LRS+A Sbjct: 64 VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 121 Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D ++ + E+G Sbjct: 122 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG LN D Sbjct: 182 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E + ++ G +S K+ K S S+ GK+ +V I Sbjct: 242 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L A + T A ++ H R LID++YNA Sbjct: 299 GAHHVSNALAA--AAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDAYNA 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I L G Sbjct: 357 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 412 Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +A L S H E T+D +Q + D++++K S+ ++L Sbjct: 413 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 472 Query: 464 LLEE 467 + E Sbjct: 473 IEER 476 >gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] Length = 437 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 182/392 (46%), Gaps = 33/392 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+QKG VV+ A + VD Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKADDGRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ LS + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK------ 262 K E+++ L+ G +FLN +S +L++ + I ++G+ + AD Q Sbjct: 194 KGELYDFLKAHDGLLFLN--ESNVDLMEMAAQR-EFSRIITYGQDETADVQGNVVSCAPF 250 Query: 263 ----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 W+ S Q + EV H IG + NML + I AL Sbjct: 251 LKFIWQALSHQP------SSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALE 304 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLG 376 + P R + A N+ LI ++YNANP+SM AAI L Q+ ++A+LG Sbjct: 305 NYIPHNNRSQLTETAHNR----LIVDAYNANPSSMAAAIENFRLMQVKD-----KMAILG 355 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 DM E+G S H + ++L I +VWL G Sbjct: 356 DMRELGTASGEEHQKVIDLLKNTGIDNVWLVG 387 >gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei NCTC 13177] gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] Length = 468 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 376 EGPAFHREI 384 >gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] Length = 468 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 376 EGPAFHREI 384 >gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 26/375 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V + A LS+P Sbjct: 23 MIDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVGRLLPA----LSVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YAC 139 V++ AL ++A A R +AT ++A+TGS GKT+ K +L L + YA Sbjct: 79 VVVENAELALARVA-AGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYAT 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D DF I+E+G G+I +LT + +PH+A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + + + + I +G +AD Sbjct: 198 LGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLHISAD 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + Q + V QG++ +V H N L G+ L A + + A Sbjct: 258 ITARQLQLQAGAAQFTLVTPQGEA-QVALPLPARHNVLNALAATGLA--LGAGIALPVIA 314 Query: 317 --LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L+ HP GR + L G LID+SYNANP S+ AAI L+ G+G V Sbjct: 315 AGLAQAHPVAGR--QIAQTLPSGAV-LIDDSYNANPGSLDAAIDALAAAP--GDG--WLV 367 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G + H Sbjct: 368 LGDMRELGAEGVALH 382 >gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] Length = 492 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 209/449 (46%), Gaps = 28/449 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + IDSR + P F A+ G DGHDF AV GA V+ + +P Sbjct: 27 VTSVVIDSRQVGPGALFVALPGERVDGHDFAAGAVAAGAVAVLGARET-------GVPTV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL LA R + AT++ +TGS GKTTTK++L L + T A +GS+NN Sbjct: 80 -VADPAAALAALAAHLRDLAPATVVGVTGSAGKTTTKDLLADLLGRLGPTVAAVGSFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205 IG+PLTL R D F + E+G +G I L + RPH+ ++ + AH+ ++ G Sbjct: 139 IGLPLTLLRTEPDTAFVVLEMGARGIGHIATLCAVARPHVGLVLNVGSAHVGEYADGRNG 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA+AK E+ E TG + LN DD + ++ A + +FG++ AD + + + Sbjct: 199 IAAAKGELAE--AATGLVVLNADDPLVAAMAGRAGA----QVVTFGRAAAADVRAERVEV 252 Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + L G + G +G H N L + + L A AL P+ Sbjct: 253 GGDGRAAFDLLAGGERHRLRLGLVGAHQVANALAAAAVATSLGLAPAEAAAALEEARPR- 311 Query: 325 GRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R+R + ++++SYNANP SM+AA++ L + G GR AVLG M E+G Sbjct: 312 ---SRWRMEVTTTPDGVVVLNDSYNANPESMRAALTALMDM--RGAGRAWAVLGPMGELG 366 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQ 438 + + H L + + +S + G + A + + +D + Sbjct: 367 ADADAAHDTLGRLAAGLGVSRLVAVGAGARRVHQAAEHEGAWAGESTWVPGVDEAVALLA 426 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + GDVV+VK+S S G R+ L + Sbjct: 427 AQVRPGDVVLVKASRSFGLERVATGLTAD 455 >gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 463 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 16/467 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + H ++ +G I + VN IS D+R + + F + G +DGH FIL A+++GA Sbjct: 5 SIHKIITVCKGKMILEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGA 64 Query: 66 GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V +G L+ V V+D L AL ++ R S I +TGS GKTTTK+ Sbjct: 65 IGALVQKGQEFPLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + G+ NN IG+PLTL + + G+ E+GM+ LGEI L V+P Sbjct: 125 MIAGILETNFNVLKNEGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLAKTVQP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 HIAVIT + +H+ + E I +AK EI L + + +N DD F + +K +S I Sbjct: 185 HIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEESKTYRI 244 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T FG + D E + +V +Q K G H N L+ L V Sbjct: 245 IT---FGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALW-V 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AI+ F E R + G +I+++YNA+P SMKAAI+VL+Q Sbjct: 301 GLHYQMTPLAIQ--KGFDRLELSKMRLEI-VTYGDVKVINDAYNASPDSMKAAITVLNQS 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSI 422 + R+IA+LGD+ EMG ++ H + ++ + ++ G + ++A+ + Sbjct: 358 TGI---RKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITVGKSAQWIAREAVEQGF 414 Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H++ + + D +++ L DVV+VK S ++N + E Sbjct: 415 SQAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVNFIQE 461 >gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] Length = 455 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 121/364 (33%), Positives = 179/364 (49%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALKGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SM+AAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMRAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 483 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 145/484 (29%), Positives = 224/484 (46%), Gaps = 36/484 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D L+ I G G ++ DSR I + F A+ G H DGH F+ ++G + Sbjct: 7 DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66 Query: 69 VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109 VV N D + +G L + VDD AL K+A A +LRS+A Sbjct: 67 VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 124 Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D ++ + E+G Sbjct: 125 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG LN D Sbjct: 185 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E + ++ G +S K+ K S S+ GK+ +V I Sbjct: 245 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L I + AL P + + + L G LID++YNA Sbjct: 302 GAHHVSNALAAAAIAHVAGMATHEIAAALHHATP-QSEHRMHLVHLADG-VDLIDDAYNA 359 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I L G Sbjct: 360 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 415 Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +A L S H E T+D +Q + D++++K S+ ++L Sbjct: 416 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 475 Query: 464 LLEE 467 + E Sbjct: 476 IEER 479 >gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] Length = 464 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 134/471 (28%), Positives = 211/471 (44%), Gaps = 42/471 (8%) Query: 5 WTFHDLLQAIQGH----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + ++ +A+ G + G VP +++DSR++AP + F A+ G DGHDF+ A Sbjct: 4 MSLAEVAEAVGGRLTPDAAGTVP----GKVTVDSRAVAPGDLFVAVPGERVDGHDFLTAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---SKATIIAITGSV 117 + + ++P VD+ + AL +LA A R I ITGS Sbjct: 60 AAA------GAVAALTTRPDGALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSS 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L++ T + GSYNN IG+PLT+ D F + E+G G I Sbjct: 114 GKTSTKDLLGQVLATAGATVSPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHIAR 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP + V+ + AHL F + IA AK E+ E L GT LN DD + Sbjct: 174 LCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGMAP 233 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ A + + G+S AD + + ++ + G+ V +G H N Sbjct: 234 RTRA----RVVTTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMK 354 L G D ALS P+ R+R + + T+++++YNANP SM+ Sbjct: 290 LSAAGAALAAGMAPDAVAAALSAAEPR----SRWRMEVTRRDDGVTVVNDAYNANPESMR 345 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AA++ L+ + RR+AVLG M E+G + H L + V G + + Sbjct: 346 AALAALAGLPAR---RRVAVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGI 402 Query: 415 KDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCGF 457 D ++ E + + + LV GDVV+VK+S S G Sbjct: 403 ADG---ALAAGAREGEGAVRVPDRAAARELLTEVLVPGDVVLVKASRSYGL 450 >gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] Length = 457 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 18 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 74 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 133 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 134 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 194 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 251 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 309 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 310 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 364 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 365 EGPAFHREI 373 >gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] Length = 483 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 144/484 (29%), Positives = 222/484 (45%), Gaps = 36/484 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D L+ I G G ++ DSR I + F A+ G H DGH F+ ++G + Sbjct: 7 DALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKVA 66 Query: 69 VV--NTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT------- 109 VV N D + +G L + VDD AL K+A A +LRS+A Sbjct: 67 VVTKNRDEILAQDWATEEELGKLIL--LQVDDAQIALGKIAQAHLEQLRSRARNGSGKLK 124 Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D ++ + E+G Sbjct: 125 LVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVLEMG 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG LN D Sbjct: 185 ASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAILNAD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E + ++ G +S K+ K S S+ GK+ +V I Sbjct: 245 DPRVEAMSGRT--AGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPAGKA-QVEMQLI 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L A + T A ++ H R LID++YNA Sbjct: 302 GAHHVSNALAA--AAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDAYNA 359 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I L G Sbjct: 360 NPDSVKAALDVLSKYA--ASRRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIP--VLIG 415 Query: 409 FHVLALKDALPRSIHVHYSE---TMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 +A L S H E T+D +Q + D++++K S+ ++L Sbjct: 416 VGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQS 475 Query: 464 LLEE 467 + E Sbjct: 476 IEER 479 >gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, putative [Chlamydophila psittaci 6BC] Length = 436 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 215/444 (48%), Gaps = 31/444 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 14 ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 71 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 72 VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 131 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204 + VPL+L D DF I E+G+S ++ L +V P +AVIT IA H+ NF G++ Sbjct: 132 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 191 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA K+ I L + L D ++ +S + K ++F + ADF +K Sbjct: 192 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVS-AEKFSFAF-YDETADFY---YK 243 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + S + +G V Y A N+L++L + +L VD I + Sbjct: 244 AIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLP 301 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+ ++ G +I+++YNA P +M AA+ + +P G+ I +LG M E+G Sbjct: 302 P---MRFEQSVRNG-IQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 355 Query: 384 LSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 S+ H +A + LS ++ I WL H+L + V + + G+ ++ Sbjct: 356 HSEEGHTVVANKALSKASIIFFIGEKWLPIRHLLKHD-----TCEVSFYPSAQGIEEILK 410 Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462 + GD+V++K S S L++ Sbjct: 411 KVVQQGDIVLLKGSRSLALESLLS 434 >gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 432 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 129/431 (29%), Positives = 205/431 (47%), Gaps = 32/431 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A+++G+ +V+ A G+ + VD Sbjct: 16 VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAGNTHYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L KLA R + II ITG+ GKTTTKE++ LS G+ NNHIGV Sbjct: 74 NCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + E+G SH G+IR L + P +IT + AHL F + + Sbjct: 134 PLTLLRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNVGKAHLEGFGSFDGVIKT 193 Query: 210 KAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L + G TIF+++D+ + + + + + T +Y G+ + N+ + KW Sbjct: 194 KGELYDYLRRRGDSTIFIDHDNPYLKEIAWGLNMIPYGTEDELYVNGRITGNSPYLTFKW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K E EVQ Q IG + N+L + I + KAL+ + P+ Sbjct: 254 KAGKEGERHEVQTQ---------LIGEYNFPNVLAAVTIGRFFGVEPAKIDKALAEYVPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + A N LI ++YNANP SM AAIS + ++ +LGDM E+G+ Sbjct: 305 NNRSQLKKTADN----ILIVDAYNANPTSMMAAISNFRNMQAE---NKMLILGDMRELGK 357 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLV 442 S H + + L +V L G A + H + + L +Q Sbjct: 358 DSAEEHQKIVDYLEKCGFGNVILVGEQFAATR-------HGYLTCPNASALIEALQKDRP 410 Query: 443 DGDVVVVKSSN 453 G +++K SN Sbjct: 411 AGKTILIKGSN 421 >gi|254303960|ref|ZP_04971318.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324152|gb|EDK89402.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 608 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 116/404 (28%), Positives = 196/404 (48%), Gaps = 38/404 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KG LV+ NTD+ + Sbjct: 199 IKNVVMDSRKVIEGSLFFAIN----NGNSYVKDVLDKGVSLVIADNTDVKDE------RI 248 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YNN Sbjct: 249 LKVSNTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSAKAKTLKTEGNYNN 308 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDN 368 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E + K T F+ DD + L + G + N + ++ ++ Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDEYLAKL----------DVNRIGFNDNNNHKIESYEF 417 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHP 322 + S + L GK ++ +G H N + + + V + ++ + +K + + + Sbjct: 418 SDKGS--KFILDGKEYKI--SLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNM 473 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R++ + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+G Sbjct: 474 ------RFQ-EIKIGEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELG 524 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 E +HID+ L I ++L G + D +S Y Sbjct: 525 ENEVDYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKSKSEEY 568 >gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci RD1] gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] Length = 448 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 215/444 (48%), Gaps = 31/444 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 26 ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 84 VVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204 + VPL+L D DF I E+G+S ++ L +V P +AVIT IA H+ NF G++ Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQ 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA K+ I L + L D ++ +S + K ++F + ADF +K Sbjct: 204 GIAEEKSHI---LRNSRVQLLPKDSPWYSYFMKQSVS-AEKFSFAF-YDETADFY---YK 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + S + +G V Y A N+L++L + +L VD I + Sbjct: 256 AIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLP 313 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+ ++ G +I+++YNA P +M AA+ + +P G+ I +LG M E+G Sbjct: 314 P---MRFEQSVRNG-IQIINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 367 Query: 384 LSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 S+ H +A + LS ++ I WL H+L + V + + G+ ++ Sbjct: 368 HSEEGHTVVANKALSKASIIFFIGEKWLPIRHLLKHD-----TCEVSFYPSAQGIEEILK 422 Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462 + GD+V++K S S L++ Sbjct: 423 KVVQQGDIVLLKGSRSLALESLLS 446 >gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 462 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 28/390 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F ++G DGH+FI A GA V D + L V Sbjct: 26 VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPVAATAGAVATFVAADHLPVTTKLITLV- 83 Query: 87 GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L A+ +LA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F ++ Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258 IA AK EI +GL+ GT N D+ + K G+ TI++ S + Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + + ++W ++ M G + N L L + + KAL+ Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + + ++ + YNANP +MKA I S+ + GR IAVLGDM Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+GE S + H LAE L + V+L G Sbjct: 366 LELGEQSPALHASLAEALDPKEVQVVYLYG 395 >gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. 1501(2011)] Length = 507 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 118/392 (30%), Positives = 191/392 (48%), Gaps = 37/392 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I D+R I + F AI G ++DGH+F+ A++KGA V+V+ I +L++P VD Sbjct: 49 IITDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVS----QPIEALAVPQLKVD 104 Query: 90 DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIK--------KTYACI 140 D A ++A R + +K +IA+TGS GKTT KEML + ++ T Sbjct: 105 DTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQSTTLVTR 164 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN GVP+ L + + + ELG +H+GEI + T +V+P +A I I AHL F Sbjct: 165 GNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTTAMVKPDVACILNIGTAHLGEF 224 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGI-------------K 245 G + IA KAEI++ L ++ T + +DD + + L AK H + K Sbjct: 225 GGRDNIAKTKAEIYQSLTESSTAVVPFDDDYTQQLTAVAKQHTPHVIHYGWQHLQHNSDK 284 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S + + Q + C + + ++ Q +++ G H N L Sbjct: 285 ADSSQPQVYATEVQTTALQSCFKLHF-DLDSQTSVVDITLPMSGEHNVSNALAA--AACA 341 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + A + +G+ R L G +ID++YNANP SM+AA VL+ + Sbjct: 342 YASGIAPEVIAAGLNQATSSKGRLGRQTL--GMHHIIDDTYNANPNSMRAAADVLAAQA- 398 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 G ++ VLGD+ E+G+ S H L + ++ Sbjct: 399 ---GYKVLVLGDIGELGDASSEEHYKLGQAIA 427 >gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R] gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R] Length = 514 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 131/478 (27%), Positives = 207/478 (43%), Gaps = 46/478 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSRS+ P F A+ G DGHDF A++KGA V+ ++ + ++ +P + Sbjct: 31 VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88 Query: 90 D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126 + V+ AL++LA VA + ++AITGS GKT+TK+ + Sbjct: 89 ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L T A GS+NN +G+P T R D + + E+ +G I+ LT + P I Sbjct: 146 ATVLGQDGPTVAPPGSFNNELGLPHTALRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRI 205 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243 A + + AHL F E IA AK EI E L +KTG + LN DD F + ++ A Sbjct: 206 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 265 Query: 244 IKTIYSFGKSKNADFQLRKWK-----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G++ +D+ W ++ + + S V G H N L Sbjct: 266 VWFSTDAGQANKSDY----WATSISLDAVARASFTLNTKDGSWPVALQVFGEHQVANALA 321 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + + L R T+I++SYNANP SM+A I+ Sbjct: 322 AAAIAMEAGVAPELVVAGLEAH--SAASAHRMDVKTRADGVTIINDSYNANPDSMRAGIA 379 Query: 359 VLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLAL 414 L+ S E AVLG M E+G+ + H +L L+ YN+ + G + Sbjct: 380 ALAYTASGRSEATSWAVLGQMGELGDDASEAHAELGAELAKYNVQELVAVGENPNCAALA 439 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 + A + H +D + + DVV+VK+SN+ +R+ L P ++ Sbjct: 440 ESAASLGVSTHVVSDVDAALELLAGHIKRDDVVLVKASNADRLWRVAEALHGMVPGLK 497 >gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] Length = 452 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 177/362 (48%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL LA R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKVWRENVNPFVFGITGSGGKTTVKEMLAAILRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKMATLNLNTRTFGIDSGDVHAENIML 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 613 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 193/382 (50%), Gaps = 30/382 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI +G+ ++ + KGA LV+ + +I + Sbjct: 203 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIAD-----NIDVKDERII 253 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + LA+ R + ++ ITGS GKTTTK+++ LS KT G+YNNH Sbjct: 254 KVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNH 313 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + + Sbjct: 314 IGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNV 373 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ E + K T F+ DD + L K + +G ++ K ++ F + K Sbjct: 374 FKAKTELLEFVIKENT-FVCGDDEY--LAKLDVNKIGFNNSNTY-KIESYKFSDKGSKFV 429 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + E+ L GK + + I +A+ + +T +++ +K + + + Sbjct: 430 LDGKEYEMSLLGKH-NISNTAIAIELAKKIGLT-------DEEIENGLKEIKISNM---- 477 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R++ + G I+++YNA+P SMKAAI L++I + + ++A+LGDM E+G+ Sbjct: 478 --RFQ-EIKIGEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKVAILGDMLELGDNEI 532 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 +HID+ L I ++L G Sbjct: 533 DYHIDVLNYLLDKKIKLIYLYG 554 >gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella tannerae ATCC 51259] gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella tannerae ATCC 51259] Length = 430 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 28/439 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R P FFA++G ++G+ F A+ G L VV+ V L + VD Sbjct: 16 ITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALAVVDDPSVVDDDRLIL----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + +I ITG+ GKTTTKE+++ LS G++NNHIGV Sbjct: 72 DVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGNFNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + E G +H GEI+ L+ +V P +IT + AHL+ F E + Sbjct: 132 PKTLLRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIRT 191 Query: 210 KAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L +F+N D+ + L+ +H L T GK + + ++ C Sbjct: 192 KGELYDYLRTKSDAFVFINADNPY---LQPIAHDLLRITYGRPGKDYDVEGEVLTCDPCL 248 Query: 268 EQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + +++G + EV IG + N+L + + + +A++ + P R Sbjct: 249 N---LRFRIKGGAWQEVKTQLIGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYCPTNNR 305 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELS 385 + R A N TLI ++YNANP SM AA+ I PH ++A+LG M E+G S Sbjct: 306 SELLRTATN----TLIVDAYNANPTSMAAALDNFQLIKHPH----KMAILGGMRELGNAS 357 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + + ++ + +WL G ++ P + Y +++ + ++ + Sbjct: 358 AQEHQAIIDKVATMALDDIWLVG------EEFQPFAERYRYFPSVEAVEQQLREHPLHDS 411 Query: 446 VVVVKSSNSCGFYRLINLL 464 ++++K SNS YRL + L Sbjct: 412 LILIKGSNSQHLYRLPDYL 430 >gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 463 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 133/445 (29%), Positives = 211/445 (47%), Gaps = 40/445 (8%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ V G + DSR I P F A G H DGHDF AV GA +V+ ++ A Sbjct: 23 PETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAAAAVADGAVAALVSREVDA----- 77 Query: 82 SIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 P VDDV A KLA A R + II +TGS GKT+TK+++ ++ T A Sbjct: 78 --PSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSAGKTSTKDVMAELCRALGPTVAPE 135 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN IG+P T+ ++ + + E +G I +L + P IAV+ + AH+ F Sbjct: 136 GTLNNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDYLCGIAPPGIAVVINVGTAHMGEF 195 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++ IA AK E+ E + G + LN DD+ ++ ++ + +FG++++AD + Sbjct: 196 GTVDGIARAKGELAEAVAPGGVVILNADDARVAAMRDRA----RARVVTFGEAESADIRA 251 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT------LG-----IVSILTAD 309 + Q + S V G H N L LG I S+++ Sbjct: 252 TDVVSEAGQPRFTLHTPNGSAPVALKLYGAHHVSNTLAAAAVAVELGMAAEAIASVVSGP 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + + + VF +G T+ID+SYNANP+SM AAI+ L+ + E Sbjct: 312 LSLSPRRMDVFTRADG-------------TTVIDDSYNANPSSMAAAINALADLGK--ES 356 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R+IAVLG M E+G+ +++ H+ + E+ + +I V A+ + + + Y Sbjct: 357 RKIAVLGYMAELGDETEAAHLQVGELAARNDIDIVISVEEVAAAIAEGAGLAGSIAYGVD 416 Query: 430 MDGLFLFIQSSLVD-GDVVVVKSSN 453 + L+D GDVV+VK S Sbjct: 417 DQAEAIAKLDELLDVGDVVLVKGSR 441 >gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides thetaiotaomicron VPI-5482] gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 432 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 127/442 (28%), Positives = 212/442 (47%), Gaps = 32/442 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ + P +IT + AHL F E + Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K T+F+++D+++ + + + T +Y G+ + N+ + +W Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLMNIAEGLNLIPYGTEDDLYVNGRITGNSPYLTFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + GKS +V IG + N L + I + +AL+ + P+ Sbjct: 254 KAGKD---------GKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382 R + + N TLI ++YNANP SM AA+ + PH ++ +LGDM E+G Sbjct: 305 NNRSQLKKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVPH----KMLILGDMRELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S + H +A+ L VWL G A + + +V E + L ++ Sbjct: 357 AESAAEHQKIADYLKECAFEKVWLVGDQFAAAEHSFQTYPNVQ--EVIKEL----EADKP 410 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 G +++K SN +++ L Sbjct: 411 KGYTILIKGSNGIKLSSVVDYL 432 >gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] Length = 466 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/380 (31%), Positives = 180/380 (47%), Gaps = 17/380 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSRS+ P + F A+KG +D HDFI V +GA V+V+ ++ A + ++ P D Sbjct: 35 DSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDAGVPAIVAP-----DTR 89 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGV 149 AL +L R + +A+TGS GKTT KEM+ ++ ++ A G+ NN IG+ Sbjct: 90 IALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEEQRLATGGNLNNDIGL 149 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ R+ + ELGM+H GE +L + +P +AVIT H +E +A Sbjct: 150 PLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVITNAQREHQEFMVSVEAVAHE 209 Query: 210 KAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 A L G D +S +A G + SFG S+ AD Sbjct: 210 HAAAIAALPANGVAVYPLDAESGGAYAPVWRNAAGARRALSFGTSQRADVHATVTLVDGA 269 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q M+V+ G + +V +G H +N L + V + L+ F +G Sbjct: 270 QV-MQVRAPGHAFDVRLALLGEHNVRNALAAIACALAAGVHVPAIQRGLAGFQAVKG--- 325 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R + G +ID++YNANP SM+AAI VL+ + R+ VLGDM E+G+ +F Sbjct: 326 RLQVKYTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP----RVLVLGDMGEVGDQGPAF 381 Query: 389 HIDLAEVLSLYNISHVWLSG 408 H ++ I +W +G Sbjct: 382 HQEIGAYAKARGIGTLWATG 401 >gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D- alanyl-D-alanine ligase [gamma proteobacterium IMCC2047] Length = 376 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/377 (31%), Positives = 182/377 (48%), Gaps = 15/377 (3%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ AL L R K ++A+TGS GKTT KEM L + T A G++NN + Sbjct: 2 VENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGNTLATAGNFNNDL 61 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL R+ + + + ELG S +GEI + LV+P +A+IT A AH+ F + + Sbjct: 62 GAPLTLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAAEAHIEGFGCLNNVV 121 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWK-Q 265 AK EI + L +G +N DD K K+ A + ++S ++ ADF R ++ Q Sbjct: 122 QAKGEILDALPPSGVAVINGDD--LNAYKWKARAGDRRQLVFSLNENSGADFFARSYELQ 179 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + E+ +++V + +G H N L S L A + L P G Sbjct: 180 ANGGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQIKTGLEAVGPVAG 239 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R L+ G +ID+SYNANP S++AAI VLSQ H +I VLGDM E+G+ + Sbjct: 240 R--LTGITLSSG-ARIIDDSYNANPESLRAAIDVLSQCPGH----KILVLGDMAELGDTA 292 Query: 386 QSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H + A I ++ G A ++ P+ H E D L +++ + Sbjct: 293 LHDHQEAARYARNQGIDNLMTVGSLSAHAAREFGPQG---HAFENHDSLIETLRNRINGH 349 Query: 445 DVVVVKSSNSCGFYRLI 461 V+VK S S R++ Sbjct: 350 TTVLVKGSRSAHMERIV 366 >gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] Length = 455 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 176/362 (48%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ + DSR I + FFA+ G +D HDF+ + GA VVV+ D A G+L Sbjct: 24 VSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G +IA AK+EI++GL + G + +D + + S +T +A+ + Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAVVFQTTSQDHQQRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + +D + L F Sbjct: 259 KPLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLDDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++S RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMS----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|225629826|ref|ZP_03787749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591321|gb|EEH12438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 352 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 175/360 (48%), Gaps = 65/360 (18%) Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + I E+GM+ GEI+ L+ + P+IAVIT I PAH NFS + ++A AK EI G++ G Sbjct: 1 YLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNG 60 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS----------- 270 T+ L+ D+ +++ L SHA + + SFGK KNA+ L + E S Sbjct: 61 TLVLSRDNKYYDYLS--SHA--NRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPV 116 Query: 271 ----------------------WMEVQLQGKSMEVVHHGI-------------------G 289 W+ G + V + + G Sbjct: 117 LDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQG 176 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A ++L +V L D+ AL F +GRG ++ N+ + LID+SYNA+ Sbjct: 177 EHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKYNKKYIHLIDDSYNAS 236 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PASMK AI LS S R+IA+LGDM E+G+ S FH DL ++++ NI V+ G Sbjct: 237 PASMKTAIKTLSTYSNQ---RKIALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGK 293 Query: 410 HVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +L L + LP +I H++++ + L + + + + D ++VK S ++L++ EF Sbjct: 294 FMLELHELLPDNIRGTHFNDS-NQLKSDLANIIQNNDAILVKGSRGMK----MDLIVREF 348 >gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax benzoatilyticus JA2] gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax benzoatilyticus JA2] Length = 448 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 173/382 (45%), Gaps = 17/382 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++ P + F A++G +DGH+F+ A + GA + + ++ L +P Sbjct: 28 VHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGAVAAIAEHGLSDALPGLQVP----- 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHI 147 D L AL +LA R R ++A+TGS GKTT +M+ L + +A G+ NNHI Sbjct: 83 DALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQMVAAILRAAHGDAAFATRGNLNNHI 142 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + G+ ELGM+H GEI L + RP IA++ H + +E +A Sbjct: 143 GVPLTLLGLEPAHAAGVVELGMNHPGEIAELAAIARPTIALVNNAQREHQEFMATVEAVA 202 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L G DD + L + + G + +F AD R Q Sbjct: 203 RENGQAIAMLPPDGVAVFPADDDYTPLWRELA---GARRTITFALDGAADLTARATWQGD 259 Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 W +E+ + G H +N L L+ F P GR Sbjct: 260 R--WRVEMATPAGPLVTTLAVAGRHNVKNALAAAACALAAGVAPAAIAAGLTAFQPVAGR 317 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + R A G TL+D+SYNANP S AA++VL+ + G R VLGDM E+GE Sbjct: 318 SQAARLATAHGEITLVDDSYNANPDSALAAVAVLAALP----GPRWLVLGDMGEVGERGP 373 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 FH ++ I VW +G Sbjct: 374 EFHAEVGAAARAAGIETVWTAG 395 >gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Porphyromonas asaccharolytica DSM 20707] gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Porphyromonas asaccharolytica DSM 20707] Length = 458 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84 +GI D+R + P F +++G H+DG+ F + A+++G +V D ++ I + Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALV--DDLSYIDEVDESDAD 75 Query: 85 -----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++ D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A Sbjct: 76 LRERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHAT 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+YNN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS Sbjct: 136 QGNYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSG 195 Query: 200 FSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---- 254 F E + AK+E++ L E +G F N +D S+ G+ T+Y G + Sbjct: 196 FGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSPRVT 250 Query: 255 -----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + L K + C +++ G+S ++ +G + N+L + + D Sbjct: 251 GAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVGLHFGLD 303 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 T +A++ + P+ R + QG ++D YNANP+SM+ A+S + G Sbjct: 304 PKTINEAVTNYQPRNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALSSYFTMDCQGLN 361 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVH 425 R + +LGDM E+G+ ++S HI + + Y + + + G + AL+ A S H Sbjct: 362 RML-ILGDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFALQ-ARYGSEHFI 419 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + L + +++K SNS Sbjct: 420 FFPSATALKQYFTRHQPQHSFILIKGSNS 448 >gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 465 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 147/477 (30%), Positives = 227/477 (47%), Gaps = 42/477 (8%) Query: 10 LLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + A+ G +G P V G + DSR + + A +G + DGH F+ A+++GA V Sbjct: 8 IADAVSGRLVG--PDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAV 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKE 124 + ++ ++ + V+D AL LA A LRS+ T +IA+TGSVGKTTTK+ Sbjct: 66 IAERELEEAVAQII-----VEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS T A S+NN +G+PLT + + E+G S G I +LT +V P Sbjct: 121 LLLQILSEDGPTVAPKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLTDIVSP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+ + AH+ F G E +A+AKAE+ G G + LN DD E + A G Sbjct: 181 DVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAM--APMATGP 238 Query: 245 KTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +S AD + + + + S+ V +G S V +G H N L Sbjct: 239 IVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRG-SAPVSLALVGRHHVSNALAAAAG 297 Query: 303 VSILTADVDTAIKALS---VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L D+DT LS P R + + TLID+SYNAN SM+A I+ Sbjct: 298 ALTLGMDLDTVAAVLSGARALSPH--RMDVHDLDIEGTALTLIDDSYNANLDSMRAGIAA 355 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SHVWLSGFH 410 L+ I + RIAVLG+M E+GE S+S H + +++ + SH +L G Sbjct: 356 LASIGR--DAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYLEGAS 413 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +A R++ S+ + F + +G VV+VK S +++ ++L E+ Sbjct: 414 GVA-----NRTVASDPSDAARLVARFAE----EGAVVLVKGSYGSQSWQVADILREK 461 >gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] Length = 468 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHTLGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 376 EGPAFHREI 384 >gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 472 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/418 (27%), Positives = 205/418 (49%), Gaps = 16/418 (3%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +F ++++A+ G ++ G P G V G+ DSR++ P F I G +DGHDF + A++ G Sbjct: 4 SFEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEAG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 A ++V+ + ++ +P+ V+D + AL KLA R R + +I +TG+ GKTT K Sbjct: 64 AAALLVSRNPFDAV--PPVPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTVK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L LS T + NN IG+PL++ + F + E G+SH ++ L ++ Sbjct: 122 ELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGEEAFWVMEAGISHPNDMDELGAILE 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+I + P H + G A K+++ L GT ++ D + L ++ A+ Sbjct: 182 PDLALILNVGPGHAAGL-GDRGTAHYKSKLLAHLAPGGTAIISAD---YPDLAREARAVR 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++ + D++ E + + L G S++V G A+N++ + Sbjct: 238 QELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDGVSIDVEAPFRGAFGAENVIAVAAV 297 Query: 303 VSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L + + PK+ R+ C+ G + +ID+SYNANP S + + Sbjct: 298 AHRLGLGAEEIAAGFAGAALPKQ----RFACS-RAGDWLVIDDSYNANPLSFSRMLEAAA 352 Query: 362 QIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +++ H + + VLG+M E+G LS+ H +L +++ V G H+ +D L Sbjct: 353 EMAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRLVADIKPRLVCWKGGHLEEFEDGL 410 >gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W] gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II] Length = 462 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 28/390 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F ++G DGH+FI A GA V D + L V Sbjct: 26 VTGLAFDSRKLKPGMLFVPLRG-ERDGHEFIPAAATAGAVATFVAADHLPVTTKLITLV- 83 Query: 87 GVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L A+ +LA L + ++AITGS GKTTTK+M L++ +YNN Sbjct: 84 -VPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNN 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ F ++ Sbjct: 143 EIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLAEPDVAVITMIGEAHIEFFKTRDK 202 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK----SHALGI---KTIYSFGKSKNADF 258 IA AK EI +GL+ GT N D+ + K G+ TI++ S + Sbjct: 203 IADAKMEITDGLKDDGTFIFNGDEPLLQERAKKITQERETFGLHPENTIFAHSISGH--- 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + + ++W ++ M G + N L L + + KAL+ Sbjct: 260 --RNHTEFTVEAWPDLTFSIPIM-------GEYNVVNALAALLVGRKFHVKPEIMQKALA 310 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R + + + ++ + YNANP +MKA I S+ + GR IAVLGDM Sbjct: 311 HFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEFT--ATGRHIAVLGDM 365 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+GE S + H LAE L + V+L G Sbjct: 366 LELGEQSPALHAGLAEALDPKEVQVVYLYG 395 >gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 424 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 23/376 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I D+RSI P FFA+KG ++G+ F L A++ GA VV+ + +G + V Sbjct: 13 ICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDEN----VGD-DERLIKVS 67 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A+ A+ R I +TGS GKTTTKE+ L + K +A G++NNHIGV Sbjct: 68 DVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFNNHIGV 127 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ P + + I E+G +H EI L + P + IT AHL F G+E I Sbjct: 128 PLTILSAPKETEMLIVEMGANHQKEIGQLASIAEPTLGYITNYGKAHLEGFGGVEGIIKG 187 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ + + G +N DD+ ++ + A +T +FGK+ NA F ++ Sbjct: 188 KSELYDYIAQNEEGVALVNADDA----IQLEKSAACRRT--TFGKT-NAQFTYTV-EEKD 239 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + ++ + S + + G N+ + + ++AL+ + P R Sbjct: 240 EFAGIQFSIATASYTIQSNLSGSFNCTNLAAAVALGRYCDVPAPAIVQALTDYLPAMNRV 299 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + NQ L+D +YNANP SM +I ++ G VLGDM E+GE S + Sbjct: 300 EWRKTPSNQ---VLLD-AYNANPTSMSLSIENFAKWHKDG----WLVLGDMFELGEESAA 351 Query: 388 FHIDLAEVLSLYNISH 403 H + +++ N+ Sbjct: 352 EHRAIVKLVQRINMEE 367 >gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium gallicum DSM 20093] gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium gallicum DSM 20093] Length = 535 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 187/394 (47%), Gaps = 57/394 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR F AI G H DGH ++ GA +V+ ++ S S+ VD Sbjct: 45 VVIDSRQAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIPQS----SVVQLVVD 100 Query: 90 DVLGALNKLA---VAARLRSKA--------TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 D + AL +LA +A R A +I+ ITGSVGKTTTK++L L + +T A Sbjct: 101 DTVKALGELARHNLAQRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETVA 160 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +GS+NN +G+PLT ++ F I E+G +HLGEI LTH+ P +AV+ + AHL Sbjct: 161 PVGSFNNELGLPLTALQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLKVGNAHLG 220 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSK 254 F +E IA AK+EI G G LN DD + A + L G++ Sbjct: 221 EFGSVERIAQAKSEIVRGEVPGGMTILNADDPHVAAMDAIAPGLVRWFGLEHATEHDDYV 280 Query: 255 NAD-----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 AD F LR+ S+ ++ +V+L GI G H N L + Sbjct: 281 TADHVRMDDDGHAVFTLRQ----SDGAYQQVRL----------GIPGAHNVMNALAATAV 326 Query: 303 VSILTADVDTAIKALSVFHPKEGRG-KRYRCALN------QGFFTLIDESYNANPASMKA 355 + ++ L ++ R +R A++ + FTLID+S+NANP SM+A Sbjct: 327 AQYFGLPLRHIVQVL-----EQVRAISPHRMAISIVRRPERPEFTLIDDSFNANPDSMRA 381 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 I ++ + RIAVLG M E+G + H Sbjct: 382 GIDGIAAFNAAEPMLRIAVLGAMLELGPDETALH 415 >gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] Length = 468 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEG 325 + S + + G ++V + +G H A+N L + AIKA L F P +G Sbjct: 262 LDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL-AAIKAGLEAFAPVKG 320 Query: 326 RGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 R + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 321 RLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGD 375 Query: 384 LSQSFHIDL 392 +FH ++ Sbjct: 376 EGPAFHREI 384 >gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum ferrodiazotrophum] Length = 467 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 220/478 (46%), Gaps = 41/478 (8%) Query: 9 DLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ ++GH P+G F DSR+I F A++G DGHD + A +G Sbjct: 9 ELLEGVEGHWFSSPPKGELFWINAGTDSRTILSGNVFVALRGLRTDGHDHLEQAAARGTT 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNK---LAVAARLRSKATIIAITGSVGKTTTK 123 L VV I ++IP V+D L AL K L +AA R+ +I++TGSVGKTTT+ Sbjct: 69 LAVVER----GIPGVNIPQIVVEDTLVALRKMGALVLAAHRRAGHRLISLTGSVGKTTTR 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ L ++ G+ NN IGVPLTL P + + E+G+ + G++ L L+ Sbjct: 125 ELIRTGLPP-GASHGSSGNENNEIGVPLTLLSWPPSARWCVLEVGIRNPGDMDILAPLLS 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 ++T +AP HL +E + K+++ G+ + G + + E G Sbjct: 184 ADTGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVVEGGCRIVPEEIRRTE---------G 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++S + L ++ + + + +GK++ + LG Sbjct: 235 RDPLFSDPTRRLLGVSLDRFPEADVSGEL-LSPEGKAVLSLRRPPLRLPLPWPSRALGWC 293 Query: 304 SILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +++ D+ +A + +S++ GR +R + + G L+D YNANPASM Sbjct: 294 ALMALAALAAEGVDLASAAERISLYRGYSGRMERR--SHSSGLLLLLDH-YNANPASMSE 350 Query: 356 AISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A LS+ +G R AVLGDM E+GE SQ FH ++ E ++ ++ VW G + Sbjct: 351 AFEWLSRERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAAMAGVAGVWYRGEQKSSF 410 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDG------DVVVVKSSNSCGFYRLINLLLE 466 + R + +F +S L G D+++VK S ++ LLE Sbjct: 411 VEGFLRGGGKEFQIRDASVF---ESDLKSGRGPGPEDILLVKGSRGMKLEEVVATLLE 465 >gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] Length = 433 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 196/400 (49%), Gaps = 31/400 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A++ G+ VV+ A G + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTGDAHYII--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + II ITG+ GKTTTKE+++ LS G+ NN IGV Sbjct: 74 NCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLNNSIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 134 PLTLLRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKT------IYSFGK-SKNADFQ 259 K E+++ L + TIF++YD+ + L+ ++ L T +Y G+ + N+ + Sbjct: 194 KGELYDYLRRRKEGSTIFIHYDNPY---LREIAYGLNQITYGSEEELYVSGRVTGNSPYL 250 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +WK E GK+ +V IG + N L + I + KAL+ Sbjct: 251 TFEWKAGKE---------GKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKIDKALAE 301 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + P+ R + R A N TLI ++YNANP SM A+IS ++ ++ +LGDM Sbjct: 302 YTPQNNRSQLKRTADN----TLIIDAYNANPTSMMASISNFCKMEA---AHKMLILGDMR 354 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 E+G+ S H + + L + HV L G A + + P Sbjct: 355 ELGKDSAEEHQKIIDYLEECHFEHVMLVGELFAATRHSYP 394 >gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis N1568] Length = 452 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 178/363 (49%), Gaps = 21/363 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIP 84 V+ I DSR + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 23 LVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK-- 80 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIG 141 VDD L AL LA A R + ITGS GKTT KEML L A G Sbjct: 81 ---VDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NF 200 ++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ F Sbjct: 138 NFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGF 197 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 198 DGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIV 257 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K C ++ + VV G H N + ++ + L F Sbjct: 258 LKPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGF 313 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E Sbjct: 314 SNIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366 Query: 381 MGE 383 +GE Sbjct: 367 LGE 369 >gi|33593958|ref|NP_881602.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella pertussis Tohama I] gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella pertussis Tohama I] gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS] Length = 945 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 176/375 (46%), Gaps = 17/375 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV----AHPVADVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TYACIGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + A G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + + G + + FG D + Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLA---GARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + V S + G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++ G LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQ--MSDGTV-LIDDTYNANPDSARAAIDVLARLP----APRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNI 401 + H ++ + + I Sbjct: 856 AMHREVGDYAREHGI 870 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 32/372 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIPVFG 87 + +DSR I P + F A G DG F+ A+ +GA ++ T+ VA G+ ++PV Sbjct: 32 LRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQ 91 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------ 141 + +LGAL R +++AITG+ GKT+ + L L+ + K IG Sbjct: 92 LRTLLGALAD-EWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALL 150 Query: 142 ----SYNNHIGVP--LTLARM---PVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITT 191 S + P LT+ R L S +G E L H +R +A T Sbjct: 151 PDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDH-IRIAVAGFTN 209 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL ++ AKA +F+ + + +N DD E L A A +KT YS Sbjct: 210 LTRDHLDYHGTMQRYEQAKAALFQWPDLQAAV-VNADDPAGERLLASLPA-ALKTGYSL- 266 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + AD R + + + L +++V +G H N+L+ G +S L + Sbjct: 267 QGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGWPLP 326 Query: 312 TAIKALSVFHPKEGRGK-------RYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + L+ P +GR + ++ A QG ++D Y P ++ A++ L ++ Sbjct: 327 QIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVD--YAHTPDALARALTALRPVA 384 Query: 365 PHGEGRRIAVLG 376 GR + V G Sbjct: 385 QARGGRLVCVFG 396 >gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 459 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 207/461 (44%), Gaps = 45/461 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 PQ V G++ DSR ++P + F A++G DGHDF AV+ GA V+ L Sbjct: 22 PQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAAR-------PL 74 Query: 82 SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P VDD L AL A A S+ ++A+TGS GKT+TK+++ L T Sbjct: 75 DVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGATVFTQ 134 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 GS+NN IG+P+T D + E+G G I +LT + P I + + AH F Sbjct: 135 GSFNNEIGLPITALEATADTRHLVVEMGARGQGHIAYLTQITPPRIGAVLNVGTAHAGEF 194 Query: 201 SGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 G E A AK E+ E L + G LN DD+ + A++ A + +FG ++AD Sbjct: 195 GGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAAMSARTKA----RVVTFGVERSAD 250 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH----------HGIGYHMAQNMLMTLGIVSILT 307 + + + QG++ +H +G H N L + Sbjct: 251 VY---------ATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNALAAAAVAEAAG 301 Query: 308 ADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D KAL+ EG R R T+++++YNAN S AA+ L+ + Sbjct: 302 MDAAQIGKALTAAESLSEG---RMRVTERPDGVTVVNDAYNANADSTAAALRALAHLGRE 358 Query: 367 GEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GR IA+LG+M E+G S H LA VL + + V VLA + Sbjct: 359 RAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLVAVGEGDARVLATE--YGPDGR 416 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ G +L + + GDVV+VK SN+ G L + L Sbjct: 417 VEATKAAAGEWLS-RYNFRAGDVVLVKGSNALGLGELADAL 456 >gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] Length = 426 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/367 (29%), Positives = 172/367 (46%), Gaps = 26/367 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R F A+ G ++D HD+I A Q GA ++ N S+ S +P+ V Sbjct: 25 GVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIAN----KSVDS-QLPILVV 79 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D AL+ +A K +IAITGS GKTTTK ML LS T G+ NNH+G Sbjct: 80 NDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNMLANILSLQAPTLKTQGNLNNHLG 139 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP+TL + + + E+G +HLGEI L +V P IA++T AH+ F G + + Sbjct: 140 VPMTLLTLEKQHQYAVIEMGANHLGEISHLRKIVNPDIAIVTNTLDAHIGTFGGFDNLVK 199 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI+ K ++ +S G + G +K + + Sbjct: 200 AKGEIYSKNSK-------------NIINTQSIFTGDVSFTPHGNTKVSGNNGDIFASNIV 246 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++ + + + + + IG H N L V L D++ + L + GR + Sbjct: 247 NNKFDLNIHQQKISITLNLIGIHNIDNALAASACVYPLGIDINLIKQGLEATKAEPGRLE 306 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 ++ F +ID++YNANP S A+ L S G +I VLG M E+G S+ F Sbjct: 307 ----IIHTKQFRIIDDTYNANPYSTIIALKTLQNFS----GEKIIVLGTMEELGNYSKMF 358 Query: 389 HIDLAEV 395 H + ++ Sbjct: 359 HFKIGQL 365 >gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] Length = 478 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 220/459 (47%), Gaps = 37/459 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------ 80 ++G++IDSR++ P F A++G DGH ++ A + GA V+V+ + A + Sbjct: 32 IDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLVDHEKSACVEGGWAAFA 91 Query: 81 --LSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTY 137 + V V+D L AL +L+ R + IA+TGS GKTTTKE+L LS T Sbjct: 92 THSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTGSSGKTTTKELLGSVLSMKAPTV 151 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 G+ N+ IG+PL L + FG+FELG++ +GE+ L+ L P +IT I AH Sbjct: 152 VNPGNLNSEIGLPLALFGVGPADHFGVFELGINRIGEMELLSSLYHPQHLLITNIGTAHS 211 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 G E + K ++ ++ G +F DD + LK++ +L + +G + Sbjct: 212 GPLGGKEGVFREKTKVLAHMQGEGFVFYPEDDDRIDALKSRYPSLAFRP---YGPATLTG 268 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L + + W+ L+ + + + + +G H QN + + L + AL Sbjct: 269 --LETVEDLGTEGWL---LRYRGVSIHYPLLGQHNLQNGCGVIALAFELGVSPELIGAAL 323 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S P G RC L +G +++D+ YNAN S + ++ + +GR++ V G Sbjct: 324 SAAAPVAG-----RCRLLRGAISVLDDCYNANLDSSERVFEYIASLP--WDGRKVIVFGS 376 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHV---HYSE 428 M E+G S H + ++ + V+L G F ++ + ++ + +H + E Sbjct: 377 MKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSESFREISDQGSMSQILHFSENQFDE 436 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L F++ +GD+V++K S + G RLI LL E Sbjct: 437 LSERLLAFVR----EGDLVLLKGSRTMGLERLIPLLQHE 471 >gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 458 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/383 (30%), Positives = 180/383 (46%), Gaps = 17/383 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSRS+ P + F A++G +D HDFI V +GA V+V+ ++ A++ ++ P Sbjct: 24 VHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSREVDAAVPAIVAP----- 78 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL +L R + +A+TGS GKTT KEM+ ++ + A G+ NN Sbjct: 79 DTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRLATGGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ R+ + ELGM+H GE +L + +P +AVIT H +E + Sbjct: 139 IGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVITNAQREHQEFMVSVEAV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 A A L G D +S A G + + SFG ++ AD + Sbjct: 199 AHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAGTRRVLSFGTTQQADVHA-TVEL 257 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 M+V+ G + EV +G H +N L + V L+ F P +G Sbjct: 258 VDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACALAAGVHVPAIQAGLAEFKPVKG 317 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + +ID++YNANP SM+AAI VL+ + R+ VLGDM E+G+ Sbjct: 318 ---RLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFA----APRVLVLGDMGEVGDQG 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 +FH ++ I +W +G Sbjct: 371 PAFHDEIGAYAQARGIEVLWATG 393 >gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] Length = 446 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/457 (27%), Positives = 221/457 (48%), Gaps = 48/457 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G++F A++KG V++ I + V+ Sbjct: 16 VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQKEY-QIQEDERYIL-VE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R II ITG+ GKTTTKE+L L+ + G++NN IGV Sbjct: 74 DCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L + P A+IT + AHL F E + Sbjct: 134 PKTLLCLKPEHEMAVVEMGASHPGDIQSLVTVAEPDYALITNVGRAHLQGFGSFEGVMRT 193 Query: 210 KAEIFEGLEK---TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----- 261 KAE+++ +++ G +F+N D+ + + + ++H +K + + ++ D +R Sbjct: 194 KAELYDYMQQHKPQGLVFINQDNEYLKEM-FRTHCPNVKAM-GYAQTDRPDISIRGEVVS 251 Query: 262 -------KWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +W++ + + W EVQ Q IG + NML + I S Sbjct: 252 CAPYLKFRWRKTAAAPSPREDTRWHEVQTQ---------LIGAYNLDNMLAAITIGSHFG 302 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + AL+ + P R + A N+ LI ++YNANP SM+AA++ ++ Sbjct: 303 VSDEQINHALAGYVPSNNRSQLQITAHNK----LIVDAYNANPTSMEAALTNFQRMDV-- 356 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 +++A+LGDM E+G++S + H + ++++ N+ VWL G L + + Sbjct: 357 -PKKMAILGDMRELGDVSMAEHQKIVDLIATLNLDKVWLVGEEFGRTNTTLRK-----FK 410 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +T + + ++ G +++K SN ++L LL Sbjct: 411 DT-EAVREALRQEPPQGYYILIKGSNGIKLFQLPELL 446 >gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] Length = 455 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 177/364 (48%), Gaps = 25/364 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ G+L Sbjct: 24 VSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAALDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRGNVNPFVFGITGSGGKTTVKEMLAAVLRHRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G +IA AK+EI++GL + G + +D + + S +T +A+ + Sbjct: 199 GTNDIAKAKSEIYQGLGEDGLALIPCEDEHAAMFQTTSQGHQQRTFGVDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + +D + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLILDDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM Sbjct: 315 NIKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMG 365 Query: 380 EMGE 383 E+GE Sbjct: 366 ELGE 369 >gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] Length = 468 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 17/368 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S + + G ++V + +G H A+N L + L F P +GR Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGR 321 Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 322 LQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376 Query: 385 SQSFHIDL 392 +FH ++ Sbjct: 377 GPAFHREI 384 >gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 495 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 186/368 (50%), Gaps = 28/368 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIP 84 ++ + D+R+++ + A++G DGHDF A+ +GA GL+V + +L +P Sbjct: 23 MIDAVGNDTRALSNGSLYVALRGERVDGHDFAADALAQGASGLLVERL-----LPTLGVP 77 Query: 85 VFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YA 138 V + AL ++A A R +AT +IA+TGS GKT+ K +L L+ + YA Sbjct: 78 QVVVQNTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILTEAGRVDGTTVYA 136 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN IG+PL + P D D I+E+G G+I +LT + RP +A++ IAPAHL Sbjct: 137 TPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIARPQVALVNNIAPAHLE 196 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIYSFGKSKNA 256 + +A K I+ L G +N DD+F + + HA + + + +G +A Sbjct: 197 RLGSLLGVAQTKGAIYAALPSDGVAVINADDAFGAWFEQQLHAQPVPGRRVLRYGLQASA 256 Query: 257 DFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 D + R+ + Q + V QG++ +V G H N L G+ L A + I Sbjct: 257 DIRARQLRLQADGAQFTLVTPQGEA-QVTLPLPGRHNVLNALAATGLA--LGAGIALPII 313 Query: 316 A--LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 A L+ P GR +R G L+D+SYNANP S+ AAI L+ G+G Sbjct: 314 AAGLAQARPVAGRQIAHRL---PGGAVLVDDSYNANPGSLDAAIDALAAAP--GDG--WL 366 Query: 374 VLGDMCEM 381 VLGDM E+ Sbjct: 367 VLGDMREL 374 >gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563] Length = 427 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 179/380 (47%), Gaps = 45/380 (11%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ + + +DSR I FFAI+ +G+ ++ A+ KGA LV+ + Sbjct: 15 LPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIAD-----RYSGN 65 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V V++ + + +LA R K +IAITGS GKTTTK+++ LS +T +G Sbjct: 66 HEKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLG 125 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNNHIG+P T+ + +F + E+GMS GEI L + RP +IT I +HL Sbjct: 126 NYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLK 185 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + AK E+ L + G + DD F + + A G + D+++ Sbjct: 186 TRENVFKAKTELLPYLPE-GCFITSGDDVFLKKIPA----------IHVGYDERNDYRIF 234 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL---- 317 +K+ +S QL K E+ G H N M + I + D T + L Sbjct: 235 GYKKKDRRSSF--QLNDKQYEIPLE--GKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIE 290 Query: 318 ---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 F E +G +Y I+++YNA+P SM A+ L + + +IAV Sbjct: 291 LSPMRFERSEYQGTKY-----------INDAYNASPISMGVALDSLVETTAEC---KIAV 336 Query: 375 LGDMCEMGELSQSFHIDLAE 394 LGDM E+GE +FH D+ E Sbjct: 337 LGDMLELGEKEVTFHKDVIE 356 >gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 457 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 145/481 (30%), Positives = 211/481 (43%), Gaps = 49/481 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L D+L I+ G + ISIDSR+ + F AIKG ++DGH F+ + K Sbjct: 5 LLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNK 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV+ M + + P + V+D L A KL + R + ++AITGSVGKTTTK Sbjct: 65 GVKSVVIKKGMQKLLPD-NFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + K ++NN IGV LT+ + + E+GM LG+I L+ Sbjct: 124 EMVGEVLKKLGKIKLSHSNFNNEIGVGLTILAADKEDKVLVLEMGMRGLGQIENLSKHSE 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKA----- 237 P IAVIT I AH+ + I AK EI + L G + + +D E L+ Sbjct: 184 PDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243 Query: 238 --KSHALGIKTIY-SFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 K L IK SF K+ N LR + +E +E S E G+H A Sbjct: 244 VIKVELLNIKDQKGSFKKNDN----LRGFYDPLNETILIEENTFKISFE------GFHNA 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + L D ++ K F GR K + T+ DESYNA+P S+ Sbjct: 294 SNFLFAYAVAKELGIDFESFNKF--DFVSLGGRNKILKSVKT----TIYDESYNASPESV 347 Query: 354 KAAISVLSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A I L G+ R + + G M E+GE S+ +H E+ +L N S + F Sbjct: 348 NACIKNLI-----GKPRNKFFIFGSMQELGEESEKYH---KEIFNLINNSDIEKCFF--- 396 Query: 413 ALKDALPRSIHVHYSETMDGLFLF---------IQSSLVDGDVVVVKSSNSCGFYRLINL 463 + D I+ Y + + I S GD +++K S ++I L Sbjct: 397 -ICDKKSEKIYTKYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIEL 455 Query: 464 L 464 + Sbjct: 456 I 456 >gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] Length = 259 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ A++G IG GIS D+R++ + F A+ G +DGH+F+ AV +G Sbjct: 4 FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQG 63 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A G+++ D+V G I V DD AL LA RLR +IA+TGS GKTTTK Sbjct: 64 AAGVLISRRDIVIPSG---IAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M L+S K +YNN IG+PLTL + D + E+GM GEIR L + Sbjct: 121 DMTAAVLASRFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVAL 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + V+T + H+ +E IASAKAE+ E +++ G + LN D+ + +++K+ A Sbjct: 181 PTVGVVTNVGETHIELLGSLENIASAKAELVENIQE-GLVILNADNPYVYAMRSKTKA-- 237 Query: 244 IKTIYSFGKSKNADFQ 259 + FG + AD + Sbjct: 238 --AVIFFGLNSQADVR 251 >gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] Length = 468 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 17/368 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S + + G ++V + +G H A+N L + L F P +GR Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFAPVKGR 321 Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 322 LQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376 Query: 385 SQSFHIDL 392 +FH ++ Sbjct: 377 GPAFHREI 384 >gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] Length = 433 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 136/468 (29%), Positives = 213/468 (45%), Gaps = 51/468 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L Q Q H + I+ DSR F A+KG +DG+ F A++KG V Sbjct: 5 ELYQIYQAHPV----------ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYV 54 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 +V+ A G + V+D L +LA R ++ ITG+ GKTTTKE+++ Sbjct: 55 IVDEKEYAKEGEERYIL--VEDCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKELVSA 112 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L G++NN +GVP TL R+ + + + E+G SH G+IR L V P + Sbjct: 113 VLGEKFNVMFTQGNFNNDVGVPKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEPTCGM 172 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTI 247 IT + AHL F E + K E+++ L +F+N D+ E L + I + Sbjct: 173 ITNVGRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADN---EHLMQMAEQRNINRL 229 Query: 248 YSFGKSKNAD----------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++GK +N D F +W+ S W EVQ H IG + NML Sbjct: 230 ITYGKDENCDVWGEVISCAPFLKFRWRTES-FDWHEVQT---------HLIGSYNIDNML 279 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + I AL + P R + A N+ L+ ++YNANP+SM AAI Sbjct: 280 AAITIGLHFDVKPQQIDHALENYIPSNNRSQLEETAHNK----LVVDAYNANPSSMAAAI 335 Query: 358 SVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + PH ++A+LG M E+GE+S H + + L + +VWL G KD Sbjct: 336 ENFRMMDVPH----KMAILGQMGELGEVSHEEHQKVVDQLQTAGLENVWLVGDE---FKD 388 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +P S + ++ + ++++ +++K SNS ++L LL Sbjct: 389 -IPCSYRKF--QNVEEVKEALKANQPHDHYILIKGSNSVKLFQLPELL 433 >gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] Length = 471 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/374 (30%), Positives = 182/374 (48%), Gaps = 20/374 (5%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V+ I+ D+R+++ + A++G +DGHDF A+ +GA ++V + + Sbjct: 20 PDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLVERLL-----DVD 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V+D AL ++A + A ++AITGS GKT+ K ++ L + YA G+ Sbjct: 75 APQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALVLSVLQQAGQAYANPGN 134 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN IG+PL + P D DF I+E+G G+I +LT + RP ++++ IA AHL Sbjct: 135 RNNEIGLPLAVIDAPEDADFAIYEMGAGKPGDIAYLTDIARPDVSLVNNIAAAHLERMGD 194 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQ 259 + +A+ K I+ L GT +N DD+F FE + G + + FG +A+ Sbjct: 195 LLGVATTKGAIYAALPAGGTAVVNADDAFGAWFEQEVVRPAGTG-RQLLRFGLDASAEVT 253 Query: 260 LRKWKQCSEQS-WMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 R + +E S ++ V QG+ ++E+ G H +N L I + L Sbjct: 254 ARDVQAGAEGSRFVLVTPQGEAAIELALP--GRHNVRNALAAAAIGLACGVSLAAIAAGL 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 P GR + G L+D+SYNANP S+ AAI L+ VLGD Sbjct: 312 GQARPVAGRQVAHGL---PGGVVLVDDSYNANPGSVAAAIDALAASGDEA----WLVLGD 364 Query: 378 MCEMGELSQSFHID 391 M E+G + + H D Sbjct: 365 MRELGPEAATLHAD 378 >gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] Length = 427 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 132/440 (30%), Positives = 216/440 (49%), Gaps = 33/440 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 I+ DSR+ FFA+KG +DG+ + A+ G V+ N D IG +I V Sbjct: 16 ITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY--IGERTILV--- 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+VL L +LA R II ITG+ GKTTTKE+L LS+ G++NNHIG Sbjct: 71 DNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEGNFNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F E + Sbjct: 131 VPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFGSFEGVIR 190 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + ++ G IF+ ++ + + S A GI+ I ++G +A F + C Sbjct: 191 TKGELYDYIRRSKGKIFIKKENEYLQ-----SIAKGIEQI-TYGNGDDA-FASGQVVSCD 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + QGK V H IG + N+L + + + +A++ + P R Sbjct: 244 PFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAERISRAIAAYEPTNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELS 385 + + N+ LI ++YNANP+SMK A+ + + P + +LGDM E+G S Sbjct: 304 QFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQP-----KAIILGDMRELGPTS 354 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H ++ + V+L G H + K+ P + T + + ++ + G Sbjct: 355 DELHAEVVAQIKKGQFDKVFLCGEHFSKVGKEFSPFA-------TTEAMVEELRKQPLKG 407 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K S+S G +L ++L Sbjct: 408 YHILIKGSHSMGLEKLADIL 427 >gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis TXDOH] Length = 468 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 176/375 (46%), Gaps = 31/375 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S G ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----STGEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ + A G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGERARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETDALAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ GI + + G ++ DF L + Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY----------AGIWRVAATG-NRLVDFALHGLGRD 253 Query: 267 S--------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + S + + ++V + +G H A+N L + L Sbjct: 254 TPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPLAAVKAGLE 313 Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F P +GR + AL T+ID++YNANP SM+AAI VL+ S R+ V+G+ Sbjct: 314 AFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACS----APRVLVIGE 369 Query: 378 MCEMGELSQSFHIDL 392 M E+G+ +FH ++ Sbjct: 370 MGEVGDEGPAFHREI 384 >gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] Length = 453 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/377 (32%), Positives = 183/377 (48%), Gaps = 17/377 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R + F A+KG +D HDF AV GAG ++V+ + +L P V Sbjct: 27 VKTDTRKVTAGCLFVALKGERFDAHDFAAAAVAAGAGALLVSQRL-----ALDAPQLVVA 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +LA R + A ++++TGS GKT+ KEM LS + G++NN IGV Sbjct: 82 DTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMTAAILSECGEVLYTAGNFNNDIGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ DF + ELG +H+GEI + + L RP A+I +A AHL F + +A A Sbjct: 142 PLTLLRLQPQHDFAVIELGANHIGEIAYTSALARPQAALINNLAAAHLEGFGSLAGVAQA 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EIF GL G +N D++ + ++ L KT++ F A + + + Sbjct: 202 KGEIFTGLPTDGVAIINADNNDWPHWQSM---LDGKTVWCFSPQATAGVEFFASEVRGDG 258 Query: 270 SWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + QL S E+V G H N L + + A + + LS GR Sbjct: 259 NGTQFQLHSPFGSAEIVLPLPGRHNVANALAAAALAMSVGASLKAVRQGLSQLQAVPGRM 318 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 A N+ L+D+SYNAN SM A VL+++ G R+ V+GDM E+G +Q Sbjct: 319 FPIVLAANK---LLLDDSYNANVGSMTTAAQVLAEMP----GYRVMVVGDMDELGAEAQE 371 Query: 388 FHIDLAEVLSLYNISHV 404 H + E I V Sbjct: 372 CHRQVGEAARRAGIDKV 388 >gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] Length = 469 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 146/475 (30%), Positives = 223/475 (46%), Gaps = 28/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T +L + G I P ++ +S D+R + E FFA+ G +D H+F+ A Sbjct: 1 MKPV-TLKELERIACGRIIQGDPGTVLSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG +VV+ G +PV V++ L AL LA R A ++A+TGS GKT Sbjct: 60 AGAGAGCLVVSRTADLPAG---VPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKT 116 Query: 121 TTKEM----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TTK+M L+ L ++K G++NN IG+PLTL R+ + + E+ M GEI Sbjct: 117 TTKDMTASILSTRLRTLKSE----GNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEID 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + +P AVIT I AHL + IA+AK E+ E + G LN + F Sbjct: 173 ALCRIAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRREA 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + K IY +G AD + + S EV L G+ E G H N Sbjct: 233 GRCRG---KVIY-YGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L +G+ L + + L+ G R + +I+++YNANPAS KAA Sbjct: 289 LAAIGVARELGLTWEEVARGLAAVTLT---GMRLEI-IEAKNLRIINDAYNANPASAKAA 344 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-----WLSGFHV 411 + VL +++ G R +AVLG+M E+G + H ++ E + +S + +G Sbjct: 345 LQVLKEMA--GGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAE 402 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL LP ++ M + ++ + DGDVV+VK S ++ LL+ Sbjct: 403 GALDAGLPAERIFRCADNMQAAGI-LEELIRDGDVVLVKGSRGMKMEEIVRCLLK 456 >gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 452 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 177/363 (48%), Gaps = 23/363 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + AS+ Sbjct: 24 VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143 VDD L AL LA A R + ITGSVGKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A+ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI++GL G + +D+ + K + L +T +A+ + K Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTRTFGIDSGDVHAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSN 315 Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +G R + G TLID++YNANP SMKAAI+VL+++ RI V+GDM E Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAINVLARMP----APRIFVMGDMGE 366 Query: 381 MGE 383 +GE Sbjct: 367 LGE 369 >gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894] Length = 452 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 16/379 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ D+R + P F A+KG +D HDF A GAG ++V+ + + +P Sbjct: 24 IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVSRKL-----DIDLPQL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D A +LA R + A ++A+TGS GKT+ KEM L T G+ NN Sbjct: 79 VVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGNLNND 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP+TL R+ + ++ + ELG +H GEI + L RP A++ +A AHL F + + Sbjct: 139 IGVPMTLLRLTPEHEYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQ 265 A AK EIF GL G LN D++ + L +S +G + ++ F + +DF Sbjct: 199 AKAKGEIFTGLPANGIAILNADNN--DWLNWQS-VIGDRKVWRFSPNLDTSDFSATNIHI 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S + ++ ++V+ G H N L + + A + L+ G Sbjct: 256 TSHGTEFTLRTPTGDVDVLLPLPGRHNIANALAASALAMAVGAPLQAIKAGLAKLKAVPG 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R NQ L+D+SYNAN SM AA VLS++ G R+ V+GDM E+G+ + Sbjct: 316 RLFPVHLGENQ---LLLDDSYNANVGSMTAAAQVLSEMP----GYRVMVVGDMAELGDEA 368 Query: 386 QSFHIDLAEVLSLYNISHV 404 ++ H + E I V Sbjct: 369 EACHQQVGEAAKAAGIDKV 387 >gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 609 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/401 (28%), Positives = 191/401 (47%), Gaps = 32/401 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KGA LV+ NTD+ + Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIADE------RI 248 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YNN Sbjct: 249 VKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 308 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P T+ + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 309 HIGLPYTILNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 368 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E + K T F+ DD + L + G +++ +F++ ++ Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFRIESYEF 417 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S + L GK E+ +G H N + + + + + + L Sbjct: 418 SDKGS--KFTLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSM 473 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + R G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 474 RFQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YDDKYKIAILGDMLELGEDE 527 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 +H+++ L I ++L G + D ++ Y Sbjct: 528 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568 >gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] Length = 432 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 42/447 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A++ G+ V+++ A G + V+ Sbjct: 16 VTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEAEYALAGDSHYIL--VN 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + II ITG+ GKTTTKE++ LS G+ NNHIGV Sbjct: 74 NCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D GI E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 134 PLTLLRLRAEHDLGIIEMGASHPGDIKELVDITEPEYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NAD 257 K E+++ L K TIF+++D+ + ++ A G+ I S+G + N+ Sbjct: 194 KGELYDYLRERKNSTIFIHHDNLYL-----RNMARGLNLI-SYGSADELYVNGHVTGNSP 247 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + +W+ + G+S EV IG + N L + I + AL Sbjct: 248 YLIFEWRAGKD---------GESHEVKTQLIGEYNFANALAAVTIGHFFEVASEKIDAAL 298 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + P+ R + + A N TLI ++YNANP SM+A+IS + ++ +LGD Sbjct: 299 REYTPQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFRNMEVE---NKMLILGD 351 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G+ H +A+ L+ V L G A K P Y + + + Sbjct: 352 MRELGKDGPKEHQKIADFLAECGFKDVMLVGEQFAAAKHNFPT-----YPDA-PAVIEVL 405 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 Q S G +++K SN +I+ L Sbjct: 406 QKSKPHGKTILIKGSNGIKLSTVIDYL 432 >gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Scardovia inopinata F0304] gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Scardovia inopinata F0304] Length = 524 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 124/391 (31%), Positives = 183/391 (46%), Gaps = 35/391 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR ++ F AIKG DGHD++ A + GA +V + ++ +P Sbjct: 37 ITSVVTDSRQVSEGSLFVAIKGERVDGHDYVNQAARAGACAALVEHPVEGAV----LPQL 92 Query: 87 GVDDVLGALNKLAV--AARLRSKA-------TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 V D +G+L +LA +R R A T++ ITGSVGKTTTK+++ L + T Sbjct: 93 VVTDTIGSLGRLARYNISRRRQIALAEGKDFTVVGITGSVGKTTTKDLVKDLLQTAGTTI 152 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A +GS+NN IG+PLT ++ + + E+G S GEI +LT LV P IAV + AHL Sbjct: 153 APVGSFNNEIGLPLTAVKVDETTRYFVAEMGASAAGEIAYLTRLVPPDIAVELKVGAAHL 212 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF------- 250 F ++ I AK+E+ + L G LN D L+ +HA T+ F Sbjct: 213 GGFGSVDGIRQAKSELVQALTSQGIAVLNAQDPNIRLMTGSTHA---STLVWFSDGRIDP 269 Query: 251 ----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 G S+ F + ++ L + + +G N++ L VS+ Sbjct: 270 QNLPGDSRKQIFIYATDTRQDQEDHPSFTLHLPDLPGIPVTLGLSGVHNVMNALAAVSVA 329 Query: 307 TA-DVDTAIKALSVFHPKEGRGKRYRCA---LNQG-FFTLIDESYNANPASMKAAISVLS 361 V A +F+ K R + L G FTLID+S+NANP SMKA + LS Sbjct: 330 YCLGVRPQTIASVLFNHKAMSPHRMAVSLVTLTAGESFTLIDDSFNANPDSMKAGLDALS 389 Query: 362 QISPHGEGR---RIAVLGDMCEMGELSQSFH 389 G +IAVLG M E+G + H Sbjct: 390 GWKSAESGNEPVKIAVLGSMLELGPREEDLH 420 >gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] Length = 609 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 115/401 (28%), Positives = 190/401 (47%), Gaps = 32/401 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + + +DSR + FFAI +G+ ++ + KGA LV+ NTD+ + Sbjct: 199 IKNVVMDSRKVTEGSLFFAIN----NGNSYVKDVLDKGASLVIADNTDIADE------RI 248 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YNN Sbjct: 249 VKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 308 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 309 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 368 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E + K T F+ DD + L + G +++ +F + ++ Sbjct: 369 VFKAKTELLEFVNKENT-FVCGDDVYLAKL----------DVNKIGFNEDNNFIIESYEF 417 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S + L GK E+ +G H N + + + + + + L Sbjct: 418 SDKGS--KFTLDGKEYEM--SLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSM 473 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + R G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 474 RFQEIRV----GEDIYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGEDE 527 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 +H+++ L I ++L G + D ++ Y Sbjct: 528 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEY 568 >gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 466 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 214/467 (45%), Gaps = 58/467 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 + DSR+I F + G +DGH F+ +KG ++ D +L+IP Sbjct: 30 VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFISKDC-----NLAIPEELLY 84 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + VDD A KLA R ++A+TGS GKTTT+E++ +L + + A + NN Sbjct: 85 WQVDDTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTRELIHSSLVPLGEVLATSNNNNN 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVP TL + V+ + E+ M LG+I L+ P IAVIT I +H+ + Sbjct: 145 DIGVPFTLLKANVNHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQN 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFEL--------------LKAKSHALGIKTIYSFG 251 IASAK EI + G + + D E +++KS+ S Sbjct: 205 IASAKCEIAAHMNPNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQ 264 Query: 252 KSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 KN D+ W+ + ++ LQG+ H A N + L + L Sbjct: 265 TKKNVDYLGVLDSDNWQITYDGIIFQMPLQGR-----------HNAINFMFALAVAYELN 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D+ I+ LSV P GR +L G ++DE+YNA+P S+ A++ +L+ Sbjct: 314 VPLDS-IRNLSVNLPP-GRNH----SLTFGNINVLDETYNASPESVIASLDLLAT----K 363 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH------VWLSGFHVLALKDALPRS 421 GR AVLG+M E+GE + +H E + ++I+ + ++G A+ A Sbjct: 364 PGRHFAVLGNMYELGEKTIDYH----EQIVQHSIATGLTGLVICVNGPEAEAMLLAGQPL 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ T + FL ++S L GD +++K+S R++ LL E + Sbjct: 420 SYIEVVSTPEDAFLILKSWLNSGDYLLLKASRKVSLERILPLLKEAY 466 >gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] Length = 473 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 125/465 (26%), Positives = 208/465 (44%), Gaps = 59/465 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + + F A+ G DGH ++L A + GA +VV + V + L++P V+ Sbjct: 43 VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVV--EHVET--GLNVPQLVVE 98 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS---IKKTYACIGSYNNH 146 + A +A A R R + A+ GS GKTTT +M+ L++ ++ +A G++NN Sbjct: 99 NSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIHATEGNFNND 158 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP TL + + E GM+H GE+ L +RP + ++T H + + E Sbjct: 159 VGVPHTLLGLHCGCRAAVVEAGMNHRGEMARLADWIRPTVVLMTNAQREHQAYLETVAEA 218 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265 A + L G DD ++ + + A G++T+ Y+ + AD + Sbjct: 219 AFENGLLIAALPNDGVAVYPADDPCADVWASYALARGVRTLTYATAEGVAADVRGE---- 274 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI---------GYHMAQNMLMTLGIVSILTADVDTAIKA 316 + GK + ++ +GI G H N + DVD + Sbjct: 275 ---------LVPGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQIDVDAIAEG 325 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ F GRG R + FTLID++YN NP S A+I++L++ P RI + G Sbjct: 326 LAAFKALPGRGARM---ASPAGFTLIDDAYNCNPDSAIASIAMLAEEKP----ARIFLFG 378 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG---- 432 DM E+G ++ +H ++ I + W +G P S H + +DG Sbjct: 379 DMGELGRDAELWHAEVGGAAKTLGIDYFWAAG----------PLSKHAAEAFGIDGVRGR 428 Query: 433 -------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 L + + G V VK+S+S GF +++ L+ FPA Sbjct: 429 WFADRDELIAHLPELPLKGATVAVKASHSSGFGKVVE-TLKHFPA 472 >gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 458 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 224/449 (49%), Gaps = 40/449 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84 +GI D+R + P F +++G H+DG+ F + A+++G +V D ++ I + Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALV--DDLSYIDEVDESDAD 75 Query: 85 -----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++ D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A Sbjct: 76 LRERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHAT 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+YNN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS Sbjct: 136 QGNYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSG 195 Query: 200 FSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---- 254 F E + AK+E++ L E +G F N +D S+ G+ T+Y G + Sbjct: 196 FGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTL-----ISNLNGLPTVYYNGTTSPRVT 250 Query: 255 -----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + L K + C +++ G+S ++ +G + N+L + + D Sbjct: 251 GAVLPTDESGLLKIEWCDQET-------GESYQLATKLVGDYNLNNILAAITVGLHFGLD 303 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 T +A++ + P R + QG ++D YNANP+SM+ A+S + G Sbjct: 304 PKTINEAVTNYQPHNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALSSYFTMDCQGLN 361 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVH 425 R + +LGDM E+G+ ++S HI + + Y + + + G + AL+ A S H Sbjct: 362 RML-ILGDMNELGDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFALQ-ARYGSEHFI 419 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + L + +++K SNS Sbjct: 420 FFPSATALKQYFTRHQPQHSFILIKGSNS 448 >gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] Length = 481 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 223/490 (45%), Gaps = 44/490 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + D+L+A + G V +++DSR A AF A G DG+ F A+ + A Sbjct: 5 SVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARAA 64 Query: 66 GLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVG 118 +V+ + G + G DD L +LA A RL + T++ +TGSVG Sbjct: 65 TVVLTGPAPKGCAEAAERHGCALLRAEG-DDGEEFLLRLAGAWRRLNPQWTVVGVTGSVG 123 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+ML L + + +A G++NN IG+PLTL + + E+GM+H GE+ L Sbjct: 124 KTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGELSRL 183 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--------IFLNYDDS 230 RP +A+IT + +H+ E IA AKAEI G+ + + + L D+ Sbjct: 184 AACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDND 243 Query: 231 FFELLKAKSHA-LGIKTIYSFGKSKN---------ADFQLRKWKQCSEQSWMEVQLQGKS 280 F L++ + A G++ ++ G+ + D L +++ W E G Sbjct: 244 FAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMP 303 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H+ ++L+ + I L D A+ ++ R G Sbjct: 304 --------GRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTH---MRLEVVTAPGRPR 352 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID+SYNA+P+S+ AA+ VL ++ GRR+AVLG++ E+G+ + H + + Sbjct: 353 MIDDSYNASPSSVAAALDVLCSMA--CTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKP 410 Query: 401 ISHVWLSGFH--VLALKDALPRSIHVHYSETMDGL---FLFIQSSLVDGDVVVVKSSNSC 455 + + L G H + AL E +D + I L + D+V+ K+S + Sbjct: 411 LDLLVLVGTHDAAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVLAKASRAS 470 Query: 456 GFYRLINLLL 465 G R + +L Sbjct: 471 GLDRFVKGVL 480 >gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] Length = 434 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 205/445 (46%), Gaps = 41/445 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85 V+ I +DSR + F IKG DGH FI A++ GA + D S + Sbjct: 12 VDKIILDSREDCTKGLFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKEYPEVRF 71 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+ + AL L AR +I +TGSVGKTTT+ M+ ALS K + G+ N+ Sbjct: 72 ISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKGNANS 131 Query: 146 HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 +G+P+TL M + + + ELG+S GE+ + + IAV T I AHL N E Sbjct: 132 QLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDIAVFTNIGSAHLENLKTKE 191 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSK-NADFQLRK 262 K I EG +K +++L D+ L + K A+G G+ K N F +K Sbjct: 192 NTCFEKMHILEGNQKEVSLYLPKKDAILGTLTEEKIRAMGF-----LGEKKLNLFFYEKK 246 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 E+ + V G HM N + + I L ++ L F Sbjct: 247 -----EEIPLSVP-------------GEHMEDNASVAMAIGLSLGLHKQKLLQGLLEFQG 288 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GRG R + +ID+SYNA+P SMKA++ VL+ S G R+IAVLGDM E+G Sbjct: 289 LKGRGGRLS---TEDGIMIIDDSYNASPDSMKASLKVLA--SEKGAKRKIAVLGDMNELG 343 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGLFLFI 437 + ++H ++ E+L I ++ G ++ A LP + E L I Sbjct: 344 DNEIAYHREIGELLKSLPIDALFTLGKKGEEIRKAMGEKLLPGKACFNLEELSLSLEEEI 403 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462 + GD+++ K+SNS ++I Sbjct: 404 KP----GDLLLFKASNSLSLSKVIQ 424 >gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] Length = 454 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 129/451 (28%), Positives = 205/451 (45%), Gaps = 37/451 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SI 83 ++ I DSR IA + F +KG DGH+FI A + GA VA+ + + Sbjct: 26 IHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFENGA---------VATFSRIELDDV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V D L A LA + +IA+TGS GKTTTK+M+ L++ K Y G+Y Sbjct: 76 PYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTKDMIHDVLATTYKIYKTQGNY 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP + E+G HLG+I L+ + +P I ++T I AHL F Sbjct: 136 NNEIGLPYTVLHMPDSTQKLVLEMGQDHLGDIDLLSKIAQPKIGIVTLIGEAHLEFFGSR 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+IA K +I G+ K GT+ + D + L + + FG + D L + Sbjct: 196 EKIAQGKMQIANGMAKDGTLIVPADKIINDYLPDN------QKVVRFGPDQ--DIFLTEL 247 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHP 322 + + V +E+ G Y+ ML T V L D AI+ AL Sbjct: 248 VERKDSLSFAVNFMDGLIELPVTG-KYNATNAMLATY--VGQLEGVADEAIRSALKNLVL 304 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + R ++ A N ++ + YNANP +MK + + + G++IA+L DM E+G Sbjct: 305 TKNR-TEWKKASNGA--DILADVYNANPTAMKLILETFLTLPANEGGKKIALLADMKELG 361 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMD-----GL 433 + S H + L+ ++ + G + L P ++ +T + L Sbjct: 362 KDSVQMHSQMIRALNPEDLDTLICYGEDIAELAQLASQVFPMGKVYYFKKTAEEDQFADL 421 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q+ L D +++K SNS +++ L Sbjct: 422 VKQVQTILQPADQILLKGSNSMQLDKVLEAL 452 >gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] Length = 474 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 211/467 (45%), Gaps = 59/467 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR + F A G H DGH + AV V + + +P V Sbjct: 31 VVIDSRKVEAGSLFAAFAGEHVDGHAYAERAVAA-------GAAAVLAARPVGVPAIVVP 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DV AL LA A R ++A+TGS GKT+TK+++ L S T GS NN IG+ Sbjct: 84 DVEKALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLQSHAPTVWTPGSLNNEIGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT + + + E+G +G I +LT L P I ++ + AH+ F G E+IA A Sbjct: 144 PLTALQATAETRHLVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAQA 203 Query: 210 KAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------- 257 K E+ E L G LN DD + A++ A +T+ FG++++AD Sbjct: 204 KGELVEALPAEADGGVAVLNADDLLVRAMSARTKA---RTVL-FGEAEDADVRATEVRMT 259 Query: 258 ------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 F L CS+ + ++L G+ HH A + LG+ ++ ++ Sbjct: 260 PGGRPAFTLHTPTGCSD---VTLRLYGE-----HHVSNALAAAAVAHVLGMSAM---EIA 308 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE- 368 TA+ R+R + + T+++++YNANP SM+AA+ L + Sbjct: 309 TALSGAGTL-------SRWRMEVTERADGVTIVNDAYNANPESMRAALRALVAMGGAARA 361 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPR 420 GR AVLG M E+G+ S + H + + N+S + G + A + Sbjct: 362 TGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWLQLGAYNEGSWG 421 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V S+ + L ++S L GDVV+VK+S S G R+ LLE Sbjct: 422 EESVLVSDAQAAVDL-LRSELRPGDVVLVKASRSIGLERVALALLER 467 >gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 613 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/407 (28%), Positives = 198/407 (48%), Gaps = 37/407 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 V + +DSR + FFAI +G+ +I + KGA LV+ NTD+V + Sbjct: 203 VKNVVMDSRKVTEGSLFFAIN----NGNSYIKDVLDKGASLVIADNTDVVDE------RI 252 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YNN Sbjct: 253 VKVSDTVATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYNN 312 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 313 HIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDN 372 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E ++K T F+ DD + L K + +G ++ + ++ +F + K Sbjct: 373 VFKAKTELLEFVDKEDT-FVCGDDVY--LAKLDVNKIGFNEENNY-RIESYEFSDKGSKF 428 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++ L GK + + I +A+ + + + D+ + Sbjct: 429 TLDGKEYQMSLLGKH-NISNTAIAIELAKKIGLGEEEIEEGLKDIKIS------------ 475 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R++ + G I+++YNA+P SM AAI L++I + + +IA+LGDM E+GE Sbjct: 476 -GMRFQ-EIRVGQDIYINDAYNASPTSMMAAIDTLNEI--YNDKYKIAILGDMLELGEEE 531 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYS 427 +H+++ L I ++L G + + +K+ HYS Sbjct: 532 VKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKFEEHRFCHYS 578 >gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] Length = 427 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 114/380 (30%), Positives = 180/380 (47%), Gaps = 45/380 (11%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ + + +DSR I FFAI+ +G+ ++ A+ KGA LV+ + Sbjct: 15 LPKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIAD-----RYSGN 65 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V V++ + + +LA R K +IAITGS GKTTTK+++ LS +T +G Sbjct: 66 HEKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLG 125 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNNHIG+P T+ + +F + E+GMS GEI L + RP +IT I +HL Sbjct: 126 NYNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLK 185 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + AK E+ L + G + DD F + + A G + D+++ Sbjct: 186 TRENVFKAKTELLPYLPE-GCFISSGDDVFLKKIPA----------IHVGYDERNDYRIF 234 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL---- 317 +++ +S QL K E+ G H N M + I ++ D T + L Sbjct: 235 GYQKKDRRSSF--QLNDKQYEIPLE--GKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIE 290 Query: 318 ---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 F E +G +Y I+++YNA+P SM A+ L + + +IAV Sbjct: 291 LSPMRFERSEYQGTKY-----------INDAYNASPISMGVALDSLVETTAEC---KIAV 336 Query: 375 LGDMCEMGELSQSFHIDLAE 394 LGDM E+GE +FH D+ E Sbjct: 337 LGDMLELGEKEVTFHKDVIE 356 >gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase D-alanyl-D-alanine-adding enzyme; D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 459 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 217/455 (47%), Gaps = 51/455 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG--LVVVNTDMVASIGS--LSIPV 85 IS S+ I F ++G DGH++I A++ GA L N ++ ++ + + Sbjct: 33 ISTSSKEIQKNTLFVPLRG-ERDGHEYIADALKAGATGFLCEKNHPILKNLSNEDQKKAI 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSY 143 F V D L AL LA R R +IAITGS GKT+TK++L S + K +Y Sbjct: 92 F-VKDTLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDLLGGLFSFLGSKSLVVTEKNY 150 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP TL R+ I E+GM+H GEI L+ + P A+IT I AH+ N Sbjct: 151 NNEIGVPFTLFRITERTQVVICEMGMNHRGEINRLSKMAEPTHALITNIGSAHIENLKSR 210 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA K +I GL G +F+ D F L +AK ++K ++ L+ W Sbjct: 211 ENIAEEKIDIINGLRPNGVLFVPDDLDF--LGRAKQ------------RTKKSNVNLKIW 256 Query: 264 K--QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT--LGIVSI----LTADVDTAIK 315 K + E VQ G +E I +++ + L++ G++++ DV+ Sbjct: 257 KHSKNPELKVNIVQKNGFLLEWRMEKIQWNIPGSKLLSNVRGMIAVGNFFQIPDVEMKKT 316 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-V 374 + P + R + +GF+T+ID+SYNANP SM ++I Q + + + I V Sbjct: 317 IRTYKSPNK------RLNIKKGFYTIIDDSYNANPESMLSSIDASIQ---YAQNKPIVWV 367 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV----HYSETM 430 LG M E+G+ S+ +H ++ + L Y L GF D LP V H+ + Sbjct: 368 LGTMKELGKFSKFYHEEIGKNLKKY--PKGTLLGFG----DDTLPMVKQVSNGKHFQSKV 421 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D L FI+ + V++VK S S +++ L+ Sbjct: 422 D-LVEFIKKEIPKQAVILVKGSRSMKMEEIVSELV 455 >gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] Length = 464 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 184/385 (47%), Gaps = 41/385 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V S D+R FFA+KG ++D H ++ +AV +G VVV + + +P Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVEREC-----EIDVPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 80 VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +GVP+TL R+ + + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 137 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258 F + +A AK EI+ GL++ G +N + + K +G + + SF ++D Sbjct: 197 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIGSREMQSFSYIGSDSDS 252 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309 W + +E+ L G + G +G H N L + + A Sbjct: 253 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ A+KA + +G+ Y +N ID++YNAN SMK+AISVL + Sbjct: 308 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDTYNANVDSMKSAISVLENYPAY--- 361 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394 RI +GDM E+GE S H ++A+ Sbjct: 362 -RIFAVGDMAELGEESSKCHQEVAD 385 >gi|51246753|ref|YP_066637.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein [Desulfotalea psychrophila LSv54] Length = 1014 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 139/485 (28%), Positives = 217/485 (44%), Gaps = 44/485 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L+ A G IG + + G ++ DSRS+ F A++G ++DGH ++ V Sbjct: 542 WTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAA 601 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGK 119 GA +VV + L+ P V D AL +A A R +K ++ ITGS GK Sbjct: 602 GAACLVVEK----ARPDLTCPQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGK 657 Query: 120 TTTKEMLTIALSSIKKTYA---------CIGSYNNHIGVPLTLARMPVDV--DFGIFELG 168 TT KEM L+S+ A G++NN IG+PL+L +P+D + E+G Sbjct: 658 TTIKEMTASILASLWPAGAEYPENVVLKTEGNFNNLIGLPLSL--LPLDNMHRAAVLEMG 715 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 M+ GEI L + +P I + + AHLS IE +A AK E+F + +N D Sbjct: 716 MNSPGEIARLAEIAQPDICCVANVHAAHLSGLGSIEGVARAKEELFAHAPVDSILVVNLD 775 Query: 229 DS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHH 286 D E+ K K YS + +AD S + L +S V Sbjct: 776 DPHVVEMAKGYEQK---KICYSLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLD 832 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G H N L GI A L + R +R R + N +T+I + Y Sbjct: 833 TLGEHNVSNALAAAGIALAAGASPQQIALGLGSYKTPSKRLERIRTSCN---WTIISDCY 889 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPASM A + L+ ++ GE ++IA++GDM E+GE ++ H + + ++ ++ + Sbjct: 890 NANPASMSAGLRTLATVA--GE-KKIAIVGDMLELGEFAEEAHRQIGSLAGELSLDYLLI 946 Query: 407 SG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCG 456 G AL + + V + + + ++Q+ DG D+V +K S Sbjct: 947 VGEFASFLQQAALNSGMGKE-QVLVFPSKEAIIDWLQAYQADGGLGEKDIVFIKGSRGMQ 1005 Query: 457 FYRLI 461 LI Sbjct: 1006 LETLI 1010 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 92/390 (23%), Positives = 150/390 (38%), Gaps = 51/390 (13%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84 V ++ DSR +A F A +G DGH ++ A+ +G +V+V V+ P Sbjct: 39 LVADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPA 98 Query: 85 -VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V V D A K+ A K +++ ITG+ GKTT +L L+ + IG Sbjct: 99 LVIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVIG 158 Query: 142 SYNNH----------IGVPLT----------LARMP-VDVDFGIFE-----LGMSHLGEI 175 + NN I LT L RM VD I E + + +G + Sbjct: 159 TVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAISQARIGAL 218 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE- 233 RF +A+ T ++ HL +E+ SAK +F L++ G + D + Sbjct: 219 RF-------DLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQT 271 Query: 234 --LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIG 289 L + G S+G+ +D QL ++ ++ V+L + +E +G Sbjct: 272 EFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVG 331 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESY 346 N+L + L + + GR +R N +D Y Sbjct: 332 RFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVD--Y 389 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ +S L + PHG+ IAV G Sbjct: 390 AHTPDALDKLLSTLGDV-PHGD--LIAVFG 416 >gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] Length = 475 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 115/405 (28%), Positives = 183/405 (45%), Gaps = 35/405 (8%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 N ++T + I G ++ +S DSRS P + F A+KG +D HDF+ Sbjct: 6 NAMFTLREAAALIPGATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVA 65 Query: 62 QKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + V+ +VA + ++P V D L LA R + ++A+TGS GKT Sbjct: 66 ARN-----VSAVLVARVPDGWTVPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKT 120 Query: 121 TTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ A + A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 121 TVKEMIASIFAAAVGAAERLATAGNFNNDVGLPLTLFRLNAAHRLAVVELGMNHPGETSL 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +AV+ H + +E +A A + L+ G +D++ + + Sbjct: 181 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALKPEGVAVFPANDAYASIWRV 240 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIG 289 A G + I DF L ++ +E + + ++ +++V +G Sbjct: 241 A--ATGNRII---------DFALNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLG 289 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNA 348 H A N L +D + L F +GR + R AL +ID++YNA Sbjct: 290 DHNAHNALAATSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNA 349 Query: 349 NPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 NP SM+AAI VL S SP R+ V+GDM E+G+ FH ++ Sbjct: 350 NPDSMRAAIDVLASHASP-----RVLVMGDMGEVGDNGPEFHREI 389 >gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 450 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 132/432 (30%), Positives = 201/432 (46%), Gaps = 33/432 (7%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVFG 87 +D R P F A G DGHDF A + GA VA +GS LS V Sbjct: 34 LDGRQAEPGGLFVAFAGDRVDGHDFAEQAGEAGA---------VAVLGSRPTSLSTVVVK 84 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V RLR T+ +TGS GKT+TK++L +SS T A + S+NN I Sbjct: 85 DVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKTSTKDLLATVVSSTAPTIAAVDSFNNEI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVP+T+ R F + E+G +G+I LT LV P +AV+ + +HLS F + IA Sbjct: 145 GVPVTMLRADAASRFLVLEMGARRVGDIADLTGLVAPDVAVVLNVGQSHLSYFGSRQAIA 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 AK E+ GL GT LN DD +++ ++ + +FG +++AD ++ + Sbjct: 205 KAKGELVRGLAPGGTAVLNADDPVVVAMRSLTNG----PVLTFGYAEHADVRVVDLTLDR 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S S+ G + V +G H A N + +D A AL+ Sbjct: 261 LSRPSFTLRTADGSAF-VELPLVGAHQAHNASAAVAAGLAAGVPLDVAASALATASL--- 316 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 ++R L + TL+++S+N+NP S +AA+ L+ I GRRIAVLG+M E+G+ Sbjct: 317 --SKWRMELRELDSGATLLNDSFNSNPDSTRAALDALAGIE---GGRRIAVLGEMLELGD 371 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 +S H E + V + G L A ++ + + D +++ + Sbjct: 372 DHESEHRAAGEYAAARADVVVAVGGIASLVADGAGDSAVALPDN---DAAIDWLRGHITA 428 Query: 444 GDVVVVKSSNSC 455 GDVV+VK+S Sbjct: 429 GDVVLVKASRGV 440 >gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus radiotolerans SRS30216] gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus radiotolerans SRS30216] Length = 487 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 208/461 (45%), Gaps = 46/461 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR+ P F A+ G DG D AV GA LV+ ++ G+ + V + Sbjct: 30 VVVDSRAAGPGSLFVALPGERVDGADHAAGAVAAGASLVLAEREVELPAGAALVVV---E 86 Query: 90 DVLGALNKLA--VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D + AL +LA V RLRS + ++ +TGS GKTTTK++L L+ A GS+N Sbjct: 87 DGVTALGRLARGVLERLRSTGSGPLVVGVTGSQGKTTTKDLLARVLAPAGPVVAPAGSFN 146 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG PLT+ R + E+G LG I L + RP + V + AH F +E Sbjct: 147 NEIGAPLTVLRADRGTVTLVVEMGARGLGHIAALCAIARPDVGVELVVGAAHAGEFGSLE 206 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKW 263 A AK E+ E L G LN DD + ++ A + +FG+ +AD + L Sbjct: 207 TTARAKGELVEALPAEGLAVLNADDDRVAAMATRTRA----RVLTFGRGAHADVRALDVE 262 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN----MLMTLGIVSILTADVDTAIKALSV 319 + +Q G V G H N + LG L +V ++ A + Sbjct: 263 LDALARPRFTLQHGGGRARVQLQLHGEHQVTNALAAAAVALGTGRPLE-EVAASLSAATE 321 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDM 378 P R + T++ ++YNANP SM+AA+ L ++ G GRR AVLG+M Sbjct: 322 LSP-----GRMQVVERPDGVTVVHDAYNANPDSMRAALKALVGMA--GAGRRTWAVLGEM 374 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV------------HY 426 E+G S+ H L + ++ + + G A R ++ + Sbjct: 375 LELGPASREEHDLLGRTVVRLDVDQLLVVG--------AGARPVYTGAVMEGSWGEEAAF 426 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +D F+++ L GDVV+VKSSN G RL L+ + Sbjct: 427 ATDVDDALEFLRARLRPGDVVLVKSSNGAGLARLATTLIHD 467 >gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 455 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 175/362 (48%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D A G+L Sbjct: 24 VSRIVTDSRDICAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSHEDCAALDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGS 142 VDD L AL LA A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLKEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G +IA AK+EI++GL + G + +D + + S +T +A+ + Sbjct: 199 GTLDIAKAKSEIYQGLGEDGLALIPCEDEHAAVFQTTSQGHQQRTFGVDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + ++ + L F Sbjct: 259 KPLSCE----FDLVCGNERAAVVLPVPGRHNVHNAAAATALALAAGLSLNDVAEGLQGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia symbiont of Datisca glomerata] gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia symbiont of Datisca glomerata] Length = 475 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 210/455 (46%), Gaps = 45/455 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ IDSR +A F A+ G DGHDF A GA V+ + ++ PV Sbjct: 26 VTGVVIDSRQVAAGALFVAVAGERVDGHDFAAAAAGAGAVAVLAARPVGVPAVVVADPVA 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 AL LA R RS AT++A+TGS GKTTTK++L L + T A GS+NN Sbjct: 86 -------ALAALAAQVRTRSSATVVAVTGSAGKTTTKDLLADLLGELGPTVAAAGSFNNE 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205 IG+PLT+ R+ F + E+G G I L L RP I V+ + AHL ++ G Sbjct: 139 IGLPLTVTRIEPATRFAVLEMGARGPGHIAALCELARPRIGVVLNVGSAHLGQYADGRAG 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK E+ E + + LN DD + A++ + +FG+ + AD + + Sbjct: 199 IARAKGELAEA--ASDAVVLNADDPLVAGMAARARG----EVITFGEGERADVRAHDVRV 252 Query: 266 CSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + ++ ++ G+ V +G H + L + L A +ALS + Sbjct: 253 GDDGRARFDLVAAGERHPVALTLVGEHQVGSALAAAAVAIRLGLPPARAAEALSRARARS 312 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGE 383 R A+ T+I+++YNANP SM+AA+ L +S GRR AVLG M E+G Sbjct: 313 --RWRMEVAVTDTGVTVINDAYNANPESMRAALKTLVDLS---RGRRAWAVLGGMEELGA 367 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--------- 434 + H L ++ + + G R+ +H +++G + Sbjct: 368 SADDEHDALGRLVVRLGVEQLVAIG----------ERARRIHLGASLEGSWSGESVWVAD 417 Query: 435 -----LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ LV GDVV+VK+S + G R+ + L Sbjct: 418 VEQACTLLREQLVPGDVVLVKASRAFGLERVASEL 452 >gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51] gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 468 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 216/471 (45%), Gaps = 23/471 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--LHAVQK 63 T +++ A G + P V + DSR + F +KG D H F+ A Sbjct: 6 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGA 65 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L +T M A ++ VD AL +A A R R ++ ITGS GKTTTK Sbjct: 66 AAALTQEHTRMEAEEAWIA-----VDSTQLALQHIAAAYRQRFSIPVVGITGSAGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM +ALS+ K G++N+ IG+PL + + + + + E+G+S GE+ L + Sbjct: 121 EMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQVAE 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AV+T + H+ E I K I + + +FLN DD L+ K+ G Sbjct: 181 PKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT---G 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGI 302 + ++ +G + DF+ E + G+ S+EV+ +G H + L L + Sbjct: 238 YEAVF-YGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAALAV 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L +D A AL + P R + Y +N+ +ID+SYN++P + K+++SVL+ Sbjct: 297 AERLGVPLDRAAAALGDYRPLAMRQQIYH--VNE--VAVIDDSYNSSPGAAKSSLSVLAG 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALP 419 GRR+AVL DM E+GE S+ H ++ + + + G A+ + ++ Sbjct: 353 FRA---GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGARSVR 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I + ++S L GD V+VK S ++ LL +FPA Sbjct: 410 SGIDCRVFDHNRQAAAELKSFLSPGDAVLVKGSRGMHTDEIVRALL-QFPA 459 >gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 458 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N I ID++ I P F A+ G +D H FI A++K V ++ + P Sbjct: 23 LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V++ AL ++A R ++KA I+AITGS GKT+ KEM L T + I + NN Sbjct: 78 IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IGVP+TL ++ + +G+ ELG S GEI + +++ +P I +I I AHL F + Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 ++ AK+EIF GL+ T+ +N D F K I +S K K ++F K Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317 + + + + +GY N + + + I +DT I + Sbjct: 257 HIHSTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 KR + + LID++YN+N +SM +AI VL ++ G +I V GD Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361 Query: 378 MCEMGELSQSFH 389 M E+GE S +H Sbjct: 362 MAELGENSMMYH 373 >gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-064] Length = 392 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 190/391 (48%), Gaps = 19/391 (4%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + PV V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + Sbjct: 13 MDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTG 72 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ Sbjct: 73 GNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYL 132 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 EEIA AK EI GL +G + ++++ + G +FGKS+ A+ Sbjct: 133 GSREEIAKAKLEITAGLNPSGILIYPHEETLL-----LGNINGDFRQLTFGKSEAAEIYP 187 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKAL 317 + + +E + + +E+ IG H N + + + I + +A+K + Sbjct: 188 LEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNM 246 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 E R + +++++YN++P ++K + + G+ + + VL D Sbjct: 247 ------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYL-VLAD 299 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLF 434 M E+G+LS H + AEVL I ++L G + A D I VH+ T + L Sbjct: 300 MLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLE 359 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S + + ++VK S G ++ L+ Sbjct: 360 TALLSEMNGNEWILVKGSYGMGLKDVVENLI 390 >gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 487 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 200/463 (43%), Gaps = 38/463 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVVNTDMVASI 78 + DSR +AP F A+ G DGHDF +L A + A V+V + Sbjct: 30 VEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAPAVIVPPVPAEAT 89 Query: 79 GSLSIPVFGVDDVLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 G +++ G D GA A V RL + T++ +TGS GKT+TK+++ L Sbjct: 90 GLMAL--AGDTDGSGAAVLAALARLARYVVDRL-PRLTVVGVTGSSGKTSTKDLIAQLLE 146 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + T A GS+NN +G P T R D + EL +G I L + P I + Sbjct: 147 PMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLN 206 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + AHL F E +A AK E+ E L G LN DD + +++ A + G Sbjct: 207 VGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRA----RVVLVG 262 Query: 252 KSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +S A + + + S+ V QG S +V G H N L I L A Sbjct: 263 ESPGAHVRAEDIVLDEQARPSFTLVAPQG-SAQVSLPLHGEHHVGNALSAAAIALELGAT 321 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ LS R R A T+++++YNANP SM+AA+ L+ ++ G Sbjct: 322 LEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPG 379 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R AVLG M E+GE H ++ + NI + + G + S+ + E Sbjct: 380 RAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGA--SLEGSWGEE 437 Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +D +++ L GDVV+ K+S +R+ L+E Sbjct: 438 SVLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 480 >gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] Length = 465 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 119/459 (25%), Positives = 208/459 (45%), Gaps = 33/459 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GI+ DSR++ P + + + G ++DGH+F ++ GA + P+ Sbjct: 17 ISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCPVPDELAEAPLV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L AL +LA A R I+ ITGS GKTTTK++ L +I + + G+ NNH Sbjct: 77 LVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLGTIYRVHKTAGNLNNH 136 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT+ ++ ++ + E+GMS GEI L+ + P A+IT + AH+ I Sbjct: 137 IGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITNVGDAHMLQLGSRAGI 196 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI GL G + N D+ A+ + FG + + + + Sbjct: 197 AEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFGAAADCQWSASNVQIG 256 Query: 267 SEQSWMEV-----------QLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDT 312 S+ S +V QL+G ++ V G H N L + + + A + Sbjct: 257 SDASAFDVVSPLLSAEEAEQLRGITLPVP----GAHNVMNALAAIAVAYRFGVPAAQIRD 312 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + +++ G R + +++++YNANP +++AA+ ++++++ G R+ Sbjct: 313 GLATVTM------TGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELT--GYRRKW 364 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVH 425 VL DM E+G H + ++ V G + D A R+ V Sbjct: 365 VVLADMLELGPEEADLHRGIGAYVTPEKADAVLTWGPLAQYIADGAAVAFEAAGRADDVR 424 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + E + L +++ L D+V+VK S +++ L Sbjct: 425 HFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVVQAL 463 >gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 458 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 200/463 (43%), Gaps = 38/463 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVVNTDMVASI 78 + DSR +AP F A+ G DGHDF +L A + A V+V + Sbjct: 1 MEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAPAVIVPPVPAEAT 60 Query: 79 GSLSIPVFGVDDVLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 G +++ G D GA A V RL + T++ +TGS GKT+TK+++ L Sbjct: 61 GLMAL--AGDTDGSGAAVLAALARLARYVVDRL-PRLTVVGVTGSSGKTSTKDLIAQLLE 117 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + T A GS+NN +G P T R D + EL +G I L + P I + Sbjct: 118 PMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLN 177 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + AHL F E +A AK E+ E L G LN DD + +++ A + G Sbjct: 178 VGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRA----RVVLVG 233 Query: 252 KSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +S A + + + S+ V QG S +V G H N L I L A Sbjct: 234 ESPGAHVRAEDIVLDEQARPSFTLVAPQG-SAQVSLPLHGEHHVGNALSAAAIALELGAT 292 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ LS R R A T+++++YNANP SM+AA+ L+ ++ G Sbjct: 293 LEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRPG 350 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R AVLG M E+GE H ++ + NI + + G + S+ + E Sbjct: 351 RAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGA--SLEGSWGEE 408 Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +D +++ L GDVV+ K+S +R+ L+E Sbjct: 409 SVLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 451 >gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 464 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 128/453 (28%), Positives = 221/453 (48%), Gaps = 31/453 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +++G+SIDSR+I F I G DGH+F+L AV++GA ++ + + G + +PV Sbjct: 26 YIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVEEGASAILASHNPFE--GEVPVPV 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L L LA AAR +KA +I ITG+ GKTT KE++ L+S K ++N Sbjct: 84 ILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTVKELVAQLLTSKGKVAKNYLNFNT 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+ ++ D DF + E+G+S+ ++ L ++ P IA+I + P HLS + + Sbjct: 144 QIGMSFSILAAQGDEDFWVMEVGISNPQDMEELGTILTPDIALIINVGPGHLSGLNK-QG 202 Query: 206 IASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-- 261 +A KA++ + E G + L+Y D E+ + +S +L + D Q R Sbjct: 203 VAYHKAQLLRYMKDEGLGIVSLDYPDLVKEVKELRSGSLFFSVL---------DNQCRYY 253 Query: 262 -KWKQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL- 317 K+ E + + L ++V +G +++L + I L D+ + L Sbjct: 254 SKYTGIVENGYGTYRLWLDDDIVDVTSPFLGNFGMESVLASATIAHKLGVSSDSIKQQLF 313 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 P+ R+ C G + ID+SYNANP SM A I ++S + + VLG+ Sbjct: 314 QAILPQ----NRFSC-FTHGNWLCIDDSYNANPLSMNAVIESTYKLSDE-KKPLVYVLGE 367 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGL 433 M E+G+ S++ H + + L+ S ++ G + + LK + I S + Sbjct: 368 MLELGDSSEAEHEKIGKKLAQTGASIIFWKGGMIDNVLIGLKGGGFKGILEKISTEQEFQ 427 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 LF++ L +G ++V K S S +++ ++ Sbjct: 428 SLFLKHRLDEG-IIVFKGSRSNKMEVFVDVFMK 459 >gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas uenonis 60-3] gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas uenonis 60-3] Length = 456 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 202/400 (50%), Gaps = 21/400 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLSI 83 +GI D+R + P F +++G H+DG+ F A+++G +V+ D V Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 ++ D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A G+Y Sbjct: 78 LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS F Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFGTP 197 Query: 204 EEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQ 259 E + AK+E++ L E G F N +D S+ G+ T+Y G S Sbjct: 198 EGVVKAKSELYAYLREHDGQAFCNGEDKTL-----ISNLNGLPTVYYNGTSSPRITGSVL 252 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + W + Q G+S ++ +G + N+L + + D T +A++ Sbjct: 253 PTDETGLLKIEWRD-QETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTN 311 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + P R + QG ++D YNANP+SM+ A++ + G R + +LGDM Sbjct: 312 YQPHNERSQVLP-PTAQGNRVILD-CYNANPSSMEVALNSYFTMDSQGLNRML-ILGDMN 368 Query: 380 EMGELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALK 415 E+G+ ++S HI + + Y + + + G + AL+ Sbjct: 369 ELGDAAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQ 408 >gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_23] gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_23] Length = 431 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 31/430 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L K I F+++D+ + + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G++ +V IG + N L + I + KAL+ + P+ Sbjct: 254 AGKD---------GEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + + + N VWL G A + + +V E + L Q Sbjct: 357 DSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410 Query: 444 GDVVVVKSSN 453 G +++K SN Sbjct: 411 GYTILIKGSN 420 >gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] Length = 464 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 112/371 (30%), Positives = 173/371 (46%), Gaps = 22/371 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+RS+ P + A++G +DGHDF A +GA ++V + + +P Sbjct: 24 IDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARGASALLVERLL-----PIELPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIG 141 V D AL K+A + + + AITGS GKT+ K +L L + K YA G Sbjct: 79 LVADSELALAKIATGMQRDRETEVFAITGSNGKTSVKSLLLSILQQVAQHAHKVVYANPG 138 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P D D+ ++E+G G+I +LT + RP A++ IAPAHL Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258 + +A K I+ L G +N DD++ + H +G + +G AD Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADI 256 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + ++ S + VV G H N L + D+ L+ Sbjct: 257 TARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLALAAGVDLALIAAGLA 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GR ++ L G L+D+SYNANP S+ AAI L+ G VLGDM Sbjct: 317 EAQPVPGRQIAHQ--LRNGAV-LVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369 Query: 379 CEMGELSQSFH 389 E+G +++ H Sbjct: 370 RELGPDAEALH 380 >gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] Length = 470 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 115/377 (30%), Positives = 173/377 (45%), Gaps = 35/377 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 IS DSRS P + F AIKG +D HDF+ AV+ + ++V T ++P V Sbjct: 29 ISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVTRTPQ-----DWNVPALKV 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNN 145 D L LA R R ++A+TGS GKTT KEM+ A A G++NN Sbjct: 84 ADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL R+ + ELGM+H GE L + P +AV+ H + +E Sbjct: 144 DIGLPLTLFRLHAAHQLAVVELGMNHPGETSELAKIAEPTVAVVNNAQREHQEFMATVEA 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A + L G DD++ + + A G + + DF L ++ Sbjct: 204 VALEHASVIHALSPEGVAVFPADDAYASIWRVA--ATGNRIM---------DFALNSAER 252 Query: 266 CSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +E + + + +EV +G H A N L +D + L Sbjct: 253 TTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNALAATSAALAAGVSLDAIRRGL 312 Query: 318 SVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVL 375 F +GR + + L T+ID++YNANP SM+AAI VL S+ +P R+ V+ Sbjct: 313 ESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAIDVLASRPAP-----RVLVM 367 Query: 376 GDMCEMGELSQSFHIDL 392 GDM E+G+ +FH ++ Sbjct: 368 GDMGEVGDNGPAFHREI 384 >gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis DSM 2588] gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis DSM 2588] Length = 438 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 42/442 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R + + FFA+KGP+++G+ + A++KGA VV+ + + + + + Sbjct: 28 VQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEE---AYYTQPDKMMLTN 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA+ R +AITG+ GKTTTKE+++ L+S KT A G+ NNHIGV Sbjct: 85 DALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLNNHIGV 144 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ R+P D + + E+G +H EI + P +IT I AHL F E + A Sbjct: 145 PLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRRA 204 Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L GT+F+ + + + GI+T+ ++G++ AD+ + ++ Sbjct: 205 KGELYDFLRNNKGTVFVCNEYPYLVDMSK-----GIQTVITYGEAA-ADY---TGQPLAD 255 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQ--------NMLMTLGIVSILTADVDTAIKALSVF 320 + + V++ G H GIG +Q N++ + + + A+S + Sbjct: 256 SALLSVKVTG------HEGIGQIDSQLVGAYNFPNIMAAVAVGLHFGVPAEKIQHAISSY 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + + QG T+I ++YNANP+SMKAAI + I+ +++ +LG M E Sbjct: 310 VPSNNRSQ----VMKQGSNTIIMDAYNANPSSMKAAIDNFAGITAE---KKVLLLGGMME 362 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQS 439 +G+ S + H L ++L + V L G + ++ H + Y E +++Q Sbjct: 363 LGDDSVAEHQALVDLLQRTHWHAVVLVGGDFI-------KTNHPYIYQENAAAAAIWLQQ 415 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 +++K S S G ++I Sbjct: 416 QQFTDTYLLIKGSRSMGMEKVI 437 >gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. D22] gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. D22] Length = 431 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 31/430 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L K I F+++D+ + + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G++ +V IG + N L + I + KAL+ + P+ Sbjct: 254 AGKD---------GEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + + + N VWL G A + + +V E + L Q Sbjct: 357 DSPAEHQKIVDYIKESNFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410 Query: 444 GDVVVVKSSN 453 G +++K SN Sbjct: 411 GYTILIKGSN 420 >gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] Length = 952 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 19/375 (5%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 ++PQ V+G+S D+R I P E F A+ G ++D H+++ A +G G S Sbjct: 509 LLPQ--VSGVSTDTRRIGPGELFVALVGENFDAHNYLDQA--EGRGACAAVVAHAVSDSK 564 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---TY 137 L V G D AL ++ A R + ++A+TGS GKTTTKEM++ L+ + Sbjct: 565 LPQLVLG--DTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEWQGESGRL 622 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A G+ NN IGVPLTL R+ + +FELGM+H GEI L + P + ++T H Sbjct: 623 ATAGNLNNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQ 682 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +E +A L G D+ + + A + + + FG D Sbjct: 683 EFMHTVEAVAHENGAAIAALPDDGVAVYPGDEPYCAIWDALAEP---RRVLRFGLQPGLD 739 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + + V ++ G H +N L + +D A++AL Sbjct: 740 VYAEQILADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRAL 799 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S F P GR + + ++ G LID++YNANP S++ AI VL++I+ G R+ VLGD Sbjct: 800 SRFAPVAGRMQHKK--MSDGTL-LIDDTYNANPDSVRVAIDVLARIA----GTRVLVLGD 852 Query: 378 MCEMGELSQSFHIDL 392 M E+G+ + H ++ Sbjct: 853 MGEIGDNGPALHAEV 867 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 156/380 (41%), Gaps = 41/380 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS-IP 84 + +DSR I P + F A G DG +I A+ GA V+ + A+ GS +P Sbjct: 31 LKLDSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGSDALQAAAGSTPMLP 90 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V G+ +LG L R + ++A+TG+ GKT++ + + ALS K IG+ Sbjct: 91 VTGLRALLGELADTWY-GRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGTLG 149 Query: 145 ----------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186 + + V TLA M D G + M S +G + VR + Sbjct: 150 AVLPDGRTLGGDLTTPDVLTVHRTLAAM---RDAGAQAVAMEASSIGIEQGRLDGVRVAL 206 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T + HL +E +AKA +F T + +N DD L A Sbjct: 207 AAFTNLTRDHLDYHGTMERYEAAKARLFNWPGLTAAV-VNADDEAGRRLLATLPTGMAAM 265 Query: 247 IYSFGKSKN--ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 YS S + A + R + S+ Q + V G++ ++V +G H N+L+ G++ Sbjct: 266 GYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEA-QIVTRLLGAHNVSNLLLVAGVL 324 Query: 304 SILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + L+ P +GR + + +G ++D Y P ++ A Sbjct: 325 YKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVD--YAHTPDALSRA 382 Query: 357 ISVLSQISPHGEGRRIAVLG 376 ++ L ++ GR I + G Sbjct: 383 LTALRAVAVARSGRLICLFG 402 >gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] Length = 470 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 34/466 (7%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P + G + DSR A + A G H DGHDF+ A+ GA V+ ++ Sbjct: 20 PDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPAALAVGAAGVLGER----AVDGA 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 S V VDDV A ++A A R+ I+ ITGS GKT+TK++L L+ T A Sbjct: 76 SCVV--VDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAPY 133 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 GS N+ +GVPLT+ R+ + + E+G S +G I +LT + P I ++ + AH+ F Sbjct: 134 GSLNSEVGVPLTVCRIDEATRYLVAEMGASGVGHIAYLTKIAPPSIGIVLNVGQAHMGEF 193 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +E IA K E+ E L + G LN DDS + +++ A K I G ++AD++ Sbjct: 194 GSVEAIARTKGELVEALPQDGVAILNVDDSRVRAMASRTQA---KVIL-VGLGEDADYRA 249 Query: 261 R--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + G++ +V +G H N L + + L A+ + Sbjct: 250 TDVSIDEAGRPRYHLTCPLGEA-DVRLALVGEHQVGNSLSVIAAATSLG----LALGDVV 304 Query: 319 VFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVL 375 G R+R +++ G TL++++YNANP SM+AA+ L+ + G RR IA L Sbjct: 305 EAVAGAGAASRWRMEVSEVGGGVTLVNDAYNANPDSMRAALRALAHM---GTSRRSIAAL 361 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIHVHYSETMD 431 G+M E+GE S H + ++ + I + + + + A + V + +D Sbjct: 362 GEMRELGEASHDEHTAVGQLAAELGIDRLVVVGAGAQAIAQGARTAGMTADAVTTVDDID 421 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE-----FPAIQ 472 + + GDVV+ KSS G L + L+EE FP + Sbjct: 422 AAHDVLVEQIAPGDVVLFKSSRDSGLRMLGDRLVEESGTPAFPVTE 467 >gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] Length = 441 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 21/388 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I + V Sbjct: 16 VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPDNERIIL--VS 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A +LA R +I ITG+ GKTT+KE+++ L+ K + +G+YNN +GV Sbjct: 74 DALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL M + + E+G SH +I+ L V P +IT + AHL F E + Sbjct: 134 PRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITNVGRAHLEGFGSFEGVKKT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ +FLN +S +L++ + I ++G+ AD + C Sbjct: 194 KGELYDYLKAHNALLFLN--ESNPDLVEMATER-NFDRIITYGQDDTADVKGEVISCCPF 250 Query: 268 -EQSWMEV------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + SW Q+ EV + IG + NML + I + AL + Sbjct: 251 LKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLHFGVEPHKICHALESY 310 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + + N LI ++YNANP+SMKAAI + ++A+LGDM E Sbjct: 311 TPTNNRSQLIKTKDNN----LIVDAYNANPSSMKAAIENFRLMEVKN---KMAILGDMHE 363 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G+ + H + + + I +VWL G Sbjct: 364 LGDATAEEHQRIVDQIDASKIENVWLVG 391 >gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) [imported] - Buchnera sp. (strain APS) gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 455 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N I ID++ I P F A+ G +D H FI A++K V ++ + P Sbjct: 23 LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V++ AL ++A R ++KA I+AITGS GKT+ KEM L T + I + NN Sbjct: 78 IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IGVP+TL ++ + +G+ ELG S GEI + +++ +P I +I I AHL F + Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 ++ AK+EIF GL+ T+ +N D F K I +S K K ++F K Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317 + + + + +GY N + + + I +DT I + Sbjct: 257 HIHGTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 KR + + LID++YN+N +SM +AI VL ++ G +I V GD Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361 Query: 378 MCEMGELSQSFH 389 M E+GE S +H Sbjct: 362 MAELGENSMMYH 373 >gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] Length = 459 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 220/474 (46%), Gaps = 41/474 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++++A+ G I+ +G G IS D+R I + F A+KG ++G+++ A Q Sbjct: 5 SLEEIVKAVSGE---ILIKGNELGWEYISTDTRKIEEKAIFIALKGERFNGNEYTASASQ 61 Query: 63 KGAGLVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KGA + +V D V I + V V D AL LA + + + ++AITGS G Sbjct: 62 KGAFICIV--DEVHFKKEEIKDYT-TVIKVKDTSEALLDLAKYYKSKLEVKVVAITGSTG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++ L + K + G++NN IG+PL + ++ D + E+GMS+ GEI + Sbjct: 119 KTSTKDLTASVLGAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKM 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 P IA+IT I +H+ N + I AK EI + + + +N +D LK + Sbjct: 179 AKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNLKEE 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + L IKT G KN + + ++ G +++ G H N L+ Sbjct: 239 KYKL-IKT----GLGKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLL 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASM 353 + I + + R GK+ F ++D+SYNA+P SM Sbjct: 294 AIACGRIFKMSFEEIKNGILDLQTTSMRLDMVEGKK---------FNIVDDSYNASPDSM 344 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 KAAI VL I R+ AVLG M E+GE + H ++ + +++ + L F Sbjct: 345 KAAIEVLCNIKSK---RKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVLGSFSKAY 401 Query: 414 LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++ L S ++ ++ + + ++ +L DVV+ K+S S F ++ Sbjct: 402 IEGYLEGSENKNNRGNILEAKDKEEVINYLDINLNSEDVVLFKASRSEHFEEMV 455 >gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 466 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 183/385 (47%), Gaps = 39/385 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V S D+R FFA+KG ++D H ++ +AV +G VVV + I +P Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECECEI---DVPQL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 82 VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 138 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +GVP+TL R+ + + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 139 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 198 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258 F + +A AK EI+ GL++ G +N + + K + + + SF ++D Sbjct: 199 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIDSREMQSFSYIGSDSDS 254 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309 W + +E+ L G + G +G H N L + + A Sbjct: 255 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 309 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ A+KA + +G+ Y +N ID+SYNAN SMK+AISVL + Sbjct: 310 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDSYNANVDSMKSAISVLENYPAY--- 363 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394 RI +GDM E+GE S H ++A+ Sbjct: 364 -RIFAVGDMAELGEESSKCHQEVAD 387 >gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria lactamica ATCC 23970] gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria lactamica ATCC 23970] Length = 452 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 175/363 (48%), Gaps = 23/363 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + AS+ Sbjct: 24 VSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCASLKD----AL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSY 143 VDD L AL LA A R + ITGSVGKTT KEML L A G++ Sbjct: 80 KVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGNDAVLATAGNF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSG 202 NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A+ AH+ F G Sbjct: 140 NNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALANNALRAHIGCGFDG 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +IA AK+EI++GL G + +D+ + K + L T +A+ + K Sbjct: 200 VGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFKTATLNLNTHTFGIDSGDVHAENIVLK 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 C ++ + VV G H N + ++ + L F Sbjct: 260 PLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLGLNDVAEGLKGFSN 315 Query: 323 KEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +G R + G TLID++YNANP SMKAAI VL+++ RI V+GDM E Sbjct: 316 IKG-----RLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGE 366 Query: 381 MGE 383 +GE Sbjct: 367 LGE 369 >gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] Length = 461 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 203/447 (45%), Gaps = 44/447 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A+QKG VV+ A I + V+ Sbjct: 47 VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQKDDPRILL--VE 104 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L G+ NNHIGV Sbjct: 105 DCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNNHIGV 164 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G SH GEI LTH+V P +IT + AHL F E + Sbjct: 165 PLTLLRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITNVGKAHLEGFGSFEGVIRT 224 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS----------KNAD 257 K E+++ L K ++F+ ++ + + A G+ I +G++ K + Sbjct: 225 KGELYDYLRSRKNSSVFIQNENPYLNQI-----AEGLNCI-RYGQTEGLYVSGHVLKCSP 278 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F W E+ EVQ H IG + N+L I + + AL Sbjct: 279 FLAFAW--IGEKGLHEVQT---------HLIGTYNLDNVLAAAAIGRFFGVEEEEISLAL 327 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S + P+ R + N LI ++YNANP SM AA+ + ++ +LGD Sbjct: 328 SSYIPQNNRSQLEETPNNH----LIVDAYNANPTSMMAALENFRHVEA---AHKMVILGD 380 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S+ H + + L N V L G ++ + + V D L + Sbjct: 381 MKELGSSSKEEHAKIVDFLDTCNFEKVILVGPEFGCIQTSYEKYPDV------DTLIDHL 434 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 +S G ++VK SNS RL L Sbjct: 435 KSDCPIGFYILVKGSNSMKLSRLPEFL 461 >gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58] gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58] Length = 1025 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 122/398 (30%), Positives = 183/398 (45%), Gaps = 15/398 (3%) Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 T + +PV V + A+ L AR + +I +TGS GKTT ML AL Sbjct: 626 TSAPQAFADAELPVLSVRNNGDAVLALGRYARSMMRGKLIGVTGSAGKTTMVAMLAQALR 685 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 K + N G+ LA + D + EL +G ++ L RP +AV T Sbjct: 686 PWGKVGTSRLNANLPHGIGWNLASIAWDTPHVVMELA---IGRMKQNAALARPDVAVFTN 742 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSF 250 IA AHL + +A K+ IFEG+ T LN D EL + ++ A+ + I S+ Sbjct: 743 IAAAHLEFHHDLATVARRKSAIFEGMAAGATAILNAD--MAELARVRALAMARELNIVSY 800 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G++ AD +L K +++E + M G HMA N L L + L+ Sbjct: 801 GEAPQADIRLISRKG----NFLEAETPSGRMGYHLATPGRHMAVNSLAVLATLHALSLQP 856 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + AL F P GRG + LIDE+YNANPASM AA+ +L GR Sbjct: 857 HRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNANPASMAAALELLGA---QAGGR 913 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSET 429 R+A+LG+M E+G ++ +H DLA + + +I V G + D PR +H + Sbjct: 914 RVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVGPLYARFCADLPPRHRGIH-APD 972 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L + DGD+V+VK S+ G + ++ + E Sbjct: 973 LATLHALWPELIRDGDIVLVKGSHGSGVHEIVRAIQAE 1010 >gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] Length = 478 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 133/466 (28%), Positives = 220/466 (47%), Gaps = 62/466 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87 + IDSR I E F A+KG DGH F+ A +KGA +V+ + + GS + Sbjct: 38 VVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARY 97 Query: 88 --VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D A+ +LA RL+ +I I GS GKTTTKEM L + + G++NN Sbjct: 98 LVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLRARYSVHMSEGNFNN 157 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL + + + E+G++H GE+ L + P ++T I HL ++ Sbjct: 158 HLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTHGMLTNIGHEHLEFLRDLDG 217 Query: 206 IASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A+A+ ++ ++K+ G +F+N +DS + A GI + +G + Sbjct: 218 VANAETALYRYVQKSGGVVFVNREDS-----RLTEAAAGIPSTVGYGIALEG-------- 264 Query: 265 QCSEQSWME-VQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-F 320 E W E +++ G+++ + G N +TLG +V A+ A +V F Sbjct: 265 ---EGFWAEDIRMDNLGRALFTLCSSAG-----NAPVTLGFAG--RHNVSNAVAAATVGF 314 Query: 321 H----------------PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 H P+EG KR G T+++++YNANP S++ A+ +L ++ Sbjct: 315 HFGLTQEEIAGGLERLKPEEGW-KRLEFQ-RAGGITIVNDTYNANPDSVRNALDLLCELP 372 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH 423 G+R+AV+GDM E+G +S H E + Y S L F+ + AL R+ Sbjct: 373 V--TGKRVAVIGDMLELGGVSSPEH----EEIGRYAASLDGLDAFYTFGEQAALCCRTAG 426 Query: 424 V----HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + H+ + + L + SL GDV+++K S R+ L+ Sbjct: 427 MKCAGHFMDHGE-LQHLLHESLSPGDVLLLKGSRGMKLERVAEGLM 471 >gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 458 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 113/372 (30%), Positives = 178/372 (47%), Gaps = 29/372 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +N I ID++ I P F A+ G +D H FI A++K V ++ + P Sbjct: 23 LINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHV-----PY 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V++ AL ++A R ++KA I+AITGS GKT+ KEM L T + I + NN Sbjct: 78 IIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNGNTISTIDNLNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IGVP+TL ++ + +G+ ELG S GEI + +++ +P I +I I AHL F + Sbjct: 138 NIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSLLG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 ++ AK+EIF GL+ T+ +N D F K I +S K K ++F K Sbjct: 198 VSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNI-LFFSIKKKKYSNFFCSNIKI 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQN--------MLMTLGIVSILTADVDTAIKAL 317 + + + + +GY N + + + I +DT I + Sbjct: 257 HIHGTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS- 315 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 KR + + LID++YN+N +SM +AI VL ++ G +I V GD Sbjct: 316 ----------KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERM----PGYKILVTGD 361 Query: 378 MCEMGELSQSFH 389 M E+GE S +H Sbjct: 362 MAELGENSMMYH 373 >gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 453 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 116/389 (29%), Positives = 183/389 (47%), Gaps = 14/389 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DL + + I + GI+IDSR + + F G + DGH+FI A +KGA Sbjct: 7 DLEKILNAKKANITSNVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEKGAAAS 66 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + D S + + V+D A+ LA A IAITGS GKTTTK+++T Sbjct: 67 LSLKDDFVSENN----IIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKTTTKDIITS 122 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS+ K + G++NN +GVP+T+ P D + + E+G G++ FL+ LV P V Sbjct: 123 VLSTKYKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADDFGQLDFLSKLVEPDYTV 182 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I +H+ F E IA AK EI G++K G N D+ + L S Sbjct: 183 ITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGDEVLIKTLVDSSEINAT---- 238 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S G++ D L + ++ ++ +L + G H N++ I S + Sbjct: 239 SCGENSYNDIILESYTITRDK--IDFKLNISDEQYFTKLKGKHNLYNIMFATAIASKIGL 296 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + KA+ + E G R + + +I+++YNA+P SMKA + V+S Sbjct: 297 TNEEIHKAIE--NTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVVSSYDDF-- 352 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + VLG M E+G ++H ++ E +S Sbjct: 353 DYKTLVLGSMFELGPNEVNYHGEVGEYIS 381 >gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135] gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135] Length = 430 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 206/447 (46%), Gaps = 32/447 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 NG++ DSR F A+KG ++G+ F ++ +G VV+ AS + I + Sbjct: 13 CNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQYASPENPYILL- 71 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ L L +LA R + ++ +TG+ GKTTTKE++ L G++NNH Sbjct: 72 -VENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNFNNH 130 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + + + E+G +H GEI+ L H+ P +IT + AHL F E + Sbjct: 131 IGVPLTLLRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCGIITNVGKAHLEGFGSFEGV 190 Query: 207 ASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 K E+++ L + G TIF+ ++ + A G+ + +G++ D Sbjct: 191 IRTKGELYDYLREKGNATIFIQNENPHLNKI-----AEGLNCV-RYGQTSGLDVS-GTVL 243 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 CS + G S EV H IG + N L + I + ALS + P+ Sbjct: 244 SCSPFLHLGWTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVEDTQICHALSSYVPQN 303 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + N TLI ++YNANP SM AA+ Q+ ++A+LGDM E+GE Sbjct: 304 NRSQLVQTESN----TLIVDAYNANPTSMMAALVNFRQMEAE---HKVAILGDMKELGEG 356 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S+ H + + L+ V L G L + +V E M + + V Sbjct: 357 SREEHQKVVDFLNECQFERVILVGPEFAGLSASFEHYENVKEVEAM------LAAHPVQH 410 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFPAI 471 V++K SNS + L E PA Sbjct: 411 CCVLIKGSNS--------MKLSELPAC 429 >gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Gemmatimonas aurantiaca T-27] gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Gemmatimonas aurantiaca T-27] Length = 474 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 126/396 (31%), Positives = 198/396 (50%), Gaps = 34/396 (8%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WTF + A+ G S+ PQ GIS D+R IA + F A++G +D HDF+ A Sbjct: 26 WTFERVAAALGTGPSM---PQPLA-GISTDTRRIARGDVFVALRGDRFDAHDFLATAKDA 81 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV +D ++G L +P + V D L AL +LA R +IA+ GS GKT+TK Sbjct: 82 GAAAFVV-SDATRAVG-LGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTK 139 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L ALS + +A G+ NN IGVPLTL +P D + ELG + GE+ L + Sbjct: 140 ELLKAALSGTFEVHATTGNLNNLIGVPLTLLAIPPHADIAVVELGTNAPGEVATLRAMSA 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AV+T+I HL + + + ++F G+ + + S +A++ Sbjct: 200 PDVAVLTSIGEEHLEGLGDLAGVLREECDVFPGVRLAIIPVAHPEVSPMASERAEA---- 255 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMT 299 + + G + +AD +W E + W +V + VH + G H A N ++ Sbjct: 256 ---VVTAGLT-DADVAPEQWGLDDEGRPWFDV-------DGVHFTLPLRGAHQAANAMLA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +++A ++ RG G T+I+++YNANP SM+AA+++ Sbjct: 305 VAAARACGVPLESAAAGMAAMPVPNMRGVWETI----GQTTVINDAYNANPPSMRAALAL 360 Query: 360 LSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAE 394 L ++ GEGR R+A LG M E+G + H D+A Sbjct: 361 LDRV---GEGRQRVAFLGTMRELGAQADVQHDDIAR 393 >gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] Length = 446 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 129/452 (28%), Positives = 212/452 (46%), Gaps = 38/452 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G++F A++KG V+ D V+ Sbjct: 16 VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVI--DQKEYQIQQDERYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + II ITG+ GKTTTKE+L L+ + G++NN IGV Sbjct: 74 DCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L +V P A+IT + AHL F E + Sbjct: 134 PKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQ 265 KAE+++ +E G +F+N D+ + + ++H + I YS + +Q K Sbjct: 194 KAELYDYMEVNKPNGKVFINQDNPHLQEM-FQAHCPHVHRISYSQTQQTGVSYQ---GKI 249 Query: 266 CSEQSWMEVQLQ-----------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 CS ++ Q + + EV H +G + N+L + I L Sbjct: 250 CSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHYLGVQPHEIN 309 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRI 372 AL+ + P R + N LI ++YNANP SM+AA+ + Q++P ++ Sbjct: 310 HALTHYTPSNNRSQLEVTKHN----NLIVDAYNANPTSMEAALVNFAQMQVAP-----KM 360 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 A+LGDM E+GE+S + H + +L+ I +WL G + + ++ Sbjct: 361 AILGDMRELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQK------YKNIEE 414 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + I+ G +++K SN ++L LL Sbjct: 415 VKETIRQQQPQGFYILIKGSNGIKLFQLPELL 446 >gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] Length = 464 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 172/371 (46%), Gaps = 22/371 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+RS+ P + A++G +DGHDF A +GA ++V + + +P Sbjct: 24 IDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLL-----PIELPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIG 141 V D AL K+A + + AITGS GKT+ K +L L + K YA G Sbjct: 79 LVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVKSLLLSILQQVAQHAHKVVYANPG 138 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P D D+ ++E+G G+I +LT + RP A++ IAPAHL Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258 + +A K I+ L G +N DD++ + H +G + +G AD Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADI 256 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + ++ + + VV G H N L + D+ L+ Sbjct: 257 TARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNALAAASLALAAGVDLALIAAGLA 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GR ++ L G L+D+SYNANP S+ AAI L+ G VLGDM Sbjct: 317 EAQPVPGRQIAHQ--LRNG-AVLVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369 Query: 379 CEMGELSQSFH 389 E+G +++ H Sbjct: 370 RELGPDAEALH 380 >gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. ND132] gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans ND132] Length = 462 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 126/455 (27%), Positives = 198/455 (43%), Gaps = 19/455 (4%) Query: 21 IVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + +GF V + DSR++ P + FF I G ++DGH+F A KGA VV + Sbjct: 15 LADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALAAAKGACAVVASR---- 70 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 IG + PV V D AL +LA R A ++A+TG+ GKTT KEML S T Sbjct: 71 MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKTTVKEMLFAVASQKFAT 130 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 ++NN IG+P ++ + D + I ELG+S G++ L + P +A+IT + P H Sbjct: 131 AKNYRNFNNQIGLPTSMLKASADQELWIMELGISRRGDMEELAPVASPDLAIITNVGPGH 190 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 L +ASAK + L + G ++ D + L A + +S + Sbjct: 191 LEGLGNEAGVASAKTALLRYLRQGGRAVISRD--YPLLWNAALELVDAPVGFSGRDDAES 248 Query: 257 DFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 DF + + ++ E+ G H A+N+ L D + Sbjct: 249 DFSAAFLGALPDGRGRFRLRTPDGDGELTAPFCGRHYAENLACVAAAAHCLGLTRDDVVG 308 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + +R+ C G T+ID++YNANP SM A+ +++ GE + VL Sbjct: 309 GVQAMAADP---QRF-CRKIGGGITVIDDTYNANPLSMANALRTARELA--GERPLVLVL 362 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G + H +L V+ + V+ G H L ++ + + +D Sbjct: 363 GDMRELGAEAVLRHEELGRVIRETAPAMVFYKGDHFLDVERGF--GGFMRRAGDVDEFLE 420 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + V+VK S S G N L E A Sbjct: 421 AWRELCISEGAVLVKGSRSLGMELYANALCREVNA 455 >gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] Length = 452 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 201/440 (45%), Gaps = 26/440 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+ IDSR + + I G DGH F ++ GA + + D V PV Sbjct: 27 IHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQTIEDGALISLWQKDHVPY---PDFPVI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A+ L+ A +I +TGS GKT+ K+ML S KKT G+ N+ Sbjct: 84 LVDDTLRAMQDLSKAYLDELHPLVIGVTGSNGKTSCKDMLYSIFSQEKKTQKTQGNRNSE 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ D++ I E+GM + GEI LT + +P I+VIT+I AH+ N G +I Sbjct: 144 IGLPLTIFDFDEDIEVAILEMGMENKGEITQLTSIAQPDISVITSIGSAHMENLGGKLQI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SKNADFQLRK 262 A AK EI EG ++ G NY+ + + K + SFG+ S +D + K Sbjct: 204 AQAKCEILEGTKENGLFLYNYESKEIQEVLCTLDTEN-KNVVSFGQGGDVSITSDIEYDK 262 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + ++ + ++ G A N L + I ++ + L Sbjct: 263 EGIVFKCNILDAPVHLRAF-------GDFQAMNALPCIYIAKACHLKEESILNGLKNLEM 315 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + R + ++ + ++D++Y +NP S KAAI L ++ + + IA++ DM ++G Sbjct: 316 TKMRTQLI--SVKNAY--ILDDTYKSNPESAKAAIDTLMELPAN---KHIAIISDMLDLG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H D+ + ++ +G L + + ET D ++ + L Sbjct: 369 SEEKQLHYDVGVYAKEKGVDELYCTG----PLSKETADGFNGKWYETKDEIYEACKPLLD 424 Query: 443 DGDVVVVKSSNSCGFYRLIN 462 ++++K S + L++ Sbjct: 425 KDCIIMIKGSRAMKMDTLVD 444 >gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] Length = 470 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 133/460 (28%), Positives = 208/460 (45%), Gaps = 33/460 (7%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V+G + IDSR AP F A++G DGHDF AV+ GA V+ + + + Sbjct: 23 PTDTVDGPVVIDSREAAPGSLFVALRGSRVDGHDFAEAAVRAGATAVLCSR----PVDAP 78 Query: 82 SIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + V G DD + A AV A L A II +TGS GKTTTK++L L I T A Sbjct: 79 HLLVDGGDDAVVAALAKLARAVVAEL-PDADIIGVTGSSGKTTTKDLLAQTLQRIGPTVA 137 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 GS+NN IG PLT+ R F E+ +G I L + P I V+ + AH+ Sbjct: 138 PPGSFNNEIGHPLTVLRADQTTRFIALEVAARGVGHIAHLCQIAPPRIGVVLNVGSAHMG 197 Query: 199 NFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 F + IA AK E+ E L + G LN DD + +++ A + S+G + + Sbjct: 198 EFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDDAVIGMASRTAA----RVVSYGLAPD 253 Query: 256 ADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 AD + + + + + V +G H N L ++ L V Sbjct: 254 ADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQVHNALAVAAVLRELGEPVTAIA 313 Query: 315 KALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371 ALS P R+R + + T+++++YNANP SM AA+ L+ ++ GRR Sbjct: 314 AALSEAGPV----SRWRMEVTERPDGVTIVNDAYNANPESMSAALRTLATLA---SGRRA 366 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-- 429 AVLG M E+G ++ H + +++ + + G ++ D S+ ET Sbjct: 367 FAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITVGEQAASIADGAA-SVADWKGETVT 425 Query: 430 ---MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ L D+V++K S G ++ L++ Sbjct: 426 VADVTEAVAVLKERLRPKDIVMLKGSRVAGLEQVAEQLID 465 >gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. RS9917] gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. RS9917] Length = 460 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 211/449 (46%), Gaps = 43/449 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85 + DSR + F + G +DGH F++ A + A VV T + S PV Sbjct: 30 VCTDSRQLVAGAFFVPLVGERFDGHRFLVEAAARPAQAAVVAT-------AWSDPVPPGL 82 Query: 86 --FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + V+D L A LA A R + ++A+TGS GKTTT+E++ AL+ + A G+ Sbjct: 83 LHWRVNDTLEAYQMLARAHRRQLPCPVVAVTGSAGKTTTRELIRAALAPLGVVQASSGNN 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLT+ + + + E+GM GEI L+ P IAVIT I AH+ Sbjct: 143 NNDVGVPLTVLGVGPEHGAAVIEMGMRGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSR 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA+AK EI L G + + D E A+ A ++ + G + + +R Sbjct: 203 EAIAAAKCEITASLAADGLVVIPAGDPLLEAALAQCWAGRVRRVALEGDALES---VRPE 259 Query: 264 KQCSEQSWMEV-----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++V +L+G ++ + G H A+N+L+ L + L + ++ L Sbjct: 260 APVDRLGVVDVCAGVLRLEGLAIRLPLE--GRHNARNLLLALTVAQELGVPL-AQLQDLK 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V P GR +R A Q ++DE+YNA+P ++ AA+ +L+ H GRR AVLG M Sbjct: 317 VAVPG-GRNRRIELAGIQ----VLDETYNASPEAVFAALELLA----HQAGRRFAVLGAM 367 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSE-TMDG 432 E+G+ S + H +AE + + L + LPR V E + Sbjct: 368 LELGDQSVALHRQVAERAVACGLDGLVLVMAGAEADAMAEAAAPLPRLQRVDTPEQAVPV 427 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 L ++QS GD +++K+S RL+ Sbjct: 428 LAAWLQS----GDTLLLKASRGVALERLL 452 >gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. ORS278] gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase, D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp. ORS278] Length = 458 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 211/467 (45%), Gaps = 50/467 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----------PHYD 52 LWT + +A+ G P+ ++ ++ DSR++ P F A+ G D Sbjct: 5 LWTVAEAARAL--GLAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRD 62 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATII 111 G +F +A Q GA ++V I +++P V D L L LA AAR R +I Sbjct: 63 GWEFAANAEQAGAVAMIVPH----RIEGVTVPQLVVTDTLIDGLWALARAARSRFHGPVI 118 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 +TGS GKT+TKE + ++ A S+NN GVPLTL + E+GM+ Sbjct: 119 GLTGSAGKTSTKEFI----AAYPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGMNQ 174 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI LT L +P +A++ + P HL +E I K I GL G + L D + Sbjct: 175 KGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGLPSGGILVLPADLAA 234 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSW-MEVQLQGKSMEVVHHGIG 289 E KTI FG D ++R+ + +SW + + G S+ Sbjct: 235 PEWSG--------KTIR-FG----GDAEVRELSHTARGESWDVTADIAGCSVNFALTPGA 281 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L L V+ D L GRG G LID+S+N N Sbjct: 282 PHRLHNALAALASVAAAGLDPALLAPELGEVGIMTGRGVEQTV----GDIVLIDDSFNGN 337 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PASM AA+ L Q P GRRIAV+GDM E+G+ + ++H + V L I V+ G Sbjct: 338 PASMAAALDGL-QARPV-RGRRIAVIGDMLELGDEAPAYHAKM--VGHLAGIDGVFCVGP 393 Query: 410 HVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSN 453 + L +ALP+ + + E T+D + + L GDVVVVK S Sbjct: 394 LMRHLFEALPQGRRLGWHEDPVTLDP--KQVAALLAPGDVVVVKGSK 438 >gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 436 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 213/448 (47%), Gaps = 41/448 (9%) Query: 30 ISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I+ DSR I P+++ F A++G ++DG+ F A++KG +V+ + V Sbjct: 17 ITTDSR-ICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQKYQKPDDSRYIL--V 73 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L +LA R R II ITG+ GKTTTKE+++ L G++NN +G Sbjct: 74 DNCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGNFNNDVG 133 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + E+G SH G+I+ L +V P +IT + AHL F E + Sbjct: 134 VPKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNVGKAHLQGFGSFEGVIR 193 Query: 209 AKAEIFEGLE-KTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWK 264 K E+++ L K G +F+N D+ + L S L T+ +GK + + ++ + Sbjct: 194 TKGELYDYLRAKQGGNKVFINADNPY---LMNISQGL---TLIKYGKRDDCELSVKGEVT 247 Query: 265 QCS---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALS 318 CS + W Q G EV IG + NML I I AD+D +ALS Sbjct: 248 GCSPFLDFRWYNTQ-AGHWNEVHTRMIGAYNIDNMLAAACIGLHFGISEADID---EALS 303 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLG 376 + P R + N+ LI ++YNANP SM AAI +SP +IA+LG Sbjct: 304 KYTPSNNRSQLTVTNDNK----LIVDAYNANPTSMHAAIENFKAMHVSP-----KIAILG 354 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G S+ H +A+ L + +VWL G K R H ++ + Sbjct: 355 DMRELGNASKEEHQRIADELKTADFDNVWLVGEEFYNTKSGF-RKFH-----NIEEVKTA 408 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q++ G +++K SN +L LL Sbjct: 409 LQTNKPKGCYILIKGSNGLHLSQLPELL 436 >gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 207/467 (44%), Gaps = 31/467 (6%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 Q H I + IDSR + F A G H DGHD+ AV Sbjct: 16 QAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAERAVAA-------GAVA 68 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 V + + +P VDDV AL LA A R ++A+TGS GKT+TK+++ L Sbjct: 69 VLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLDRHA 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T GS NN IG+PLT R + + E+G +G IR+LT L P I ++ + Sbjct: 129 PTVWTPGSLNNEIGLPLTALRASDETRHLVLEMGARGIGHIRYLTGLTPPRIGLVLNVGT 188 Query: 195 AHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 AH+ F G E+IA AK E+ E L E G LN DD + +++ A + FG Sbjct: 189 AHIGEFGGREQIAEAKGELVEALPAAEDGGVAVLNADDPLVRAMASRTKA----RVTLFG 244 Query: 252 KSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 ++ A + + Q + +V G H N L + L V Sbjct: 245 EADEAAVRAENVRLTENGQPSFRLHTPTGCSDVTLRLYGEHHVSNALAAAAVAHELGMPV 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + ALS + G R+R + + T+++++YNANP SM+AA+ L+ + + Sbjct: 305 EEIATALS----EAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRAALRALAAMGRAAQ 360 Query: 369 GRRI---AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP 419 R AVLG M E+G+ S H + + N+S + G + A + Sbjct: 361 ARGARTWAVLGKMAELGDASLVEHDAVGRLAVRLNVSKLVAVGDREASWLQLGAYNEGSW 420 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH S+ + L ++S L GDVV+VK+S S G ++ LL+ Sbjct: 421 GEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVGLEQVALALLD 466 >gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 459 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 178/372 (47%), Gaps = 41/372 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V+ I DSR I + FFA+ G +DGHDF + GA VV+ + A + G+L + Sbjct: 28 VSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDVLAAGAAAAVVSREDCAGLRGALQVA- 86 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 D L AL LA A R + ITGS GKTT KEML L + A G+ Sbjct: 87 ----DTLEALQTLAQAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGEEAVLATAGN 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFS 201 NNHIG+PLTL ++ + + E+GM+H GE+ LT + RP A++ AH+ F Sbjct: 143 LNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTRIARPDAALVNNALRAHVGCGFD 202 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADF 258 G +IA AK+EI++GL G + +D+ E+ + S A +T FG K +A Sbjct: 203 GTADIARAKSEIYQGLGADGLALIPCEDANAEIFQTASAAHKQQT---FGVDKGGVHARN 259 Query: 259 QLRKWKQC-------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + K C SE + + + + G+ L TL VS Sbjct: 260 IVLKPLSCAFDLVCGSETASVSLPVPGRHNVHNAVAAAALALAAGL-TLNEVS------- 311 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 L F +GR K R TLID++YNANP SMKAAI VL+ + R Sbjct: 312 ---DGLKDFSNIKGRLKVKRGIKGA---TLIDDTYNANPDSMKAAIDVLAALP----APR 361 Query: 372 IAVLGDMCEMGE 383 + V+GDM E+GE Sbjct: 362 VFVMGDMGELGE 373 >gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] Length = 453 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 184/393 (46%), Gaps = 14/393 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + DL Q + I IV + GI+IDSR + + F G + DGH++I A +KG Sbjct: 3 YLVKDLEQILNAKKINIVENKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + S + + V+D A+ LA A IIAITGS GKTTTK+ Sbjct: 63 AAASLSLKEDFTSDNN----IIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGKTTTKD 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L + K + G++NN +GVP+T+ P D + + E+G G++ FL+ LV P Sbjct: 119 IITGLLETKFKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADGFGQLDFLSKLVEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 VIT I +H+ F E IA AK EI G++K G N D+ + L KS+ +G Sbjct: 179 DYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKDGFFVYNGDEVLLKDLVDKSN-IGA 237 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S G++ + L + + ++ L + G H N++ I Sbjct: 238 T---SCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKLK--GKHNLFNIMFATAIAE 292 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D KA+ E R +I+++YNA+P SMKA++ V+S Sbjct: 293 KLGLSIDEIRKAIE--KTSEITHMRLESIPYGKDSLIINDAYNASPTSMKASVDVVSGFD 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + VLG M E+G +H ++ E +S Sbjct: 351 DF--DYKTLVLGSMFELGSKEVQYHSEVGEYIS 381 >gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 458 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 120/390 (30%), Positives = 186/390 (47%), Gaps = 26/390 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A+ KG V++ I + VD Sbjct: 34 VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEKEYDDEADDRIIL--VD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTTTKE+L+ LS G++NN +GV Sbjct: 92 DCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNNDVGV 151 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ D + E+G SH+G+I+ L V P +IT + AHL F E + A Sbjct: 152 PKTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNVGRAHLQGFGSFEGVMQA 211 Query: 210 KAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----------F 258 K E+++ L+ +FLN + E L +H ++ I S+G+ A F Sbjct: 212 KGELYDYLKACHAPVFLNTSN---EHLVDMAHQRRLERIISYGQDDGAQVWGEVMSCDPF 268 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +W + +Q EV H +G + N+L + + + +AL Sbjct: 269 LKLQWGASHAEHHSPTSMQ----EVSTHLVGAYNLDNVLAAITVGLHFGVSEEQIRQALE 324 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + + N+ LI ++YNANP SM AAI ++S R+A+LGDM Sbjct: 325 SYTPSNNRSQFVETSRNR----LIIDAYNANPTSMAAAIDNFERMSM--TQPRMAILGDM 378 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+GE+S+ H +A+ L +I +WL G Sbjct: 379 RELGEVSEEEHQKIADSLKASDIDTIWLVG 408 >gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] Length = 468 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/411 (28%), Positives = 183/411 (44%), Gaps = 19/411 (4%) Query: 4 LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T HD I G + IG F +S DSR++ + F A+KG +D HDF+ Sbjct: 3 MLTLHDAAALIPGATVIGDGSVAFAR-VSTDSRTVGEGDLFVALKGERFDAHDFLAEVAA 61 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA + +V+ G L +P D AL LA R R ++A+TGS GKTT Sbjct: 62 RGA-----SAALVSRAGVLPGLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTT 116 Query: 122 TKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ + G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 117 VKEMIASVFAAAVGQDARLSTAGNFNNDIGLPLTLLRLAPAHRLAVIELGMNHPGETGTL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P IA++ H + +E +A A + L G DD + + + Sbjct: 177 ARIAAPTIALVNNAQREHQEFMATVEAVALEHASVIHALGPDGVAVFPADDRYAGIWRVA 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I F + + ++ + + +EV +G H A+N L Sbjct: 237 ATG---NRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357 + D L F P +GR + R +L LID++YNANP SM+AAI Sbjct: 294 ATAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAI 353 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VL+Q + R+ V+G+M E+G+ +FH ++ I ++ +G Sbjct: 354 DVLAQCA----APRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATG 400 >gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 464 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 183/385 (47%), Gaps = 41/385 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V S D+R FFA+KG ++D H ++ +AV +G VVV + + +P Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVEREC-----EIDVPQL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------- 139 V D AL +LA + + +A+TGS GKTT KEM L +K AC Sbjct: 80 VVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKIL---QKMTACEQEVLYT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +GVP+TL R+ + + ELG +H+GEI + T + +P ++ +A AHL Sbjct: 137 FGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEG 196 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADF 258 F + +A AK EI+ GL++ G +N + + K + + + SF ++D Sbjct: 197 FGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK----EIDSREMQSFSYIGSDSDS 252 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEV-VHHG--------IGYHMAQNMLMTLGIVSILTAD 309 W + +E+ L G + G +G H N L + + A Sbjct: 253 YADYWAED-----VELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSNALAATSLAMSVGAT 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ A+KA + +G+ Y +N ID+SYNAN SMK+AISVL + Sbjct: 308 LE-AVKA-GLEQRSMVKGRLYPVQINDHCL-FIDDSYNANVDSMKSAISVLENYPAY--- 361 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAE 394 RI +GDM E+GE S H ++A+ Sbjct: 362 -RIFAVGDMAELGEESSKCHQEVAD 385 >gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens] Length = 345 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 27/345 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPV 85 + G+ DSR I F + G +DGH + ++ GAG + D A G++ + Sbjct: 8 IQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAGAVIV-- 65 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL LA A ++ ITGS GKTTTK+M+ LS+ K + G++NN Sbjct: 66 --VDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKVHKTGGNFNN 123 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ MP D + + E+GMS EI L+ + RP +AVIT I AHL E Sbjct: 124 HIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSRHE 183 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL---GIKTIYSFG-KSKNADF--- 258 IA AK EI G++ G + + D+ ++ ++ + G+ T ++FG N D+ Sbjct: 184 IARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGT-FTFGLDHSNDDYPTG 242 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIK 315 + K S + + +G + + +G H N L L + I ++ T + Sbjct: 243 MMFHSKGIIFTSLLHPE-EGLDLPL----LGQHNVINCLAALAVARHFGITEENIRTGLT 297 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + G R + T+++++YNA+P SMKAAI L Sbjct: 298 GLHL------TGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDAL 336 >gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 209/450 (46%), Gaps = 37/450 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ISIDSR+ + F AIKG ++DGH FI + KG VV+ M + S + P + V Sbjct: 30 NISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVIKKGMQRLLPS-NFPYWAV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D A KLA+ R + I+AITGSVGKTTTKEM+ L+ + + ++NN IG Sbjct: 89 NDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNEIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 V LT+ ++ + E+GM LG+I L+ P IAVIT I AH+ + I Sbjct: 149 VGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITH 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKA--KSHALGIKTIYSFGKSK--NADFQLRKW 263 AK EI + L G + + +D F E LK K + +K + + + D LR + Sbjct: 209 AKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGF 268 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+++ + ++ + E+ G+H A N L + L D + K F Sbjct: 269 YNPSKKT---ILIEENTFEISLE--GFHNASNFLFAYAVSKELGIDFASFNKF--DFVSF 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR K + T+ DESYNA+P S+KA I L + P + + G M E+G+ Sbjct: 322 GGRNKILKSLKT----TIYDESYNASPESVKACIKNLLE-KPRN---KFFIFGSMQELGK 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF------- 436 S+ +H E+ +L N S + L + + + +Y + + Sbjct: 374 ESEKYH---KEIFNLINNSDIE----KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVP 426 Query: 437 --IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I S GD +++K S ++I L+ Sbjct: 427 QEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacter tundripaludum SV96] gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacter tundripaludum SV96] Length = 519 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 113/396 (28%), Positives = 185/396 (46%), Gaps = 26/396 (6%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +IP VDD AL +LA R ++ +++ ITGS GKTT KEM+ LS T G Sbjct: 139 TIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGKTTVKEMVAAILSVNADTLFTQG 198 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IGVPLTL R+ + + E+G +H GEI + + + +A+IT + AH+ F Sbjct: 199 NLNNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTSQYAQADVAIITNVGAAHIEGFG 258 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 I+ +A AK EI + L++ G LN DD++F+ K+ + G + + SFG + AD Sbjct: 259 SIDGVAKAKGEIIQTLKQDGVAVLNRDDAYFDYWKSIA---GTRKVISFGIDERADVTAH 315 Query: 262 KWK----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 K + + E+ + V G H N L L D+ + L Sbjct: 316 SVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVNALAAATACLALDTDLQQIKQGL 375 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 P GR + L +ID++YNAN AS+KA + VL+ +G+R VLG Sbjct: 376 ESVKPVTGRLQPLVSRLGN---IVIDDTYNANSASLKAGLDVLANC----DGKRWLVLGA 428 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDG 432 E+G S H + E++ + +LA+ ++ + + +T + Sbjct: 429 FGELGPDSPKIHEQMGELIKSSGV-------VRLLAVGSDAGNTVKIFGEGATFFDTQND 481 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L ++ L + +++K S + ++ L+E F Sbjct: 482 LIEMLKQELKGDEAILIKGSRAQRMENVVAALVENF 517 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +QG +G ++ +SID+R+I P + + AIKG ++DG++F+ A Q GA Sbjct: 5 LSEIAACVQGKLVG--EDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEAEQAGAV 62 Query: 67 LVVVNTDMVAS 77 +V+ + A+ Sbjct: 63 AAIVHQGITAT 73 >gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus] Length = 463 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 187/395 (47%), Gaps = 53/395 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P F A G DGHDF V GA V+ D P V+ Sbjct: 30 VEYDSRKVVPGGLFVAFPGERVDGHDFASAVVAAGAAGVLGTRDT-------GEPGVVVE 82 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D L A+ LA V ARL + T++ +TGS GKTTTK+ + LS + T A GS NN + Sbjct: 83 DSLRAVATLAHEVVARL-PELTVVGLTGSSGKTTTKDYIGQLLSRLGPTVALPGSLNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G P T+ + D F + E+G +G IR LT + RP I V+ I AH+ F +E A Sbjct: 142 GFPYTVLQAGADTRFLVLEMGARGVGHIRHLTGIARPSIGVVLNIGAAHIGEFGSVEGTA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E+ E L +TG LN DD+ + +++ A + + G++ A QLR Sbjct: 202 LAKGELVEALPQTGVAVLNADDALVSAMASRTGA----RVVTVGEAAGA--QLRA----- 250 Query: 268 EQSWMEVQLQ--GKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTA-----DV 310 ++V L G++ V+ HG G H N L + LTA D+ Sbjct: 251 ----VDVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANSLSAAAVA--LTAGLAFDDL 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 TA+ +S+ +R T+ID+SYNANP+S AA+ L+ +S GR Sbjct: 305 VTALSEMSMVSD-----RRMDVFERPDGVTVIDDSYNANPSSTAAALRALAAMSA---GR 356 Query: 371 R-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 R AVLG M E+GE S H ++ + + + + Sbjct: 357 RTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRL 391 >gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 468 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 145/465 (31%), Positives = 215/465 (46%), Gaps = 39/465 (8%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P NG + DSR AP + A +G + DGHD++ A + GA +V +V Sbjct: 19 PDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCALVER-VVDLSDCP 77 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137 I V D GAL LA A LR+ I +A+TGSVGKTTTK++L LS+ T Sbjct: 78 PITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTTKDLLLQVLSADAPTV 137 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A S+NN +G+PLT+ + E+G S G I +LT + P +A+ + AH+ Sbjct: 138 APRLSFNNEVGLPLTVLTADESTRHLVLEMGASGPGHIAYLTRIAPPDVAIELVVGHAHM 197 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F + +A AKAE+ EG + T LN DD + ++ ++ S G + Sbjct: 198 GGFGSVAGVAEAKAELIEGSRQGATAVLNADDPNVAAMAPRAKGPVVRFSPS-GVGADVV 256 Query: 258 FQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + S+ +G+ S+ HH A LG+ L A + Sbjct: 257 AEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAAAGARALGLGLPLIARALS 316 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR- 371 +ALS H + RG R + TLID+SYNAN SM+AA++ L I G+GRR Sbjct: 317 GARALS-PHRMDVRGLR----IGAVPLTLIDDSYNANIDSMRAAVAALEAI---GKGRRT 368 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSI 422 IAVL +M E+GE S + H + +LS L +H + G ++P + Sbjct: 369 IAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHYYSEGAA------SVPDRV 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L D VV+VK S + +++ + LLEE Sbjct: 423 LV---EDPGAALAAVLDRLTDDCVVLVKGSYNSYSWQVADGLLEE 464 >gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235] gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235] Length = 435 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 113/396 (28%), Positives = 179/396 (45%), Gaps = 17/396 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR I E F A+K DGHDF+ A + GA +V+ + +P V Sbjct: 2 GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDRFQE----EIELPQLVV 57 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+V AL LA R +A ++ ITGS GKTT KE+L LS T + G+ NN IG Sbjct: 58 DEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVLACLLSGFA-TLSTRGNLNNLIG 116 Query: 149 VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 VP+++ R +F + E G+S GE+ L + P ++T + PAHL + +E +A Sbjct: 117 VPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWGIVTALGPAHLEDLGTVENVA 176 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K ++F+G + +F + A L +K F + C Sbjct: 177 REKGKLFQG-SRLRRVFAGESCEPYLSDMAAPRVLLVKQDPYLSVEWAFRFSSEAGRTCL 235 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 EQ ++ G + G+G +A N+ + L + +VD AL + P + R Sbjct: 236 EQ-----RIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQLRSALGSWKPSQMRN 290 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + G +D YNANP SM+ +++ +P GE R+ V+G M E+G + Sbjct: 291 EWKEIG---GRLVFLD-CYNANPISMRDSLATFVSNTPEGE-PRMYVIGCMEELGSEASR 345 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 H +L L N + + G ++ + S H Sbjct: 346 LHEELGREFPLRNQDFLLVIGSEAASVLRGMKDSGH 381 >gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2 Length = 454 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 138/474 (29%), Positives = 214/474 (45%), Gaps = 40/474 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L LS+ KTY G+YNN IG+P T+ P + + E G HLG+I L+ L RP Sbjct: 117 XLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G +G++ L D E L I Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGX-ASGSLLLAPADPIVE------DYLPI 229 Query: 245 -KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K + FG+ D RK + +++E Q + V G + A N + Sbjct: 230 DKKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAXIA- 281 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISV 359 V++ + I+ L+ H + R + ++ A N ++ + YNANP + K + Sbjct: 282 SYVALQEGVSEEQIR-LAFQHLELTRNRTEWKKAANGA--DILSDVYNANPTAXKLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + G++IAVL D E+G+ S H LS + V G + L Sbjct: 339 FSAIPANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLAS 398 Query: 420 RSI---HVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + HV+Y + + L ++ SL D +++K SNS +L+ L Sbjct: 399 QXFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESL 452 >gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL S4-378] Length = 394 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 37/397 (9%) Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V++ L AL +LA + K +IAITGS GKTTTK+++ + + K + G++ Sbjct: 18 PVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 77 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ Sbjct: 78 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 137 Query: 204 EEIASAKAEIFEGLEKTGTIFL---------NYDDSFFELLKAKSHALGIKTIYSFGKSK 254 EEIA AK EI GL +G + N D F +L KS A I + +++ Sbjct: 138 EEIAKAKLEITAGLNPSGILIYPHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAE 197 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVD 311 F + W+ +E+ IG H N + + + I + Sbjct: 198 GTSF-ITNWE--------------PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQ 242 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +A+K + E R + +++++YN++P ++K + + G+ + Sbjct: 243 SALKNM------ERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGKPKY 296 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSE 428 + VL DM E+G+LS H + AEVL I ++L G + A K I V + + Sbjct: 297 L-VLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFD 355 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 T + L + S + + ++VK S G ++ L+ Sbjct: 356 TKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 392 >gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis C6786] Length = 468 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 17/368 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+ + + F A+KG H+D H+F+ +GA +V+ S ++P V Sbjct: 29 VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ A + A G++NN Sbjct: 85 DTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 IGLPLTLLRLTAAHRLAVVELGMNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I G + + Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYASIWRVAATGNRIVDFALHGAGHDTPAAV---TGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S + + ++V + +G H A+N L + + + L F P +GR Sbjct: 262 LDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAAFAAGVPLAAIRQGLEAFEPVKGR 321 Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R + T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 322 LQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376 Query: 385 SQSFHIDL 392 +FH ++ Sbjct: 377 GPAFHREI 384 >gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 481 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 127/461 (27%), Positives = 204/461 (44%), Gaps = 36/461 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGV 88 + DSR I E F A+ G +D HDF+ GAG ++ N D ++P + Sbjct: 35 VGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISNKDKCPK----NLPAVCI 90 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACI--GSYNN 145 +D AL +LA A R+ + +TGS GKTT KEM+ +I +++ +++ + G+ NN Sbjct: 91 EDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAAVGESHTLVTKGNLNN 150 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PLTL ++ + ELGM+H GE L + + +IA+I H + + Sbjct: 151 DIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQANIALINNAQREHQEFMATVAA 210 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A++ L + G D F +L + + + NA + + Sbjct: 211 VAQEHADVIRALPQDGIAVFPGDSEFTDLWRKAAADRKVLDFVLSSTQTNASSAV--GGK 268 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +EV + S+++ + +G H +N L + + + L F P G Sbjct: 269 LLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIAAGISLKKIQEGLESFQPVNG 328 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + N TLID+SYNANP S++AAI L Q G I VLGDM E+G+ Sbjct: 329 RMQAKTIDANH---TLIDDSYNANPDSVRAAIDALKQ---SGNNAWI-VLGDMGEVGDQG 381 Query: 386 QSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 FH ++ + IS ++ + GF K AL + H MD L Sbjct: 382 PEFHQEVGAYAAEQGISKLFALGEQCQFAIQGFESAKGKSALSSATHF---SNMDSLIAQ 438 Query: 437 IQSSLVDGDV-------VVVKSSNSCGFYRLINLLLEEFPA 470 ++ +L + ++VK S R++ LLEE A Sbjct: 439 LRDALHAQALGTNQHLNILVKGSRFMRMERVVQALLEEAKA 479 >gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. SR1/5] Length = 462 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/459 (27%), Positives = 204/459 (44%), Gaps = 38/459 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q V I+ DSR + F + G D H FI ++ GA + T ++ Sbjct: 25 QEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIPQVMEAGA----LATLSERTLEGADH 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V L A+ +A + ++ ITGSVGKT+TKE++ L +T G++ Sbjct: 81 PYIQVGSSLQAVKDIAEFYLEQLDIPVVGITGSVGKTSTKEVIASVLKEKYRTLKTQGNF 140 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+PLT+ R+ + + + E+G+S GE+ L + +P VIT I HL N Sbjct: 141 NNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRLAKIAKPDTCVITNIGTCHLENLGDR 200 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DF 258 + + AK EIF+ +++ I LN DD +K + ++ ++ FG +NA + Sbjct: 201 DGVLKAKTEIFQYVKR--NIVLNGDDDKLSTVKEYN---SMQPVF-FGNGENASVTCENV 254 Query: 259 QLRKWKQCSEQSWMEVQLQGKSME-----VVHHGI---GYHMAQNMLMTLGIVSILTADV 310 + R K S ++ L+GK E H I G HM N L + + + Sbjct: 255 ESRGLKGMS----CDICLKGKMAENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNA 310 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + P GR + F ++D+ YNANP SMKA++ VL G GR Sbjct: 311 EQIKNGIESLEPVSGRFN----MIETDKFMIVDDCYNANPMSMKASLDVLQD----GLGR 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYS 427 ++A+LGDM E+G + H + I G H+ + V Sbjct: 363 KVAILGDMGELGTDEAALHEGVGVHAGQCRIDACICVGPLAAHIAEKASQTNPDLTVIRE 422 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ L + + + GD ++VK+S+ F ++ L E Sbjct: 423 KDLESLLKNLNTYVKPGDTILVKASHFMKFENVVKALQE 461 >gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] Length = 457 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 176/371 (47%), Gaps = 29/371 (7%) Query: 22 VPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 V +G VN +S D+R + P E FFA+KG +YD +DF+ K A VVV + +++++ Sbjct: 18 VQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQAAAVVV-SRVLSAV 76 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 S V V D L AL LA R +I +TGS GKT+TK+M+ L KT Sbjct: 77 NS-GTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKTSTKDMIASVLGVRYKTLK 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+YNN IG+PLTL M + E+ M GEI FL L RP AVIT I AHL Sbjct: 136 TSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEIDFLCQLARPTGAVITCIGEAHLE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 E IA+AK E+ + + G L+ + S L L + +G D Sbjct: 196 LLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA----GLTAGKVLFYGTEPQLDI 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + S S V + + E + I G H N L +G+ L L Sbjct: 252 RACDIQTGSNGSKFTV-ITSRGQEDIFLPIPGRHNIINSLAAVGVGLEL---------GL 301 Query: 318 SVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 S+ K G G R G T+I++ YNANP S KAA++ L+ + H R+ Sbjct: 302 SLPEIKAGLAEVVLTGMRMEIIKING-ITVINDVYNANPDSSKAALTTLADLG-HNR-RK 358 Query: 372 IAVLGDMCEMG 382 IAVLG M E+G Sbjct: 359 IAVLGSMFELG 369 >gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Riemerella anatipestifer RA-YM] gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer RA-GD] Length = 424 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 190/387 (49%), Gaps = 29/387 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N +SIDSR+IA + FFA G +++ A+ KGA V+V +I S +F Sbjct: 14 NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQKEYENI---SKNIFY 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V L L +L++ R + IIA+TGS GKTT+KE++ LS K G+ NNHI Sbjct: 71 VPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + + + E+G +H EI L + +P +T AHL F G+E + Sbjct: 131 GVPLTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVTNFGKAHLEGFGGVEGVI 190 Query: 208 SAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQ 265 K+E+++ L+K I +N +D+ ++ K K ++ I FG + DFQL Q Sbjct: 191 KGKSELYDYLKKENKQILVNANDT-IQVEKTKDYS----KIICFGTLQSDYDFQLFYDNQ 245 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM--LMTLGIVSILTADVDTAIKALSVFHPK 323 V L + E++ G + N+ +TLG+ D + +A+ + P Sbjct: 246 -------RVGLIFEGEEMISQLTGAYNFTNISAAVTLGLH--FGIDKNLIKEAIQEYTPT 296 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + +G TL+ ++YNANP+SM ++ + + G + ++GDM E+G+ Sbjct: 297 NMRSQ----IMQKGDKTLVLDTYNANPSSMAVSLENFALFN----GCKTVIIGDMLELGD 348 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFH 410 S+ H + + N + G H Sbjct: 349 ASKEEHKTILQKAQSLNFDKIITVGKH 375 >gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha153] Length = 452 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 179/362 (49%), Gaps = 21/362 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ D VA G+L Sbjct: 24 VSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALK--- 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGS 142 VDD L AL +A A R + ITGS GKTT KEML L A G+ Sbjct: 81 --VDDTLTALQMVAKAWRENVDPFVFGITGSGGKTTVKEMLASVLRRRFGDNAVLATAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFS 201 +NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ F Sbjct: 139 FNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFD 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G+ +IA AK+EI++GL G + +D+ + K + L +T +A+ + Sbjct: 199 GVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVL 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + VV G H N + + ++ + L F Sbjct: 259 KPLSCE----FDLVCGDERAAVVLPVPGRHNVHNAAAAVALSLAAGLSLNDVAEGLKGFS 314 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + + TLID++YNANP SMKAAI VL+++ RI V+GDM E+ Sbjct: 315 NIKGR-LNVKAGIKGA--TLIDDTYNANPDSMKAAIDVLARMP----APRIFVMGDMGEL 367 Query: 382 GE 383 GE Sbjct: 368 GE 369 >gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis EO147] Length = 468 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 17/368 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+ + + F A+KG H+D H+F+ +GA +V+ S ++P V Sbjct: 29 VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ A + A G++NN Sbjct: 85 DTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 IGLPLTLLRLTAAHRLAVVELGMNHPGETETLARIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I G + + Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYASIWRVAATGNRIVDFALHGAGHDTPAAV---TGV 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + S + + ++V + +G H A+N L + + + L F P +GR Sbjct: 262 LDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAALAAGVPLAAIRQGLEAFEPVKGR 321 Query: 327 GKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R + T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M E+G+ Sbjct: 322 LQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMGEVGDE 376 Query: 385 SQSFHIDL 392 +FH ++ Sbjct: 377 GPAFHREI 384 >gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 514 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 142/497 (28%), Positives = 223/497 (44%), Gaps = 46/497 (9%) Query: 11 LQAIQGHSI--GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-- 65 + AI G + G P V G + DSR+++ F + G DGHDF AV +GA Sbjct: 9 IAAITGGELVDGAEPDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFAGIAVDQGAVA 68 Query: 66 ----------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLAVA----ARLR 105 G++V N+D S + V D+ V+ AL+KLA A A Sbjct: 69 CLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKLARAHTKKAVEE 128 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T+I +TGS GKT+TK+++ L +T A GS+NN +G P T ++ + + Sbjct: 129 NGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTALKVGEHTTYLVS 188 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GT 222 EL +G I L + P I + + AH+ F E IA AK E+ E L G Sbjct: 189 ELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFGSKENIAQAKGELVEALPPAADGGV 248 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSM 281 LN DD ++ ++ A I +FG A + + ++ + ++G+ Sbjct: 249 AVLNADDPLVIGMRNRTSA----RIVTFGMDNPATVRAEDVELDAVARAAFTLCIEGEKA 304 Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GF 338 + + G H N L + D ++ ALS + YR + Sbjct: 305 RRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALS----EHVSSSEYRMDVRTRADG 360 Query: 339 FTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+I++SYNANP SM+A I L+ S + AVLG M E+G+ S + H LAEVL Sbjct: 361 VTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMGELGDDSLTEHAALAEVLY 420 Query: 398 LYNISHVWLSGFHV----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 ++ ++ G + LAL+ A ++ T + L GDVV+VK+SN Sbjct: 421 NRHVDNLVAVGDNTAMGALALE-ARRYGVNTEVVSTTQEAADIVLRHLKPGDVVLVKASN 479 Query: 454 SCGFYRLINLLLEEFPA 470 +CG + + + +L + A Sbjct: 480 ACGLWAVAHTILADPAA 496 >gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus MTCC 5462] Length = 462 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 36/390 (9%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + +P V D L A+ KLA L + ++AITGS GKTTTK+M L++ Sbjct: 76 TTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAILATQYHVVK 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +YNN IGVP+T+ M + + + E+GM G++ L+ L P +AVIT I AH+ Sbjct: 136 TPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAEPDVAVITMIGEAHIE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI---KTIYSF- 250 F +IA AK EI +GL++ GT N D+ + + G+ T+++ Sbjct: 196 FFKTRAKIADAKMEITDGLKEDGTFIFNGDEPLLVSRAKQVTQSQETFGLHPENTLFAHS 255 Query: 251 --GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G + +F + +W + + + + G+ Y++ N L L + Sbjct: 256 ISGHRNHTEFTVEQWPELT----FSIPIMGE----------YNVV-NALAALLVGRRFHV 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + KAL+ F R + + + ++ + YNANP +MKA I S+ Sbjct: 301 KPEAMQKALAHFQVTANRTQWLIGDVGE---QILSDVYNANPTAMKAVIHDFSEF--QTA 355 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PR-SIH 423 GR IAVLGDM E+GE S++ H LA+ L + I V+L G + AL +AL P+ +H Sbjct: 356 GRHIAVLGDMLELGEQSRTLHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVH 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + + + +Q+ + D++++K+S+ Sbjct: 416 YYPLDAKSTMIRDLQNDVGHDDMLLLKASH 445 >gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 3_1_12] gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 432 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 210/444 (47%), Gaps = 36/444 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G VV+ A + I + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPEDNKHIIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ L+ G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + D + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKT--GTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260 K E+++ L + T+F+++D+ + L + L + ++Y G + N+ + Sbjct: 194 KGELYDYLREKDDSTVFIHHDNVY---LMDIARGLNLIPYGSENSLYVNGHVTGNSPYLT 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK + + +VQ Q IG + N L + I + +AL+ + Sbjct: 251 FEWKAGKDGNLHQVQTQ---------LIGEYNFPNALAAVTIGRFFGVESSKIDEALAGY 301 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P+ R + + A N TLI ++YNANP SM AA+ ++ R++ +LGDM E Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---RKMLILGDMRE 354 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G S + H + E L + V L G + P Y+ + L +Q+ Sbjct: 355 LGAESAAEHHKIVEYLQECSFEKVLLVGELFASTNPPYPT-----YANAQE-LIKDLQTE 408 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 G +++K SN ++ L Sbjct: 409 NPQGYTILIKGSNGIKLSTVVEFL 432 >gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax ebreus TPSY] gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax ebreus TPSY] Length = 482 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 105/370 (28%), Positives = 165/370 (44%), Gaps = 26/370 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++A + F A+KG +D H F+ + A + +P V Sbjct: 40 VHTDTRTLAAGDLFVALKGERFDAHQFL----SQARTAGAAAAIAHAGLADAGLPGIEVP 95 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R + +IA+TGS GKTT +M+ L + K A G++NN + Sbjct: 96 DTLAALGALATGWRAQRDLPLIAVTGSNGKTTVTQMIAAVLRAWKGDAALATQGNFNNDV 155 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + + ELGM+H GEI L + RP +A++ HL +E +A Sbjct: 156 GVPLTLLRLRPGHEAAVVELGMNHPGEIANLADIARPTVALVNNAQREHLEFMHTVEAVA 215 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L GT D+F L + + G + +FG++ ++R C+ Sbjct: 216 HENGSVLSALPADGTAVFPAADAFTPLWRELA---GTRHCLTFGEAAG---EVR----CA 265 Query: 268 EQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 W + + + + G H N L + + + L+ F Sbjct: 266 AAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVTNALAATACALAAGGPLASIARGLAAFA 325 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P GR + T++D+SYNANP S+ AAI VL+ + G R+ VLGDM E+ Sbjct: 326 PVNGRSRALAVRCGGRSITVVDDSYNANPDSVHAAIEVLAALP----GPRLLVLGDMGEV 381 Query: 382 GELSQSFHID 391 G+ FH + Sbjct: 382 GDQGSQFHAE 391 >gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CC 2a] gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides xylanisolvens SD CC 1b] gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CC 2a] gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides xylanisolvens SD CC 1b] Length = 431 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 121/430 (28%), Positives = 204/430 (47%), Gaps = 31/430 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L +K T F+++D+ + + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDATTFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G++ +V IG + N L + I + KAL+ + P+ Sbjct: 254 AGKD---------GEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDKALAEYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S + H + + + + VWL G A + + +V E + L Q Sbjct: 357 DSPAEHQKIVDYIKESDFEKVWLVGEQFAASEHSFKTYANVQ--EVIKDL----QEDKPK 410 Query: 444 GDVVVVKSSN 453 G +++K SN Sbjct: 411 GYTILIKGSN 420 >gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] Length = 448 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 131/445 (29%), Positives = 212/445 (47%), Gaps = 33/445 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDS+ + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 26 ISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 84 VVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLLSSVYRVYASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204 + VPL+L D DF I E+G+S ++ L +V P +AVIT I H+ NF G++ Sbjct: 144 LTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQ 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263 IA K++I L + L D ++ +S + +SF + ADF + Sbjct: 204 GIAEEKSQI---LCNSRVQLLPKDSPWYPHFIKQSMS---AEKFSFAFYDETADFY---Y 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHP 322 K + S + +G V Y A N+L++L + +L VD I + Sbjct: 255 KVIRKDSVVISTPEGDIDFAV--AFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQL 312 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R+ ++ G +I+++YNA P +M AA+ + P G+ I +LG M E+G Sbjct: 313 PP---MRFEQSIRNG-IQIINDAYNACPEAMLAALDAIPH--PSEGGKVILILGHMAELG 366 Query: 383 ELSQSFHIDLA-EVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 S+ H +A + LS N I WL H++ + V + + G+ + Sbjct: 367 NYSEEGHTVVANKALSKANIIFFIGEKWLPIRHLVKHG-----ACEVSFYPSAQGIEEML 421 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462 + + GD+V++K S S L++ Sbjct: 422 KKVVQQGDIVLLKGSRSLALESLLS 446 >gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium chlorochromatii CaD3] gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 476 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 129/444 (29%), Positives = 208/444 (46%), Gaps = 39/444 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 + IDSR ++ F A+ G DGH ++ Q GA +VN + G P Sbjct: 33 VVIDSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGF 92 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYN 144 V+D + L LAV R I+AI GS GKTTTKEM+ L+S + G+ N Sbjct: 93 LVVEDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAVLASDSSAVSMSQGNRN 152 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH+GVPLTL +M + + E+G++H E+ L LV P ++T I HL ++ Sbjct: 153 NHLGVPLTLLQMRHSTERAVVEVGINHPNEMAMLAELVAPTHLLLTNIGHEHLEFLGDLD 212 Query: 205 EIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-----DF 258 +A A+ ++++ + G T F+N DD E L+A + + + YS ++ ++ D Sbjct: 213 GVAKAETQLYDYARQHGATAFINADD---ERLRAAAEGMPFRIDYSLHEAVDSLVWAEDV 269 Query: 259 QLRK---------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + K SEQ + + G+ H+ + A + + GI Sbjct: 270 TVERDGRLSFLLVTKGRSEQERLRLHFTGR-----HNVLNAVAAATVGLQFGI------S 318 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + L+ P G KR + G L++++YNAN SM+ AI L + + G Sbjct: 319 LHHICEGLAGLQPAPG-WKRLEV-VEVGGVRLLNDTYNANSDSMRRAIDALCDMPCN--G 374 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 RRIAV+GDM E+G+ ++ H +A + ++ ++ G A+ P + YSE Sbjct: 375 RRIAVVGDMLELGDAAEVEHQAVAHYIQRSLVTKLFTFGTQAAAICRHAPELCYGSYSE- 433 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSN 453 L + L +GDVV+VK S Sbjct: 434 HSALLDDLLHVLSEGDVVLVKGSR 457 >gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 133/450 (29%), Positives = 210/450 (46%), Gaps = 37/450 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ISIDSR++ + F AIKG ++DGH F+ + KG VV+ M + S + P + V Sbjct: 30 NISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKGMQRLLPS-NFPYWVV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D A KLA+ R + I+AITGSVGKTTTKEM+ L+ + + ++NN IG Sbjct: 89 NDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNEIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 V LT+ ++ + E+GM LG+I L+ P IAVIT I AH+ + I Sbjct: 149 VGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITH 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKA--KSHALGIKTIYSFGKSK--NADFQLRKW 263 AK EI + L G + + +D F E LK K + +K + + + D LR + Sbjct: 209 AKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGF 268 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+++ + ++ + E+ G+H A N L + L D + K F Sbjct: 269 YNPSKKT---ILIEENTFEISLE--GFHNASNFLFAYAVSKELGIDFASFNKF--DFVSF 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR K + T+ DESYNA+P S+KA I L + P + + G M E+G+ Sbjct: 322 GGRNKILKSLKT----TIYDESYNASPESVKACIKNLLE-KPRN---KFFIFGSMQELGK 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF------- 436 S+ +H E+ +L N S + L + + + +Y + + Sbjct: 374 ESEKYH---KEIFNLINNSDIE----KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVP 426 Query: 437 --IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I S GD +++K S ++I L+ Sbjct: 427 QEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA2] Length = 485 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 136/481 (28%), Positives = 204/481 (42%), Gaps = 65/481 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IIA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317 Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363 D T + R R + L+++ YNANP SM A+++ + + Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 P G +AVLGDM E+G+ S + + + +H +GF V +A+ D Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469 + ++ +G + + S V+G DVV++K+S R+ + EE Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482 Query: 470 A 470 A Sbjct: 483 A 483 >gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 447 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 202/454 (44%), Gaps = 40/454 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 V + DSR + F + G DGH FI A+ GA +A+ S+ Sbjct: 20 IVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGA---------IATFWSVQDQP 69 Query: 82 -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I V V D L A+ KLA R ++AITGS GKTTTK++ LS +TY Sbjct: 70 EDITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTKDLTASVLSQAFRTYKTQ 129 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YNN IG+P T+ MP D + E+GM H G++ L+ + RP IA IT I AH+ N Sbjct: 130 GNYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIARPDIAAITMIGEAHIENL 189 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +IA K EI L G + + D+ L + + +FG D Sbjct: 190 GSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGM----TQQVVTFGIDA-GDVAA 244 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ +EQ+ V+ Q + + +G + +N L+ I + L Sbjct: 245 HILEEHAEQTVFSVKEQDYRIPL----LGTYNVKNALIAYSIGEKFGVTPEQIANGLKNV 300 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + R + + L+ + YNANP +M + ++ +GRR AVL DM E Sbjct: 301 QVTKNRTQWLEM---ENGTRLLSDVYNANPTAMGLVLDSFGKLPV--QGRRFAVLADMLE 355 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDA-LPRSIHVHYSETMDGL 433 +G S H +A+ + N ++L G + LA +D+ +P + ++ + + L Sbjct: 356 LGPESSVMHAAMAD--HVQNYDGLFLVGEQMDYLAKELAARDSDVP--LELYDANELAAL 411 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L D++++K SN ++++ L E Sbjct: 412 IEDLKQLLQPADMLLLKGSNGMKLNQVVDALTSE 445 >gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] Length = 452 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA + +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQGLDIPQI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +++ L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAVKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI L + +G+R+ + M E+G+ ++ Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLDEF----DGKRVIAITSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ V+L G Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387 >gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] Length = 370 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 179/380 (47%), Gaps = 33/380 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ +G++ L D E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASGSLLLVPADPIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRIAVLGDM 378 S I + G++IAVL DM Sbjct: 338 TFSAIPANEGGKKIAVLADM 357 >gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella gracilis ATCC 19624] gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella gracilis ATCC 19624] Length = 496 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 125/449 (27%), Positives = 197/449 (43%), Gaps = 21/449 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR++ + F A++G +DG+ F+ A GA + + A++ +P Sbjct: 38 VRRVHTDSRTLREGDLFVALRGDRFDGNAFLAQARAAGAVAALCSD--AAALRQAQLPGI 95 Query: 87 GVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACI 140 V D AL +LA R + +IA+TGS GKTT +M L + K A Sbjct: 96 VVSDTRRALGQLAQGWRQHIARGHRLPLIAVTGSNGKTTVTQMTAAILRAHKPQTMLATE 155 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IGVPLTL R+ + + ELGM+H GEI L + RP +A++ H Sbjct: 156 GNFNNDIGVPLTLLRLRPRHELAVVELGMNHPGEIAELAAITRPTVALVNNAQREHQEFM 215 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSH-ALGIKTIYSFGKSKN 255 IE +A + L G DD++ EL A+S + + + Sbjct: 216 HSIEAVARENGAVISALGADGVAVFPSDDAYTGIWHELAGARSRLTFSVNDAAADLHCAD 275 Query: 256 ADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 +W+ + EVQ + ++ G H +N L ++ Sbjct: 276 PALAAPQWQVDDKGGRWEVQARTPAGALRFTLRVAGLHNVKNALAAAACALAAGVPLNAI 335 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L F P GR + R + TLID++YNANP S++AAI VL+ + G R+ Sbjct: 336 ARGLESFEPVSGRSRALRLPVAGRELTLIDDTYNANPDSVRAAIDVLASLP----GPRLL 391 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 VLGDM E+G+ FH ++ I + G A A + +H+ + +D L Sbjct: 392 VLGDMGEVGQEGPRFHAEVGTYARARGIELLHTLGEMSEATTQAF--TGGMHHGQDIDAL 449 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 L + +SL V+VK S R++ Sbjct: 450 NLVVLASLPQVHSVLVKGSRFMKMERVVQ 478 >gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] Length = 460 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 215/453 (47%), Gaps = 43/453 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +G++ DSR+ F A+KG +DG+DF L A+ KG VV+ A + Sbjct: 34 CSGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDR---AELAQKEARCL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL +LA R + II ITG+ GKTTTKE+++ L S A +G+ NN Sbjct: 91 YVEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNLNNQ 150 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL ++ +G+ E+G SH+G+I LT + P +IT I AHL F E + Sbjct: 151 IGVPLTLLSFTPEMQYGVVEMGASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGV 210 Query: 207 ASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR---- 261 AK E+++ L + G ++N DD LL S L ++T Y G S+ A F+ Sbjct: 211 TKAKCELYDWLGQHNGEAWVNADDP---LLMQHSAPL-VRTTY--GTSREAFFRASLLDH 264 Query: 262 ----------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 W++ E + QL GK Y++ N L + + L Sbjct: 265 PLGYFLAFAFYWQR--ETYRVHTQLVGK----------YNLP-NALAAVAVGLRLGVAPP 311 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + AL + P R + + L+ ++YNANP+SM AI +S G + Sbjct: 312 DIVMALEHYSPSNSRSQYIANTPHHN--NLVVDAYNANPSSMYTAIENF--LSTSGAQAK 367 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETM 430 +LGDM E+G S+ H+ L + L+ +L G AL+ ++ H+HY + Sbjct: 368 YLILGDMFELGSASREEHLALVQRLARETTDITCYLVGKEFAALESE-AKAPHLHYFPST 426 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + L ++ + ++ ++VK+S F L+ L Sbjct: 427 EILAEQLRLAPIEHAFILVKASRGMHFESLVEL 459 >gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] Length = 452 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 205/440 (46%), Gaps = 22/440 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR + F A++G ++GH F+ A+ +GA V+V+ D S+ P V Sbjct: 28 VSTDSRDDLSNKLFLALRGEKFNGHSFVDKAIDQGASGVLVDVDSGVSLE----PRIVVH 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A + +A R + + +ITGS GKT+ K+ L +L ++NNHIGV Sbjct: 84 NTLLAYHDIARFLRDAFQGRVFSITGSNGKTSVKDWLAQSLEDFGCVLKTQSNFNNHIGV 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL ++ + F + E G S GEI L+ + + ++T + +HL F + IA Sbjct: 144 PKTLIQIENNHQFAVVEAGTSFPGEISILSKTIHADVVIVTNASGSHLEGFGSTKAIAEE 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSE 268 K ++ + LN+DD FFE K + G + +SF S +AD + + Sbjct: 204 KGDLITYSSLYSKVILNFDDPFFEYWKGLT---GKREFFSFSLSDASADLYVSDLDLGAS 260 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +S V + +S V G H N L +G +++ DV I AL+ Sbjct: 261 ESSCIVHFRDQSSLVTIPAPGKHQVYNALAVIG--ALMHVDVHF-IDALNKVSKAVQVKG 317 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R L + LID+ YNA+P S++AAI VLS P ++ VLG + E+G+ +S Sbjct: 318 RMEFGLTKNNALLIDDCYNASPTSVEAAIDVLSMQKPI---KKWLVLGALGELGDQEESI 374 Query: 389 HIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H L + + I V ++G V K + R V+ S+ FL +L + Sbjct: 375 HRGLGKYAAEKKIDCVLAVGPIAGLAVDEFK-KVGREGRVYASKESLAQFLL---TLNNE 430 Query: 445 DVVVVKSSNSCGFYRLINLL 464 V+VK S S ++N++ Sbjct: 431 HAVLVKGSRSAKMDDIVNVI 450 >gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] Length = 475 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 173/392 (44%), Gaps = 33/392 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F AIKG +D HDF+ + V++ + ++P V Sbjct: 34 VSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR----TPQDWTVPALKVT 89 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D L LA R + ++A+TGS GKTT KEM+ A A G++NN Sbjct: 90 DTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNFNND 149 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL R+ + ELGM+H GE L + P +AV+ H + +E + Sbjct: 150 IGLPLTLFRLHAAHQLAVVELGMNHPGETLELAKIAEPTVAVVNNAQREHQEFMATVEAV 209 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + S+ DF L ++ Sbjct: 210 ALEHASVIHALTPEGVAVFPADDAYASIWRVAATG-----------SRIMDFALNSAERI 258 Query: 267 SEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +E + + + +EV +G H A N L +D + L Sbjct: 259 TEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALAATSAALAAGVSLDAIKRGLE 318 Query: 319 VFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLG 376 F +GR + + L T+ID++YNANP SM+AAI VL S+ +P R+ V+G Sbjct: 319 SFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLASRAAP-----RVLVMG 373 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 DM E+G+ +FH ++ I ++ G Sbjct: 374 DMGEVGDNGPAFHREIGAYAKERGIDALYAMG 405 >gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa HTCC2155] gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa HTCC2155] Length = 455 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 213/420 (50%), Gaps = 37/420 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + F++L QA+ G ++ + + + D+R FFA +G ++DGH+++ AV Sbjct: 1 MLDFNELCQALNGEAL-VRDANYDDYRAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAV 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKT 120 +KGA ++VV + V + S+ + VDD + A +L + + A ITGS GKT Sbjct: 60 EKGARVLVVAKE-VELLTLDSVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKT 118 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +T +L+ L I K+ + G+ NNHIGV + R+ D F E+G +H GEI L Sbjct: 119 STNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIADL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V PH A++T++ +H+ NFSGI+ I K +IF + + G + L+K Sbjct: 179 AKIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIFRYMARDGVAIVPA-----ALVKRI 233 Query: 239 SHALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQ 294 AL + T SFGK K AD +L ++ E+S V+L+ G+S+ + G H Sbjct: 234 EDALPERKDITYISFGKEKYADVRLGSYELGLEKSTFLVKLKSGESLSLESILSGEHQLL 293 Query: 295 NMLMTLGIV-------SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N+ + ++ S +D+ +A+ ++++ G + +Q T + + YN Sbjct: 294 NICACVALLENYQEEYSFTISDLKSALSSVAL----PGMRMKTEKVEDQ---TFVLDCYN 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHV 404 ANP S A + + + G + VLGDM E+G++++ +H +D A+ + +++ V Sbjct: 347 ANPQSTSAFLDWVKSVYKSG----VLVLGDMLELGDMAKKYHQEILDKAKAMQGFDLVTV 402 >gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] Length = 909 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 179/360 (49%), Gaps = 30/360 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR++ E F AIKG ++DGHDF+ G +V + A + F VD Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFL--ETIDCIGAIVSKPNPKAKVRQ-----FIVD 545 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------ 143 D A+ +A A R + +IA+ GS GKTT KEM+ +SI K+YA G+Y Sbjct: 546 DTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMI----ASILKSYAGDGAYFATRGN 601 Query: 144 -NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NNHIGVP +L + + +FELGM+H GEI +L+ L +P IAV+T H Sbjct: 602 LNNHIGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNAQREHQEFMKS 661 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +E +A +F+ L+ G + + +S K+I +FG++ + + Sbjct: 662 VEAVARENGSVFQSLDADGVAIYPRSSPYSYIWDEQSRHC--KSI-TFGEAGSVNATNIS 718 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + SE S V ++ + + + +G H QN L I + L+A +D + Sbjct: 719 YD--SEGSSFTVDVESEKLNIHLSILGDHNIQNALA--AIATTLSAGIDKKYIESGLAEF 774 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 K +G+ + L G ++D++YNANP S+ AAI +L ++ R VLGDM E+G Sbjct: 775 KAVKGRLQKHILKDG-TVILDDTYNANPDSVIAAIDILKTLAT----PRTLVLGDMGEVG 829 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 140/325 (43%), Gaps = 39/325 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87 + +DSR I + F A KG DG +F+ A++ GA +++ N D+V L PV Sbjct: 18 LRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDIVV----LQTPVLV 73 Query: 88 VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V ++ L +LA A SK +IA+TG+ GKT+ ++ AL+SI A IG+ Sbjct: 74 VKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGTLGT 133 Query: 146 ------HIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 ++G LT LA + V I + S +G + V+ IA Sbjct: 134 ILPSGENLGGSLTTPDVLSVHRILATL-VARGIEIVTIEASSIGIEQGRLDSVQIKIAGF 192 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDD----SFFELLKAKSHALG 243 T + HL ++E AK +F +GLE N DD +E KA S LG Sbjct: 193 TNLTLDHLDYHKSMQEYEEAKTSLFLRDGLE---CAIFNLDDMAGVRMYEKSKA-SRNLG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 YS + A + + +QL +V+ G H N+L+ G++ Sbjct: 249 ----YSILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVL 304 Query: 304 SILTADVDTAIKALSVFHPKEGRGK 328 S L V+ ++ ++ P GR K Sbjct: 305 SHLNVSVEKIVEIIATIRPVPGRLK 329 >gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] Length = 439 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 182/390 (46%), Gaps = 27/390 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR FFA+KG +DG+ F A++KG V++ A G+ + + VD Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRLIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +LA R R +I ITG+ GKTTTKE++ L G++NN +GV Sbjct: 74 NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261 K E+++ LE G +FLN + + A+ + I S+G+ + + + Sbjct: 194 KGELYDFLESHNGLLFLNESNPDLMEMAAQRN---FGRIISYGRDEGGNVEGEVIDCSPF 250 Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +W+Q Q+ + EV H IG + NML + + AL Sbjct: 251 LNFRWRQHLHAG----QMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALG 306 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + N+ LI ++YNANP+SM AAI + R++A+LGDM Sbjct: 307 HYIPSNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDM 359 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G +S H + L+ I VWL G Sbjct: 360 LELGTVSDEEHQKTVDALAAAGIKEVWLVG 389 >gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 460 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 126/432 (29%), Positives = 198/432 (45%), Gaps = 19/432 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+S DSR+I + + G +DG FI K A +++ D ++SIP Sbjct: 26 MIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKKAAAFLIDKDYKIK-NNISIPY 84 Query: 86 FGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD L AL LA A R S II ITGS GKTTTK++L L IG+ N Sbjct: 85 IRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTKDLLYEVLKKKFNVQKTIGNLN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP T+ + D + I E+G G+I T +V+P IA+IT I +HL E Sbjct: 145 NEIGVPKTILSLREDCEVAIVEMGTDSFGDISLTTSIVKPDIALITNIGDSHLEKLKTKE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 I AK EI EGL G N DD + + + K I SFG++ + DF ++ Sbjct: 205 GILKAKMEIVEGLNPEGYFIYNGDDPTIK-KDISLYTIKQKKI-SFGENDDNDFVVKDVG 262 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + + G E+ +G H N L I S+L + + L P Sbjct: 263 E--KLAKVSFSHDGDVYEIPL--LGSHNVYNGGACLLISSLLGLSKEQIKEGLLEVTPAN 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + F ++D+ Y +NP S+++ ++ + G +I VLGDM E+GE Sbjct: 319 NRSR----IIEFDGFDVLDDCYKSNPQSLRSGLNTTKMLG--GYDNKILVLGDMLELGES 372 Query: 385 SQSFHIDLAEVLSLYNISHVW----LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 + H + + + ++ + LS + + P++ H++ D L ++S Sbjct: 373 EKDLHYQVGKEIDPKDVHYCLFFGELSYYMYQGALENFPKNRLFHFTSKND-LIDKLKSL 431 Query: 441 LVDGDVVVVKSS 452 + ++ VK S Sbjct: 432 ITRSSLLFVKGS 443 >gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Burkholderia rhizoxinica HKI 454] gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) [Burkholderia rhizoxinica HKI 454] Length = 476 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 199/446 (44%), Gaps = 24/446 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P F A+KG +D HDF+ ++G V+V+ S G +P V Sbjct: 29 VSTDSRSCGPASLFVALKGERFDAHDFLPDLARRGVAAVLVSR----SPGDWRVPAIRVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL LA R R ++A+TGS GKTT KEM+ ++ + + G+ NN Sbjct: 85 DTRAALGALAAGWRRRFALPLVAVTGSNGKTTVKEMIASIFAAAVGHAQRLSTQGNLNNV 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL ++ + ELGM+ GE + L + P IA++ H + +E + Sbjct: 145 IGMPLTLLQLAPQHRLAVVELGMNRPGETQQLARIAGPTIALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L GT DD + + + + I N+D ++ Sbjct: 205 ALEHASVIHALPPDGTAVFPADDPYAGIWRVAATDNRIVDFALRRPGANSDAAVQ--GTT 262 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ + ++ + ++EV G H A+N L +D + L F P GR Sbjct: 263 TDTGALRIETRAGALEVSLRAPGEHNARNALAATAAALAAGVGLDAIRRGLETFEPVNGR 322 Query: 327 -GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + A+ T+ID++YNANP SM+AAI VL+ + R+ V+GDM E+G+ Sbjct: 323 LQAKLAQAMPWAGATVIDDTYNANPDSMRAAIDVLTMR----QAPRVLVMGDMGEVGDNG 378 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL------FIQ 438 +FH ++ + ++ G A +DA H H+ ++ + L + Sbjct: 379 PAFHREVGAYARERGLDALYALGD---ASRDACTAFGPHAHHFDSAEALICALLRQDAVA 435 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 S G ++VK S R++ L Sbjct: 436 SERAAGATILVKGSRFMRMERVVQAL 461 >gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] Length = 464 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 201/454 (44%), Gaps = 27/454 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S D+R++ P + A++G +DGHDF A +GA ++V + + +P Sbjct: 24 IDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLL-----PIELPQV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-----TIALSSIKKTYACIG 141 V D AL K+A + + AITGS GKT+ K +L +A + K YA G Sbjct: 79 LVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVKSLLLSILQQVARHAHKVVYANPG 138 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P D D+ ++E+G G+I +LT + RP A++ IAPAHL Sbjct: 139 NRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYLTDIARPRYALVNNIAPAHLERMG 198 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGKSKNADF 258 + +A K I+ L G +N DD++ + H +G + +G AD Sbjct: 199 SLLGVAVTKGAIYAALPADGVAVINVDDAYGRWF--EQHFVGTPARCRVLRYGLEHTADV 256 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + ++ S + VV G H N L + ++ L+ Sbjct: 257 TARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAAASLALAAGIELALVAAGLA 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GR ++ L+ G L+D+SYNANP S+ AAI L+ G VLGDM Sbjct: 317 DAQPVPGRQIAHQ--LHNGAV-LVDDSYNANPGSLAAAIDALAAAPEEG----WLVLGDM 369 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G +++ H + ++ G A A H++ T D L ++ Sbjct: 370 RELGPDAEALHAQAGLRARAAGLKRLYALGPLSAAAATAFGEGGR-HFA-THDALSQALK 427 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL---EEFP 469 L G +VK S ++ LL EE P Sbjct: 428 DELHAGVRCLVKGSRGSAMDTIVKALLAQGEESP 461 >gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] Length = 432 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 30/388 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I + VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260 K E+++ L ++ T+F+++D+++ L +H L + ++Y G + N+ + Sbjct: 194 KGELYDYLREKEDSTVFIDHDNAY---LMDIAHGLNLIPYGSEDSLYVNGHVTGNSPYLT 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK + +VQ Q IG + N L + I + +AL+ + Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P+ R + + A N TLI ++YNANP SM AA+ ++ +++ +LGDM E Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRE 354 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G S + H + + L + V L G Sbjct: 355 LGAESAAEHRKIVDFLQECSFEKVLLVG 382 >gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 22/373 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V+ + A L +P Sbjct: 16 MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 71 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139 V + AL ++A A R +AT +IA+TGS GKT+ K +L L+ + YA Sbjct: 72 VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 130 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D ++E+G G+I +LT + RP +A++ IAPAHL Sbjct: 131 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 190 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + + L + + +G +A+ Sbjct: 191 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 250 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + + ++ QG++ VV G H N L G+ L A + I A Sbjct: 251 ITARQLRLHAAGAQFVLATPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 307 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + + G++ L G LID+SYNANP S+ AAI L+ GEG VLG Sbjct: 308 AGLAQATQVAGRQIAHTLATGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 362 Query: 377 DMCEMGELSQSFH 389 DM E+G + + H Sbjct: 363 DMRELGPEAPALH 375 >gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 211/450 (46%), Gaps = 34/450 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +G V G +DSR E F A++G H DGH ++ QKGA +V+ + + + Sbjct: 21 EGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYLNEVKQKGALAAIVDQNYQGPV--FGM 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +F ++ L AL LA L + ++A+TGS+GKTTTKE + L T A G+ Sbjct: 79 HLFRTENPLLALQMLAQKC-LEKTSRVVAVTGSIGKTTTKEFIKTLLEQRYVTAASQGNS 137 Query: 144 NNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 N+ +G+PLT+ D + E+GM+ G++ L ++ P ++V+TT A H F Sbjct: 138 NSQVGLPLTVLNHTTGTEDILVLEMGMTEPGQLSTLVNIAHPEVSVLTTAALVHACRFET 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++IA KAEIF L D E + + K I S AD+ L Sbjct: 198 LKDIALTKAEIFSH----SHTRLGVVDREIEAYETIAQIGECKKISFSTVSSRADYHLET 253 Query: 263 WKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + EV+L +G+S+ + + G H N+L + + + +A+ Sbjct: 254 VNE-------EVRLKTEGQSISLGKMCLPGKHNLHNLLAAIAVARYFELTWNEIKQAIPF 306 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 E +R + +G + +++SYNA+ S+K+A+ L + G+G +IAVLG M Sbjct: 307 LKLPE---RRLQFVQKEGVY-FLNDSYNASELSVKSALETLPNAT--GKGYKIAVLGSMM 360 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-----KDALPRSIHVHYSETMDGLF 434 E+G S H + E +L + ++ G L + K P + + SE + L Sbjct: 361 ELGHFSDECHQRVGE-FALNYVDKMYCLGAECLPIVEVWKKANRPVELFMERSELISTL- 418 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +L DVV++K S S ++++ L Sbjct: 419 ---KKNLKPADVVLLKGSRSKELWKILEEL 445 >gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC 23834] gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC 23834] Length = 464 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 120/360 (33%), Positives = 178/360 (49%), Gaps = 23/360 (6%) Query: 33 DSRSIAPQEA-----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 DSR A + F A+ G +D HDF+ + +GA +V D +A GSL Sbjct: 34 DSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALVSRQDCIALSGSLP----- 88 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144 V D L AL LA A R ++ ITGS GKTT KEML L A G++N Sbjct: 89 VADTLAALQTLAAAWREAVNPMVLGITGSSGKTTVKEMLAAILRRQFGEAAVLATAGNFN 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL-SNFSGI 203 NHIG+PLTL + + + E+GM+H GE+ LT + P A++ AH+ F G+ Sbjct: 149 NHIGLPLTLLALRPQQRYAVIEMGMNHFGELDALTRIACPDAALVNNALRAHIGCGFDGV 208 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 +IA AK+EI+ GL ++GT + +D + E+ +A AL ++ I FG K + Sbjct: 209 GDIARAKSEIYRGLPESGTALIPAEDEYAEVFRAACRALNLRQI-EFGVDKG-EVHAENV 266 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++ Q + V G H N + + + + AL+ F Sbjct: 267 RLLPLGCRFDLVWQDQRAAVELPVPGKHNVANAVAAAALALQAGVGLSESATALAGFANI 326 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR +R + L T+ID++YNANP SMKAA+ VL ++ RI V+GDM E+G+ Sbjct: 327 KGRLQR-KAGLRGS--TIIDDTYNANPDSMKAALDVLVELP----APRIFVMGDMGELGD 379 >gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] Length = 473 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 125/429 (29%), Positives = 192/429 (44%), Gaps = 45/429 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR P F I G DGHD+ AV++GA V+ + LS+PV Sbjct: 27 VTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQGAVAVLA----ARPLEGLSVPVL 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + AL +A R +S A ++ ITGS GKTT KE+L LS KT + NN Sbjct: 83 LVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKELLAHVLSRRGKTACNALNLNNQ 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PL + + D DF +FE G+SH G++ L +++P +A+I + AH G + Sbjct: 143 VGMPLCMLKTDGDEDFWVFEAGISHEGDMDELGAILQPDLALILNVGAAHTEGL-GERGV 201 Query: 207 ASAKAEIFEGLEKTGTIFL--NYDDSFFE---------LLKAKSHALGIKTIYSFGKSKN 255 A K+ + L G + +YDD E A L + Y+ G S Sbjct: 202 AWHKSRLLAHLAPEGQALVSADYDDLVREARAVFGDVLFFTASGRPLSYRAAYA-GCSDG 260 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313 Q R W L G+ +V+ G + +N + + LTA+ A Sbjct: 261 VHGQYRLW------------LDGRPCDVIAPFRGDYGTENCIAVAAAAHMLGLTAEEIAA 308 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA---AISVLSQISPHGEGR 370 A + P+ R R R +G + ++D++YNANP SM A + +Q P Sbjct: 309 GFADAQLPPQ--RFARSR----RGNWDIVDDTYNANPLSMARMLDAAAESAQKRPF---- 358 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 + VLG+M E+G ++ H L L+ V+ G H A++D L ++ + Sbjct: 359 -VVVLGEMRELGGVADREHERLGRHLAQLRPVLVFWRGGHADAVRDGLEHGLYTGKFLPV 417 Query: 431 DGLFLFIQS 439 D F+Q+ Sbjct: 418 DSGEAFVQA 426 >gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] Length = 434 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 207/448 (46%), Gaps = 42/448 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A++KG +++ A G + D Sbjct: 16 VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYAVEGDSRYIL--TD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L +LA R + +I ITG+ GKTTTKE+++ LS G++NN IGV Sbjct: 74 NTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNVGRAHLLGFGSFEGVKKT 193 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261 K E+++ L E +FLN +S L+K I + ++G+ ++A+ Q Sbjct: 194 KGELYDFLAENDALVFLN--ESNPHLVKMVQQR-NINRVITYGQDEDANIQGEVLSCAPF 250 Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 W++ E EVQ Q IG + NML + I D AL Sbjct: 251 LKFNWRKEGEPQLYEVQTQ---------LIGAYNIDNMLAAITIGLHFGVDPVQINHALE 301 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS--QISPHGEGRRIAVLG 376 + P R + N+ LI ++YNANP+SM AA+ +SP ++A+LG Sbjct: 302 NYCPSNNRSQLTVTENNK----LIVDAYNANPSSMAAALENFKVMAVSP-----KMAILG 352 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G +S + H +A++L NI VWL G ++ + + +D + Sbjct: 353 DMRELGNVSDAEHQKIADMLKECNIDKVWLVG------EEFEKTNCNFTKFHNVDEVKEA 406 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I+ + G +++K SN ++L LL Sbjct: 407 IRQENLSGYYILIKGSNGIKLFQLPELL 434 >gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942] Length = 455 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 164/331 (49%), Gaps = 18/331 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR I P + F A++G +DGHDF+ A+ GA +V+ D + + VD Sbjct: 32 LTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAGHLLQVD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A ++A R R +I ITGSVGKTTTKE++ L+ +YNN IGV Sbjct: 92 NTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIAAMLAVRGPVLKTEANYNNEIGV 151 Query: 150 PLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T+ ++ D + + E+GM G+I L + +P+IAVIT + AH+ + IA Sbjct: 152 PKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTAHIGLLGSEQAIAE 211 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ L TG LN D+ L A + L + ++G +N D Q Q + Sbjct: 212 AKCELLAQLSGTGLAILNADN---HRLIATAQRLNLPRCRTYGL-QNGDLQ----GQLID 263 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V+ Q + + G H A N L L I L D + A + LSV P +GR + Sbjct: 264 LETLVVEGQRFRLPLP----GAHNALNFLAGLAIAQELGLDWE-AFRDLSVTLP-QGRAR 317 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISV 359 R + + L+DE+YNA SM AA+ Sbjct: 318 RIELSPD---IVLLDETYNAGLESMLAALQA 345 >gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides finegoldii DSM 17565] gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides finegoldii DSM 17565] Length = 432 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 186/386 (48%), Gaps = 26/386 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIIDEGEYAVEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L + +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 NCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKW 263 K E+++ L K TIF+++D+ + + + + T +Y G+ + N+ + +W Sbjct: 194 KGELYDFLRKKENSTIFIHHDNPYLMNMSEELDRIYYGTQDGLYINGRITDNSPYLAFEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + +Q Q IG + N L + I ++ +AL+ + P+ Sbjct: 254 KAGNGNEIHRIQTQ---------LIGEYNFPNALAAITIGHFFGVEMQKIDEALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMG 382 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NNRSQLKQTTDN----TLIIDAYNANPTSMMAALQNFRNMAVPH----KMLLLGDMRELG 356 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 S H + + N VWL G Sbjct: 357 AESNIEHQKIVNYIKDSNFEQVWLVG 382 >gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans DSM 12145] gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans DSM 12145] Length = 431 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 212/443 (47%), Gaps = 35/443 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R + FFA+KG ++D + F A+ GA +V+ + +F VD Sbjct: 16 VSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDKQDLPKHPQF---IF-VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + +I +TG+ GKTTTKE++ LS KT A +G+ NNHIGV Sbjct: 72 DVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D + I E+G +H EI L + P +IT + AHL F G E + Sbjct: 132 PLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITNVGKAHLEGFGGFEGVKKG 191 Query: 210 KAEIFEGLEKT-GTIFLNYDD-SFFELLKAKSHALGI-----KTIYSFGK-SKNADFQLR 261 K E+++ L K GT+F+N D+ E+ +++S I Y FGK N + Sbjct: 192 KGELYDFLSKNGGTVFINRDNLHLQEMARSRSFKEVIYYGTSSDNYVFGKLIANDPYLTV 251 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 +W + ++ QL G + +N+L + I L + ++ + Sbjct: 252 EWSDGENKDEVQSQL-----------TGIYNFENILAAIAIGKKLGLTTQQIHEGINSYK 300 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P+ R + + N T+I + YNANP+SM AI ++++ ++ +LGDM E+ Sbjct: 301 PQNNRSQIIKTERN----TVIGDFYNANPSSMAVAIENIARLEAD---NKVLILGDMFEL 353 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 GE S + H + E I+ V G K++ +S+ + + ++ L ++ + Sbjct: 354 GEESGAEHRAVIEKAEKLGIAKVLFVGQEF--FKNSNQKSV---FLKNVEELRTYLHENP 408 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 V ++++K S ++I L Sbjct: 409 VHQALILLKGSRGMKLEQVIAYL 431 >gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] Length = 465 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 224/455 (49%), Gaps = 43/455 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + A +G DGH F+ A +GA V+V ++ ++P V+D Sbjct: 30 DSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEV-----DEAVPQIVVEDST 84 Query: 93 GALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 AL LA A +LRS +IA+TGSVGKTTTK++L +S T A S+NN +G Sbjct: 85 EALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDGPTVAPKLSFNNEVG 144 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PLT+ + E+G S G I +LT +V P +A+ + AH+ F G E +A+ Sbjct: 145 LPLTVLLADETTRHLVLEMGASGPGHITYLTDIVAPDVAIELCVGHAHVGGFGGFEGVAA 204 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQC 266 AKAE+ +G G + LN DD E + + I+ +S ++ AD R + + Sbjct: 205 AKAELIKGTRPGGPVILNTDDPNVEAMAPLATGRVIR--FSASGNERADVVARDVRLDRA 262 Query: 267 SEQSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S+ V +G++ +++V HH A +TLG+ A V + +ALS Sbjct: 263 DRASFTLVTPEGEAPVELKIVGRHHVANALAAAAGALTLGVGLETVASVLSRARALSPH- 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R + ++ TLID+SYNAN SM+A I+ L+ I + +RIAVLG+M E+ Sbjct: 322 ----RMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAALASIGR--DSQRIAVLGEMLEL 375 Query: 382 GELSQSFHIDLAEVLSLYNI---------SHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 GE SQS H + +++ + +H +L G + ++ ++ D Sbjct: 376 GEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPEVPNREV--------AADPQDA 427 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ + DG VV+VK S +++ ++L E+ Sbjct: 428 ARLALEHA-EDGAVVLVKGSFGSQSWQVADILREK 461 >gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] Length = 511 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 141/489 (28%), Positives = 212/489 (43%), Gaps = 52/489 (10%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69 P V G + DSR +AP F G DGHDF A+++GA +VV Sbjct: 23 PDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQGAVAVLAAREVGVPAIVV 82 Query: 70 VNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSK--ATIIAITGSVGK 119 T + G+ + ++ D V+ AL+ LA V +L S+ +II +TGS GK Sbjct: 83 QPTGRIEGDGA-NADIYANDADGSAAAVVRALSDLAHYVTTKLTSEHDLSIIGVTGSAGK 141 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ L + +T A GS+NN IG P T R VD + + EL +G I+ LT Sbjct: 142 TSTKDLIATILRNDGETVAPPGSFNNEIGHPYTALRCDVDTKYLVAELSARGIGHIKHLT 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236 + P I V+ + AHL F E IA AK E+ E L + G LN DD F + Sbjct: 202 DIATPRIGVVLNVGTAHLGEFGSRENIAIAKGELVESLPDVSEGGVAVLNADDPFVAAMA 261 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 ++ A + + + AD+ + S+ K + V G H Sbjct: 262 KRTTAKVVTYSSANPPAVGADYYATNITLDNVARPSFTLHAPGVKPVSVTLQVFGVHQVS 321 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L V++ +LS + R T+I++SYNANP SM+ Sbjct: 322 NSLAAAAAAIEAGLSVESVADSLSGH--RNASAHRMDVHTRADGVTIINDSYNANPDSMR 379 Query: 355 AAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411 AAI+ L S + R IAVLG+M E+G+ + H L L+ +++ + + G Sbjct: 380 AAIAALGYTTSGRPDARSIAVLGEMGELGDDAIEEHYSLGAELAKFDVHTLIVVGETANG 439 Query: 412 -LALKDALPRSIHVHYSETMDGLFLFIQSSLVD-------------GDVVVVKSSNSCGF 457 A R I+ S +D I+ L DVV+VK+SN+ Sbjct: 440 EAMASAAAERGINTMVSRDIDEAIWHIEDVLNTPPAGVEDWSAREMKDVVLVKASNAQRL 499 Query: 458 Y----RLIN 462 + RL+N Sbjct: 500 WLVSERLLN 508 >gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] Length = 465 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 27/447 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + A +G DGH F+ A +GA V+V ++ ++ + V+D Sbjct: 30 DSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEAVTQIV-----VEDST 84 Query: 93 GALNKLAVA--ARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 AL LA A +LRS +IA+TGSVGKTTTK++L +S T A S+NN +G Sbjct: 85 EALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDGPTVAPKLSFNNEVG 144 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PLT+ + E+G S G I +LT +V P +A+ + AH+ F G E +A+ Sbjct: 145 LPLTVLLADETTRHLVLEMGASGPGHITYLTDIVAPDVAIELCVGHAHVGGFGGFEGVAA 204 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQC 266 AKAE+ +G G + LN DD E + + I+ +S ++ AD +R + + Sbjct: 205 AKAELIKGTRPGGPVILNTDDPNVEAMAPLATGRVIR--FSASGNERADVVVRDVRLDRA 262 Query: 267 SEQSWMEVQLQGKS---MEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S+ V +G++ +++V HH A +TLG+ A V + +ALS Sbjct: 263 DRASFTLVTPEGEAPVELKIVGRHHVANALAAAAGALTLGVGLETVASVLSRARALSPH- 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R + ++ TLID+SYNAN SM+A I+ L+ I + +RIAVLG+M E+ Sbjct: 322 ----RMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAALASIGR--DSQRIAVLGEMLEL 375 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSS 440 GE SQS H + +++ + + G + P H ++ D L ++ + Sbjct: 376 GEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPEVPHREVAADPQDAARLALEHA 435 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 DG VV+VK S +++ ++L E+ Sbjct: 436 -EDGAVVLVKGSFGSQSWQVADILREK 461 >gi|319795793|ref|YP_004157433.1| mur ligase middle domain protein [Variovorax paradoxus EPS] gi|315598256|gb|ADU39322.1| Mur ligase middle domain protein [Variovorax paradoxus EPS] Length = 1028 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 184/385 (47%), Gaps = 14/385 (3%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIG 141 +PV V +VL A+ +L AR + + G G +T M+ AL+ + G Sbjct: 651 VPVLKVPNVLQAVLQLGEHARTEFTGRVCGVLGHGTGSSTVAAMMAGALTVWGEVGQPEG 710 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + + G+ L MP + + E+G SH+ + LVRP + V+T ++ A + Sbjct: 711 NISLPSGIAWNLTCMPRHAAYWVLEMGTSHMPAS---SQLVRPSLVVVTGLSAASQKHRG 767 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQ 259 + A A IF+G+ + LN D F + A +H L I T +G+ ++AD + Sbjct: 768 PSDAAARMDARIFQGMAAGDNVVLNRDMPEFPIFAEAATAHQLQIVT---YGEHEDADVR 824 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 L + Q+ Q+ G+ ++ + G HM + LG + L + A++ + Sbjct: 825 LLAFDHGEVQA----QVAGEPFQLRLNAPGRHMGAAAVAALGALQSLRLPLAAAVEPFAH 880 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F P GRG + + G F LIDE+Y+ANP+SM+AA+ +LSQ +P RR+A+LGDM Sbjct: 881 FEPPGGRGALHTIHIGGGSFKLIDETYDANPSSMRAALELLSQ-APCEPARRVAILGDMQ 939 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G +Q H+DL L V L G + AL ++ + H+ + L + Sbjct: 940 ELGPAAQRHHLDLEAELLASQPDRVLLCGPLMRALHASIRTKVRSHWFVDVSDLSTALGG 999 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 L GD V+ KSS G RL +L Sbjct: 1000 LLQPGDWVLAKSSAGVGLSRLARVL 1024 >gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 439 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 182/390 (46%), Gaps = 27/390 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR FFA+KG +DG+ F A++KG V++ A G+ + + VD Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNGRLIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +LA R R +I ITG+ GKTTTKE++ L G++NN +GV Sbjct: 74 NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------- 261 K E+++ LE G +FLN + + A+ + I S+G+ + + + Sbjct: 194 KGELYDFLESHDGLLFLNESNPDLMEMAAQRN---FGRIISYGRDEGGNVEGEVIDCSPF 250 Query: 262 ---KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 +W+Q Q+ + EV H IG + NML + + AL Sbjct: 251 LNFRWRQHLHAG----QIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALG 306 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + N+ LI ++YNANP+SM AAI + R++A+LGDM Sbjct: 307 HYIPSNNRSQLETTEHNR----LIVDAYNANPSSMAAAIDNFKLMKAE---RKMAILGDM 359 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 E+G +S H + L+ I VWL G Sbjct: 360 LELGAVSDEEHQKTVDALAAAGIKEVWLVG 389 >gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida U112] gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112] gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] Length = 452 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 189/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA + +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSFAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI L + +G+R+ + M E+G+ ++ Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLDEF----DGKRVIAITSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ V+L G Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387 >gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] Length = 494 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 133/479 (27%), Positives = 227/479 (47%), Gaps = 44/479 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78 P+ G++ DSR P + + A+ G DGHDF+ A+ GA +V + ++ Sbjct: 23 PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L V V D A+ +A R +IA+TGS GKTTTK ++ L+S T A Sbjct: 83 AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP TL D + E+GM G++ L VRP ++ + +H+ Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202 Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGK--- 252 E IA AKAE+ L E TG F+N DD + + ++ A+ A ++T+ G Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETVLFDGSAAA 262 Query: 253 ----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY------HMAQNMLMTLGI 302 ++ Q + +EQ +E+ QG+ + H +G+ A+ L G+ Sbjct: 263 AERRAQADAAQTARPAVWAEQ--VELDEQGRPRFRL-HAVGFADAPEEETARCALTLRGL 319 Query: 303 VSILTADVDTAI------------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ A TA+ AL+ P+ GR + R +G FT+++++YNANP Sbjct: 320 HNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---RGGFTVVNDAYNANP 376 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 SM+A+++ + G+ +AVLGDM E+G + + H + E + + + G Sbjct: 377 DSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCVGEL 434 Query: 411 VLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L + DA R+ + + ++ +F + + + GD V+VK+S+ G R++ L+ Sbjct: 435 SLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHFMGLTRVVEGLV 493 >gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] Length = 468 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/415 (28%), Positives = 183/415 (44%), Gaps = 45/415 (10%) Query: 17 HSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + ++P V G +S DSRS+ + F A+KG +D HDF+ +GA Sbjct: 8 QAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAA 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT- 127 +V+ + + S+P V D L LA R R ++A+TGS GKTT KEM+ Sbjct: 68 LVSREGAPA----SLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIAS 123 Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 A I + G++NN IG+PLTL R+ + ELGM+H GE + L + P Sbjct: 124 IFAAAVGIDARLSTAGNFNNDIGLPLTLLRLSAAHRLAVIELGMNHPGETQTLAKIAAPT 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ H + +E +A A + L G DD + Sbjct: 184 VALVNNAQREHQEFMATVEAVALEHASVIHALAPDGVAVFPADDKY-------------A 230 Query: 246 TIYSFGKSKNA--DFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQN 295 I+ + NA DF L + + + + ++ EV +G H A+N Sbjct: 231 GIWRVAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMK 354 L ++ L F P +GR + R A+ LID++YNANP SM+ Sbjct: 291 ALAAAAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMR 350 Query: 355 AAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AAI VL+ Q SP R+ V+G+M E+G+ +FH ++ I ++ +G Sbjct: 351 AAIDVLAQQASP-----RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATG 400 >gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] Length = 432 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 123/444 (27%), Positives = 211/444 (47%), Gaps = 36/444 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I + VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260 K E+++ L ++ T+F+++D+++ L +H L + ++Y G + N+ + Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLT 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK + +VQ Q IG + N L + I + +AL+ + Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P+ R + + A N TLI ++YNANP SM AA+ ++ +++ +LGDM E Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRE 354 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G S + H + + L + V L G A P + + E + L Q+ Sbjct: 355 LGTESAAEHRKIVDFLQECSFEKVLLVGEQFTATHP--PYHTYANAQEVIKEL----QTE 408 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 +++K SN ++ L Sbjct: 409 KPKDYTILIKGSNGIKLNTVVEFL 432 >gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 459 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 37/410 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 +N IS++S+ + F AI+G G+++I A++KGA V N D+ + Sbjct: 23 INKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYAVYDNAHADIKEEYKN---K 75 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 F V+D + L K A R +I ITGS GKTT K++ LSS K G+YN Sbjct: 76 TFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGNYN 135 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL R+ D F I E+GMS GEI L + P I++IT I +HL E Sbjct: 136 NHIGLPFTLLRLEKDDKFIILEMGMSGFGEIELLGKISNPDISIITNIGESHLEFLHTKE 195 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKN---ADFQL 260 + AK E+ ++ + +N DD + + + S +KTI K SKN ++F Sbjct: 196 NVFKAKTELLPYTKE--VLIINGDDDYLKNINESS----LKTIKVLRKDSKNIEKSNFYY 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLGIVS---ILTADVD 311 + S ++ K E +G H N+ M + + I D++ Sbjct: 250 GNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVAKQFGIEDKDIE 309 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +K + + R++ +G I+++YNA+PASMK ++ S+I + + + Sbjct: 310 ETVKNIKLTDM------RFQIT-EKGNTIYINDAYNASPASMKKSLETFSEI--YNDRMK 360 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 IAVLGDM E+GE H D+ E L ++ ++L G + +L D + + Sbjct: 361 IAVLGDMLELGENELELHSDIYETLRNIKLNKLYLFGERMKSLYDRVKKE 410 >gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 638R] Length = 432 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 30/388 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I + VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260 K E+++ L ++ T+F+++D+++ L +H L + ++Y G + N+ + Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLT 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK + +VQ Q IG + N L + I + +AL+ + Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P+ R + + A N TLI ++YNANP SM AA+ ++ +++ +LGDM E Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVE---KKMLILGDMRE 354 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G S + H + + L + V L G Sbjct: 355 LGTESAAEHRKIVDFLQECSFEKVLLVG 382 >gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL060PA1] Length = 485 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 135/480 (28%), Positives = 207/480 (43%), Gaps = 63/480 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSI---------------LTADV 310 + L S + G + LMT+G + + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAAWAMNDDI 317 Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 D +ALS + R + L+++ YNANP SM A+++ + + Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 + + R +AVLGDM E+G+ S + + S +H +GF V +A+ D Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470 + ++ +G + + S++ D DVV++K+S R+ + EE A Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483 >gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 509 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 142/499 (28%), Positives = 221/499 (44%), Gaps = 52/499 (10%) Query: 14 IQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA----- 65 I G S+ V P V G I DSR + F A+ G DGHD+ A+++GA Sbjct: 12 ITGGSLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLA 71 Query: 66 ------GLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA--T 109 VVV + + + ++ D+ V+ AL+ +A V RL ++ Sbjct: 72 ARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLD 131 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ +TGS GKT+TK++L + T A GS+NN +G+P T R F + E+ Sbjct: 132 IVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHTRFLVAEMSA 191 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLN 226 +G IR LT + P + V+ + AHL F E IA AK E+ E L G LN Sbjct: 192 RGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPSAAEGGVAVLN 251 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282 DD F + ++ A + YS K +D Q + + S++ + Sbjct: 252 ADDPFVAGMAPRTSAKVV--YYSANKPPASDAQYYASDIQLDDVARPSFVLHAPGTDPLP 309 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G H N L + + + +D + A ++ + R + T I Sbjct: 310 VKLQVFGKHQVSNALAAA--AAAIESGMDPQVVANALSGHQNASEHRMDVRTRRDGVTTI 367 Query: 343 DESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 D+SYNANP SM AAI+ L+ S + R IAVLG+M E+G + + H L EVLS Y++ Sbjct: 368 DDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAVAAHRALGEVLSKYHV 427 Query: 402 SHVWLSGFH---VLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVD------GD 445 H+ G + ++ A R I+ S ++ + + + D D Sbjct: 428 DHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVAPAGIEDWTGREAKD 487 Query: 446 VVVVKSSNSCGFYRLINLL 464 VV++KSSN+ +R+ L Sbjct: 488 VVLIKSSNAQRLWRVAEQL 506 >gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 426 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 196/387 (50%), Gaps = 27/387 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI +S+ + F A+KG ++DG+ F A+ GA + +V+ V S + V Sbjct: 5 GIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCR----KIIYV 60 Query: 89 DDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNH 146 DD L L KLA+ R + + IIAITGS GKTTTKE+ LS +K + + NNH Sbjct: 61 DDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKNNLNNH 120 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ MP++ + E+G +H EI + +++P IT AHL F IE I Sbjct: 121 IGIPLTILSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYITNFGKAHLEGFKSIEGI 180 Query: 207 ASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRK-W 263 K E++ L+K +F+N DD +L K ++G+K I+S + K ++ +++ W Sbjct: 181 IRGKLELYNFLKKNKKVVFVNGDDP-IQLDK----SIGMKRYIFSEKEDKKSNVKIKYLW 235 Query: 264 KQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q C +S + V + ++ IG + N+ + I ++ KA+ + Sbjct: 236 NQVGCDLKSILYVD----NTKISSSLIGNYNLYNIASAISIGKYFKISLEKIKKAVEEYI 291 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 PK R + +N+ +I + YNANP SM I L+ + + +G +IA+LGDM E+ Sbjct: 292 PKNHRSQ----IMNKKNTKIIIDCYNANPTSM---IKALTFFNNNIKGNKIAILGDMLEL 344 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 G S H + + NI+ +L G Sbjct: 345 GFYSNHEHEKIIFFIEKSNINTTFLIG 371 >gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA1] gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA1] gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA2] gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA2] gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA1] gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA1] gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA2] gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA1] gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA2] gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA1] gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA2] gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL086PA1] gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA4] gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA1] gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA3] gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA3] gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL067PA1] gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA1] gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA1] gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA2] gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA1] gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA1] gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA2] gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA2] gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA3] gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL078PA1] gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA2] gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA3] gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA1] gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA2] gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA1] gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA2] gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL097PA1] gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA3] gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA2] gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA3] gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL092PA1] gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA2] gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA1] gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL020PA1] gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA2] gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes 266] Length = 485 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 135/481 (28%), Positives = 203/481 (42%), Gaps = 65/481 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317 Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363 D T + R R + L+++ YNANP SM A+++ + + Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 P G +AVLGDM E+G+ S + + + +H +GF V +A+ D Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469 + ++ +G + + S V+G DVV++K+S R+ + EE Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482 Query: 470 A 470 A Sbjct: 483 A 483 >gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] Length = 479 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 129/464 (27%), Positives = 203/464 (43%), Gaps = 35/464 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-----------SI 78 + D+R + P F A+ G DGHDF AV+ GA V+ ++ A Sbjct: 5 VEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQA 64 Query: 79 GSLSIPVFGVDDVLGALNKLA-------VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130 S S+ + G D GA A V RL + T+I +TGS GKT+TK+++ + Sbjct: 65 NSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGLTVIGVTGSSGKTSTKDVIAQLI 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + T A GS+N+ +G P T R F + E+ +G I P I + Sbjct: 125 EPMGPTVAPPGSFNSELGHPWTALRADASTKFLVLEMSARGVGHIAAAAETTPPRIGAVL 184 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH+ F E IA AK E+ E L + G LN DD + +++ A I Sbjct: 185 NVGSAHVGEFGSREGIAKAKGELVEALPEDGLAVLNLDDPLVAAMASRTKA----RIVGV 240 Query: 251 GKSKNADFQLRKWKQCSE--QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILT 307 G+S A + +E S+ + +G++ + + H G H N L I L Sbjct: 241 GESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLH--GEHHVGNALSAAAIARELG 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A + + LS + R R T++++SYNANP S++A + L+ +S G Sbjct: 299 ATTEEIAQRLSSLQRRSER--RMEVTTRADGVTILNDSYNANPESVRAGLKALASMSRSG 356 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHY 426 R AVLG M E+GE S + H + ++ NI + + G A+ + A Sbjct: 357 R-RAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQEAAAMHQGAFQEGSWGEE 415 Query: 427 S---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S ++ + L GDVV+VK+S + G +R+ LL + Sbjct: 416 SVLVPDVEAAVAVLHDQLRPGDVVLVKASKAAGLWRVAEALLAD 459 >gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Ralstonia solanacearum CFBP2957] gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CFBP2957] Length = 482 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 21/455 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + ++ DSRS+ P + F A+ G +D HDF+ V +GA V+V+ A++ Sbjct: 26 PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAALDLSG 85 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYAC 139 + V V D AL +LA R + ++A+TGS GKTT KEM++ + A Sbjct: 86 VAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFACAVGEDARLAT 145 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++NN IG+PLTL R+ + ELGM+H GE L + +P +A+I H Sbjct: 146 AGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLATIAQPTVALINNAQREHQEF 205 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKN 255 +E +A+ A + L G D + + L +A A G + + FG Sbjct: 206 MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLDFGIEGG 262 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A ++ ++V G + +G H A+N L + + Sbjct: 263 AVSA--TVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAATACALAAGIAPEVIAQ 320 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ALS F P +GR +R + ++ G +ID++YNANP S++AAI L+ + R VL Sbjct: 321 ALSAFAPVKGRLQR-KPGVHGGL--VIDDTYNANPDSVRAAIDALATLP----APRWLVL 373 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G +FH ++ I V +G + DA H++ + + L Sbjct: 374 GDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARHVVDAFGGGAR-HFA-SAEALIE 431 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ G V+VK S R+++ L+ + PA Sbjct: 432 QGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] Length = 477 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 30/401 (7%) Query: 2 NPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + L + ++L+A+ G H +G P + + DSR + F + G + DGH ++ A Sbjct: 5 DSLLSLEEILEAVNGVHVLGNSPL-CIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQA 63 Query: 61 VQKGAGLVVVNTDMVASIGSL---------SIPVFGVDDVLGALNKLAVAARLRSK---A 108 ++KGA +V ++ + G+ S+ V++ L AL K AAR K Sbjct: 64 IEKGASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQK--SAARYVEKFPHL 121 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 I +TGS GKTTTKE+L LS K + G+ N+ G+PL++ + + + G+FE+G Sbjct: 122 IKIGVTGSSGKTTTKEILVSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEMG 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 M+ EI + +++P AV+T I AH+ E IA KA+IF GT + D Sbjct: 182 MNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPVD 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D F + LK + + K ++ +G ++ K + + +E + Sbjct: 242 DEFSDFLK---NEIDGKVVF-YGNDTDS------VKYICDMGLKGTKFSIDGIETILPLP 291 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + ++ L + + +L +S P GR + L+ F ++ + YNA Sbjct: 292 GKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSE----ILDGKNFLIMQDCYNA 347 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 NP SM+ AI + + + ++I VLGDM E+G S+S H Sbjct: 348 NPDSMEKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAH 388 >gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110] gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110] Length = 1024 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 113/383 (29%), Positives = 180/383 (46%), Gaps = 10/383 (2%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-VGKTTTKEMLTIALSSIKKTYACIG 141 +PV VDDV A+ L AR + + GS +T ML AL+ + G Sbjct: 647 VPVLQVDDVPQAVLALGAHARTEFTGRVCGVLGSGTAGSTVAAMLADALAVWGEVGRPEG 706 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + + G+ L MP + + E+G H+ LVRP +AV+T ++ A + Sbjct: 707 NVSLPSGMAWNLTCMPRHAAYWVLEMGSPHMLAT---AQLVRPMLAVVTGLSAASQKHRG 763 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E A + IFEG+ + LN D F + A ++ I ++G+ K+AD +L Sbjct: 764 PSEAAAHMDSRIFEGMAPGDSAVLNRDLPEFATFAEAAMAHQLQ-IVTYGEHKDADVRLL 822 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + Q+ Q+ G+ ++ + G HM + + L + + + A++ + F Sbjct: 823 SFDHGEVQA----QVLGEPFQLRLNAPGRHMGASAVAALAALQAMRLKLAAAVEPFAQFE 878 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P GRG + + G F LIDE+Y+ANP+SM+AA+ +LSQ +P RR+A+LGDM E+ Sbjct: 879 PPGGRGALHTIHIGGGSFKLIDETYDANPSSMRAALELLSQ-APCEPARRVAILGDMQEL 937 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G +Q H+DL L V L G + AL + + H+ + L + L Sbjct: 938 GPAAQRHHLDLEPELLASQPDRVLLCGPLMRALHARIRTKVRSHWFVDVSDLSTALGGLL 997 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 GD V+ KSS G RL +L Sbjct: 998 QPGDWVLAKSSAGVGLSRLARVL 1020 >gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 509 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 138/488 (28%), Positives = 216/488 (44%), Gaps = 50/488 (10%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-----------GLVVV 70 P V G I DSR + F A+ G DGHD+ A+++GA VVV Sbjct: 23 PDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAIEQGAVAVLAARPVGVPAVVV 82 Query: 71 NTDMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA--TIIAITGSVGKT 120 + + + ++ D+ V+ AL+ +A V RL ++ I+ +TGS GKT Sbjct: 83 KPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTRRLTAEQGLDIVGVTGSAGKT 142 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK++L + T A GS+NN +G+P T R F + E+ +G IR LT Sbjct: 143 STKDLLATIFRAEGDTVAPPGSFNNEVGLPYTALRCDEHTRFLVAEMSARGIGHIRHLTT 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKA 237 + P + V+ + AHL F E IA AK E+ E L G LN DD F + Sbjct: 203 ITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPSAAEGGVAVLNADDPFVAGMAP 262 Query: 238 KSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 ++ A + YS K +D Q + + S++ + V G H Sbjct: 263 RTSAKVV--YYSANKPPASDAQYYASDIQLDDVARPSFVLHAPGTDPLPVKLQVFGKHQV 320 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + + +D + A ++ + R + T ID+SYNANP SM Sbjct: 321 SNALAAA--AAAIESGMDPQVVANALSGHQNASEHRMDVRTRRDGVTTIDDSYNANPDSM 378 Query: 354 KAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410 AAI+ L+ S + R IAVLG+M E+G + + H L EVLS Y++ H+ G + Sbjct: 379 HAAIAALAYTSAARPDARAIAVLGEMGELGGEAVAAHRALGEVLSKYHVDHLVAVGDNDN 438 Query: 411 -VLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVD------GDVVVVKSSNSCG 456 ++ A R I+ S ++ + + + D DVV++KSSN+ Sbjct: 439 MRAMVEAAQARGINTTISPDVDAAAAAVEDIIRVAPAGIEDWTGREAKDVVLIKSSNAQR 498 Query: 457 FYRLINLL 464 +R+ L Sbjct: 499 LWRVAEQL 506 >gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dietzia cinnamea P4] gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dietzia cinnamea P4] Length = 500 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 146/490 (29%), Positives = 215/490 (43%), Gaps = 45/490 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL------ 58 T ++ + G +G P V G + DSR + P F A+ G DGHDF+ Sbjct: 5 TLGEIAGIVGGRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVARALDAG 64 Query: 59 -------HAVQ--KGAGLVVVNTDMVASIG-SLSIPVFGVDD-VLGALNKLAVAARLRSK 107 H V GA +VV D + +L+ G VL AL LA A+ R Sbjct: 65 AAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARASVDRLV 124 Query: 108 A----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 A ++ +TGS GKT+TK+++ LS+ A GS+NN IG P T R D DF Sbjct: 125 ADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRADEDTDFL 184 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--- 220 + EL G IR L L P I V+ + AHL F E IA+ K E+ E L Sbjct: 185 VLELSARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSREVIAATKGELVEALPDAAHG 244 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQG 278 G LN DD + ++ A + + G +AD + + E S+ V +G Sbjct: 245 GVAVLNADDDRVAAMAGRTSA----EVVTVGLGGSADVRAEGVRLDDEVRASFTLVTPRG 300 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 ++ EV G H N L + DV+ AL R R + Sbjct: 301 EA-EVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAEAASER--RMDVRVTADG 357 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEV 395 T+I++SYNANP SM+AA+ L+ ++ G G R AVLG+M E+GE + H + Sbjct: 358 ITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAELGEDAVIEHDLIGRF 417 Query: 396 LSLYNISHVWLSGFHVL-------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 L ++S + + G A+++ S H + T + + S L GD+V+ Sbjct: 418 LVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWGSEAEHVA-TAEEAVEILDSRLEPGDIVL 476 Query: 449 VKSSNSCGFY 458 VK+S + G + Sbjct: 477 VKASAAVGLW 486 >gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 133/473 (28%), Positives = 204/473 (43%), Gaps = 38/473 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T +L A G +G P+ V I DSR F IKG D HDFI + Sbjct: 5 TLKNLALACNGTYVG--PKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQVM 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +K + D+ G P V L A+ +A + + ++ ITGSVGKT+ Sbjct: 63 EKAVLATLSEKDL----GEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVGKTS 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ L+ T G++NN +G+PLT+ R+ + + + E+G+S GE+ L + Sbjct: 119 TKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKI 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP+ VIT I HL + I AK EIF+ L+ I LN DD + L Sbjct: 179 ARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDD---DKLVTVQET 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWK-------QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 GIK ++ FG + K K C + E S V+ G H Sbjct: 236 KGIKPVF-FGVENHQGIWADKIKPEGLKGISCCIHAGEE------SFSVLIPVPGKHSVY 288 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + ++ K + GR + +T+ID+ YNANP SMK Sbjct: 289 NALAATAVGLTYGLTIEEIRKGIESLQSVSGRFH----IIEAPNYTVIDDCYNANPISMK 344 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A++ VL+ GR++A+LGDM E+G + H ++ + + I + G + Sbjct: 345 ASLDVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDM 400 Query: 415 KDA---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 DA + V + + L + L GD V+VK+S+ F ++ L Sbjct: 401 ADAAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453 >gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9605] gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Synechococcus sp. CC9605] Length = 449 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 131/448 (29%), Positives = 204/448 (45%), Gaps = 29/448 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + + DSR + + F + G +DGH F+ + A VV+ + Sbjct: 22 PDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHKAQAAVVSRCWAEPLPP-D 80 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + VDD L A +LA+ R ++A+TGS GKTTT+E++ AL+ + A G+ Sbjct: 81 LLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPLGAIQASEGN 140 Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 NN +GVPLT L D + E+GM LGEI L++ P +AVIT I AH+ Sbjct: 141 NNNDVGVPLTVLGATAADAAL-VIEMGMRGLGEIERLSYCTEPDLAVITNIGTAHIGRLG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADF-- 258 E IA+AK EI GL GT+ + D E L A ++ + +D Sbjct: 200 SREAIAAAKCEITAGLHPQGTVVIPAGDPLLESALSAVWSGRVLRVRLADDPEVESDLVG 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + +QL+G+ H A+N+L+ + + L A++A+ Sbjct: 260 DINGDQLLIDADRLPLQLEGR-----------HNARNLLLAVAVADQLGVS-RRALQAIQ 307 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 V P GR +R L QG TL+DE+YNA+P A L P GRR AVLG M Sbjct: 308 VTVPG-GRNRR----LQQGGLTLLDETYNASP-EAVLAALDLLAAQP---GRRFAVLGTM 358 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLF 436 E+G+ S H ++A + + L G A+ + H+ + Sbjct: 359 LELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAASLPHLQLVSNPEDAAAP 418 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L GD +++K+S RL+ LL Sbjct: 419 LAAWLEAGDFLLLKASRGVALERLMPLL 446 >gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA1] Length = 485 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/389 (29%), Positives = 168/389 (43%), Gaps = 37/389 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317 Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363 D T + R R + L+++ YNANP SM A+++ + + Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLATR 377 Query: 364 -SPHGEGRRIAVLGDMCEMGELSQSFHID 391 + + R +AVLGDM E+G+ S + + Sbjct: 378 RARDPQTRGVAVLGDMLELGQDSARLNAE 406 >gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] Length = 452 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 19/383 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA ++V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGTLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEG 325 S ++++ + + IG H N+L + L I S++ ++ + + K Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKH---NLLNSVLAIASVVAVGLEPKDFLQNTQNIKNY 309 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ + Sbjct: 310 KG-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEA 364 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 +++H + + L N+ ++L G Sbjct: 365 ENYHRKMGQWLKKANLDKIFLFG 387 >gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] Length = 464 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 119/427 (27%), Positives = 203/427 (47%), Gaps = 33/427 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI+ +G+ ++ A++KGA +V+ + V Sbjct: 58 IQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVIADHYFEPHE-----RVI 108 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + +LA R K +IAITGS GKTTTK+++ LS T +G+YNNH Sbjct: 109 SVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNH 168 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ + +F + E+GMS GEI L + RP +IT I +HL E + Sbjct: 169 IGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENV 228 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ L + G + DD F LK S G+ Y G D+++ +++ Sbjct: 229 FKAKTELLPYLPQ-GHFITSGDDIF---LKKVS---GVHVGYEEGN----DYRIVSYRK- 276 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ Q++GK E+ G H N M + + ++ + + LS R Sbjct: 277 -KERMTSFQVRGKDYEICLE--GKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMR 333 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R+ + I+++YNA+P SM AA+ L ++ R+ AVLGDM E+GE Sbjct: 334 FERFEYRGTE----YINDAYNASPISMFAALDSLEEMKAE---RKFAVLGDMLELGEREI 386 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 FH ++ + ++ V L G + LP +++ E+ + + +++ Sbjct: 387 EFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEGLYHFESKEAIREYLRK--FSEKT 444 Query: 447 VVVKSSN 453 V++K+S Sbjct: 445 VLIKASR 451 >gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12] Length = 426 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/428 (28%), Positives = 207/428 (48%), Gaps = 35/428 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FFAI+ +G+ ++ A++KGA +V+ + V Sbjct: 20 IQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEKGASIVIADHYFEPHE-----RVI 70 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D + + +LA R K +IAITGS GKTTTK+++ LS T +G+YNNH Sbjct: 71 SVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTFPTKKTLGNYNNH 130 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ + +F + E+GMS GEI L + RP +IT I +HL E + Sbjct: 131 IGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENV 190 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK E+ L + G + DD F LK S G+ Y G D+++ +++ Sbjct: 191 FKAKTELLPYLPQ-GHFITSGDDIF---LKKVS---GVHVGYEEGN----DYRIVSYRK- 238 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ Q++GK E+ G H N M + + ++ + + LS R Sbjct: 239 -KERMTSFQVRGKDYEICLE--GKHNVMNAAMGIALAEMIGMKPEEIQRNLSQIELSPMR 295 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R+ + I+++YNA+P SM AA+ L ++ R+ AVLGDM E+GE Sbjct: 296 FERFEYRGTE----YINDAYNASPISMFAALDSLEEMKAE---RKFAVLGDMLELGEREI 348 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 FH ++ + ++ V L G + LAL + LP +++ E+ + + +++ Sbjct: 349 EFHKEVIQKAMSCHLQAVLLYGTRMKLALHE-LPFHEGLYHFESKEAIREYLRK--FSEK 405 Query: 446 VVVVKSSN 453 V++K+S Sbjct: 406 TVLIKASR 413 >gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] Length = 468 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I D+R++ + A++G +D H F AV +GA V+V+ + L +P Sbjct: 24 VRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141 V D AL +A A + + ++A+TGS GKT+ K ML A S YA G Sbjct: 80 VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYANSG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P D DF ++E+G LG+I +LT +V P +A++ IAPAHL Sbjct: 140 NRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A K EI+ L GT +N DD+F + + G + FG AD Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADITAY 258 Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q SE S ++ V QG+ + V G H N L + + + L + Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLPQIAAGLGL 316 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GR + G LID+SYNANP S+ AI L+ + G VLGDM Sbjct: 317 ARSVPGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAA----GPGWLVLGDMR 369 Query: 380 EMG 382 E+G Sbjct: 370 ELG 372 >gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] Length = 468 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/413 (29%), Positives = 179/413 (43%), Gaps = 26/413 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 W F + A+ I V QG V I DSR + + F + G +D HDF Sbjct: 6 WAFEHIATALSKLLIAQVNQGVPELPSAVRLIQTDSRLVEKGDLFVCLIGERFDAHDFAG 65 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++ GA +V N + L I F V+D AL LA A R + ++A+ GS G Sbjct: 66 QVMKSGAAALVTN-----RVLDLPIHQFVVNDTRLALGALASAWRQQFDLKVLAVVGSNG 120 Query: 119 KTTTKEML---TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT+KEML A + G+ NN IGVP TL ++ + E+GM+H GEI Sbjct: 121 KTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVPQTLLKLRPQHQMAVIEMGMNHPGEI 180 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L LV+P + ++T H + +A+ F L G D F Sbjct: 181 DYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTHLSSNGCAVFPVSDEFDACW 240 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 +A S K+ FG ADF++ + QS + ++ +E+ + IG H N Sbjct: 241 QALSTG---KSTLRFGSG--ADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGEHNYAN 295 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + L+ F P G R + ALN LI++SYNANP S+ A Sbjct: 296 AAGAAAAAHAAGCTHEAIQAGLNAFQPVNG---RLQVALNTPSILLINDSYNANPDSVNA 352 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A VL Q + G + VLGDM E+G S +H ++ + H++ G Sbjct: 353 ASKVLGQQA----GSTLLVLGDMGEVGNQSDEYHAEVGSYAKQAGVKHLYALG 401 >gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylibium petroleiphilum PM1] gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylibium petroleiphilum PM1] Length = 470 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 171/382 (44%), Gaps = 24/382 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 D+R++ + F A+KG +D HDF+ A GA + + A + L V D Sbjct: 33 DTRTLRAGDLFVALKGERFDAHDFLPQARAAGAVAAIAEHGLAEAGLAGLH-----VADS 87 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGV 149 AL L R R +IA+TGS GKTT +M+ L + +A G++NN IGV Sbjct: 88 RAALGTLGANWRARMSLPLIAVTGSNGKTTVTQMIASILRAWVGDAAFATEGNFNNDIGV 147 Query: 150 PLTLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 PLTL R+ D D + ELGM+H+GEI L + P +A++ H + +E Sbjct: 148 PLTLLRLRQDADTWHRAAVVELGMNHVGEIAQLARMAAPTVALVNNAQREHQEFMASVEA 207 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WK 264 +A + E L GT DD+ + +A + G + +F +D W Sbjct: 208 VARENGAVIEVLGANGTAVFPSDDAHAAVWQALA---GTRPTLTFSLEGPSDLVAEAVW- 263 Query: 265 QCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S W V + + G+H +N L ++ + L F P Sbjct: 264 --SGDHWAAVLHTPAGATAIRLRVAGWHNVKNALAATACALAAGCPLEAVARGLEAFEPV 321 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + TL+D+SYNANP S++AAI VL+ + G R VLGDM E+G+ Sbjct: 322 KGRSQVKALQRGGRAVTLVDDSYNANPDSVRAAIDVLATLP----GPRWLVLGDMGEVGD 377 Query: 384 LSQSFHIDLAEVLSLYNISHVW 405 +FH ++ + I +W Sbjct: 378 QGPAFHAEVGRYAAACGIDALW 399 >gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida Fx1] Length = 453 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA + +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSFAVKIRVFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G+ LN TL+D++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 GRFSTEKLNDK-LTLVDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ V+L G Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387 >gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] Length = 452 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/389 (28%), Positives = 181/389 (46%), Gaps = 22/389 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + DL + + I +V + GI+IDSR + + F G + DGHD+I A +KG Sbjct: 3 YFVKDLEKILNAKKINLVDNKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKG 62 Query: 65 A-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + + D V+ + V+D A+ LA I+AITGS GKTTTK Sbjct: 63 AVASLSLKDDFVSDNN-----IIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++T L + K + G++NN +GVPLT+ P D D + E+G + G++ FL+ LV+ Sbjct: 118 DIVTSILETKFKVHKTQGNFNNELGVPLTILAAPEDSDILVLEMGADNFGQLDFLSKLVK 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +IT I +H+ F IA AK EI G++K G N D+ + L S Sbjct: 178 PDYTIITNIGESHIEFFGSRAGIAKAKFEITNGMKKDGFFVYNGDEPLLKELVENSSI-- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302 S G++ D L + ++ ++ + + G H N++ + I Sbjct: 236 --NATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK--GKHNLFNIMFAVAIA 291 Query: 303 --VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + ++ AI +S R +I+++YNA+P SMKAA+ V+ Sbjct: 292 KKIGLTNEEIRHAIDNISKI-----TNMRLESITYGEDSLIINDAYNASPTSMKAAVDVI 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH 389 S ++ + VLG M E+G +H Sbjct: 347 SDLNDF--EFKTLVLGSMFELGPNEVEYH 373 >gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris] Length = 494 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/366 (32%), Positives = 186/366 (50%), Gaps = 22/366 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V+ + A L +P Sbjct: 23 MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139 V + AL ++A A R +AT +IA+TGS GKT+ K +L L+ + YA Sbjct: 79 VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D ++E+G G+I +LT + RP +A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + + L + + +G +A+ Sbjct: 198 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + + ++ V QG++ VV G H N L G+ L A + I A Sbjct: 258 ITARQLRLHAAGAQFVLVIPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 314 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + + G++ L G LID+SYNANP S+ AAI L+ GEG VLG Sbjct: 315 AGLAQATQVAGRQIAHTLTTGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369 Query: 377 DMCEMG 382 DM E+G Sbjct: 370 DMRELG 375 >gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] Length = 448 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 35/446 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDSR + P + FFA+ G DGH F+ HA Q GA VV+ D S + + Sbjct: 26 ISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKHAAQAGAVAAVVSKDYCGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL + + TI+ ITGS+GKTTTK LSS+ K YA SYN+ Sbjct: 84 IVNDPTEALKEAGENQSHLFQGTIVGITGSIGKTTTKVFANTFLSSVYKVYASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIE 204 + VPL+L + DF I E+G+S G ++ L +V P +AVIT + H NFS GI+ Sbjct: 144 LTVPLSLLMADGNEDFIILEMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQ 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFG-KSKNADFQLRK 262 IA K I L+ + L D ++ +K S + +SF ++ ADF Sbjct: 204 GIAEEKGRI---LQNSRVQLLPKDSPWYPHFIKQASSS----EKFSFAFHNETADFY--- 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFH 321 +K + S + +G + Y A N+L++L + +L VD + + Sbjct: 254 YKAIRKDSVIISTPEGDIDFAI--SFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQ 311 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R+ ++ G +I+++YNA P +M AA+ + P G+ I +LG M E+ Sbjct: 312 LPP---MRFEQSMRNGI-QVINDAYNACPEAMIAALDAIPH--PSESGKIILILGHMAEL 365 Query: 382 GELSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 G S+ H +A + LS ++ I WL HVL S V + + G+ Sbjct: 366 GNYSEEGHTIVAKKALSKASIIFFIGEKWLPIQHVLNYG-----SCEVSFHPSAQGIEEI 420 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++ + GD+V++K S S L++ Sbjct: 421 LKKVVQQGDIVLLKGSRSLALESLLS 446 >gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM 17393] gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM 17393] Length = 432 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 210/450 (46%), Gaps = 48/450 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A++ G+ +V+ A G + VD Sbjct: 16 VTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVDEVEYAPAGDPHYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L L +LA R + II ITG+ GKTTTKE++ LS G+ NNHIGV Sbjct: 74 SCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D GI E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 134 PLTLLRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK----------NAD 257 K E+++ L K TIF+++D+ + ++ A G+ I S+G N+ Sbjct: 194 KGELYDYLRERKDSTIFIHHDNLYL-----RNIAWGLNQI-SYGSEDGLYINGHVTGNSP 247 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAI 314 + +WK + EV+ Q IG + N L + I + + +DTA+ Sbjct: 248 YLTFEWKAGKDGEHHEVKTQ---------LIGEYNFANALAAVTIGHFFDVESGKIDTAL 298 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 K + P+ R + + A N TLI ++YNANP SM+A+IS + ++ + Sbjct: 299 KE---YTPQNNRSQLKQTADN----TLIIDAYNANPTSMQASISNFHNMEI---DNKMLI 348 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+G+ H + + L+ V L G A + P Y + + Sbjct: 349 LGDMRELGKDGPKEHQKIVDFLTECGFKDVMLVGEQFAAARHDFPT-----YPDA-PAVI 402 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Q + G +++K SN +I+ L Sbjct: 403 EALQKNKPHGKTILIKGSNGIKLSTVIDYL 432 >gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL074PA1] gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA1] gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL007PA1] gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL056PA1] gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA1] gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL045PA1] gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA1] gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL038PA1] gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA2] gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA2] gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA1] gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL099PA1] Length = 485 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 135/481 (28%), Positives = 203/481 (42%), Gaps = 65/481 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGNAHLGEFGSREVI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAATAAALAALAMNDDI 317 Query: 311 D--TAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---- 363 D T + R R + L+++ YNANP SM A+++ + + Sbjct: 318 DDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLTSMGHVLATR 377 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 P G +AVLGDM E+G+ S + + + +H +GF V +A+ D Sbjct: 378 RVRDPQTRG--VAVLGDMLELGQDSARLNAESGRL-----AAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG----------DVVVVKSSNSCGFYRLINLLLEEFP 469 + ++ +G + + S V+G DVV++K+S R+ + EE Sbjct: 425 EAENIAEGARAEGARVIV--STVEGASGSLGWTSHDVVLLKASRGLALERVGREVFEERE 482 Query: 470 A 470 A Sbjct: 483 A 483 >gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 130/465 (27%), Positives = 210/465 (45%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++ A G + P V + DSR + F +KG D H F+ A GA Sbjct: 4 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + M I VD AL ++A A R R ++ ITGS GKTTTKEM Sbjct: 64 AAALTQEHMRMEAEEAWI---AVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKEM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +ALS+ K G++N+ IG+PL + + + + + E+G+S GE+ L + P Sbjct: 121 TALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLAQVAEPK 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV+T + H+ I K I + + +FLN DD L+ K+ G + Sbjct: 181 YAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT---GYE 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVS 304 T++ +G+ DF+ E + G +S+EV +G H + L L + Sbjct: 238 TVF-YGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVAE 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + A AL + P R + Y +N+ +ID+SYN++P + K+++SVL+ Sbjct: 297 RLGVPLKRAAAALRDYRPLAMRQQIYH--VNE--VAVIDDSYNSSPGAAKSSLSVLAGFR 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 GRR+AVL DM E+GE S+ H ++ + + + G A+ + RS+ Sbjct: 353 A---GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVGQEAKAVAEG-ARSVRA 408 Query: 425 HYS-ETMDGLFLF---IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +D + ++S L GD V+VK S ++ LL Sbjct: 409 GIDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVRALL 453 >gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] Length = 468 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I D+R++ + A++G +D H F AV +GA V+V+ + L +P Sbjct: 24 VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141 V D AL +A A + + ++A+TGS GKT+ K ML A S YA G Sbjct: 80 VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P + DF ++E+G LG+I +LT +V P +A++ IAPAHL Sbjct: 140 NCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A K EI+ L GT +N DD+F + + G + FG AD Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 258 Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q SE S ++ V QG+ + V G H N L + + + L + Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 316 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GR + G LID+SYNANP S+ AI L+ S G VLGDM Sbjct: 317 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTAAS----GPGWLVLGDML 369 Query: 380 EMG 382 E+G Sbjct: 370 ELG 372 >gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I D+R++ + A++G +D H F AV +GA V+V+ + L +P Sbjct: 21 VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141 V D AL +A A + + ++A+TGS GKT+ K ML A S YA G Sbjct: 77 VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 136 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P + DF ++E+G LG+I +LT +V P +A++ IAPAHL Sbjct: 137 NCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A K EI+ L GT +N DD+F + + G + FG AD Sbjct: 197 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 255 Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q SE S ++ V QG+ + V G H N L + + + L + Sbjct: 256 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 313 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GR + G LID+SYNANP S+ AI L+ S G VLGDM Sbjct: 314 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTAAS----GPGWLVLGDML 366 Query: 380 EMG 382 E+G Sbjct: 367 ELG 369 >gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] Length = 452 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA ++V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVTIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ ++L G Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387 >gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] Length = 432 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 123/444 (27%), Positives = 210/444 (47%), Gaps = 36/444 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I + VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHIIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGK-SKNADFQL 260 K E+++ L ++ T+F+++D+++ L +H L + +Y G + N+ + Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAY---LMDIAHGLNLIPYGSEDALYVNGHVTGNSPYLT 250 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 +WK + +VQ Q IG + N L + I + +AL+ + Sbjct: 251 FEWKAGKDGDLHKVQTQ---------LIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGY 301 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P+ R + + A N TLI ++YNANP SM AA+ ++ +++ +LGDM E Sbjct: 302 TPRNNRSQLKKTADN----TLIIDAYNANPTSMMAALQNFRNMTVK---KKMLILGDMRE 354 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G S + H + + L + V L G A P + + E + L Q+ Sbjct: 355 LGAESAAEHRKIVDFLQECSFEKVLLVGEQFTATHP--PYHTYANAQEVIKEL----QTE 408 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 +++K SN ++ L Sbjct: 409 KPKDYTILIKGSNGIKLSTVVEFL 432 >gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] Length = 453 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 189/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA + +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQDLDIPQI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA++T + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMVTNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ V+L G Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387 >gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus infantis SK1302] gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus infantis SK1302] Length = 391 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 182/393 (46%), Gaps = 22/393 (5%) Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V+DVL A LA ++ + A+TGS GKTTTK+ML L++ KTY G+Y Sbjct: 10 PYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKTYKTQGNY 69 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P T+ MP D + + E+G HLG+I L+ L P A++T + AHL+ F Sbjct: 70 NNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDR 129 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 EIA K +I +G+EK G + D + L K + FG A+ ++ + Sbjct: 130 SEIAKGKLQIADGMEKGGVLLAPVDPIVEDYLPTD------KKVVRFGPG--AELEITEL 181 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + +V +++++ G Y+ M+ + V++ + I+ F Sbjct: 182 TERKDSLTFKVNFLEQALDLPVTG-KYNATNAMIASY--VALQEGVTEEQIR--QAFQNL 236 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R ++ + YNANP +MK + S I + G++IAVL DM E+G+ Sbjct: 237 ELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGD 296 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHY------SETMDGLF 434 S H + ++ + V G + L + HV+Y + + + Sbjct: 297 QSVQLHNQMILSITPDVLDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMV 356 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ SL D +++K SNS +L+ L E Sbjct: 357 KQVKESLGAHDQILLKGSNSMNLAKLVESLENE 389 >gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica OSU18] gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis subsp. holarctica OSU18] gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 452 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA ++V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVTIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ ++L G Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387 >gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase [Paludibacter propionicigenes WB4] gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paludibacter propionicigenes WB4] Length = 434 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 125/443 (28%), Positives = 216/443 (48%), Gaps = 29/443 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR FFA+KG ++D + F L A++ G VV+ A + V+ Sbjct: 13 ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYA----IDERFILVE 68 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +L +LA R + +I ITG+ GKTTTKE++ L G+ NNHIGV Sbjct: 69 NVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNNHIGV 128 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL ++ + + + E+G +H EI+ L + P +IT + AHL F E + Sbjct: 129 PLTLLQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNVGMAHLEGFGSFEGVKKT 188 Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRK-WKQC 266 K E++E + K G IF+N ++ + S + + + S+ KN+ +++ C Sbjct: 189 KRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISYSLDKNSSSRIKAVVTDC 248 Query: 267 SEQSWMEVQL---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S ++E++ + S ++ IG + A+N+L + I + + L ++P+ Sbjct: 249 S--PFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGLNKEELTAGLEKYNPQ 306 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + N+ LI ++YNANP SMKAAI +Q++ G + +LGDM E+GE Sbjct: 307 NNRSQLTITENNK----LIIDTYNANPTSMKAAILNFAQMNVEG---KTLILGDMLELGE 359 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL 441 S + H + ++L ++ V L G + RS + Y+ + + L +I++ Sbjct: 360 QSSAEHQGIIDLLKQNKLADVLLVGNNF--------RSTNNPYTCFDEVTELINYIKNKP 411 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 + V++K S +++ LL Sbjct: 412 ICNKYVLIKGSRGIKLEKVVPLL 434 >gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct] Length = 487 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA + +V+ L IP Sbjct: 49 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAI-----LVSKKQGLDIPQV 102 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 103 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 161 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 162 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 221 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 222 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 278 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + IG H N + L I S++ ++ + + K + Sbjct: 279 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 336 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 337 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 391 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ ++L G Sbjct: 392 NYHRKMGQWLKKANLDKIFLFG 413 >gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteriales bacterium ALC-1] gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteriales bacterium ALC-1] Length = 251 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N +S D+R + + +FA+KG ++DG+ F+ AV+ GA VV+ D A I I V Sbjct: 14 NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVD-DEDAMINENCILV-- 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 +DVL L +LA R II++TGS GKTTTKE++ L++ A +G+ NNHI Sbjct: 71 -EDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL D+DFGI E+G +H EI FL ++ +P +IT AHL F IE I Sbjct: 130 GVPLTLLSFSEDLDFGIVEMGANHQKEIEFLCNIAQPDYGLITNFGKAHLEGFGSIEGII 189 Query: 208 SAKAEIFEGLEKTGT-IFLNYDD 229 K+E+++ L +F+N +D Sbjct: 190 KGKSELYDFLRNNNKLVFINTND 212 >gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 452 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA ++V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTKGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ ++L G Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387 >gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA2] gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA3] gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA4] gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA2] gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL103PA1] Length = 485 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 135/480 (28%), Positives = 206/480 (42%), Gaps = 63/480 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317 Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 D +ALS + R + L+++ YNANP SM A+++ + + Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 + + R +AVLGDM E+G+ S + + S +H +GF V +A+ D Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470 + ++ +G + + S++ D DVV++K+S R+ + EE A Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483 >gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis NE061598] Length = 452 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ GA ++V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANGAKAILVSKKQ-----GLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRAT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAFKIRIFSQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ ++L G Sbjct: 366 NYHRKMGQWLKKANLDKIFLFG 387 >gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Bacteroides xylanisolvens XB1A] Length = 431 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 111/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEGDQRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 DCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L K I F+++D+ + + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDAITFIHHDNPYLMNISQGLNLISYGTEDDLYVNGRITGNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G+ +V IG + N L + I + +AL+ + P+ Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALAEYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFQNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S + H + + + + VWL G Sbjct: 357 DSPAEHQKIVDYIKESDFEKVWLVG 381 >gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] Length = 475 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 132/455 (29%), Positives = 206/455 (45%), Gaps = 42/455 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR++ P F A++G DGHDF AV GA V+ + ++P VD Sbjct: 30 VVIDSRAVVPGALFVALRGERADGHDFAAAAVAAGAAGVLAQR----PLDDPALPAVIVD 85 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D + AL +LA V ARL + T++ +TGS GKT+TK+++ L T A GS+NN I Sbjct: 86 DAVAALGRLAGGVLARL-PQVTVVGVTGSAGKTSTKDLIAQVLRRHGPTVAAEGSFNNEI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLT+ R + E+G +G + +L + P I V+ + AHL F E IA Sbjct: 145 GHPLTVLRADEQTRHLVLEMGARGIGHVAYLCRVAPPRIGVVLNVGSAHLGEFGDREAIA 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---------KSKNADF 258 AK E+ E L G LN DD + A++ A + +FG + D Sbjct: 205 RAKGELVEALPADGAAVLNADDPLVRAMAARTAA----EVLTFGRAADADVRAADETLDA 260 Query: 259 QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + R ++ + + V+L+ +H G H N L + V+ +AL Sbjct: 261 RGRPRFTLVTPRGSAPVELR------LH---GRHAVGNALAAAAVALRAGMAVEAIARAL 311 Query: 318 SVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S P R+R + + T+++++YNANP SM+AA+ ++ ++ GR A L Sbjct: 312 SQAAPL----SRWRMEVTERPDGVTVVNDAYNANPESMRAALEAVAHMARAAGGRAFAAL 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---- 431 G+M E+G S + H + + ++ + + G L D R E + Sbjct: 368 GEMAELGARSVAEHEKIGQHVARNGYAGLVAVGEAAAPLLDGA-RQAGSWTGECVQVDDV 426 Query: 432 -GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L DVV+VK S G R+ LL Sbjct: 427 GAAVTALSERLRPRDVVLVKGSRVAGMERVAQGLL 461 >gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] Length = 468 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I D+R++ + A++G +D H F AV +GA V+V+ + L +P Sbjct: 24 VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141 V D AL +A A + + ++A+TGS GKT+ K ML A S YA G Sbjct: 80 VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P + DF ++E+G LG+I +LT +V P +A++ IAPAHL Sbjct: 140 NRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLERMG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A K EI+ L GT +N DD+F + + G + FG AD Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGC-AVLRFGLQATADVTAY 258 Query: 262 KWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 Q SE S ++ V QG+ + V G H N L + + + L + Sbjct: 259 SL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAGLGL 316 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 GR + G LID+SYNANP S+ AI L+ S G VLGDM Sbjct: 317 ARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAS----GPGWLVLGDMR 369 Query: 380 EMG 382 E+G Sbjct: 370 ELG 372 >gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL001PA1] Length = 485 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 116/391 (29%), Positives = 170/391 (43%), Gaps = 41/391 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317 Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 D +ALS + R + L+++ YNANP SM A+++ + + Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHID 391 + + R +AVLGDM E+G+ S + + Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE 406 >gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hydrogenobaculum sp. Y04AAS1] gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hydrogenobaculum sp. Y04AAS1] Length = 446 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 122/431 (28%), Positives = 207/431 (48%), Gaps = 31/431 (7%) Query: 18 SIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTD 73 S+G++ +G F+ + DSR F AIKG DGH +I + + + AG +V Sbjct: 9 SLGLIHEGKPFFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFLVREDF 68 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SS 132 I + D + AL +A R KA ++AI GS GKTTTKE++ L Sbjct: 69 DCKEILAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKELIAHVLPGK 128 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + KTY ++N+ IG+P + D+ + + E+G + L +++ LT++ + HI VI++I Sbjct: 129 VHKTYK---NFNSQIGLPKVVITADDDIGYLVLEMGATALEDVKKLTNIAKQHIGVISSI 185 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL +F IE + E+F+ ++ SF++ K + L SF + Sbjct: 186 GEEHLESFGSIENVVKGNFEVFDSPNLLSGVYPKAFHSFYK----KEYGL------SFCR 235 Query: 253 SK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + +AD +++ E + E+ ++ V+ GI A++ +G+++ D Sbjct: 236 FRDDADIRVKNVYIDEEGTHFEIMGIRLTIPVLSIGI----AESAAAAVGVLASFGIDWK 291 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 F +GR + + +G F +ID++YNANP S+K AI I + + Sbjct: 292 ELKDRFESFKGVQGRMQ----LIKKGPFRIIDDTYNANPVSVKNAILT---IDSFKDFNK 344 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETM 430 I VLGDM EMGE S++ H + +L +I++V+L G + D L S V Y + Sbjct: 345 IIVLGDMLEMGEYSKALHEKVGAMLKSSHINNVYLYGSDMKYAYDVLKLSNKEVFYFDNQ 404 Query: 431 DGLFLFIQSSL 441 + L + SL Sbjct: 405 EELSFHLVKSL 415 >gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] Length = 951 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 111/383 (28%), Positives = 185/383 (48%), Gaps = 35/383 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +VPQ + G+S D+R I E F A+ G ++D H+++ A +G + ++ Sbjct: 508 LVPQ--IKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARG----ACAAVVAHAVPD 561 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---Y 137 +P + D AL ++ A R + ++A+TGS GKTTTKEM++ L+ + Sbjct: 562 AKLPQLVLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEWQGEAGRL 621 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A G+ NN IGVPLTL R+ + +FELGM+H GEI L + P +A++T H Sbjct: 622 ATAGNLNNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPTVALVTNAQREHQ 681 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +E +A L + G D+ + + A + + + FG D Sbjct: 682 EFMHSVEAVAHENGAAIAALPEDGVAVYPGDEPYSAIWDALAEP---RRVLRFGLQPGLD 738 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--------GYHMAQNMLMTLGIVSILTAD 309 +EQ +V + V G+ G H +N L + A Sbjct: 739 VY-------AEQILADVHAT-RCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGAP 790 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ A++ALS F P GR + ++ G LID++YNANP S++ A+ VL++++ G Sbjct: 791 LEGAVRALSGFSPVAGRMQHKH--MSDGTL-LIDDTYNANPDSVRVAVDVLARMA----G 843 Query: 370 RRIAVLGDMCEMGELSQSFHIDL 392 +R+ VLGDM E+G+ + H+++ Sbjct: 844 KRVLVLGDMGEVGDNGPAMHVEV 866 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 91/386 (23%), Positives = 158/386 (40%), Gaps = 54/386 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IP 84 + +DSR I P + F A G DG +I A+ GA V+ ++ +++ +P Sbjct: 31 LKLDSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDAVAAVADQAPMLP 90 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V G+ +LG L R ++ ++A+TG+ GKT++ + + ALS K IG+ Sbjct: 91 VTGLRALLGELADTWY-GRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGTLG 149 Query: 145 ----------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHI 186 + + V TLA M D G + M S +G + VR + Sbjct: 150 AVLPDGRTLGGDLTTPDVLTVHRTLAAM---RDAGAKAVAMEASSIGIEQGRMDGVRVAL 206 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T + HL +E +AKA +F T + +N DD L A G+ Sbjct: 207 AAFTNLTRDHLDYHGTMERYEAAKARLFRWPGLTAAV-INADDEAGRRLIA-----GLPA 260 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---------SMEVVHHGIGYHMAQNML 297 + G S +AD ++ + + ++ QG+ ++V +G H N+L Sbjct: 261 GMAMGYSLSADPEIPAGMRARD---LQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLL 317 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-------GKRYRCALNQGFFTLIDESYNANP 350 + G++ L + L+ P +GR + A +G ++D Y P Sbjct: 318 LVAGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVD--YAHTP 375 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 ++ A+S L ++ GR I + G Sbjct: 376 DALARALSALRAVATARSGRLICLFG 401 >gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] Length = 454 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 130/471 (27%), Positives = 205/471 (43%), Gaps = 34/471 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T +L A G +G P+ V I DSR F IKG D HDFI + Sbjct: 5 TLKNLALACNGTYVG--PKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQVM 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +K + D+ G P V L A+ +A + + ++ ITGSVGKT+ Sbjct: 63 EKAVLATLSEKDL----GEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVGKTS 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ L+ T G++NN +G+PLT+ R+ + + + E+G+S GE+ L + Sbjct: 119 TKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKI 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP+ VIT I HL + I AK EIF+ L+ I LN DD + L Sbjct: 179 ARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDD---DKLVTVQET 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----VQLQGKSMEVVHHGIGYHMAQNM 296 GIK ++ FG + W + ++ + +S V+ G H N Sbjct: 236 KGIKPVF-FGVENHQGI----WADEIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNA 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + ++ K + GR + +T+ID+ YNANP SMKA+ Sbjct: 291 LAATAVGLTYGLTIEEIRKGIESLQSVSGRFH----IIEAPNYTVIDDCYNANPISMKAS 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VL+ GR++A+LGDM E+G + H ++ + + I + G + D Sbjct: 347 LDVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMAD 402 Query: 417 A---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + V + + L + L GD V+VK+S+ F ++ L Sbjct: 403 AAGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453 >gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] Length = 1024 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 113/364 (31%), Positives = 174/364 (47%), Gaps = 8/364 (2%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR ++ +TGS GKTTT ML A + A G+ N GV LA M D Sbjct: 665 ARRLFTGKLVGVTGSAGKTTTVAMLKHAFNDSGHISATRGNANLPYGVAWNLASMESGTD 724 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + I E+ + + E L RPH+AV+T I AHL IE IA KA IF GL G Sbjct: 725 YMILEIAIGRMKESAVLA---RPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLVDGG 781 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N D F+L+ +++ + I ++G+ + +L ++ +E+Q++G+ Sbjct: 782 IAVINRDTECFDLILHEANKVKAVVI-TYGEHSESAVRLININDKDKE--VEIQVEGRIY 838 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + H NML T + L +D +K L F P GRG+ + ++ + Sbjct: 839 IFGSKVLSKHHISNMLCTAAVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILV 898 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYN 400 IDESYNANP SM+AAI + + + I VLGDM ++G+ ++ H+ L E+LS Sbjct: 899 IDESYNANPLSMQAAIQGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSP-E 957 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 I V L G + LK + V ++++ + + DVV+ K SNS L Sbjct: 958 IRLVVLVGEQMALLKGHITDHAEVIAVDSVEDALEPLIFGIRANDVVMAKGSNSINLNYL 1017 Query: 461 INLL 464 ++ L Sbjct: 1018 VDQL 1021 >gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185] gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185] Length = 432 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 112/385 (29%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +++ A G + V+ Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEGDRRYIL--VN 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTG--TIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 K E+++ L K G TIF+++D+ + + L S+ G + + N+ + +W Sbjct: 194 KGELYDFLRKKGNSTIFIHHDNPYLMNIAKGLNLISYGSGEDLYVNGCITGNSPYLALEW 253 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + G+ + IG + N L + I + +AL+ + P+ Sbjct: 254 K---------AEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRKIDEALAGYTPQ 304 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + A N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G Sbjct: 305 NNRSQLKETADN----TLIIDAYNANPTSMAAALQNFRNMTV---SHKMLILGDMRELGT 357 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S + H + + + + VWL G Sbjct: 358 ESLNEHQKIVDYIKESDFEKVWLVG 382 >gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 476 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 123/409 (30%), Positives = 192/409 (46%), Gaps = 28/409 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVD 89 DSR + F AI G DGH FI + G + T D+ A L +P Sbjct: 35 DSRQYERDDLFVAITGARVDGHRFIPAIARAGGAGALCTTLSEDVPAGFLQLVVP----- 89 Query: 90 DVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DV+ AL A R T+ I ITGS GKTTTKE + L + T SYNN +G Sbjct: 90 DVVKALQATARVRVQRQPETLKIGITGSSGKTTTKEAIAAVLGRVAPTLKTYASYNNELG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIA 207 PLTL R+ + + + E+G +GE+R L + P +VITT+ AHL +F + +A Sbjct: 150 YPLTLLRLEAEHRYAVLEMGAEWVGELRGLCETIACPDWSVITTVGAAHLKHFGSLANVA 209 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQC 266 AK+E+ + L G FLNYDD +K K+ A + IY +G+ A + L ++ Sbjct: 210 IAKSELVQVLSPEGIAFLNYDDPVVRAMKEKTRA---RVIY-YGQGDGAAVRALHVEERG 265 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S ++++ + + V G H L + S +++ ++L P +GR Sbjct: 266 LLGSRFTLRIEDEDVPVQLRLPGTHGITTALAAAAVGSAANIPLESIRESLEALSPVQGR 325 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G A G TLID++YNA S+ A + + +G+R VLG++ E GE ++ Sbjct: 326 GVVKGGAGPNG-STLIDDTYNAIRHSIIAMAQAMQATTIAPQGKRWVVLGELFEQGEHTR 384 Query: 387 SFHI--------DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 H+ + ++ L + + ++ G AL+ +PR H+S Sbjct: 385 DEHLASGLGLAGKVDYLVVLGDNARYYMEG----ALQAGMPRKAIYHFS 429 >gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 494 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 22/366 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ + D+R++A + A++G +DGHDF AV +GA ++V+ + A L +P Sbjct: 23 MIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPA----LHVPQ 78 Query: 86 FGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYAC 139 V + AL ++A A R +AT +IA+TGS GKT+ K +L L+ + YA Sbjct: 79 VVVANTELALARIA-AGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVDGITAYAN 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN IG+PL + P D D ++E+G G+I +LT + RP +A++ IAPAHL Sbjct: 138 PGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLER 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNAD 257 + +A K I+ L G +N DD+F + + + L + + +G +A+ Sbjct: 198 MGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAE 257 Query: 258 FQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R+ + + ++ QG++ VV G H N L G+ L A + I A Sbjct: 258 ITARQLRLHAAGAQFVLATPQGEA-PVVLPLPGRHNVLNALAATGLA--LGAGIALPIIA 314 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + + G++ L G LID+SYNANP S+ AAI L+ GEG VLG Sbjct: 315 AGLAQATQVAGRQIAHTLATGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLG 369 Query: 377 DMCEMG 382 DM E+G Sbjct: 370 DMRELG 375 >gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] Length = 468 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 232/487 (47%), Gaps = 51/487 (10%) Query: 4 LWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 LW DL ++I G I+P F + DSR + P AF AI+G DGHD+I A Sbjct: 5 LWKVSDLAESIGASWWGEDIILPDFF----TADSREVRPGAAFVAIRGNAEDGHDYIKDA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVA---ARLRSKATIIAIT 114 + +GA L++ + LSI V V+D + L ++A A A L + +IAIT Sbjct: 61 LHQGASLIIAEKGRIPQ--GLSIRDRAVIEVNDSVVDLARMASAYLSACLPDE--VIAIT 116 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTT+E+L + + S+N IG LT+ MP + I E+G + GE Sbjct: 117 GSVGKTTTREVLKKCFEGMPLVFGAEKSFNTLIGCSLTILAMPAGTNVLILEMGTNKPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + P +IT ++ AHL +E + +AK EI T+ N D+ Sbjct: 177 IEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS-PHLKTLIFNADNENL-- 233 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-----------VQLQGKSMEV 283 ++A G +G K +RK + QS + ++ + + Sbjct: 234 ----ANAAG----QVYGTCKKIGVGVRKGEVRICQSTFDLVENLPRLKTTIRWEDGVISD 285 Query: 284 VHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 ++ G+ G H + +++ L + L ++ A++ L GRG+ + + +I Sbjct: 286 LYCGLWGTHNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVFS---TRAGAVII 342 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+SYNANP+SMKA+++ S + +GR++A+LG M E+G+ H ++ + S + + Sbjct: 343 DDSYNANPSSMKASLNTFSTVEV--KGRKLAILGSMKELGKEESVLHEEI--LRSTHFLD 398 Query: 403 HVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 ++L G + +P RS V S+ + + + + GD V++K S+S + Sbjct: 399 ALFLVGEEWKVPLEKMPEHERSKIVIVSK-VQSFAVELAKMIRSGDGVLIKGSHSHHLEK 457 Query: 460 LINLLLE 466 ++ +L+E Sbjct: 458 VVLILME 464 >gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] Length = 465 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 115/422 (27%), Positives = 196/422 (46%), Gaps = 23/422 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V + DSR P F + G DGHDF AV++GA V+ + + ++ PV Sbjct: 1 MVTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRPLP----DVAAPV 56 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D + AL LA R +++A ++ +TG+ GKT+ KE L L+ KT ++NN Sbjct: 57 LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALNHNN 116 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+P T+ D DF + E G+SH G++ L ++RP + +I + P H G Sbjct: 117 QIGMPCTVLNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLILNVGPGHTEGL-GDRG 175 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSK---NADF--- 258 +A KA + L + G ++ D + +L++ ++ A G K +S G + AD+ Sbjct: 176 VAWHKARLLAHLAQGGLGLVSAD--YPDLVR-EAGATGAKLRFFSAGAHEVEYRADYVGP 232 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + + + L G + V G + A+N + +L + L Sbjct: 233 ATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLLGLSPAEIAEGLG 292 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGD 377 R R R G + +ID++YNANP SM+ +L + GR + VLG+ Sbjct: 293 RAQLPPQRFNRERV----GAWEIIDDTYNANPLSMR---RMLETAAGQARGRAFVPVLGE 345 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G ++++ H +L +L+ S V+ G H ++ L R + +DG F+ Sbjct: 346 MGELGAVAEALHEELGRLLADLGPSAVFWKGGHADEVRAGLARGGYDGPWLPVDGPESFM 405 Query: 438 QS 439 + Sbjct: 406 AA 407 >gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] Length = 470 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 176/397 (44%), Gaps = 43/397 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-----IP 84 IS DSRS P + F AIKG +D HDF+ V ++ A++ S + +P Sbjct: 29 ISTDSRSAGPGDLFVAIKGDRFDAHDFLPD---------VAARNVTAALASRTPQDWNVP 79 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIG 141 V D L LA R + ++A+TGS GKTT KEM+ A A G Sbjct: 80 TLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN IG+PLTL R+ + ELGM+H GE L + P +AV+ H + Sbjct: 140 NFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSDLAKIAEPTVAVVNNAQREHQEFMA 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E +A A + L G DD++ + + A G + + DF L Sbjct: 200 TVEAVALEHASVIHALSPQGIAVFPADDAYASIWRVA--ATGNRIM---------DFALN 248 Query: 262 KWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 ++ +E + + + +EV +G H A N L +D Sbjct: 249 SAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNALAATSAALAAGVSLDAI 308 Query: 314 IKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISPHGEGRR 371 + L F +GR + + L T+ID++YNANP SM+AAI VL+ + +P R Sbjct: 309 RRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAPRPAP-----R 363 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + V+GDM E+G+ +FH ++ I ++ G Sbjct: 364 VLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMG 400 >gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] Length = 449 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 134/441 (30%), Positives = 200/441 (45%), Gaps = 19/441 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V + D+R + AIKG +DGH ++ A++ GA V+ D S P+ Sbjct: 24 LVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETALKNGALAVLSQQD------SQVRPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD A +A R ++AITGS GKTT KE L+ L+ K + NN Sbjct: 78 VLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKTTIKEWLSQCLAERVKVLKTEKNNNN 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL + + + E G S +GEI L + P IA+I+ + +H F IE Sbjct: 138 QIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQITTPDIAIISNASGSHYEGFGSIEG 197 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA K + GL G LN+DD +F+ L + SFG AD ++ + Sbjct: 198 IAKEKGALLTGLTAEGVAILNHDDPWFDYWVG---LLDKRACVSFGFGSGADLVAKQVEL 254 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S+ S + QG+ V+H + G H N + L + L ++A ++LS P Sbjct: 255 FSQSSKSILCYQGEEY-VLHLAVPGKHQVANAMAVLLALLNLGVTFESACESLS--RPLV 311 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 + LN L D YNA+P S++AAI VL S +G++ VLG + E+GEL Sbjct: 312 IDKRLEFQYLNSQALVLND-CYNASPKSVEAAIDVLMSQS---QGQKWLVLGALGELGEL 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H L E + ++ + G +A K R Y E FI+ L Sbjct: 368 EEKIHQQLGEYAAFAGVTGLISVGPIAAIAAKAYEERGGVAVYCENNLQAAEFIK-PLGK 426 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 + ++VK S S ++I +L Sbjct: 427 ENAILVKGSRSAQMEQIIKVL 447 >gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 370 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 11/327 (3%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P V D A +LA R++ A ++A+TGS GKT+ KEM LS T + Sbjct: 2 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASN 61 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F Sbjct: 62 FNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGS 121 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261 + +A AK EI+ GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 122 LAGVAKAKGEIYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAA 178 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S + +Q S++V+ G H N L + + A + L+ Sbjct: 179 NIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALK 238 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GR + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+ Sbjct: 239 AVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAEL 291 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 G S++ H+ + E I V +G Sbjct: 292 GAESEACHLQVGEAAKAAGIDRVLSTG 318 >gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 492 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 130/477 (27%), Positives = 204/477 (42%), Gaps = 56/477 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++IDSR F IKG DGH FI +++GA + + S S P Sbjct: 28 VSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQGALCTLSEHPL-----SDSFPYI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL +A R ++ I+GSVGKT+TKEM+ L G++NN Sbjct: 83 LVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTAGNFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + + + E+G+S E+ L + +P I V+T I HL N + + Sbjct: 143 IGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVAQPDICVLTNIGQCHLENLGDRDGV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------------------------ 242 AK E+F +I LN DD + A HA Sbjct: 203 RKAKTEMFAHRRPGASIILNGDDDKLSEI-ATVHAASFSKQDGTTVVPYSDSTHDETSAA 261 Query: 243 ------GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G T FGK + F + + + + ++ V+ G HM N Sbjct: 262 SAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHAPAGDFTVIISIPGAHMVYN 321 Query: 296 ML--MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L +GI LT D + T I+AL P GR + T++D+ YNANP S Sbjct: 322 ALAGTAVGIELGLTLDEIKTGIEAL---QPVAGRNHM----IETEHLTILDDCYNANPVS 374 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 MKA++ VLS R++A+LGDM E+G H ++ + + + G Sbjct: 375 MKASLDVLSTALT----RKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCCIGTLSK 430 Query: 413 ALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A+ D + + Y ET + + S + + D ++VK+S+ F +++ L Sbjct: 431 AMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTILVKASHGMAFEEIVHAL 487 >gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] Length = 435 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 122/405 (30%), Positives = 196/405 (48%), Gaps = 33/405 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + I+S + + F AI+G G+ +I A +KGA V+ D + F Sbjct: 25 INNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA--YVIYDDKTKK--TPYPKAF 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D + L K A R II ITGS GKTT K+++ LS+ K G+ NNH Sbjct: 77 LVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQLLSTKYKGKKTEGNLNNH 136 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P++L R DF + E+GMS GEI L + +P +IT I +HL E + Sbjct: 137 IGLPVSLLRAENSDDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRENV 196 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK+EI + ++ +FLN DD F L GIK + + GKS AD++ + Sbjct: 197 FKAKSEIIKHVK--AKMFLNGDDPFLGDLP------GIK-VSADGKS-TADYRAKNINLS 246 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323 + + ++ +G ++E + IG H N+L + I I T D+ K + + Sbjct: 247 GDGTKFDLN-EGLTLET--NLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKL---- 299 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R++ + G I+++YNA+P SM+ AI S I + + ++ +LGDM E+GE Sbjct: 300 --TAMRFQ-KIENGNIIYINDAYNASPISMEKAILTFSDI--YNDRYKVVILGDMLELGE 354 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 FH +L ++L + + L G + L + + H+ E Sbjct: 355 KDAEFHEELEKILRNTKQNEILLYGSLMKNLYEKIKDMNVFHFDE 399 >gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 482 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 25/478 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++QA + + ++G +IDSR++ Q F A +G DG+ + A+ G Sbjct: 4 CTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAG 63 Query: 65 AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117 A VV+ + + L+ + DD L +LA R ++ T++ +TGS Sbjct: 64 ASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSC 123 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK+ML LS+ +TY ++NN IG+PLT+ P D + + E+GM+H GEI Sbjct: 124 GKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISR 183 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-----YDDSFF 232 + + +P IAVIT I +HL + IA AKAEI + + L +D F Sbjct: 184 MALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDF 243 Query: 233 ELLKAKSHALGIKTIYS-FGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289 +++A + S G+ ++ + K + + V G +V G Sbjct: 244 TTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAG 303 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + L + IL D A AL H K+ R +ID+SYNA Sbjct: 304 KACVIDACFALRVCEILGVSYDKACCAL--LHMKQVH-MRMEEIKKPHLPLIIDDSYNAA 360 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PAS+ A+ VL Q + GRRIA+LG++ E+G + H + ++ N+ V G Sbjct: 361 PASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGS 418 Query: 410 -HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 H + +A S + Y +D ++ L DV++VK+S S + + Sbjct: 419 DHAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 476 >gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 492 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 130/477 (27%), Positives = 205/477 (42%), Gaps = 56/477 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++IDSR F IKG DGH FI +++GA + + S S P Sbjct: 28 VSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQGALCTLSEHPL-----SDSSPYI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V AL +A R ++ I+GSVGKT+TKEM+ L G++NN Sbjct: 83 LVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTAGNFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ ++ + + + E+G+S E+ L + +P I V+T I HL N + + Sbjct: 143 IGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIAQPDICVLTNIGQCHLENLGDRDGV 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------------------------ 242 AK E+F +I LN DD + A HA Sbjct: 203 RKAKTEMFAHRRSGASIILNGDDDKLSEI-ATVHAASFSKQDGTTVVPYSDSTHDETSAA 261 Query: 243 ------GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G T FGK + F + + + + ++ V+ G HM N Sbjct: 262 SAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSCKIHTPAGDFTVIISIPGAHMVYN 321 Query: 296 ML--MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + +GI LT D + T I+AL P GR + T++D+ YNANP S Sbjct: 322 ALAGIAVGIELGLTLDEIKTGIEAL---QPVAGRNHM----IETEHLTILDDCYNANPVS 374 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 MKA++ VLS R++A+LGDM E+G H ++ + + + G Sbjct: 375 MKASLDVLST----ALTRKVAILGDMFELGTKELLLHREVGTYAAEKKLDLLCCIGTLSK 430 Query: 413 ALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A+ D + + Y ET + + S + + D ++VK+S+ F +++ L Sbjct: 431 AMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTILVKASHGMAFEEIVHAL 487 >gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] Length = 494 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 134/482 (27%), Positives = 229/482 (47%), Gaps = 50/482 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78 P+ G++ DSR P + + A+ G DGHDF+ A+ GA +V + ++ Sbjct: 23 PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L V V D A+ +A R +IA+TGS GKTTTK ++ L+S T A Sbjct: 83 AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP TL D + E+GM G++ L VRP ++ + +H+ Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202 Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKN 255 E IA AKAE+ L E TG F+N DD + + ++ A+ A ++T+ G + Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETVLFDGSAAA 262 Query: 256 ADFQLRK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGY------HMAQNMLMT 299 A+ + + W +EQ +E+ QG+ + H +G+ A+ L Sbjct: 263 AERRAQADAAEAARPAVW---AEQ--VELDEQGRPRFRL-HAVGFADAPEEETARCALTL 316 Query: 300 LGIVSILTADVDTAI------------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G+ ++ A TA+ AL+ P+ GR + R +G FT+++++YN Sbjct: 317 RGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRA---RGGFTVVNDAYN 373 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANP SM+A+++ + G+ +AVLGDM E+G + + H + E + + + Sbjct: 374 ANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV 431 Query: 408 GFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 G L + DA R+ + + ++ +F + + + GD V+VK+S+ G R++ Sbjct: 432 GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHFMGLTRVVEG 491 Query: 464 LL 465 L+ Sbjct: 492 LV 493 >gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 491 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 25/478 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++QA + + ++G +IDSR++ Q F A +G DG+ + A+ G Sbjct: 13 CTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAG 72 Query: 65 AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117 A VV+ + + L+ + DD L +LA R ++ T++ +TGS Sbjct: 73 ASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSC 132 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK+ML LS+ +TY ++NN IG+PLT+ P D + + E+GM+H GEI Sbjct: 133 GKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISR 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-----YDDSFF 232 + + +P IAVIT I +HL + IA AKAEI + + L +D F Sbjct: 193 MALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDF 252 Query: 233 ELLKAKSHALGIKTIYS-FGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289 +++A + S G+ ++ + K + + V G +V G Sbjct: 253 TTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAG 312 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + L + IL D A AL H K+ R +ID+SYNA Sbjct: 313 KACVIDACFALRVCEILGVSYDKACCAL--LHMKQVH-MRMEEIKKPHLPLIIDDSYNAA 369 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PAS+ A+ VL Q + GRRIA+LG++ E+G + H + ++ N+ V G Sbjct: 370 PASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGS 427 Query: 410 -HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 H + +A S + Y +D ++ L DV++VK+S S + + Sbjct: 428 DHAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 485 >gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 164/369 (44%), Gaps = 17/369 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 V G ++DSR + FFA+ G DGH F+ A+ GA V+ + + P Sbjct: 25 VAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLAEVLPGGPPPGT 84 Query: 85 -VFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D AL LA R R ++ ITGSVGKTTTKEM L G+ Sbjct: 85 AVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQRFAVLKTAGN 144 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YN IG+PL L + + E+ M LGEI L + P I V+T +A +HL Sbjct: 145 YNTDIGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAEPDIGVVTVVAESHLEFLGS 204 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +E+IA AK E+ E L G LN D + A++ + +FG AD + Sbjct: 205 LEKIAQAKGELVEALPADGVAILNAGDPRVRAMAARTR----ARVLTFGVEGGADVRAVA 260 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + +++ G V + G L + +L D D L Sbjct: 261 VESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAVGVVLGLDADAIAAGLGRAR 320 Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + Q G +TL + YNA+P S AA+ L Q++ G+ R +A+LGDM E Sbjct: 321 PAS-----LRSEIRQAGSWTLFIDCYNASPTSTAAALQALRQVA--GDRRAVAILGDMFE 373 Query: 381 MGELSQSFH 389 +G+ ++ H Sbjct: 374 LGDWAEEGH 382 >gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] Length = 510 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 139/493 (28%), Positives = 207/493 (41%), Gaps = 74/493 (15%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 PQ V G + DSR I + F A+ G DGHDF A++KGA V V + ++ Sbjct: 23 PQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAATAIEKGA--VAVLGARPVGVPAI 80 Query: 82 SIPVFGVDD----------------VLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122 +PV G D VL AL LA A T++ +TGS GKT+T Sbjct: 81 VVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYCTKSLAADGLTVVGVTGSAGKTST 140 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L + +T A GS+NN IG P T R F + E+ G I L L Sbjct: 141 KDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRATASTKFLVLEMSARGEGHIAALAKLA 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I V + AHL F E IA AK E+ E L G LN DD+ + +++ A Sbjct: 201 PPRIGVELNVGTAHLGEFGSREAIARAKGELVEALPVDGVAVLNADDAAVAAMASRTAA- 259 Query: 243 GIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + ++ +G A+ Q+R ++ + G + V G H N L + Sbjct: 260 --RVVF-YG---TAEAQVRATDVVLDAHARAAFTLHTAGGTAPVALKVHGEHQVHNALAS 313 Query: 300 LGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + TA V A+ P +R G T+++++YNANP +M+AA Sbjct: 314 AAVGLECGATTAQVAEALSGAGAASP-----RRMDVFTTDGGVTVVNDTYNANPDAMRAA 368 Query: 357 ISVLSQISPHGEG----------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L +S H E R AVLG+M E+GE S H L L +I+ Sbjct: 369 LRSLVLMSEHDEAGERLPGRDRRRTFAVLGEMGELGEESILEHDRLGRFLVRLDITSTIC 428 Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLF--------------LFIQSSLVDGDVVVVKS 451 G R++H + M+G + +++ L GD+V+VK+ Sbjct: 429 VGSS---------RAVHALWQGAVMEGSWGSEAIRVDTRAEAVERLRAELRPGDLVLVKA 479 Query: 452 SNSCGFYRLINLL 464 S S + + L Sbjct: 480 SKSEKMWEVAESL 492 >gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R3021] gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 22.4-21] Length = 399 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 186/381 (48%), Gaps = 31/381 (8%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S+ +P V D AL +LA R + +A+TGS GKTT KEM L Sbjct: 16 SILVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEA 75 Query: 140 I----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + G++NN IGVPLTL R+ F + ELG +H EI + T LV+P+ A+I IAPA Sbjct: 76 VLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPA 135 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKS 253 HL F + + AK EI+ GL K G +N + + ++ + + +HA+ Y GK Sbjct: 136 HLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQKEISNHAIQ----YFNGK- 190 Query: 254 KNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTA 308 D+ ++ Q +EQ ++ V QG+ +++ +G H +N L + V A Sbjct: 191 ---DYSVKNV-QGNEQGSTFTLVSPQGE-IDISLPYLGEHNVKNALAATALAMNVGATLA 245 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 DV ++ S + +G+ + + L+D++YNAN S+ AAI VL + Sbjct: 246 DVKAGLEQRS-----QVKGRLFPIQVTPNLL-LLDDTYNANKDSLCAAIDVLKSY----D 295 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 RI + DM E+GE S + H ++ + ++L N+ V G + +A+ +E Sbjct: 296 AFRILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEAVLGKHFTDKTE 355 Query: 429 TMDGLFLFIQSSLVDGDVVVV 449 +D L I++ L VVV Sbjct: 356 MVDFLVPLIENQLQQNKKVVV 376 >gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] Length = 474 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 131/470 (27%), Positives = 209/470 (44%), Gaps = 51/470 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ A+ G + P V G + DSR + F A G DGHD+ AVQ G Sbjct: 5 SLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAAAVQAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 A V+ ++ +P+ V D L A+ +LA A R + T+I +TGS GKTTTK Sbjct: 65 AAAVLGTREVP------GVPMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ + + +T A GS+NN +G P T + + + E G +G +R+L + Sbjct: 119 DLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYLVLEKGARGIGHVRYLCEVAP 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I+V+ + +H+ F E IA AK E+ E L G LN DD + + ++ A Sbjct: 179 PRISVVLNVGVSHIGEFGSQENIALAKGELVEALPADGLAVLNADDPLVDAMAGRTTA-- 236 Query: 244 IKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +G++ +AD + + ++ V +G S V G H N L Sbjct: 237 --RVVRYGEAAHADVRAVDVTLDERGRPAYTLVTPEG-SATVRLALTGRHQVWNTLAAAA 293 Query: 302 IVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L ++ A+ L + +R T+ID+SYNANPASM A+ Sbjct: 294 VARELGMPLVEIAVALGELGLVST-----RRMDVFERTDGVTVIDDSYNANPASMSVALR 348 Query: 359 VLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + G GRR AVLG M E+GE H ++ + + + + + G + A Sbjct: 349 ALAGV---GAGRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLLVVG------EAA 399 Query: 418 LPRSIHVHYSETMDG--------------LFLFIQSSLVDGDVVVVKSSN 453 P +H+ T G ++S L GDVV+VK S Sbjct: 400 AP----IHHGATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKGSR 445 >gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] Length = 468 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 109/391 (27%), Positives = 177/391 (45%), Gaps = 27/391 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR+ P + F A+KG +D HDF+ +GA Sbjct: 7 GEAARLIPGATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGA-- 64 Query: 68 VVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +VA + +++P + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 65 ---SAALVAHVPAGVTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMI 121 Query: 127 T---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 A A G+ NN +G+PLTL R+ + E+GM+H GE L L Sbjct: 122 ASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEILARLTA 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ H + +E +A A + L G DD++ + + + Sbjct: 182 PTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNR 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I + D Q+ E + + + V +G H A+N L Sbjct: 242 ILDFALHDAGRQNDAQVTGRLHGGE---LAIDTPAGVVTVRLRALGEHNARNALAATAAA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-S 361 + + L F P +GR + + A + T++D++YNANP SM+AAI VL + Sbjct: 299 LGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAA 358 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 Q +P R+ V+GDM E+G+ +FH ++ Sbjct: 359 QPAP-----RVLVIGDMGEVGDEGPAFHREV 384 >gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] Length = 467 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 207/466 (44%), Gaps = 56/466 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASI-GS 80 F + DSR + P F A+ G DGH F+ AV GA V+ + AS+ GS Sbjct: 26 FPFSVCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVLALRGPGREARASLPGS 85 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + VD V AL LA R R + ITGSVGKTTT++++ L+S++ ++ Sbjct: 86 ADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTTRDLILRVLASVEPSHGAP 145 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 SYN IG T+ MP D + E G +H GEI L P +T + PAHL Sbjct: 146 KSYNTRIGCASTVLGMPPDTRNLVLEYGTNHPGEISALVASFPPQELFLTEVCPAHLEGL 205 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-------LG---------I 244 ++ + +AK E+ E + + N+D++ LL+ HA LG I Sbjct: 206 GDVQGVLAAKLELLESRQAERVTY-NFDNA---LLRDALHASFSAERSLGVGVSGGEVRI 261 Query: 245 KTIYSFGKSKNA--DFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + SK D LR+ + +SW +L G+ H + A ++ + G Sbjct: 262 ERAEPRWTSKGPVLDLHLRE----AGRSWSFASRLWGR-----QHAYAWAFAWSVALRRG 312 Query: 302 IVSILTADV-DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +V +T++ P GRG R ++ ++DE+YNANPASM A+ L Sbjct: 313 VGEEALREVAETSL-------PLPGRG---RVLSDREGLWILDETYNANPASMGVALENL 362 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +S G G A+LG M E+GE S +H ++ + L + L G L+ LP Sbjct: 363 HLLSSQGAGVSWAILGGMRELGETSPHWHREI--LGKLRGVDGAVLVGEEWAPLRSDLPD 420 Query: 421 SIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLL 464 + D L + L ++++K S S G RL+ L Sbjct: 421 QVRW----VPDTAVLLEEGGPVLPKHALLLLKGSRSYGLERLLPLF 462 >gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] Length = 453 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 12/326 (3%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + +P V D AL +LA R + A ++A+TGS GKT+ KEM L + Sbjct: 73 VDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMAAAILRECGEVLYTA 132 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IGVPLTL R+ DF + ELG +H+GEI + T L RP A++ +A AHL F Sbjct: 133 GNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQTALVNNLAAAHLEGF 192 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADF 258 + +A AK EIF GL G +N D++ + ++ L KT++ F ++ DF Sbjct: 193 GSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQSM---LNDKTVWRFSPQAAEGVDF 249 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ + + + + G H N L + + A ++ + L Sbjct: 250 FASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAAALAMSVGASLEAVRQGLK 309 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 GR + AL + L+D+SYNAN SM AA VL+++ G R+ V+GDM Sbjct: 310 QLQGVPGR--LFPIALTENKL-LLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDM 362 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHV 404 E+G ++ H + E L I V Sbjct: 363 AELGADAEECHRQVGEAARLAGIDKV 388 >gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 315 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 18/234 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 23 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 78 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 79 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 133 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 134 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 193 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + I AK EI EGL+ GT LN +D F + + ++ G + + +F + +A Sbjct: 194 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSA 244 >gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] Length = 1011 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 123/489 (25%), Positives = 201/489 (41%), Gaps = 34/489 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W LL A G G + + DSR + P + F A+KG +DGH +I A ++ Sbjct: 523 WNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQR 582 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 AG +V + + + V D L AL LA R L + AITGS GKTT Sbjct: 583 AGAIV--AEWMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITGSSGKTTV 640 Query: 123 KEMLT-----------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 KEM+ + ++ KT G++NN +G+PL+L + + E+GM+ Sbjct: 641 KEMVASIFAEALQGSRTGMDAVLKTR---GNFNNLVGLPLSLLPLEAGHRLAVVEMGMNV 697 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI L + P I I + PAHL + +A+AK E+F G+ +N DD Sbjct: 698 PGEIARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRPEAVRVVNLDDPH 757 Query: 232 FELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGI 288 K +G S G+ + + EQ + ++G V Sbjct: 758 VRAQAKKFAGEQIGFAVTPS-GRKFGPQVRATRPDNLGEQGMRFTLHIEGWRARVTVPVF 816 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N + I + + L + P KR G +++++YNA Sbjct: 817 GAHNVSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSV--DKRLAVTELPGGLKVVNDAYNA 874 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NPASM A + ++ H R +A LGDM E+G S+ H + +++ + L+G Sbjct: 875 NPASMAAGLRTVAAFG-HRGCRHLAALGDMLELGAASEDLHAGIGALVASLGYDFLALTG 933 Query: 409 FHVLALKDALPRS--------IHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYR 459 + A + + + D ++ + + L GD +++K S + Sbjct: 934 MQATVMARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAGDWLLIKGSRGMRMEQ 993 Query: 460 LINLLLEEF 468 L++ L + Sbjct: 994 LLDELEQRL 1002 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%) Query: 6 TFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T L+QAI + G V V I+ DSR + P F A++G DG +I A+ Sbjct: 3 TLAKLVQAIAPGANRRLSGTVLAQPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAI 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 G G + V D+ + ++PV VDD AL +LA A S+ ++AITG+ GK Sbjct: 63 --GKGCLAVVVDVDEGVDEWNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTYACIGSYN 144 TT ++ L + IG+ N Sbjct: 121 TTCSWLIEEMLVASGFRPGVIGTVN 145 >gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf [Rhodococcus equi 103S] gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF [Rhodococcus equi 103S] Length = 506 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 218/506 (43%), Gaps = 56/506 (11%) Query: 1 MNPLWTFHDLLQAIQG--HSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD-- 55 M P+ T + QA+ G H + P V+G + DSR I P F A+ G DGHD Sbjct: 1 MIPM-TLAQIAQAVGGTLHDVDD-PSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHA 58 Query: 56 -------FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102 + + G+ + + + + G+ ++ + D VL AL KLA A+ Sbjct: 59 AGAVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDRDGSGAAVLAALGKLARASV 118 Query: 103 -RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 RL +++ T++ +TGS GKT+TK++L LS + A GS+NN +G P T R D Sbjct: 119 DRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADAD 178 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F + E+ G I L + P I V+ + AHL F E IA K E+ L Sbjct: 179 TRFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPS 238 Query: 220 T---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G LN DD + ++ A + G S NAD + + +Q+ L Sbjct: 239 AADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVR-LDDQARASFTL 293 Query: 277 QGKSMEV-----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + V VH G H N L + A +D AL P R R Sbjct: 294 TCAAGAVPVTLAVH---GEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSAR--RME 348 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSF 388 T++++SYNANP SM+AAI L ++ G G R AVLG+M E+G S Sbjct: 349 VRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVE 408 Query: 389 HIDLAEVLSLYNISHVWL--SGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439 H + +++ + L G V A+ +IHV + ++ Sbjct: 409 HDAIGRFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASA---IALLEQ 465 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 L GD+V+VK+S S G + + + +L Sbjct: 466 ELRAGDLVLVKASQSIGLWEVADAVL 491 >gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603] gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 216/467 (46%), Gaps = 32/467 (6%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +Q I G S I VN + DSR I FFA+ G DGH+FI Q G Sbjct: 11 IQQIIGASATITHDSMVNNLLTDSRKINNPFTSLFFALSGRR-DGHEFIGDVYQAGVRNF 69 Query: 69 VV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 VV D++ L VDDVL AL KLA+ R + +I ITGS GKT K Sbjct: 70 VVFKLPVKVDLLRDANFLV-----VDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIVK 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L L + KK SYN+ IGVPL++ +M + GIFE G+S GE+ L +++ Sbjct: 125 EWLYQLLCADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGISTTGEMERLERMIK 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I ++T + AH FSG E+ K ++F + YD LLK K+ G Sbjct: 185 PTIGILTHMGSAHDEGFSGPEKKLEEKLKLF---THCSMVIYQYD----ALLKYKARVPG 237 Query: 244 IKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 KT +++ + + D + S + ++ +GK +E + I +N ++ Sbjct: 238 -KTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWAT 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVL 360 + L D A L P R L QG ++ID+SYN++ S++ A++ L Sbjct: 297 MLALGYDSQVADDRLERLVPVS-----MRMELKQGINNCSIIDDSYNSDFQSLEIALNFL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +Q + H R +L D+ + G + +A++LS NI V G + A + Sbjct: 352 NQQNQH--QTRTLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVIGVGKAISAQQQLFNI 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y++T D L + + ++ + +++K S S F R+ L+++ Sbjct: 410 PLKYFYADT-DSLLMALADLTLEDETILIKGSRSFEFERISRALVQK 455 >gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromicrobium marinum DSM 15272] gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromicrobium marinum DSM 15272] Length = 458 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 129/445 (28%), Positives = 196/445 (44%), Gaps = 30/445 (6%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +IDSR + P F AI G H DGH + AV+ GA V+ + A P V D Sbjct: 28 TIDSRDVPPGGLFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRPVAA-------PHVLVPD 80 Query: 91 VLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 AL LA A R + + + +TGS GKT+TK++L L + T A GS+NN +GV Sbjct: 81 ATVALGLLARATHDRLDRLSTVGLTGSSGKTSTKDLLAHVLEPLAPTVAPTGSFNNELGV 140 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ R + + E+G G I L + P +AV+ + AH F +++ A A Sbjct: 141 PLTVLRADPSTRYLVVEMGARGRGHIAALCRISPPDVAVVLNVGTAHQGEFGSVDDTAVA 200 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+ E L GT LN DD + ++ + +FG + D +L + Sbjct: 201 KGELVEALGPGGTAVLNADDPRVAAMAGRT----AGQVLTFG--RGGDVRLVDLLTDAAG 254 Query: 270 SWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 G E V IG H N T + L D+ T L+ + Sbjct: 255 HPRITLAHGPDRETFVLPQIGGHHGSNAAATAAVAVALGVDLATVAARLATATVR----S 310 Query: 329 RYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELS 385 +R A + ++D+SYNANP S+ AA+ ++ + G+ GR + VLG+M E+G S Sbjct: 311 PHRMARHVRPDGLVVVDDSYNANPESVAAALRSVADLGAPGDGGRTVVVLGEMLELGADS 370 Query: 386 QSFHID---LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 H LA L + + V V+ AL + + + + Sbjct: 371 ADHHRRIGALARELGIGLVVAVGPGASPVVEGAGALATGV-----PDVAAAVELLHEQVG 425 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 GD+V+VK+S S R++ LL + Sbjct: 426 PGDLVLVKASRSARLERVVTALLAD 450 >gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus sp. RS-1] gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseiflexus sp. RS-1] Length = 490 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 137/478 (28%), Positives = 211/478 (44%), Gaps = 68/478 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP------- 84 IDSR + F A++G DGH+F+ A +GA +V D ++++ SL P Sbjct: 41 IDSRQATSECLFVALRGERVDGHEFLADAAARGARGALVRRDKLSNL-SLERPYAVIDPV 99 Query: 85 --------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + VDD ALN+LA R + +I +TGSVGKT+TKE+ L Sbjct: 100 TGEGLEQATPDSVLLIAVDDPQAALNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVL 159 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +T SYN+ +P+ L ++ D + E+GM GEI L L RP + ++T Sbjct: 160 QRSFRTLKSPRSYNSEASLPIVLLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVT 219 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKT 246 + P+HL IE I AK+E+ + L G LN DD + E+ +A+ Sbjct: 220 NVGPSHLERMGSIEAIQRAKSELPQALPDDGFAILNIDDLRVRAMAEVTRARP------- 272 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +G AD W E LQG S V + G +++ L LG S+ Sbjct: 273 -FFYGLDPAADL----WADSIESRG----LQGISFRVHYQGDAFYLT---LPLLGRHSVH 320 Query: 307 TADVDTAI--------KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 TA + +A+ E R TLID++YNA+PASM AA++ Sbjct: 321 TALAAASAGLLLGMEWEAIIAGLRDESAQLRLLAVPGVNQTTLIDDTYNASPASMLAALN 380 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-------IDLAEVLSLYNISHVWLSGFHV 411 +L+++ GRRIA+LGDM E+G + + H ++A L W++ Sbjct: 381 LLAELE----GRRIAILGDMLELGSVEEEAHRRVGARVAEVARFLITVGRRARWIADE-- 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 AL+ + V + D S L GD+V++K S ++ L + P Sbjct: 435 -ALQAGMAPD-QVWSVDDNDEAADLAMSCLAPGDIVLIKGSRGMLMESIVARLQQRRP 490 >gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coriobacterium glomerans PW2] gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coriobacterium glomerans PW2] Length = 478 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 223/478 (46%), Gaps = 37/478 (7%) Query: 11 LQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + AI G + P V G IDSR + F A G H DG+DF + AVQ GAG VV Sbjct: 9 MTAITGSRLCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAAVQAGAGAVV 68 Query: 70 V----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + ++ ++ V +D L LA R R ++ ITGS+GKTTTK+M Sbjct: 69 LTREPSRELCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGSIGKTTTKDM 128 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ + +A IG+ NN IG+PLT+ P D I E+GMS GEI L+ P Sbjct: 129 VAALLSTRYRVHATIGNRNNLIGMPLTVLSAPEDTQALILEMGMSASGEIERLSRCAAPT 188 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKA 237 A+IT I +H+ + IA AKAEI G+ E++ + L+ +D F + Sbjct: 189 HAIITRIGTSHIGMLGSRDAIARAKAEIVSGMIPWSAPECERSPLLVLSSEDDFTSFISD 248 Query: 238 K-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMA 293 + + G++ I G +AD +R+ + +Q +L G ++ G H Sbjct: 249 RFAEPAGVR-IALAGTRADADVTVRRCRL-DDQGCASFELSFRDGCQLKANLAAPGAHAV 306 Query: 294 QNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q+ + + + + D+ A AL++ R + L G +ID+SYNA+P Sbjct: 307 QDAALAAALAYDLGVSPRDMIAAFGALAITS------HRQQIRLASGGAKIIDDSYNASP 360 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 SM A + +L +S RRIAVLG+M E+GE S+ H + + + + G Sbjct: 361 ESMAAGLDLLLALSG--ARRRIAVLGEMGELGERSERMHALVGAYAAAKQLDLLVCVGHE 418 Query: 411 VL-ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + DA +P + + + + + S L GD+V+VK S G R + Sbjct: 419 AARTMADAARLMGMP-AHRIEIASSAHAVLDRFGSGLGRGDLVLVKGSRFVGLDRFVE 475 >gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483] gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides sp. D2] gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483] gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 431 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 NCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L K I F+++D+++ + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDAITFIHHDNAYLMNIAQGLNLISYGTEDDLYVNGQITDNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G+ +V IG + N L + I + +AL+ + P+ Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S + H + + + VWL G Sbjct: 357 ESPAEHQKIVDYIKESGFEKVWLVG 381 >gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] Length = 466 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 212/477 (44%), Gaps = 36/477 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L +F + A+QG + +GF + +SIDSR++ F ++G DGH +I Sbjct: 1 MKNLLSFDETSIAVQGMLLKNHTKARGF-SSVSIDSRTVKDGSLFVPLRGEKQDGHRYIR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------LNKLAVAARLRSKA-- 108 A++KGA L + + S+ S I + D A L L AAR K Sbjct: 60 SALEKGAVLFFADEKFL-SVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFP 118 Query: 109 --TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + ITGS GKTTTKE+ LS G+ N+ G+PL++ + + + GIFE Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSETGLPLSVFEVRDEHEVGIFE 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 LGM+ GE++ +T ++ P +IT I AH+ + IA K +IF +K F+ Sbjct: 179 LGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFSFFDKDCMGFVP 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D F + L+A LG Y + L+ K+ + + K E+ Sbjct: 239 -DCPFTDFLQA--VPLGKVVCYE-------NTTLKNIKKIESKGMYGSTIFYKDEEICFP 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H +N + + L V + L P GR + QG + + Y Sbjct: 289 LAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQ-----FMQGDVDCLFDCY 343 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP SM AA++V S+ +G++ AVLG M E+G+ S + H + + +I ++L Sbjct: 344 NANPDSMSAALAVFSETKV--QGKKAAVLGSMLELGKESAAAHKKICAQAAASDIDFIYL 401 Query: 407 SGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 G + + +++ MD L + +L GD V++K+S RL Sbjct: 402 FGKEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASRGLALERL 458 >gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CMC 3f] gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CMC 3f] Length = 431 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 186/385 (48%), Gaps = 25/385 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ G +++ A G + VD Sbjct: 16 VTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDKRYIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIGV Sbjct: 74 NCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 134 PTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKT---IYSFGK-SKNADFQLRKWK 264 K E+++ L K I F+++D+++ + + + T +Y G+ + N+ + +WK Sbjct: 194 KGELYDFLRKKDAITFIHHDNAYLMNIAQGLNLISYGTEDDLYVNGQITDNSPYLAFEWK 253 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + G+ +V IG + N L + I + +AL+ + P+ Sbjct: 254 AGKD---------GERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQN 304 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGE 383 R + + N TLI ++YNANP SM AA+ ++ PH ++ +LGDM E+G Sbjct: 305 NRSQLKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVPH----KMLILGDMRELGA 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S + H + + + VWL G Sbjct: 357 ESPAEHQKIVDYIKESGFEKVWLVG 381 >gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase protein [Xanthomonas albilineans] Length = 501 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 20/370 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ IS D+R +A + A++G +DGH F A +GA ++V + + +P Sbjct: 24 IDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLP----QIELPQI 79 Query: 87 GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKK-----TYACI 140 V D AL ++A A R +AT + AITGS GKT+ K +L L + YA Sbjct: 80 VVADTQLALARIA-AGMQRGRATRVAAITGSNGKTSVKALLLAILQYACRLDGGSVYANP 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G++NN IG+PL + P D D+ I+E+G G+I +LT + P ++++ IAPAHL Sbjct: 139 GNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPGDIAYLTDIAPPRVSLVNNIAPAHLERM 198 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + +A K I+ L GT +N DD+F + + A + FG A Sbjct: 199 GSLLGVAQTKGAIYAALPADGTAVINIDDAFGLWFEQQLSAASRPRVLRFGLQHGAHVTA 258 Query: 261 RKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + ++++ ++ + QG++ E G H N L + L L+ Sbjct: 259 TRIRMAADRTHFVLLTPQGEA-ETTLPLPGRHNLLNALAAAALALALDVAPARIAAGLAQ 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR + G LID+SYNANP S+ AAI L+ I G R VLGDM Sbjct: 318 VQPVPGRQISHTL---PGGAVLIDDSYNANPGSLAAAIDALAAIG----GERWLVLGDMR 370 Query: 380 EMGELSQSFH 389 E+G +++ H Sbjct: 371 ELGAGAEALH 380 >gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 509 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 131/475 (27%), Positives = 201/475 (42%), Gaps = 51/475 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR++ P F A+ G DGHDF AVQ GA + V+ V + P GVD Sbjct: 34 VEFDSRAVGPGGLFLALPGARSDGHDFAAAAVQSGA-VAVLAARPVGVPAIVVRPDGGVD 92 Query: 90 DVLGALN------------------KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 GAL II +TGS GKT+TK++L L+ Sbjct: 93 SASGALEHDTDGSGAAVLAALARLAAAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLA 152 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + + A GS+NN +G P T+ R D DF + E+ H G I L + P +AV+ Sbjct: 153 PLGEVVAPPGSFNNELGHPWTVLRATRDTDFLVLEMSARHPGNIAALAAIAPPSVAVVLN 212 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + AHL F E IA KAE+ + + +G + LN DD + ++ A ++ Sbjct: 213 VGTAHLGEFGSREAIAKTKAELPQAVGPSGVVILNADDIAVAAMAEQTDARVVRI----- 267 Query: 252 KSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-----VHHGIGYHMAQNMLMTLGIV 303 S++ + W E + L + EV VH G H N L V Sbjct: 268 -SRDPGSDIDVWAGPVTLDELARPRFTLHTRDGEVDVNLAVH---GDHQVSNALCA-AAV 322 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + R R + + T+I+++YNANP SM+A + L+ + Sbjct: 323 ALECGATPQQVADALAAAGPASR-HRMQVSTRADGVTVINDAYNANPDSMRAGLKALAWM 381 Query: 364 S-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLAL 414 + P G+ R AVLG+M E+G+ + + H + ++S + + SG + A+ Sbjct: 382 ARQTAGGQPGGKRRSWAVLGEMAELGDDAITEHDAIGRFAVRLDVSRLLVVGSGRAMNAM 441 Query: 415 KDALPRSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 TM D ++ L GDVV+VK+SNS G L L+ Sbjct: 442 HHGAVMEGSWGSESTMVADADAALTVLRDELQPGDVVLVKASNSVGLGALAEALV 496 >gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] Length = 446 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 26/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG +DG+ F A++KG +++ A + + + VD Sbjct: 24 ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAEADNDRLIL--VD 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L ++A R + +I ITG+ GKTTTKE+++ L+ + G++NN +GV Sbjct: 82 DCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNNDVGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 142 PKTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNVGRAHLLGFGSFEGVKRT 201 Query: 210 KAEIFEGLEK-TGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQ-----LRK 262 K E+++ L+ G +FLN ++ E+ + + + I ++G+S +A+ Q Sbjct: 202 KGELYDYLKAHDGLLFLNESNADLVEMARQRE----MNRIMTYGQSDDANVQGEVLDCAP 257 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + ++ + + ++ +V H IG + NML + I + ALS + P Sbjct: 258 FLRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVTPEQINHALSHYIP 317 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + A N+ LI ++YNANP+SM AA+ ++ ++A+LGDM E+G Sbjct: 318 ANNRSQLEVTAKNK----LIVDAYNANPSSMAAAVENFKLMNVE---HKMAILGDMRELG 370 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E+S H L + L+ VWL G + A + +V D + I + Sbjct: 371 EVSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRKFKNV------DEVKAEIAAHCP 424 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + +++K SN + L LL Sbjct: 425 ENYYILIKGSNGIKLFELPELL 446 >gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/409 (26%), Positives = 192/409 (46%), Gaps = 18/409 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+ + G + +N + DSR++ P + FF I+G ++DGH+F A +GA Sbjct: 4 TLGDVQHCLTGMAEECREFAVINAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + VV + M + ++PV V D + AL +LA R + ++A+TG+ GKTT KEM Sbjct: 64 -VAVVASRMPEGV---TVPVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKEM 119 Query: 126 LTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 L +S ++ K Y + NN IG+P+++ + + I ELG+S G++ L + Sbjct: 120 LAAVVSRKFTVAKNYR---NLNNQIGLPVSMLKADSGQEVWIMELGISVKGDMEELAVIA 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT + P HL + +A AK+ + + + + GT ++ D + EL A + Sbjct: 177 SPDVAVITNVGPGHLEGLGDVAGVARAKSSLLKYMRQDGTAIVSKD--YPELWAAATELT 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G +S + + + ++ E G H A+N+ Sbjct: 235 GSPVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQGEFTAPFCGDHYAENVACVAAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + + E +R+ C G +ID++YNANP SM S+ + Sbjct: 295 ANALGLPFDDIVAGVQAV---EADCQRF-CCRPMGDALVIDDTYNANPLSM--GRSIRTA 348 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++ + + VLGDM E+G+ +Q+ H +L ++ V+ G H Sbjct: 349 VAMAKDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAVFFKGAHC 397 >gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium phytofermentans ISDg] gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium phytofermentans ISDg] Length = 507 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 123/483 (25%), Positives = 203/483 (42%), Gaps = 51/483 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS +S+ F I G D HDFI A ++G + + + D +A G+ + V+ Sbjct: 29 ISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIRVTLTSKDEIAE-GTEDMVYIKVN 87 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + AL +L R S II ITGSVGKTTTKEM+ A S+ IG+ N+ +G+ Sbjct: 88 HTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMIAAAFSTRSNVLKTIGNMNSQVGL 147 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P + + + GI E+GMS GE+ + + +P +AV+T I +H+ E I Sbjct: 148 PQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKPKMAVVTNIGVSHIGQLKTQENIRKE 207 Query: 210 KAEIFEGLEKTGTIFLNYDDSFF------------------------ELLKAKSHALGIK 245 K I + + LN DD +L + +L Sbjct: 208 KLNIVNYFTEDSILLLNGDDQLLLEIYDEYRKDNSSVKEKTQNNGSVDLSEMTRRSLNKA 267 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTL 300 ++Y+FG + + K E + + + E + I G H N L + Sbjct: 268 SVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNGTKEELVDDITLSVLGKHNILNALAAI 327 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L D A + L + P RG+ + T+ID++YNA+P SMK AI V+ Sbjct: 328 FFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKV----NGITIIDDTYNASPDSMKGAIHVI 383 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------------ISHVWLSG 408 + E ++ V D+ E+G++S+ H ++ E L+ I V G Sbjct: 384 MDMPK--EHKKFIVFADILELGDISKKCHYEVGEYLAKQCKIEKACGKESTFIDEVITIG 441 Query: 409 FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + D + + I+ + F +I+++L DV+++K S ++ L Sbjct: 442 EEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLTKRDVILLKGSRGMKLDLIVERLK 501 Query: 466 EEF 468 EE Sbjct: 502 EEL 504 >gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] Length = 461 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 41/443 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR+ P F A+KG +D HDF+ AV GA + V+ G+ S+P Sbjct: 24 VASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKAVLSGAAALGVSLG-----GNFSVPCV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSY 143 D L L + R + A I A+TGS GKTT KEM A S +K+ + + G++ Sbjct: 79 KCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKTTVKEM---AYSILKQGFNAMCTNGNF 135 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +GVPLTL R+ +D+ I E G SH +I+ + V+ AVIT + AH+ F Sbjct: 136 NNDVGVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSEFVQADAAVITNVGQAHIEGFGSA 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + K+EI + + G I + S + E K A + +FG + + ++ Sbjct: 196 YGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDYKEAFLQGKMLTFGYNDDDFVKVS 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K S++ + +G+S ++ + +G H AQN + L D L Sbjct: 256 EVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAAAAALCLALGCDFKYIKPGLENTS 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + N FTLID++YNA+ ++ + I LS + G ++ V GDM E+ Sbjct: 316 SVKGRLQ----VKNFAGFTLIDDAYNASFNAVLSGIDTLSSFA----GFKVMVFGDMGEL 367 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLF 434 G+ + S H E + LY + + ++L L R SI H+ ++ D L Sbjct: 368 GDEAVSLH----EKVGLYAKNKI-----NLLLCLGPLSRHSVEKAGSIARHF-DSHDALA 417 Query: 435 LFIQSSLV---DGDVVVVKSSNS 454 F++ ++ D V++VK S++ Sbjct: 418 AFLKDEVLKRHDNAVILVKGSHA 440 >gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 328 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 125/235 (53%), Gaps = 18/235 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P Sbjct: 22 SGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLV 77 Query: 88 VDDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D LGA+N+ A R + A+TGS GKTT KEML L + A G Sbjct: 78 VLDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRG 132 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F Sbjct: 133 NLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFG 192 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 G + I AK EI EGL GT LN +D F + + ++ G + + +F + +A Sbjct: 193 GPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRA---GDRNVLTFALTDSA 244 >gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 300 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 18/234 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 23 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEHEVQGA----ALPQLVV 78 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEML L + A G+ Sbjct: 79 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 133 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 134 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 193 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + I AK EI EGL+ GT LN +D F + + ++ G + + +F + +A Sbjct: 194 PDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA---GNRNVLTFALTDSA 244 >gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 521 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 148/533 (27%), Positives = 219/533 (41%), Gaps = 83/533 (15%) Query: 1 MNPLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PL + L Q + IGI V + IDSR ++ F A+KG +DGHDF Sbjct: 1 MIPL-SLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFA 59 Query: 58 LHAVQKGAGLVVVN-------------------------------------------TDM 74 A+ GA ++VN + Sbjct: 60 EEAITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNA 119 Query: 75 VAS------IGSLSIPV--FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 AS + S+ +P+ V D AL +LA R + A ++A+TGS GKT+ KEM Sbjct: 120 TASKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMT 179 Query: 127 TIALSSIKKTYA-------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 L K G+ NN IGVPLTL R+ + DF + ELG +HLGEI + Sbjct: 180 AAILRQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSA 239 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP ++ +A AHL F + +A AK EIF L G +N D + Sbjct: 240 GLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWP------ 293 Query: 240 HALGIKT-----IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 H G+ + ++F DF K S+ + + S+E+ +G H Sbjct: 294 HWQGMLSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVA 353 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + AD++ K L+ H GR + L +G L+D+SYNAN SM Sbjct: 354 NALAAAALAMSVGADLEAIAKGLAQSHATPGR--LFPILLAEGKL-LLDDSYNANVGSMI 410 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AA +L+++ G R+ +GDM E+GE + H + I V G L Sbjct: 411 AAAQLLAEM----PGYRVMAVGDMGELGETAVDCHRQVGSAARQAGIDKVLSVGTLSQQL 466 Query: 415 KDALPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A H H + L +Q+ + +++K S S G ++ L E Sbjct: 467 SSASGNGEHFHDQVVLTARLKQLLQAHPI--ITLLIKGSRSSGMENVVQALQE 517 >gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 500 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 127/471 (26%), Positives = 207/471 (43%), Gaps = 35/471 (7%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----- 76 P V G + D+R + F A+ G DGHDF AV+ GA V+ ++ A Sbjct: 22 PGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQAVEAGAVAVLAAREVDAPAIVV 81 Query: 77 ---SIGSL---SIPVFGVDDVLGALNKLAVAARLR--------SKATIIAITGSVGKTTT 122 + G S+ + G D GA A+A R + T++ +TGS GKT+T Sbjct: 82 PPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVVQRLAEGELTVVGVTGSSGKTST 141 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L + T A GS+NN +G P T R + + EL G I L + Sbjct: 142 KDVIAQLLEPLGPTIAPPGSFNNELGHPWTALRAGAETRHLVLELSARGPGHIAHLAAIA 201 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I V+ + AH+ F E IA K E+ E L + G LN DD + +++ A Sbjct: 202 PPKIGVVLNVGSAHVGEFGSREGIAKTKGELVEALPEDGVAVLNLDDPLVAAMASRTKA- 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299 + ++ G+S +A + E S+ + G++ +++ H G H N L Sbjct: 261 --RVVF-VGESPSAQVRAENITLDDEARASFRLITPAGEAGVKLPLH--GEHHVGNALSA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L A + LS + R R T++++S+NANP SM+A + Sbjct: 316 AAVALELGATPEEIATRLSALERRSAR--RMEVVTRPDGVTILNDSFNANPESMRAGLKA 373 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ ++ R AVLG M E+G S + H ++ ++ NI+ + + G A+ Sbjct: 374 LAAMTRETGRRSWAVLGVMGELGADSVTAHDEIGRLVVRLNIAKLVVIGPEAAAMHQGAH 433 Query: 420 RSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T+ + + L GDVV+VK+S + G +R+ LLE Sbjct: 434 QEGSWGEESTLVPDVEAAAALLHDQLRPGDVVLVKASKAAGLWRVAEALLE 484 >gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] Length = 975 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 130/449 (28%), Positives = 208/449 (46%), Gaps = 34/449 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR + P F A++G +D HDF+ A GA ++ + + +P Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQ----GVAACGLPGI 575 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSY 143 D L A LA R + +IA+TGS GKTT +ML L++ + + A G++ Sbjct: 576 EAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDRRLATQGNF 635 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+PLTL R+ + ELGM+H GEI +L L P +A++ H + Sbjct: 636 NNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAEPTVALVNNAQREHQEFMHSV 695 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A + L +TG DD+ + A++ + + F + A+ + Sbjct: 696 EAVAHENGSVLAALPQTGVAVFPADDAQTAIWVAQAAG---RRVLRFALREGAEAGVE-- 750 Query: 264 KQCS-----EQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + S Q + +QL + EV +G H A+N L A +D + Sbjct: 751 AEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNARNALAATAAALAAGAPLDAICRG 810 Query: 317 LSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L F P GR +R RCA ++ LID+SYNANP S++AAI VL+++ GR + + Sbjct: 811 LEAFAPVAGRLVPRRLRCADDRTLL-LIDDSYNANPDSVRAAIDVLAELP----GRSLLL 865 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMD 431 LGDM E+G+ +FH ++ + ++ +W G A + H + MD Sbjct: 866 LGDMGEVGDNGPAFHAEVGTYAAQRGVAALWACGAMTAQAVAAAQAAGLAAAKHQPDLMD 925 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 F ++L + D V+VK S F R+ Sbjct: 926 --FTLDAAALREFDTVLVKGSR---FMRM 949 >gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] Length = 485 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 134/480 (27%), Positives = 205/480 (42%), Gaps = 63/480 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + I +R + P F A+ G DGHDF A GA V+V A + P VD Sbjct: 28 VVIGTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQL-----PHLVVD 82 Query: 90 DVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA VA IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLT R + F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGVPLTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAMVLNVGSAHLGEFGSREII 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI E L G LN D+ + ++ I + D + W + Sbjct: 203 AQAKGEIVEALSVDGWAVLNAADTLVAGMAPRTRGH-IAWFSPDADHRRPDADIEVWAES 261 Query: 267 SEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLG---------------IVSILTADV 310 + L S + G + LMT+G + D+ Sbjct: 262 THAD----DLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAATAAALAALAMNDDI 317 Query: 311 DTA-----IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 D +ALS + R + L+++ YNANP SM A+++ + + Sbjct: 318 DDESVTRIAEALSNAVSRS--AMRMQLRERADGLVLVEDCYNANPDSMAASLTAMGHVLA 375 Query: 364 ---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 + + R +AVLGDM E+G+ S + + S +H +GF V +A+ D Sbjct: 376 TRRARDPQTRGVAVLGDMLELGQDSARLNAE-----SGRRAAH---AGFDVIIAVGD--- 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDG---------DVVVVKSSNSCGFYRLINLLLEEFPA 470 + ++ +G + + S++ D DVV++K+S R+ + EE A Sbjct: 425 EAKNIAEGARAEGARVIV-STVEDASGSLGWTSHDVVLLKASRGLALERVGRDVFEEREA 483 >gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp. novicida GA99-3549] gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549] Length = 453 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 188/382 (49%), Gaps = 17/382 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++I+S + Q+ F + DGH+FI A+ A + +V+ L IP Sbjct: 23 IQTVAINSNEVR-QDCLFVAIVANRDGHEFIPSAIANRAKAI-----LVSKKQGLDIPQV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L LA R II++TGS GKT+ KEM+ L +K + G+ NN+ Sbjct: 77 VCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGE-RKVHFTQGNLNNY 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+T+ P DVDF + E G + GEI+ +++P+IA+IT + HL N ++ + Sbjct: 136 LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNIAMITNVGACHLENLKTLDGV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L + G +N DD E + + L K I + AD + ++ Sbjct: 196 MIEKGELLKALPRDGFCIVNLDD---ERIPNYAKLLECKKISCSMTNPKADILVLDYRVT 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S +++++ + + IG H N + L I S++ ++ + + K + Sbjct: 253 SNSYAVKIRIFDQEYDYQLPNIGKHNLFNSV--LAIASVVAVGLEPKDFLQNTQNIKNYK 310 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R+ TLID++YNA+ +++AAI L++ +G++I + M E+G+ ++ Sbjct: 311 G-RFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEF----DGKKILAISSMRELGDEAE 365 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 ++H + + L N+ V+L G Sbjct: 366 NYHRKMGQWLKKANLDKVFLFG 387 >gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium vanbaalenii PYR-1] gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 526 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 130/474 (27%), Positives = 210/474 (44%), Gaps = 46/474 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ---------KGAGLVVVNTDMV----A 76 + DSR++ P F A+ G DGHDF AV + G+ V D V A Sbjct: 34 VEFDSRAVTPGGLFLALPGARSDGHDFAATAVAAGAVGVLAARPVGVPAVVVDPVRPDPA 93 Query: 77 SIGSLSIPVFGVDD-------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + G+ + VD L L A + TII ITGS GKT+TK+++ Sbjct: 94 APGTAGVLEHDVDGSGAAVLAALARLASAVAAELVAGGLTIIGITGSSGKTSTKDLIAAV 153 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L+ + + A GS+NN +G P T+ R D+ + E+ H G I L + P IAV+ Sbjct: 154 LAPLGEVVAPPGSFNNELGHPWTVLRATRSTDYLVLEMSARHPGNIAALARIAVPSIAVV 213 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AHL F E IA+ K+E+ + + ++G + LN DD + K+ A + Sbjct: 214 LNVGTAHLGEFGSREVIAATKSELPQSVPESGVVILNADDPAVAAMADKTAA----RVVR 269 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGYHMAQNMLMTLGIVS 304 G+ A + L + +V VH G H N L + Sbjct: 270 VGRGAEALDVCADGVSLDALARPSFTLHTGAADVPVTLAVH---GDHQVSNALCAAAVAL 326 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + AL+ P R + + T+I+++YNANP SM+A + L+ +S Sbjct: 327 ECGATPEQVAAALATAGPVS--RHRMQVTAREDGVTVINDAYNANPDSMRAGLKALAWMS 384 Query: 365 PHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLAL 414 G +GR AVLG+M E+G+ + + H + + ++S + + G H + Sbjct: 385 RGGASKGRSWAVLGEMAELGDDAITEHDRIGRLAVRLDVSRLIVVGSGRPMSAMLHGAVM 444 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + S + ++T D +++ L GDVV+VK+SNS G L + L+ + Sbjct: 445 EGSF-GSEAIPVADT-DAALEILRAELRPGDVVLVKASNSAGLGALADALVSDV 496 >gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia J2315] gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia J2315] Length = 468 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/472 (25%), Positives = 202/472 (42%), Gaps = 40/472 (8%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF+ + Sbjct: 7 GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + +++P+ + AL LA R+R ++A+TGS GKTT KEM+ Sbjct: 63 GAAAALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN +G+PLTL R+ + E+GM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + D Q+ E + + ++ V +G H A+N L Sbjct: 243 LDFALHDAERQNDAQIVGRMHGDE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 + + L F P +GR + ++ T++D++YNANP SM+AAI VL + Sbjct: 300 GAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +P R+ V+GDM E+G+ +FH ++ I ++ AL DA R Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALF-------ALGDA-SRDA 406 Query: 423 HVHYSET---MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467 Y +T D + + + L G V+VK S R+++ L + Sbjct: 407 CTAYGDTARHFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458 >gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] Length = 466 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 189/402 (47%), Gaps = 35/402 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T H+ QA+ + +P F + + DSR I + F A++G +DGH+F++ A GA Sbjct: 2 TLHEAAQALG--VVATMPGNF-SSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADGA 58 Query: 66 GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V+ + S +P+ V+D AL +LA R R + +I +TGS GKTT KE Sbjct: 59 AAALVDARWAGTQPVPSPLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKE 118 Query: 125 MLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 M T L + + A G+ NN IG+PLTL + I E+GM+ GEI Sbjct: 119 MCTAVLRAQARRDGHGAEAVLATAGNLNNDIGLPLTLLELRSSHRAAIVEMGMNRPGEIA 178 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS---FFE 233 +L L RP +AV+T AHL + IA K I+E L G +N DD+ ++ Sbjct: 179 YLAGLARPTVAVVTNAQRAHLQGMGTVIGIAREKGAIYEALGPDGVAVINADDTQAGYWR 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHHGIGY 290 L A L ++S + AD +C+ + S + + + V G Sbjct: 239 ELNAARRTL----VFSL--TPRADVA----GECTLRGLGSHLVMTTPAGRIAVDLQVPGE 288 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H A+N A + + L+ + GR +R R N ++D+SYNANP Sbjct: 289 HNARNATGAAAACLAAGASPEAVAEGLAAYTGTRGRLQR-RAGPNGAV--VLDDSYNANP 345 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 S++A I VL+ G++I VLGDM E+G S H ++ Sbjct: 346 DSLRAGIDVLAATP----GQKILVLGDMGEIGWTSAQVHDEI 383 >gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] Length = 473 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 176/373 (47%), Gaps = 26/373 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---- 85 + IDSR + F A++G DGH +I KGA L VV+ AS G Sbjct: 33 VVIDSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS 92 Query: 86 -FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD + L ++AVA R + A+ GS GKTTTKE++ L K + G+ N Sbjct: 93 YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELIASVLGVGFKVHMSRGNRN 152 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH+GVPLTL +M D + + E+G++H GE+ L + P ++T I HL ++ Sbjct: 153 NHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGLLTNIGHEHLEFLHDLQ 212 Query: 205 EIASAKAEIFEGLEKTGTI-FLNYDDSFF-----ELLKAKSHAL-GIKTIYSFGKSKNAD 257 +A+A+ ++E L+ G + F+N DD + +L +A + L G +S D Sbjct: 213 GVAAAETRLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNGCGEGVPHAESAALD 272 Query: 258 -FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 F + C Q+ V L S+ G H N L S L + + Sbjct: 273 PFGRPSFMLCLSQACESVTL---SL------TGRHNVVNALAAAAAGSYLGLSLREIKEG 323 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L P G KR G +++++YNANP SM+ AI +L + GR+IAVLG Sbjct: 324 LENMIPATGW-KRLEFQ-EAGGVMIVNDTYNANPDSMRLAIDLLCDLQC--SGRKIAVLG 379 Query: 377 DMCEMGELSQSFH 389 DM E+G ++ H Sbjct: 380 DMLELGSSAELEH 392 >gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] Length = 451 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 198/455 (43%), Gaps = 45/455 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-- 87 + +DSR E F A++G DGH FI + KG L+V S P Sbjct: 20 VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79 Query: 88 -----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + L +L + + + R + T+ AITGSVGKT+ K L K +A G+ Sbjct: 80 LTPERCEYGLASLASVYLKSLERLRETV-AITGSVGKTSAKNDTKALLEGYFKIHAAAGN 138 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YN IG +T+ P D + + E+G +H GEI +T + P IA +T +APAHL NF Sbjct: 139 YNTLIGCAVTVLAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVAPAHLENFGS 198 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 +E + AK EIF E +N D+ +L ++ L + + FG+ F Sbjct: 199 LEGVLQAKTEIFAS-ENLRCAVINGDNG---MLCKRAEELRLPEVIRFGRRGEVLFAREH 254 Query: 262 -KWKQCSEQSWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 W E+ V+ L G S + G H + + I L Sbjct: 255 LSW----EKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIAA 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +L GRG+ L++ ++DE YNA+PA++KA+++ + S GRR +L Sbjct: 311 SLPKCRNSAGRGE---IRLSESGAAILDECYNASPAAVKASLAAMD--SADIPGRRFLIL 365 Query: 376 GDMCEMGELSQSFHIDLAEVL-----SLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 G+M E+G S S H + E LY W +V D +Y +++ Sbjct: 366 GEMLELGTASVSEHGKIFERALRVSDLLYLFGEEWK---NVDGTAD--------YYYDSI 414 Query: 431 DGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLL 464 D L + + +GDV++VK S R++ L Sbjct: 415 DALIEAVDGTRPGEGDVILVKGSRGNHLERVVRAL 449 >gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 471 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 177/385 (45%), Gaps = 48/385 (12%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VF 86 + DSR + E F A+ G DGH +I A+Q GA +V+ + G +P + Sbjct: 27 TADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAAIVLAEEKRLRREGVPVLPEKSSII 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L L +LA A +I +TGS GKTTTK+M+ L + + + G+ N Sbjct: 87 AVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTTKDMVAAVLGTKFRVHKNAGNLNTE 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P+T+ P D + + E+GM LG+I+ L + P AVIT I HL E I Sbjct: 147 IGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEISCPCAAVITNIGATHLELLGSRENI 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-----SFGK--------- 252 A AK EI E L + G LN +D A H KT++ FG+ Sbjct: 207 ARAKWEIVESLPEEGIAILNTEDKISMEKAASYHG---KTLFYGIEGKFGRPDLWAEEII 263 Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 F+ R K E + + L GK H+ + A + G+ + Sbjct: 264 PSGDTGTTFRARYKK---ENVLIRLPLPGK-----HNVLDALAALGAGLLNGV------N 309 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI--DESYNANPASMKAAISVLSQISPHG 367 +++ +AL R + G I ++ YNANPAS+KA+++VL + G Sbjct: 310 LESGSQALEGLQISA-----MRLEILPGCHQSIIINDVYNANPASVKASLAVLKE---RG 361 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL 392 + +AVLG+M E+G SQS H ++ Sbjct: 362 GAKTVAVLGEMYELGAASQSGHREV 386 >gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] Length = 448 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 113/395 (28%), Positives = 191/395 (48%), Gaps = 44/395 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +V + + +DSR + + FFAI +G+++I + KGA LVV + + Sbjct: 37 VVETNEIGHVVMDSRKVQKGDLFFAIN----NGNNYIEDVLNKGAALVVAD-----NYKG 87 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V V++ + ++ KLA R IIAITGS GKTTTK+M+ LS T + Sbjct: 88 NDKRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKTTTKDMMYSVLSQKYVTAKTM 147 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NNHIGVP T+ ++ + + ELGMS GEI L+++ +P I VIT I +HL Sbjct: 148 GNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSNIAKPDIGVITNIGDSHLEFL 207 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E + AK E+ + + K I DD F ++L GIK G N ++Q+ Sbjct: 208 KTRENVFKAKTELIKYITKENLIIFG-DDPFLKILD------GIKV----GYGDNNNYQI 256 Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + +++ EV L GK H+ + MA + +GI ++ Sbjct: 257 KNFMDSDKGLSFELDENKYEVALNGK-----HNCLNAAMAVVIGKKMGIP---YEEIKAG 308 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L + P R++ + + I+++YNA+P S+ ++ ++ + + +I Sbjct: 309 LKNLEL-TP-----MRFQ-KIEKENIVYINDAYNASPISVSFSLETFDKL--YNDTLKIV 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VLGDM E+GE +H ++ + + ++L G Sbjct: 360 VLGDMLELGENEIEYHKNILDKALNIHTDKIYLYG 394 >gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] Length = 356 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 110/374 (29%), Positives = 174/374 (46%), Gaps = 33/374 (8%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + ++ L DS E + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM-ASNSLLLAPADSIVE-----DYLPTD 230 Query: 245 KTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + FG+ D RK + +++E Q + V G + A N ++ Sbjct: 231 KKVVRFGQGAELEITDLVERKDSLTFKANFLE---QALDLPVT----GKYNATNAMIASY 283 Query: 302 IV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A + L + + ++ A N ++ + YNANP +MK + Sbjct: 284 VALQEGVSEEQIHQAFQGLELTRNR----TEWKKAANGA--DILSDVYNANPTAMKLILE 337 Query: 359 VLSQISPHGEGRRI 372 S I + GR++ Sbjct: 338 TFSAIPANEGGRKL 351 >gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] Length = 511 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 143/497 (28%), Positives = 221/497 (44%), Gaps = 86/497 (17%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69 P V G + DSR + P F A+ G DGHDF AV+ GA +VV Sbjct: 23 PAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAEKAVESGAVAVLAARPVGVPAIVV 82 Query: 70 VNTDMVASIGSLSIPVFGVDD------VLGALNKLAVAARLRSKA----TIIAITGSVGK 119 T V G+ + ++ D+ V+ AL+ LA A R A I+ +TGS GK Sbjct: 83 EPTGKVEGDGA-NADIYANDEDGSAAAVIQALSALARAVTQRLAAEDGLNIVGVTGSAGK 141 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ + +T A GS+NN +G+P T R ++ + E+ +G IR LT Sbjct: 142 TSTKDLIATIFRAAGETVAPPGSFNNEVGLPYTALRCDEHTEYLVAEMSARGIGHIRHLT 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLK 236 + P + V+ + AHL F E IA AK E+ E L G LN +DSF + Sbjct: 202 GITAPKVGVVLNVGTAHLGEFGSRENIALAKGELVEALPSAAEGGVAVLNANDSFVAGMA 261 Query: 237 AKSHALGIKTIYSFGKSKNA----------DFQLRKWKQCS------EQSWMEVQLQGKS 280 +++A K +Y +K D QL + S + + V+LQ Sbjct: 262 LRTNA---KVVYYSAVAKQGSTPPAQYYATDVQLDDVARASFLMHTPGHAPLPVKLQ--- 315 Query: 281 MEVVHHGIGYHMAQN------MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G H N + LG+ + L A+ + + ++ H + R +R Sbjct: 316 ------VFGAHQVSNALAAAAAAIELGLSAELVANALSGHR-IASEHRMDVRNRR----- 363 Query: 335 NQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 TLID+SYNANP SM+ A ++ + + R IAVLG+M E+G+ + H L Sbjct: 364 --DGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELGDDALDAHRQLG 421 Query: 394 EVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL------VDG 444 L+ Y++ H+ G + A+ +A + I+ S +D + S L VD Sbjct: 422 AELAKYHVDHLVAVGSSPNTRAMAEAAQAKGINTSVSVDVDEAAKIVDSLLRTPPVGVDD 481 Query: 445 -------DVVVVKSSNS 454 DVV+VK+SN+ Sbjct: 482 WPQRDVKDVVLVKASNA 498 >gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Synechococcus sp. WH 8109] gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Synechococcus sp. WH 8109] Length = 459 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 204/458 (44%), Gaps = 39/458 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V + DSR + + F + G +DGH F+ + VV+ S Sbjct: 22 PDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDKLTEHKVQAAVVSRSWTEPFPS-G 80 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + VDD L A +LA+ R ++A+TGS GKTTT+E++ AL+ + A + Sbjct: 81 LLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPMGAIQASEAN 140 Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 NN +GVPLT L D + E+GM GEI L+ P +AVIT I AH+ Sbjct: 141 NNNDVGVPLTVLGATAADAAL-VIEMGMRGSGEIERLSRCTEPDLAVITNIGTAHIGCLG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA+AK EI GL GT+ + D E L A ++ + +D Sbjct: 200 SREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAAVWSGRVLRVRLADDPVVESDLIN 259 Query: 261 RKWKQCS------------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 W + + +QL+G+ H A+N+L+ + + L Sbjct: 260 ADWIGADLVGDINGDQLLIDADRLPLQLEGR-----------HNARNLLLAVAVADQLGV 308 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 ++ + V P GR +R L QG TL+DE+YNA+P ++ AA+ +L+ Sbjct: 309 S-RKQLQGMQVTVPG-GRNRR----LQQGGLTLLDETYNASPEAVLAALELLAAQP---- 358 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHY 426 GRR AVLG M E+GE S H ++A + + L G A+ + H+ Sbjct: 359 GRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAEVAAPLPHLQL 418 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + + L GDV+++K+S RLI LL Sbjct: 419 VSNPEDAAVPLAAWLNSGDVLLLKASRGVALERLIPLL 456 >gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein [UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ( MurF); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (MurE) ] [Thiomonas sp. 3As] Length = 975 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 129/444 (29%), Positives = 204/444 (45%), Gaps = 24/444 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR + P F A++G +D HDF+ A GA ++ +G+ +P Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQ----GVGACGLPGI 575 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSY 143 D L AL LA R + +IA+TGS GKTT +ML L++ + + A G++ Sbjct: 576 EAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDRRLATQGNF 635 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+PLTL R+ + ELGM+H GEI +L L P +A++ H + Sbjct: 636 NNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLAEPTVALVNNAQREHQEFMHSV 695 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A + L +TG D+ + A++ + +++ Sbjct: 696 EAVAHENGAVLAALPQTGVAVFPAADAQAAIWVAQAAGRRVLRFALREEAEADVEAEVSG 755 Query: 264 KQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 Q + VQL + EV +G H A+N L A +D + L F Sbjct: 756 HAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNARNALAATAAALAAGAPLDAICRGLEAFA 815 Query: 322 PKEGR--GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P GR +R RCA ++ LID+SYNANP S++AAI VL+++ GR + +LGDM Sbjct: 816 PVAGRLVPRRLRCA-DEHTLLLIDDSYNANPDSVRAAIDVLTELP----GRSLLLLGDMG 870 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLF 436 E+G+ +FH ++ + ++ +W G A + H + MD F Sbjct: 871 EVGDNGPAFHAEVGTYAAQRGVAALWACGAMTAQAVAAAHAAGLAAAKHQPDLMD--FTL 928 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRL 460 ++L + D V+VK S F R+ Sbjct: 929 EAAALREFDTVLVKGSR---FMRM 949 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 68/280 (24%), Positives = 104/280 (37%), Gaps = 42/280 (15%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S DSRS+ P E F A G D F+ A+ GA +V + V G + VD Sbjct: 27 SADSRSLQPGEVFVAWPGAARDPRQFVTQALAAGAAAALVEAEGVQHFGFTDPRILAVDG 86 Query: 91 VLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN---- 144 + LA A ++A+TG+ GKT+ AL++ + IG+ Sbjct: 87 LKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGAGWP 146 Query: 145 -----------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + + + LAR+ + E L E R + H A T + Sbjct: 147 DALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAI--HAAAFTNL 204 Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE---LLKAKSHALGIKTI 247 HL + A AK +F GL+ L+ DD + L +S L ++T Sbjct: 205 TQDHLDYHGDMAAYARAKRALFVWPGLQHA---VLDIDDPYAASVLLADCRSRGLQVQTT 261 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHH 286 K+ W C+E VQ G+ + +VHH Sbjct: 262 ALIAKT--------DW--CAEDV---VQTSTGQRLTLVHH 288 >gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 433 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 181/361 (50%), Gaps = 14/361 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P FFA+KG +++G+ F A+Q GA V+++ A G + VD Sbjct: 16 VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDGRYIL----VD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +L KLA R +I +TG+ GKTTTKE+L LS KTYA G+ NNHIGV Sbjct: 72 NVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + + E+G +HL EI FL + P +I+ + AHL F E + Sbjct: 132 PLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNVGKAHLEGFGSFEGVKKT 191 Query: 210 KAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L+ GT+FL D+ + A + T Y F ++ + +L K + Sbjct: 192 KGELYDYLQNHNGTLFLQADNPHLNEMAATRKISEVVT-YGFAETNDVIGKLLKADPLLQ 250 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 W E + + S V G + +N L + + + + + PK R + Sbjct: 251 IEWKE-KDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAEQINTGIERYTPKNNRSQ 309 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N T+I + YNAN +SM AA+ + I R++ +LGDM EMG+ S + Sbjct: 310 VTKTEHN----TIIADYYNANASSMAAALDNIEVIDA---SRKVIILGDMFEMGDESDAE 362 Query: 389 H 389 H Sbjct: 363 H 363 >gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 350 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 146/292 (50%), Gaps = 30/292 (10%) Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 A+TGS GKTT KEML L + A G+ NN +GVPLTL + + + ELG S Sbjct: 1 AMTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASR 60 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI F L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D Sbjct: 61 VGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKA 120 Query: 232 FELLKAKSHALGIKTIYSFG-KSKNADFQL----RKWKQC------SEQSWMEVQLQGKS 280 F + + ++ G + I +F AD + C S +VQL Sbjct: 121 FPVWRKRA---GNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLGVAQVQL---- 173 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + +G H N L L ++ + L+ P +GR + A N Sbjct: 174 -----NLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAV-VQIASNG--TR 225 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +ID++YNANPAS+ AA+++L+ + GR + VLGD+ E+GE ++ H D+ Sbjct: 226 IIDDTYNANPASINAAVNILTGFT----GRTVLVLGDIGELGEWAEQGHRDV 273 >gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis vadensis ATCC BAA-548] gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis vadensis ATCC BAA-548] Length = 459 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 132/464 (28%), Positives = 216/464 (46%), Gaps = 32/464 (6%) Query: 2 NPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 NP +T +L +A +G G +P V + D+R F A+ G +D HD++ A Sbjct: 3 NPTFTGKELAEATRGSWRDGRLPAEAV-AVYTDTRVAGEGRLFLALPGEKFDAHDYLAQA 61 Query: 61 VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 V GAG + + D + +PV VDD L A K+A R R + ++A+TGSVG Sbjct: 62 VAAGAGGLCIRRDRAEKLPEPCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVG 121 Query: 119 KTTTKEMLTIALSSIKKTYACI---GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KT+ KE++ L++ A + G+ NN IGVP L R+ + + E+G +H GEI Sbjct: 122 KTSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQNLLRLNSRHRYAVIEMGTNHHGEI 181 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L+ + P +++ +IAP HL +E +A K+ IF GL ++G + D E+L Sbjct: 182 EPLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFCGLPESGAAVIPADGPAVEVL 241 Query: 236 KAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMA 293 + + + ++ FG+ D R E S E+ + G+ + G H A Sbjct: 242 ETAAESY---RVFRFGEDVSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQA 298 Query: 294 QNMLMTLGIVSILTADVDT-AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N + + +T A A+ P G R + G T ++++YNANP S Sbjct: 299 RNAAAAAALAVAIGIPPETIAAGAVHARLP----GMRSKVTRLDG-VTYVNDAYNANPGS 353 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+AA++ L++ + R + VLG+M E+G + H L E N + G +L Sbjct: 354 MRAALANLAEFA--DPARLVLVLGEMRELGGSEAAEHRALVE-----NALQTF-PGVRLL 405 Query: 413 ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + A P ++ SE + + + DGD+V K S Sbjct: 406 TVGRAFGECPGALRFDRSEEVGETLAKL---VRDGDLVFAKGSR 446 >gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] Length = 429 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 196/404 (48%), Gaps = 31/404 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 + + +DSR + FFAIKG G++ + A++ GA LV+ + D++ + + Sbjct: 22 IKDVCMDSREVKKGSLFFAIKG----GNNHVEEAIKNGAVLVIYDRKDLLIQDEN---TI 74 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 F +D + + KLA R ++ ++AITGS GKTTTK+++ LS +T G++NN Sbjct: 75 F-TEDTVNFMQKLARDYRKSNQTKVVAITGSNGKTTTKDIIYSVLSQRFRTKKTQGNHNN 133 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P T+ + + + E+GMS GEI L + P +IT I +HL E Sbjct: 134 HIGLPYTILNAQPEDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKNKEN 193 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK E+ E + TI DD + + + GIK G F++ ++ Sbjct: 194 VFKAKGELLEYVHSKNTIVFG-DDYYLKDIH------GIKV----GYGDENTFKISEF-- 240 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKE 324 E +L GK+ + +G + + + LG+ + + ++++ ++ + + Sbjct: 241 IENDKGAEFKLAGKTYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVEL----- 295 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R++ + +G I+++YNANP SMK AI ++ + +I VLGDM E+GE Sbjct: 296 -TPMRFQ-KIEKGKKLYINDAYNANPTSMKLAIETFDKLY-NKRACKIIVLGDMLELGEK 352 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 S+ +H ++ L +++L G + L V+Y E Sbjct: 353 SEEYHKNIKYYLKKSKAEYIFLYGKEMKNLWSVCQDDKRVYYFE 396 >gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX9] gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 137/459 (29%), Positives = 209/459 (45%), Gaps = 52/459 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--------IGS 80 G SIDSR+I E FFA+ G DGHD++ A+ GA VV+ +AS Sbjct: 26 GYSIDSRTIGAGELFFAVTGDRVDGHDYVEAALANGAVAAVVSNRWLASDEPREVDPCKL 85 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L +P G + VL A+ LA+ R +I +TGS GKTTTKEM+ LSS Sbjct: 86 LWVP-EGEECVLRAMQLLALRVRQSWGGRVIGVTGSAGKTTTKEMVATVLSSQFSVLKSA 144 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NNH GVPL L R+ + + + E+GM+H GEI+ L + P V++ +A HL F Sbjct: 145 GNLNNHFGVPLQLLRLEAEHEVAVIEMGMNHSGEIKRLAEIAEPQWGVVSNVAAVHLEFF 204 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADF 258 +GI IA+AK E+ E L G LN DD + + +G+ ++ Y G Sbjct: 205 PAGIAGIAAAKRELIEALPSDGLAILNGDDEWV-----RGFGVGVDSVLYGLGDE----- 254 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTA 308 Q + +E L G S VH G +G H N L + + Sbjct: 255 -----AQVRATNVVEAGLDGVSF-TVHAGGDTAEVHLALLGKHNVSNALAAIAVGWKSGM 308 Query: 309 DVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + AL+ + RG +R A L+++SYN+NP ++ A + L Sbjct: 309 TLTACAAALAEMRATDKRGAVIEWRGA------KLLNDSYNSNPKALDAMVDALISTPAT 362 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVH 425 RRI V G+M E+G + H ++ + V + G + A +++ V Sbjct: 363 ---RRIVVAGEMLELGPEGPALHKACGRRMAEQGVDLIVGVRGLAADLVSGAGEKAVFV- 418 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ET + ++ +++ GDVV++K+S R + L Sbjct: 419 --ETPEAAGNWLTANVKAGDVVLLKASRGVRLERALEKL 455 >gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 173/371 (46%), Gaps = 19/371 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 V G ++DSR + P FFA+ G DGH F+ A+ GA V+ + + + P Sbjct: 25 VEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLAEVLPDGAPPGT 84 Query: 85 -VFGVDDVLGALNKLAV-AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D AL LA R R+ ++ ITGS+GKTTTKEM L+ G+ Sbjct: 85 AVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLARRFAVLKSAGN 144 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YN +G+PLTL + + E+ M LGEI L + P + V+T +A +HL Sbjct: 145 YNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEPDVGVVTVVAESHLEFLGS 204 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLR 261 +E +A AK E+ E L + G LN D + A++ A + +FG + AD + Sbjct: 205 LERVAQAKGELVEALPEDGVAILNAGDPRVRAMAARTRARVL----TFGHDGEGADVRAV 260 Query: 262 KWK-QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + + S +++ G V + G L + L D T L+ Sbjct: 261 NVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGVALGLDAATIAAGLA- 319 Query: 320 FHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 E R R + Q G +TL + YNA+P S +AA+ L Q++ G R +A+LGDM Sbjct: 320 ----EARPAALRNEIRQAGPWTLYIDCYNASPTSTRAALHALRQVA--GSRRAVAILGDM 373 Query: 379 CEMGELSQSFH 389 E+G+ + H Sbjct: 374 FELGDWAVEGH 384 >gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum DSM 43827] gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum DSM 43827] Length = 490 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 138/477 (28%), Positives = 204/477 (42%), Gaps = 58/477 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R + P F A+ G DGHDF AV GA V+ ++ A ++ PV Sbjct: 29 GVEFDTRKLLPGGLFLALPGERVDGHDFAAAAVAAGAAGVLAGREVPAP-SVIAPPVAPA 87 Query: 89 DD-----------------VLGALNKLA--VAARLRSKA-TIIAITGSVGKTTTKEMLTI 128 D+ VL AL KLA V RL + T++ +TGS GKT+TK+++ Sbjct: 88 DEHEGAYVLSGDSDGSGAAVLAALGKLARHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQ 147 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS T A GS+NN +G P T R D + + EL G I L + P I Sbjct: 148 VLSPTGATIAPPGSFNNELGHPWTALRADEDTGYLVLELSARGPGHIADLCAVAPPRIGA 207 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGI 244 + + AHL F E +A K E+ E L + G LN DD E KAK +G Sbjct: 208 VLNVGTAHLGEFGSREGVARTKGELVEALPEDGVAVLNADDPLVLAMAERTKAKVVLVG- 266 Query: 245 KTIYSFGKSKNADFQLRKWKQ-----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +S + + D L + + + VQL VH G H N L Sbjct: 267 --EHSRAQVRAVDIVLDEQARPGFTLLTPHGSARVQL------AVH---GPHQVGNALTA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L A L P R T+++++YNANP S+KAA+ Sbjct: 316 AAVALELGATPQQVADRLGSAKPISAH--RMEVVDRADGVTVVNDAYNANPESVKAALKS 373 Query: 360 LSQISPHGEG--RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ IS R AVLG M E+G S H ++ + +++ + + G A+ Sbjct: 374 LATISRSTTPARRSWAVLGPMAELGADSVRAHDEIGRLAVRLDVNRLVVIGDDARAMH-- 431 Query: 418 LPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + H+ S + + + ++ + GDVV+VK+SNS G +R+ LLE Sbjct: 432 --QGAHLEGSWGEESILVPDVAAAIELLRDEVRPGDVVLVKASNSYGLWRVAEALLE 486 >gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris C735] gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris C735] Length = 438 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 207/444 (46%), Gaps = 30/444 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ +SR+ F A+KG +DG+ F A+ KG +++ A + + + VD Sbjct: 16 ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRLIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L KLA R R +I ITG+ GKTTTKE+++ L+ G++NN +GV Sbjct: 74 DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L P +IT + AHL F E + Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ +FLN ++ + + + I ++G+S +A+ + + C+ Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMACQRE---MNRIITYGQSDDANVR-GEVIDCAP 249 Query: 268 --EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 SW ++ + + ++ EV H IG + NML + I + AL + P Sbjct: 250 FLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPEQINHALESYVP 309 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + A N+ LI ++YNANP+SM AAI ++ ++A+LGDM E+G Sbjct: 310 ANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELG 362 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSS 440 E+S+ H L + L VWL G H ++ + +D + I + Sbjct: 363 EVSELEHQKLVDKLQADGFQEVWLVGEEF--------GKTHTNFRKFRNVDEVKAEIAAH 414 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 + +++K SN Y L LL Sbjct: 415 CPENCYILIKGSNGIKLYELPELL 438 >gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] Length = 464 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 123/416 (29%), Positives = 199/416 (47%), Gaps = 45/416 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N ISI+S+ + + F AI+G G++F+ A++KGA V ++ + + F Sbjct: 21 INNISINSKELGKNDIFVAIRG----GNNFVNEALEKGA-FAVYDSKTLKIDEKYANRAF 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D + L A R +I ITGS GKTT K+M+ LS K G+YNNH Sbjct: 76 FVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNYNNH 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P TL R D F I E+GMS GEI L + P I VIT I +HL E + Sbjct: 136 IGLPFTLLRAEEDDKFIILEMGMSGFGEIDLLGQIALPDINVITNIGESHLEFLKTKENV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGI--------KTIYSFG--- 251 AK EI ++ T+ +N DD + + +KA++ AL + + + +G Sbjct: 196 FLAKTEIIPYIK--NTLVINGDDDYLKNVKAENIEVVKALNLGSNEFREKTSDFYYGDVH 253 Query: 252 -KSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 DF L+ + K C QS +E + + G H N++M + + + Sbjct: 254 FNESGTDFFLKYFGKIC--QSTVERNYKTNVL-------GEHNVLNLVMAIAVAKQFGME 304 Query: 310 ---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A+K + + G R++ N G T I+++YNA+P SM+ ++ SQI + Sbjct: 305 DKIISEAVKNIGL------TGMRFQIIEN-GDTTYINDAYNASPMSMEKSLETFSQI--Y 355 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +I VLGDM E+GE H +L + ++L G + +L + + ++ Sbjct: 356 NDRLKIMVLGDMLELGENELELHSNLFNTIKNTKFDKLYLFGERMKSLFEKIKENV 411 >gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] Length = 550 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 122/457 (26%), Positives = 194/457 (42%), Gaps = 59/457 (12%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+W+ +L A G G + +S DSR+I + F A++G +DGH F+ V Sbjct: 31 NPVWSLDQVLLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVV 90 Query: 62 QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGK 119 +KGA GLV+ + + + D L AL LA R++ K ++AITGS GK Sbjct: 91 RKGAAGLVLESPPEEPLPVPVVLVA----DTLQALGDLAHYRRMQMKGLKVLAITGSSGK 146 Query: 120 TTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TT KEM + + + G+ NN IG+PL+L + + + E+GM+ GEI Sbjct: 147 TTVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGMNRFGEIA 206 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + +P IA IT + AHL+ + + +A AK E+F G+ T+ +N DD L Sbjct: 207 RMAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDDPRVWRLA 266 Query: 237 AK-----------------------------SHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K S L I + +G + ++ + Sbjct: 267 GKLPQRRITFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQVVASG 326 Query: 268 EQSWMEVQLQGKSME---------------VVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 V+ G+S + VH +G H QN L + Sbjct: 327 PAPRTSVRKPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAAGVSPA 386 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L + P KR R LID+SYNANP+SM AA+ + + + + Sbjct: 387 EIVAGLEGYRPF---AKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRN--RKV 441 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +A+LGDM E+G + H + E ++ ++ G Sbjct: 442 VAILGDMLELGSHGPAAHRFIGEQVARLGFDYLLTVG 478 >gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl- D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl- D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 430 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 213/428 (49%), Gaps = 26/428 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ +SR FFA++G +DG+D+I+ A+ GA V + + + + + V Sbjct: 16 ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRNDLPE----NERIIKVG 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L LA R A IIAITG+ GKTTTKE++ LSS KT + NN+IGV Sbjct: 72 NVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNNYIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + F + E+G SH+ EIR L + P +IT + AHL F ++ + A Sbjct: 132 PLTLLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNVGKAHLEGFGSLDGVVKA 191 Query: 210 KAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ + +K G +F N D+ +LK ++ + IY +G + A F + Sbjct: 192 KTELYDFIRDKGGVVFANLDNL---ILKEWYNSFSV--IY-YGTTSKA-FVYGRMIGFDP 244 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +E ++V H +G + +N+L ++ + + + ++ + P R + Sbjct: 245 TLVLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRINVVIANYIPINNRSQ 304 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELSQ 386 + N LI ++YNANP SM+ A+ + ISP ++ +LG+M E+G S+ Sbjct: 305 NCKTKKN----NLIVDAYNANPDSMRVALDNFYKLRISP-----KMVILGEMGELGSYSK 355 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + L + V+L G + LP S + +T D L +++ + V+G Sbjct: 356 EEHQKVLNSLWGSKVDKVFLIGRNFEEC--LLPCSGWKLFRQTEDCL-EYLRMTSVEGYH 412 Query: 447 VVVKSSNS 454 +++K S + Sbjct: 413 ILIKGSRN 420 >gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR51-B] gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR51-B] Length = 456 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 125/445 (28%), Positives = 205/445 (46%), Gaps = 19/445 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G++IDSR+++ + F A++G DGHD++ A GA VV + ++ IP Sbjct: 27 VSGVAIDSRTVSAGDLFVALRGERVDGHDYVAAAHAGGAVAAVVEEPV-----AVEIPQL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + L+ +A R + + ++ ITGS GKT+ K +L L+ T A G+ NN Sbjct: 82 QVAASVDVLSLIAGMVREQYRGVLVGITGSAGKTSAKTLLASVLAEAGPTLATSGNQNNE 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ ++F + E+G G+I L + RP I + APAHL+N+ ++ I Sbjct: 142 IGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCAVARPGITALLNAAPAHLANYDSVDAI 201 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQ 265 A K EI L N D + ++ + + ++T FG SK D + + + Sbjct: 202 ARTKGEILAALGSGDLGVFNGDQRYADVWREMAAPAEVRT---FGMSKGVDVRAINIQYE 258 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + V+ +V G N L + I L + L P+ G Sbjct: 259 GYKGTHFRVKTPEDGFDVALKLPGSPGVYNALAAIAIAGALGLSPAAIARGLEKVSPERG 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 RG+ R + ++D+SYNANP ++ AAI L+ ++P GRR +LG M E+G + Sbjct: 319 RGRALRASSGA---QIVDDSYNANPVAVAAAIDTLA-MTP---GRRSLILGPMLELGPKT 371 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 FH ++ + + G + S H+++ + L GD Sbjct: 372 DEFHREMGVRAKEAGLDRLITVGEATRPAAEGFGGSPQ-HFAD--NSALLSALPDFTSGD 428 Query: 446 VVVVKSSNSCGFYRLINLLLEEFPA 470 V+VK S +++ LL E A Sbjct: 429 TVLVKGSRGARLEVVVDALLGELEA 453 >gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 122/379 (32%), Positives = 183/379 (48%), Gaps = 50/379 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVD 89 DSR I P + F A KG + DGH FI A + GA + +T D+ + +P Sbjct: 35 DSRLITPGDLFIARKGTNSDGHHFIPAAARAGALAALCSTPANDVPPDFLQIIVP----- 89 Query: 90 DVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL AL+ A A R K T+ I ITGS GKT+TK+ + LS T SYN+ +G Sbjct: 90 DVLTALHATARARTQRQKDTVRIGITGSNGKTSTKDAVAAVLSHKAPTLKTYASYNHELG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIA 207 P+TL + + + E+G +GE+ +L + + PH ++ITT+ AHL F E +A Sbjct: 150 YPITLLHLEPQHRYAVLEMGAQCVGELTWLCNSIASPHWSIITTVGAAHLEYFGTQERVA 209 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----------- 256 AK+E+ + L G LNYDD + AK+ A I +G + A Sbjct: 210 IAKSELVQVLTPDGFAILNYDDELVRAMAAKTQA----RILYYGTGEGATVRASNIGGDT 265 Query: 257 ----DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 F L Q Q ++++L G+ HG+ +A +S+ D+ + Sbjct: 266 LFGHSFTLHYHDQ---QQPVQLRLPGE------HGVTIALAAAATGCAAEMSL--DDIAS 314 Query: 313 AIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ LS P G RC + G TLID+SYNAN S+ A S + S G+ Sbjct: 315 ALEDLS---PAPG-----RCEIKPGPNNSTLIDDSYNANRQSIIAITSAMHNTSQAPNGK 366 Query: 371 RIAVLGDMCEMGELSQSFH 389 R A+LGD+ ++G +++ H Sbjct: 367 RWAILGDIFQLGTYARAEH 385 >gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1] gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1] Length = 844 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 121/452 (26%), Positives = 201/452 (44%), Gaps = 34/452 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--------NTDMVASIG 79 +G S DSR A E F A++ P DGH +I A+ GA V+ NT M+ + Sbjct: 24 SGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAAGATGVICEKPPADLSNTTMIVT-- 81 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 DD + A A + +I +TGSVGKT+ + LS + T+ Sbjct: 82 ---------DDPALLAARWAAARLRQVAPRVIGVTGSVGKTSATRAIAAVLSGLAPTFRS 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 S+N+ IG+P++LAR+ D F + E G ++ GE+ LT L PH+AV+T+ AP LS Sbjct: 133 RRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELHRLTALFPPHVAVVTSAAPMRLSA 192 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F + ++ + L G +N DD L + A + +FG + D + Sbjct: 193 FGSVADLVREYGALVAALPVDGWAVVNGDDPALAGLCDTTRA----RVLTFGTGASCDLR 248 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + M V +G+S++ V IG L +G+ + ++ A + L++ Sbjct: 249 GEAPQYALNGTRMRVCYRGESVDTVIPLIGEPAVGAALAAVGVALVCGMTLERAAERLAL 308 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P G R R L + +ID++ A P++M AA+ L+ + RRIAVLGD+ Sbjct: 309 VEPPAG---RLRPHLARSSAIVIDDTVGAEPSAMLAALRTLAILPAQ---RRIAVLGDLP 362 Query: 380 EMGELSQSFHIDLAEVLSLYNISH---VWL--SGFHVLALKDALPRSIHVHYSETMDGLF 434 + + A + L + +W +G HV+ + + T+ G Sbjct: 363 ADSSIPGEQNDTYAAIGRLAARTADLLIWKGDAGTHVMRAVQRVRTGMSATLVHTIAGAL 422 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L GD+V+V + RL+ L++ Sbjct: 423 EALPPDLGAGDLVLVCGGATARLERLVAALID 454 >gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] Length = 468 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 117/366 (31%), Positives = 169/366 (46%), Gaps = 27/366 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I D+R++ + A++G +D H F AV +GA V+V+ + L +P Sbjct: 24 VCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH----VLPELDVPQV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYACIG 141 V D AL +A A + + ++A+TGS GKT+ K ML A S YA G Sbjct: 80 VVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTVVYASSG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IG+PL + P + DF ++E+G G+I +LT +V P +A++ IAPAHL Sbjct: 140 NRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDIVTPDVALVNNIAPAHLERMG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADF 258 + +A K EI+ L GT +N DD+F FE + + FG AD Sbjct: 200 SLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPASC----AVLRFGLQATADV 255 Query: 259 QLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 Q SE S ++ V QG+ + V G H N L + + + Sbjct: 256 TAYSL-QFSEDSVRFVLVTPQGE-VPVCLALSGRHNVCNALAAAAMALVAGIPLSQIAAG 313 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L + GR + G LID+SYNANP S+ AI L+ S G VLG Sbjct: 314 LGLARSVAGRQVAHAL---PGGAVLIDDSYNANPGSLDVAIDTLTTAS----GPGWLVLG 366 Query: 377 DMCEMG 382 DM E+G Sbjct: 367 DMLELG 372 >gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Odoribacter splanchnicus DSM 20712] gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Odoribacter splanchnicus DSM 20712] Length = 428 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 134/466 (28%), Positives = 223/466 (47%), Gaps = 43/466 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L AI+GH I + DSR I + F A+KG ++DG+ + A+++ Sbjct: 1 MTTIEKLYPAIRGHRI-----------TTDSRQIIRGDIFIALKGENFDGNRYAAAALEQ 49 Query: 64 GAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L ++ N D ++ L V D L L +LA R + I+ ITG+ GKTTT Sbjct: 50 GAALAIIDNADYLSPGCEL------VADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTT 103 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE+ LS KT+A G++NNHIGVPLTL M +FGI E+G +H GEI+ L + Sbjct: 104 KELCHAVLSKKFKTFATQGNFNNHIGVPLTLLSMDETTEFGIVEMGANHPGEIKTLCEIA 163 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241 P +IT I AHL F E I + K +++ L K G +F+N D L ++ H Sbjct: 164 DPDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQL-SRDHK 222 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 Y++G+ D + KQ ++ + + V H +G + N + Sbjct: 223 R-----YTYGQE--GDLLKGEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASA 275 Query: 302 I---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I I D+ TAI+ + P R + R N T+I ++YNANP+SM+A++ Sbjct: 276 IGMHFGIDPLDIQTAIEN---YRPSNLRSQLIRSGRN----TIILDAYNANPSSMRASVG 328 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ GE ++ +LG+M E+G + + H ++ + N ++L G + D Sbjct: 329 NFCEMP--GE-HKVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNNFEHCAD-- 383 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + + + +++S ++ + +K S R++ L Sbjct: 384 -KCNFITWFKDTESFMEYLKSHPLNDSFIFIKGSRGNKLERIVEYL 428 >gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 423 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 115/437 (26%), Positives = 208/437 (47%), Gaps = 31/437 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++IDSR IA + FFA G +++ A+ GA V+V + + +F V Sbjct: 16 VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE---LPEFENRDKNIFYVP 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L L +LA+ R + I +TGS GKTTTKE++ LS G+ NNHIGV Sbjct: 73 STLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ + + + + E+G +H EI FL + +P IT AHL F G E + Sbjct: 133 PLTILSIKPEHEMAVIEMGANHQKEIEFLCTISQPDFGYITNFGKAHLEGFGGFEGVIKG 192 Query: 210 KAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCS 267 K+E+++ L+ TI +N +D +L K +++ I +FGK + N +F+ S Sbjct: 193 KSELYDYLKNNNRTIVVNENDP-IQLEKTENYPSKI----TFGKETSNYNFE-----SFS 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E+ ++ + QG ++ V G + N+ + + AL ++ P R Sbjct: 243 EEHFVGLIYQG--VKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKIKHALELYTPTNMRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + + TL+ ++YNANP+SM A+++ EG + ++GDM E+G+ S+ Sbjct: 301 Q----VVKKEGRTLVLDTYNANPSSMTASLNNFISF----EGSKTIIIGDMLELGDESEK 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H ++ ++ + + G H A+ S + + T + L +++ + + + Sbjct: 353 EHQNILKLAQDLHFDEIITVGKHFKAV-----NSSDLAFENTTE-LAEYLKQHKIQTENI 406 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S ++I+ + Sbjct: 407 LLKGSRGIALEKIIDFI 423 >gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia PC184] gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia PC184] Length = 468 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 120/472 (25%), Positives = 203/472 (43%), Gaps = 40/472 (8%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF+ + Sbjct: 7 GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + +++P+ + AL LA R+R ++A+TGS GKTT KEM+ Sbjct: 63 GAAAALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN +G+PLTL R+ + E+GM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + D Q+ E + + ++ V +G H A+N L Sbjct: 243 LDFALHDAERQNDAQIVGRMHGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 + + L F P +GR + + ++ T++D++YNANP SM+AAI VL + Sbjct: 300 GAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +P R+ V+GDM E+G+ +FH ++ I ++ AL DA R Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREIGAYARERGIDALF-------ALGDA-SRDA 406 Query: 423 HVHYSET---MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467 Y +T D + + + L G V+VK S R+++ L + Sbjct: 407 CTAYGDTARHFDDVGALVSALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458 >gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 448 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 44/395 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +V + + + +DSR + + FFAI +G+ +I ++KGA LV+ + + Sbjct: 37 VVEKNEIGHVVMDSRKVQKGDLFFAIN----NGNSYIDDVLEKGAALVIAD-----NYKG 87 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V V+D + + +LA R +IAITGS GKTTTK+M+ LS T + Sbjct: 88 NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAKTM 147 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NNHIGVP T+ ++ + + ELGMS GEI L+ +V P I VIT I +HL Sbjct: 148 GNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFL 207 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E + AK E+ + + I DD F + L GIK G N ++Q+ Sbjct: 208 KTRENVFKAKTELVKYVSAENLIVFG-DDPFLKDLN------GIKV----GYENNNNYQI 256 Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + E+ V L GK H+ I MA + +G+ ++ Sbjct: 257 KNFTDSDEGLSFEMEEKKYTVSLNGK-----HNCINTAMAIVIGKKMGVS---YEEISNG 308 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L + P R++ + + I+++YNA+P S+ ++ ++ + + +I Sbjct: 309 LKNLEL-TP-----MRFQ-KIEKENIIYINDAYNASPISVSFSLETFDKL--YNDALKIT 359 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VLGDM E+GE +H ++ E + + ++L G Sbjct: 360 VLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYG 394 >gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 428 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 44/395 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +V + + + +DSR + + FFAI +G+ +I ++KGA LV+ + + Sbjct: 17 VVEKNEIGHVVMDSRKVQKGDLFFAIN----NGNSYIDDVLEKGAALVIAD-----NYKG 67 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V V+D + + +LA R +IAITGS GKTTTK+M+ LS T + Sbjct: 68 NDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAKTM 127 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NNHIGVP T+ ++ + + ELGMS GEI L+ +V P I VIT I +HL Sbjct: 128 GNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPDIGVITNIGDSHLEFL 187 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E + AK E+ + + I DD F + L GIK G N ++Q+ Sbjct: 188 KTRENVFKAKTELVKYVSAENLIVFG-DDPFLKDLN------GIKV----GYENNNNYQI 236 Query: 261 RKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + E+ V L GK H+ I MA + +G+ ++ Sbjct: 237 KNFTDSDEGLSFEMEEKKYTVSLNGK-----HNCINTAMAIVIGKKMGVS---YEEISNG 288 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L + P R++ + + I+++YNA+P S+ ++ ++ + + +I Sbjct: 289 LKNLEL-TP-----MRFQ-KIEKENIIYINDAYNASPISVSFSLETFDKL--YNDALKIT 339 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VLGDM E+GE +H ++ E + + ++L G Sbjct: 340 VLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYG 374 >gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM 10411] gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM 10411] Length = 429 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 39/461 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +++ ++ SI + + G SIDSR+I E F IKG +DG DF AV+K Sbjct: 3 FGLDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKS 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V + P V++ LGAL +LA +S A +AI GSVGKTTTKE Sbjct: 63 KTFAIVEK-------KVDCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKE 115 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS + + NN IGV TL R+ D DF + E+G+++ GE+ + P Sbjct: 116 LVADFLSCRYSVCRSLENENNIIGVCKTLLRVE-DEDFCVVEVGINNPGEMEEIAAFFEP 174 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALG 243 + + H+ NF I+ I K++I + K+ + N DD E + K ++ G Sbjct: 175 DNVLFLNVTSTHIGNFENIDAIFKEKSKI---INKSSRLVYNADDEILKEAFEGKENSFG 231 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 FG D + R ++ V+++ +++ Y + + Sbjct: 232 ---FCFFG-----DCEFRA------ENNNNVKVEDITLKKPFGLNPYTVLSGFVAAFVFG 277 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D L F P G R R + + ++D YNAN SM AI L+++ Sbjct: 278 GF--KDETCFNDKLKAFKP---VGYRMRPEILEDKLFILD-CYNANVNSMMHAIDELAKL 331 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +GR++A+LGDM E+G S+ FH D+ L+ +I + + G + DA + Sbjct: 332 ----KGRKLAILGDMLELGSFSERFHRDVGLYLNGKDIDLLAVGG-DAFFIFDAF--NGK 384 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y +T ++ L D D+ ++K+S F + L Sbjct: 385 KYYCKTKPEAVELLKDKLTDYDIFLLKASRGMRFEDIFTRL 425 >gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684] gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684] Length = 447 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 119/395 (30%), Positives = 182/395 (46%), Gaps = 43/395 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G SIDSR++ P + + I DGH +I A+ GA + + V Sbjct: 19 PDVGVEGASIDSRTLRPGQLYVPIVA-ERDGHAYIPAALDAGAPAYLTEQEPVGGT---- 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D A+ +L V AR R I +TGSVGKTTTK++L L++ +T A S Sbjct: 74 --AIRVGDTAAAMLRLGVLARGRVGGAI-GVTGSVGKTTTKDLLAGCLAARFRTAASERS 130 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN +G+PLTL P + + E+G G+I L + RP + ++T++ AHL Sbjct: 131 FNNELGLPLTLFNAPEAARWAVLEMGARRAGDIERLAAVARPEVGIVTSVDMAHLEYMGD 190 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNA---- 256 ++ +A K E+ L +G LN+DD + + S LG YS G + Sbjct: 191 LDGVARVKGELVAALPASGLAVLNFDDPRVRGMASLSASPVLG----YSVGGDADVRADD 246 Query: 257 ---DFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 D LR +++ S EV+L VH G H N L + ++T Sbjct: 247 VTLDQDLRARFRLSSPWGQAEVRLG------VH---GLHQVPNALAAATVALWCGVPIET 297 Query: 313 AIKALSVFHPKEGRGKRYRCA---LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 AL+ + +G +R + G ++D YNA P S +A + L+ + GE Sbjct: 298 VAAALA-----QSKGSPWRMEVHHMPDGPLLVVD-CYNAMPTSTEAGLRSLAALP--GE- 348 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 R++A+LG M E+G+ S+S H +A V I V Sbjct: 349 RKLALLGLMAELGDHSESEHRRIARVAEELGIEAV 383 >gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum GMI1000] gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum GMI1000] Length = 482 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 206/461 (44%), Gaps = 23/461 (4%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 H +G P + ++ DSR++ P + F A+ G +D HDF+ V +GA V+V+ V Sbjct: 22 HLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPPVG 79 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--- 133 + V V D AL +LA R R ++A+TGS GKTT KEM++ + Sbjct: 80 IPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACAVGE 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 A G+ NN IG+PLTL R+ + ELGM+H GE L + +P +A+I Sbjct: 140 AARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQPTVALINNAQ 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249 H +E +A+ A + L G D + + L +A A G + + Sbjct: 200 REHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRA---AAGTRRVLD 256 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG A ++ ++V G +G H A+N L Sbjct: 257 FGIEGGAVSA--AVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAATACALAAGIA 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +ALS F P +GR +R + + G +ID++YNANP S++AAI L+ + Sbjct: 315 PEVIAQALSAFAPVKGRLQR-KPGHHGGL--VIDDTYNANPDSVRAAIDALATLP----A 367 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R VLGDM E+G +FH ++ I V +G + +A H++ + Sbjct: 368 PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELARHMVEAFGGGAR-HFA-S 425 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + L ++ G V+VK S R+++ L+ + PA Sbjct: 426 AEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] Length = 438 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 187/387 (48%), Gaps = 22/387 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG +DG+ F A+ KG +++ A + + + VD Sbjct: 16 ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRLIL--VD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L KLA R R +I ITG+ GKTTTKE+++ L+ G++NN +GV Sbjct: 74 DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L P +IT + AHL F E + Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193 Query: 210 KAEIFEGLEKTGT-IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L+ +FLN ++ ++ + + + I ++G+S +A+ + + C+ Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMARQRE----MNRIITYGQSDDANVR-GEVIDCA 248 Query: 268 ---EQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 SW ++ + + ++ EV H IG + NM + I + AL + Sbjct: 249 PFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVTPEQINHALESYV 308 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + A N+ LI ++YNANP+SM AAI ++ ++A+LGDM E+ Sbjct: 309 PANNRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMREL 361 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG 408 GE+S H L + L VWL G Sbjct: 362 GEVSDLEHQKLVDKLQADGFQEVWLVG 388 >gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 475 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 154/490 (31%), Positives = 219/490 (44%), Gaps = 63/490 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L Q + G G + DSR + A +G DGHDF+ A+ GA Sbjct: 5 TTRQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAALGNGA 64 Query: 66 GLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 VAS+ +P V DV A +LA + L ++A+TGS GKT+ Sbjct: 65 ---------VASLAEREVPGTYVLVPDVQEAFARLARWMVDEL-PDLQVVAVTGSSGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++L L+ T A I SYN+ +GVPLT+ R+ ++ + E+G S G I +LT + Sbjct: 115 TKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAEMGASGPGHIAYLTAI 174 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P + ++ + AHL F + IA KA I EGL G LN DD L+ A S Sbjct: 175 APPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGLPADGLAVLNADDP---LVAAMSER 231 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---------------VQLQGKSME-VVH 285 + + F S +AD R + S +W E V+ QG + VH Sbjct: 232 VTSGEVQYF--SLDAD---RAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPVH 286 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLI 342 + G HMA N L L V + D A+ ALS R+R + + +I Sbjct: 287 LRVRGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAI----SRWRMEVTERPDGVMVI 342 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSL 398 ++ YNANP SM+AA++ L ++ HG R AVL M E+G S + H ++ AEV Sbjct: 343 NDGYNANPESMRAALTALRDMA-HGR-RTWAVLAGMLELGPDSAARHREVGRHAAEVGVD 400 Query: 399 YNISHVWLS-----GFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + + G H A +D P I VH SE + ++ LVD DVV+ K Sbjct: 401 VVLVVGDTAAPIGEGVHDVSTAAGQDG-PVVISVHDSEEARSV---LEDQLVDQDVVLFK 456 Query: 451 SSNSCGFYRL 460 SS G L Sbjct: 457 SSRDSGMRVL 466 >gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 452 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 197/439 (44%), Gaps = 24/439 (5%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGVDD 90 IDSR F A KG DG+ + +Q GA +V+V + D+ I + V D Sbjct: 29 IDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACMVIVTDEDVYEQIEGNKVLV---AD 85 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L AL L R K IA+TGSVGKTTTKE+++ L + K+ Y G++NN +GV Sbjct: 86 ALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKELISEVLRTRKRVYTAYGNFNNELGVA 145 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + A M + + +FE+G + GEI L+ ++P I V+T I AH+ F GIE +A K Sbjct: 146 ICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPDICVVTGIGHAHIGRFEGIEGLAKEK 205 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 I G++K G +++ DS + S L + FG + L + + Sbjct: 206 LSIVSGMQKRGVLYIA--DSCRRFV--TSEVLEKTDVRYFGTDMASHIILGDVNRTVDGD 261 Query: 271 WMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + + Y H N L + I +K + F PK+GRG Sbjct: 262 FYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMAAGLSYTDVMKGIRKFQPKDGRG-- 319 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R G +ID++YNA S+ +A++ L+ I ++ A +G+M E+ + + Sbjct: 320 -RIKEVDG-IKVIDDTYNAGFESVISAMTNLAGIPVE---KKTAFIGEMGEIEGYEEMLY 374 Query: 390 IDLAEVLS-LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 L + S L N+ V++ R+ ++ +T + I S V V+ Sbjct: 375 FKLMKKASELTNVEFVFVGKNFA-----RFERTGNIKVVQTREEAMQLI--SKVSCGTVL 427 Query: 449 VKSSNSCGFYRLINLLLEE 467 K+S F LI L EE Sbjct: 428 FKASRGQKFEELIRHLEEE 446 >gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 511 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 118/420 (28%), Positives = 181/420 (43%), Gaps = 40/420 (9%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA------------GLVV 69 P V G + DSR + F A+ G DGHD+ A+ KGA +VV Sbjct: 23 PDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYATTAIDKGAVAVLAARPVGVPAIVV 82 Query: 70 VNTDMVASIGSLSIPVFGVDD--------VLGALNKLAVAARLRSKA--TIIAITGSVGK 119 V G+ + ++ D+ + AV RL ++ TI+ +TGS GK Sbjct: 83 EPHGRVEGDGA-NADIYANDEDGSAAAVVAALSAIARAVTQRLAAEQNLTIVGVTGSAGK 141 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ + +T A GS+NN IG+P T R + + E+ +G IR LT Sbjct: 142 TSTKDLIATIFREVGETVAPPGSFNNEIGLPYTALRCDEHTRYLVAEMSARGIGHIRHLT 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236 + P + V+ + AHL F E IA AK E+ E L E G LN DD F + Sbjct: 202 EITAPRVGVVLNVGTAHLGEFGSRENIAQAKGELVEALPNAEAGGVAVLNADDPFVAAMA 261 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-------KQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ A K +Y +++ ++ + S+ + + V G Sbjct: 262 PRTEA---KVVYYSTENRRGGAPAAQYYATDIVLDDVARPSFTLHSPDAEPVAVKLQVFG 318 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L L DT ALS + R + T+ID+SYNAN Sbjct: 319 SHQVSNALAAAAAAIELGVSADTVAAALSGH--RLASEHRMDVRTRRDGVTIIDDSYNAN 376 Query: 350 PASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P SM+ A ++ + + R IAVLG+M E+G ++ H L E L+ Y++ H+ G Sbjct: 377 PDSMRAAIAALAYTAAARPDARSIAVLGEMGELGSDAEQSHRQLGEFLAKYHVEHLIAVG 436 >gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] Length = 434 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 124/446 (27%), Positives = 200/446 (44%), Gaps = 42/446 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V ++ DSR F I G DGHD+I AV+KGA + + IPV Sbjct: 22 LVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPDNLVVIPV 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + AL A ++AITGS GKT+TK+M+ + L KT+ G++N+ Sbjct: 82 ---KSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKTAGNFNS 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G+PLT+ RMP D + + E+GM+ G+I L+ L +P +A +T I +H G Sbjct: 139 DVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDVAFVTNIGESHGEQVGGRTG 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA AK EI GL+ G + ++ D+ LL + Y G + AD ++ + Sbjct: 199 IAKAKLEIKAGLKADGRLIVDADEP---LLSGQG--------YRVGYDETADGKIEVIET 247 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA--------IKAL 317 + S + ++V +G H +N I L +D A IK Sbjct: 248 TFDASIFKYNGDLYELKV----LGAHQIRN--AAYAIACGLAFGLDHAMIQRGLDRIKLT 301 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+ K+ G+ + LI+++YNA+P SM AAI + + G +R+ VLGD Sbjct: 302 SMRMEKQMFGEAH----------LINDAYNASPTSMIAAIETIKSL--EGFSKRVLVLGD 349 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLF 436 M E+G Q H + ++ ++ L G + D + S ++V T++ Sbjct: 350 MYELGADEQMQHEQVGGAVT-SPVTDCILVGDKAKWIADGIQDSRVNVKMVPTVEEAKAL 408 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLIN 462 + VV++K+S RL+ Sbjct: 409 LHHYQRPDTVVLLKASRGLALERLVQ 434 >gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 468 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 210/451 (46%), Gaps = 40/451 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVFG 87 I DSR I + F A+KG DGH FI A+ +GA V++ + ++ S + I FG Sbjct: 33 IKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFFG 92 Query: 88 VD--DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V DV A L S I+A+TGSVGKTTTKE + L + + G+YN Sbjct: 93 VPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGNYNT 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +G LT+ P + +F + E+G + GEI + + RP +VIT++ P HL F GI+ Sbjct: 153 LLGCCLTILVAPRNTEFLVLEMGANAKGEIGEIANRFRPSSSVITSVDPVHLEGFGGIDG 212 Query: 206 IASAKAEIFEGLEKTGTIFLNYD----DSFFELLK---AKSHALGIKT--IYSFGKSK-- 254 + AK EI K +F+N D +S + LK +K ++G T IY S Sbjct: 213 VLGAKLEIVTADCK--LLFVNGDSPILNSGIDKLKHRPSKIISVGTSTSCIYRITDSSLR 270 Query: 255 -NADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + RK S +E +L GK H + +A + G+ D Sbjct: 271 LDGNHYFRKITIDSPFGLKTVESKLWGK-----QHTLIISLAFAVGCEYGVAP------D 319 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L V GRG + +G IDESYNA+P S+KAAI L I GR+ Sbjct: 320 DIAQGLFVMSLPRGRGAILQS--EEGVL-FIDESYNASPVSVKAAIDNLCLIPSR--GRK 374 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 IAVLG M E+G + FH ++ + + V + G + +V + M+ Sbjct: 375 IAVLGGMKELGSYANRFHDEILD-YAAKAADQVLIHGSEWKGINKNYK---NVLCLQDME 430 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + +++ L GDVV+VK S + R+ + Sbjct: 431 DIVNHLKAILRTGDVVLVKGSRAYEMERVYD 461 >gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus radiodurans R1] gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus radiodurans R1] Length = 433 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 196/444 (44%), Gaps = 82/444 (18%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR P AF A+ G G+ F+ A+ GA V+ + D+ ++ VD Sbjct: 23 LTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTDLDVPRAVR--------VD 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNN 145 D GAL A + R ++ ++ ITGS GKTT K AL + + T I + Sbjct: 75 DARGALFAWARSERAKNP-LVVGITGSAGKTTAKSYAAAALDAHFMPVFNTMPAIACFLV 133 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 G ++ P+ + E+G+ H+GE+ L LVRP + V+TTI PAHL F +E Sbjct: 134 QYGA----SQKPL-----VVEMGIDHIGEMAELMDLVRPDVGVVTTIGPAHLEQFGMVET 184 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA K +I L A+ +G + F K+ ++ Sbjct: 185 IAHEKGQI---------------------LTARRALVGSQAAAFFPKA--------QFPH 215 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA------------QNMLMTLGIVSILTADV--- 310 + +V +G+ +E+ + Q LG+V A + Sbjct: 216 VDSYGFGDVTFRGEGLELSPQAARFRFGGMGVILPLASRVQAEAAVLGMVLAREAGIALA 275 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-G 369 D A++ +V P G RYR L+ G FT+ID++YNA+P +++AA+ L + P GE G Sbjct: 276 DAAVRMSAVEVP----GGRYR--LHPGRFTVIDDAYNASPVAVRAALDALHALKPEGEVG 329 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 RRI+VLG M E+G + H AEV S G A + + T Sbjct: 330 RRISVLGRMLELGPTERELH---AEVGSYAREQADLTYGVGEFA------QELGERAFAT 380 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSN 453 + L + + + DGD+V+VK+S Sbjct: 381 VPELLADLLNEVRDGDIVLVKASR 404 >gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 505 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 143/493 (29%), Positives = 212/493 (43%), Gaps = 54/493 (10%) Query: 16 GHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ + I P V G + DSR IAP F A+ G +GHDF A++ GA L +++ DM Sbjct: 15 GYLVNIDPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFAAQAIKDGATLALLSRDM 74 Query: 75 VASIGSLSIP-VFGVDDVLGALN-----------------------KLAVAARLRSKATI 110 + ++ IP V V+ AL +L LR + Sbjct: 75 --GVPAVIIPHVEHVETNATALEYDRDGEGEAALAALSKLAHHTVTELVAHHGLR----V 128 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I +TGS GKT+TK+M+ L + +T A GS+NN IG P T R F + E+ Sbjct: 129 IGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTALRCTESTRFLVAEMSAR 188 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNY 227 +G I L + P I + + AHL F E IA AK E+ E L + G LN Sbjct: 189 GIGHIAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVEALPSADDGGVAILNA 248 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--------WKQCSEQSWMEVQLQGK 279 DD + ++ A I G++ + + S+ G+ Sbjct: 249 DDRLVSGMAPRTSARVITFSVKSGEAGDDPADDHDAVIATDVVLDSSARASFTLTMPTGE 308 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S V G H N L + + VD ALS H R + Sbjct: 309 SAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALS--HHTAASANRMDVRNRRDGV 366 Query: 340 TLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+I++SYNANP SM+A I+ L S + + + AVLG M E+G + H + E L Sbjct: 367 TIINDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGASATDEHYSIGEELGR 426 Query: 399 YNISHVWLSGF----HVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + I+HV + G LA KD+ + V + + +D + SS+ DVV++K+S Sbjct: 427 HQINHVVVVGNGVNQRALAHGAKDS---GVDVTHVDDVDAAVDNVWSSVRPDDVVLIKAS 483 Query: 453 NSCGFYRLINLLL 465 S G +R+ LL Sbjct: 484 YSDGLWRVAEGLL 496 >gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] Length = 456 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 126/438 (28%), Positives = 198/438 (45%), Gaps = 25/438 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q F N IS+DSR+I + F AIKG ++DGHDF+ ++KG VV+ D + + Sbjct: 26 QTFKN-ISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVI-RDGMQHLLPEKF 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P + V + L + KLA+ R ++ ITGSVGKTTTKEM+ L + K +Y Sbjct: 84 PYWLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLTQLNY 143 Query: 144 NNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 NN IGV R +D DF I E+GM LG+I L+ P IAVIT I +H+ Sbjct: 144 NNEIGV----GRTILDSDFKDKILIIEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGI 199 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-F 258 E I AK EI + L+ +G + + +D F E K+ + I + ++ D Sbjct: 200 LGSKENITYAKCEITKYLKPSGVVIIPANDLFLEETLKKNWSGRIIKVDLLDINQKVDSI 259 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + +S + ++ K E+ G+H A N L + + K Sbjct: 260 NKKNLIGFFNRSNNSIIIEDKLFEISLK--GFHNAFNFLFVYAVAKEFGIEFKDTNKF-- 315 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F +GR K + + DE+YNA+P S+KA I L + + G + Sbjct: 316 NFLTLDGRNKIIKSKKT----VIYDETYNASPESLKACIINLLNNPNN----HFLIFGSI 367 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLF 436 E+G S+ +H +L + + +I + D L +S + ++ + + Sbjct: 368 QELGSKSKKYHKELFDFIVKSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGIT 427 Query: 437 IQSSLVDGDVVVVKSSNS 454 I GD ++VK S + Sbjct: 428 INKYTKKGDFILVKGSRN 445 >gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus equi ATCC 33707] gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus equi ATCC 33707] Length = 506 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 143/506 (28%), Positives = 217/506 (42%), Gaps = 56/506 (11%) Query: 1 MNPLWTFHDLLQAIQG--HSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD-- 55 M P+ T + QA+ G H + P V+G + DSR I F A+ G DGHD Sbjct: 1 MIPM-TLAQIAQAVGGTLHDVDD-PSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHA 58 Query: 56 -------FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102 + + G+ + + + + G+ ++ + D VL AL KLA A+ Sbjct: 59 AGAVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDRDGSGAAVLAALGKLARASV 118 Query: 103 -RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 RL +++ T++ +TGS GKT+TK++L LS + A GS+NN +G P T R D Sbjct: 119 DRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADAD 178 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F + E+ G I L + P I V+ + AHL F E IA K E+ L Sbjct: 179 TRFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPS 238 Query: 220 T---GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G LN DD + ++ A + G S NAD + + +Q+ L Sbjct: 239 AADGGVAVLNADDPLVAAMADRTEA----RVVMVGLSGNADVRATDVR-LDDQARASFTL 293 Query: 277 QGKSMEV-----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + V VH G H N L + A +D AL P R R Sbjct: 294 TCAAGAVPVTLAVH---GEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSAR--RME 348 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSF 388 T++++SYNANP SM+AAI L ++ G G R AVLG+M E+G S Sbjct: 349 VRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVE 408 Query: 389 HIDLAEVLSLYNISHVWL--SGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQS 439 H + +++ + L G V A+ +IHV + ++ Sbjct: 409 HDAIGRFAVRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASA---IALLEQ 465 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 L GD+V+VK+S S G + + + +L Sbjct: 466 ELRAGDLVLVKASQSIGLWEVADAVL 491 >gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia AU 1054] gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia HI2424] gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia cenocepacia HI2424] Length = 468 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 116/452 (25%), Positives = 196/452 (43%), Gaps = 32/452 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N +S DSR++ + F A+KG +D HDF+ + + + +++P+ Sbjct: 27 NRVSTDSRTVGAGDLFVALKGERFDAHDFLGDVAAR----GAAAALVAHAPAGIAMPMIE 82 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYN 144 + AL LA R+R ++A+TGS GKTT KEM+ A A G+ N Sbjct: 83 GGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N +G+PLTL R+ + E+GM+H GE L L P +A++ H + ++ Sbjct: 143 NDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAPTVALVNNAQREHQEFMATVD 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A A + L G DD++ + + + I + D Q+ Sbjct: 203 AVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRILDFALHDAERQNDAQVVGRM 262 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 E + + ++ V +G H A+N L + + L F P + Sbjct: 263 HGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAALGAGVALSAIRQGLEAFEPVK 319 Query: 325 GRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMG 382 GR + + ++ G T++D++YNANP SM+AAI VL + +P R+ V+GDM E+G Sbjct: 320 GRLQVKQASVGSLGGATVVDDTYNANPDSMRAAIDVLAAHPAP-----RVLVIGDMGEVG 374 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQS 439 + +FH ++ I ++ AL DA R Y +T D + + + Sbjct: 375 DEGPAFHREIGAYARERGIDALF-------ALGDA-SRDACTAYGDTARHFDDVGALVSA 426 Query: 440 SLVDG----DVVVVKSSNSCGFYRLINLLLEE 467 L G V+VK S R+++ L + Sbjct: 427 LLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458 >gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 427 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 209/450 (46%), Gaps = 49/450 (10%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 ++S+ + + F A+KG +DGHDFI A+++GA V+ +V S + + Sbjct: 11 LNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDRIVLVK------- 63 Query: 92 LGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + LA ARL+ S TII ITGS GKTTTKE+L L + + G+ N G Sbjct: 64 -NTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEYG 122 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL++ + + E+ + G+I L + P +AV+ + AHL F E I Sbjct: 123 LPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGSAHLEFFKSRENIME 182 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI + +K + +DD L+ K L ++ FG +K D L W Sbjct: 183 AKLEIVKHSKKDSAVVTFFDDGD---LRKKVPVLRENVLF-FG-TKGGDVVLEDWWYYEN 237 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVD----TAIKAL-SVFH 321 + E ++ G S + G ++ Q N+ +L ++ +L VD + +KA+ F+ Sbjct: 238 STISEYRMFGSSFTIKLPGF-WNRGQLLNLAASLCVMKVLGEKVDVLELSNLKAVPGRFN 296 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 KE G R +ID++YNA+P + + AI L + GR+ AV+G M E+ Sbjct: 297 VKEVEGVR-----------IIDDTYNASPEAFQMAIEALLKFP----GRKFAVVGAMKEL 341 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYSETMDGLFLFIQ 438 GE S+ FH L + L L G +V + + + V +++ + + + Sbjct: 342 GEESKKFHEMLGKQLDA-------LDGVYVFSTEPEAGWIKTRKKVLETDSAEEIARDLY 394 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + GD V+ K+S + R++ + E Sbjct: 395 TRVRKGDTVLFKASRAVRIERVLEIFEREL 424 >gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia MC0-3] gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia MC0-3] Length = 468 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 175/390 (44%), Gaps = 25/390 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF+ + Sbjct: 7 GEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDVAAR---- 62 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + +++P+ + AL LA R+R ++A+TGS GKTT KEM+ Sbjct: 63 GAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN +G+PLTL R+ + E+GM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEVLARLTAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWRVAATGNRI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + D Q+ E + + ++ V +G H A+N L Sbjct: 243 LDFALHDAERQNDAQVVGRMHGGE---LAIDTPAGAVTVRLRALGEHNARNALAATAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 + + L F P +GR + + ++ T++D++YNANP SM+AAI VL + Sbjct: 300 GAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAIDVLAAH 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +P R+ V+GDM E+G+ +FH ++ Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces oris K20] Length = 483 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 149/489 (30%), Positives = 224/489 (45%), Gaps = 39/489 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G IG P V G + DSR A F A+ G DGH + A G Sbjct: 8 SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVLG 65 Query: 65 AGLVVVNTDMVASIGSLSI-----PVFG---VDDVLGALNKLA---------VAARLRSK 107 A +V +D+ A+ LS+ P G V+D + AL LA AA + Sbjct: 66 AVGAIV-SDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGER 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ + + E+ Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G S G I +LT + A + I AH+ F IE +A+AKAEI GL GT LN Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTAILNA 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEV 283 DD+ + + + +F + + AD + + ++ ++ L G + V Sbjct: 245 DDARAAAMAELA----PARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRV 300 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L G+ V + ++S+ P R + G Sbjct: 301 QLAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESP-----HRMDISELSGDLL 355 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID+SYNAN SM AA++VL ++ G+ RR+ V+ +M E+GE S + H E+ + Sbjct: 356 LIDDSYNANIDSMTAALAVLPALA--GDRRRVVVISEMLELGESSAADHARTGELAARAG 413 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + G AL+ A R + V + I + L DGD V+VK SN G +RL Sbjct: 414 AAMLIGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRL 473 Query: 461 INLLLEEFP 469 + L E P Sbjct: 474 ADHLKEVRP 482 >gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia vietnamiensis G4] gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia vietnamiensis G4] Length = 468 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 41/398 (10%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR+ P + F A+KG +D HDF L V Sbjct: 7 GEAARLIPGAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDF-LGDVAARGAA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + A L++PV + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 66 AALVAHVPAG---LAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN IGVPLTL R+ + ELGM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNHPGETDVLARLAAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ GI Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAY----------AGI 232 Query: 245 KTIYSFGKSKNADFQLRK-WKQCSEQ-------SWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + G ++ DF L +Q Q + + ++ V +G H A+N Sbjct: 233 WRVAATG-NRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355 L ++ + L F P +GR + R + T++D++YNANP SM+A Sbjct: 292 LAATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRA 351 Query: 356 AISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 AI VL +Q +P R+ V+GDM E+G+ +FH ++ Sbjct: 352 AIDVLAAQAAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pecorum E58] gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pecorum E58] Length = 435 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 218/449 (48%), Gaps = 42/449 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDSR + P + FFA+ G DGH+F+ HA Q GA V++ + + + Sbjct: 14 ISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGD--NYGLEFV 71 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL + + + II I+GS+GKTTTKE + LSS+ + + SYN+ Sbjct: 72 RVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRVFMSPKSYNSQ 131 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205 + VPL++ D DF + E+G+S ++ L +V+P +AVIT IA H +F GI+E Sbjct: 132 LTVPLSILMADGDEDFLLLEMGVSEPKDMHNLLSIVQPEVAVITHIATQHTMHFPRGIQE 191 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I K +I +G + L D +++ L S + K +SF + ADF Sbjct: 192 IVEEKRQILQG---SSLQLLPKDSPWYKDLCEVSPS-AEKFSFSF-HDQAADF------- 239 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALS 318 C + + G +++ I +A N+L+++ + +L ++ I +L Sbjct: 240 C----YKSLDSHGVTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLETPLEHLISSLP 295 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + R+ +L G +I+++YNA P +M AA+ L SP G+ I +LG M Sbjct: 296 DL---KLPPMRFEQSLRNGIH-VINDAYNACPEAMLAALEALP--SPSNGGKVILILGHM 349 Query: 379 CEMGELSQSFHIDLA-EVLS----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 E+G S+ H +A + LS ++ I W H++ S V + + Sbjct: 350 AELGVYSEEGHALVATKALSRAHVIFFIGEKWSPVLHMVQH-----HSCQVEFYSAPHDI 404 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + ++ + GDVV++K S S L+N Sbjct: 405 EMILKDLVQQGDVVLLKGSRSLALESLLN 433 >gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella ruminicola 23] gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella ruminicola 23] Length = 478 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 204/450 (45%), Gaps = 37/450 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A+KG ++G+ F L A++KG +V+ D+ + VD Sbjct: 51 ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVANDPR-----IIKVD 105 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L LA R + +I ITG+ GKTTTKE++ LS G++NN +GV Sbjct: 106 NCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFNNDVGV 165 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L P +IT + AHL F E + Sbjct: 166 PKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNVGRAHLQGFGSFEGVIKT 225 Query: 210 KAEIFEGL--EKTGTIFLNYDDSFF-------ELLKAKSHALGIKTIYSF--GKSKNADF 258 K E+++ L + IF+N D+ E + ++ YS G+ + Sbjct: 226 KCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYSTDPDNQYSCISGEVLECNP 285 Query: 259 QLR-KWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 L+ +W+ + M ++ +G+S +V IG + N+L + + D + Sbjct: 286 FLKFRWR----EPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIAVGINFGVDRKKIV 341 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL + P R + N LI ++YNANP+SM+AA+ + ++A+ Sbjct: 342 AALEAYEPSNNRSQMTVTEKNH----LIVDAYNANPSSMQAALENFKIMQADN---KMAI 394 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LG M E+GE+S H + + L +I VWL G ++ + ++ + Sbjct: 395 LGAMRELGEVSAEEHQHVVDYLKTSDIKTVWLVG------EEFEDTQCDFRKFKDVEEVK 448 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I + G +++K SNS Y+L LL Sbjct: 449 AAIAAEQPTGHYILIKGSNSTKLYQLPELL 478 >gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 397 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 122/407 (29%), Positives = 185/407 (45%), Gaps = 67/407 (16%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 G + +V + A I L V D AL +L R + ++ +IA+TGS GKTT Sbjct: 4 NGCQVAIVERPIDAEIAQLV-----VADTRLALGQLGAYRREQNAQLKVIALTGSSGKTT 58 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML LS + T G+ NN +GVP+ L + + + + ELG +H GEI + + + Sbjct: 59 TKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKI 118 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKS 239 V+PH+A I I AHL F G + I AK+EI+ + G + D F ++ AKS Sbjct: 119 VQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIREAAKS 178 Query: 240 HALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 H I SFG ++A+FQL + S++ + G+ Sbjct: 179 H-----QIMSFGAGGDVFATEIELLPQSANFQLHTPQGS---SFVRLPFAGE-------- 222 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 H QN + L ++ +K L+ +GR + A + ID++YN Sbjct: 223 ---HNVQNATAAVAFALALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH----LFIDDTYN 275 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406 ANP SM+AA VL Q + G ++ V+GD+ E+G+ S H DL L+ + H+ Sbjct: 276 ANPTSMRAAAQVLLQQN----GIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAV 331 Query: 407 ----------SGFHVLALK------DALP---RSIHVHYSETMDGLF 434 +G H LK +ALP I H ++M LF Sbjct: 332 GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLF 378 >gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces viscosus C505] gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces viscosus C505] Length = 483 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 147/491 (29%), Positives = 221/491 (45%), Gaps = 43/491 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G IG P V G + DSR A F A+ G DGH + A G Sbjct: 8 SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDLG 65 Query: 65 AGLVVVNTDMVASIGSLS------IPV--FGVDDVLGALNKLA---------VAARLRSK 107 A +V +D+ A+ LS +P+ V+D + AL LA AA + Sbjct: 66 AVGAIV-SDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDR 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ + + E+ Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G S G I +LT + A + I AH+ F IE +A+AKAEI GL G LN Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPEGIAILNA 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEVV 284 A + + + + + AD + + ++ ++ L G + V Sbjct: 245 ---DDARAAAMAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQ 301 Query: 285 HHGIGYHMAQNMLMTLGIVSI------LTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 G H N L G+ L AD + ++S+ P R + G Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGLAPELVAD---RLGSVSIESP-----HRMDISELSGD 353 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 LID+SYNAN SM AA++VL ++ G+ RR+ V+ +M E+GE S + H E+ + Sbjct: 354 LLLIDDSYNANIDSMTAALAVLPALA--GDRRRVVVISEMLELGESSAADHARTGELAAR 411 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + + G AL+ A R + V + I + L DGD V+VK SN G + Sbjct: 412 AGAAMLIGIGSTQEALEAARARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAW 471 Query: 459 RLINLLLEEFP 469 RL + L E P Sbjct: 472 RLADHLKEVRP 482 >gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 465 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 39/378 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS DSR+I + F + G +D HD++ A G VV ++ + + +P + V Sbjct: 30 ISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAFDLGIQAAVV-SEKYNGLVPIGLPHWVVP 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A ++A+ R ++A+TGSVGKTTT+E++ LS + + + G+ NN IGV Sbjct: 89 DTLYAYQQIALLHRRNLNLPVVAVTGSVGKTTTRELIRAILSPLGEIVSSRGNENNDIGV 148 Query: 150 PLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T L+ D F + E+GM G+I L+ + P IAVIT + AH+ E IA Sbjct: 149 PKTLLSGSETDAAF-VLEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAK 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK+EI L G + + + D E + + I + G S N W C+ Sbjct: 208 AKSEITSYLSPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLN-------WLDCNN 260 Query: 269 Q------------SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + S +++Q +G+ ++ G H A N L+ L + + L + Sbjct: 261 EHFAFQDIEPDYISQIDMQNNFILFEGRKFKLPLE--GRHNAMNFLLALTVATELGLSI- 317 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L + P GR + C G + ++DE+YNA+P S+ A++ +L GR Sbjct: 318 KKLDQLKINMPI-GRNRLVDC----GQYLVLDETYNASPESVIASLELLVS----KPGRH 368 Query: 372 IAVLGDMCEMGELSQSFH 389 AVLG M E+G S H Sbjct: 369 FAVLGTMLELGSESILLH 386 >gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] Length = 465 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 39/378 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS DSR+I + F + G +DGHD++ A G VV ++ + +P + V Sbjct: 30 ISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAFDLGIQAAVV-SEKYNGLVPTGLPHWVVP 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A ++A+ R ++A+TGSVGKTTT+E++ LS + + + G+ NN +GV Sbjct: 89 DTLYAYQQIALLHRRNLSLPVVAVTGSVGKTTTRELIRAILSPLGEIVSSRGNENNDVGV 148 Query: 150 PLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T L+ D F + E+GM G+I L+ + P IAVIT + AH+ E IA Sbjct: 149 PKTLLSGSETDAAF-VLEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAK 207 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK+EI L G + + + D E + + I + G S N W C+ Sbjct: 208 AKSEITSYLSPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLN-------WLDCNN 260 Query: 269 Q------------SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + S +++Q +G+ ++ G H A N L+ L + + L + Sbjct: 261 EHFALQDIEPDYISQIDMQNNFILFEGRKFKLPLE--GRHNAMNFLLALTVATELGLSI- 317 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + L + P GR + C G + ++DE+YNA+P S+ A++ +L GR Sbjct: 318 KKLDQLKINMPI-GRNRLVDC----GQYLVLDETYNASPESVIASLELLVS----KPGRH 368 Query: 372 IAVLGDMCEMGELSQSFH 389 AVLG M E+G S H Sbjct: 369 FAVLGTMLELGSESILLH 386 >gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 17/234 (7%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 +D R P F A G H DGHD+ A Q GA VA +GS ++P V+ Sbjct: 31 LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGA---------VAVLGSRPTALPTVVVE 81 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LA V ARLR + T++ +TGS GKT+TK++L LSS T A G+ NN + Sbjct: 82 DARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F + E+G +G++ LT LV +AV+ + AHL F IA Sbjct: 142 GVPLTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 K E+ GL GT LN DD +++ + + +FG +++AD ++R Sbjct: 202 EGKGELVRGLVPGGTAILNADDPRVVAMRSLTDG----PVLTFGHAEDADVRVR 251 >gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 17/234 (7%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGVD 89 +D R P F A G H DGHD+ A Q GA VA +GS ++P V+ Sbjct: 31 LDGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGA---------VAVLGSRPTALPTVVVE 81 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LA V ARLR + T++ +TGS GKT+TK++L LSS T A G+ NN + Sbjct: 82 DARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAVLSSAAPTIATKGNLNNEL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R F + E+G +G++ LT LV +AV+ + AHL F IA Sbjct: 142 GVPLTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA 201 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 K E+ GL GT LN DD +++ + + +FG +++AD ++R Sbjct: 202 EGKGELVRGLVPGGTAILNADDPRVVAMRSLTDG----PVLTFGHAEDADVRVR 251 >gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] Length = 462 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 213/450 (47%), Gaps = 47/450 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS+ P FFAI+G DGH+F+ A GA VV T V +S+P V Sbjct: 32 VSFDSRSVRPNGLFFAIEG-ERDGHEFVQAASDAGAAAAVV-THFV----PVSLPQVLVK 85 Query: 90 DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------ACIG 141 D AL L A + RSK +IA+ GS GKTTT +M+ LS IK+ + G Sbjct: 86 DTREAL--LDSAKKWRSKFDLPVIAVAGSNGKTTTTQMV---LSIIKERFQKGAWVGTEG 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GV L L ++ + FE+GM+H+GE+R L + P I +T H + Sbjct: 141 NLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLA 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD 257 +EE A E+F L + G +N D F ++ + A G + +FG + + Sbjct: 201 SLEETAKENGEVFAQLPRQGVAVINAADPF--AVEWRKMA-GNNRVVTFGTPDSDVYACE 257 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + ++ + ++++L+ G H N + ++ + D+ K L Sbjct: 258 VEGTAFRLVTPIGQIDIELKVP---------GKHNIVNAVNAAAVLFAMGRDLCDIKKGL 308 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376 F RG+ L+ G +ID+SYNANP SM AA+++LS+ P +I V G Sbjct: 309 ENFEAVSHRGE--VVTLDDG-SVVIDDSYNANPDSMNAAVNMLSEYQLP-----KIFVAG 360 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G S FH +L E + I + + G +L + H+ ET + L Sbjct: 361 DMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAVEGYGEGAR-HF-ETQEELLAA 418 Query: 437 IQSSLVDGD-VVVVKSSNSCGFYRLINLLL 465 ++ +V G V+ K+SN ++L + L+ Sbjct: 419 LKEEMVKGPHAVLFKASNFMKLFKLADELV 448 >gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] Length = 462 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 213/450 (47%), Gaps = 47/450 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS+ P FFAI+G DGH+F+ A GA VV T V +S+P V Sbjct: 32 VSFDSRSVRPNGLFFAIEG-ERDGHEFVQAASDAGAAAAVV-THFV----PVSLPQVLVK 85 Query: 90 DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------ACIG 141 D AL L A + RSK +IA+ GS GKTTT +M+ LS IK+ + G Sbjct: 86 DTREAL--LDSAKKWRSKFDLPVIAVAGSNGKTTTTQMV---LSIIKERFQEGAWVGTEG 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN +GV L L ++ + FE+GM+H+GE+R L + P I +T H + Sbjct: 141 NLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLA 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----AD 257 +EE A E+F L + G +N D F ++ + A G + +FG + + Sbjct: 201 SLEETAKENGEVFAQLPRQGVAVINAADPF--AVEWRKMA-GNNRVVTFGTPDSDVYACE 257 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + ++ + ++++L+ G H N + ++ + D+ K L Sbjct: 258 VEGTAFRLVTPIGQIDIELKVP---------GKHNIVNAVNAAAVLFAMGRDLCDIKKGL 308 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376 F RG+ L+ G +ID+SYNANP SM AA+++LS+ P +I V G Sbjct: 309 ENFEAVSHRGE--VVTLDDG-SVVIDDSYNANPDSMNAAVNMLSEYQLP-----KIFVAG 360 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G S FH +L E + I + + G +L + H+ ET + L Sbjct: 361 DMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAVEGYGEGAR-HF-ETQEELLAA 418 Query: 437 IQSSLVDGD-VVVVKSSNSCGFYRLINLLL 465 ++ +V G V+ K+SN ++L + L+ Sbjct: 419 LKEEMVKGPHAVLFKASNFMKLFKLADELV 448 >gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria MC40-6] gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria MC40-6] Length = 468 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF L V Sbjct: 7 GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + A L++PV + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 66 AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN IGVPLTL R+ + ELGM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + Q+ E + + +M V +G H A+N L Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPAGAMTVRLRALGEHNARNALAAAAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 ++ + L F P +GR + + + T++D++YNANP SM+AAI VL +Q Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +P R+ V+GDM E+G+ +FH ++ Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax sp. JS42] gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax sp. JS42] Length = 482 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 116/405 (28%), Positives = 180/405 (44%), Gaps = 36/405 (8%) Query: 2 NPLWTFH---DLLQA-IQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 +P+ T H DLL+A I G + G P + D+R++A + F A+KG +D H Sbjct: 8 SPMMTLHQAFDLLRARIPGVRLVGEGATPLARAH---TDTRTLAAGDLFVALKGERFDAH 64 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 F+ + A + +P V D L AL LA R + +IA+T Sbjct: 65 QFL----SQARRAGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLPLIAVT 120 Query: 115 GSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTT +M+ L + K A G++NN +GVPLTL R+ + + ELGM+H Sbjct: 121 GSNGKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHP 180 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + RP +A++ HL +E +A + L GT D+F Sbjct: 181 GEIANLADIARPTVALVNNAQREHLEFMHTVEAVARENGSVLSALPADGTAVFPAADAFT 240 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW------MEVQLQGKSMEVVHH 286 L + + G + +FG++ ++R C+ W + + + + Sbjct: 241 PLWRELA---GTRHCLTFGETAG---EVR----CAAAQWGGGAWQVRIDTPNGAFDTRLA 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + + + L+ F P GR + T++D+SY Sbjct: 291 IAGRHNVTNALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGRSITVVDDSY 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 NANP S+ AAI VL+ + G R+ VLGDM E+G+ FH + Sbjct: 351 NANPDSVHAAIEVLAALP----GPRLLVLGDMGEVGDQGPQFHAE 391 >gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 446 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 186/378 (49%), Gaps = 28/378 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I IDSR + + F A+KG DG+DFI A+++GA V N S + VF Sbjct: 21 IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNR------SSDNPAVFFHP 74 Query: 90 DVLGALNKLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L + AA + + I IAITGS GKTTTKE+L LS K + G+ N Sbjct: 75 DPKKLL--IEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLNTE 132 Query: 147 IGVPLTLARMP---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 IG+P+ + + D+ IFE G S G+I FLT LV P IAV+ + AH NF+ Sbjct: 133 IGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLNVGTAHRGNFNDE 192 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+ K IFE L+K T N DD + +++ L K ++ FG+ +N D ++ K+ Sbjct: 193 TELLQEKCSIFETLQKDSTAITNGDD---KRIRSMISELSCKKLF-FGQ-RNGDLKIMKF 247 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322 +++ + G+ GI ++ Q + ++ L+ ++ + ++ + P Sbjct: 248 DYSKNNTFVAFKAFGEMKMAKLKGI-WNSGQLLDFGAAYLTALSLKIEEPLLNINRIILP 306 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R N LI++ YN++ S+++AI ++++ R AV+G + E G Sbjct: 307 FNNRF----SVENIAGIILINDCYNSSLESVESAIKSIAKLKKE---RTFAVVGSILEQG 359 Query: 383 ELSQSFHIDLAEVLSLYN 400 + S+ H +L +L+ ++ Sbjct: 360 KYSKKTHEELGRLLNFFD 377 >gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium diphtheriae NCTC 13129] gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium diphtheriae] Length = 496 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 143/479 (29%), Positives = 208/479 (43%), Gaps = 50/479 (10%) Query: 20 GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI-------------LHAVQKGA 65 G P+ V G + DSR ++ F A+ G DGHDF+ H V+ + Sbjct: 20 GTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVPAALESGAAAALVAHPVKIDS 79 Query: 66 GL-----VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-----LRSKA-TIIAIT 114 GL V T S S + V L + + AR L ++ T++ +T Sbjct: 80 GLAPAIVVPPATGQQQSANSYATEHDEDGSVAAVLQGMGLIARRVIDTLTAQGLTVMGVT 139 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKT+TK+ML LS+ T A GS+NN IG P T R + + E+ +G Sbjct: 140 GSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPYTALRCTEQTRYLVAEMSARGIGH 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + P I V+ + AHL F E IA AK E+ E L G LN DD Sbjct: 200 IAHLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELVEALPHDGVAVLNADDDLVAG 259 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI-GYHM 292 ++ ++ A K I S++AD + + + L G++ VV + G H Sbjct: 260 MRTRTDA---KVITFSANSQDADVYATDI-ELDDYARARFTLHIGEAENVVTLRVAGQHQ 315 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANP 350 N L +D +ALS +R AL T+ID++YNAN Sbjct: 316 VSNALAATAAAYAAGIAIDDIAEALS----NHLGASAHRMALMHRSDGATIIDDAYNANT 371 Query: 351 ASMKAAISVLSQI----SPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 SM+A ++ LS S GE AVLG M E+GE S + H ++ +L N+ + Sbjct: 372 ESMRAGLTALSTTAHNKSHKGEASHAWAVLGPMSELGEESVAAHEEIGRLLGELNVHGLI 431 Query: 406 LSGFHV--LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + G LAL D RS + +T + L Q ++ DV +VK+SN+ YRL Sbjct: 432 VVGDSADSLALADGARRSNVTTLMARDTAEAADLLDQ-NMGSADVALVKASNA---YRL 486 >gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris RCH1] Length = 478 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/401 (27%), Positives = 184/401 (45%), Gaps = 33/401 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88 + DSR +AP + F I+G +DGHDF V++GA +++ D S + + V Sbjct: 29 VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAERDPFNGECPSADVTIMVV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD + AL +LA R+RSKA ++ +TG+ GKTT KE+L L T + NN IG Sbjct: 89 DDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL++ + F + E G+S ++ L ++RP I ++ + H++ G +A Sbjct: 149 LPLSMLEATGNESFWVMEAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGL-GDRGVAY 207 Query: 209 AKAEIFEGLEKTGT--IFLNYDD---------SFFELLKAKSHALGIKTIYS--FGKSKN 255 K+ + L + GT + +YDD + A +G + Y + Sbjct: 208 YKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAG 267 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313 +D +R V L G EVV G A+N+ + L+ + A Sbjct: 268 SDGGVR--------GRYRVWLDGSVHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAA 319 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 A +V P++ R+ CA G F ID++YNANP S + +++++ G + Sbjct: 320 GLAEAVL-PRQ----RFACA-TVGGFVCIDDTYNANPLSSARMVEAVTEMAAGGP--LVF 371 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 VLG+M E+GE + H L L+ V+ G + A+ Sbjct: 372 VLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAV 412 >gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella marshii DSM 16973] gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella marshii DSM 16973] Length = 433 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 182/392 (46%), Gaps = 37/392 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS---LSIPVF 86 I+ D+R FFA+ G ++G+ F A++ G VV+ A+ L +P Sbjct: 16 ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYANADDDRYLMVP-- 73 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L AL LA R + A II ITG+ GKTTTKE++ L+ G++NNH Sbjct: 74 ---DSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNNH 130 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP TL R+ + + G+ E+G +H GEI L + P +IT + AHL F E + Sbjct: 131 IGVPKTLLRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNVGKAHLEGFGSFEGV 190 Query: 207 ASAKAEIFEGLEK--TGTIFLNYDDSF-------FELLKAKSHALGIKTIYSFGKSKNAD 257 K E+++ L T+F++ D+ + L++ I S Sbjct: 191 IKTKGELYDFLRTKLKSTVFIDNDNPYLCDISQGLNLVRYGCRPAENLLIEGQAASSTPL 250 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 Q R W+ S +W +V Q IG + N+L + + + AL Sbjct: 251 LQFR-WRH-STDAWHDVGTQ---------LIGSYNLTNLLAAACVGLYFSIAPEQIDHAL 299 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLG 376 S + P R + A N+ LI ++YNANP SM AA++ ++ P +++A+LG Sbjct: 300 SHYTPGNNRSQLAVTAHNR----LIIDAYNANPTSMNAALTNFEEMDVP----KKMAILG 351 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 DM E+G +S + H L + L I VWL G Sbjct: 352 DMKELGTVSHAEHQKLVDGLRHSTIHTVWLVG 383 >gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 447 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G +IDS+ + P + FFA+ G DGH F+ HA GA VV+ D S + + Sbjct: 26 ITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL + + T++ ITGSVGKTTTKE LSSI KT+A SYN+ Sbjct: 84 RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205 + VPL+L D D I E+G+S G ++ L +V+P IAVIT I H +F GI+E Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I K+ I L+K+ L D ++ L++ S K +SF ADF +K Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S S + +Q ++ + Y A N+L+ + + IL + I++L + Sbjct: 256 ISRDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R+ ++ G +I+++YNA P +M AA+ L P G+ I +LG M E+G Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367 Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 S+ H +AE + ++ I W+ VL S V + + + ++ Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 GDV+++K S + L+ Sbjct: 423 VARYGDVILLKGSRALALESLL 444 >gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria IOP40-10] gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria IOP40-10] Length = 468 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF L V Sbjct: 7 GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + A L++PV + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 66 AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN IGVPLTL R+ + ELGM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + Q+ E + + +M V +G H A+N L Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPSGAMTVHLRALGEHNARNALAAAAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 ++ + L F P +GR + + + T++D++YNANP SM+AAI VL +Q Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +P R+ V+GDM E+G+ +FH ++ Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599] gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 388 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 109/351 (31%), Positives = 166/351 (47%), Gaps = 14/351 (3%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IA+TGS GKTTTKEM+ LS TY + + N R+ + + E G+ Sbjct: 22 VIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIRDEHKAAVLEYGI 81 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 G +R +++P + VIT I AH+ NF G +++A AK E+ ++ TGT+FLN D Sbjct: 82 YRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTELIRHMKPTGTVFLNRD 141 Query: 229 DSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + LG T I +FGK + AD++ + K E L+G+ Sbjct: 142 CPYSREFVQQPY-LGSFTGKIVTFGKEQEADYKAGRTKIEGNGFRFECSLRGEKESFFVP 200 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + + + VD + LS F + R YR A N ++D++Y Sbjct: 201 IPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYRLANN---IQVLDDTY 257 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++NP + KAAI VLSQ+ G +IAVL M EMG+ H D+ LS N+ +++ Sbjct: 258 SSNPDAAKAAIDVLSQV---GHTTKIAVLASMLEMGKYDVKGHEDVGIYLSQKNVDYLYT 314 Query: 407 SGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 G + A RS V + + GL + L +VK SN Sbjct: 315 LGNSARYIARAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLVKGSN 365 >gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus jostii RHA1] gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus jostii RHA1] Length = 504 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 131/483 (27%), Positives = 211/483 (43%), Gaps = 54/483 (11%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV----------VVN 71 P V G + DSR + F A+ G H DGHD AV+ G V +V Sbjct: 23 PSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAASAVEAGVVAVLAARPVGVPAIVV 82 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-------LRSKA-TIIAITGSVGKTTTK 123 T + + S ++ + D GA A+A L +K T++ +TGS GKT+TK Sbjct: 83 TPTPSDVPSKAMALEHDTDGSGAAVLAALAKLARASVDGLTAKGLTVVGVTGSAGKTSTK 142 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++L L + A GS+NN +G P T R D F + E+ G I L ++ Sbjct: 143 DLLAAVLRPLGPVVAPPGSFNNELGHPWTALRADADTGFLVLEMSARGRGHIASLANIAP 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSH 240 P I V+ + AHL F + IA+AK E+ E L ++ G LN DD + ++ Sbjct: 203 PKIGVVLNVGTAHLGEFGSRDAIAAAKGELAESLPSADEGGVAILNADDPLVAAMAPRTS 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKW---KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A + G+S++A + ++ + + ++E+ H G H N L Sbjct: 263 A----RVVLVGRSESAHVRATDIVLDEKARARFTLTAPTGSVAVELAVH--GEHQVGNAL 316 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + AD++ +ALS R R T++++SYNANP SM+AA+ Sbjct: 317 AAAAVALECGADLEQIAQALSGAAAVSAR--RMDVRDRPDGVTVVNDSYNANPDSMRAAL 374 Query: 358 SVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 L ++ G G R AVLG+M E+G S H + ++S + + G A Sbjct: 375 KALVSMARSGRGAARRSWAVLGEMAELGPESVVEHDAIGRFAVRLDVSRLIIVGTGRPA- 433 Query: 415 KDALPRSIHV------HYSET------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 R++H + E + G +++ L GD+V+VK+S S G + + + Sbjct: 434 -----RAMHQGAVMEGSWGEESILVPDIAGAVALLEAELAPGDLVLVKASQSIGLWEVAD 488 Query: 463 LLL 465 +L Sbjct: 489 TVL 491 >gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. BTAi1] gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 458 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 204/465 (43%), Gaps = 46/465 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----------PHYD 52 LWT ++ +A+ G P+ ++ ++ DSR++ P F A+ G D Sbjct: 5 LWTVAEVARAL--GLAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRD 62 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATII 111 G +F +A Q GA ++V I +S+P V D L L LA AAR R +I Sbjct: 63 GWEFAANAEQAGAVAMIVPH----RIDGISVPQLVVPDTLIDGLWALARAARARFHGPVI 118 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 +TGS GKT+TKE + ++ A S+NN GVPLTL + E+GM+ Sbjct: 119 GLTGSAGKTSTKEFI----AAYPGASASPSSFNNFWGVPLTLCNADPSASVWVVEMGMNQ 174 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI LT L +P +A++ + P HL +E I K I GL G + L D + Sbjct: 175 QGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGLPSDGILVLPVDLAA 234 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E + FG AD E + + G+ + H Sbjct: 235 PEW---------PGRVLRFG--AGADVHAMSQVPAGESWDVTADIAGRHLAFSLTPGAPH 283 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L L V+ D + L GRG R G LID+S+N NPA Sbjct: 284 RLHNALAALASVAAAGLDPVLLARELGEVGIMTGRGVEQRI----GEIVLIDDSFNGNPA 339 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM AA+ L Q P GRRIAV+GDM E+G+ + ++H D+ V + I V+ G + Sbjct: 340 SMAAALDSL-QARPV-RGRRIAVIGDMLELGDEAPAYHADM--VGHVTGIDGVYCVGPLM 395 Query: 412 LALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSN 453 L + LP + + E T+D + + L DVVV+K S Sbjct: 396 RHLFEKLPPEKRLGWHEDPATLDA--SQVAALLAPDDVVVIKGSK 438 >gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CMR15] Length = 485 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 208/464 (44%), Gaps = 26/464 (5%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-- 74 H +G P + ++ DSR++ P + F A+ G +D HDF+ V +GA V+V+ + Sbjct: 22 HLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRRLAD 79 Query: 75 VASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + + LS + V V D AL +LA R R ++A+TGS GKTT KEM++ + Sbjct: 80 MPDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMISAVFACA 139 Query: 134 ---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 A G+ NN IG+PLTL R+ + ELGM+H GE L + +P +A+I Sbjct: 140 VGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQPTVALIN 199 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKT 246 H +E +A+ A + L G D + L +A A G + Sbjct: 200 NAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYAPLWRA---AAGTRR 256 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + FG A + ++V +G H A+N L Sbjct: 257 VLDFGIEGGAVSA--AVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNALAATACALAA 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + +ALS F P +GR +R + + G +ID++YNANP S++AAI L+ + Sbjct: 315 GIAPEVIAQALSAFAPVKGRLQR-KPGHHGGL--VIDDTYNANPDSVRAAIDALATLP-- 369 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 R VLGDM E+G +FH ++ I V +G L + +A H+ Sbjct: 370 --APRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELTLHMVEAFGGGAR-HF 426 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 427 A-SAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 469 >gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] Length = 463 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 128/479 (26%), Positives = 215/479 (44%), Gaps = 35/479 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T ++L+ +G G G V + DSR I P + F A+ G DGHDF+ A Sbjct: 1 MLTLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V+ V + P+ V D + L LA R ++ ITGS+GK++T Sbjct: 61 RGAVAALVDRAHVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHL 181 KE++ S + S+NN IG+PL+L + D + + E+G ++ GEI L + Sbjct: 121 KEVVWSVASQRFRAIRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP I V+T ++ +HL+ +E IA+ KAE+ L + G LN DD L+ K Sbjct: 181 ARPTIGVVTNVSHSHLARMGSLEAIAATKAELPASLPEDGVAVLNGDDLRVRLMADKCRC 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHM 292 I+ +G + + + + + L G S +++ G +G H Sbjct: 241 RVIR----YGLAPDCEVRAENVESHG--------LDGISFDLLVDGGRHHVHVPLLGQHS 288 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +L + + L V+ + L + R G TLID++YNANP S Sbjct: 289 VHTVLAGVSVGLALGMSVEETLPGLRDPSIQ----LRLLVVPAIGGATLIDDTYNANPTS 344 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 AA+++L+++ RRIA GDM E+G + H + + + + ++ G Sbjct: 345 SLAALNLLAELPAR---RRIAAFGDMLELGSYEEEGHRIVGKRAAAV-VDRLFTMGPRAR 400 Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + D S V +T L ++ ++ +GDVV+VK S ++ L + Sbjct: 401 IIADEAVASGLAPDAVVAVDTKQDLIDALKETMREGDVVLVKGSRGIQLEHVVAALRDR 459 >gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] Length = 423 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 178/369 (48%), Gaps = 34/369 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 IDSR + P + F AIKG + DGHDF+ HA + GA +V D + +P + Sbjct: 15 IDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKD-TGFENQIIVP--NTVEF 71 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 LG L K V + K II ITGS GKT+TKE++ LSS + G+ N+ IG+PL Sbjct: 72 LGQLAKTIVE---KFKPKIIGITGSNGKTSTKEIVWSVLSSEISAFKNEGNLNSEIGLPL 128 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 ++ I E+ +G+I +L + P I V+ + AH+ +E I K Sbjct: 129 SIINSYRGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSAHVGVAGSVENIFKGKW 188 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 +I +E + +N+DD K + FG + D+ L K + + Sbjct: 189 QI---VENSKEALVNFDDERMRCTKCR----------YFG-TTGGDYILSKREYNGSSTI 234 Query: 272 MEVQLQGKSMEVVHHGIGY---HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +G+ E + GY MA + L+ GI ++ DV L+ + P +GR Sbjct: 235 LTFEYEGE--EFYYQLPGYWTKPMALSALVAFGIADMI--DVLFNPLNLANYKPLKGRFN 290 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +R ++G+ LID++YNA+ S KA I + + P R A++G M E+GE S + Sbjct: 291 VHR--FSKGY--LIDDTYNASYESFKAGIEEILENFPK---PRYAIVGAMKELGEYSTYY 343 Query: 389 HIDLAEVLS 397 H L+E+L Sbjct: 344 HKKLSELLE 352 >gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Alicycliphilus denitrificans BC] gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans K601] gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans BC] gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans K601] Length = 463 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 199/444 (44%), Gaps = 29/444 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++A + F A+KG +D + + A GA + + + A+ +P V Sbjct: 39 VHTDTRTLAAGDLFVALKGERFDANSLLPQARAAGAAAAIAHGALEAA----GLPGVEVP 94 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R + ++A+TGS GKTT +M+ L + K A G++NN + Sbjct: 95 DTLAALGVLAAGWRAQRTLPLVAVTGSNGKTTVTQMIASVLRAWKGDAALATQGNFNNDV 154 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLTL R+ + + ELGM+H GEI +L + RP +A++ HL +E +A Sbjct: 155 GLPLTLLRLRPAHEAAVVELGMNHPGEIAYLAGIARPTVALVNNAQREHLEFMHTVEAVA 214 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L G D+F L + + G +FG AD + Q Sbjct: 215 RENGSVLAALCAGGVAVFPAADAFTPLWRELA---GAHRCITFGGDA-ADVRCAH-AQWQ 269 Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + +W + VQ + + + G H N L A + + L+ F P +GR Sbjct: 270 DGAWHLRVQTPQGAFDTLLSIAGRHNVTNALAAAACALAAGAPLAAIARGLAAFEPVKGR 329 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + ++D+SYNANP S++AAI VL+++ G R+ VLGDM E+G Sbjct: 330 SRAFAVRCQGRAIAVVDDSYNANPDSVRAAIDVLAELP----GPRLLVLGDMGEVGGQGP 385 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVD 443 FH + I V F + AL S HV + E M L +++ L Sbjct: 386 QFHAEAGAHARSRGIEQV----FALGAL------SAHVAGARHFEDMASLIAAVRAQLPG 435 Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467 V+VK S R++ + EE Sbjct: 436 VGSVLVKGSRFMKMERVVQAIEEE 459 >gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] Length = 851 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/375 (30%), Positives = 167/375 (44%), Gaps = 38/375 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G + DSR F A++ DGH FI A+ GA VV S+ SI V Sbjct: 24 SGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQ--YAPSVIPASITVII 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 +D L L A A + +AITGSVGKT+TK + L+S S+N + Sbjct: 82 CNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLASRYSVLRSPRSFNADL 141 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ +T+A + + + E G H GEI L L P I ++T + AHL F IA Sbjct: 142 GLSVTMAELAAQ-QWAVLEFGADHPGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIA 200 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 KA I + L G LN DD + ++HA ++ +NA ++R Sbjct: 201 HEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRV------GQNAACEIR------ 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNM-LMTLGIVSILTADVDTAI------------ 314 W V +S + H I H + + L+ G+ S+ A A+ Sbjct: 249 ---WGNVTSTVQSTQFTIH-IPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSLAEMR 304 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 +AL+ P G R+ + + T+ID+++NA P S+ AA+ L + RRIA+ Sbjct: 305 EALADLRPAHG---RFNPLVGRNGATIIDDTFNAAPESVYAALQTLGSLPAR---RRIAI 358 Query: 375 LGDMCEMGELSQSFH 389 LGDM E+G S FH Sbjct: 359 LGDMAELGAASARFH 373 >gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] Length = 426 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/439 (27%), Positives = 210/439 (47%), Gaps = 28/439 (6%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 ++S+ + + F A+KG +DGHDFI A++ GA V+ V S +F V+ Sbjct: 11 LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD-----RIFLVESS 65 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + AL KLA T++ +TGS GKTTTKE+L L + + + G+ N G+PL Sbjct: 66 VDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 ++ + I E+ S G+I L + P IAV+ + AHL F E I K Sbjct: 126 SILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTRERIMETKM 185 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI + ++ T +DDS + KT++ FGK ++ D L+ W + Sbjct: 186 EIIKYSKENATAVTFFDDSDLRREVPRYR----KTLF-FGK-ESGDSVLKGWWYYEGSTI 239 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + +S+ V ++ Q N+ +L ++ L VD I L+ G R Sbjct: 240 AEFE-AFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPG---R 293 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +G ++D++YNA+P + + +I L + G++ AV+G M E+GE S+ FH Sbjct: 294 FNVREKEGVL-IVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +L + L++ + +V+LS +K + S+ + + + + + +GDVV+ Sbjct: 349 EELGKRLNVLDGVYVFLSEPEAEWIKS----EKIILKSDDPEDIAKDLAARVTEGDVVLF 404 Query: 450 KSSNSCGFYRLINLLLEEF 468 K+S + R++ + +E Sbjct: 405 KASRAVRIERVLEMFEKEL 423 >gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029] gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029] gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] Length = 447 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G +IDS+ + P + FFA+ G DGH F+ HA GA VV+ D S + + Sbjct: 26 ITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL + + T++ ITGSVGKTTTKE LSSI KT+A SYN+ Sbjct: 84 RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205 + VPL+L D D I E+G+S G ++ L +V+P IAVIT I H +F GI+E Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I K+ I L+K+ L D ++ L++ S K +SF ADF +K Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S S + +Q ++ + Y A N+L+ + + IL + I++L + Sbjct: 256 ISGDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R+ ++ G +I+++YNA P +M AA+ L P G+ I +LG M E+G Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367 Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 S+ H +AE + ++ I W+ VL S V + + + ++ Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 GDV+++K S + L+ Sbjct: 423 VARYGDVILLKGSRALALESLL 444 >gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Atopobium parvulum DSM 20469] gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Atopobium parvulum DSM 20469] Length = 478 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 173/361 (47%), Gaps = 24/361 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++ +TGSVGKTTTKEML + + ++ +A G++NN IG+PLT+ P D + + ELGM Sbjct: 116 VVGVTGSVGKTTTKEMLRRGIGATRRVHATAGNHNNLIGLPLTVLSTPEDTEVLVLELGM 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLN 226 +H GEI LT + RP +AVIT + +H+ + IA AKAEI G+ G+I + Sbjct: 176 NHAGEITRLTSVARPTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAFGSIEPTLIQ 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEV 283 + A A + + + D + E+ + G S V Sbjct: 236 ASAGDYTKFIADKFARPARVVCKTVGATEDDVMSAQKVILDEKGLPTATISASSGWSRTV 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TL 341 G + ++L+ L V L D+D A +A+ ++ R R ++ + Sbjct: 296 TLEVPGRVVVDDLLLALEAVETLGLDLDAAAEAI-----EQMPATRMRLSVLDATCGAKI 350 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID+SYNA+P S AA+ VL Q+ EGRRIA++G++ E+G + H + ++ N Sbjct: 351 IDDSYNASPNSTAAALDVLMQMP--AEGRRIALIGEIGELGPEEKRLHGYVGAYIAAKNP 408 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV-------DGDVVVVKSSNS 454 V G A ++ + + + +SE F + +L GDV++ K+S S Sbjct: 409 DFVAFVGTG--AAREMVEAARVMGFSEDKIEQFNDVNEALAVLGPVLKQGDVLLAKASRS 466 Query: 455 C 455 Sbjct: 467 A 467 >gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] Length = 447 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 30/442 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G +IDS+ + P + FFA+ G DGH F+ HA GA VV+ D S + + Sbjct: 26 ITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGD--SFGLELI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD AL + + T++ ITGSVGKTTTKE LSSI KT+A SYN+ Sbjct: 84 RVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTILSSIYKTHASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205 + VPL+L D D I E+G+S G ++ L +V+P IAVIT I H +F GI+E Sbjct: 144 LTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLRIVQPEIAVITHINDQHAMHFPQGIQE 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I K+ I L+K+ L D ++ L++ S K +SF ADF +K Sbjct: 204 ILKEKSYI---LQKSKLQLLPKDSPYYLDLRSCSPT-AEKFSFSFNDPL-ADF---CYKA 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S S + +Q ++ + Y A N+L+ + + IL + I++L + Sbjct: 256 ISGDSVV-IQTPEENY-CLPIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPEL---K 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R+ ++ G +I+++YNA P +M AA+ L P G+ I +LG M E+G Sbjct: 311 LPPMRFEHSMRNG-MQVINDAYNACPEAMIAALDALPL--PSDGGKIILILGHMAELGRY 367 Query: 385 SQSFHIDLAEVLS-----LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 S+ H +AE + ++ I W+ VL S V + + + ++ Sbjct: 368 SEEGHALVAEKAASRGDMIFFIGEKWIPVQSVLK-----SYSCEVSFFSSAQDVKDILKQ 422 Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461 GDV+++K S + L+ Sbjct: 423 VARYGDVILLKGSRALALESLL 444 >gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix cholodnii SP-6] gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix cholodnii SP-6] Length = 489 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 112/406 (27%), Positives = 177/406 (43%), Gaps = 23/406 (5%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+RS+ + F A++G +D HDF+ A GA + + AS +P V D L Sbjct: 37 DTRSLRAGDLFVALRGERFDAHDFLPQAQAAGAVAAIAERGLDAS----GMPGIEVPDSL 92 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVP 150 AL LA R +IA+TGS GKTT +M+ L + +A G++NNHIGVP Sbjct: 93 LALQALAAGWRAEHLLPVIAVTGSNGKTTVTQMIAAILRAWLGDAAHATAGNFNNHIGVP 152 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL + + ELGM+H GEI L + +P +A++ H +E +A Sbjct: 153 LTLLALHAGHRAAVVELGMNHPGEIAELARIAQPTVALVNNAQREHQEFMQTVEAVAREN 212 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 + L G DD + + + + + T AD ++ S Sbjct: 213 GCVISALPADGVAVFPADDDYTPIWRELAQPRRVLTFALAEAGVAADC-------VAQAS 265 Query: 271 WMEVQLQGK------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 W Q + S+++ G H +N L +D + L+ F + Sbjct: 266 WAGDHWQARFDTPAGSIDLALGVAGRHNVKNALAACACALAAGCPLDAVQRGLAGFAAVK 325 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + TL+D+SYNANP S++AAI VL+ + R +LGDM E+G+ Sbjct: 326 GRSQVSLLDWGGRQVTLVDDSYNANPDSVRAAIEVLAALP----APRWLLLGDMGEVGDQ 381 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 +FH ++ + + I H W +G A ++H + T+ Sbjct: 382 GPAFHAEVGTLAAQRGIDHFWTAGVLCADAARAYADAVHASHDATL 427 >gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Streptobacillus moniliformis DSM 12112] gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Streptobacillus moniliformis DSM 12112] Length = 405 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 115/419 (27%), Positives = 189/419 (45%), Gaps = 67/419 (15%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L T +L+ G I + + F +SI+S+ P FFAI G+D+ A Sbjct: 1 MNKLNTLEELI----GKKIFSLKEDF--KVSINSKEATPNSVFFAINK----GNDYAKEA 50 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++ ++ G V+D + + + A R +K +I ITGS GKT Sbjct: 51 ESMGAFVIYDKKELDIHNGHY------VEDSVKFMQEFARRYRKNNKFIVIGITGSNGKT 104 Query: 121 TTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T K++L LS+ + Y G+YNNHIG+P T+ + + E+GMS+LGEI L Sbjct: 105 TVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEILLLEMGMSNLGEIDLLG 164 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ +P ++IT I +HL +E + AK EI K + +N D F L Sbjct: 165 YIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPHTSK--KVVVNGKDEFLSKLD--- 219 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+ + E ++ L G H+ + + ++L Sbjct: 220 ---GVIKV--------------------ETKDIKTNLLGD-----HNLLNVSIVDSLLKY 251 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +G + +++ +G R + +G +T I+++YNA+P SMKA++ Sbjct: 252 MGFDDLCYENIELT----------DG-----RFQIVKGKYTYINDAYNASPISMKASLET 296 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S+I E +I LGDM E+G + +H DL+ VL N ++L G + L + L Sbjct: 297 FSKIC--NESFKIIALGDMLELGSDEKKYHEDLSYVLRETNFDRLFLYGKRMKYLYEKL 353 >gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans] Length = 371 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/319 (31%), Positives = 148/319 (46%), Gaps = 16/319 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVP 150 AL ++A R + +I +TGS GKTT KEM+ L + A G++NN IGVP Sbjct: 2 ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVP 61 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL R+ + ELGM+H GEI L+ + +P + ++ H +E +A Sbjct: 62 LTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQEN 121 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 + L G DD+F L +S+A KT+ +FG S +AD + Sbjct: 122 GAVLASLPADGVAVFPADDAFTPLW--RSYAAQRKTL-TFGFSADADVRCTYAANVFGND 178 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 M V + + G H +N L + + + ++ L F P GR +R Sbjct: 179 -MSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQRK 237 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFH 389 A +ID++YNANP S++AAI VL+Q+ SP RI VLGDM E+G + +H Sbjct: 238 LAASGA---LVIDDTYNANPDSVRAAIDVLAQMASP-----RILVLGDMGEVGNDGRQYH 289 Query: 390 IDLAEVLSLYNISHVWLSG 408 ++ I HV G Sbjct: 290 EEIGAYARANGIEHVLALG 308 >gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga petrophila RKU-1] gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga petrophila RKU-1] Length = 426 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 120/439 (27%), Positives = 206/439 (46%), Gaps = 28/439 (6%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 ++S+ + + F A+KG +DGHDFI A++ GA V+ V S +F V+ Sbjct: 11 LNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD-----RIFLVESS 65 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + AL KLA T++ ITGS GKTTTKE+L L + + + G+ N G+PL Sbjct: 66 VDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 ++ + + E+ S G+I L + P +AV+ + AHL F E I K Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTRERIMETKM 185 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI + ++ T +DD + KT++ FGK + D L+ W + Sbjct: 186 EIIKHSKENATAVTLFDDPDLR----REVPCYRKTLF-FGK-EGGDSVLKDWWYYEGSTI 239 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + V G ++ Q N+ +L ++ L VD I L+ GR Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPGRFN- 295 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + ++D++YNA+P + + +I L + GRR AV+G M E+GE S+ FH Sbjct: 296 ---VREKKDVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +L E L++ + +++LS +K + I + S+ + + + S + +GDVV+ Sbjct: 349 EELGERLNVLDGVYIFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLASRVTEGDVVLF 404 Query: 450 KSSNSCGFYRLINLLLEEF 468 K+S + +++ + +E Sbjct: 405 KASRAVRIEKVLEMFEKEL 423 >gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia farcinica IFM 10152] gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia farcinica IFM 10152] Length = 499 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 135/474 (28%), Positives = 205/474 (43%), Gaps = 49/474 (10%) Query: 23 PQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVV 70 P+ V G + DSR I + F A+ G DGHD+ AV G VVV Sbjct: 23 PEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAAAAVAAGAAAVLAARPVGVPAVVV 82 Query: 71 NTDMVASIGSLSIPVFGVDDVLG-------------ALNKLAVAARLRSKATIIAITGSV 117 S+ + S+ + D G ++ +L+ A L T++ +TGS Sbjct: 83 EPRRC-SVPATSMALAHDADGSGAAVLAALAALARASVERLSAAGGL----TVVGVTGSS 137 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L+ + A GS+NN +G P T R D F + E+ +G I Sbjct: 138 GKTSTKDLLAAVLAPLGPVVAPPGSFNNELGHPWTALRATADTRFLVLEMSARGVGHIAA 197 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P I V+ + AHL F E IA AK E+ E L G LN DD + A Sbjct: 198 LAEVAPPRIGVVLNVGTAHLGEFGSREAIARAKGELVEALPADGLAILNADDPNVAAMAA 257 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQN 295 ++ + G S +AD++ + + EQ+ L S E+ G H N Sbjct: 258 RT----AARVVRVGLSGDADYRASEVR-LDEQARATFTLHTPAGSTEIRLGVHGEHQVGN 312 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + S AD+ T ALS R R + T++++SYNANP S++A Sbjct: 313 ALAAAAVASECGADLATVAAALSGARAVSERRMDVRTTADG--VTVVNDSYNANPDSVRA 370 Query: 356 AISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408 A+ L +S GE R AVLG+M E+GE S H + + ++ + + G Sbjct: 371 ALKALVTMSRAGERPRRSWAVLGEMAELGEESVLEHDGIGRLAVRLDVDRLVVVGTGRPS 430 Query: 409 --FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 H A+ + V + +D + + GDVV+VK+S S G + + Sbjct: 431 RAMHQGAVMEGSWGEESVLVPD-IDAAVALLDREVEPGDVVLVKASKSVGLWEV 483 >gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] Length = 426 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 28/439 (6%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 ++S+ + + F A+KG +DGHDFI A++ GA ++ V S +F V+ Sbjct: 11 LNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSD-----RIFLVESS 65 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + L KLA T++ +TGS GKTTTKE+L L + + + G+ N G+PL Sbjct: 66 VDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 ++ + + E+ S G+I L + P +AV+ + AHL F E I K Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKM 185 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI + ++ T +DD + KT++ FGK + D L+ W + Sbjct: 186 EIIKHSKENATAVTLFDDPDLR----REVPCYRKTLF-FGK-EGGDSVLKDWWYYEGSTI 239 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + V G ++ Q N+ +L ++ L VD I L+ G R Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRALGETVD--IFDLASLKTVPG---R 293 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +G ++D++YNA+P + + +I L + GRR AV+G M E+GE S+ FH Sbjct: 294 FNVREKKGVL-IVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGERSKEFH 348 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +L E L++ + +++LS +K + I + S+ + + + S + +GDVV+ Sbjct: 349 EELGERLNVLDGVYIFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLASRVTEGDVVLF 404 Query: 450 KSSNSCGFYRLINLLLEEF 468 K+S + +++ + +E Sbjct: 405 KASRAVRIEKVLEMFEKEL 423 >gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum MopnTet14] Length = 450 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 207/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV D S + +F Sbjct: 25 VTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGP--SYGLQLF 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D +L + + +I ITGSVGKTTTK LSS K +A SYN+ Sbjct: 83 HVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKVFASPKSYNSQ 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204 + +PL++ D DF + E+G+S G ++ L ++ P I VIT I H NF G + Sbjct: 143 LTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEPTIGVITHIDVQHAMNFLDKGAK 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263 I K+ + LE+ G L D S+F K+ +SF ++ +DF R Sbjct: 203 GIVEEKSLL---LERCGLQLLPKDSSWFPFFMKKNST---AEQFSFSMNNETSDFYYRAI 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD-------TAIKA 316 S+ + + VV +M N L+ + + + +D + I Sbjct: 257 H--SDGVLISAPDGDIELPVVFPYSPAYM--NFLVAVALAWLTNVPMDRLEQVSPSLILP 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F +E G R +I+++YNA+P SM AA+ + + P G G+R+ +LG Sbjct: 313 SMRFEQQEYNGIR-----------VINDAYNASPDSMLAALDAVP-VPPEG-GKRVFILG 359 Query: 377 DMCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMDGL 433 M E+G+ S H+ +A V + + + F V ++DA + + + +++ + Sbjct: 360 HMAELGKYSNECHVAVARKAVTKAHVVVFIGEKWFPVRDVVRDA---NCQIEFYGSVNEI 416 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 ++S + GDVV++K S S L+ Sbjct: 417 MHVVKSLVRQGDVVLLKGSRSLELETLL 444 >gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium kansasii ATCC 12478] Length = 524 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 130/491 (26%), Positives = 204/491 (41%), Gaps = 74/491 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVNTDMVASI 78 + DSR+I P F A+ G H DGHD+ A G +VV + + Sbjct: 34 VEFDSRAIGPGGLFLALPGAHVDGHDYAASAAAAGAVAVLAARPVGVPAIVVTPERSLAE 93 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130 G+L+ + D GA A+A ++ A TII ITGS GKT+TK+++ L Sbjct: 94 GALAGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVL 153 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + A GS+NN +G P T+ R D D+ I E+ H G I L + P I V+ Sbjct: 154 QPLGVVVAPPGSFNNELGHPWTVLRAGRDTDYLILEMSARHPGNIAALAQIATPAIGVVL 213 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F E IA K+E+ + + ++G + LN DD + + A + Sbjct: 214 NVGTAHLGEFGSREAIARTKSELPQAVPQSGVVILNADDPAVAAMAEVTAA----RVVRV 269 Query: 251 GKSKNADFQLRKWK-QCSEQSWMEVQLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305 + D W S Q G + V G+ G H N L + Sbjct: 270 SRGSTGDV----WAGPVSLDELARPQFTVHAGATQAEVRLGVYGDHQVSNALCAAAVALE 325 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A +D AL P R + T+ID++YNANP SM A + L+ I+ Sbjct: 326 CGATLDQVATALGGAGPVS--RHRMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIAR 383 Query: 366 HGEG---------RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 G G R AVLG+M E+G + + H + + ++S + + G Sbjct: 384 GGSGAGSDLAAKRRSWAVLGEMAELGADAIAEHDRVGRLAVRLDVSRLVVVGTG------ 437 Query: 417 ALPRSIH-VHYSETMDGLF---------------------LFIQSSLVDGDVVVVKSSNS 454 RS+ +H+ ++G + +++ + GDV+++K+SNS Sbjct: 438 ---RSVSAMHHGAVLEGAWGSWGAGADRGTVNVADADAALELLRAEVQPGDVILIKASNS 494 Query: 455 CGFYRLINLLL 465 G L + L+ Sbjct: 495 AGLGALADALV 505 >gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] Length = 426 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 185/383 (48%), Gaps = 38/383 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR I FFAI +G+ +I +++GA LV+ + V V+ Sbjct: 23 VVMDSRKIEKDSLFFAIN----NGNKYIDEVLERGATLVIAD-----DYSGDDSRVIVVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + A+ LA R +IAITGS GKTTTK+M+ LS + G+YNNHIG+ Sbjct: 74 DTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQKYRCKKTEGNYNNHIGL 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ ++ + + E+GMS GEI L + +P A+IT I +HL E + A Sbjct: 134 PFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTRENVFKA 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI + + I DD + + L GI + G KN ++ +K E Sbjct: 194 KGEIIKYVVSENLIIFG-DDYYLKNLS------GI----TVGYEKNCKKRIENFKDTDE- 241 Query: 270 SWMEVQLQGKSMEV----VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +E L+G + ++ H+ I MA + M+L + S ++ L++ P Sbjct: 242 -GIEFSLEGNNYKINLNGKHNCINGAMAVVVGMSLDLTS---EEIQKGFDNLNL-TP--- 293 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R++ + +G I+++YNA+P SM+ ++ ++ + + +IAVLGDM E+G+ Sbjct: 294 --MRFQKIV-KGETLYINDAYNASPISMRYSLETFDKL--YNDRTKIAVLGDMLELGDKE 348 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 FH ++ + + +++ G Sbjct: 349 IEFHREIIKKALDIKVDRIYIYG 371 >gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria AMMD] gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia ambifaria AMMD] Length = 468 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF L V Sbjct: 7 GEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + A L++PV + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 66 AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN IGVPLTL R+ + ELGM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIWRVAATGNPI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + Q+ E + + ++ V +G H A+N L Sbjct: 243 LDFALHDGERQVEAQVTGRLHGGE---LAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 ++ + L F P +GR + + + T++D++YNANP SM+AAI VL +Q Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +P R+ V+GDM E+G+ +FH ++ Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia ambifaria MEX-5] gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia ambifaria MEX-5] Length = 468 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 25/390 (6%) Query: 16 GHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 G + ++P V+G +S DSR++ P + F A+KG +D HDF L V Sbjct: 7 GEAARLIPGAAVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDF-LGDVAARGAA 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + A L++PV + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 66 AALVAHVPA---GLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIA 122 Query: 128 ---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 A A G+ NN IGVPLTL R+ + ELGM+H GE L L P Sbjct: 123 SIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGETEILARLAAP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ H + +E +A A + L G DD++ + + + I Sbjct: 183 TVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYAGIWRVAATGNPI 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + Q+ E + + ++ V +G H A+N L Sbjct: 243 LDFALHDAERQVEAQVTGRLHGGE---LAIDTPSGAVTVRLRALGEHNARNALAAAAAAL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQ 362 ++ + L F P +GR + + + T++D++YNANP SM+AAI VL +Q Sbjct: 300 AAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMRAAIDVLAAQ 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +P R+ V+GDM E+G+ +FH ++ Sbjct: 360 PAP-----RVLVIGDMGEVGDEGPAFHREI 384 >gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium Ant39E11] Length = 364 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 49/391 (12%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ V + L +L +LA A R+ T+I +TGS GKTT KE+ LS +A G++N Sbjct: 12 VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDGNFN 71 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+PLTL + + + E+G +H GEI LT + P I IT AHL F G++ Sbjct: 72 NHIGLPLTLVGLKKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITNFGQAHLEGFGGVD 131 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + K E+++ L G L D ++ A ++ L Sbjct: 132 GVIQGKIELYQWLTSHGKPSLVNDSDPLQIEHAGNNKL---------------------- 169 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV---------DTAI- 314 S +V Q K + VH IG AQ+ L+ L A V D AI Sbjct: 170 ----PSSKDVVCQSKD-QGVHVTIGDTRAQSHLVGDFHSGSLVASVNLGRYMGMADEAIA 224 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 K + + P RG+ N+ F ++YNANP+SM+A++ + + P E + + Sbjct: 225 KGIEAYIPSNNRGQWLTTDSNRIFL----DAYNANPSSMEASLLAVHALHP--ELPHVYI 278 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGL 433 GD+ EMG +S H + +++ N+ V L G LA K PR++ V + T D L Sbjct: 279 AGDIFEMGSHEKSAHQSMVDLMQTLNLKTVHLVG---LAFGKAQAPRTM-VKHDNTKDAL 334 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 F +S+ V G +V +K+S L+ L Sbjct: 335 AYF-KSNPVRGAMVWIKASRGMALEGLLEAL 364 >gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila felis Fe/C-56] gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila felis Fe/C-56] Length = 448 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 212/444 (47%), Gaps = 31/444 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 26 ISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQAAQAGAVAAVVSKDYCGD--SFGLDLV 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 84 VVQDTTEALKEAGENQGHLFQGTIVGITGSIGKTTTKTFAKTFLSSVYRVYASPKSYNSQ 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF--SGIE 204 + VPL+L D DF I E+G+S G +R L +V P I+VIT IA H NF G+ Sbjct: 144 LTVPLSLLMADGDEDFIILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVR 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA K+ I + T I L DS + K K ++F ++ ADF +K Sbjct: 204 GIAEEKSHILQ----TSRIQLLPKDSPWYSHFIKQSPSSEKFSFAF-YNETADFY---YK 255 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + S + +G V Y A N+L++ + +L VD I + S Sbjct: 256 AIQKDSVIISTPEGDVDFAV--SFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLP 313 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+ ++ G +I+++YNA P +M AA+ + +P G+ I +LG M E+G Sbjct: 314 P---MRFELSMRNG-IQVINDAYNACPEAMIAALDAIP--NPSEGGKVILILGHMAELGN 367 Query: 384 LSQSFHIDLA-EVLSLYN----ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 S+ H +A + LS N I WLS H+L S V + + + ++ Sbjct: 368 YSEEGHAIVANKALSKANIIFFIGEKWLSSQHLLK-----SSSCEVSFYPSAQSVEEILK 422 Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462 S + GD+V++K S + L++ Sbjct: 423 SVVQQGDIVLLKGSRALALESLLS 446 >gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 503 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 120/451 (26%), Positives = 198/451 (43%), Gaps = 35/451 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++ + F A++G +D ++F+ A GA + + + + G +P V Sbjct: 39 VHTDTRTLQAGDLFVALRGERFDANEFLAQARAGGAAAALAHPGRLEAAG---LPGIEVP 95 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R R +I +TGS GKTT +M L + K +A G++NN I Sbjct: 96 DTLAALGALAAGWRARLDLPLIGVTGSNGKTTVTQMTAAVLRAWKGDAAFATQGNFNNDI 155 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL L R+ + + ELGM+H GEI L + +P +A++ HL + +A Sbjct: 156 GVPLMLLRLRAAHEAAVIELGMNHPGEIAVLAGIAQPTVALVNNAQREHLEFMHTVRAVA 215 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L G DD++ L + + G + +FG + +R C+ Sbjct: 216 EENGSVISALPAGGVAVFPADDAYAPLWRGLA---GARRCLAFGMEPGSAAGVR----CT 268 Query: 268 EQSW--------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 W ++ L G V G H N L A +D + L+ Sbjct: 269 RAHWEAGAWNVHIDTPLGGFDGTV--RIAGRHNVANALAATACALAAGAPLDAIARGLAA 326 Query: 320 FHPKEGRGKRYRCALNQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 F P +GR + + A+ Q T +D++YNANP SM AAI VL ++ G R+ V Sbjct: 327 FEPVKGRSRAFTAAVPQPGGGSRRITAVDDTYNANPDSMHAAIDVLGELP----GPRLLV 382 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGL 433 +GDM E+G+ FH + I ++ L + A++ P++ H + M L Sbjct: 383 MGDMGEVGDQGPQFHAEAGSHARDRGIERLFALGALGIHAVQAFGPQARHF---DDMASL 439 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + V+VK S +++ L Sbjct: 440 LAAVREAAPSAGSVLVKGSRFMKMEQVVQAL 470 >gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] Length = 956 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 204/450 (45%), Gaps = 32/450 (7%) Query: 23 PQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 P G+ N +SIDSRSI P F AIKG YDGH ++ ++ + + Sbjct: 527 PNGYQETYSYNYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLN 586 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S + V++ L + + A IA+TGS GKTT KE++ L S Sbjct: 587 QFSEENSYYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVL 646 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 + + NN IG+ T+ R+ + + IFELG +H GEI L + P I +I I P+HL Sbjct: 647 KTLANENNIIGLCKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGIILNIGPSHL 706 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F E + K +F+ DD F+ L + GI S G ++N+D Sbjct: 707 EYFGDEEGVFREKITLFK--RPLALRLYPGDDFRFDYLANE----GI----SIGYNENSD 756 Query: 258 FQLRKWKQCSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 +++ + K C++ + ++ L H+ I A + + LGI D + Sbjct: 757 YRITRHK-CNKDNQSFYLNEDLWFLPYGAPHYAINSAFAIVLGLKLGI------DKEKMQ 809 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL+ E R + + +G LI + YNANP SM+ A+ +++P E A+ Sbjct: 810 TALNKPIQLELRNQVEK----RGTGLLILDCYNANPYSMQKALEYWQELNP--EQPHYAI 863 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+GE S +H ++ +L+ ++ G + I HY+ + + Sbjct: 864 LGDMLELGESSILYHQMISAMLAEMRYEKLYTVGNYSRIYHPEKESPI-FHYNTVEELIA 922 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +SL + +++VK S++ R+I +L Sbjct: 923 DRKLNSLPENAIILVKGSHAIQLERVIPIL 952 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 104/401 (25%), Positives = 167/401 (41%), Gaps = 50/401 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 ++ + +L A+Q HS+ + + + + D+R I P + F I+G ++DGH+FI Sbjct: 6 IFVINRILYALQQHSLLVETANLAKLENWQGKVQTDNRKIKPGDIFVCIQGANFDGHNFI 65 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 A++KGA ++V I IP V D A +A L K T+I ITG Sbjct: 66 NSALEKGAAIIVCR-----EINKRDIPYIKVKDTRKAAAVIARTVMLPQKIPYTLIGITG 120 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVD--------------- 159 + GKTTT +L AL ++ IG+ +I G R D Sbjct: 121 TNGKTTTSLLLYEALRNLGFRCGWIGTLGYYIEGKAFPSERTTPDIIELNEIFGQMIEAK 180 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 VD+ + E+ L R + V+ + + + HL +E AK FE K Sbjct: 181 VDYVVMEVSSHSLSLDRI--YGVKFDYCLFSNLGRDHLDFHQTLENYGKAKMSFFEQGAK 238 Query: 220 TGTI-FLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 G+I +N D+F ++LK K +YS G +A+FQ K S ++ Sbjct: 239 DGSISVINTADAFGVQIKDMLKEKQ-----AKVYSLG-GNDAEFQYSDIKTDINTSSFKL 292 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + + V IG QN+ +T+ + L + +L P +GR +R Sbjct: 293 IAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSPEAIHNSLKDIPPVQGRLERVENNF 352 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 N G F ID Y P ++ + + + PH +RI L Sbjct: 353 NIGIF--ID--YAHTPEAIDNVLKAVEDL-PH---KRILCL 385 >gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] Length = 478 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 110/401 (27%), Positives = 183/401 (45%), Gaps = 33/401 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88 + DSR +AP + F I+G +DGHDF V++GA +++ D S + + V Sbjct: 29 VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAERDPFNGECPSADVTIMVV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D + AL +LA R+RSKA ++ +TG+ GKTT KE+L L T + NN IG Sbjct: 89 GDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL++ + F + E G+S ++ L ++RP I ++ + H++ G +A Sbjct: 149 LPLSMLEATGNESFWVMEAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGL-GDRGVAY 207 Query: 209 AKAEIFEGLEKTGT--IFLNYDD---------SFFELLKAKSHALGIKTIYS--FGKSKN 255 K+ + L + GT + +YDD + A +G + Y + Sbjct: 208 YKSRLLAHLAEGGTGLVCADYDDLVREARSVCRRLQFFSASGRGVGYRAAYDGPVADAAG 267 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI--LTADVDTA 313 +D +R V L G EVV G A+N+ + L+ + A Sbjct: 268 SDGGVR--------GRYRVWLDGSVHEVVAPFRGAFGAENVAAVAAAAHLCGLSGEEIAA 319 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 A +V P++ R+ CA G F ID++YNANP S + +++++ G + Sbjct: 320 GLAEAVL-PRQ----RFACA-TVGGFVCIDDTYNANPLSSARMVEAVTEMAAGGP--LVF 371 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 VLG+M E+GE + H L L+ V+ G + A+ Sbjct: 372 VLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAV 412 >gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA2] gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL044PA1] gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA3] gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp. P08] Length = 485 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 111/388 (28%), Positives = 170/388 (43%), Gaps = 35/388 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + ID+R + P + A+ G DGHDF A GA V+ A + P VD Sbjct: 28 VVIDTRKVTPGALYIALPGARVDGHDFTQAAQDAGAAAVLTTRSTDAQV-----PHLIVD 82 Query: 90 DVLGALNKLA--VAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L++LA V A R + + IA+TGS GKT+TK+ML L + T A +GS+NN Sbjct: 83 DGRAGLSRLARHVVATERERGMLTIALTGSSGKTSTKDMLAQILETFGPTVAPVGSFNNE 142 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG PLT R D F + E+G LG I +LT +V P +A++ + AHL F E I Sbjct: 143 IGAPLTACRSNEDTSFLVSEMGARGLGHISWLTSIVPPDVAMVLNVGIAHLGEFGSREVI 202 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A AK EI L G LN D+ + +++H I + D ++ W + Sbjct: 203 AQAKGEIVGALAPDGWAVLNAADNLIAGMASRTHGH-IAWFSPDADHRRPDAEIEAWAES 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT-----------------AD 309 ++ ++ + G + + L T+G + D Sbjct: 262 IHAD--DLDRHSFTLAARYGGTTWRSPVS-LTTMGAHQVANAVAATAAALAALAMNDGTD 318 Query: 310 VDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----- 363 T I+ R R + L+++ YNANP SM A+++ + + Sbjct: 319 EQTVIQIAGALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSMAASLAAMGHVLAARR 378 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHID 391 + + R +AVLGDM E+G S + + Sbjct: 379 ARDPQTRGVAVLGDMLELGADSARLNAE 406 >gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] Length = 470 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 127/475 (26%), Positives = 208/475 (43%), Gaps = 49/475 (10%) Query: 21 IVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 ++P V+G +S DSR+ P + F A+KG +D HDF+ V+ Sbjct: 11 VIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNVSAVLATR 70 Query: 73 DMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + +P V D AL LA R R ++A+TGS GKTT KEM++ + Sbjct: 71 ----TPDNFEVPALRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTVKEMISSIFA 126 Query: 132 SI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A G++NN +G+PLTL R+ + ELGM+H GE L + P +AV Sbjct: 127 AAVGEASRLATAGNFNNDVGLPLTLFRLNETHKLAVVELGMNHPGETALLGKIAEPTVAV 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + H + +E +A A + L+ G +D++ GI + Sbjct: 187 VNNAQREHQEFMATVEAVALEHAAVIHALKPEGVAVFPANDAY----------AGIWRVA 236 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---------EVVHHGIGYHMAQNMLMT 299 + G ++ DF L + +E + ++ L+G + +V +G H A N L Sbjct: 237 ATG-NRIIDFALNTAEHTTEAA-VKGSLEGSELSIDTAEGHVDVTLQVLGAHNAHNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358 +D + L F +GR + R L T+ID++YNANP SM AAI Sbjct: 295 TAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNANPDSMLAAID 354 Query: 359 VL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL ++ SP R+ V+GDM E+G+ FH ++ I ++ G A +DA Sbjct: 355 VLAARPSP-----RVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALG---EASRDA 406 Query: 418 LPR-SIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 H+ + ++ L + Q++ +VK S R+++ + PA Sbjct: 407 CAAYGDEAHHCDDVEALVAHLKQAAYGAAATYLVKGSRFMKMERVVDAVTSPQPA 461 >gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL N1-067] Length = 316 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 2/206 (0%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I P + F G DGH+F+ A + GA ++ PV Sbjct: 28 ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA+ + +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 86 LVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ +EI Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF 232 A AK EI GL +G + Y+++ Sbjct: 206 AKAKLEITAGLNPSGILIYPYEETLL 231 >gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. Spyr1] gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. Spyr1] Length = 501 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 127/479 (26%), Positives = 203/479 (42%), Gaps = 56/479 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFG 87 + DSR++ F A+ G DGHDF AV G A L + A + P G Sbjct: 31 VEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAARPVGVPAVVVDPVAPQHG 90 Query: 88 VDDVLGALNKLAVAARLRSKA------------------TIIAITGSVGKTTTKEMLTIA 129 G L A + A TI+ ITGS GKT+TK+++ Sbjct: 91 AGGTAGVLEHDADGSGAAVLAALARLAAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAV 150 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L+ + + A GS+NN +G P T+ R D+ + E+ H G I L + P I + Sbjct: 151 LAPLGEVIAPPGSFNNELGHPWTVLRATESTDYLVLEMSARHPGNIAALARIAPPSIGAV 210 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AHL F E IA+ K+E+ + + ++G + LN DD + K+ A + Sbjct: 211 LNVGTAHLGEFGSREAIAATKSELPQAVPQSGVVILNADDPVVAAMADKTAA----RVVR 266 Query: 250 FGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 G+S +A + + + + G+ + V G H N L+ + Sbjct: 267 VGRSADARTLDVRADGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALE 326 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A + AL+ P R + + T+I+++YNANP SM A + L+ +S Sbjct: 327 CGATLTQVAGALAAAGPVS--RHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSR 384 Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 P G R AVLG+M E+GE + + H + + ++S + + G P S Sbjct: 385 QNPEGS-RSFAVLGEMAELGEDTITEHDRIGRLAVRLDVSRLVVVG-------SGRPMSA 436 Query: 423 HVHYSETMDGLF--------------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +H + M+G + ++ L GDVV+VK+SNS G L + L+ E Sbjct: 437 MLHGA-VMEGSWGSEATPVADADAALALLRDELRPGDVVLVKASNSAGLGALADALVSE 494 >gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium gilvum PYR-GCK] gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 504 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 127/479 (26%), Positives = 203/479 (42%), Gaps = 56/479 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFG 87 + DSR++ F A+ G DGHDF AV G A L + A + P G Sbjct: 34 VEFDSRAVTAGGLFLALPGARSDGHDFAATAVASGAVAVLAARPVGVPAVVVDPVAPQHG 93 Query: 88 VDDVLGALNKLAVAARLRSKA------------------TIIAITGSVGKTTTKEMLTIA 129 G L A + A TI+ ITGS GKT+TK+++ Sbjct: 94 AGGTAGVLEHDADGSGAAVLAALARLAAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAV 153 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L+ + + A GS+NN +G P T+ R D+ + E+ H G I L + P I + Sbjct: 154 LAPLGEVIAPPGSFNNELGHPWTVLRATESTDYLVLEMSARHPGNIAALARIAPPSIGAV 213 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AHL F E IA+ K+E+ + + ++G + LN DD + K+ A + Sbjct: 214 LNVGTAHLGEFGSREAIAATKSELPQAVPQSGVVILNADDPVVAAMADKTAA----RVVR 269 Query: 250 FGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 G+S +A + + + + G+ + V G H N L+ + Sbjct: 270 VGRSADARTLDVRADGVTLDPLARPAFTLHAGGEQVPVTLAVHGDHQVSNALVAAAVALE 329 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A + AL+ P R + + T+I+++YNANP SM A + L+ +S Sbjct: 330 CGATLTQVAGALAAAGPVS--RHRMQVSTRSDGVTVINDAYNANPDSMTAGLKALAWMSR 387 Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 P G R AVLG+M E+GE + + H + + ++S + + G P S Sbjct: 388 QNPEGS-RSFAVLGEMAELGEDTITEHDRIGRLAVRLDVSRLVVVG-------SGRPMSA 439 Query: 423 HVHYSETMDGLF--------------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +H + M+G + ++ L GDVV+VK+SNS G L + L+ E Sbjct: 440 MLHGA-VMEGSWGSEATPVADADAALALLRDELRPGDVVLVKASNSAGLGALADALVSE 497 >gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 487 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 128/464 (27%), Positives = 192/464 (41%), Gaps = 36/464 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-----------QKGAGLVVVNTDMVASI 78 + DSR + F A+ G DGHDF AV + A V+V Sbjct: 30 VEFDSRKVTDGGLFVALPGERADGHDFAASAVAAGAAGVLAAREVDAPAVIVPPLPPGQA 89 Query: 79 GSLSIPVFGVDDVLGALNKLA-------VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130 S+ + G D GA A V RL T++ +TGS GKT+TK+++ L Sbjct: 90 HERSVALAGDTDGSGAAVLAALAALARHVVTRLSETGLTVVGVTGSSGKTSTKDLIAQLL 149 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + T A GS+NN +G P T R + EL G I L + P I V+ Sbjct: 150 EPLGPTVAPPGSFNNELGHPWTALRADRKTRHLVLELSARGPGHIAELAAVAPPRIGVVL 209 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH+ F E IA K E+ E L G LN DD F + ++ A + Sbjct: 210 NVGSAHVGEFGSQEGIARTKGELVEALPAEGVAVLNVDDPFVAEMAQRTSA----RVVGV 265 Query: 251 GKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G+S AD + + ++ ++ G+ EV +G H N L + L Sbjct: 266 GESPKADVRAENVRLDEHARASFDLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMP 325 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + LS + R R T++++SYNANP SM+AA+ L+ ++ Sbjct: 326 LSEVAAGLSAATRRSER--RMEVTTRSDGVTVLNDSYNANPESMRAALKTLASMT--SSR 381 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R AVLG M E+G S S H ++ + NI+ + + G A+ S + E Sbjct: 382 RSWAVLGVMSELGADSVSAHDEIGRLAVRLNINRLVVVGEQAAAMHRGA--SHEGSWGEE 439 Query: 430 ------MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 D ++ L DVV+VK+S +R+ + LLEE Sbjct: 440 SVLVPDTDAAVALLREQLRPNDVVLVKASKVAELWRVADALLEE 483 >gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] Length = 422 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/452 (26%), Positives = 201/452 (44%), Gaps = 57/452 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFGV 88 +DSR + P F AIKG DGH + A+ KGA VV + IP + V Sbjct: 9 VDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKL------QHIPEEKLITV 62 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D + L A + +I ITGS GKTTTKE+L L + + G+ N IG Sbjct: 63 NDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK-DRAFRNPGNLNTEIG 121 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL++ F I E+ M+ G+I L + PH+A++ + AH E I Sbjct: 122 LPLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTAHRGIAGNQEMILR 181 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-- 266 K ++ E ++K GT + YD + + +K + +FG K D+QL + C Sbjct: 182 GKLQLIENMQKNGTAIVLYDKKLLD-------RISLKPMVTFG-YKKGDYQLVDY--CYI 231 Query: 267 --SEQSWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S +++ + QL + + G N+ L + IL D + I L F Sbjct: 232 DFSTKAFYKTPREQLIFNLKSIWNAG----QLTNISAVLAALDILGIDCNKNI--LENFT 285 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P GR + C G + ++D++YNA+ S + A+ + ++ R AV+G + E Sbjct: 286 PVAGRFRVMNC---NGIY-VVDDTYNASIESFETAVETIKKLGK----RSFAVVGSIKEQ 337 Query: 382 GELSQSFHIDLAEVLS------LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 G+ S H L E+L +YN+ + + + S + S + + Sbjct: 338 GKYSIETHRKLGEILEKLDGVVVYNVDNEI----------EIMNCSKKIFASNSATEISD 387 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 F++ L+ GDVV+ K+S S +++ + EE Sbjct: 388 FLKRILIPGDVVLFKASRSVQIEKVLQIYTEE 419 >gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL S4-171] Length = 309 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 7/231 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I P + F G DGH+F+ A + GA ++ PV Sbjct: 28 ITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA+ + +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 86 LVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH 145 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ +EI Sbjct: 146 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEI 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 A AK EI GL +G + Y+++ S G +FGKS ++ Sbjct: 206 AKAKLEITAGLNPSGILIYPYEETLL-----LSQIDGDFRQLTFGKSTESE 251 >gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] Length = 430 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 34/377 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----------DM 74 GF N ++ DSR++ P F ++G DGH +I A+Q+GA V+ + + Sbjct: 25 GF-NSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHI 83 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSI 133 + V+ L AL A A R + I +TGS GKTTTKE+L + Sbjct: 84 LVLCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASIFAQK 143 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 +T G+ N+ G+PL++ + + + GIFELGM+ GEI L +++P+IAVIT I Sbjct: 144 YRTVKNEGNLNSETGLPLSVFTITKEHEVGIFELGMNRKGEIAELAAVLKPNIAVITNIG 203 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AH+ + IA K IF ++T F+ D + E L+ H I ++ Sbjct: 204 TAHIGMLGSKDAIAQEKKHIFSCFDETSVGFVPAQDKYAEFLQDVPHG----KIVTYSAD 259 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312 +A + L S E++ +G E +H + G H N + + + + Sbjct: 260 PDA-YTLEGL------SGAEIRYKG---ETIHLPLPGKHNVHNAFAAIAVAEYCKIPLQS 309 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + GR + R G T + + YNANP SM A +++ + I G++I Sbjct: 310 IKAGIEQMQALFGRSQIIR-----GPVTYLLDCYNANPDSMNAGLALCANIRV--SGKKI 362 Query: 373 AVLGDMCEMGELSQSFH 389 VL M E+G S H Sbjct: 363 YVLASMKELGFESHEAH 379 >gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Symbiobacterium thermophilum IAM 14863] gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/414 (28%), Positives = 183/414 (44%), Gaps = 34/414 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L+T ++ G P V+GI+ DSR + P + F A+ G DGHDF A Sbjct: 1 MTQLFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA V+ + A ++ V D +LG ++ ITGSVGKT Sbjct: 61 AARGAACVLAARPVPAGDAAV---VVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM L+ + + G+ N+ +G+P +LA + + + + E+GM GEI +L Sbjct: 118 TTKEMTAAVLAERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLAS 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP + V+T + HL E IA AK+E+ L G LN DD + A + Sbjct: 178 IARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAATP 237 Query: 241 A----LGIK-------------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 A G+ + G++ ++ W +E + + + + V Sbjct: 238 ARVWFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWV-TAENARPDGPMAQRFRLV 296 Query: 284 VHHG--------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 H G G H N L + D++ + LS+F G R R + Sbjct: 297 CHLGEADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFR---NAGNRLRL-VE 352 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 G ++D++YNA PAS+ AA+ V+ + EGR +AVLGDM E+G L H Sbjct: 353 AGGVRILDDTYNAAPASVIAALEVMRGFA-GPEGRCVAVLGDMYELGALEVEGH 405 >gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 510 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 137/488 (28%), Positives = 209/488 (42%), Gaps = 49/488 (10%) Query: 4 LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L + H +QG + + + PQ + ID+ + P F + G H DG D A Sbjct: 28 LVSAHGTPCRLQGSAAVPVGPQ-----VVIDTHQVTPGALFVGLPGEHVDGADLAPQAAG 82 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGK 119 GA +V D+ A + P V+D L+ LA VA L AITGS GK Sbjct: 83 AGAAAALVGHDVTAGL-----PRLIVEDAGRGLSALATGVVATELARGLITFAITGSSGK 137 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK++L L + T + G++NN IGVPL+ + + + E+G G++ L Sbjct: 138 TSTKDLLAQVLEATGPTVSPAGNHNNEIGVPLSACGVDATTRYLVSEMGSRGKGDVATLC 197 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V P I+ + + AHL F + IA AK EI E L G LN DD + ++ Sbjct: 198 RIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEALPADGWAVLNADDPRVAAMAPRT 257 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------I 288 +A I + G ++ +D +L + + +Q + V G I Sbjct: 258 NAH-IARWTTTGAARASDAEL--FVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLI 314 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346 G H N + D +LS + R L++ G LI++SY Sbjct: 315 GAHQVLNATAAATMALAAGLDPAAVAASLSTATTR----SPLRMELHELRGGIALINDSY 370 Query: 347 NANPASMKAAISVLSQI--SPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 NANP SM AA+ ++ + + H E R IA+LG+M E+G S H +A + + I Sbjct: 371 NANPDSMAAALHAVAAMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGI 430 Query: 402 SHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 V G H A ++ ++ E D L LV GD+V+VK+S S Sbjct: 431 DIVIALGDHAGTMAQAAREGGAQARAARKEEVADSL------ELVPGDIVLVKASRSMAL 484 Query: 458 YRLINLLL 465 + LL Sbjct: 485 EDITAQLL 492 >gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 497 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 214/464 (46%), Gaps = 37/464 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMV------ASIG 79 V + DSR F AI G DGH + A GA +V N + V A Sbjct: 38 VTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAGRD 97 Query: 80 SLSIPVFGVDDVLGALNKLAVA--ARLRSKAT-------IIAITGSVGKTTTKEMLTIAL 130 S+P+ V D + AL LA + A+LR +A+ +IA+TGSVGKTTTK++ L Sbjct: 98 PESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQIL 157 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ T A + S+NN IG+PLT+ R + + E+G S G I +LT + A + Sbjct: 158 AAQAPTVAPVASFNNEIGLPLTVLRADHTTRYLVLEMGASGSGHIAYLTSIAPLDAAAVL 217 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I AH+ F ++ +A AK+EI GL TG LN DD ++ L + +F Sbjct: 218 MIGHAHMGGFGSVDGVARAKSEIVTGLLPTGVAVLNLDDPRSAAMR----ELAPGRVLTF 273 Query: 251 GKSKNADFQLRKWK-QCSEQSW--MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306 S + LR + EQ+ +++ L G E + G+ G H N L G+ Sbjct: 274 SASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGLPGRHNVTNALAAAGLALAA 333 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISP 365 D ++AL+ G +R + + G +ID+SYNAN SM AA+ L ++ Sbjct: 334 GLDPSQVLQALA----GAGLESPHRMDVRECGGVLVIDDSYNANIDSMTAALEALPALA- 388 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G+ RR+ ++ +M E+G S + H E L+ + V ++ A R+ VH Sbjct: 389 -GQRRRVVIISEMLELGSASHADHTRTGE-LAAAAGAQVLVTIGQGAAPAAQAARAAGVH 446 Query: 426 YSETMDG-----LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E D L S L D V++K S+ G +R+ + L Sbjct: 447 TIELPDAQAAIELLDGGHSPLRPADAVLIKGSHGSGAWRVADHL 490 >gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] Length = 436 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 206/454 (45%), Gaps = 53/454 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VNG +IDSRS++ + F I DGHDFI A+ GA + + V +I V Sbjct: 20 VNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTSAGAVDGAAGAAIIV- 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 DD AL L AAR R ++ +TGSVGKT+TK++L L++ +T A S+NN Sbjct: 78 --DDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLLAGLLATTFRTAASEKSFNNE 135 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL P D + + E+G +G I L + +P + +IT + HL F IE + Sbjct: 136 LGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIGKPTVGIITRVEGVHLELFGNIEAV 195 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------- 258 A AK E+ E L G LN D + ++ A + +FG + +D Sbjct: 196 ARAKGELVEALPDDGIAVLNADHKHVAAMADRTSA----RVITFGLTPESDVHASAVVID 251 Query: 259 -QLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK- 315 +LR ++ S +++L + G H N L + L ++ + Sbjct: 252 DELRASFRLHSPWGETDIRLAAR---------GEHQVPNALAAVAAAGGLGVPLEKFAEG 302 Query: 316 ----ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 ALS G R ++ T+++++YNANP SM AA+ L+ ++ GRR Sbjct: 303 LLGAALS--------GLRMELVTSERGVTILNDAYNANPTSMSAALQSLAALA---AGRR 351 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 IAVLG M E+G S H +A S G V+A+ + + H ++ Sbjct: 352 IAVLGTMAELGHDSAWQHEAIA--------SQARELGIEVIAVGEPTYGADVRHVADVAA 403 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S L GD V+VK S R+ LL Sbjct: 404 ASAEL--SDLGAGDAVLVKGSRVAELERVAQALL 435 >gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia valaisiana VS116] gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia valaisiana VS116] Length = 463 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 212/456 (46%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 S+DSR I +FA KG DG F+ + + G V + D + + Sbjct: 32 SLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECIEYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 ELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + + IF LN + + L KAK +K +Y DF Sbjct: 212 ELQVIAFEKSKI---IGRNIEIFVLNEMNDYCVYLEKKAKIENPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L+GK + ++ G Y + N+ +G +++ L Sbjct: 262 ENLNIKSFS-------FLEGKIFYDFIYKGFEYSILLLGRHNIFNAIGCINLALFLGMGE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + Q + ++++SYN N S A ++ ++ + + Sbjct: 315 KEIREGLIETAFQKGRAE----IFTQNGYLILNDSYNGNMGSFMALKDIILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + +LG E+GE H DL + N ++L G LA++D+ L ++SE Sbjct: 369 KFIILGSFKELGEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium variabile DSM 44702] Length = 505 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 133/487 (27%), Positives = 200/487 (41%), Gaps = 54/487 (11%) Query: 20 GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 G P V G + DSR + + A+ G DGHDF+ A++ GA LV+ ++ Sbjct: 20 GADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVGPALEAGAALVMAGRPT--AL 77 Query: 79 GSLSIPVFGVD--------------DVLGALNKLAVAARLR---------SKATIIAITG 115 L P + D LG AV+ R ++ T+I +TG Sbjct: 78 PELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARHSTEVLVAENRLTVIGVTG 137 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKT+TK++L S +T A GS NN IG P T+ + + + E+ G I Sbjct: 138 SAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAGRTTKYLVAEMSARGQGHI 197 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFF 232 L + P I V+ + AHL F E IA AK E+ E L + G LN DD Sbjct: 198 AHLARIAPPRIGVVLNVGTAHLGEFGSREGIAQAKGELVEALPPAAEGGVAVLNADDDLV 257 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG- 289 + ++ A + G AD++ + + S++ +G+ ++V G Sbjct: 258 SGMAPRTAARVVYYSADQGADGTADYRASDITLDEVARASFLLHHPEGEPVKVSLGVFGA 317 Query: 290 -----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 A + G+ A T A S R T+I++ Sbjct: 318 HNVANALAAAAAAIECGLAPSEVASALTGYTAASA--------NRMDVRTRPDGLTVIND 369 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 SYNANP SM+A I L+ + G AVLG M E+GE + H + L+ I Sbjct: 370 SYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELGEDAVGEHTGIGAYLAERGIDR 429 Query: 404 VWLSGFHVLALKDALP-----RSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGF 457 + + G V +DAL I + +DG + L + GDVV+VK+S S G Sbjct: 430 LIVVGHGV--NQDALAAAGEDNGIRTRQVDDVDGAVNLLTGAPTHPGDVVLVKASYSDGL 487 Query: 458 YRLINLL 464 +R+ L Sbjct: 488 WRVAERL 494 >gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 242 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 5/198 (2%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 39 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 93 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+T Sbjct: 94 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 153 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK E Sbjct: 154 LLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 213 Query: 213 IFEGLEKTGTIFLNYDDS 230 I+ GL + G +N D++ Sbjct: 214 IYTGLPENGIAIMNADNN 231 >gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus Rock3-44] gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus Rock3-44] Length = 335 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 13/343 (3%) Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS LGEI FL+ L RP+ Sbjct: 1 MTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSLGEIEFLSKLARPN 60 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + + IA AK EI GL+ G N D+ + + L + Sbjct: 61 AAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQNGGVFVYNGDEPLL-TNRVPNMNLAAE 119 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 TI +FG ++ D+ + ++ ++ Q K +G H N L ++ I Sbjct: 120 TI-TFGDARANDYYPTSVTLQATGTYFKMN-QDKDTVFYLPVLGKHNVYNTLASMAIAKY 177 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L G R T+I+++YNA+P +M+AA +++ + Sbjct: 178 FGVTWEEMKQGLVTLQM---TGMRMEIVKTNNGLTVINDAYNASPTAMEAAFHLMNGLD- 233 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRS 421 G +++ VLGDM E+G+ FH ++ +++ IS+V+ G + + P+ Sbjct: 234 -GFAKKVVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPKE 292 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L +Q+ + + DVV+VK+S +I +L Sbjct: 293 -RVKVYDNKEELVKELQTVIDEKDVVLVKASRGMKLEEIITML 334 >gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax citrulli AAC00-1] gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax citrulli AAC00-1] Length = 501 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 114/449 (25%), Positives = 200/449 (44%), Gaps = 31/449 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++ + F A++G +D +DF+ A GA + + + + G +P V Sbjct: 36 VHTDTRTLQAGDLFVALRGERFDANDFLAQARAGGAAAALAHPGRLDAAG---LPGIEVP 92 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R R ++ +TGS GKTT +M+ L + K +A G++NN I Sbjct: 93 DTLAALGALAAGWRARLDLPLVGVTGSNGKTTVTQMIASVLRAWKGDAAFATQGNFNNDI 152 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL L R+ + + ELGM+H GEI L + RP +A++ HL ++ +A Sbjct: 153 GVPLMLLRLRDAHEAAVIELGMNHPGEIAVLAGIARPTVALVNNAQREHLEFMHTVQAVA 212 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L G D++ L + + G + +F +R C+ Sbjct: 213 EENGSVISALPPDGVAVFPAADTYAPLWRGLA---GTRRCLTFCDRAGVAADVR----CT 265 Query: 268 EQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + W +++ + + G H N L A +D + L+ F Sbjct: 266 DARWETGAWNVQIDTPQGAFDGTLRIAGRHNVANALAATACALAAGAPLDAIARGLAAFE 325 Query: 322 PKEGRGKRYRCALNQG-----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +GR + + + Q T +D++YNANP SM+AAI VL+++ G ++ V+G Sbjct: 326 PVKGRSRAFVATVAQPGGAPRRITAVDDTYNANPDSMRAAIDVLAELP----GPQLLVMG 381 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVW-LSGFHVLALKDALPRSIHVHYSETMDGLFL 435 DM E+G+ FH + I ++ L + A++ P++ H + M L Sbjct: 382 DMGEVGDQGPQFHAEAGGHARERGIGRLFALGALGIHAVQAFGPQARHF---DDMASLLA 438 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + + V+VK S +++ L Sbjct: 439 AVRKAAPESGSVLVKGSRFMKMEQVVQAL 467 >gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/11023] Length = 450 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI +A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 519 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 129/483 (26%), Positives = 207/483 (42%), Gaps = 82/483 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88 + DSR++ P F A+ G DGHD AV GA V+ + V +I ++ PV Sbjct: 34 VEFDSRAVGPGGLFLALPGARTDGHDHAEAAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91 Query: 89 DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126 D + G L A VA L TI+ ITGS GKT+TK+++ Sbjct: 92 DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + + A GS+NN +G P T+ R D D+ + E+ H G I L + P + Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V+ + AHL F E IA K+E+ + + +G + LN DD + + A Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQAVPASGVVVLNVDDPTVAAMAEVTAA----R 263 Query: 247 IYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQ 294 + G++++ + W S E+ G ++ H G G H Sbjct: 264 VVRVGRAEHTEAGPSDVW--AGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVG 321 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + A V+ + AL+ P R + + T+ID++YNANP SM+ Sbjct: 322 NALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNANPDSMR 379 Query: 355 AAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A + L+ I+ P RR AVLG+M E+G+ + + H + + ++S + + G Sbjct: 380 AGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVG 439 Query: 409 FHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGDVVVVK 450 RS+ +H+ M+G +++ L GDVV+VK Sbjct: 440 TG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLVK 490 Query: 451 SSN 453 +SN Sbjct: 491 ASN 493 >gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteriovorax marinus SJ] Length = 455 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 118/422 (27%), Positives = 189/422 (44%), Gaps = 41/422 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLS----- 82 +S DSR+ + + F + G ++DG +FI ++KG +V N + + + +LS Sbjct: 23 LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSI--KKT 136 + GVD L L LA R++ + ITGS GKTTTKEML LSS K+ Sbjct: 83 VTFIGVDSPLATLQSLA-NKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEV 141 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 +A G+ NNHIGVPLT+ P + I E+G +H+GEI L + P +I+++ AH Sbjct: 142 HATKGNLNNHIGVPLTILSAPTCCKYMIVEMGANHVGEISDLCEIAMPEFGIISSVGAAH 201 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 + F GIE I K +++ + + T +N +D + + + + FG Sbjct: 202 IGLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQISPS------EVLIKFGD 255 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S + D + K +E + + + Y +A V+I DT Sbjct: 256 SSDVDVTYDEGKIVINNVNIENVNILEKYNLSNLASAYLLA---------VNIFPDKKDT 306 Query: 313 AIKALSVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISPHG--E 368 I A S + P R + Q F ++YNANP SM++++ S + + G Sbjct: 307 FISAASEYRIPSLNRSEWIERNGKQIFL----DAYNANPTSMESSLNSFVENMKKKGIPL 362 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 + VLGDM E+G+ ++ H +A L +V G + LP I E Sbjct: 363 DDVLFVLGDMNELGDYAKDEHERIARQLDGLGAKNVIFVGNYSKYYMQGLPSGIMFEKKE 422 Query: 429 TM 430 + Sbjct: 423 DL 424 >gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70] gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70s] gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis Sweden2] gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/150] Length = 450 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI +A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 300 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 127/239 (53%), Gaps = 21/239 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNMKEGNLFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 83 PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIGSILSSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + +P +A+IT I +HL Sbjct: 143 KGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLKT 202 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 EEIA AK EI +GL G N D+ LL + LGI++ SFG+ D Sbjct: 203 LGSREEIAKAKFEIIDGLHDDGLFLYNGDEP---LLSQNINMLGIES-KSFGRKYTNDL 257 >gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 427 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 107/373 (28%), Positives = 183/373 (49%), Gaps = 28/373 (7%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +IDSR++ + FFA G ++ A KGA V+V + +F V Sbjct: 20 TIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPAR---DIFYVPS 76 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L L +LA R + +IA+TGS GKTTTKE++ L+ G+ NNHIGVP Sbjct: 77 TLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLNNHIGVP 136 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL + + + E+G +H EI L + +P IT AHL F G E + K Sbjct: 137 LTLLSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFGKAHLEGFGGFEGVIKGK 196 Query: 211 AEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 +E++ L + TI +N +D+ ++ ++ A G + +FGK ++D+ +++ S Q Sbjct: 197 SEMYSYLRANSQTILVNENDA----IQVENTA-GYSPVITFGKP-DSDYL---FEEVSNQ 247 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGK 328 +++ ++ ++ G +LG+ I ++ TAI+ + P R + Sbjct: 248 NFVGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGISFREIKTAIEN---YVPTNMRSQ 304 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 L + TL+ ++YNANP+SM+ ++ ++ EG + ++GDM E+G S++ Sbjct: 305 ----ILEKNGKTLVLDTYNANPSSMEESLKNFNRF----EGSKTIIIGDMLELGNESEAE 356 Query: 389 H---IDLAEVLSL 398 H +DLA L+ Sbjct: 357 HRRILDLAGSLAF 369 >gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 471 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 110/420 (26%), Positives = 193/420 (45%), Gaps = 27/420 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIP 84 +G+ DSR + E FF I G +DGH F ++KGA VV M P Sbjct: 27 SGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEKGACAVVAERPPFSMDEMQDRQDRP 86 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + AL +LA+ R+ + A + ITG+ GKTT KE+L LS T + N Sbjct: 87 VLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKTTVKELLAHVLSVRGATARNHLNRN 146 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PL++ D F + E G+S ++ L ++RP +AV+ + HLS G + Sbjct: 147 NQIGLPLSMLAATGDERFWVMEAGISQAADMDELGSVLRPDLAVVLNVGQGHLSGL-GDK 205 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A KA + + + + G ++ D + +LL G ++S F Sbjct: 206 GVAHYKARLLKHIARGGVGLVSAD--YPDLLAEARKNCGELRLFSAVDPAVPYFCEYAGP 263 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---IVSILTADVDTAIKALSVFH 321 + V+L+ + E G + A+N++ I+ + +A++ ++ + Sbjct: 264 AGEGRGLYRVRLESREFETEAPFRGAYGAENVIAVAAAAHILGLTSAEIAEGLRTAEL-- 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCE 380 P++ R+ C G + +ID++YNANP S A ++ + + G + V+G+M E Sbjct: 322 PQQ----RFNC-RRYGRWLVIDDTYNANPLS---AGRMVESTAENACGEPVVFVMGEMLE 373 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +GE + H +L L + V+ G H +++ L ++E +G F+ + + Sbjct: 374 LGEAAAQAHTELGRALGRACPAAVFWKGGHGGHVQEGL-------HAEGWNGPFVPVADA 426 >gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum Nigg] Length = 450 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 209/449 (46%), Gaps = 43/449 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG-------PDY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LS K +A Sbjct: 78 GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H NF Sbjct: 138 SYNSQLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFV 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258 G + IA K+ + LE+ G L D S+F K+ A +SF ++ ADF Sbjct: 198 DKGAQGIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAA---ADQFSFSMNNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-L 317 R SE + + VV +M N ++ + + + +D +A Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPVVFPYTPAYM--NFIIAVALAWLTNVPMDRLEQASQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + P G+ + +LG Sbjct: 308 SLFLPS----MRFEQQEHNG-IRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGH 360 Query: 378 MCEMGELSQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 M E+G S HI +A + ++ + W V++ DA + + + ++ Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHVVFFVGEKWSPVREVVS--DA---NCQIEFYGSVSE 415 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + ++S + GDVV++K S S L+ Sbjct: 416 IMHVVKSLVRRGDVVLLKGSRSLELETLL 444 >gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] Length = 452 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 209/449 (46%), Gaps = 43/449 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 27 VTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG-------PDY 79 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LS K +A Sbjct: 80 GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPK 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H NF Sbjct: 140 SYNSQLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFV 199 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258 G + IA K+ + LE+ G L D S+F K+ A +SF ++ ADF Sbjct: 200 DKGAQGIAEEKSLL---LERCGIHLLPRDSSWFNFFMKKNAA---ADQFSFSMNNETADF 253 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-L 317 R SE + + VV +M N ++ + + + +D +A Sbjct: 254 YYRAIH--SEGVLISAPDGDIELPVVFPYTPAYM--NFIIAVALAWLTNVPMDRLEQASQ 309 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + P G+ + +LG Sbjct: 310 SLFLPS----MRFEQQEHNG-IRIINDAYNASPDAMLAALDAVP--IPSEGGKTVFILGH 362 Query: 378 MCEMGELSQSFHIDLA-----EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 M E+G S HI +A + ++ + W V++ DA + + + ++ Sbjct: 363 MAELGRYSDECHIAVARKAVTKAHVVFFVGEKWSPVREVVS--DA---NCQIEFYGSVSE 417 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + ++S + GDVV++K S S L+ Sbjct: 418 IMHVVKSLVRRGDVVLLKGSRSLELETLL 446 >gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia multivorans ATCC 17616] gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia multivorans ATCC 17616] gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia multivorans ATCC 17616] Length = 468 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 195/450 (43%), Gaps = 32/450 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ + F A+KG +D HDF+ + + + +++P+ Sbjct: 29 VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGIALPMIVGG 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 + AL LA R R ++A+TGS GKTT KEM+ ++ +A + G+ NN Sbjct: 85 ETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGAHARLATAGNLNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L L P +A++ H + +E + Sbjct: 145 VGLPLTLLRLAAAHRLAVIELGMNHRGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I + Q+ Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVTGRLHG 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + ++ V +G H A+N L + + L F P +GR Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321 Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R A + T++D++YNANP SM+AAI VL +Q +P R+ V+GDM E+G+ Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441 +FH ++ I ++ AL DA R Y E D + + + L Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428 Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467 G V+VK S R+++ L + Sbjct: 429 AAGYGADASVLVKGSRYMKMERVVDALTNQ 458 >gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD1] gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD1] Length = 468 Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 118/450 (26%), Positives = 192/450 (42%), Gaps = 32/450 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ + F A+KG +D HDF+ + + + +++P+ Sbjct: 29 VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGVALPMIVGG 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 + AL LA R R ++A+TGS GKTT KEM+ A A G+ NN Sbjct: 85 ETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L L P +A++ H + +E + Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I + Q+ Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVTGRLHG 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + ++ V +G H A+N L + + L F P +GR Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321 Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R A + T++D++YNANP SM+AAI VL +Q +P R+ V+GDM E+G+ Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441 +FH ++ I ++ AL DA R Y E D + + + L Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428 Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467 G V+VK S R+++ L + Sbjct: 429 AAGYGADASVLVKGSRYMKMERVVDALTNQ 458 >gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] Length = 450 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITYIDVQHAMHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] Length = 450 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 450 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---AERFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI +A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAVARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDTV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia hermsii DAH] gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia hermsii DAH] Length = 464 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 122/454 (26%), Positives = 213/454 (46%), Gaps = 28/454 (6%) Query: 24 QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MV 75 Q V+ S+DSR I + + +FA KG DG F+ + + G V + D V Sbjct: 26 QRVVSFYSLDSREINDENSGASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKDYEHLCV 85 Query: 76 ASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + VF + +V+ L LA R+ IAITGS GKTTTKEML LS Sbjct: 86 EYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFKRIAITGSNGKTTTKEMLYSILSERY 145 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE+ L+ ++ P I ++T I+ Sbjct: 146 KTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYVGEMNLLSEILEPEIVIVTNISY 205 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGK 252 AH+ F +E IAS K+EI + T + LN + L+ AKS + I Y Sbjct: 206 AHMQAFEDLEMIASEKSEIIT--KSTQMVILNESCPYHSRLREIAKSISPEINIFYFDFN 263 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S Q++ + +++ + +G ++ G H N + + + +L + Sbjct: 264 S----LQIKSFAFLNDKFSYDFTYKGFDYSILLP--GKHNIFNAISCINLALLLGMSENE 317 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 L ++GR + R + ++++SYN N S A ++ + +G++ Sbjct: 318 IRNGLLNADFQKGRAELLRVKD----YLVLNDSYNGNLGSFMALKEMI--LDFEIKGKKF 371 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETM 430 +LG E+G+ + H + L N V+L G F + ++ L + ++S Sbjct: 372 IILGSFKELGKFAYEAHKTAMREVILMNFDKVFLIGEEFQEVKRRENLSLNNLCYFSNFE 431 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D + F+ ++L G + +K S S R+++ L Sbjct: 432 DFIDCFV-NNLESGCFIAIKGSRSNRLERVLDYL 464 >gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria monocytogenes FSL F2-208] Length = 346 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 12/247 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ D+R I + F G DGH+F+ A + GA ++ PV Sbjct: 39 ITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNP--PTDFPVI 96 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++NNH Sbjct: 97 LVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH 156 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ EEI Sbjct: 157 IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEI 216 Query: 207 ASAKAEIFEGLEKTG--------TIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 A AK EI GL +G T+ L N + F +L KS A I + +++ Sbjct: 217 AKAKLEITAGLNPSGILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTS 276 Query: 258 FQLRKWK 264 F + W+ Sbjct: 277 F-ITNWE 282 >gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 483 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 148/487 (30%), Positives = 221/487 (45%), Gaps = 35/487 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G IG P V G + DSR F A+ G DGH + A G Sbjct: 8 SLSQIAAAVGGRLIG--PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGALG 65 Query: 65 A-GLVVVNTDMVAS---IGSLSIPVFG---VDDVLGALNKLA---------VAARLRSKA 108 A G +V + + S G P G V+D + AL LA AA + Sbjct: 66 AVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGERL 125 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T++A+TGSVGKTTTK++ L+ T A S+NN IG+PLT+ + + E+G Sbjct: 126 TVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEMG 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G I +LT + A + + AH+ F IE +A+AKAEI GL GT LN D Sbjct: 186 ASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTILNAD 245 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQG--KSMEVVH 285 D+ + + A + T S G++ AD + + ++ ++ L G + V Sbjct: 246 DARAAAMAELAPAR-VLTFSSQGRA--ADLRTENVVLDVAARAAFDLHLPGLDEPRRVQL 302 Query: 286 HGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G H N L G+ + + ++S+ P R + G LI Sbjct: 303 SVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESP-----HRMDVSELGGDLLLI 357 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+SYNAN SM AA++VL ++ G+ RR+ V+ +M E+GE S + H E+ + + Sbjct: 358 DDSYNANIDSMTAALAVLPALA--GDRRRVVVVSEMLELGESSAADHARTGELAAQAGAA 415 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + G AL+ A R + V + I + L DGD V+VK SN G +RL + Sbjct: 416 MLIGIGSTQEALEAAGARGVEVVGFDDAATAISQIDALLSDGDAVLVKGSNGSGAWRLAD 475 Query: 463 LLLEEFP 469 L E P Sbjct: 476 HLKEVRP 482 >gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276] gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276s] Length = 450 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia trachomatis D/UW-3/CX] gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis G/11222] gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-EC] gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-LC] Length = 450 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 209/448 (46%), Gaps = 41/448 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADRFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q GDVV++K S S L+ Sbjct: 421 KALVQQ----GDVVLLKGSRSLELETLL 444 >gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 474 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 10/367 (2%) Query: 35 RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA 94 R +A + +F K +D L + A V+ + S S+ + V DV A Sbjct: 59 RRLAKNQIYFYSKSRSWDKQLAGLQSTPPAA--AVLPEGISWSSIPKSVAIVRVSDVNQA 116 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 + +LA + + + A+TGS GK+TT M+T L ++ G+ N +P L Sbjct: 117 IWRLANWNWRQVRPQVAAVTGSAGKSTTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLL 176 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 R+ +F + E+GM I +VRP + +T + AH G+ + AK E+ Sbjct: 177 RLSPGDEFLMLEMGMKSFNNIARQCRVVRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELI 236 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 +GL T++LN D + L + ++Y+FG AD Q + + +V Sbjct: 237 DGLRPGATLYLNADCLRSKQLSTRRFR---GSVYTFGIRNPADIQGSNIQYSTNGVSFDV 293 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +GK G H N L +GI L L+ R +R R + Sbjct: 294 MTEGKRGRFFIPTWGDHNVLNALAAIGIARALGIGFHQIRDGLAKVKLPRMRLQRIRGSH 353 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + TLI++++NANP++MKA +SVL +S G IAVLGDM E+G +++ H ++ Sbjct: 354 GR---TLINDAWNANPSAMKAGLSVLRYLSSKRPG--IAVLGDMMELGGYTRAGHREVGR 408 Query: 395 VLSLYNI 401 + N+ Sbjct: 409 FAARMNL 415 >gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 216 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 9/223 (4%) Query: 37 IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96 + P F A+KG +D HDF A GAG ++V+ + + +P V D A Sbjct: 1 MTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTRQAFG 55 Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+TL R+ Sbjct: 56 QLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRL 115 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK EI+ G Sbjct: 116 NHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG 175 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADF 258 L + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 176 LPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDF 215 >gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9768] gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/11074] gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9301] Length = 450 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 133/441 (30%), Positives = 207/441 (46%), Gaps = 41/441 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D P + Sbjct: 25 VTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG-------PSY 77 Query: 87 GVDDVLGALNKLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G+ + A + A+ A R++ +I ITGSVGKTTTK LSS+ K + Sbjct: 78 GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKVFMSPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF- 200 SYN+ + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F Sbjct: 138 SYNSQLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFL 197 Query: 201 -SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADF 258 G + I K+ + LE+ G + D S+F+ K+ A +SF S + ADF Sbjct: 198 DKGAQGIVEEKSLL---LERCGLQLIPKDSSWFQFFAKKNSA---ADQFSFSMSNETADF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-AL 317 R SE + + V +M N ++ + + I +D + + Sbjct: 252 YYRAIH--SEGVLISAPDGDIELPAVFPYSPAYM--NFIIAVALAWITNVPMDRLEQVSQ 307 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S+F P R+ + G +I+++YNA+P +M AA+ + + P G G+ I +LG Sbjct: 308 SLFLP----AMRFEQQEHNG-IRVINDAYNASPDAMLAALDAVP-VPPEG-GKIIFILGH 360 Query: 378 MCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLAL-KDALPR-SIHVHYSETMDGL 433 M E+G S HI A V + I V F V + +DA + + SE MD + Sbjct: 361 MAELGRYSDECHIAAARKAVTKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAV 420 Query: 434 FLFIQSSLVDGDVVVVKSSNS 454 +Q GDVV++K S S Sbjct: 421 KALVQQ----GDVVLLKGSRS 437 >gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] Length = 821 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/380 (28%), Positives = 175/380 (46%), Gaps = 9/380 (2%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH +I QKG V+N A+ Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQKGVRNFVINEIPEAASSYTDAN 83 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L +L +LA R + + +I ITGS GKT KE L LS + SYN Sbjct: 84 FLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVKEWLYQILSPDRTITRSPRSYN 143 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ M + GIFE G+S +GE+ L +++P I ++T I AH NFS ++ Sbjct: 144 SQIGVPLSVWLMNEHTELGIFEAGISEMGEMEALRPIIQPTIGILTNIGGAHQENFSSVQ 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + K ++F+ + I N D+ KS + +S S+ F + K Sbjct: 204 DKCMEKLQLFKDCD---VIVYNGDNELITSCVTKSLFTAREIAWSTKDSERPLF-IEKIL 259 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ + G E I +N L L + L +T + + P Sbjct: 260 KDDTGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVALYLMVPPETIAERMLHLEPI- 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + TLI++SYN++ AS+ A+ + + S R +L DM E G+ Sbjct: 319 --AMRLEVKEGKNGCTLINDSYNSDFASLDIALDFMMRRSEDKNRERTLILSDMLESGQT 376 Query: 385 SQSFHIDLAEVLSLYNISHV 404 S+ + +A+++ + H+ Sbjct: 377 SKLLYRQVADLVHSRKVDHI 396 >gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a] gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a] Length = 467 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 127/451 (28%), Positives = 198/451 (43%), Gaps = 43/451 (9%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 SR + P F A+ G DGHDF AV V + L +P V D Sbjct: 34 SRQVGPGTLFVALVGARSDGHDFAAAAVAA-------GAPAVLAARPLGVPAVVVADPSA 86 Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 AL LA R ++AT++A+TGS GKTTTK++L L+ + T A GS+NN IG+PLTL Sbjct: 87 ALAALAAHVRDIARATVVAVTGSAGKTTTKDLLADLLAELGPTVAAPGSFNNEIGLPLTL 146 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAE 212 R D F + E+G LG I L + RP + + + AH+ ++ G IA+AK E Sbjct: 147 LRTEPDTAFVVLEMGARGLGHIATLCAVARPSVGAVLNVGSAHVGEYTDGRLGIAAAKGE 206 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSW 271 + E + + LN DD + ++ + +FG+ AD + + + Sbjct: 207 LAEAAQD--AVILNADDPLVAAMAPRARG----EVITFGEDAAADVRGAGVRVDPLGHAS 260 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 ++ G+ V +G H N L L + A A ++ + R Sbjct: 261 FDLLAGGERHRVTLGLVGAHQVPNALAAA--AVALRLGLSPARTAAALGAARARSRWRME 318 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 +++++YNANP SM+AA++ L + G GR IAVLG M E+G+ + H Sbjct: 319 VTRTAAGVVVVNDAYNANPESMRAALATLVDM--RGAGRAIAVLGGMGELGDAADDAHDA 376 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG------- 444 L + I V G P + +H + +++G + + D Sbjct: 377 LGRLAVRLGIDQVIAVG----------PAARRIHLAASLEGSWDGESRWVADADEAVATV 426 Query: 445 -------DVVVVKSSNSCGFYRLINLLLEEF 468 DVV+VK+S S G R+ ++ F Sbjct: 427 VALARPDDVVLVKASRSYGLERVAEDVVTRF 457 >gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] Length = 256 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR AP F +KG DGH FI +++GA + D SL+ P Sbjct: 28 ITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVMEQGALATLTEEDP----SSLTCPCI 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+ AL +A R++ ++ ITGSVGKT+TKE + LS G++NN Sbjct: 84 HVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTSTKETIASVLSRKYNVLKTEGNFNNG 143 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLT+ + + + + E+G+ H GE+ L + +P I VIT I AH+ N + I Sbjct: 144 IGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASISQPDICVITNIGLAHMENLGSRDGI 203 Query: 207 ASAKAEIFEGLEKTGTIFLNYDD 229 AK E+F+ L ++ LN DD Sbjct: 204 LKAKTEVFDHLRPNASVILNGDD 226 >gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 504 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/485 (26%), Positives = 197/485 (40%), Gaps = 47/485 (9%) Query: 20 GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 G P V G + DSR + F A+ G DGH++ A+ +GA V V + Sbjct: 20 GAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGA--VAVLAARPVDV 77 Query: 79 GSLSIPVFGVDD----------------VLGALNKLA-------VAARLRSKATIIAITG 115 S+ +P D V+ AL+KLA V A T++A+TG Sbjct: 78 PSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAH---DLTVVALTG 134 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKT+TK+ + LS T A GS+NN +G+P T R + + E+ +G I Sbjct: 135 SAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHTRYLVAEMSARGIGHI 194 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFF 232 L + P I + + AHL F IA AK E+ E L G LN DD F Sbjct: 195 AHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALPAAADGGVAVLNADDPFV 254 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHG 287 + ++ A + +F + + W E ++ + S V Sbjct: 255 AAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARASFTLHTPRGSWPVSLQV 310 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + D T + LS R T+I++SYN Sbjct: 311 FGEHQVANALAAAAVAIEAGVDETTVVSGLSSH--AAASAHRMDVRTRPDGVTVINDSYN 368 Query: 348 ANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ANP SM+A ++ L+ S + AVLG M E+G+ + H L L+ Y++ + Sbjct: 369 ANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEHRALGAELAKYHVERLIA 428 Query: 407 SG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 G + AL++ A + ++ + DGDVV+VK+SN+ +R+ Sbjct: 429 VGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDVVLVKASNADQLWRVAEE 488 Query: 464 LLEEF 468 L F Sbjct: 489 LHAMF 493 >gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922] gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922] Length = 824 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 122/455 (26%), Positives = 208/455 (45%), Gaps = 26/455 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFF-AIKGPHYDGHDFILHAVQ 62 + +L Q + IG Q + D+R+I P F +KG G ++ A Q Sbjct: 7 YNLGELAQILNAKLIGDKEQT-IEEYYFDTRTIVCPTNGLFITLKGLQKSGAYYLDEAYQ 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSV 117 KG + + +V+SI + P G V DVL AL LA R R + ITGS Sbjct: 66 KG-----IRSFLVSSIPAQ--PKDGANYLLVQDVLVALQMLAKHHRQRFTLPLFGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L L + SYN+ +GVP ++ + D GIFE G+S E++ Sbjct: 119 GKTVVKEWLYQLLWNEYNIARSPKSYNSQLGVPFSVLLIDEHNDLGIFEAGVSQPNEMQA 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P A++T I AHL NF +A K ++ E ++ I DD E L + Sbjct: 179 LRCILQPTTAILTNIGSAHLENFLDRRSLALEKIQLLEAAQE---IIYPADDELIEELIS 235 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + K +FGKS A QL++++ + QS +++++ G ++ QN L Sbjct: 236 SNPVFDSKRRITFGKSDKATVQLKQYQTINGQSSIDIEISGVLFNIIIPFTDQASIQNAL 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L +++ P E R + + A+N LI++++N++ S+K A+ Sbjct: 296 ICCASIYSLNKNLNDYKSKFEKLLPIEMRLE-IKEAINNSI--LINDAFNSDLISLKNAL 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+Q S R++ VL D+ + + + AE+++ Y+ + + L G + A K Sbjct: 353 DTLAQQS---RERKVLVLTDILQSKLADKELYQKTAELVNPYHFTEIVLIGEKISAYKKL 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 +V + D IQ + +V+++K S Sbjct: 410 FKS--YVRAFSSTDDFLRHIQHENIHNEVILLKGS 442 >gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia sp. SV1] gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia sp. SV1] Length = 463 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 127/456 (27%), Positives = 218/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G V + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 ELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQTIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVS--ILTADVD 311 + K S L+GK S + V+ G Y + N+ +G ++ + + Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium psychrophilum JIP02/86] gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase [Flavobacterium psychrophilum JIP02/86] Length = 817 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/473 (27%), Positives = 219/473 (46%), Gaps = 28/473 (5%) Query: 1 MNPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFI 57 M+PL + H+++ + + GI + + ISIDSRS+ E FFA+ GP+ D H +I Sbjct: 1 MDPLTISLHNIIPILDANFQGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + KG VV G + + V + L AL A R II ITGS Sbjct: 61 GDLISKGVKNFVVTYIPKRLTGKANFLI--VKNTLVALQIFARYYRNLFHFPIIGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ +GVPL++ + + + GIFE G+S E+ Sbjct: 119 GKTIVKEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINENHNLGIFEAGISTKDEMEN 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I ++T I AH F+ I E K ++F +E + LN + + + Sbjct: 179 LQKIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVE---VLILNKNKTIETFIN- 234 Query: 238 KSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K I +F S N AD +K K ++ + + + QGK ++ I + Sbjct: 235 -------KEINTFTWSTNDQSADVFFQK-KTLNDHALLNITNQGKYFKIKIPFIDEASLE 286 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + + ++ L D+DT +S P E R K + +N TLID+SY+++ S+K Sbjct: 287 NSMHCILVMLYLKYDLDTIKHRISQLFPVEMRLK-VKNGINNC--TLIDDSYSSDFQSLK 343 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A+ L H ++ +L D+ + G ++ ++ +++++ I+ V G + Sbjct: 344 IALDFLENQKQH--LKKTLILSDIYQSGLENEDLYVRVSQLIISNKINRVICIGGVISKY 401 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 K+ I Y T D + F + + +++K S F +++ LL E+ Sbjct: 402 KNKFLNVI--SYLSTNDFIEDFDNLDFTN-ETILIKGSRHFEFEKIVTLLEEK 451 >gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp. avium ATCC 25291] Length = 519 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 127/488 (26%), Positives = 207/488 (42%), Gaps = 92/488 (18%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88 + DSR++ P F A+ G DGHD AV GA V+ + V +I ++ PV Sbjct: 34 VEFDSRAVGPGGLFLALPGARTDGHDHAESAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91 Query: 89 DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126 D + G L A VA L TI+ ITGS GKT+TK+++ Sbjct: 92 DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + + A GS+NN +G P T+ R D D+ + E+ H G I L + P + Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----------- 235 V+ + AHL F E IA K+E+ + + +G + LN DD + Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRV 267 Query: 236 -KAKSHALGIKTIY----SFGKSKNADFQL-RKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 +A+ G ++ S + F L + + Q+ +++ + G Sbjct: 268 SRAEHTEAGPSDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGD---------- 317 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L + A V+ + AL+ P R + + T+ID++YNAN Sbjct: 318 -HQVGNALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNAN 374 Query: 350 PASMKAAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 P SM+A + L+ I+ P RR AVLG+M E+G+ + + H + + ++S Sbjct: 375 PDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSR 434 Query: 404 VWLSGFHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGD 445 + + G RS+ +H+ M+G +++ L GD Sbjct: 435 LVVVGTG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGD 485 Query: 446 VVVVKSSN 453 VV+VK+SN Sbjct: 486 VVLVKASN 493 >gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Rv] gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis AF2122/97] gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Ra] gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis F11] gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis GM 1503] gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis K85] gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis K85] gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis GM 1503] gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis 210] gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu001] gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu006] gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Rv] gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis AF2122/97] gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Ra] gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis F11] gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis K85] gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis GM 1503] gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu001] gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu006] gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis W-148] Length = 510 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/490 (26%), Positives = 204/490 (41%), Gaps = 73/490 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+I P F A+ G DGHD AV GA +V+ + + ++ +P Sbjct: 34 VEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91 Query: 90 DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 +VL + A + TII ITGS GKT+TK+++ L Sbjct: 92 NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + + A GS+NN +G P T+ R D+ I E+ H G I L + P I V+ Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F E IA KAE+ + + +G + LN DD + AK L + Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 267 Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305 + D W E + L + V G+ G H N L + Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A V+ AL+ P R + T+ID++YNANP SM+A + L+ I+ Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381 Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 P R AVLG+M E+GE + + H + + ++S + + G RSI Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 432 Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457 +H+ ++G + +++ L GDVV+VK+SN+ G Sbjct: 433 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 492 Query: 458 YRLINLLLEE 467 + + L+ + Sbjct: 493 GAVADALVAD 502 >gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] Length = 426 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 114/439 (25%), Positives = 202/439 (46%), Gaps = 28/439 (6%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 ++S+ + + F A+KG +DGHDFI A++ GA ++ V S +F V+ Sbjct: 11 LNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSD-----RIFLVESS 65 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + L KLA T++ +TGS GKTTTKE+L L + + + G+ N G+PL Sbjct: 66 VDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPL 125 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 ++ + + E+ S G+I L + P +AV+ + AHL F E I K Sbjct: 126 SILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKM 185 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI + ++ +DD + + FGK + D L+ W + Sbjct: 186 EIIKHSKENAIAVTLFDDP-----DLRKEVPRYRNTLFFGK-EGGDSVLKDWWYYEGSTI 239 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQ--NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + V G ++ Q N+ +L ++ L VD I L+ G R Sbjct: 240 AEFEAFDSLFTVKLSGY-WNGGQLLNIAASLCVMRTLGETVD--IFDLASLKTVPG---R 293 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +G ++D++YNA+P + + +I L + G++ AV+G M E+GE S+ FH Sbjct: 294 FNVREKKGVL-IVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGERSKEFH 348 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +L E L++ + +V+LS +K + I + S+ + + + + + GDVV+ Sbjct: 349 EELGERLNVLDGVYVFLSEPEAEWIK---SKKI-ILKSDDPEKIAKDLATRVKKGDVVLF 404 Query: 450 KSSNSCGFYRLINLLLEEF 468 K+S + R++ + +E Sbjct: 405 KASRAVRIERVLEMFEKEL 423 >gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] Length = 510 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 137/492 (27%), Positives = 211/492 (42%), Gaps = 56/492 (11%) Query: 19 IGI-VPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 IG+ VP G V+ + D+R I P F A++G DGHDF A GA V+ + Sbjct: 13 IGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDFAATAAAAGAVAVLGSAP 72 Query: 74 MVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTI 128 + A + L +P GV D L AL + +V A +R ++ +TGS GKT+TK+++ Sbjct: 73 VSAPLPLLQVPDRPDNAGVLDALAALARASVTALVREHGLQVVGVTGSSGKTSTKDLIAA 132 Query: 129 ALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 L ++ ++ A S+NN +G P T R F + EL G I L + Sbjct: 133 VLRAVPGTGPERVIAPPESFNNELGHPYTALRADESTAFLVLELSARGAGHIAALARVAP 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-------IFLNYDDSFFELLK 236 I + + AHL F +E IA AK+E+ + L G LN DD+ + Sbjct: 193 LRIGAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQPLTGGVAILNADDALVAAMA 252 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + A + G A + Q + V +G S V +G H Sbjct: 253 ELTAA----EVVMVGTGAAAQVRATDVGQDDADRARFTLVTPEG-SAPVTLRVVGAHQIG 307 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESYNANPAS 352 N L + + +ALS P R+R + + TLI+++YNANP S Sbjct: 308 NALTAAAVGRAVGLGPQAIARALSQAEPA----SRWRMEVTELANGVTLINDAYNANPHS 363 Query: 353 MKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406 MKAA+ LS I G GRR AVLG+M E+G+ + + H + ++ + + + Sbjct: 364 MKAALHSLSTI---GRGRRTWAVLGEMAELGDEATAAHDQIGRLVVRLGVDRLLVVEGPG 420 Query: 407 SGFHVLALKDALPRSIHV------------HYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + PR++H+ +D + L GDVV+VK+S S Sbjct: 421 AATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAILLDELEPGDVVLVKASRS 480 Query: 455 CGFYRLINLLLE 466 G R+ L+E Sbjct: 481 AGLERVALRLIE 492 >gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 181/405 (44%), Gaps = 72/405 (17%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFI--------------------LHAVQKGAGLVVVN 71 +DSR +AP + FFA+ G DGHDF+ A++ G GL+VVN Sbjct: 31 VDSRKVAPGDVFFALPGEKVDGHDFVPAALAAGAACAVVRRIDDGWTAALRPGQGLIVVN 90 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 D L AL A R + +IA+TGS GKT+TK++L A+ Sbjct: 91 ------------------DGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTKDLLAAAVG 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + + G++NN IG+PLTL + I E+GM G+I L + RP + ++T Sbjct: 133 AQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALCRIARPDVGLLTN 192 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKT--- 246 I P H+ +E IA AK E+ + L G +N +D E L ++ + T Sbjct: 193 IGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGEDRQVVAETLSSRCPVVYAGTSPE 252 Query: 247 -----IYSFGKSKNADFQ---LRKWKQCSEQS---------WMEVQLQG---KSMEVVHH 286 + + G + A Q + + EQ ++ Q G + E + Sbjct: 253 ALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYEESTFEFLLP 312 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDE 344 G H N L+ L + D A L+ R + R CA+ TLI++ Sbjct: 313 LPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWETRRFDCAV-----TLIND 367 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +YNANPA+M AA++ ++++ G R +AVLGDM E+G + +H Sbjct: 368 AYNANPAAMSAALTTAAELA--GPSRLVAVLGDMYELGPEAAEYH 410 >gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2M] gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2] gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2] gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2M] Length = 468 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 192/450 (42%), Gaps = 32/450 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ + F A+KG +D HDF+ + + + +++P+ Sbjct: 29 VSTDSRTVGAGDLFVALKGERFDAHDFLADVAAR----GAAAALVAQAPAGVALPMIVGG 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 + +L LA R R ++A+TGS GKTT KEM+ A A G+ NN Sbjct: 85 ETRASLGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L L P +A++ H + +E + Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I + Q+ Sbjct: 205 ALEHAAVIHALPPDGVAVFPADDAYASIWRVAATGNRILDFALHDDERQTAAQVAGRLHG 264 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + ++ V +G H A+N L + + L F P +GR Sbjct: 265 GE---LAIDTPSGTLTVRLRALGEHNARNALAATAAALAAGVALSAIKQGLESFEPVKGR 321 Query: 327 GK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGEL 384 + R A + T++D++YNANP SM+AAI VL +Q +P R+ V+GDM E+G+ Sbjct: 322 LQVRRASAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RVLVIGDMGEVGDE 376 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSL 441 +FH ++ I ++ AL DA R Y E D + + + L Sbjct: 377 GPAFHREVGAYARERGIDALF-------ALGDA-SRDACAAYGEAARHFDDVGTLVDALL 428 Query: 442 VDG----DVVVVKSSNSCGFYRLINLLLEE 467 G V+VK S R+++ L + Sbjct: 429 AAGYGAEASVLVKGSRYMKMERVVDALTNQ 458 >gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium avium 104] gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium avium 104] Length = 533 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/483 (26%), Positives = 207/483 (42%), Gaps = 82/483 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88 + DSR++ P F A+ G DGHD AV GA V+ + V +I ++ PV Sbjct: 34 VEFDSRAVGPGGLFLALPGARTDGHDHAESAVAAGAVAVLAARPVGVPAI--VAPPVDAA 91 Query: 89 DDVLGALNKLA----------------------VAARLRSKATIIAITGSVGKTTTKEML 126 D + G L A VA L TI+ ITGS GKT+TK+++ Sbjct: 92 DALAGVLEHDADGSGAAVLAALAKLARAVAAELVAGGL----TIVGITGSSGKTSTKDLV 147 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + + A GS+NN +G P T+ R D D+ + E+ H G I L + P + Sbjct: 148 AAVLAPLGEVVAPPGSFNNELGHPWTVLRATADTDYLVLEMSARHPGNIAALAEIAPPAV 207 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V+ + AHL F E IA K+E+ + + +G + LN DD + + A ++ Sbjct: 208 GVVLNVGTAHLGEFGSREAIARTKSELPQSVPASGVVVLNVDDPTVAAMAEVTAARVVRV 267 Query: 247 IYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQ 294 + ++ +D W S E+ G ++ H G G H Sbjct: 268 SRAEHTEAGPSDV----W--AGPVSLDELARPGFTLYHSHAGGTRQARVQLGVSGDHQVG 321 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + A V+ + AL+ P R + + T+ID++YNANP SM+ Sbjct: 322 NALCAAAVALECGATVEQVVAALAGAGPVS--RHRMQVSTRGDGVTVIDDAYNANPDSMR 379 Query: 355 AAISVLSQIS-----PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A + L+ I+ P RR AVLG+M E+G+ + + H + + ++S + + G Sbjct: 380 AGLQALAWIARGGAEPGAPARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVG 439 Query: 409 FHVLALKDALPRSIH-VHYSETMDG-----------------LFLFIQSSLVDGDVVVVK 450 RS+ +H+ M+G +++ L GDVV+VK Sbjct: 440 TG---------RSVSAMHHGAVMEGSWGSADKGAVNVPDAEAALELLRAELQPGDVVLVK 490 Query: 451 SSN 453 +SN Sbjct: 491 ASN 493 >gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 1435] gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 605] gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN 4207] gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN R506] gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN V2475] gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 1435] gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 605] gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 4207] Length = 510 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/490 (26%), Positives = 204/490 (41%), Gaps = 73/490 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+I P F A+ G DGHD AV GA +V+ + + ++ +P Sbjct: 34 VEFDSRAIGPGGLFLALPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91 Query: 90 DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 +VL + A + TII ITGS GKT+TK+++ L Sbjct: 92 NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + + A GS+NN +G P T+ R D+ I E+ H G I L + P I V+ Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F E IA KAE+ + + +G + LN DD + AK L + Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVARV 267 Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305 + D W E + L + V G+ G H N L + Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A V+ AL+ P R + T+ID++YNANP SM+A + L+ I+ Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381 Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 P R AVLG+M E+GE + + H + + ++S + + G RSI Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 432 Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457 +H+ ++G + +++ L GDVV+VK+SN+ G Sbjct: 433 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 492 Query: 458 YRLINLLLEE 467 + + L+ + Sbjct: 493 GAVADALVAD 502 >gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 528 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/485 (26%), Positives = 197/485 (40%), Gaps = 47/485 (9%) Query: 20 GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 G P V G + DSR + F A+ G DGH++ A+ +GA V V + Sbjct: 44 GAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGA--VAVLAARPVDV 101 Query: 79 GSLSIPVFGVDD----------------VLGALNKLA-------VAARLRSKATIIAITG 115 S+ +P D V+ AL+KLA V A T++A+TG Sbjct: 102 PSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAH---DLTVVALTG 158 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKT+TK+ + LS T A GS+NN +G+P T R + + E+ +G I Sbjct: 159 SAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCTTHTRYLVAEMSARGIGHI 218 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFF 232 L + P I + + AHL F IA AK E+ E L G LN DD F Sbjct: 219 AHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGELVEALPAAADGGVAVLNADDPFV 278 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-----QSWMEVQLQGKSMEVVHHG 287 + ++ A + +F + + W E ++ + S V Sbjct: 279 AAMAPRTTA----RVVTFSTANPPAPGAQYWAGDLELDDVARASFTLHTPRGSWPVSLQV 334 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + D T + LS R T+I++SYN Sbjct: 335 FGEHQVANALAAAAVAIEAGVDETTVVSGLSSH--AAASAHRMDVRTRPDGVTVINDSYN 392 Query: 348 ANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ANP SM+A ++ L+ S + AVLG M E+G+ + H L L+ Y++ + Sbjct: 393 ANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEHRALGAELAKYHVERLIA 452 Query: 407 SG--FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 G + AL++ A + ++ + DGDVV+VK+SN+ +R+ Sbjct: 453 VGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDVVLVKASNADQLWRVAEE 512 Query: 464 LLEEF 468 L F Sbjct: 513 LHAMF 517 >gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] Length = 825 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 123/448 (27%), Positives = 206/448 (45%), Gaps = 30/448 (6%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87 DSRS+ P+E FFA++ DGH++I ++G VV + + +FG Sbjct: 30 DSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGVRCFVVE-----EVPERAAELFGNAN 84 Query: 88 ---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL +LA R I+ ITGS GKT KE L LS SYN Sbjct: 85 FLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ + G+FE G+S GE++ L +++P IAV+T I AH NFS E Sbjct: 145 SQIGVPLSVWLLNSHSQLGVFEAGISQKGEMQALHDIIKPTIAVLTNIGSAHEENFSTPE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 E K +FEG E + N DD+ + +++ G +S S A F + K Sbjct: 205 EKCREKLRLFEGAE---IMVYNADDALVTHVLNETNNGGQHLAWSTKSSDAAMFVTKIDK 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 Q + + + G+ I N ++ + L D T + +S P Sbjct: 262 QPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVCLHLGLDAHTIGERISKLEPVA 321 Query: 325 GRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + +G TLI++SYN++ S+ A++ +++ H +R VL D+ + G Sbjct: 322 -----MRLEVKEGLNGCTLINDSYNSDINSLDIALNFMNRRPDHNGQQRTLVLSDILQSG 376 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + +++ ++ + G + A K+ + + H+ ++D FI+SS+ Sbjct: 377 LPDAELYREVSSLVEQRGVQKFIGIGPKICANKECIALA-EQHFFASVDE---FIRSSVF 432 Query: 443 DG---DVVVVKSSNSCGFYRLINLLLEE 467 G +VV++K + S GF +L L++++ Sbjct: 433 KGLHNEVVLLKGARSFGFDQLTELMVKK 460 >gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii PBr] gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii PBr] Length = 463 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 128/457 (28%), Positives = 209/457 (45%), Gaps = 48/457 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF+ N + + L +AK +K +Y DF Sbjct: 212 ELQSIAFEKSKI---IGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + K S L+GK S + V+ G Y ++ LG +I A + Sbjct: 262 ESLNIKSFS-------FLEGKFSYDFVYKGFEYS-----ILLLGRHNIFNAIGCINLALF 309 Query: 318 SVFHPKEGRGKRYRCALNQGF--------FTLIDESYNANPASMKAAISVLSQISPHGEG 369 KE R A +G + ++++SYN N S A +++ + +G Sbjct: 310 LGMREKEIREGLIETAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKNMILDLDI--QG 367 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYS 427 ++ VLG E+GE S H DL + N ++L G L ++ + L ++S Sbjct: 368 KKFMVLGSFKELGEFSYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKCLYYFS 427 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E D F SL +V+K S R++N + Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 461 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 177/384 (46%), Gaps = 28/384 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFG 87 +++DSR + + F A++G DGH F+ A+ +GA ++V + I G Sbjct: 30 VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVEISKLEEIRPGLGGASCLA 89 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D AL ++A ++ ITGSVGKTTT+E++ L K + SYN I Sbjct: 90 VPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVILSLLGRRFKVHGSPKSYNTLI 149 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+ T+ M D + E G S GEI L P VIT +APAHL ++ + Sbjct: 150 GLSATVMGMDRGCDNLVLEYGTSSFGEISKLVSYFPPDEMVITEVAPAHLERLRDVQGVL 209 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRK---- 262 AK EI LE FL+Y ++ +LL G+ T+ G + D ++ Sbjct: 210 RAKLEI---LESQRGRFLSY-NADNDLLWGAVTGGGL-TVQRMGVGVRRGDVRISDRRIV 264 Query: 263 WKQCSEQSWMEVQLQGKSMEVVH-----HGIGYHMAQNMLMTLGI-VSILTADVDTAIKA 316 W + + + +EV HG Y +A + +M L V L +V Sbjct: 265 WGDDGPRLNFNLHHGDRQLEVSSGLWPLHG-AYPLALSWVMALRFGVEDLFPEVAYG--- 320 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F P +GRG+ R +G + L+DESYNANP SM AI +++ G R AVLG Sbjct: 321 ---FKPVKGRGRAIRS--REGGW-LMDESYNANPTSMFGAIDSTLELARGGSMRPQAVLG 374 Query: 377 DMCEMGELSQSFHIDLAEVLSLYN 400 M EMGE S +H + + L+ + Sbjct: 375 GMLEMGEDSSLWHRRIVDRLNGFQ 398 >gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] Length = 825 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 121/448 (27%), Positives = 204/448 (45%), Gaps = 30/448 (6%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--- 87 DSRS+ P+E FFA++ DGH++I ++G VV + + + +FG Sbjct: 30 DSRSLCFPEETLFFALRSNRNDGHNYISELYRRGVRCFVVE-----EVPARAAELFGDAN 84 Query: 88 ---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL +LA R I+ ITGS GKT KE L LS SYN Sbjct: 85 FLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ + GIFE G+S GE++ L +++P+IAV+T I AH NF+ E Sbjct: 145 SQIGVPLSVWLLNSHSQLGIFEAGISQKGEMQALHDIIKPNIAVLTNIGSAHEENFATPE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 E K +FEG E + N DD + +++ G + +S A F + K Sbjct: 205 EKCREKLRLFEGAE---VMVYNADDDLVTRVLNETNNKGERLAWSTKSPNAAMFVTKIDK 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 Q + + + G+ I N ++ I + D T K + P Sbjct: 262 QPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATICLHVGLDAHTIDKRMRRLEPVA 321 Query: 325 GRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + +G TLI++SYN++ S+ A+ +++ H +R VL D+ + G Sbjct: 322 -----MRLEVKEGLNGCTLINDSYNSDINSLDIALDFMNRRPDHNGQQRTLVLSDILQSG 376 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + +++ + + G + A K+++ R H+ +++ FI+S + Sbjct: 377 LPDAELYKEVSSLAEQRGVQKFIGIGPKICANKESI-RLAERHFFASVED---FIRSDVF 432 Query: 443 DG---DVVVVKSSNSCGFYRLINLLLEE 467 G +VV++K + S GF +L L++++ Sbjct: 433 KGLRNEVVLLKGARSFGFDQLTELMVKK 460 >gi|218659512|ref|ZP_03515442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli IE4771] Length = 156 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 69/130 (53%), Positives = 91/130 (70%) Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 IDESYNANPASM+AAI++L+ P G GRRIAVLGDM EMGE ++ H DLA L I Sbjct: 17 IDESYNANPASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGI 76 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 HVWL+G + ALK++LP S+HV Y E L ++ +S+ GDV++VKSS GF +++ Sbjct: 77 EHVWLAGADMAALKESLPESVHVEYREKTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIV 136 Query: 462 NLLLEEFPAI 471 LL++FP I Sbjct: 137 AALLDKFPGI 146 >gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170] gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170] Length = 823 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 9/375 (2%) Query: 24 QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 Q ++ I DSRS+ P+E FFA+K DGH +I +G VV Sbjct: 21 QASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYARGVYNFVVAEVPEEMKNCT 80 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V +VL AL +LA R + + +I ITGS GKT KE L LS K+ Sbjct: 81 DVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKTVVKEWLYQLLSPDKRIIRSPR 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 SYN+ IGVPL++ M + GIFE G+S +GE+ L ++RP I V+T I AH NFS Sbjct: 141 SYNSQIGVPLSVWMMDEHTELGIFEAGISEMGEMETLEPIIRPTIGVLTNIGGAHQENFS 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +++ K +F ++ I N D+ +KS + +S + F + Sbjct: 201 SLQDKCMEKLLLF---KECDVIVYNGDNELIRDCVSKSLFTAREIAWSMKDPERPLF-IE 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K ++ + + ++ + G E I +N L L + L + + ++ Sbjct: 257 KIEKDAAGTTIKYRYLGFFKEFRIPYIDDASIENSLHCLAVALYLMVPTEVIAERMAHLE 316 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + LI++SYN++ AS+ A+ +++ S RR +L D+ E Sbjct: 317 PV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARRSEDKARRRTLILSDILET 373 Query: 382 GELSQSFHIDLAEVL 396 G+ + + +AE++ Sbjct: 374 GQPGKLLYRQVAELV 388 >gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC 13950] Length = 419 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 172/392 (43%), Gaps = 61/392 (15%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 VA LR I+ ITGS GKT+TK+++ L + + A GS+NN +G P T+ R + Sbjct: 29 VAGGLR----IVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPE 84 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 DF + E+ H G I L + P I V+ + AHL F E IA K+E+ + + + Sbjct: 85 TDFLVLEMSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSELPQSVPE 144 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----- 274 +G + LN DD + + A ++ + S QL W S EV Sbjct: 145 SGVVILNADDPAVAAMAGVTAARVVRVSRAENTSAGPS-QL--W--AGPVSLDEVARPCF 199 Query: 275 -----QLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 G + V G+ G H N L + ADVD AL+ P Sbjct: 200 TLHHRDASGTTQAQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPV----S 255 Query: 329 RYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-------RRIAVLGDMC 379 R+R T+ID++YNANP SM+A + L+ I+ HG G R AVLG+M Sbjct: 256 RHRMHVTTRADGVTVIDDAYNANPDSMRAGLQALAWIA-HGGGDRPAEKRRSWAVLGEMA 314 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQ 438 E+GE + + H + + ++S + + G RS+ +H+ M+G + Sbjct: 315 ELGEDAIAEHDRIGRLAVRLDVSRLVVVGSG---------RSMSAMHHGAVMEGSWGSAD 365 Query: 439 SSLVD-----------------GDVVVVKSSN 453 V+ GDVV+VK+SN Sbjct: 366 KGAVNVADGEAALALLRAELQPGDVVLVKASN 397 >gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylococcus capsulatus str. Bath] gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylococcus capsulatus str. Bath] Length = 449 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 121/445 (27%), Positives = 191/445 (42%), Gaps = 31/445 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S D+R+I P FFA++G +D HDFI AV GA +VV + + + +P Sbjct: 24 DGVSTDTRAIRPGSLFFALRGDRFDAHDFIADAVGGGAAALVVERRIDTPLPQIIVP--- 80 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144 D AL A A R + +IA+ GS GKTT +M+ L++ ++ A G+ N Sbjct: 81 --DGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQMIAAILAAAFGEERRLATRGNLN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N +G+PL L + + ELGM+H GEI +L +L RP +A++T H + +E Sbjct: 139 NDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANLARPTVALVTNAQREHQEFMASVE 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 A + L GT DD + + + G + + F + A ++ Sbjct: 199 ATAHENGSVIAALPTDGTAVFPADDPCAGIWRKLA---GTRRVIDFARRGTATVS-GTFR 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + + + G H N L + + L F P Sbjct: 255 TSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATAAALAAGVPPEAIRRGLESFRPVA 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG + R LID++YNANP S++AAI VL+ RI LGDM E+G Sbjct: 315 GRGVQLRTRTGA---RLIDDTYNANPDSVRAAIDVLAGFPQP----RILALGDMGEVGVH 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQS 439 FH ++ +I +LAL + ++ H+ TMD L + S Sbjct: 368 GPEFHREIGRYARERDID-------TLLALGELSSETVRTFGTSGHHFGTMDELIAALAS 420 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 + ++VK S R + L Sbjct: 421 ADRPEATLLVKGSRFMQMERAVKAL 445 >gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 211/445 (47%), Gaps = 32/445 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I IDSR ++ + F +KG DG+DF+ A+ KGA LV + V VD Sbjct: 19 IVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFDDQ------RVLRVD 72 Query: 90 DVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L + A + +SK + I ITGS GKTTTKE+ + LS + + + G+ N IG Sbjct: 73 DTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGNLNTEIG 132 Query: 149 VPLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +PL+L R +G+FE G S G+I L +V+P IAV+ + AH+ NF I+E Sbjct: 133 LPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVLLNVGSAHVGNFKDIDE 192 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + K IF+ + + D E L+ S L ++ + FGK ++ DF + + Sbjct: 193 LLQEKLSIFKSKRLSRAVLGGCD----ERLREFSKGLPVEVLL-FGK-EDVDFSIVDFAY 246 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + G V GI + L+ LG ++ V ++ + K Sbjct: 247 DKGDTMLHFFCDGDRF-VRLRGIWSY---GQLLDLGAAYLVARLVGVEEPSVFLNDYKLP 302 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R+ ++ +G T+I + YN++ S ++AI + ++ R+IAV G + E G Sbjct: 303 FSDRFTVSILKG-ITVISDFYNSSLESWESAILSIEKLRSS---RKIAVAGSILEQGREE 358 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H L E+LS ++ + ++ + A K+ P + S++ + + ++ ++ G Sbjct: 359 KRTHERLGELLSKFDETVLFTRDMAINAASKNVKPALV----SDSEEEIAAWLHRNVRSG 414 Query: 445 DVVVVKSSNSC---GFYRLINLLLE 466 D+V K+S + G Y+ L+E Sbjct: 415 DLVFFKASRAIALEGVYKSFMELIE 439 >gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium marinum M] gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium marinum M] Length = 525 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 138/513 (26%), Positives = 211/513 (41%), Gaps = 73/513 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF----VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 +T ++ + + G + I PQ V G + DSR++ P F A+ G DGHD Sbjct: 4 YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAS 63 Query: 60 AVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLA------------------- 99 AV GA V+ + V +I P D + G L A Sbjct: 64 AVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123 Query: 100 ---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 VA L TII ITGS GKT+TK+++ L + + A GS+NN +G P T+ R Sbjct: 124 AELVAGGL----TIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRA 179 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ I E+ H G I L + P I V+ + AHL F E IA K+E+ + Sbjct: 180 TRGTDYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQA 239 Query: 217 LEKTGTIFLNYDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSW 271 + +G + LN DD + E+ A+ +G T G + D W S Sbjct: 240 VPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDV----WAGPVSLDRL 295 Query: 272 MEVQLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 Q G + V G+ G H N L + A V AL+ P Sbjct: 296 ARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--R 353 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---------------RRI 372 R + + T+ID++YNANP SM+A + L+ I+ GE R Sbjct: 354 HRMQVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIA-RGEAESTAASQPGVRPQSRRSW 412 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHV 424 AVLG+M E+G + + H + + ++S + + G +H ++ + Sbjct: 413 AVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAMYHGAVMEGSW--GTEA 470 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 D +++ + GDVV++K+SNS G Sbjct: 471 VSVPDRDAALALLRAEIQPGDVVLIKASNSAGL 503 >gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Intrasporangium calvum DSM 43043] gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Intrasporangium calvum DSM 43043] Length = 470 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 203/443 (45%), Gaps = 43/443 (9%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV----- 88 SR P + A G DGHD+ AV VA +GS PV GV Sbjct: 36 SRDCVPGSLYVARLGEFADGHDYAPAAVA---------AGAVAVLGSR--PVEGVATVVV 84 Query: 89 DDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 DDV A ++A R+ + I+ ITGS GKT+TK++L LS+ +T A + S N I Sbjct: 85 DDVQTAFGQVARGVVDRAPELRIVGITGSSGKTSTKDLLAAVLSTAGETVAPVNSLNGEI 144 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ R+ F + E+G +G I +LT + P +A++ + AH+ F IA Sbjct: 145 GVPLTVCRVTPTTRFLVAEMGARGIGHIDYLTRIAPPDVAIVLNVGTAHVGEFGSRANIA 204 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQ 265 +AK+E+ + G LN DD L+ A + L + + G+S A+ + + Sbjct: 205 AAKSELPRAVRPGGLSILNADDP---LVAAMAGGLASR-VQLVGQSPEAEVRAEATILDE 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ V +G++ + +H+ ++ + + + A ALS P Sbjct: 261 LGRAAYDLVTPRGRARVSLRLSGAHHVGNSLAVAAAALELGLPLAQVA-AALSGAVPA-- 317 Query: 326 RGKRYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R+R + + +++++YNANP SM+AA+ L+ I+ GE R AVLG+M E+G Sbjct: 318 --SRWRMEITERPDGVVIVNDAYNANPDSMRAALDALAAIATTGE--RWAVLGEMLELGS 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 + H + + I HV G V D +P +D + S L Sbjct: 374 DREREHAAIGSYAAGLGIDHVVAVGDGARVYDAPDWVP---------DVDAAHDHLASRL 424 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 GDVV++KSS G L + L Sbjct: 425 RPGDVVLLKSSRDSGLRWLGDRL 447 >gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia spielmanii A14S] gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia spielmanii A14S] Length = 463 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + + D + + Sbjct: 32 SLDSREINGDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + DV+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIVIITNINYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEKNDYCAYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L+GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ENLNIKSFS-------FLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIREGLIETTFQKGRAE----ILIKNGYLILNDSYNGNMGSFIALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSE 428 + VLG E+GE + H DL + N ++L G L ++ + L ++SE Sbjct: 369 KFIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRYSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERVLNYI 463 >gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii PKo] gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii ACA-1] gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii PKo] gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii ACA-1] Length = 463 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 122/455 (26%), Positives = 214/455 (47%), Gaps = 44/455 (9%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + + D + + Sbjct: 32 SLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA R+ IAITGS GKTTTKE+L LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGISYVGEMDLLSQILKPEIVIITNISYAHMQAFR 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 G++ IA K++I + K IF +N + + L +AK +K +Y D+ Sbjct: 212 GLQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDY 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S +GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ENLNIKSFSFS-------EGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIREGLIETTFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429 + VLG E+GE + H DL + N ++L G L ++D+ +++Y Sbjct: 369 KFIVLGSFKELGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVGKYLYYFSE 428 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 329 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 7/249 (2%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSIP 84 GI+ D+R + + F A++G +DG DF A++ GA V+ V+ + Sbjct: 30 GITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTPGA 89 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V GV D L A ++A A R++ ++A+TGS GKTTTKE+ ALS +YN Sbjct: 90 VIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAANYN 149 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLTL M + + E+GM G+I L + P + ++T + H+ IE Sbjct: 150 NEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLGSIE 209 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+E+ E + G + LN DD+ ++A++ A G++ I ++G AD + + + Sbjct: 210 NIARAKSELVEAIAPGGIVILNADDARVAAMRAQA-ADGVR-ILTYGIRAKADIRAQALR 267 Query: 265 Q-CSEQSWM 272 C+E +M Sbjct: 268 SACNETRFM 276 >gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus faecalis TX0470] gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus faecalis TX0470] Length = 306 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 16/317 (5%) Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 MP + + I E+GM H EI FL++L +P +A IT I AH+ N IA AK EI + Sbjct: 1 MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 GL K G++F+ D+ E L K + + +FG S+ + Q + EQ+ ++ Sbjct: 61 GLAKDGSLFVPSDEPLLEPLVEKV----TQQVITFGFSQESQLQGIVTNEAKEQTSFKI- 115 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 M G + N L+ +GI K L+ + R + + A Sbjct: 116 -SDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAA-- 172 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ + YNANP +M + S++S G+RIAVLGDM E+G S + H +A+ Sbjct: 173 -NGAEILSDVYNANPTAMGLVLDSFSKMSKV--GKRIAVLGDMLELGPDSAAMHQAMAQH 229 Query: 396 LSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 L+ I V+L G + L D L + IH E + L ++ L D+VV+K Sbjct: 230 LAPDAIEEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLK 289 Query: 451 SSNSCGFYRLINLLLEE 467 SN G +I+ LLE+ Sbjct: 290 GSNGMGLREVIDALLEK 306 >gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium ulcerans Agy99] gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium ulcerans Agy99] Length = 525 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 106/381 (27%), Positives = 164/381 (43%), Gaps = 41/381 (10%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L + + A GS+NN +G P T+ R D+ I E+ Sbjct: 132 TIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRSTDYLILEMS 191 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA K+E+ + + +G + LN D Sbjct: 192 ARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPASGVVILNAD 251 Query: 229 D----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQ---GKS 280 D + E+ A+ +G T G + D W S Q G + Sbjct: 252 DPAVAAMAEVTAARVVRVGRATATGAGWAGPGDV----WAGPVSLDRLARPQFTMHAGDA 307 Query: 281 MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V G+ G H N L + A V AL+ P R R + Sbjct: 308 AAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPVS--RHRMRVSTRPDGV 365 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEG---------------RRIAVLGDMCEMGEL 384 T+ID++YNANP SM+A + L+ I+ GE R AVLG+M E+G Sbjct: 366 TVIDDAYNANPDSMRAGLQALAWIA-RGEAESTAASQPGVRPQSRRSWAVLGEMAELGAD 424 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLF 436 + + H + + ++S + + G +H ++ + D Sbjct: 425 AITEHDHIGRLAVRLDVSRLVVVGTGRSMSAIYHGAVMEGSW--GTEAVSVPDRDAALAL 482 Query: 437 IQSSLVDGDVVVVKSSNSCGF 457 +++ + GDVV++K+SNS G Sbjct: 483 LRAEIQPGDVVLIKASNSAGL 503 >gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis CDC1551] gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis CDC1551] Length = 510 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 128/481 (26%), Positives = 203/481 (42%), Gaps = 55/481 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+I P F + G DGHD AV GA +V+ + + ++ +P Sbjct: 34 VEFDSRAIGPGGLFLRLPGARADGHDHAASAVAAGAAVVLAARPV--GVPAIVVPPVAAP 91 Query: 90 DVLGAL-------------------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 +VL + A + TII ITGS GKT+TK+++ L Sbjct: 92 NVLAGVLEHDNDGSGAAVLAALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVL 151 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + + A GS+NN +G P T+ R D+ I E+ H G I L + P I V+ Sbjct: 152 APLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVL 211 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AHL F E IA KAE+ + + +G + LN DD + AK L + Sbjct: 212 NVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 267 Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305 + D W E + L + V G+ G H N L + Sbjct: 268 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 323 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A V+ AL+ P R + T+ID++YNANP SM+A + L+ I+ Sbjct: 324 CGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 381 Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALK 415 P R AVLG+M E+GE + + H + + ++S + + G H L+ Sbjct: 382 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLE 441 Query: 416 DAL--PRSIHVHYSETM-------DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +A + H ++ D +++ L GDVV+VK+SN+ G + + L+ Sbjct: 442 EAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVA 501 Query: 467 E 467 + Sbjct: 502 D 502 >gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941] gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941] Length = 849 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 107/352 (30%), Positives = 164/352 (46%), Gaps = 15/352 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G S DSR E F A++ P DGH +I A+ GA +V T S + I Sbjct: 29 TGFSYDSRLTGVGELFLALRTPRDDGHAYITDALASGAAGIVCATPPTESANATVI---- 84 Query: 88 VDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + D L A RLR A ++ +TGSVGKT+T + L+ I T+ S+N+ Sbjct: 85 IADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTTRAIAAVLAGIAPTFRSRRSFNSL 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P++LAR+ D F + E G ++ GE+R LT L P IAV+T+ +P LS F + + Sbjct: 145 IGLPVSLARLQDDHRFAVLEYGTAYPGELRRLTTLFPPQIAVVTSASPMRLSAFGSVAGL 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 + E L G LN DD L+A + + + +FG D + + Sbjct: 205 TREFGALVEALPADGWAVLNGDDPTVAALRAVT----LAQVLTFGAGGGCDLRAETLRFG 260 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + G S++ +G L +G+ ++ A L+ P GR Sbjct: 261 LDGTQVRLSYGGASVDAAIPLLGEPAVGAALAAVGVGLACGMSLEQAAARLAHIEPPAGR 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R A N L+D++ A PA+M AA+ L+ + RRIAVLGD+ Sbjct: 321 -LRPHPARNGAI--LLDDTVGAEPAAMLAALRTLAALPAR---RRIAVLGDL 366 >gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis 02_1987] gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis 02_1987] gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis 02_1987] Length = 463 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 83 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 142 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 143 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 202 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 203 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 254 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 255 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 312 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 313 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 372 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 373 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 423 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 424 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 455 >gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 472 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 126/457 (27%), Positives = 205/457 (44%), Gaps = 37/457 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR P F + G DGHDF AV++GA V+ + +++PV V Sbjct: 29 VVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLA----AGPLPGINVPVLVVP 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D + AL +LA R R+KA ++A+TG+ GKTT KE+L LS KT ++NN IG+ Sbjct: 85 DTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQVLSLGGKTARNAMNHNNQIGM 144 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P + D F I E G+S G++ L ++RP IAV+ H G + +A Sbjct: 145 PRAVLGTDGDEKFWIMEAGISQQGDMDDLGSVLRPDIAVVLNAGTGHTEGL-GEKGVAWH 203 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KA + + L K G + D + +L++ ++ A + G ++A+F+ + Sbjct: 204 KARLLKYLAKGGKGLVCAD--YPDLVR-EARATETDICFFSGSGRDAEFRAVYAGAAPQG 260 Query: 270 SWM---------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + L G+ +V G + A+N+ + +L D+ + L+ Sbjct: 261 AAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGAENVAAVAAVAHMLGLDLQAIRQGLAQA 320 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMC 379 R + + G + LID++YNANP SM +L + GR +AVLG M Sbjct: 321 RMPAQRFNQVQA----GSWLLIDDTYNANPLSMG---RMLDAAAERAAGRPFVAVLGAML 373 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFI 437 E+G + H L L+ N S + G H ++ L + + + T G F+ Sbjct: 374 ELGSQAAMEHEALGRRLAGLNPSAIVWKGLHAEDVRKGLTLAGYAGPWQVVTDAGEFMKT 433 Query: 438 QSSLVD----------GDVVVVKSSNSCGFYRLINLL 464 +L D G VV+ K S S L+ +L Sbjct: 434 WQTLQDYGLENKAAKSGGVVLFKGSRSNRLETLVAVL 470 >gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia garinii Far04] gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia garinii Far04] Length = 463 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 213/456 (46%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF+ N + + L +AK +K +Y DF Sbjct: 212 ELQSIAFEKSKI---IGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L+GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ESLNIKSFS-------FLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ + +G+ Sbjct: 315 KEIREGLVETAFQKGRAE----ILTKNGYLILNDSYNGNMDSFMALKNMILDLDI--QGK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSE 428 + VLG E+GE + H DL + N ++L G L ++ + L ++SE Sbjct: 369 KFMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu003] gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu003] Length = 435 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 55 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 114 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 115 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 174 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 175 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 226 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 227 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 284 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 285 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 344 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 345 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 395 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 396 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 427 >gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis H37Ra] Length = 445 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 65 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 124 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 125 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 184 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 185 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 236 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 237 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 294 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 295 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 354 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 355 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 405 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 406 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 437 >gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] Length = 427 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/450 (25%), Positives = 192/450 (42%), Gaps = 81/450 (18%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P AF A+ G G+ FI AV +GA V+ + ++ V D Sbjct: 33 DSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKAVQ--------VQDPW 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL +L A R R ++ +TGSVGKTTTKE L L+ + ++ P Sbjct: 85 QALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGLA--------WPAPEGNLNTPPA 136 Query: 153 LAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 LAR +P + ELG+ +GE++ L L +P I V+T IAPAHL +E +A Sbjct: 137 LARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLTAIAPAHLEALGSLEVVAR 196 Query: 209 AKAEIFEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K+++ + + T Y L + + ++G Sbjct: 197 EKSQLLQASRVRIASTQAARY--------------LSLPEVRTYG--------------- 227 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML--------------MTLGIVSILTADVDT 312 + E QG+ + + G + Q L L + +L D+D Sbjct: 228 ----FEEGTFQGRDLTITPEGTRFRYGQRTLHLPYPGYGPALGALAALAVAEVLGQDLDQ 283 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L GR R +G I ++YNANPAS++A + L + GR+I Sbjct: 284 VCQHLEALRLPPGRMHLVR----RGGVLFIHDAYNANPASVRAGLESLDRFP----GRKI 335 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 VLG M E+G ++++H++ A + + V++ G + + ++ V +ET Sbjct: 336 VVLGTMKELGPQAEAYHLEAARLAARVAQRAVFV-GEYAPQMARLFEGALAVTDAETARQ 394 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 +++ + GDV+ +K+S + G R++ Sbjct: 395 A---LKAQVRPGDVIYLKASRAVGLERVLE 421 >gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 72a] gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 64b] gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 118a] gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 72a] gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 64b] gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 118a] gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi N40] Length = 463 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 217/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311 + K S L+GK S + V+ G Y + N+ +G + ++ + Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis 94_M4241A] gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis 94_M4241A] gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu008] gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis 94_M4241A] gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu008] Length = 439 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 59 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 118 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 119 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 178 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 179 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 230 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 231 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 288 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 289 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 348 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 349 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 399 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 400 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 431 >gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu004] gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu004] gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mycobacterium tuberculosis CDC1551A] Length = 431 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 51 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 110 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 111 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 170 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 171 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 222 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 223 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 280 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 281 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 340 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 341 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 391 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 392 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 423 >gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6] gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6] Length = 845 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 123/442 (27%), Positives = 201/442 (45%), Gaps = 20/442 (4%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S DSR AP E F A++ P DGHD+I A+ GA ++ + S G+ V DD Sbjct: 27 SYDSRLTAPGECFVALRTPRADGHDYIPAAIAAGATGILCSWPPADSAGTT---VLLCDD 83 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L + A A + T++ ITGSVGKTT + L+ T+ S+N+ +G+P Sbjct: 84 PQTTLLRWASARLAAVQPTVVDITGSVGKTTARRAAAAVLARRAATFQSRRSFNSFLGLP 143 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + +AR+ F + ELG H GEI L P IA++T + AHL +F +E IA+ K Sbjct: 144 IAIARLEDQHRFAVLELGSDHRGEIARLATFFPPKIALVTAVEAAHLRSFGSLEAIAAEK 203 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 ++ L G +N D L ++ A I ++G+ ++ D R + + + Sbjct: 204 GDLLAALPPKGVAIINGDSPLARALMGRTKAHTI----TYGQGRSCDLSGRGLRYGLDGT 259 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + ++ G ++V IG L + + D+ + AL P G R Sbjct: 260 LLRLRWCGTEVDVHTPLIGIPGLYAALAGVAVGLACGMDLVDCVAALPHIVPVAG---RL 316 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-QSFH 389 R G L+D+S++A P + AA+ L+ + H RRIAV+G + ++ S +SF+ Sbjct: 317 RPLPALGGAALLDDSFSAAPPAALAALETLAALPAH---RRIAVVGALSDLPVGSEESFY 373 Query: 390 IDL----AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 +L A L + W G + +I V +T + + L GD Sbjct: 374 RELGTRAASSTDLLILKGDW--GVVTERAARQINPNIAVQVVDTNEAALAALPPDLGPGD 431 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 +V+VK R+I L+++ Sbjct: 432 LVLVKGGAEARMERVIARLVDD 453 >gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu009] gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu009] Length = 432 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 52 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 111 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 112 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 171 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 172 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 223 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 224 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 281 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 282 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 341 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 342 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 392 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 393 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 424 >gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] Length = 392 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 12 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 71 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 72 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 131 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 132 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 183 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 184 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 241 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 242 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 301 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 302 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 352 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 353 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 384 >gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi B31] gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi B31] Length = 464 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 215/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N+ Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNIF 463 >gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis EAS054] gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis EAS054] gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu002] gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis EAS054] gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu002] Length = 391 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 11 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 70 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 71 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 130 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 131 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 182 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 183 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 240 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 241 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 300 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 301 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 351 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 352 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 383 >gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 454 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 209/461 (45%), Gaps = 48/461 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +G ++DSR++ E FFA++G DG DF A +GA V + L +P Sbjct: 26 AHGAAVDSRAVRGGELFFALRG-RLDGADFAPDARARGAVAAVADR-------PLEVPTL 77 Query: 87 GVDDVLGALNKLAV-AARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYN 144 V+D L AL +LA + R + AT++ ITG+VGKTTTK+ L TI S+ +K A G+ N Sbjct: 78 VVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKDALATILRSAGRKITATQGNLN 137 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PLT+ D + + E+G +H G+I FL + RPH+ V+T I+P HL +F ++ Sbjct: 138 NEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIARPHVGVLTAISPVHLDSFGSLQ 197 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY----SFGKSKNADFQL 260 ++A K E+ L + D +F + A+G + +FG + A Sbjct: 198 KLAETKGELARSLPE--------DGAFVSPVGVPEAAVGGGRAFGRHITFG-DEGASLWA 248 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 ++ E V G+S V G H+ + +L G L ++ + LS Sbjct: 249 SGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGALALGVALEECARGLSRL 308 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 RG R + + D+SYNA+PA+M A + ++ + R +AVLG M E Sbjct: 309 RRTGLRGDLLRLRDDILLY---DDSYNASPAAMAAVLRYGARQASSSGRRLVAVLGGMFE 365 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G ++ +H + + + + + G Y+E DG + + + Sbjct: 366 LGPGAREYHREAGRLAAEVGVDLLVCVGEEA------------GWYAEAFDGEKVLYRDA 413 Query: 441 ----------LVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 L GD V+VK S L L E + Sbjct: 414 GEAARELPHLLRPGDYVLVKGSRGVRLDTLTGRLKESLAVV 454 >gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T92] gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis T92] gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis T92] Length = 391 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 11 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 70 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 71 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 130 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 131 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 182 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 183 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 240 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 241 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 300 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 301 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 351 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 352 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 383 >gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T85] Length = 384 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 170/392 (43%), Gaps = 52/392 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 4 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 63 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 64 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 123 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-V 284 D + AK L + + D W E + L + V Sbjct: 124 DPAVAAM-AK---LTAARVVRVSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEV 175 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G+ G H N L + A V+ AL+ P R + T+ID Sbjct: 176 RLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVID 233 Query: 344 ESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++ Sbjct: 234 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDV 293 Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-------------------- 440 S + + G RSI +H+ ++G + +++ Sbjct: 294 SRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALA 344 Query: 441 -----LVDGDVVVVKSSNSCGFYRLINLLLEE 467 L GDVV+VK+SN+ G + + L+ + Sbjct: 345 LLRAELRPGDVVLVKASNAAGLGAVADALVAD 376 >gi|239814044|ref|YP_002942954.1| Mur ligase middle domain protein [Variovorax paradoxus S110] gi|239800621|gb|ACS17688.1| Mur ligase middle domain protein [Variovorax paradoxus S110] Length = 1584 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 124/476 (26%), Positives = 215/476 (45%), Gaps = 36/476 (7%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQG-FVNGI-----------------SIDSRSIAPQEAFF 44 P+WT L + G + P G FVN + + D ++A E + Sbjct: 1099 PVWTAEHLQRITGGRWLVEPPPGWFVNSVVRGPRHLPLLPPPALFVAADYDTLAAHENYS 1158 Query: 45 AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 + D H + +K AG VV + V + P+ +DD + + L AAR Sbjct: 1159 KRLPGNPDRHADLPSLEKKLAGAVVAHA--VEGLAP-DFPLLQLDDPIRGMIALGEAARA 1215 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R K ++ +TG+VGK++T ML L + + + +YN+ +GVP LA + D D I Sbjct: 1216 RFKGLVVGVTGTVGKSSTIAMLRDLLPEAARVHTTVDNYNSRVGVPAMLANLGPDADVCI 1275 Query: 165 FELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-T 222 E+ S L R ++ + RPH+A+IT + + S +E+ A+ K+ IF GLE G Sbjct: 1276 LEMAQSGLWMDRGPISLMARPHVAIITEVGLSQTRQASTLEQTAAFKSRIFLGLEPGGVA 1335 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSM 281 I ++ ++++A AL I+ G +A+ + L + + + +G+S Sbjct: 1336 IVPDHIPCLAQVVRAA--ALTAGAIWVVGPGPDANIRVLDTHPEPGGGCRVRIATEGRSF 1393 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPK---EGRGKRYRCALNQG 337 E + + +N + + + D D A + V P + R R R + Sbjct: 1394 EYLFPIASAGLVRNSALAFAALLAMGFDADAACARMPGVRLPASVMQVRTLRTRAGIEA- 1452 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQSFHIDLAE 394 TLID+S+NA SM+ A+ + + R+I VLG + +G SQ+ H LAE Sbjct: 1453 --TLIDDSWNAEVMSMRNAMEFVRTYRRADDAPVQRKIGVLGRIVNLGRDSQALHRGLAE 1510 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 L I H+ G + L++ +P + + + + L ++ + L DGD+V++K Sbjct: 1511 PLLASGIEHLVTHGAEMRWLREDVPAGLLGPHFDDAEKLADYLGTFLRDGDLVLLK 1566 >gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] Length = 494 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/377 (28%), Positives = 172/377 (45%), Gaps = 38/377 (10%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TI+ +TGS GKT+TK++L L++ T GSYNN +G P T+ R + F + EL Sbjct: 119 TIVGVTGSSGKTSTKDLLAQVLATKGSTVGPPGSYNNELGHPWTVLRAGPESVFLVLELA 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225 +G I L + RP I V+ + AHL F E IA AK E+ E L E G L Sbjct: 179 ARGIGHIAALARIARPRIGVVLGVGSAHLGEFGSRENIAIAKGELVEALPSAEDGGVAVL 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKS-ME 282 N DD + A++ A + +G S++A+ + + + + + QG++ +E Sbjct: 239 NADDPLVLAMAARTKA----RVVRYGMSESAEIRAADVRVDALARPRFTLITPQGEAPVE 294 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + H G H Q L + A A ++ + +R + +I Sbjct: 295 LQVH--GEH--QAHNALAAAAVALECGLSVAQTAEALSRARAASPRRMQVTERADGAVVI 350 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYNANP SM+A + L ++ + G AVLG M E+GE S + H + L Y + Sbjct: 351 NDSYNANPESMRAGLRALVDMADNSGGVSWAVLGPMGELGEDSIALH----DQLGRYAVR 406 Query: 403 HVWLSGFHVLALKDALPRSIH-VHYSETMDGLF--------------LFIQSSLVDGDVV 447 LS +L + D+ RS +H ++G + + L DVV Sbjct: 407 ---LSVKRLLVVGDS--RSAKALHTGAVLEGSWSGEAELVSDWSQAARIVADELGPRDVV 461 Query: 448 VVKSSNSCGFYRLINLL 464 +VK+S S G +++ L Sbjct: 462 LVKASQSEGLWQVAESL 478 >gi|108800226|ref|YP_640423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. MCS] gi|119869354|ref|YP_939306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. KMS] gi|126435849|ref|YP_001071540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium sp. JLS] gi|108770645|gb|ABG09367.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. MCS] gi|119695443|gb|ABL92516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. KMS] gi|126235649|gb|ABN99049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium sp. JLS] Length = 497 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 168/379 (44%), Gaps = 45/379 (11%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R DF + E+ Sbjct: 130 IVGITGSSGKTSTKDLVAAVLAPLGEVIAPPGSFNNELGHPWTVLRADRSTDFLVLEMSA 189 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 H G I L + P IAV+ + AHL F E IA+ K+E+ + + ++G + LN DD Sbjct: 190 RHPGNIAALAAIAPPSIAVVLNVGTAHLGEFGSREAIAATKSELPQAVPESGVVILNADD 249 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGKSMEV--- 283 S + + A + + AD W E + L EV Sbjct: 250 SAVAAMAEVTAA----RVVRVSREPGADI----WADAVTLDELARPRFTLHAAGGEVPVN 301 Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 VH G H N L + A +D AL+ P R + + T+ Sbjct: 302 LAVH---GDHQVSNALCAAAVALECGATLDQVAAALAGAGPVS--RHRMQVTTREDGVTV 356 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++++YNANP SM+A + L+ +S G +R AVLG+M E+G+ S S H + + Sbjct: 357 VNDAYNANPDSMRAGLKALAWMSRGGAAKRRSWAVLGEMAELGDDSISEHDSIGRLAVRL 416 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--------------LFIQSSLVDGD 445 ++S + + G A +H M+G + + L GD Sbjct: 417 DVSRLVVVGTGRSASA--------MHQGAVMEGSWGAEATRVDDADAALALLSDELQPGD 468 Query: 446 VVVVKSSNSCGFYRLINLL 464 VV+VK+SNS G L + L Sbjct: 469 VVLVKASNSAGLGALADSL 487 >gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 156a] gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 156a] Length = 463 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVS--ILTADVD 311 + K S L GK S + V+ G Y + N+ +G ++ + + Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi 80a] Length = 463 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 48/457 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311 + K S L+GK S + V+ G Y + N+ +G + ++ + Sbjct: 262 ENLSIKSFS-------FLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ + + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLDI--QSK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427 + VLG E+GEL+ H DL E +S+ N ++L G L ++D+ L ++S Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E D F SL +V+K S R++N + Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia garinii PBi] gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia garinii PBi] Length = 463 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 126/455 (27%), Positives = 208/455 (45%), Gaps = 44/455 (9%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82 S+DSR I +FA +G DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + DV+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ FE+G S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++ IA K++I + +E T +N D + +AK +K +Y DF+ Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVTNEMN-DYCIYLEKRAKIANPNVKIVY-------FDFES 263 Query: 261 RKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 K S L+GK S + V+ G Y ++ LG +I A + Sbjct: 264 LNIKSFS-------FLEGKFSYDFVYKGFEYS-----ILLLGRHNIFNAIGCINLALFLG 311 Query: 320 FHPKEGRGKRYRCALNQGF--------FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 KE R A +G + ++++SYN N S A +++ + +G++ Sbjct: 312 MREKEIREGLIETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKNMILDLDI--QGKK 369 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSET 429 VLG E+GE + H DL + N ++L G L ++ + L ++SE Sbjct: 370 FMVLGSFKELGEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSE- 428 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F +SL +V+K S R++N + Sbjct: 429 FDKFIDFFLNSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi JD1] Length = 463 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 127/457 (27%), Positives = 218/457 (47%), Gaps = 48/457 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427 + VLG E+GEL+ H DL E +S+ N ++L G L ++D+ L ++S Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E D F SL +V+K S R++N + Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 94a] gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 94a] Length = 463 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 48/457 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311 + K S L GK S + V+ G Y + N+ +G + ++ + Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYS 427 + VLG E+GEL+ H DL E +S+ N ++L G L ++D+ L ++S Sbjct: 369 KFIVLGSFKELGELAYKTHKDLILEAISM-NFDKIFLIGEEFLDVRDSENLVEKCLYYFS 427 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E D F SL +V+K S R++N + Sbjct: 428 E-FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] Length = 508 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 52/472 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSL--SIP 84 DSR I F A+ G DGHDFI AV GA + + D+ V +G + Sbjct: 33 DSRKIREGSLFLALPGARVDGHDFIDQAVAAGATMALAARDVGQPAVVVKPLGKQDSNAD 92 Query: 85 VFGVDD------VLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 F D VL AL KLA V + + ++ +TGS GKT+TK+M+ L + Sbjct: 93 AFAHDPDGSGAAVLEALGKLARYVVDELKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGP 152 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 T A GS+NN IG P T+ + + + + E+ +G + L + P I + + A Sbjct: 153 TVAPKGSFNNEIGHPYTVLQCTPETKYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTA 212 Query: 196 HLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIY---- 248 HL F E IA AK E+ E L E+ G LN DD + + ++ A K ++ Sbjct: 213 HLGEFGSREVIAQAKGELVEALPAAEQGGVAVLNADDDYVTGMAPRTQA---KVVFFSAD 269 Query: 249 -SFGKSKNADF-----QLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLG 301 S + AD+ QL + + S ++ + G++ + G H Q Sbjct: 270 ESSERHATADYRATNVQLDDFARAS----FDLHVPDGRTFPIQLQVYGAH--QVANALAA 323 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + +D A ++ +R G +I++SYNANP SM+A I L+ Sbjct: 324 IAVAVESGIDAEQVAKAMAAHVAASERRMDVQQLTGNIVVINDSYNANPDSMRAGIDALA 383 Query: 362 QISP---HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 + + H + AVLG M E+G+ ++ H L E L I + G H LA Sbjct: 384 RTAAGPTHQDASSWAVLGQMGELGDSAEDEHSSLGEYLVGRGIDRLIAVGESSNVHALAD 443 Query: 415 KDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 K + ++ S D + + + DVV+VK+S + G +R+ + L Sbjct: 444 K---AEELGLNTSRVPDTSTAADLVAAEVRPDDVVLVKASYADGMWRVADSL 492 >gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax delafieldii 2AN] gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax delafieldii 2AN] Length = 475 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 106/381 (27%), Positives = 170/381 (44%), Gaps = 15/381 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++ + F A+KG +D + F+ A GA + + + A+ +P V Sbjct: 33 VHTDTRTLQAGDLFVALKGERFDANAFLADARAGGAVAAIAHGGLEAA----GLPGIEVP 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R + +I ITGS GKTT +M+ L + K ++ G++NN I Sbjct: 89 DSLAALGALAAGWRAQFGLPLIGITGSNGKTTVTQMVASILRAWKGEAAFSTQGNFNNDI 148 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + E+GM+H GEI L + +P +A++ HL + +A Sbjct: 149 GVPLTLLRLRAAHAAAVIEMGMNHPGEIATLAAIAQPTVALVNNAQREHLEFMHTVRAVA 208 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + L G D + L A + + +FG + W+Q + Sbjct: 209 EENGSVLAALPADGVAVFPAGDPYSALWGALA---APRRCVTFGAGGDVRCAQASWRQGA 265 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 M L S + G H N L A +++ + LS F P +GR Sbjct: 266 WAVEMVTPLGALSCSL--QIAGQHNVTNALAAAACALAAGAPLESIARGLSAFTPVKGRS 323 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + T++D+SYNANP SM+AAI VL+ + ++ V+GDM E+G+ Sbjct: 324 RAIGLRVADRQVTVVDDSYNANPDSMRAAIDVLASLP----APQLLVMGDMGEVGDQGPQ 379 Query: 388 FHIDLAEVLSLYNISHVWLSG 408 FH + I H++ G Sbjct: 380 FHAEAGAHARAAGIRHLYALG 400 >gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] Length = 825 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 114/441 (25%), Positives = 200/441 (45%), Gaps = 10/441 (2%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVF 86 I DSRS+ P+E FFA+K DGH++I ++G VV N + Sbjct: 27 ILTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVVTNVPKGYASDYPGANFL 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + L AL +LA R I+ ITGS GKT KE L LS SYN+ Sbjct: 87 KVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLYQLLSPSMFVTRSPRSYNSQ 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPL++ M G+FE G+S GE+ L +++P IAV+T + AH NFS +EE Sbjct: 147 IGVPLSVWLMNEQTQVGVFEAGISMPGEMLALRDIIQPTIAVLTNLGAAHQENFSSMEEK 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K +F E T+ + DD + A+ + ++ K+ A F ++ ++ Sbjct: 207 CREKLILFHDAE---TVIYDGDDEVINKVIAEYPDYKGEKLFWSLKNAEAPFYVKNIEKQ 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + +G+ I QN +++ + S L + K ++ P Sbjct: 264 QSVTVITYIYKGEEDSFSIPFIDNASVQNAIISAVVASKLGLSAEDIDKRMTQLEPV--- 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R + Q TLI++SYN++ S+ A+ +++ H R +L D+ + G+ + Sbjct: 321 AMRLEVKVGQHGCTLINDSYNSDINSLDIALDFMNRRPDHRGRRHTLILSDIYQSGQAPE 380 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + + +++++ + G + D + S + + + + +SL D +V Sbjct: 381 ALYKEVSDLARKRGVVKFIGIGPELCKQHDVIQISEKFFFPNVEEFIASEVFASLRD-EV 439 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 +++K + GF +L LL+++ Sbjct: 440 ILLKGARQFGFDQLTELLVQK 460 >gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi ZS7] gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi ZS7] Length = 463 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIV--SILTADVD 311 + K S L GK S + V+ G Y + N+ +G + ++ + Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 IK L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] Length = 477 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 118/449 (26%), Positives = 201/449 (44%), Gaps = 30/449 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 F+ ++IDSRS F A+ G DGH +I A+ +GA V+++ +L Sbjct: 34 FIRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRT 93 Query: 82 SIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + L AL ++A L + T I ITGS GKTTTKEML LS T Sbjct: 94 GTWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTP 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YN+ +G+PL+L ++ +G+FE+G+ H+GE+ + ++ P+ AV+T I +H Sbjct: 154 GNYNSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHAVLTNIGISHAEKL 213 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSF-GKSKNADF 258 I I + K ++ + F+ D+ + ++ H G I++ G + D Sbjct: 214 GSISAIMTEKGKLLKNARN--GYFMGMDEPSRKAMEHIAGHPQGFWGIHATEGVTGIRDE 271 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 L W + QG + V IG H ++ L + + L + L Sbjct: 272 GLLGWT---------IIYQGTEIHVP--AIGKHSLKDALAAISVARHLGVGEEFIKHGLE 320 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 EGR + + G T+I++ YNA +S + + ++ S G+ + VLGDM Sbjct: 321 KVENLEGRSR-----VVSGDVTVIEDYYNAAASSTTSILDFMAATSWKGDKK--VVLGDM 373 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSETMDGLFL 435 E+G S H + L L + S V+L G + L + YS+ + Sbjct: 374 KELGRYSDRAHEMIGRRLLLASPSSVFLYGTDTKKTWNILRSGGYAGQLVYSDDEHEVNR 433 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ ++ GD+V+VK S + + ++ Sbjct: 434 ALERNIHRGDLVLVKGSRGMAMEKFLPVI 462 >gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 490 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 130/476 (27%), Positives = 220/476 (46%), Gaps = 25/476 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ +L +A G + P G+S DSR+IAP AF A+ G +DGH F+ A Q+G Sbjct: 12 FSLDELARATGGRVLRSGPD--ARGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGS 116 A +V+ ++ G ++ V +D L AL LA A R R +A I+AI GS Sbjct: 70 AAAFIVSREVALPPGGGAVLV---NDGLTALGALARAHRERWRAGAHPGGPRAIVAIGGS 126 Query: 117 VGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT + L+++ + +A G+ NN IG+P+TL + F + E+G + GE Sbjct: 127 AGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQRGE 186 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFE 233 + L + P +AV+T+I H +E++A+ + ++ L G N DD E Sbjct: 187 VAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALGNGDDVKVVE 246 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---HHGIGY 290 L+ A + Y FG+ R+ S + ++ G+++E+V G Sbjct: 247 QLERAGAAR--RITYGFGERARIRIAGRRPVGVRGTS-VRIERGGEALELVVPLLGEAGA 303 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A + + + A +A + P G G+ L G +ID+SYNANP Sbjct: 304 LAAAAAVAVVEEAVGEPLSTERAARAAAGLAPP-GDGRLSVRELPDGTV-VIDDSYNANP 361 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGF 409 SM++++ +++ R + +LG+M E+G L+ + H L E V + + V + G Sbjct: 362 LSMRSSLRTAVEVAEALGKRLVLLLGEMRELGALAAAEHDALGEQVGAARPAALVAVGGE 421 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + A + ++ D Q + GD+V+VK S R++ L+ Sbjct: 422 AARIARAAEAAGVRAWFAGDADAAAARAQEIVERGDLVLVKGSRGIRMERIVEALV 477 >gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 444 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 110/399 (27%), Positives = 176/399 (44%), Gaps = 62/399 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L + + A GS+NN +G P T+ R D+ + E+ Sbjct: 40 TIIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLVLEMS 99 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA K+E+ + + +G + LN D Sbjct: 100 ARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPSSGVVVLNVD 159 Query: 229 DSFFELLKAKSHAL------------GIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQ 275 D + + A G +++ G S + + R + Q +EV Sbjct: 160 DPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFTLHAMNAQGTVEVG 219 Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--C 332 +Q G+ G H N L + A V+ AL P R+R Sbjct: 220 VQ--------LGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPV----SRHRMHV 267 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-----RRIAVLGDMCEMGELSQS 387 T+ID++YNANP SM+A + L+ I+ HG G R AVLG+M E+G+ + + Sbjct: 268 TTRADGVTVIDDAYNANPDSMRAGLQALAWIA-HGAGAGERRRSWAVLGEMAELGDDAVA 326 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF------------ 434 H + + ++S + + G RS+ +H+ M+G + Sbjct: 327 EHDRIGRLAVRLDVSRLVVVGTG---------RSMSAMHHGAVMEGSWGASGERGAVSVA 377 Query: 435 ------LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ L GDVV+VK+SN+ G L + L + Sbjct: 378 DADAALALLRAELRPGDVVLVKASNAAGLGTLADALARD 416 >gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] Length = 824 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 117/443 (26%), Positives = 197/443 (44%), Gaps = 15/443 (3%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84 I DSRS+ P+E FFA+K DGH++I ++G VV +D+ + S P Sbjct: 27 ILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRGVRNFVV-SDVPNNFAS-DYPDAN 84 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L AL +LA R I+ ITGS GKT KE L LS SYN Sbjct: 85 FLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTIVKEWLYQLLSDDMYVTRSPRSYN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ + + GIFE G+S GE+ L +++P IAV+T + AH NF E Sbjct: 145 SQIGVPLSVWLLNKQTEIGIFEAGISEPGEMLALRDIIQPTIAVLTNLGSAHQENFKSKE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 K +F + TI N DD + G K +SF K F ++ + Sbjct: 205 AKCREKLILFHDAK---TIVYNMDDEIINDTVESYNYSGEKITWSFKNPKATMF-IKSVE 260 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + + K + + I N ++ + L D + ++ P Sbjct: 261 KRKNDTVINYNFKDKEGKYILPFIDEASISNSIICAIVTLCLGVSTDVLSRRMAKLEPV- 319 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + Q TLI++SYN++ S+ A+ +++ H R +L D+ + GE Sbjct: 320 --AMRLEVKVGQHGCTLINDSYNSDVNSLDIALDFMNRRPDHKGRRHTLILSDIFQSGEK 377 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ + D++++ + G + A D + +S + + SL D Sbjct: 378 PENLYRDVSDLAYKRGVVKFIGVGPELKAHADQIQIPEKFFFSSVEQLINSEVFRSLRD- 436 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 +V+++K + GF ++ LL+++ Sbjct: 437 EVILIKGARQFGFDQITELLVQK 459 >gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi Bol26] gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi Bol26] Length = 463 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 215/456 (47%), Gaps = 46/456 (10%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADF 258 ++ IA K++I + K IF +N + + L +AK +K +Y DF Sbjct: 212 ELQAIAFEKSKI---IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDF 261 Query: 259 QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADV 310 + K S L GK S + V+ G Y + N+ +G +++ L Sbjct: 262 ENLSIKSFS-------FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMRE 314 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + L ++GR + L + + ++++SYN N S A +++ ++ + + Sbjct: 315 KEIKEGLIETAFQKGRAE----ILTKNGYLILNDSYNGNMGSFIALKNMILDLNI--QNK 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSE 428 + VLG E+GEL+ H DL + N ++L G L ++D+ L ++SE Sbjct: 369 KFIVLGAFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE 428 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D F SL +V+K S R++N + Sbjct: 429 -FDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 463 >gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] Length = 445 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 136/460 (29%), Positives = 200/460 (43%), Gaps = 55/460 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVA 76 P G +IDSR + E F A+ DGH +I A +KGA +V+ ++ Sbjct: 23 PGATFAGFAIDSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPADHQQLID 82 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + +L + V D L AL LA R + + ++A+TGS GKTT L + T Sbjct: 83 AGHALLV----VPDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSACLRTLFPTSAGT 138 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 G+YNNHIG+PL++ P D G+FELGMS GEI L L++P I +IT + AH Sbjct: 139 ---TGNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDALAELLQPQIGLITNVGSAH 195 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + I AK E L + + + D L +A+ + + S G + Sbjct: 196 IGKLGSFAAILEAKLE----LARHCSCLIVDGDGQELLDRARQRH---QDVLSVGFTAGC 248 Query: 257 DFQLRKWKQCSEQSWMEVQLQGK-SMEVVH---HGI--------GYHMAQNMLMTLGIVS 304 Q QS ME++ +G +E+ H HG+ M +N L+ + Sbjct: 249 --------QVFPQS-MELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D L R + +R +G T I + YN+NP S++AA+ S Sbjct: 300 KLGLDQAALQAGLRRVQLPPLRWELHR----RGGNTYIFDCYNSNPGSLRAALEDFS--- 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 H G R+AVLG+M E+G S+ H +V S N V G L D L I Sbjct: 353 -HYPGYRVAVLGEMRELGAFSEREH---RKVASAINCDLVLTYGDEARFLADELGADIAT 408 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H D + + + VV+VK S RL++ L Sbjct: 409 HCPTLED---VVARLANCQNAVVLVKGSRGNQMERLLDAL 445 >gi|46446265|ref|YP_007630.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Candidatus Protochlamydia amoebophila UWE25] gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila UWE25] Length = 841 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 112/446 (25%), Positives = 193/446 (43%), Gaps = 33/446 (7%) Query: 27 VNGISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ I IDSR + A F A+KG DGHDF+ A + GA +V+ I + Sbjct: 25 IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPIFL 84 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V L AL ++A A RL+ II ITG+ GKT K++L LS+ K A GS+N+ Sbjct: 85 LKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPGSFNS 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV L+L + D + I E +S E+ L L+RP ++T I HL+ + I+ Sbjct: 145 QIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTILTPIGKKHLATLNDIDT 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYD--------DSFFELLKAKSHALGIKTIYSFGKSKNAD 257 I ++ KTG + L D ++ F + + F SKN+ Sbjct: 205 ITYETLKLVWATSKTGWVLLPNDIYQQFHLKNNLFSSYIWDRDSKCLPHAIPF--SKNSP 262 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKA 316 F + S E Q+ GY N++ + L+ + K Sbjct: 263 FASHYQLTFPDSSRYEQQMTN----------GYSYFLNLINITSKAAWLSGIKAENIKKI 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++P+ R + ++ + T I+E+ ++P S+ A +P R+I + G Sbjct: 313 FEYYYPEPSRTEIWKSPIGA---TFINETSCSDPHSIDRAFKHFEHAAP--SQRKIFIFG 367 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---FHVL--ALKDALPRSIHVHYSETMD 431 M +Q+++ + + +S ++ H+ L G F L +K P + + + + Sbjct: 368 GMKGNISFAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRCEE 427 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGF 457 L ++Q +L D++++K F Sbjct: 428 ALN-YLQKNLQSQDLILIKGDRKIPF 452 >gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia acidovorans SPH-1] gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia acidovorans SPH-1] Length = 471 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 118/419 (28%), Positives = 192/419 (45%), Gaps = 32/419 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55 + T L+ IQ H +PQ + G + D+R++ + F A+KG +D + Sbjct: 1 MMTLQQALELIQSH----IPQARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDANQ 56 Query: 56 FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 F+ A + GA + + + A + + +P D L AL LA A R R +IA+T Sbjct: 57 FLAQAREAGAAAALAHGGLEAAGLAGIEVP-----DSLAALGALATAWRARFALPLIAVT 111 Query: 115 GSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTT +M+ L + + A G++NN IG+PL+L RM + E+GM+H Sbjct: 112 GSNGKTTVTQMVASILRAHAGEAALATRGNFNNSIGLPLSLMRMTAQHRVAVLEMGMNHP 171 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + +P +A++ H +E +A + L G D++ Sbjct: 172 GEIAELAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSLPADGVAVFPAGDTYT 231 Query: 233 ELLKAKSHALGIKTIYSFGKSKN-ADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L + + A + FG+S + A R W + Q + V +G++ V H G Sbjct: 232 PLWRELAAA---RQCLLFGESADGAQVHARDALWLGDAWQ-FTLVTPEGEA-PVRLHIAG 286 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H +N L + + LSVF P +GR + ++ T+ID+SYNAN Sbjct: 287 RHNVRNALAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNAN 346 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P S+ AAI VL ++ ++ VLGDM E+G+ FH + + I+ ++ G Sbjct: 347 PDSVAAAIEVLRELP----APQLLVLGDMGEVGDQGPQFHAEAGALARSLGIARLFTLG 401 >gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] Length = 504 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 132/497 (26%), Positives = 203/497 (40%), Gaps = 82/497 (16%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V G + DSR + F A+ G DGHD AV+ GA V+ + Sbjct: 23 PSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAASAVEAGAVAVLAAR-------PV 75 Query: 82 SIPVFGVDDVLGALNKLAVAAR------------------------LRSKA-TIIAITGS 116 +P V G A+A L +K T++ +TGS Sbjct: 76 GVPAVVVSPAPGTGPSKAMALEHDTDGSGAAVLAALAKLARASVDDLTAKGLTVVGVTGS 135 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK++L L + A GS+NN +G P T R F + E+ G I Sbjct: 136 AGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTALRADAGTGFLVLEMSARDRGHIA 195 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFE 233 L + P I V+ + AHL F + IA+AK E+ E L + G LN DD Sbjct: 196 SLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGELPESLPSADDGGVAILNADDPLVV 255 Query: 234 LLKAKSHALGIKTIYSFGKSKNA---------DFQLR-KWKQCSEQSWMEVQLQGKSMEV 283 + ++ A + G+S++A D + R ++ + + V+L Sbjct: 256 AMAPRTSA----RVVLVGRSESAHVRATDIVLDERARARFTLTTAAGSVPVEL------A 305 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 VH G H N L + AD+D +ALS GR R T+++ Sbjct: 306 VH---GEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGR--RMDVRDRPDGVTVVN 360 Query: 344 ESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +SYNANP SM+AA+ L ++ G R AVLG+M E+G S H + + Sbjct: 361 DSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPESVVEHDAIGRFAVRLD 420 Query: 401 ISHVWLSGFHVLALKDALPRSIHV------HYSET------MDGLFLFIQSSLVDGDVVV 448 +S + + G A R++H + E + G ++ L GD+V+ Sbjct: 421 VSRLIIVGTGRPA------RAMHQGAVMEGSWGEESILVPDIAGAVALLEKELAPGDLVL 474 Query: 449 VKSSNSCGFYRLINLLL 465 VK+S S G + + + +L Sbjct: 475 VKASQSIGLWEVADTVL 491 >gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 463 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 146/295 (49%), Gaps = 19/295 (6%) Query: 105 RSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHIGVPLTLARMPV 158 R +AT ++A+TGS GKT+ K +L L + YA G+ NN IG+PL + P Sbjct: 57 RDRATRVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPD 116 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D D I+E+G G+I +LT + +PH+A++ IAPAHL + +A K I+ L Sbjct: 117 DADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALP 176 Query: 219 KTGTIFLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEV 274 G +N DD+F FE + +S + + + +G +A+ R+ + + V Sbjct: 177 ADGVAVINADDAFGMWFE-QQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLV 235 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 QG++ ++ G H N L G+ L A + + A + + G++ L Sbjct: 236 TPQGEA-QIALPLPGRHNVLNALAATGLA--LGAGIALPVIAAGLAQARPVAGRQIAQTL 292 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 G LID+SYNANP S+ AAI L+ GEG VLGDM E+G + H Sbjct: 293 PNGAV-LIDDSYNANPGSLDAAIDALAAAP--GEG--WLVLGDMRELGAEGVALH 342 >gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 829 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/388 (27%), Positives = 172/388 (44%), Gaps = 26/388 (6%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +L + G G P+ + ++IDSR + P + F A+ G H DGHDF+ A GA L Sbjct: 7 RELAALLDGELRGTPPEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASL 66 Query: 68 VVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV+ D G P G V D L AL +LA R ++A+TGS GKT Sbjct: 67 VVLRRDRCPDSG----PGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVV 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K LT L+ + + GS+N+ +GVPL + P + G+FE G+S GE+ L ++ Sbjct: 123 KTALTALLAGRFRVASSPGSWNSQVGVPLAVLTAPPGTELGVFEAGISAPGEMERLEAIL 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P V+ + A+L +F A K +F+G++ + + DD L L Sbjct: 183 QPDHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWV-IAPDDPLVNALP-----L 236 Query: 243 GIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + I+ G + + R + Q Q V H + ++L+ L Sbjct: 237 PCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQ-----VTVHTRSRPLVDDLLIALT 291 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L + L + R + +R T+I+++ + +P S++ A++ ++ Sbjct: 292 AAHHLGVPAAEMAEVLQDYTFGPTRMETWRTPEG---ITIINDTASDDPLSVQTALATVA 348 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFH 389 P G GRR+ V G M ++G Q H Sbjct: 349 AF-PEG-GRRLFVFGGMGDLGPCEQREH 374 >gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 196/471 (41%), Gaps = 61/471 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR I E F A+ G +D HDF+ A + G G ++++ +P V Sbjct: 35 VGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISSQDKCPA---DLPAICVS 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACI--GSYNNH 146 + L LA A R + +TGS GKTT KEM+ +I +++ + + + G+ NN Sbjct: 92 NTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIFKAAVGEQHTLVTKGNLNND 151 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+PLTL ++ + ELGM+H GE L + + +IA+I H + + + Sbjct: 152 IGLPLTLLKLRSTDRLAVVELGMNHPGETAQLAVIAQANIALINNAQREHQEFMATVAAV 211 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI---YSFGKSK--------- 254 A ++ L G D F + + A G K I S ++K Sbjct: 212 AEEHSDAIRTLPSDGVAIFPADSEFAGVW--RQAAAGRKVIDFVLSSAQTKASAAVTGCL 269 Query: 255 --NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 N Q++ SEQ +EVQL + +G H +N L + ++ Sbjct: 270 LSNGLVQIK-----SEQGTIEVQL---------NTLGSHNVRNALAASAVGIAAGVSLEK 315 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L F P G R + TLID+SYNANP S++ AI L Q Sbjct: 316 IKQGLESFSPVNG---RMQAKAIDSSRTLIDDSYNANPDSVRVAIDALKQSG----NLSW 368 Query: 373 AVLGDMCEMGELSQSFHID---------LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +LGDM E+G FH + +A++ +L L GF+ + + H Sbjct: 369 LILGDMGEVGNQGPEFHREVGAYAAEQGVAKLFALGEQCQFALQGFN--EVNKGGETTSH 426 Query: 424 VHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFYRLINLLLEE 467 + MD L ++ +L ++VK S R++ LLEE Sbjct: 427 AKHFADMDSLIAQLRDALRSQSSGSNQHLNILVKGSRFMRMERVVQALLEE 477 >gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 496 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 191/382 (50%), Gaps = 13/382 (3%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S++ P F V+D L L ++A+LRS ++AITGS GKT+T+ M+T L +K Sbjct: 92 SVTTPQFIVEDSWKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 148 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195 G++N VPL ++++ + D E+ ++ L + +++L++P IA++T+I A Sbjct: 149 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQPDIAIVTSIGEA 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252 HLS+ + +A KA+IFEGL++ G +N D + F L+ A +YS Sbjct: 209 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 268 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + A F +++ Q E + V G+ + + M N L L + L ++ Sbjct: 269 ASRAVF-VKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 327 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 IK F P +R G FT ID+++NA+ SMK AI+ I P +G + Sbjct: 328 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 387 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430 + +LG + ++G+ ++ H + E L+ +H++ G H L ++ + + +++ Sbjct: 388 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKIDDRLQWFDSL 447 Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452 L +++ L++ +V+ K S Sbjct: 448 QELCNDLETKLIEDSLVLAKGS 469 >gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 301 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 13/310 (4%) Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + G+ ELGMS GE+ + + + +AVIT I H+ E I K I +GL + Sbjct: 2 EIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLTEH 61 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G +FLN DD ELLK + G +TIY +G +N ++ + + + Sbjct: 62 GILFLNGDD---ELLKKTTARDGFETIY-YGTGENCHYRAVDVRLENGYPVFTAVCGDEQ 117 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + V +G H N +++L + S+ ++ A K L+ F + R + Y + G T Sbjct: 118 VPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTGFQNRQQIY----HTGGMT 173 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID++YNA+P SMKA + VL+ I H RR+AVL DM E+G S +H ++ ++ + Sbjct: 174 IIDDTYNASPVSMKAGLEVLNSIE-HSR-RRVAVLADMKELGPDSPRYHYEIGTYIAAHP 231 Query: 401 ISHVWLSGFHVLAL-KDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGF 457 + V + G + + ++ H+ E MD L ++++ L +GD V+ K SNS Sbjct: 232 VDKVAVLGEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKGSNSMEL 291 Query: 458 YRLINLLLEE 467 ++ + LE+ Sbjct: 292 GKVAAVFLEK 301 >gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Segniliparus rotundus DSM 44985] gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Segniliparus rotundus DSM 44985] Length = 491 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 172/382 (45%), Gaps = 36/382 (9%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T++ ITGS GKT+TK+++T L++ T GS+NN +G P T+ R D F + EL Sbjct: 119 TVVGITGSSGKTSTKDLVTQVLATRGATVGPPGSFNNELGHPWTVLRADQDTRFLVLELA 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225 +G I L + +P I V+ + AHL F E IA AK E+ E L + G L Sbjct: 179 ARTIGHIAELAQIAQPRIGVVLGVGSAHLGVFGSRENIAIAKGELVEALPCADDGGVAVL 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEV 283 N DD + +++ A + +G +++AD + + S S+ + QG + V Sbjct: 239 NADDPLVSAMASRTRA----RVVRYGMAESADVRAADVRLDPLSRASFTLITPQGDA-PV 293 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H Q + A A ++ + +R + A +++ Sbjct: 294 TLRVHGEH--QAHNALAAAAVAAECGLSPAQTAEALSAAQAASPRRMQVAERADGVVVVN 351 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +SYNANP SM+A + L ++ G AVLG M E+G+ S H L + Sbjct: 352 DSYNANPESMRAGLRALVGMAHQCGGASWAVLGQMGELGDDSIVLHDQLGRFV------- 404 Query: 404 VWLSGFHVLALKDALPRSIH-VHYSETMDGLF--------------LFIQSSLVDGDVVV 448 V LS ++ + D+ RS +H ++G + + + L DVV+ Sbjct: 405 VRLSVDRLVVVGDS--RSAKALHTGAVLEGSWSGEAVLVPDWQSAARLVAAELGPRDVVL 462 Query: 449 VKSSNSCGFYRLINLLLEEFPA 470 VK+S S G +++ LLE P+ Sbjct: 463 VKASQSEGLWQVAEALLEPRPS 484 >gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] Length = 833 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/405 (25%), Positives = 184/405 (45%), Gaps = 24/405 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T + + I +G P ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YTIETIAERISARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61 Query: 63 KGAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV+ + + S L++ V + L AL KLA R + + +I Sbjct: 62 RGVRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIG 121 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ IGVPL++ +M + IFE G+S + Sbjct: 122 ITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEM 181 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+R L ++++P I ++T I AH NF ++E K +F+ + + N DD F Sbjct: 182 GEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNCD---VVIYNGDDEFI 238 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 AKS + +S + F ++ K + C+ S+ +++ + I Sbjct: 239 SNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNT---FILPFIDD 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +N L L L + + ++ P R + LI++SYN++ Sbjct: 296 ASIENSLNCLAACLYLMLPAEKITERMATLEPV---AMRLEVKEGKNGCLLINDSYNSDL 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 AS+ A+ L + S +R +L D+ E G+ + + + ++++ Sbjct: 353 ASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQL 397 >gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] Length = 496 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 129/465 (27%), Positives = 199/465 (42%), Gaps = 48/465 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGV 88 + DSR +A + F A+ G DGHD+ A+ +GA G++ V ++ + P V Sbjct: 30 VEFDSRKVASGDLFVALSGVKVDGHDYAATAMDQGAAGVLAARPVGVPAV--IVPPATEV 87 Query: 89 DD---------------VLGALNKLA--VAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130 D VL + KLA V +L ++ T+I ITGS GKT+TK+++ L Sbjct: 88 DHHSYATEHDTDGSVAAVLEGMAKLARHVVDKLSARGLTVIGITGSAGKTSTKDIVHTIL 147 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 T A GS+NN IG P T R + + E+ +G I L + PHI V+ Sbjct: 148 ELAGDTVAPPGSFNNEIGHPYTALRCTETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVL 207 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH+ F + IA AK E+ E L G LN DD + + ++ A T++SF Sbjct: 208 NVGTAHMGEFGSRDNIARAKGELVEALPADGIAVLNADDDYVAAMADRTSA----TVWSF 263 Query: 251 G------KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + D +L + + + Q + +V G H N L Sbjct: 264 STLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAA 323 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-KAAISVLSQ 362 D T + L + A N +ID++YNANP SM ++ Sbjct: 324 LAAGVDFATVAQGLRAHTVRSAHRMDVHHAGND--VIVIDDAYNANPESMRAGLRALALA 381 Query: 363 ISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419 + +G G R IAVLG M E+G+ + + H++L ++ I V + G A Sbjct: 382 AAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQGIDLVVVVGTDENARAMINAAA 441 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 R+I + L + L GDV++VK+SN+ YRL Sbjct: 442 AMGLRAIPTADTTQAATEVLKV---LGRGDVILVKASNA---YRL 480 >gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] Length = 833 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 110/440 (25%), Positives = 209/440 (47%), Gaps = 13/440 (2%) Query: 32 IDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +DSR + P +A +FAI G H++GH+F+ +G V+ ++ A + + + V Sbjct: 30 LDSRKLYNPSQALYFAINGEHHNGHEFVAELYARGVRNFVIEENLPAHVKLPNANILKVT 89 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + AL ++A A R + + +I +TGS GKT KE L L+ K SYN+ GV Sbjct: 90 SAVNALQQVAAAHRNQYQIPVIGVTGSNGKTMVKEWLAKLLAEDFKVVKSPKSYNSQTGV 149 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M GIFE G+S E+ L +++P I + T + AH F + + Sbjct: 150 PLSVWQMNKRHTMGIFEAGISAKNEMTALQKVIQPSIGIFTNLGTAHDEGFDNRTQKFAE 209 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCS 267 K ++FE K + ++ +++ S + +++GK++ A +L ++ Sbjct: 210 KWKLFEHC-KAVVCCAEHLQTYHDIVTKTSFS---GQPFTWGKNEQAQLRLLDKQTHLTQ 265 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +Q+ ++VQ QG++ + I +N+L + + +L D + ++ P R Sbjct: 266 QQTQLKVQYQGENHFIQAPFIDEASVENILHCVATMCLLGLSFDKIQRRIARLRPVSMRL 325 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + R N LID+SYN + A +K A+ +S + ++I VL DM + G + Sbjct: 326 ELKRGMRNT---YLIDDSYNNDLAGLKIALDFMS--TQDVNLQKIVVLSDMLQSGLPPEK 380 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + +A++L I V G + + + V + +T D L ++ + + V+ Sbjct: 381 LYQAIAQLLQSKAIDRVIAVGEEIKKHQASFNVLDVVFFDQTKDLLESQVELARLANAVI 440 Query: 448 VVKSSNSCGFYRLINLLLEE 467 +VK + F L++ L ++ Sbjct: 441 LVKGARRFRFEHLVHQLQQK 460 >gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4] gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4] Length = 819 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 116/445 (26%), Positives = 207/445 (46%), Gaps = 25/445 (5%) Query: 22 VPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 VP +N + DSRS++ P E+ FFAI +GH++I Q+ VV ++M Sbjct: 17 VPSVEINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQQNLRYFVV-SEMHPEFE 75 Query: 80 SLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++ VF V+D L AL LAVA R +I ITGS GKT KE L L + Sbjct: 76 KMTDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVVKEWLYQLLHTDYVITR 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 SYN+ IGVPL++ + GIFE G+S E++ L ++RP I + T + AH Sbjct: 136 SPRSYNSQIGVPLSVWALSESTQLGIFEAGISEPHEMKRLQPIIRPTIGIFTNLGDAHQE 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 NFSG+++ K ++F+ E + D+ E+ A+S G+ +S+GKS A Sbjct: 196 NFSGLKQKCEEKLQLFDQSE---VLVYCSDNKLVEISIAQSAFKGV--FFSWGKSDKATV 250 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTAIK 315 Q+ + ++ + + ++ V +N L + ++ L TA++ I Sbjct: 251 QIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENALQCVAVMLYLGLKTAEIAKRIL 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L + + R L +I++SYN++ S+ A+ L+Q + + + +L Sbjct: 311 LLEAVAMRLEVKEGVRDCL------IINDSYNSDLNSLSIALDFLNQQATAKKLSKTLIL 364 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 D+ + G+ S + ++ ++ N+ + G + D + +T D Sbjct: 365 SDILQSGQTSDELYKTVSGLVHNKNVQRIIGIGSEISKHADIFELVDKTFFEQTED---- 420 Query: 436 FIQSSL---VDGDVVVVKSSNSCGF 457 F++S + + +++++K S + F Sbjct: 421 FLKSPILRELKNEIILLKGSRTYHF 445 >gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase [Variovorax paradoxus EPS] gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Variovorax paradoxus EPS] Length = 1592 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 121/499 (24%), Positives = 219/499 (43%), Gaps = 47/499 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNG------------------ISIDSRSIAPQEAFF 44 P+WT L Q G + P G+ ++ D R++A E F Sbjct: 1108 PVWTADQLAQITGGQWLVPPPAGWSVQSVVRLPMHLKVRPGPALFVASDYRTLAAHENF- 1166 Query: 45 AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAA 102 + +D HD + + AG +V + ++ L P+ V D + AL L AA Sbjct: 1167 SHAPEDWDQHDDLPRLHTQCAGAIVQH-----AVEGLPPDFPLLQVPDPIRALLSLGAAA 1221 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R R K ++ +TG+VGK++T M+ L + + + N+ +GVP +A + DVD Sbjct: 1222 RARYKGLVVGVTGTVGKSSTIAMVRDLLPPGARVLTTVENNNSRVGVPGAMASLGPDVDV 1281 Query: 163 GIFELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 I E+ S L R L RPH+A++T + + + + +E+ A K+ F GLE G Sbjct: 1282 CILEMAQSALWMDRGPISLEARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEPGG 1341 Query: 222 -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + +++KA +++ G + +L + S + + +G+ Sbjct: 1342 IAVVSGHIPHLAKVVKAAMRTAA--KVWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRI 1399 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-------SVFHPKEGRGKRYRCA 333 E + + +N + + + D + A + SV + R + Sbjct: 1400 HEYLFPVASIGLVRNSALAFAAIVAMGFDAEEASARMPNVRLPASVMQVEPLRTR----- 1454 Query: 334 LNQGFFTLIDESYNANPASMKAAIS-VLSQISPHGE---GRRIAVLGDMCEMGELSQSFH 389 + TL+D+S+NA SM+ A+S V S +P G R++ VLG + +GE +++ H Sbjct: 1455 -SGALVTLVDDSWNAEVMSMRNAMSFVRSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMH 1513 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 LAE L I+H+ G + L++ +P S+ + + L L++ L DGD+++V Sbjct: 1514 RGLAEPLLASGIAHLVTHGDEMRWLREEVPTSLLGPHFDNAAELTLYLGEYLRDGDLLLV 1573 Query: 450 KSSNSCGFYRLINLLLEEF 468 K + I LL++ Sbjct: 1574 KGDRDRSDFGTIPSLLKKL 1592 >gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] Length = 821 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 177/376 (47%), Gaps = 11/376 (2%) Query: 24 QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 Q ++ I DSRS+ P+E FFA+K DGH +I +G VV TD+ + Sbjct: 21 QATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYARGVRNFVV-TDVPEQLSHY 79 Query: 82 SIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + F V + L AL +LA R + + ++ ITGS GKT KE + LS K Sbjct: 80 ADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTVVKEWIYQLLSPEKVITRSP 139 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 SYN+ IGVPL++ M + GIFE G+S +GE+ L +++P I V+T I AH NF Sbjct: 140 RSYNSQIGVPLSVWMMNEHTELGIFEAGISEMGEMEALQPIIQPTIGVLTNIGWAHQENF 199 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 S ++ K ++F+ + I N D+ +KS + +S ++ F + Sbjct: 200 SSLQGKCMEKLQLFKDCD---VIIYNGDNELISSCVSKSLFTSREIAWSMKDNERPLF-I 255 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K ++ + ++ + G E I +N L L + L + + ++ Sbjct: 256 EKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNALAVALYLMVSPEDIAERMAHL 315 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R + LI++SYN++ AS+ A+ +++ + RR +L D+ E Sbjct: 316 EPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARRTEDKGRRRTLILSDILE 372 Query: 381 MGELSQSFHIDLAEVL 396 G+ S+ + +A+++ Sbjct: 373 SGQPSKLLYRQVADLV 388 >gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] Length = 476 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 118/450 (26%), Positives = 199/450 (44%), Gaps = 30/450 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR++ F ++G + DGH +I A++ GA VV+ D + + + + Sbjct: 41 VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100 Query: 90 D-----VLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 D V L L AAR I ITGS GKTTTKE+L S T + Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFPNLYKIGITGSSGKTTTKEILASIYSKKYNTVSTK 160 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ N+ G+PL++ + + + GIFELGM+ GEI + ++ P+ A+IT I AH+ Sbjct: 161 GNLNSETGLPLSVFEVRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGIL 220 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + IA K EIF + F+ + F + LK H ++++ + ++ Q Sbjct: 221 GTKQAIAEEKKEIFSFFKDDSLGFIP-ECEFTDFLKDIPHG----SVFTVSDNDSSLVQ- 274 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + ++ K E++ G + +N L+ + + L Sbjct: 275 ----KVEDAGVLGSKIFYKGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAV 330 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P GR + + GF T + YNANP SMK+AI I + E + VL M E Sbjct: 331 RPLFGRSQ-----VLHGFVTYFLDCYNANPDSMKSAIEFCDSI--NTECAKHYVLASMLE 383 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLF 436 +G S H + E N +++ G + + + + + I+ + D L Sbjct: 384 LGAESDYEHKKIIEDALKSNADNLYFFGDDICSAFEGMNVSSSKKIYKFKTNQFDALKEQ 443 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ +L D V++K S S RL ++L E Sbjct: 444 LKENLSKDDFVLLKGSRSMELERLESVLKE 473 >gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] Length = 818 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 116/434 (26%), Positives = 196/434 (45%), Gaps = 31/434 (7%) Query: 32 IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IP---V 85 +DSR I A + FFAIKG H+DGH F+ A Q G V + +V + LS P Sbjct: 30 LDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAG-----VRSFVVTKVPELSQFPEANF 84 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V++V+ AL +LA R + +I ITGS GKTT KE L L S+N+ Sbjct: 85 LLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEWLFQLLYPHYAIIRSPRSFNS 144 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL++ + + GIFE G+S GE+ L ++++ I + T + AH FS E Sbjct: 145 QIGVPLSVWGIQAQHELGIFEAGISRKGEMGNLANIIQAKIGIFTMLGEAHNEGFSSKAE 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWK 264 K +F E I+ D + +K LG KT+ +S + NAD + K + Sbjct: 205 KLREKLLLFA--EVDLLIYRRDDATVHRAIK----DLGRKTLAWSLDQHPNADLYVFKTE 258 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + +E + Q + + +N + ++ L + + ++ P Sbjct: 259 TFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHCWAVLLHLGLKSEEIAERMAQLEPVA 318 Query: 325 GRGK----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 R + R C +I+++YNA+ +S++ + + Q HG R + VL ++ + Sbjct: 319 MRMELLDGRNNC-------LIINDTYNADLSSLRLGLQWMRQ-HEHGRNRSL-VLSEILQ 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 G + + +A+++ + +S V G LPR IH + ET + L + Sbjct: 370 SGSSDEKLYRKVAQLIQEHQVSRVIGIGPATAVFATLLPREIHQLHFETTEALLEALPHL 429 Query: 441 LVDGDVVVVKSSNS 454 +V+++K + Sbjct: 430 SFQSEVILIKGARQ 443 >gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] Length = 488 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 41/487 (8%) Query: 4 LWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L +F + ++A+ G + G + ++ DSR++ F + G DGH +IL A Sbjct: 16 LLSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQA 75 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFG---------VDDVLGALNKLAVAARLRSKATII 111 +++GA +V + + + L + V + L AL + A AA ++ +I Sbjct: 76 LEQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTAL-QCAAAAYVKKFPDLI 134 Query: 112 --AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ITGS GKTTTKE++ LS G+ N+ G+PL++ ++ + + GIFE+GM Sbjct: 135 KIGITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMGM 194 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + GEI L +++ P AV+T I AH+ + IA K +IF F+ D Sbjct: 195 NRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFTADCVAFIPAAD 254 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + L T+ +G + + +++ + + + ++ G Sbjct: 255 PYADFLAENCGG----TVVRYGVNTDPVSRIKN------AGLAGTEFLYRQVPILLPLPG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + L + S + D L P GR + + G +++ + YNAN Sbjct: 305 AGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQ-----IIGGPVSVVQDCYNAN 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM+ A+ + + GR+IAVLGDM E+G S+S H+ + + G Sbjct: 360 PDSMEQALDFFASLDIE-PGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIGR 418 Query: 410 HVLALKDALPR-----SIHVH-YSETMDGLF----LFIQSSLVDGDVVVVKSSNSCGFYR 459 V A + L R S+ V ++++ D + + L GDVV++K S R Sbjct: 419 AVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLLKGSRGMRLER 478 Query: 460 LINLLLE 466 L L E Sbjct: 479 LTPYLTE 485 >gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] Length = 824 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 117/468 (25%), Positives = 203/468 (43%), Gaps = 22/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQ 62 +T + I H G ++ + DSRS+A EA FFA++ DGH ++ + Sbjct: 3 YTSEQITALIDAHRFGANSDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYR 62 Query: 63 KGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +G VV+ D + + + V V D L AL LA R R ++ ITGS GK Sbjct: 63 RGVRDFVVSALPDDYASRFPAATFYV--VADPLKALQHLAECHRRRFDIPVVGITGSNGK 120 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T KE L LS SYN+ +GVPL++ + GIFE G+S GE+ L Sbjct: 121 TIVKEWLYQLLSPQLVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALR 180 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAK 238 +++P I V+T AH NF+ +EE + K +F+ + + + DD E ++ Sbjct: 181 PIIQPRIGVMTNTGQAHQENFTSLEEKCAEKLSLFKDAD---VLIYDADDPVVAEGVRQA 237 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S A G + +S K + +RK SE++ + + + QN + Sbjct: 238 SFA-GDQLAWSRTKDEGP-LVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIH 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAA 356 L + L D + ++ P R + QG LI++SYN++ S+ A Sbjct: 296 CLAVCLYLHVDAAVIAQRMARLEPVA-----MRLEVKQGVRGCILINDSYNSDVNSLDIA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + + + R+ +L D+ + G + + +AE+++ + + G + A++D Sbjct: 351 LDFMQRRPDRVGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQD 410 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I + T L + + ++V++K + + F L LL Sbjct: 411 LF--KIDAVFYPTTKALLESGKVGRLRNEMVLLKGARAYNFEALTELL 456 >gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN] gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN] Length = 826 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 203/454 (44%), Gaps = 35/454 (7%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIPV 85 I DSRS+ P+E FFA++ DGH +I +G VV D +SI + Sbjct: 27 ILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGVRNFVVEQLPDAFSSIYKQA-NF 85 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD+ L AL +L R I+ ITGS GKT KE L+ LS SYN+ Sbjct: 86 LQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTMVKEWLSQLLSFDHNVTRSPKSYNS 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL++ + + GI E G+S GE+ L +++P I V+T++ AH NFS IEE Sbjct: 146 QIGVPLSVWLLNESSEIGIIEAGISKRGEMEALQKIIQPTIGVLTSLGAAHQENFSSIEE 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKN 255 K +F + T + DD A+ K I F K+K+ Sbjct: 206 KCKEKLLLF---KDTQALVYQMDD-----------AIAAKCIEDFSYDGTLLGWSEKNKD 251 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 A + K + + S +E Q + + I QN + I L +T Sbjct: 252 AALFVEKISKDTTTSTIEYCWQTATKGKFTLPFIDDASIQNCITCAAISLYLGMKPETLA 311 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 + + + P R Q TLI++SYN++ S+ A+ +++ + R + Sbjct: 312 ERMPMLEPV---AMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDQQKRARTLI 368 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGL 433 L D+ + G+ + + D+AE++ I G ++ ++ ++ E + D + Sbjct: 369 LSDILQSGQTEKQLYCDVAELVQKRGIKKFIGIGSALMRQQEVFDGVEERYFFENVADFI 428 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +SL D +V+++K + S GF +L LL+++ Sbjct: 429 NSKVFNSLAD-EVILLKGARSFGFDQLTELLVKK 461 >gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 486 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 144/489 (29%), Positives = 216/489 (44%), Gaps = 42/489 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G IG P V G + DSR F A+ G DGH + A G Sbjct: 8 SLSQIAAAVGGRLIG--PDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGSAGALG 65 Query: 65 A-GLVVVNTDMVAS------IGSLSIPVFG---VDDVLGALNKLA---------VAARLR 105 A G +V + + S G P G V+D + AL LA AA Sbjct: 66 AVGAIVSDLEAARSGLIQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRTAADRG 125 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ + + Sbjct: 126 ERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVL 185 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G S G I +LT + +A + I AH+ F IE +A+AKAEI GL G L Sbjct: 186 EMGASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPEGVAIL 245 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQG--KS 280 N DD+ + + + +F ++ LR + + +S ++ L G Sbjct: 246 NADDARAAAMAGLA----PAQVLTF-SAQGGPADLRAERIVLDEAARSAFDLHLPGLDGP 300 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQG 337 V G H N L G+ + + + ++S+ P R + G Sbjct: 301 RRVQLAVAGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESP-----HRMDVSELSG 355 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 LID+SYNAN SM AA++ L ++ G RR+ V+ +M E+GE S + H E+ + Sbjct: 356 DLLLIDDSYNANIDSMTAALAALPALA--GGRRRVVVVSEMLELGESSAADHARTGELAA 413 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + + G AL A R + V + I + L DGD V+VK SN G Sbjct: 414 EAGAAMLIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLVKGSNGSGA 473 Query: 458 YRLINLLLE 466 +RL + L E Sbjct: 474 WRLADHLKE 482 >gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus ruber DSM 1279] gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus ruber DSM 1279] Length = 439 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 120/439 (27%), Positives = 200/439 (45%), Gaps = 51/439 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P AFFA+ G G +F AVQ GA VV + + ++ ++ P + Sbjct: 36 DSRQVGPGVAFFALPGARTHGREFGQQAVQAGAAFVVSDLNHPGAV-QVARPERAL---- 90 Query: 93 GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LAV LR + +++A+ GS GKTTTKE L L+ A G+ NN G Sbjct: 91 -----LAVGRALRDQFRGSVLAVGGSSGKTTTKECLAQGLA----WPAPEGNLNNAPG-- 139 Query: 151 LTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 LT ++ G + ELG+ L E+ LT+L RP I V+T + HL +E + Sbjct: 140 LTRFFFHLEPAEGCVVELGIDRLLEMAELTYLARPDIGVLTGLGVEHLEGLGNLENVVRE 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 ++ + + S L + + L + + ++G + DF+ + E Sbjct: 200 ESWLLQ-------------VSPLRLASVQAAELLDLPNLVTYG-IEAGDFRAEGVEMGLE 245 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +GK + + + G+G M L L + +L + I+ L+ GR + Sbjct: 246 AT--RFRFEGKVVHLPYPGVGPVM--GALAALAVARMLDKPLAQTIERLAALRLPPGRMQ 301 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R R G I ++YNANP S KA ++ L Q P GR+ VLG M E+G+ + Sbjct: 302 RLRL----GGIDFIHDAYNANPLSFKAGMAFL-QAQP---GRKWLVLGRMAELGQEALKH 353 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H++ A + + + + V++ F +A ++ ET++ + + GD+V Sbjct: 354 HLEAARLAAAVSPNLVFVGPFAKQQAAEAGGTAV-----ETIEEAVQLLFGKVQPGDLVY 408 Query: 449 VKSSNSCGFYRLINLLLEE 467 +K+S S G RL+ L E Sbjct: 409 LKASRSVGLERLLELWPRE 427 >gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas testosteroni KF-1] gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas testosteroni KF-1] Length = 475 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 114/420 (27%), Positives = 185/420 (44%), Gaps = 31/420 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55 + T L+ IQ H +PQ + G + D+R++ + F A+KG +D HD Sbjct: 1 MMTLAKALELIQTH----IPQARLVGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHD 56 Query: 56 FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 F+ A GA V + + A + + +P D L AL LA A R + +IA+T Sbjct: 57 FLSQAQAAGAVAAVASHGLETAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111 Query: 115 GSVGKTTTKEMLTIAL-----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 GS GKTT +M+ L + + A G++NN IG+PL L RM + E+GM Sbjct: 112 GSNGKTTVTQMIASVLRAHVGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGM 171 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI L + +P +A++ H +E +A + L + G D Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLGFLPRDGVAIFPAGD 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 ++ L + ++ FG++ ++ +W + + V H Sbjct: 232 TYTPLWTELAAG---RSCLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIA 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H +N L + K LS F P GR + +N T++D+SYNA Sbjct: 289 GRHNVRNALAAAACAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+ AAI+VL+++ ++ VLGDM E+G+ FH + + I+ V+ G Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDNGPQFHAEAGALARQSGIAQVFALG 404 >gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] Length = 896 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 196/446 (43%), Gaps = 27/446 (6%) Query: 33 DSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85 DSRS+ A + FFA+K DG FI ++G VV N D + + Sbjct: 102 DSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRGVFNFVVEHLPDNYDTLYP----DVNF 157 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + LGAL +LA R ++ ITGS GKT KE L LS SYN+ Sbjct: 158 LKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNS 217 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL++ M G+FE G+S GE+ L +++P I V+T I AH NF+ +EE Sbjct: 218 QIGVPLSVWLMNELTQIGVFEAGISMPGEMASLRSIIQPTIGVLTGIGTAHQENFASMEE 277 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 S K ++F E + N DD +S G + +S K +NA ++ ++ Sbjct: 278 KCSEKLKLFHDSE---AVIYNADDDLIARCMEQSGYKGRRMGWS-QKDRNAPLFVKTIEK 333 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + GK + I N + + + L D + + P Sbjct: 334 KENTTTVTYVYNGKEGQYSIPFIDSASVVNSITCMAVSLYLGLSADDLDRRMQRLEPV-- 391 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R Q TLI++SYN++ S+ A+ +++ H R +L D+ + GE Sbjct: 392 -AMRLEVKTGQHGCTLINDSYNSDVKSLDIALDFMNRRPDHKGRRHTLILSDIYQSGESP 450 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS----SL 441 + + +++ ++ + G + A D + + + E++D FI S SL Sbjct: 451 RELYREVSTLVQGRGVEKFIGIGPEISAQSDEI-KVREKFFFESVDS---FISSEVFRSL 506 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 D +V+++K S S GF L LL ++ Sbjct: 507 RD-EVILLKGSRSFGFDLLTELLAQK 531 >gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verminephrobacter eiseniae EF01-2] gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Verminephrobacter eiseniae EF01-2] Length = 475 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 157/356 (44%), Gaps = 17/356 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R++ + F A++GP +D H F+ A + +P V Sbjct: 49 VHTDTRTVQAGDLFVALRGPRFDAHAFLAQARAG----GAAAALAQGGLADAGLPGIEVP 104 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHI 147 D L AL LA R + +IA+TGS GKTT +M+ L + + A G++NN I Sbjct: 105 DSLAALALLAAGWRAQFDLPLIAVTGSNGKTTVTQMVAAILRAWQGDAALATQGNFNNAI 164 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLTL R+ + ELGM+H GEI L + +P +A++ HL + +A Sbjct: 165 GLPLTLLRLRARHTVAVVELGMNHPGEIAALAGIAQPGVALVNNAQREHLEFMHSVAAVA 224 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 +F L G DD + L + + + FG D +W Sbjct: 225 RENGSVFASLPAHGVAVFPADDDYQALWQELAAG---RECLRFGAGGAVDGADARW---V 278 Query: 268 EQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + +W + + + H G H N L A + + LS F P GR Sbjct: 279 DGAWALTLATPQGPVTTRLHIAGRHNVGNALAAAACALAAGAPLAALAQGLSGFSPVPGR 338 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + + +++D+SYNANP S++AAI++L+++ R+ VLGDM E+G Sbjct: 339 SRSFSIRHAGRQISVVDDSYNANPDSVRAAIALLAELP----APRLLVLGDMAEVG 390 >gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] Length = 842 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 109/423 (25%), Positives = 188/423 (44%), Gaps = 33/423 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T + + I +G P ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YTIETIAERIGARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYS 61 Query: 63 KGAGLVVVNTDMVASI----------------GSLSIPVFG---VDDVLGALNKLAVAAR 103 +G VV+ + +I S IP V + L AL KLA R Sbjct: 62 RGVRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHR 121 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 + + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + Sbjct: 122 EQFQIPVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELA 181 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 IFE G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + Sbjct: 182 IFEAGISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VV 238 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSM 281 N DD F AKS + +S + F ++ K + C+ S+ +++ M Sbjct: 239 IYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNTFM 298 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 I +N L L L + + ++ P R + L Sbjct: 299 LPF---IDDASIENSLNCLAACLYLMLPAEKITERMTTLEPV---AMRLEVKEGKNGCLL 352 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 I++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + ++++++ I Sbjct: 353 INDSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLINSRGI 412 Query: 402 SHV 404 + Sbjct: 413 ERI 415 >gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] Length = 825 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 125/459 (27%), Positives = 199/459 (43%), Gaps = 52/459 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGV 88 DSRS+ P+E FFA+K DGH++I ++G VV TD+ + S V Sbjct: 30 DSRSLCFPEETLFFALKTKRNDGHNYIADLYRRGVRNFVV-TDVPNNYDSAYSGANFLKV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL +LA R I+ ITGS GKT KE L +S SYN+ +G Sbjct: 89 IDTLEALQRLAERHRDAFDIPIVGITGSNGKTMVKEWLYQLMSPDMYVTRSPRSYNSQVG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ M GIFE G+S GE+ L +++P IAV+T + AH NF EE Sbjct: 149 VPLSVWLMDKQTRLGIFEAGISEKGEMSALRDIIQPTIAVLTNLGSAHQENFESAEEKCR 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 KA +F + TI + DD + A G + +S +D Q + + E Sbjct: 209 EKAILFHDAK---TIVYHADDKIVAGVVASLDYRGERLYWS-----TSDRQAPMYIKAVE 260 Query: 269 QSWMEVQLQGKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + ++ ++ G I N ++ I L D D + + Sbjct: 261 K-----KETAATITYIYKGGIENWYSIPFIDDASVTNSIVCATIALHLGLDADKLDERML 315 Query: 319 VFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 P KEG R+ C TLI++SYN++ S+ A+ +++ H RR Sbjct: 316 QLEPVAMRLEVKEG---RHGC-------TLINDSYNSDFNSLDIALDFMNRRPDHQGRRR 365 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 +L D+ + G + D+ E+ + + + G + + D IH Sbjct: 366 TLILSDIFQSGVEPARLYRDVGELAAKRGVEKLIGIGPSISSYAD----EIHTQEKYCFS 421 Query: 432 GLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEE 467 + FI S + G +V+++K + GF R+ LL+++ Sbjct: 422 TVADFIHSPVFKGLRNEVILLKGARRFGFDRITELLVQK 460 >gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pyogenes M49 591] Length = 342 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 22/342 (6%) Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 +TY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + Sbjct: 6 QTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGE 65 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL F ++IA K +I +G+ G + D L + + FG + Sbjct: 66 AHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPEN------QMVIRFGNQQ 119 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 D + + S V S+ + G + A N ++ + +L + I Sbjct: 120 EIDVTGIQEDKDSLTFTTNVLATPVSLPLP----GKYNATNAMVAAYVGKLLAVTDEDII 175 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL G ++ A N ++ + YNANP +M+ + + I+ + G++IAV Sbjct: 176 AALQTVT-LTGNRTEWKKAANGA--DILSDVYNANPTAMRLILETFANIAKNPGGKKIAV 232 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHY----- 426 L DM E+G+ S H L + L+ NI + G H+ L + + VHY Sbjct: 233 LADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAE 292 Query: 427 -SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + ++Q+ L D +++K S+S +L++ L+ + Sbjct: 293 QEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLVTD 334 >gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni CNB-2] gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni CNB-2] Length = 475 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 113/420 (26%), Positives = 182/420 (43%), Gaps = 31/420 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55 + T L+ IQ H +PQ + G + D+R++ + F A+KG +D HD Sbjct: 1 MMTLAKALELIQTH----IPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHD 56 Query: 56 FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 F+ A GA + + + A + + +P D L AL LA A R + +IA+T Sbjct: 57 FLPQAQAAGAVAAIASHGLEAAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111 Query: 115 GSVGKTTTKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 GS GKTT +M+ L + + A G++NN IG+PL L RM + E+GM Sbjct: 112 GSNGKTTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGM 171 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI L + +P +A++ H +E +A + L K G D Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGD 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 + L S + FG++ + + +W + + V H Sbjct: 232 EYTPLWTELSAG---RPSLMFGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIA 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H +N L + + LS F P GR + + T++D+SYNA Sbjct: 289 GRHNVRNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+ AAI+VL+++ ++ VLGDM E+G+ FH + + I+H + G Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDDGPQFHAEAGALAQQAGIAHFFALG 404 >gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] Length = 824 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 115/444 (25%), Positives = 193/444 (43%), Gaps = 17/444 (3%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 I DSRS+ P+E FFA+K DGH +I ++G V +S Sbjct: 27 ILTDSRSLCFPEETLFFALKSDRNDGHRYIPELYRRGVRNFAVEVLPDSSSSYTDANFLK 86 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L AL LA R II ITGS GKT KE L L + SYN+ I Sbjct: 87 VADTLKALQMLAKKHRETFHIPIIGITGSNGKTMVKEWLYQLLMPERFVTRSPRSYNSQI 146 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S E+ L ++RP I V+TTI AH NF+ IEE Sbjct: 147 GVPLSVWLLNENTQIGLFEAGISRPKEMDALREIIRPTIGVLTTIGTAHQENFASIEEKC 206 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +F + TI D++ L ++ G +S K +NA + + ++ + Sbjct: 207 REKLRLFRHAQ---TIVYCTDNALTARLISEESLEGEPIAWS-TKDENAQLYVSRIEKQA 262 Query: 268 EQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + + + + I +N + + L K ++ P Sbjct: 263 EHTTVSYRYKNHIEGQYTLPFIDDASVENSITCTAVALYLGIAPAALAKRMAHLEPV--- 319 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R Q TLI++SYN++ S+ A+ +++ H +R +L D+ + G Sbjct: 320 AMRLEVKEGQHGCTLINDSYNSDIHSLDIALDFMNRRPDHKGRKRTLILSDIEQTGRKPA 379 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--- 443 + +++ + + + G + A D++ + + + FI S D Sbjct: 380 DLYREVSHLAAKRRVEKFIGIGRQLCAHADSIGITDKCFFPDCES----FIHSEAFDKLR 435 Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467 +V+++K + GF RL +LL+++ Sbjct: 436 NEVILIKGARRFGFDRLTDLLVKK 459 >gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia recurrentis A1] gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia recurrentis A1] Length = 465 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 115/458 (25%), Positives = 208/458 (45%), Gaps = 35/458 (7%) Query: 24 QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 Q V+ S+DSR I + + +FA KG DG F+ + + G V + D Sbjct: 26 QKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKYLIDIGVKCFVCSKDREL--- 82 Query: 80 SLSIPVFGVD---------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 L I D +V+ L LA +++ IAITGS GKTTTKEML L Sbjct: 83 -LCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAITGSNGKTTTKEMLYSIL 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE+ + ++ P I ++T Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIY 248 ++ AH+ F ++ +A K++I + T + LN + L+ AKS I Y Sbjct: 202 NVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQYVYLEEIAKSVNPNINIFY 259 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + + Q+R + +++ + +G ++ G H N + + + L Sbjct: 260 ----FEFHNLQIRSFSFINDKFSYDFTYKGCDYSILLP--GKHNICNAISCINLALFLGL 313 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + L ++GR + R + ++++SYN N +S A ++ + + Sbjct: 314 SENEIRNGLLHADFQKGRAELVRIKD----YLVLNDSYNGNLSSFMALKEMILDLEI--K 367 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHY 426 ++I VLG E+G+ + H E + L N ++L G A+K D+L + + Y Sbjct: 368 DKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKIFLIGEEFQAVKRVDSLSSNSCLFY 427 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++L G + +K S + R+++ L Sbjct: 428 FNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465 >gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni S44] gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni S44] Length = 475 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/420 (26%), Positives = 182/420 (43%), Gaps = 31/420 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHD 55 + T L+ IQ H +PQ + G + D+R++ + F A+KG +D HD Sbjct: 1 MMTLAKALELIQTH----IPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHD 56 Query: 56 FILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 F+ A GA + + + A + + +P D L AL LA A R + +IA+T Sbjct: 57 FLPQAQAAGAVAAIASHGLEAAGMAGIEVP-----DTLLALGALARAWRAQFDLPLIAVT 111 Query: 115 GSVGKTTTKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 GS GKTT +M+ L + + A G++NN IG+PL L RM + E+GM Sbjct: 112 GSNGKTTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGM 171 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI L + +P +A++ H +E +A + L K G D Sbjct: 172 NHPGEIAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGD 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 + L S + FG++ + + +W + + V H Sbjct: 232 EYTPLWTELSAG---RPSLMFGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIA 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H +N L + + LS F P GR + + T++D++YNA Sbjct: 289 GRHNVRNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+ AAI+VL+++ ++ VLGDM E+G+ FH + + I+H + G Sbjct: 349 NPDSVAAAIAVLAELP----APQLLVLGDMGEVGDNGPQFHAEAGALAQQAGIAHFFALG 404 >gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia duttonii Ly] gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia duttonii Ly] Length = 465 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 117/459 (25%), Positives = 208/459 (45%), Gaps = 37/459 (8%) Query: 24 QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 Q V+ S+DSR I + + +FA KG DG F+ + + G V + D Sbjct: 26 QKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKYLIDIGVKCFVCSKDREL--- 82 Query: 80 SLSIPVFGVD---------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 L I D +V+ L LA +++ IAITGS GKTTTKEML L Sbjct: 83 -LCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAITGSNGKTTTKEMLYSIL 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE+ + ++ P I ++T Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGEMNIIAEILNPEIVIVT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTI 247 ++ AH+ F ++ +A K++I + T + LN + E + AKS I Sbjct: 202 NVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQHVYLEEI-AKSVNPNINIF 258 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y + + Q+R + +++ + +G ++ G H N + + + L Sbjct: 259 Y----FEFHNLQIRSFSFVNDKFSYDFTYKGCDYSILLP--GKHNICNAISCINLALFLG 312 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L ++GR + R + ++++SYN N +S A ++ + Sbjct: 313 LSENEIRNGLLHADFQKGRAELVRIKD----YLVLNDSYNGNLSSFMALKEMILDLEI-- 366 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVH 425 + R+I VLG E+G+ + H E + L N V+L G A+K D+L + + Sbjct: 367 KDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKVFLIGEEFQAVKRVDSLSSNSCLF 426 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y + ++L G + +K S + R+++ L Sbjct: 427 YFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465 >gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510] gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510] Length = 821 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S E +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKEKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 + + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Coraliomargarita akajimensis DSM 45221] gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Coraliomargarita akajimensis DSM 45221] Length = 457 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 127/481 (26%), Positives = 207/481 (43%), Gaps = 49/481 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W L GH +G + D+R + + F A+ DGHDF+ A+ G Sbjct: 4 WDPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGARDGHDFVEQALAAG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG +V+ + L IP V+D L A+ + A R ++ +TGS GKT+TKE Sbjct: 64 AGSALVSRPL-----DLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVR 183 ML + L +A G++NN IGVP+TL + + +F + E G++ GE+ L ++ Sbjct: 119 MLRLVLGE-SVAHATAGNWNNRIGVPMTLFGLDSERQEFAVIEAGINQPGEMNHLGEMIA 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-----FLNYDDSFFELLKAK 238 + V+T I AHL +E IA+ K+++ + + LNY + F +A+ Sbjct: 178 ADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARPSALLILPAELLNY--AAFNRYRAR 235 Query: 239 SHAL---------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A+ G+ + S+ + + L + E QL +S GI Sbjct: 236 AVAVVEAGSPVPEGVLSTVSY-RFEGPRIVLSGEYFAAVGGRCEFQLASQS-----RGI- 288 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N + + ++L + + + P RG+ A Q F+ + YNAN Sbjct: 289 ---RRNAALAMVTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQ-FYV---DCYNAN 341 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PASM A+ + P E R VLG M E+G + H + E V+L G Sbjct: 342 PASMADALDAFAHSVPD-EVPRCYVLGAMNELGADAPRLHRESIEGHDFRPQDRVYLVGP 400 Query: 410 HVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVD-GDVVVVKSSNSCGFYRLINLLL 465 L AL ++ + + E ++ +S + D + +K S S YRL LL Sbjct: 401 QALLAGYAQALEKAGSQLSFGEKVENF----ESEIADFKGALFLKGSRS---YRLEQLLP 453 Query: 466 E 466 E Sbjct: 454 E 454 >gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056] gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056] Length = 828 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 180/407 (44%), Gaps = 15/407 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T D+ + I IG P ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YTIEDIARIIGARRIGDTPAA-IDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYT 61 Query: 63 KGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV+ + + + + + + V + L AL KLA R R + +I ITGS Sbjct: 62 RGVRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSN 121 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ IGVPL++ +M + I E G+S GE+R Sbjct: 122 GKTIVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEAGISEPGEMRA 181 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++++P I ++T I AH NF ++E K +F+ + + N DD F Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFINNCVG 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 KS L + I K + K ++ + + + + I +N L Sbjct: 239 KS-MLSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASIENSL 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L L + + ++ P R + LI++SYN++ S+ A+ Sbjct: 298 NCLAACLYLMLPAEQITERMAKLEPI---AMRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 L + S +R +L D+ E G+ + + + +A++++ I + Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERI 401 >gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21] gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21] Length = 820 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 120/461 (26%), Positives = 205/461 (44%), Gaps = 24/461 (5%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILH 59 N ++T D+ + S I P VN ++ DSR I A FFA+ G DGH ++ Sbjct: 3 NKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQE 61 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + G VV + V L+ V D L AL +LA R + +IAITGS GK Sbjct: 62 AYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGK 121 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T KE L LS SYN+ +GVPL+L +M + I E G+S +GE+ + Sbjct: 122 TIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIE 181 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN--YDDSFFELLKA 237 +V+P I ++T I AH F+ +E K ++F+ +K I N Y DS E + Sbjct: 182 RMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLFKDADK---IVYNPTYVDSAIE-VPG 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + H +++ K A ++ K+ Q +E +S + + +N+ Sbjct: 238 RHH-------FTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENL 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + + + + P R + + N ++ID+SY+ + +S+ A Sbjct: 291 VCCWALMLAIGYEAMVIVDRVKRLLPVSMRLELKKGINNN---SIIDDSYSNDLSSLLIA 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L Q H R++ +L D+ +G+ + + +A +L + + G H L Sbjct: 348 LDFLKQQQQH--SRKMLILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKH-LRQHA 404 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 AL R + + +T + L I + +++K S GF Sbjct: 405 ALFR-MDTQFFDTTEQLLTNIPKLEIRDSTILIKGSRVFGF 444 >gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] Length = 825 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 182/386 (47%), Gaps = 29/386 (7%) Query: 27 VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-I 83 + +S+DSRS+ E+ FFA+KG ++DGHD++ ++G VV T + A LS Sbjct: 32 ITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVRNFVV-TGLRAGFLPLSGA 90 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F VD+VL AL +LA R + KA ++ ITGS GKT KE L LS Y SY Sbjct: 91 NFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIVKEWLYQLLSDEPGIYRSPRSY 150 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ +GVPL+L M V I E G+S GE+ L ++RP I + T + AH NF Sbjct: 151 NSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQAMIRPEIGIFTHLGDAHGENFESR 210 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ + KA +F + + + + + ++ K I+ G KNA ++ + Sbjct: 211 QQKLAEKAILF----RDCRCIIGREGEALDYIASRLRPDVKKMIW--GSGKNATVRVEEK 264 Query: 264 KQCSEQSWMEVQLQGKSMEV---VHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKAL 317 + + + V + + + + N + L GI + A+ ++ L Sbjct: 265 GSTAHERLVAVGYEHVAFTLSIPFPDEASFENCMNAVCVLLLEGISPVFIAERVARLQPL 324 Query: 318 SV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++ K+G RC LI++ YN++ AS + A++ L+ E ++ +L Sbjct: 325 AMRMEIKDGIN---RC-------VLINDYYNSDAASFQLALNTLAMQDAGRE--KVVILS 372 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNIS 402 D + G + + ++A +L +S Sbjct: 373 DFVDTGTGERELYREVALLLRKAKVS 398 >gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 453 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 184/418 (44%), Gaps = 20/418 (4%) Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110 Y+ + + A++ GA + MV +P V++ AL L R + + Sbjct: 52 YNPNPDVEQAIKNGAAAI-----MVPCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIPV 106 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+TG+ GKT+TK+++ + LS T+ + + N+ IGVP+T ++ + E+G+ Sbjct: 107 IAVTGTSGKTSTKDLIALVLSERFNTHKTLSNVNDLIGVPMTTLQINDTHQISVIEIGLR 166 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G I+ +VRP I VIT+I AH+S+F E I AK E+ +K + +N DD Sbjct: 167 SYGHIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKAKMEVATYFDKNDILIINGDDP 226 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIG 289 +K K + I + ++ + + E+ + +G+ G Sbjct: 227 LLSTIKEKPYK-----IIRISLNGKGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPG 281 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N + + I + +VD + + F P R + N +I + Y + Sbjct: 282 IHNVYNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNA---KIILDCYTSE 338 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSG 408 SMKA I+VL G ++IAVLG M G L++ H ++ V+ +I + G Sbjct: 339 LDSMKAGINVLKSF---GGNKKIAVLGSMYGCGNLTEEIHREIGRYVIGKCDI--LVTVG 393 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + + ET + ++++ + DV+++ ++ N LL+ Sbjct: 394 GNARYINEEAKDKLEGKHCETKEEACSYLKNIIQKDDVILINGGRILKLEQIANYLLQ 451 >gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010] gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010] Length = 826 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 119/450 (26%), Positives = 197/450 (43%), Gaps = 33/450 (7%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85 DSRS+ P+E FFA+K DG+ +I +G VV N DM+ + Sbjct: 30 DSRSLCFPEETLFFALKSERNDGYHYIPELYSRGVRNFVVEAIPENWDMLYPQSNF---- 85 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + AL +LA R +I ITGS GKT KE L LS K SYN+ Sbjct: 86 LEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTVVKEWLYQLLSPNKVVTRSPRSYNS 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL++ + + G+FE G+S GE++ L +++P I V T++ AH NF+ +EE Sbjct: 146 QIGVPLSVWLLNEQTEVGVFEAGISERGEMKALREIIQPTIGVFTSLGEAHQENFASLEE 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLR 261 K +F T I D+ + L K+ LG K NA ++ Sbjct: 206 KCMEKLCLF---RDTNAIVYPLDEELVVRCIKTLNYKNTILGWSK-----KDSNATLFVK 257 Query: 262 KWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + K+ + + V QGK I +N + + I L +V T + + Sbjct: 258 EIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSITSAIICLHLGVEVKTLAERMPQL 317 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P R Q TLI++SYN++ S+ A+ +++ H +R +L D+ + Sbjct: 318 EPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRKRTLILSDIFQ 374 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 GE ++ + +A + + G ++ + A + ++ T+ FI S Sbjct: 375 SGEDEKTLYQRVAFLAEKRGVEKFIGIGEGLIRQRKAFNKFGKKYFFATVGS---FISSE 431 Query: 441 L---VDGDVVVVKSSNSCGFYRLINLLLEE 467 + +V+++K + GF +L LL+ + Sbjct: 432 AFRELRDEVILLKGARQFGFDQLTELLVNK 461 >gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudonocardia dioxanivorans CB1190] gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudonocardia dioxanivorans CB1190] Length = 488 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 165/367 (44%), Gaps = 29/367 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++ +TGS GKT+TK++L L+ + T A GS+NN +G P T R + EL Sbjct: 130 VVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELGHPWTALRADASTRHLVLELSA 189 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLN 226 G I L + P I V+ + AHL F E IA AK E+ E L G LN Sbjct: 190 RGPGHIAALCRVAPPRIGVVLNVGRAHLGEFGSPEAIAQAKGELVEALPAGGDGGVAVLN 249 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VV 284 DD + ++ A + S G+S A +R SE +L + E V Sbjct: 250 ADDPAVIGMAPRTAA----RLVSVGRSAGA--TVRAVDVGSEAGRARFRLVSPAGEADVA 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLI 342 +G H N L + L A D+ +L P R+R A T++ Sbjct: 304 LRLVGTHHVGNALAAAAVALELGATPDSVAASLGAAGPV----SRWRMEVADRADGVTVV 359 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +++YNANP SM+AA++ L+ + G GRR AVLG M E+G + H ++A + Sbjct: 360 NDAYNANPESMRAALTALTDL---GRGRRTWAVLGRMAELGAQEAAAHAEVAAAAGELGV 416 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +LA+ + S H ++ +++ + GDVV+VK+S + G R+ Sbjct: 417 G-------TLLAVGEPGYGSAARHVADPAA-ALALLRAEVTPGDVVLVKASRAVGLDRVA 468 Query: 462 NLLLEEF 468 LL++ Sbjct: 469 AALLDDL 475 >gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12] Length = 511 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 190/382 (49%), Gaps = 13/382 (3%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S++ P F V+D L L ++A+LRS ++AITGS GKT+T+ M+T L +K Sbjct: 107 SVTTPQFIVEDSWKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 163 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195 G++N VPL ++++ + D E+ ++ L + +++L++ IA++T+I A Sbjct: 164 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQDIAIVTSIGEA 223 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252 HLS+ + +A KA+IFEGL++ G +N D + F L+ A +YS Sbjct: 224 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 283 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + D +++ Q E + V G+ + + M N L L + L ++ Sbjct: 284 A-SRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 342 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 IK F P +R G FT ID+++NA+ SMK AI+ I P +G + Sbjct: 343 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 402 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430 + +LG + ++G+ ++ H + E L+ +H++ G H L ++ + + +++ Sbjct: 403 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKTDDRLQWFDSL 462 Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452 L +++ L++ +V+ K S Sbjct: 463 QELCNDLETKLIEDSLVLAKGS 484 >gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1] gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1] Length = 496 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 190/382 (49%), Gaps = 13/382 (3%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S++ P F V+D L L ++A+LRS ++AITGS GKT+T+ M+T L +K Sbjct: 92 SVTTPQFIVEDSRKFL--LELSAKLRSCFVNPVVAITGSAGKTSTRMMITHLLQE-EKVL 148 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPA 195 G++N VPL ++++ + D E+ ++ L + +++L++ IA++T+I A Sbjct: 149 ENRGNHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQDIAIVTSIGEA 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGK 252 HLS+ + +A KA+IFEGL++ G +N D + F L+ A +YS Sbjct: 209 HLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHD 268 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + D +++ Q E + V G+ + + M N L L + L ++ Sbjct: 269 A-SRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISP 327 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 IK F P +R G FT ID+++NA+ SMK AI+ I P +G + Sbjct: 328 YIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNK 387 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETM 430 + +LG + ++G+ ++ H + E L+ +H++ G H L ++ + + +++ Sbjct: 388 VLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKTDDRLQWFDSL 447 Query: 431 DGLFLFIQSSLVDGDVVVVKSS 452 L +++ L++ +V+ K S Sbjct: 448 QELCNDLETKLIEDSLVLAKGS 469 >gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252] Length = 538 Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 99/354 (27%), Positives = 161/354 (45%), Gaps = 23/354 (6%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167 TII ITGS GKT+TK ++ LS + A GSYN +G+ + ++ + + E+ Sbjct: 190 TIIGITGSYGKTSTKFIIAEILSLRYQVLATPGSYNTPMGICKVINEQLRPEHQVLVLEM 249 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+ H G+IR L + RP I V+T + P HL IE IA K+E+ G + LN Sbjct: 250 GIRHPGDIRELCAIARPDIGVVTAVGPMHLETMGSIEAIAREKSELVACTRPGGPVVLNA 309 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-H 286 DD + ++ G S + AD R E + V+ + + +V Sbjct: 310 DDPRVAAMAERAR--GPVWRVSVEGNPEADLVARDITYGPEGTRFVVRDETGTEQVFQTR 367 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G H N+L+ L + I + A++ P E R + R +G T+ID+++ Sbjct: 368 LLGRHNVLNILLALAVGRIFGLRLRQMAHAVARLRPVEHRLQLRR----EGPITVIDDAF 423 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N+NP + A+ +L Q GRRI V M E+G + L ++ + V + Sbjct: 424 NSNPVGARNALEILGQFR---TGRRIVVTPGMVELGAREAEENRALGRFMAQHVDLAVLI 480 Query: 407 SGFHVLALKDALPRS------IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSS 452 L +++ L + IHV S E D F+++ L GDVV+ ++ Sbjct: 481 GPRRTLPIQEGLREAGFPEDRIHVFRSLFEAQD----FLKTYLQPGDVVLYEND 530 >gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia turicatae 91E135] gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia turicatae 91E135] Length = 464 Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 116/460 (25%), Positives = 204/460 (44%), Gaps = 40/460 (8%) Query: 24 QGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 Q V+ S+DSR I + + +FA KG DG F+ + + G V + D Sbjct: 26 QKIVSFYSLDSREINAKNSSASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKD----CE 81 Query: 80 SLSIPVFGVDD---------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 SL + D+ V+ L LA R+ IAITGS GKTTTKEML L Sbjct: 82 SLCLEYLNRDENLVFLLTSNVVILLQNLAAHFITRTSFKRIAITGSNGKTTTKEMLYSIL 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE+ L ++ P I ++T Sbjct: 142 SERYKTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYIGEMNLLAEILNPEIVIVT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIY 248 I+ AH+ F +E + + K +I + T + LN + L+ AKS GI Y Sbjct: 202 NISYAHMQAFEDLEIVTAEKGKIMT--KSTQMVILNESCPYHLHLRVMAKSINPGINIFY 259 Query: 249 SFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 DF Q+R + +++ + + +G ++ G H N + + + + Sbjct: 260 -------FDFHSLQIRSFAFVNDKFFYDFTYKGFDYSILLP--GQHNIFNAISCIHLALL 310 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + L ++GR + R + ++++SYN N S A ++ + Sbjct: 311 LGLSENEIRNGLLHADFQKGRAELLRVKD----YLILNDSYNGNLGSFMALKEMI--LGL 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 +G++ +LG E+G+ + H + L N +L G +K ++ ++ Sbjct: 365 EIKGKKFIILGAFKELGKFAYEVHKTAIREVVLMNFDKGFLIGEEFQEVKKIENLALDNL 424 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y + + +L + +K S S R+++ L Sbjct: 425 FYFSNFENFIDYFVKNLESECFIAIKGSRSNRLERILDYL 464 >gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi] Length = 397 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 188/381 (49%), Gaps = 39/381 (10%) Query: 99 AVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 A+A+ L K + IAITGS GKTTTKEML LS KTY G+ N+ IG+PL++ R+ Sbjct: 41 ALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILRV 100 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F ++ IA K++I Sbjct: 101 EGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFKELQAIAFEKSKI--- 157 Query: 217 LEKTGTIF-LNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 + K IF +N + + L +AK +K +Y DF+ K S Sbjct: 158 IGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVY-------FDFENLSIKSFS------ 204 Query: 274 VQLQGK-SMEVVHHGIGYHM----AQNMLMTLGIVSI---LTADVDTAIKALSVFHPKEG 325 L GK S + V+ G Y + N+ +G +++ L + L ++G Sbjct: 205 -FLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKG 263 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + L + + ++++SYN N S A +++ ++ + ++ VLG E+GEL+ Sbjct: 264 RAE----ILTKNGYLILNDSYNGNMGSFMALKNMILDLNI--QNKKFIVLGSFKELGELA 317 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVD 443 H DL + N ++L G L ++D+ L ++SE D F SL Sbjct: 318 YKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSE-FDKFIDFFLKSLEP 376 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 +V+K S R++N + Sbjct: 377 SVFIVIKGSRFNRLERILNYI 397 >gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae TN] gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae Br4923] gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl -2,6-diaminopimelate--d-alanyl-d-alanyl ligase [Mycobacterium leprae] gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae] gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae Br4923] Length = 517 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 131/488 (26%), Positives = 205/488 (42%), Gaps = 63/488 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVNTDMVASI 78 + DSR++ P F A+ G DGHD A+ G +VV D Sbjct: 34 VEFDSRAVGPGGLFLALPGARSDGHDHAASAIAAGAVAVLAARPVGVPAIVVAPDPRTGD 93 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIAL 130 G L+ + D GA A+A ++ A TII ITGS GKT+TK+++ + L Sbjct: 94 GGLTGVLEHDADGSGAAVLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVL 153 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + A S+NN +G P T+ R D+ I E+ G I L + P I V+ Sbjct: 154 ELLGEVVAPPESFNNELGHPWTVLRATRSTDYLILEMSARRPGNIAALAAIAPPKIGVVL 213 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---I 247 + AHL F E IA K E+ + + ++G + LN DD + + A I+ Sbjct: 214 NVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGS 273 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----VHHGI-GYHMAQNMLMTLGI 302 YS S N+ E + L + + G+ G H N L + Sbjct: 274 YSHPGSPNSPDVWTGPVSLDELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAV 333 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 A V+ AL+ P R + T+ID++YNANP SM+A + L+ Sbjct: 334 GLECGASVEEVAVALAATGPVS--RHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAW 391 Query: 363 IS---------PHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 I+ P RR AVLG+M E+GE S + H + + ++S + + G Sbjct: 392 IAHGGTHDKNQPGSCARRSWAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVVGGG-- 449 Query: 413 ALKDALPRSIH-VHYSETMDG--------------LFLFIQSSLVDGDVVVVKSSNSCGF 457 RSI+ +H M+G +++ + GDVV++K+S+S G Sbjct: 450 -------RSINAMHRGAVMEGSWGLETVNVADPAAALTLLRAEVRPGDVVLIKASHSVGL 502 Query: 458 YRLINLLL 465 L ++L+ Sbjct: 503 GALADVLV 510 >gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 821 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRSFVVG-ELPADMQSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 S+ + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4] gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4] Length = 821 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVG-ELPADMQSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 S+ + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] Length = 821 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVVG-ELPADMQSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 S+ + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] Length = 821 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/393 (25%), Positives = 178/393 (45%), Gaps = 10/393 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQK 63 T ++ + IG P ++ I DSRS+ P+E FFA+K DGH +I ++ Sbjct: 4 TIEEITSVMGAERIGNAP-ARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV+ + V + L AL +L R + + ++ ITGS GKT K Sbjct: 63 GVRNFVVSDLPENGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ + + GIFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEAGISEMGEMEALRPIIQ 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T I AH NF+ +++ K ++F+ + I N D+ AKS Sbjct: 183 PTIGVLTNIGGAHQENFTSLQDKCMEKLQLFKDCD---VIIYNGDNELISSCVAKSLFTA 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +S ++ F + + + ++ + G E I +N L L + Sbjct: 240 REIAWSMKDTERPLF-IESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + + P R + LI++SYN++ AS+ A+ +++ Sbjct: 299 LYLMVSPEVIAERMLRLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +R +L D+ E G++S+ + +A+++ Sbjct: 356 TEDKGRKRTLILSDILESGQVSKLLYRQVADLV 388 >gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/422 (25%), Positives = 181/422 (42%), Gaps = 30/422 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T D+ + I IG P ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YTIEDIARIIGARRIGDRPAA-IDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYA 61 Query: 63 KGAGLVVVNTDMVASIG-----------------SLSIPVFG---VDDVLGALNKLAVAA 102 +G VV+ + + +G + P F V + L AL KLA Sbjct: 62 RGVRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQH 121 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R R + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + Sbjct: 122 RDRFQIPVIGITGSNGKTIVKEWLHQLLSPERMITRSPRSYNSQIGVPLSVWQMSEQTEL 181 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I E G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + Sbjct: 182 AILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---V 238 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + N DD F KS L + I K + K ++ + + + + Sbjct: 239 VIYNGDDEFINNCVGKS-MLAAREIAWSRKDMERPLYISKVEKQEDSTVISYRYLDMDNT 297 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I +N L L L + + ++ P R + LI Sbjct: 298 FTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPV---AMRLEVKEGKNGCLLI 354 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ S+ A+ L + S +R +L D+ E G+ + + + +A++++ I Sbjct: 355 NDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIE 414 Query: 403 HV 404 + Sbjct: 415 RI 416 >gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36] gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36] Length = 841 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 122/492 (24%), Positives = 213/492 (43%), Gaps = 52/492 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 ++ + ++I +G VP ++ + DSRS+ P+E FFA+ DG +I Sbjct: 3 YSIESITESIGARRVGNVP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYA 61 Query: 63 KGAGLVVVNTDMVASI--GSLSI------PVFG----------VDDVLGALNKLAVAARL 104 +G V++ + I G L I P V + L AL KLA R Sbjct: 62 RGVRNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRN 121 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + I Sbjct: 122 RFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAI 181 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 FE G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + + Sbjct: 182 FEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLFKNCD---VVI 238 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK-SM 281 N DD F AKS + +S + + ++ K C+ S+ + + ++ Sbjct: 239 YNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKQDDCTVISYRYLDMDNTFTL 298 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCAL 334 + +N L L L + + ++ P KEG+ C Sbjct: 299 PFIDDA----SIENSLNCLAACLYLMLPAERITERMAKLEPIAMRLEVKEGKNN---C-- 349 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 LI++SYN++ S+ A+ L + S RR +L D+ E G+ + + + +A+ Sbjct: 350 -----LLINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQ 404 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSS 452 +++ I + G + + A +I + L IQ ++ +++++K + Sbjct: 405 LVNSRGIERIIGVGNEISSC--AARFNIEKTFYPDTAALIRTIQRGELRLENEIILIKGA 462 Query: 453 NSCGFYRLINLL 464 GF L +L Sbjct: 463 RKFGFDSLTEVL 474 >gi|150004319|ref|YP_001299063.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides vulgatus ATCC 8482] gi|149932743|gb|ABR39441.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides vulgatus ATCC 8482] Length = 821 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 114/445 (25%), Positives = 205/445 (46%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGAHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 + + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057] gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057] Length = 834 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 188/415 (45%), Gaps = 25/415 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 ++ + +++ +G VP ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YSIESITESMGARRVGSVP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61 Query: 63 KGAGLVVVNTDMVASIGSLSI--------PVFG---VDDVLGALNKLAVAARLRSKATII 111 +G VV+ + I S + PV V + L AL KLA R + + +I Sbjct: 62 RGVRNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVI 121 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKT KE L +S + SYN+ IGVPL++ +M + IFE G+S Sbjct: 122 GITGSNGKTIVKEWLHQLISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISE 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GE+R L ++++P I ++T I AH NF ++E K +F+ + + N DD F Sbjct: 182 PGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNCD---VVIYNGDDEF 238 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 AKS + +S + + ++ K ++C+ S+ + + I Sbjct: 239 ISNCVAKSMLSAREIAWSRKDMERPLYISKVEKKEECTVISYRYLDMDNT---FTLPFID 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N L L L + + ++ P R + LI++SYN++ Sbjct: 296 DASIENSLNCLAACLYLMLPAEKITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSD 352 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 S+ A++ L + S +R VL D+ E G+ + + + +A++++ I + Sbjct: 353 LGSLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERI 407 >gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Plesiocystis pacifica SIR-1] gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Plesiocystis pacifica SIR-1] Length = 482 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 180/428 (42%), Gaps = 46/428 (10%) Query: 5 WTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 W+ L A G + G P + IDSR+ P F I DGHDFI A+ Sbjct: 3 WSPERLAAAASGRLLRAGTRP---IQAAFIDSRTPTPGGLFVPIVA-ARDGHDFIPAALA 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V ++ V V D L L +LA AR + ++AITGS GKTTT Sbjct: 59 AGASATLVGPGRGEAVPEGDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFL 178 + + AL + C G++NNH+G+PLTL + + ELGMS GE L Sbjct: 119 RAFVEAALRTAFDPLICTQGNFNNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGI--------EEIASAKAE-------IFEGLEKTGTI 223 + P + VIT+IA HL + E +A +A + G E Sbjct: 179 AQVAGPSVHVITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEPALVP 238 Query: 224 FLNYDDSFFELLK--AKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L DS +L+ + A+G G A +LR + E + + L Sbjct: 239 HLPGPDSGLRVLRFGSPDAAIGAPLDVAIVAVEVGARTRAVLRLR-GEDGQEDRALSLSL 297 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + G H A+N + + + L D+D +AL P RG+ L Sbjct: 298 R---------TFGAHNARNAAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGG 348 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 LI + YNANP SM AA+ L+ + +G R+AVLGDM E+G + H ++ Sbjct: 349 HTHALIADCYNANPGSMSAALGSLAML----DGPRVAVLGDMLELGPDEDALHREVGTEA 404 Query: 397 SLYNISHV 404 + I V Sbjct: 405 ARLGIDAV 412 >gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] Length = 821 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 114/445 (25%), Positives = 204/445 (45%), Gaps = 21/445 (4%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV ++ A + S Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYERGVRNFVVG-ELPADMKSFQDA 82 Query: 85 VF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F + + L L KLA R + + +I ITGS GKT KE L LS + SY Sbjct: 83 NFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVVTRSPRSY 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH NF + Sbjct: 143 NSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSL 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ K +F+ + I + D+ AKS + +S ++ F + Sbjct: 203 QDKCMEKLTLFKDCD---VIIYDGDNELISSCVAKSLFTSREIAWSKKDNERPLF-IESI 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ + ++ + G E I +N L L + + + + ++ Sbjct: 259 QKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVSPEQITERMARL--- 315 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + LI++SYN++ AS+ A+ +S+ S +R +L DM E G+ Sbjct: 316 EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILSDMLETGQ 375 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 + + +AE++ + + G + + A R I ++ T + L ++S L+ Sbjct: 376 SGKLLYRQVAELVHSRGVEKIIGVGEEI---RTAAARFEIEKYFFRTTEEL---LESDLL 429 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 G +V++VK S + F R+ + L Sbjct: 430 AGLRNEVILVKGSRAFHFDRISDRL 454 >gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A] gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A] Length = 849 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 115/459 (25%), Positives = 192/459 (41%), Gaps = 33/459 (7%) Query: 24 QGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +G V+ + DSRS+ P+E FFA++ DGH++I +G VV Sbjct: 44 EGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGVRFFVVEELPCEWEKLY 103 Query: 82 SIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 S F V AL +LA R I+ +TGS GKT KE L LS K+ Sbjct: 104 SQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTVVKEWLYQLLSFSKRVTRSP 163 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 SYN+ IGVPL++ + GIFE G+S GE+ L ++++P I V+T++ AH NF Sbjct: 164 RSYNSQIGVPLSVWLLNEQTQVGIFEAGISKKGEMEVLRNIIKPTIGVLTSLGDAHQENF 223 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKT--------IY 248 +EE K +F ++ + YDD S + L K LG I Sbjct: 224 VSMEEKCREKLRLFTDVD---VLVYPYDDKLIRSCVDTLSFKGKGLGWSVKDASVSLFIK 280 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 KS+ + WKQ E S+ + S+ + + L + L Sbjct: 281 DIKKSELSTTIAYIWKQEKEDSYTIPFIDDASI------------YDSITCLALCLYLGV 328 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + + P R Q TLI++SYN++ S+ A+ +++ H Sbjct: 329 KKEVLKARMPLLEPV---AMRLEVKEGQRGCTLINDSYNSDINSLDIALDFMNRRPDHKG 385 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 +R VL D+ + E ++ + +A + + G ++ + A + Sbjct: 386 RKRTLVLSDILQSAEDDEALYRRVASLAEKRGVEKFIGIGETLICQRKAFNNIKEKCFFT 445 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 T+ G + +V+++K + GF +L +L+ + Sbjct: 446 TVGGFLSSDAFRQMHDEVILLKGARCFGFEQLTEMLVNK 484 >gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis C231] gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis 1002] gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis I19] Length = 516 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 123/486 (25%), Positives = 198/486 (40%), Gaps = 55/486 (11%) Query: 20 GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVV------- 70 G P V G + DSR + F A+ G DGHD+ AV GA G ++ Sbjct: 20 GTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAAKAVADGAVGCLLSRPVMDGM 79 Query: 71 ----------------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 D A+ + V V LG + + + + ++ +T Sbjct: 80 RPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGLIARHVIDILTQKGLVVVGVT 139 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKT+TK+M+ S+ T A GS+NN IG P T + + F I E+ +G Sbjct: 140 GSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTALKCTAETQFLISEMSARGIGH 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + P I V + AH+ F IA AK E+ E L + G LN DD Sbjct: 200 IAHLAAIAPPKIGVELNVGTAHVGEFGSQTAIAQAKGELVEALPENGEAVLNADDPLVAQ 259 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293 + +++ A T YS + A + + + + ++ +++ ++ G H Sbjct: 260 MASRTRAR--VTSYSAVSTAAAVYATDITFDHNACARFRLHIEDENVHQITLLVAGEHQV 317 Query: 294 QNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L D +T +L+ R C N T+ID++YNAN S Sbjct: 318 SNALAAAAAAHAAGIDSETIAHSLNRHVGASAHRMSLVSCPRN---ITVIDDAYNANNES 374 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+A +S L + AVLG M E+G SQ+ H + L NI G H L Sbjct: 375 MRAGLSALVHTARSRGSSAWAVLGPMGELGRESQTVHAAIG--AELKNI------GVHGL 426 Query: 413 AL--KDALPRSIHVHYSETMDGLFLFIQSSLVDG-----------DVVVVKSSNSCGFYR 459 +++ R++ +T G+ + + ++ DVV+VK+SN+ + Sbjct: 427 IAVGENSDSRALATAAEKT--GITTLVARTNLEAAHKLAPLLHADDVVLVKASNAFALWE 484 Query: 460 LINLLL 465 + + L+ Sbjct: 485 VADELV 490 >gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] Length = 830 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 119/479 (24%), Positives = 205/479 (42%), Gaps = 34/479 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T + + I +G + ++ + DSRS++ P+E FFA+ G +I Sbjct: 3 YTIESIAECIGARRVGEC-EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYD 61 Query: 63 KGA-GLVVVNTDMV----ASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGS 116 +G VV D +G LS F V + L AL KLA R K II ITGS Sbjct: 62 RGVRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGS 121 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT KE L LS ++ SYN+ IGVPL++ ++ + + GIFE G+S +GE+ Sbjct: 122 NGKTIVKEWLHQLLSPDRRIVRSPRSYNSQIGVPLSVWQLNEEAELGIFEAGISEMGEMN 181 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L +++P I ++T I AH NF ++E K +F+ + + N D+ Sbjct: 182 ALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCV 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 AKS L + I K + + + + + + + I +N+ Sbjct: 239 AKS-MLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIPFIDDASIENV 297 Query: 297 LMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNAN 349 L L L D + ++ P KEG+ C LI++SYN++ Sbjct: 298 LNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSD 347 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 AS+ A+ L + S +R +L D+ E G+ + + + +A+++ I + G Sbjct: 348 LASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLIGVGA 407 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + ++ ++ + L + +V+++K S F +LL EE Sbjct: 408 EISSCTARFDDALERYFFPNTEALLASNLLKSLHSEVILIKGSRVFNF----DLLSEEL 462 >gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate [Corynebacterium glutamicum] Length = 293 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 32/255 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSRS+ P F A+ G DGHDF A++KGA V+ ++ + ++ +P + Sbjct: 31 VEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREV--DVPAIVVPPVKIQ 88 Query: 90 D----------------VLGALNKLA-------VAARLRSKATIIAITGSVGKTTTKEML 126 + V+ AL++LA VA + ++AITGS GKT+TK+ + Sbjct: 89 ESNADIYAHEPDGHGAAVVEALSRLARHVVDICVAGH---QLNVVAITGSAGKTSTKDFI 145 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L T A GS+NN +G+P T+ R D + + E+ +G I+ LT + P I Sbjct: 146 ATVLGQDGPTVAPPGSFNNELGLPHTV-RCTTDTKYLVAEMSARGIGHIKHLTEIRPPRI 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTI-FLNYDDSFFELLKAKSHALG 243 A + + AHL F E IA AK EI E L +KTG + LN DD F + ++ A Sbjct: 205 AAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARV 264 Query: 244 IKTIYSFGKSKNADF 258 + G++K +D+ Sbjct: 265 VWFTTDAGQAKKSDY 279 >gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 523 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 18/316 (5%) Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAA----RLRSKATI 110 +LH A L++V + S + +P + + L N A A R + +I Sbjct: 123 LLHYFLSAAALILVTPFLFLSAWLMVLPAAWISEPLEMAIRNHYAADAAKLLRSNNALSI 182 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELG 168 + ITGS GKT+ K +L LS + T GSYNN +G+ LT+ R ++ +F E+G Sbjct: 183 VGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTI-RNKLERLHEVFLCEMG 241 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+ EI L V+P V+T++ HL+ F +E I K ++ E L G F+N D Sbjct: 242 ADHVKEIHDLMQFVKPQYGVVTSVGAQHLATFGSMENILHEKMQMIECLPADGIGFVNRD 301 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 +++ ++ I FG S++AD++ + E + V +G+S + Sbjct: 302 NAYIRTYSIQNTC----RIVWFGMSEDADYRCCDIRYSEEGTSFTVIQEGQSHRFHTKLL 357 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N +T I T V I AL+V ++ +R + + F TL+D++YN+ Sbjct: 358 GKHNVVN--ITCAIAVAHTLGVSWEIMALAV---EKLPYVEHRLQVRKSFCTLLDDAYNS 412 Query: 349 NPASMKAAISVLSQIS 364 NP + A+ VL Q+ Sbjct: 413 NPEGARCALEVLKQMK 428 >gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] Length = 826 Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 21/444 (4%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSRS+ P+E FFA+K DGH++I +G VV ++V + P Sbjct: 30 DSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVV--EVVPEDWATRYPDSNFLK 87 Query: 91 VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+G AL +LA R I+ ITGS GKT KE L LS SYN+ I Sbjct: 88 VVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S GE+ L +++P I V TT+ AH NF +E Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKC 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K ++F E I + D+ ++ G K +S K+ A F ++ ++ Sbjct: 208 HEKIKLFHDTE---AIVYSADNEVMAQCLSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKD 263 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGR 326 ++ + +G++ + +T +VS+ L T + ++ P Sbjct: 264 IETTVSYVWKGQTEGQYKLPFIDDASVKNSITCAVVSLHLGLTPATISERMAQLEPV--- 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R Q TLI++SYN++ S+ A+ +++ H RR +L D+ + G+ + Sbjct: 321 AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDK 380 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VD 443 + +A + + G +LA + A H+ T++ FI S + + Sbjct: 381 DLYNKVAFLCEKRGVEKFIGIGEGLLAQRSAFKHLGEKHFFATVNS---FIHSDVFANLH 437 Query: 444 GDVVVVKSSNSCGFYRLINLLLEE 467 +V+++K + GF RL LL+++ Sbjct: 438 DEVILLKGARQFGFDRLTELLVKK 461 >gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. BL107] gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. BL107] Length = 310 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 154/329 (46%), Gaps = 30/329 (9%) Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLT+ + E+GM GEI L+ P +AVIT I AH+ Sbjct: 2 HNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLGS 61 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA+AK EI L+ G + + D+ E +K ++S G+ ++R Sbjct: 62 REAIAAAKCEITAALKPDGVVVIPAGDALLESALSK--------VWS-GRV----VRVRL 108 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + +EV H + G H A+N+L+ L + L D ++ A+ Sbjct: 109 ADDTPVAADCIGVIDAGHLEVGAHRLPLPLEGRHNARNVLLALAVADQLGVD-SASLNAM 167 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 V P GR +R L QG TL+DE+YNA+P ++ AA+++LS GRR AVLG Sbjct: 168 EVSVPG-GRNRR----LVQGRLTLLDETYNASPEAVMAALALLSS----QPGRRFAVLGT 218 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFL 435 M E+G S H D+A + + + + G A+ +A H+ + + Sbjct: 219 MLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGLPHLAVVSSPEDAAK 278 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ L GDVV++K+S RL+ LL Sbjct: 279 PLKEWLRAGDVVLLKASRGVALERLLPLL 307 >gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus erythropolis SK121] gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus erythropolis SK121] Length = 519 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 129/497 (25%), Positives = 204/497 (41%), Gaps = 81/497 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHD---------FILHAVQKGAGLVVVNTDMVASIGS 80 + DSR +AP F A+ G DGHD + + G+ + V + G Sbjct: 31 VEFDSRKVAPGGLFLALPGARVDGHDHAEAAVAAGAVAVLAARPVGVPAIVVPSVPNDGP 90 Query: 81 LSIPVFGVDD------VLGALNKLA--VAARLRSKAT-------IIAITGSVGKTTTKEM 125 ++ + D VL AL LA V L + T ++ +TGS GKT+TK++ Sbjct: 91 SAVMLLEHDTDGSGAAVLHALGLLARAVVDELATDGTPADGGLTLVGVTGSAGKTSTKDL 150 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + A GS+NN +G+P T+ R F + E+ +G + LT + P Sbjct: 151 IAALLRECGEVVAPPGSFNNELGLPWTVLRADEKTRFLVLEMSARGVGHVGELTKIAPPK 210 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHAL 242 I V+ + AHL F E IA AK E+ E L G LN DD + +++ A Sbjct: 211 IGVVLNVGTAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAAMASRTKA- 269 Query: 243 GIKTIYSFGKSKNADF---------QLRK--WKQCSEQS-WMEVQLQGKSMEVVHHGIGY 290 I G+S++ D Q R CS+ S + + + G+ HH Sbjct: 270 ---RIVFVGQSEDCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGE-----HHVSNA 321 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A + + G+ A V KA S +R T++++SYNANP Sbjct: 322 LAAAAVALENGLAVADIARVLEGTKAASA--------RRMEVTERADGVTVVNDSYNANP 373 Query: 351 ASMKAAISVLSQISPHGE--GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 SM+AA+ L ++ GRR AVLG+M E+G S H + + ++S + + Sbjct: 374 DSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEHDAIGRLAVRLDVSKLIVV 433 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GDVVVVKSSN 453 G S +H M+G + + D GD+V+VK+S Sbjct: 434 GTGRT--------SRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEPGDLVLVKASK 485 Query: 454 SCGFYRLINLLLEEFPA 470 S + + +L P+ Sbjct: 486 SVELWTVAEAILAATPS 502 >gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei BCC215] Length = 300 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS +P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 7894] gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 112] Length = 289 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 10/268 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ + + + I F A Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHGAAGGAPAAVTGA 261 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + S + + G ++V + +G H A+ Sbjct: 262 LDGSLLAIDTPGARIDVRLNALGEHNAR 289 >gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus scotoductus SA-01] gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus scotoductus SA-01] Length = 428 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 116/437 (26%), Positives = 199/437 (45%), Gaps = 40/437 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR P F A+ G G +++ A KGA LV+ + A++ Sbjct: 29 VRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGAHLVLSDRPGPATVE------- 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +L A R ++A+ GS GKTTTKE L L A G+ N Sbjct: 82 -VVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKEALAQGLG----FPAPPGNQNTA 136 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 + L R+ + ELG+ +GE+ L L RPH+AV+T + HL F +E + Sbjct: 137 PPLARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARPHLAVLTALGEEHLEAFGSLEGV 196 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 +A GL ++ + E+L+ G+ T Y FG++ LR Sbjct: 197 VEEEA----GLLSAPQALVSLQAA--EVLERFGLGRGLPT-YGFGEATFRGENLRLLLHE 249 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S + +++ + + G+G A L LG+ +L + + L+ GR Sbjct: 250 SRFRYGALEVH-----IPYPGMG--PALAALAALGVAEMLGLNPKEVAERLAHLVLPPGR 302 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R + ++++YNANP S+KA ++ L+ + P GR+ VLG+M E+GE + Sbjct: 303 MERR----EKDGVVFLNDAYNANPLSVKAGLAWLA-LQP---GRKWVVLGEMRELGEEAL 354 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H+++A+ + + ++L + A A S+ +E ++ +++ + GD+ Sbjct: 355 RLHLEVAQEAARLGLKPLYLGPY---AKAQA---SLGGEAAEGLEEAVGWLKERVQPGDL 408 Query: 447 VVVKSSNSCGFYRLINL 463 V +K+S S G R++ L Sbjct: 409 VYLKASRSVGLERILEL 425 >gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 838 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 118/488 (24%), Positives = 207/488 (42%), Gaps = 47/488 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 ++ + ++I +G P ++ + DSRS+ P+E FFA+ DG +I Sbjct: 3 YSIESITESIGARRMGNAP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYA 61 Query: 63 KGA---------------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G G + ++ M + V + L AL KLA R + + Sbjct: 62 RGVRNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQ 121 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + IFE Sbjct: 122 IPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 181 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 182 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VVIYNG 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVH 285 DD F AKS + +S + + ++ K C+ S+ + + Sbjct: 239 DDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYLDMDNT---FTL 295 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGF 338 I +N L L L + + ++ P KEG+ C Sbjct: 296 PFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPIAMRLEVKEGKNN---C------ 346 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 LI++SYN++ S+ A+ L + S RR VL D+ E G+ + + + +A++++ Sbjct: 347 -LLINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLVNS 405 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCG 456 I + G + + A +I + L IQ ++ +++++K + G Sbjct: 406 RGIERIIGVGNEISSC--AARFNIEKTFYPDTAALIRAIQRGELRLENEIILIKGARKFG 463 Query: 457 FYRLINLL 464 F L +L Sbjct: 464 FDSLTEVL 471 >gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei B7210] Length = 297 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 9] Length = 298 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 91] Length = 289 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 14] Length = 272 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] Length = 826 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 122/454 (26%), Positives = 198/454 (43%), Gaps = 41/454 (9%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSRS+ P+E FFA+K DGH++I +G VV T V + P Sbjct: 30 DSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVET--VPEDWNRRYPDSNFLK 87 Query: 91 VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+G AL +LA R I+ ITGS GKT KE L LS SYN+ I Sbjct: 88 VVGSLEALQRLAERHRDEYLVPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S GE+ L +++P I V T + AH NF ++ Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMSALHDIIQPTIGVFTCLGSAHQENFPSLDAKC 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQC 266 K +F T I + DD + G K +S K + A F ++ K+ Sbjct: 208 REKLHLF---HDTQAIVYSLDDEVLNRCLDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKD 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + GK AQ L + S++ + + A+ AL + Sbjct: 264 VETTVTYTWKNGKE------------AQYRLPFIDDASVVNS-ITCAVTALQLGVTPAAL 310 Query: 327 GKR--------YRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 G+R R + +G TLI++SYN++ S+ A+ +++ H RR +L Sbjct: 311 GERMALLEPVAMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILS 370 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 D+ + G+ + + +A + + G +L + A H+ T++ F Sbjct: 371 DILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSAFRHLGKKHFFATVNA---F 427 Query: 437 IQSSL---VDGDVVVVKSSNSCGFYRLINLLLEE 467 I S + + +V+++K + GF RL LL+++ Sbjct: 428 IHSDVFANLHDEVILLKGARQFGFDRLTELLVKK 461 >gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei DM98] Length = 303 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---GSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ +A + G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Deinococcus deserti VCD115] gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Deinococcus deserti VCD115] Length = 433 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 117/438 (26%), Positives = 194/438 (44%), Gaps = 64/438 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR +P AF A+ G G+ F+ A+ GA V+ + D+ + L +P Sbjct: 24 LTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVPRA---LRVPSQEES 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + AL A R R+ + ++ ITGS GKTT K + A ++++ Y + YN + Sbjct: 81 NARDALFAWARQERARN-SLVVGITGSAGKTTAK---SYAAAALEAHYMPV--YNTMPAI 134 Query: 150 PLTLARMPVDVDFG------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 L +++G + E+G+ +GE+ L LVRP + V+T+I PAHL I Sbjct: 135 ACFL------IEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVTSIGPAHLEQLGSI 188 Query: 204 EEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA K I +G G Y S G+++ Y FG +A L+ Sbjct: 189 EGIAREKGVILQGRRALVGAQAAPY----------YSQNPGVES-YGFGNVTHAGQDLQV 237 Query: 263 WKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + S+ V + ++ +G +AQ + L + A V Sbjct: 238 TPEGAGFSYGGVDVALPLAAPVQAEAAVLGMVLAQQAGIPLEAAASRLAQVSLP------ 291 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 G RYR ++ G +T+ID++YNA+P +++AA+ L + GRRI+VLG M Sbjct: 292 -------GGRYR--VHPGRYTVIDDAYNASPLAVQAALDALGALP----GRRISVLGRML 338 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G + H A+V S G A + + T+ L + + Sbjct: 339 ELGPTERELH---AQVGSYARERADLTYGVGPFAAE------LGDRAFATVPELLGALTA 389 Query: 440 SLVDGDVVVVKSSNSCGF 457 + DGDVV++K+S + Sbjct: 390 EVRDGDVVLIKASRGISW 407 >gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA] gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA] Length = 821 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 115/452 (25%), Positives = 202/452 (44%), Gaps = 35/452 (7%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I DSRS+ P+E FFA+K DGH ++ ++G VV G L + Sbjct: 24 IDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYERGVRNFVV--------GELPVD 75 Query: 85 VFGVDDV--------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + D L L KLA R + + +I ITGS GKT KE L LS + Sbjct: 76 LQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVKEWLYQLLSPDRVV 135 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 SYN+ IGVPL++ M + IFE G+S +GE+ L +++P + ++T I AH Sbjct: 136 TRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIKPTVGILTNIGGAH 195 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 NF +++ K +F+ + I + D+ AKS + +S ++ Sbjct: 196 QENFFSLQDKCMEKLTLFKDCD---VIVYDGDNELISSCVAKSLFASREIAWSKKDNERP 252 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 F + ++ + ++ + G E I +N L L + + + + Sbjct: 253 LF-IESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCLAVALYMMVPPEQITER 311 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++ E R + LI++SYN++ AS+ A+ +S+ S +R +L Sbjct: 312 MARL---EQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRRSDDKGKKRTLILS 368 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFL 435 DM E G+ S+ + +AE++ + + G + + A R I ++ T + L Sbjct: 369 DMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEI---RTAAARFEIEKYFFRTTEEL-- 423 Query: 436 FIQSSLVDG---DVVVVKSSNSCGFYRLINLL 464 ++S L+ G +V++VK S + F R+ + L Sbjct: 424 -LESDLLAGLRNEVILVKGSRAFHFDRISDRL 454 >gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108] gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108] Length = 831 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 115/478 (24%), Positives = 211/478 (44%), Gaps = 34/478 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 ++ ++++ I IG V ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YSIENIVEIIGAQRIGNV-SATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYA 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFG-----------VDDVLGALNKLAVAARLRSKATII 111 +G VV+ + S+ + F V + L AL KLA R + + +I Sbjct: 62 RGVRNFVVSKE---SMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVI 118 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKT KE L LS+ + SYN+ IGVPL++ +M IFE G+S Sbjct: 119 GITGSNGKTIVKEWLHQLLSAERVIVRSPRSYNSQIGVPLSVWQMNEQSGLAIFEAGISE 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GE+R L ++++P I ++T I AH NF ++E K +F+ + + N DD F Sbjct: 179 PGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEF 235 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK-SMEVVHHGI 288 AKS + +S + + ++ K C+ S+ + + ++ + Sbjct: 236 ISNCVAKSMLSAREIAWSRKDMERPLYIGKVEKKDDCTVISYRYLDMDNTFTLPFIDDA- 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 +N L L L + + + P R + LI++SYN+ Sbjct: 295 ---SVENSLNCLAACLYLMLPAEKITERMGRLEPV---AMRLEVKEGKNGCVLINDSYNS 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + S+ A++ L + S +R +L D+ E G+ + + + +A++++ I + G Sbjct: 349 DLGSLDIALNFLYRRSLSNGLKRTLILSDILETGQNTSTLYRQVAQLVNSRKIERIIGVG 408 Query: 409 FHVLALKDALPRSIHVHYSETMDGLF-LFIQSSL-VDGDVVVVKSSNSCGFYRLINLL 464 + A +I + D L ++ L ++ +++++K + GF L +L Sbjct: 409 SEISTC--AARFNIENAFYPNTDALMNAVVKGKLRLENEIILIKGARKFGFDALTEVL 464 >gi|146299078|ref|YP_001193669.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium johnsoniae UW101] gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101] Length = 822 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 113/452 (25%), Positives = 209/452 (46%), Gaps = 28/452 (6%) Query: 26 FVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 FV+ ISIDSRS+ PQ F A+ G + D H +I ++KG V G + Sbjct: 24 FVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEKGVQNFAVQYIPENVKGKANF 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F V + L AL +LA R II +TGS GKT KE L LS SY Sbjct: 84 --FVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVKEWLNFLLSPDYNIIRSPKSY 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ +GVPL++ + + GIFE G+S + E+ L +++P+I V+T I AH F + Sbjct: 142 NSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVNLEKIIKPNIGVLTNIGSAHDEGFENL 201 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFG-KSKNADFQL 260 + + K +F +K+ I ++ + L + + L + ++S+ +AD + Sbjct: 202 TQKINEKLLLF---KKSAVIIYQKNELVDKCLLDFSAQYPLENRALFSWSFADASADVFI 258 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA---QNMLMTLGIVSILTADVDTAIKAL 317 K + ++ + ++ Q + E+ + I + + +N + L ++ D + Sbjct: 259 LKKETKNDSTTIKYQYKD---EIFNLEIPFSDSASIENAISCLLVLLHFEYDFTIIQNRM 315 Query: 318 SVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + +P E R + G +LID+SY+++ S+K A+ L S + +L Sbjct: 316 EMLYPVE-----MRLEVKNGIHNCSLIDDSYSSDFQSLKIALDFLE--SQKKNASKAVIL 368 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 D+ + G ++ + +A+++S I+ V G + + +D P S + Sbjct: 369 SDIFQSGFSNEELYSKVAQLISDNKINRVIGIGTTISSFQDKFPNSTMF---QNTAAFIA 425 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I++ + + +++K + S F +++LL E+ Sbjct: 426 EIENLNFNNETILIKGARSFQFEEIVSLLEEK 457 >gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845] gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845] Length = 826 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 122/458 (26%), Positives = 203/458 (44%), Gaps = 49/458 (10%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSRS+ P+E FFA+K DG ++I +G VV ++V + P Sbjct: 30 DSRSLCFPEETLFFALKTERNDGQNYIPELYARGVRNFVV--EVVPEDWATRYPDSNFLK 87 Query: 91 VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+G AL +LA R I+ ITGS GKT KE L LS SYN+ I Sbjct: 88 VVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S GE+ L +++P I V TT+ AH NF +E Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKC 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----- 262 K ++F E I + D+ ++ G K +S K+ A F ++ Sbjct: 208 HEKIKLFHDTE---AIVYSADNEVMAQCLSQYDYKGQKLDWSV-KNTEAAFYIKAIEKKD 263 Query: 263 --------WKQCSEQSWMEVQLQGKSME--VVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 WK +E + + S+E + + H+ +T +S A ++ Sbjct: 264 IETTVSYVWKGQTEGQYKLPFIDDASVENSITCAVVSLHLG----LTPATISERMAQLEP 319 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 L V KEG ++ C TLI++SYN++ S+ A+ +++ H RR Sbjct: 320 VAMRLEV---KEG---QHGC-------TLINDSYNSDFNSLDIALDFMNRRPDHKGRRRT 366 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 +L D+ + G+ + + +A + + G +LA + A H+ T++ Sbjct: 367 LILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSAFKHLGEKHFFATVNS 426 Query: 433 LFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLEE 467 FI S + + +V+++K + GF RL LL+++ Sbjct: 427 ---FIHSDVFANLHDEVILLKGARQFGFDRLTELLVKK 461 >gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 460 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/389 (26%), Positives = 174/389 (44%), Gaps = 29/389 (7%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D AL KL R +S+A I +TGS GKTTTKEM LS+ K + + N Sbjct: 85 VIEVSDPKQALWKLVHWQRAQSRAIFIGVTGSAGKTTTKEMAASILSTKYKVLKSVANNN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203 + +P L + + E+GM+ G IR + +P + ++T + AH+ + Sbjct: 145 LYSLMPGNLILLHPKHQVVVLEMGMAGFGNIRKQCLVAKPSLGIVTNVGEAHVGKLGHSL 204 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 +A AK E+ +GL GT+ LN DD + L + + + G K A + + Sbjct: 205 ANVARAKQELIDGLAPKGTLILNADDPGSKRLNTRRFR---GQVITLGIEKPATIRATRV 261 Query: 264 KQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K + GK V +H G H N L + + L K L F Sbjct: 262 KYTKNGMSFYI---GK---VPYHIPVWGRHNIYNALAAIAVAKQLNVPTPWIQKGLQNFP 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R +R + N + LI++ YNANP++M A + VL +++ G+ + +AVLGDM + Sbjct: 316 APRMRLQRIKGIKN---WLLINDCYNANPSAMVAGLKVLMRVA--GKKQSVAVLGDMHSL 370 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--------RSIHVHYSETMDGL 433 G+LS H + + ++ N S + G + + RS+ + ET+ Sbjct: 371 GKLSLQSHRQVGKFVARLNPSTLITVGPQAVQIAKGASAAGYKGKIRSLP-NQPETVAN- 428 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 +++ ++ +G V+ K+S + +N Sbjct: 429 --YLRKNIPEGSVLYFKASRKTALEKTVN 455 >gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus terrae PB90-1] gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus terrae PB90-1] Length = 472 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 77/425 (18%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +IDSR + + F AIK DGH F+ A GA +V+T A L++P V D Sbjct: 29 AIDSRQLRRGDVFVAIKSEQRDGHAFLGAAEAAGASAALVSTPDPA----LALPQLVVAD 84 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--------KTYACIGS 142 L A +A R + ++ I+GS GKT+TK +L + L + + A G+ Sbjct: 85 PLRAFQAIAREHRRLFRGPVVGISGSAGKTSTKNLLALLLETAAASSDAHAGQVLATEGN 144 Query: 143 YNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 NNH+GVPLTL + P F + E G+S GE+ L +++P +A+IT +A AH Sbjct: 145 LNNHLGVPLTLTLLDPAVHRFAVVEAGISAPGEMAPLAEMIQPDVALITLVAAAHTEELG 204 Query: 202 GIEEIASAKAEIFEGLEKTG-TIFLNY------------------------------DDS 230 G+ +A KA + + TG IF + D Sbjct: 205 GLAGVAKEKAVLPAAVPPTGIAIFPKHCTEFAAFRELDVQQMVVERADVIRPAQPPRDKV 264 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 FF + H + ++G F LR+ + Sbjct: 265 FFTVSHRDEHTV---VALAYGPPPPLTFTLRR-------------------------VSD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 MAQN + + L ++ + L+ + P + RG+ R G + +D YNANP Sbjct: 297 GMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRR---ENGRWLYLD-CYNANP 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ASM A+ ++P E R+ VLG M E+G + +H +L L L + G H Sbjct: 353 ASMTDALEAFYGMAPTAEP-RLFVLGGMEELGREAAGYHHELGRALRLRAGDQAVVIGEH 411 Query: 411 VLALK 415 A++ Sbjct: 412 APAVR 416 >gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] Length = 827 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/426 (24%), Positives = 179/426 (42%), Gaps = 18/426 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAV 61 ++T + + I H I + F+ DSRS+ PQ FFAI+ DGH +I Sbjct: 1 MYTLQTIAEKIHAHQCAIRSEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLY 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 G VV + F V DV+ +L K+A R ++ +TGS GKT Sbjct: 61 NHGVRSFVVKDEFDKLTQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L+ + SYN+ +GVPL++ +M + IFE G+S LGE+ + Sbjct: 121 IVKEFLYQLLADTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEE 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236 +++P I VIT I AH NFS I + K +F G ++ I N D+ + + L Sbjct: 181 VIKPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGCDR---IVYNMDEPEIVAGLQRLG 237 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 S A G K A +R + + + + + G + +N+ Sbjct: 238 LLSRARGWSR-----KDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENV 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + I+ + + S P E R + N +I++ YN + S+K A Sbjct: 293 LTCVLTTIIINPSLIDHPELFSKLEPVEMRLELIEGNKNN---LIINDVYNNDINSLKIA 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + Q + + + +L ++ + + + + E++ Y IS + G + A ++ Sbjct: 350 LDFQQQRATDADLEPVLILTEIQQSALNERPLYSRVGELIGKYRISKFYGIGKELFAYRE 409 Query: 417 ALPRSI 422 P I Sbjct: 410 FFPTEI 415 >gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289] gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289] Length = 826 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 118/445 (26%), Positives = 194/445 (43%), Gaps = 23/445 (5%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSRS+ P+E FFA+K DGH++I +G VV T V + P Sbjct: 30 DSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVET--VPEDWNKRYPDSNFLK 87 Query: 91 VLG---ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+G AL +LA R ++ ITGS GKT KE L LS SYN+ I Sbjct: 88 VVGSLEALQRLAERHRDEYLIPVVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNSQI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S GE+ L +++P I V T + AH NF +E Sbjct: 148 GVPLSVLLLNENTQVGVFEAGISQPGEMSALRDIIQPTIGVFTCLGSAHQENFPSLEAKC 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQC 266 K +F T I + DD + G K +S K + A F ++ K+ Sbjct: 208 KEKLHLF---HDTQAIVYSLDDEVLNRCLDEYDYKGEKLCWS-AKDEKAVFYIKSIEKKD 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEG 325 E + GK + I +N + T + ++ A+ + ++ P Sbjct: 264 VETTVTYTWKNGKEAQYRLPFIDDASVENSI-TCAVTALQLGVTPAALGERMAQLEPV-- 320 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R Q TLI++SYN++ S+ A+ +++ H RR +L D+ + G+ Sbjct: 321 -AMRLEVKEGQHGCTLINDSYNSDFNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTD 379 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---V 442 + + +A + + G +L + A H+ T++ FI S + + Sbjct: 380 KDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSAFRHLGKKHFFATVNA---FIHSDVFANL 436 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 +V+++K + GF RL LL+++ Sbjct: 437 HDEVILLKGARQFGFDRLTELLVKK 461 >gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium matruchotii ATCC 14266] gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium matruchotii ATCC 14266] Length = 496 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 129/475 (27%), Positives = 197/475 (41%), Gaps = 68/475 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDF-----------ILHAVQKGAGLVVV-------- 70 + DSR +A + F A+ G DGHD+ +L A G V+V Sbjct: 30 VEFDSRKVASGDLFVALSGVKVDGHDYAAAAMDRGAAGVLAARPVGVPAVIVPPATEVDH 89 Query: 71 -------NTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKA-TIIAITGSVGKT 120 +TD GS++ VL + KLA V +L ++ T+I ITGS GKT Sbjct: 90 HSYATEHDTD-----GSVAA-------VLEGMAKLARYVVDKLSARGLTVIGITGSAGKT 137 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+++ L T A GS+NN IG P T R + + E+ +G I L Sbjct: 138 STKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEATKYLVSEMSARSIGNIAHLAA 197 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + PHI V+ + AH+ F + IA K E+ E L G LN DD + + ++ Sbjct: 198 IAPPHIGVVLNVGTAHMGEFGSRDNIARTKGELVEALPADGIAVLNADDDYVAAMADRTS 257 Query: 241 ALGIKTIYSFG------KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMA 293 A T++SF + D +L + + + Q + +V G H Sbjct: 258 A----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGTDSQKVTHTAQVTLQIFGEHQV 313 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L D T + L + A N +ID++YNANP SM Sbjct: 314 ANALAAATAALAAGVDFATVAQGLRAHTVRSAHRMDVHHAGND--VIVIDDAYNANPESM 371 Query: 354 -KAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++ + +G G R IAVLG M E+G+ + + H++L ++ I V + G Sbjct: 372 RAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVELMRTVAEQGIDLVVVVGTDE 431 Query: 412 LALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 A R+I + L + L GDV++VK+SN+ YRL Sbjct: 432 NARAMINAAAAMGLRAIPTADTTQAATEVLKV---LGRGDVILVKASNA---YRL 480 >gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter sanguinis PC909] gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1] gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter sanguinis PC909] gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1] Length = 543 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 148/327 (45%), Gaps = 28/327 (8%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 LG +N + +I +TGS GKT+TK L LS T SYN +G+ + Sbjct: 179 LGFINDARRIVKSSKDLDVIGVTGSYGKTSTKHALNAILSEQFNTLMTPESYNTPMGITI 238 Query: 152 TLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 T+ P+ F I E+G +GEI L + P V+T++ P HL F I+ + Sbjct: 239 TIRNFLKPIHSKF-IAEMGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQT 297 Query: 210 KAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 K E+ E L + G F+N DD ++E + G +Y++G + AD++ + Sbjct: 298 KFELIEYLPEDGIGFINIDDENIRDYYE-----NKFQGKCKVYTYGIEREADYRASDIEV 352 Query: 266 CSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + V + +E +G H N L ++G+ L V+ A+ P Sbjct: 353 SEKGTTFNVHFKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVT 412 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + R G FT+ID+++N+NP K A+ VL Q++ G+RI + M ++G Sbjct: 413 HRLELRR----NGNFTIIDDAFNSNPVGSKMALEVLGQMN----GKRIVITPGMVDLG-- 462 Query: 385 SQSFHIDLAEVLSLY---NISHVWLSG 408 + DL + Y N +V L G Sbjct: 463 --TAQYDLNKAFGTYMKDNCDYVILVG 487 >gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus aquaticus Y51MC23] gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus aquaticus Y51MC23] Length = 436 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 109/421 (25%), Positives = 192/421 (45%), Gaps = 40/421 (9%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F A+ G G +F A+ KGA LV+ + A++ V+D AL +L A Sbjct: 53 FVALPGSRAHGREFAGEALAKGASLVLSDRPGRATVE--------VEDPYKALIRLGRAL 104 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R ++A+ GS GKTT KE L L A G+ N + ++P + Sbjct: 105 RDLFPGPVVAVGGSSGKTTAKEALAQGLG----FPAPEGNQNTAPPLARFFLKLPQEAPG 160 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + ELG+ +GE+ L L RP +AV+T + HL F ++ + + GL K Sbjct: 161 AVVELGVDRVGEMAELMELARPDLAVLTALGEEHLLAFGDLKGVVEEEM----GLLKAPM 216 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 ++ E+L A H + T Y FG+ A F+ + ++S + +G + Sbjct: 217 ALVSQQAK--EVLLAFGHRVDWPT-YGFGQ---ATFRGEGLELLPQES--RFRYRGLPVR 268 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V + G+G + M +L D+ + L+ GR +R G + Sbjct: 269 VPYPGLGPALGALAAMA--AAEVLGWDLLEVAERLAHLRLPPGRMERREI----GGVVFL 322 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 +++YNANP S+KA ++ L+ GR+ AVLG+M E+ E + H+++AE + ++ Sbjct: 323 NDAYNANPLSVKAGLAWLAAQP----GRKWAVLGEMRELAEKALELHLEVAEEAARLGLT 378 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++L F A A ++ E ++ ++++ + GD+V +K+S + G R++ Sbjct: 379 PLYLGPF---AKAQA---ALGGEAVEDLEAALAWLKARVRPGDLVYLKASRAVGLERILE 432 Query: 463 L 463 L Sbjct: 433 L 433 >gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Mycobacterium abscessus ATCC 19977] gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Mycobacterium abscessus] Length = 491 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 139/490 (28%), Positives = 209/490 (42%), Gaps = 73/490 (14%) Query: 24 QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-----------GAGLVVVN 71 Q V G + DSR ++P F A+ G DGHD A + G +VV Sbjct: 24 QARVTGTVEFDSRQVSPGGLFLALPGARADGHDHARGAAEAGAVAVLAARPVGVPAIVVP 83 Query: 72 TDMVA----------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VA S GS + + + + + A LR I+ ITGS GKT+ Sbjct: 84 PTGVARTEVSALEHDSDGSGAAVLAATAALAAEVARRLTARGLR----IVGITGSSGKTS 139 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+++ LS + + A GS+NN +G P T+ R F + EL G I L + Sbjct: 140 TKDLIAAVLSPLGEVVAPPGSFNNELGHPWTVLRATESTKFLVLELSARRPGNIAELAAI 199 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P I V+ + AHL F + IA K E+ + L G LN DD+ + AK+ A Sbjct: 200 APPSIGVVLNVGTAHLGEFGSRQAIADTKGELPQSLSGGGVAVLNADDAAVAAMAAKTPA 259 Query: 242 LGIKT-------IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 ++T I++ S + D ++ + Q + VQL VH G H Sbjct: 260 RVVRTSVHHPADIWATEVSVD-DLARARFTLHAGQDSVPVQL------AVH---GEHHVS 309 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + A + AL+ P R R + T+I+++YNANP SM Sbjct: 310 NALAAAAVALECGATLAQVAAALAGAGPVSRR--RMEVSTRDDGVTVINDAYNANPDSMM 367 Query: 355 AAISVLSQISPH-GEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A + L ++ H GE RR AVLG+M E+G + S H + ++S + + G Sbjct: 368 AGLKALVSMARHGGEPRRSWAVLGEMAELGPDAISEHDRIGRAAVRLDVSRLVVVGTG-- 425 Query: 413 ALKDALPRSIH-VHYSETMDGLFLFIQSSLVD---------------GDVVVVKSSNSCG 456 RS +H M+G + ++ LVD GDVV+VK+S S G Sbjct: 426 -------RSQRAMHAGAVMEGSW-GSEAVLVDDPAAAASLLASELAAGDVVLVKASRSAG 477 Query: 457 FYRLINLLLE 466 + + + LL+ Sbjct: 478 LWVVADELLK 487 >gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis MSMB43] Length = 269 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D AL LA R+R ++A+TGS GKTT KEM+ ++ A G++NN Sbjct: 85 DTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAAAVGEPARLATAGNFNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L + P +A++ H + +E + Sbjct: 145 VGLPLTLLRLTAAHRLAVIELGMNHPGETDTLAKIAAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSF 231 A A + L G DD++ Sbjct: 205 ALEHAAVIHALGPDGVAVFPADDAY 229 >gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus] Length = 680 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 24/363 (6%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DG+D + K GL++ T+ S ++P V D + A KLA+ R + K ++ Sbjct: 63 DGNDLV-DRQNKEIGLII--TESYISNLKFTVPQIIVKDSVQAFKKLAIYIRNQYKNPVV 119 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AITGS+GK++T+ ++T LS G+ N + + ++ + DF + E ++ Sbjct: 120 AITGSMGKSSTRMLITSLLSDFD-VLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSLNA 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + + ++P IA+IT I AH S F +++IA K +FEGL G +N D + Sbjct: 179 INYLENTAVYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGLADNGVAIVNNDTLY 238 Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 + L KA+ + + T YS K NAD + K + + Q K ++ + I Sbjct: 239 ADYLVDKARENTNNVLT-YSIKKDSNADLTVDNIKYNKGNIGLLINDQNKETDIYQLNTI 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTL 341 M N L ++ + L + + L F P KE + K ++ TL Sbjct: 298 SEGMVSNTLASMLTLKSLKLPIKKDL--LKNFKPFSKILALKEIQTKSHK-------LTL 348 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D+++NA+ +M AI + + G +I +G + ++G S H+ L + L N Sbjct: 349 LDDTHNASLPAMINAIRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCNA 408 Query: 402 SHV 404 ++ Sbjct: 409 DYI 411 >gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] Length = 826 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 121/447 (27%), Positives = 204/447 (45%), Gaps = 27/447 (6%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85 DSRS+ P+E FFA+K DGH++I +G VV N + + S GS + V Sbjct: 30 DSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEVVPDNWETLYS-GSNFLKV 88 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 G L AL +LA R I+ ITGS GKT KE L LS SYN+ Sbjct: 89 VGS---LEALQRLAERHRDEFLIPIVGITGSNGKTMVKEWLYQLLSPQMVVTRSPRSYNS 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPL++ + + G+FE G+S GE+ L +++P I V T++ AH NF IE Sbjct: 146 QIGVPLSVWLLNENTQVGVFEAGISKPGEMMALRDIIQPTIGVFTSLGTAHQENFPSIEA 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 K +F T I + DD A+ + G + +S K +A F ++ ++ Sbjct: 206 KCKEKLCLF---HDTQAIVYSMDDDVLTHCLAQYNYQGEQLSWS-TKHTDATFYIKSIEK 261 Query: 266 CSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPK 323 ++ + + GK + I +N + T +V++ A+ + ++ P Sbjct: 262 KDIETTVTYTWKGGKEAQYKLPFIDDASVENSI-TCAVVALHLGVTQAALAERMAQLEPV 320 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R Q TLI++SYN++ S+ A+ +++ H +R +L D+ + GE Sbjct: 321 ---AMRLEVKEGQHGCTLINDSYNSDYNSLDIALDFMNRRPDHKGRKRTLILSDILQSGE 377 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL-- 441 + + +A + + G +LA ++A H+ T++ FI S + Sbjct: 378 DDKELYNKVAFLCEKRGVDKFIGIGEGLLAERNAFKHLGEKHFFATINA---FIHSEVFA 434 Query: 442 -VDGDVVVVKSSNSCGFYRLINLLLEE 467 + +V+++K + GF L LL+++ Sbjct: 435 NLHDEVILLKGARQFGFDHLTELLVKK 461 >gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] Length = 828 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 177/407 (43%), Gaps = 15/407 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T ++ Q I IG + ++ + DSRS++ P+E FFA+ DG +I Sbjct: 3 YTIENIAQIIGARRIGEL-SATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYA 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPV-----FGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV+ + + +L P+ V L AL KLA R R + +I ITGS Sbjct: 62 RGVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSN 121 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ IGVPL++ +M + I E G+S GE+R Sbjct: 122 GKTVVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEAGISEPGEMRA 181 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++++P I ++T I AH NF ++E K +F+ + + N DD F + Sbjct: 182 LQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKDCD---VVIYNGDDEFISNCVS 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 KS + I + + K ++ + + + I +N L Sbjct: 239 KS-IFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDASIENSL 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L L + ++ P R + LI++SYN++ S+ A+ Sbjct: 298 NCLAACLYLMLPAGQITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSDLGSLDIAL 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 L + S +R +L D+ E G+ + + + +A++++ I V Sbjct: 355 DFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERV 401 >gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] Length = 825 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 113/450 (25%), Positives = 203/450 (45%), Gaps = 35/450 (7%) Query: 33 DSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFG 87 DSRS+ A + FFAIK DG ++ ++G VVN V ++ P Sbjct: 30 DSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRGVRNFVVNE--VPENYAVLYPNSNFLK 87 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + L AL +LA R +I ITGS GKT KE + LS SYN+ Sbjct: 88 VSNTLDALQRLAERHRDEFAIPVIGITGSNGKTMVKEWIYQLLSPSLIVTRSPRSYNSQT 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + G+FE G+S GE+ L +++P I ++TTI AH NF+ +EE Sbjct: 148 GVPLSVWLLTNNTQLGVFEAGISEPGEMDSLRDIIQPTIGILTTIGDAHQENFTSLEEKC 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 + K ++F + + N D++ + + G + S K+ + + K + Sbjct: 208 NEKLKLF---TDSKLLIYNEDNTLVKRCVEQFSFEGQRFSLSRQNEKSTLYVSKVLKNNA 264 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP----- 322 + S + +G I +N + L I L D + + ++ P Sbjct: 265 D-SVIYYSYKGVEGSYKIPFIDEASIENSIECLAIGLYLGIDKNAIEERMASLEPVAMRL 323 Query: 323 --KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 KEG R+ C TLI++SYN++ S+ A+ +S+ E +RI +L D+ + Sbjct: 324 EVKEG---RHDC-------TLINDSYNSDINSLDIALDFMSRRPDAKERQRILILSDIYQ 373 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 G+ + +++ ++ +++ G + A +D + + D FI S Sbjct: 374 TGKPLSQLYSEVSALMKQRSVNQFIGIGPEIYAHQDCFQQQNSSFFLTVQD----FIDSG 429 Query: 441 L---VDGDVVVVKSSNSCGFYRLINLLLEE 467 L + +++++K + GF ++ +LL+++ Sbjct: 430 LFTNLRNNIILLKGARRFGFDKITDLLVKK 459 >gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus erythropolis PR4] gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus erythropolis PR4] Length = 519 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 131/505 (25%), Positives = 206/505 (40%), Gaps = 82/505 (16%) Query: 23 PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD---------FILHAVQKGAGLVVVNT 72 P V G + DSR P F A+ G DGHD + + G+ + Sbjct: 23 PSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAEAAVAAGAVAVLAARPVGVPAIVV 82 Query: 73 DMVASIGSLSIPVFGVDD------VLGALNKLA--VAARLRSKA-------TIIAITGSV 117 V + G ++ + D VL AL LA V L ++ T++ +TGS Sbjct: 83 PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVVDELAAEGSASGGGLTLVGVTGSA 142 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+++ L + A GS+NN +G+P T+ R F + E+ +G + Sbjct: 143 GKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWTVLRADEKTRFLVLEMSARGVGHVGE 202 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFEL 234 LT + P I V+ + AHL F E IA AK E+ E L G LN DD Sbjct: 203 LTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAA 262 Query: 235 LKAKSHALGIKTIYSFGKSKNADF---------QLRK--WKQCSEQS-WMEVQLQGKSME 282 + +++ A I G+S++ D Q R CS+ S + + + G+ Sbjct: 263 MASRTKA----RIVFVGQSEDCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGE--- 315 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 HH A + + G+ A V KA S +R T++ Sbjct: 316 --HHVSNALAAAAVALENGLAVADIARVLEGTKAASA--------RRMEVTERADGVTVV 365 Query: 343 DESYNANPASMKAAISVLSQISPHGE--GRRI-AVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++SYNANP SM+AA+ L ++ GRR AVLG+M E+G S H + + Sbjct: 366 NDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEHDAIGRLAVRL 425 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------------GD 445 ++S + + G S +H M+G + + D GD Sbjct: 426 DVSKLIVVGTGRT--------SRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEPGD 477 Query: 446 VVVVKSSNSCGFYRLINLLLEEFPA 470 +V+VK+S S + + +L P+ Sbjct: 478 LVLVKASKSVELWTVAEAILAATPS 502 >gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 3_1_53] gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 3_1_53] Length = 523 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 20/279 (7%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166 +II ITGS GKT+ K +L LS + T GSYNN +G+ LT+ R + +F E Sbjct: 181 SIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGITLTI-RTKLQHLHEVFLCE 239 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 +G H+ EI L V+P V+T++ P HL+ F ++ I K ++ E L G F+N Sbjct: 240 MGADHVREIHDLMQFVKPRYGVVTSVGPQHLATFGSMDNILHEKMQMIECLPLDGIGFVN 299 Query: 227 YDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+++ + +K K H I FG ++AD++ + E + V + + Sbjct: 300 RDNAYIQSYTIKNKCH------IVWFGMHESADYRCSNIRYSEEGTSFTVTAENQEHSFH 353 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G H N +T I T + I AL+V ++ +R + + F TL+D+ Sbjct: 354 TRLLGKHNVVN--ITCAIAVAHTLGISWEIMALAV---EKLPYVEHRLQVRKSFCTLLDD 408 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +YN+NP + A+ V+ Q+ + +R + E+GE Sbjct: 409 AYNSNPEGARCALEVIKQM----KHKRFIITPGFLELGE 443 >gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545] Length = 624 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 22/237 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-FILHAVQ 62 ++T D+ A G +V ++ D+R +A + F A+ G D H+ F+ +Q Sbjct: 80 VFTASDIASATGGT---LVRDAAAGSVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQ 136 Query: 63 KGAGLVVVNTDMVASIGSLSIP-------VFGVDDVLGALNKLAVAARLR--SKATIIAI 113 NT+ V I S P V D AL +LA R R ++ + Sbjct: 137 --------NTECVGVISSRPPPGSWRKGYVQTACDPTTALQRLASDVRDRFPPDVVVVGV 188 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTT+ + AL+S+ + G++NNH+G+PLTL + P DV + ELGMS LG Sbjct: 189 TGSVGKTTTRALTARALASLGVVHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALG 248 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229 EI L + RP + ++T +APAHLS G I +A AKAE+F+G +N DD Sbjct: 249 EISTLAKIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADD 305 >gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC 23134] gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC 23134] Length = 525 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 22/345 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFEL 167 +I ITGS GKT+ K LT LS GSYN +GV +T+ P+ F + E+ Sbjct: 179 VIGITGSYGKTSVKHFLTRILSEKYNVVMTPGSYNTPMGVTITIRNHIKPIHEIF-VCEM 237 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G +G+I+ L +L P I ++T +A HL F IE I K E+ + L K G +LN+ Sbjct: 238 GAKQIGDIKELCNLAHPQIGILTAVADQHLDTFGSIENIQKGKFELIDALPKDGVGYLNF 297 Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285 D +E +K S ++ YS + +AD+Q R + ++ V + K ME+ Sbjct: 298 D---YEYVKNHSPIAHVENHAYSLHQP-DADYQARDLQYTAKGMQFSVYHKNEKVMELET 353 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L+ + + A+ P + R + R N G T++D++ Sbjct: 354 KLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVKHRMELKR---NPGGITILDDA 410 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +N+NPA K A++VL QI G+++ + M E+ E + L E ++ + + Sbjct: 411 FNSNPAGAKMALNVLKQIE---GGQKVIITPGMIELAEKEYELNKVLGEQIAEHVDYAIL 467 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + L +++ L +Y E L+I +L D + ++K Sbjct: 468 VGPKQTLPIQEGLKNK---NYPEDR----LYIARNLTDANQHLMK 505 >gi|53712185|ref|YP_098177.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis YCH46] gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46] Length = 848 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ P+E FFAI +G +I + Sbjct: 20 YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78 Query: 63 KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G VV ++ M L +P + L AL KLA R + Sbjct: 79 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 133 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE Sbjct: 134 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 193 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 194 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 250 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ KS + +S + + R K+ + + + + Sbjct: 251 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 309 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L D + ++ P R + LI++SYN Sbjct: 310 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 366 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 367 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 415 >gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5] gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16] gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5] gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16] Length = 848 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ P+E FFAI +G +I + Sbjct: 20 YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78 Query: 63 KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G VV ++ M L +P + L AL KLA R + Sbjct: 79 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 133 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE Sbjct: 134 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 193 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 194 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 250 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ KS + +S + + R K+ + + + + Sbjct: 251 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 309 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L D + ++ P R + LI++SYN Sbjct: 310 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 366 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 367 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 415 >gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] Length = 1035 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 118/271 (43%), Gaps = 33/271 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W F A + P+G S ID R +AP + + AI+G +DGH F A Sbjct: 496 WGFPLAEMAAAAGGVLHAPEGCAEAASRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAA 555 Query: 62 QKGAGLVVVNT--------------------DMVASIGSLS---------IPVFGVDDVL 92 GA ++V D ++GS++ +PV+G + Sbjct: 556 NAGACALMVERGRAPRDAAGNALKLAVIEVDDTRLALGSVARWHRARWGELPVYGCPNTG 615 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 G + R R+ ++ ITGS GKTTTKE++ ALS+ +A S+NN GVPLT Sbjct: 616 GDRDGDNGDERARAAKPVVGITGSAGKTTTKELIAAALSARYAVHATRASFNNETGVPLT 675 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L + + E+GM LG+I +L L P +A + AH+ E I K+E Sbjct: 676 LLALMPHHGAAVIEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVRGKSE 735 Query: 213 IFEGLEKTG-TIFLNYDDSFFELLKAKSHAL 242 IF L + G ++ D+ E +A L Sbjct: 736 IFAALGEGGVAVYPGDDERLSEYARAAGRVL 766 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 21/254 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR + P + F A++G DGH ++ + GA VVV + + + Sbjct: 26 IRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAVIDAGAAAVVVERAIEDPALAARVTQV 85 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL LA +A R + ++ ITG+ GKTT ++ L + T IG+ + Sbjct: 86 IVPEGARALGVLAARMAGRPGERMRLVGITGTNGKTTCSYLIESILRAHDATCGVIGTVS 145 Query: 145 NHIG-----VPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 G P T L M + E+ + L R V +A Sbjct: 146 YRYGAREVPAPYTTPTALILQEALGEMVAASCTHAVLEVSSAALAMERLSGTTV--EVAA 203 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T HL ++ +AK +F L + G ++ DD + A + + + Sbjct: 204 FTNFTQDHLDVHGSMDAYRAAKERLFRDHLAENGVAVIDVDDKAAPHMIAAAGERRVVRV 263 Query: 248 YSFGKSKNADFQLR 261 + + AD ++R Sbjct: 264 SARPGATAADAEVR 277 >gi|60680368|ref|YP_210512.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis NCTC 9343] gi|60491802|emb|CAH06560.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis NCTC 9343] gi|301161901|emb|CBW21445.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis 638R] Length = 840 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 30/409 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ P+E FFAI +G +I + Sbjct: 12 YTIESIVEKIGARRLGNKPAA-IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70 Query: 63 KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G VV ++ M L +P + L AL KLA R + Sbjct: 71 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLAEQHRGSFQ 125 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE Sbjct: 126 IPVVGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 185 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 186 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 242 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ KS + +S + + R K+ + + + + Sbjct: 243 DNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKK-EDHTVISYRYLEMDNTFCIPF 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L D + ++ P R + LI++SYN Sbjct: 302 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 358 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 359 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 407 >gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Treponema denticola F0402] Length = 430 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 26/388 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR++ F ++G + DGH +I A++ GA VV+ D + + + + Sbjct: 41 VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100 Query: 90 D-----VLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 D V L L AAR I ITGS GKTTTKE+L S T + Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFPNLYKIGITGSSGKTTTKEILASIYSKKYNTVSTK 160 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ N+ G+PL++ + + + GIFELGM+ GEI + ++ P+ A+IT I AH+ Sbjct: 161 GNLNSETGLPLSVFEVRPEHEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGIL 220 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + IA K EIF + F+ + F + LK ++++ + ++ Q Sbjct: 221 GTKQAIAEEKKEIFSFFKDDALGFIP-ECEFTDFLKDVPRG----SVFTVSDNDSSLVQ- 274 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + ++ + E++ G + +N L+ + + L Sbjct: 275 ----KVEDAGVLGSKIFYRGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAV 330 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P GR + + GF T + YNANP SMK+AI I + E + VL M E Sbjct: 331 RPLFGRSQ-----VLHGFVTYFLDCYNANPDSMKSAIEFCDSI--NTECAKHYVLASMLE 383 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSG 408 +G S H + E N +++ G Sbjct: 384 LGAKSDYEHKKIIEDALKSNADNLYFFG 411 >gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Deinococcus proteolyticus MRP] gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Deinococcus proteolyticus MRP] Length = 438 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 118/433 (27%), Positives = 192/433 (44%), Gaps = 61/433 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR AF A+ G G+ FI A+++GA V+ TD+ + L V V Sbjct: 24 LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVL--TDLPGAASRLPRTV-EVP 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNN 145 D L AL A R ++ ++ +TGSVGKTTTK + AL + + T I + Sbjct: 81 DSLAALTAWAQQERAKNP-LVVGVTGSVGKTTTKSYVAAALDAHYMPVYNTIPAIACFLT 139 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 G + P+ + E+G+ +GE+ L LVRP + V+T+I AHL S +E Sbjct: 140 EFGS----SERPL-----VVEMGIDRVGEMDRLISLVRPDVGVLTSIGAAHLEGLSSLEV 190 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA K +I L + N +F + IY F + Sbjct: 191 IAQEKGKI---LHSPRALVGNQARVWFPE----------QEIYGFSTPELP--------- 228 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-----NMLMTLGIVSILTADVDTAIKALSVF 320 + S ++++ + + + G H+ LG+ T V A V Sbjct: 229 -VQHSGQDLRVNEQGADFTYRGQTVHLPNAAQVQAEAAVLGLYLAETYGVPLAAAIQRVE 287 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + G RY+ ++ G +T+ID++YNA+P +++AA+S L GRRI+VLG M E Sbjct: 288 QVQVPSG-RYQ--IHSGRYTVIDDAYNASPLAVQAALSALQNF----RGRRISVLGTMLE 340 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G + H ++ S + + F V + L H H T+ L +++ Sbjct: 341 LGPTAPELHAEVGR--SACESADLC---FGVGPYAELL--GHHAH--RTVPELTAALKAE 391 Query: 441 LVDGDVVVVKSSN 453 + DGDV++VK+S Sbjct: 392 VQDGDVILVKASR 404 >gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603] gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603] Length = 686 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 185/409 (45%), Gaps = 22/409 (5%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 +G+D I + GL++ T V + IP V D + A LA+ R + K +I Sbjct: 63 EGNDLIDKS-NPNVGLIITET-YVEGL-EYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVI 119 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AITGS+GK++T+ MLT +L G+ N + + ++ + DF + E ++ Sbjct: 120 AITGSMGKSSTR-MLTASLLKDYPIQENRGNNNIRAAIYANMLKLIKNPDFAVIETSLNA 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + + ++P IAVIT I AH S F+ I+EIA KA IF GL + G +N D F Sbjct: 179 INHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMF 238 Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L +A + ++T YS G S ++ + + +E+++ G+ + Sbjct: 239 ADYLIDQAHQYTQNVQT-YSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFS 297 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 M N L + I+ L ++ + L F P K TLID+++NA+ Sbjct: 298 DGMISNTLAAILILKNL--NIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNAS 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +M AI + +G +I LG + ++G S+ H +L LS N Sbjct: 356 LPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNAD------- 408 Query: 410 HVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++L L D L ++ H+ Y + + ++ + VV++KSS Sbjct: 409 YILCLDDDLRPVVNKIKNKHITYYPNKELMINDLKYLCNEDSVVLLKSS 457 >gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011] gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011] Length = 833 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 106/411 (25%), Positives = 183/411 (44%), Gaps = 33/411 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T ++ + I+ IG Q +N + DSRS++ P E FFA+ DG +I Sbjct: 3 YTIEEITRIIKAKRIG-DNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYS 61 Query: 63 KGA-GLVVVNTD--MVASIGSLSIPVFG------VDDVLGALNKLAVAARLRSKATIIAI 113 +G V+ N + ++A S I + V++ L AL KLA R + ++ I Sbjct: 62 RGVRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGI 121 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKT KE L L+S KK SYN+ IGVPL+L +M D D I E G+S Sbjct: 122 TGSNGKTVVKEWLHQILASSKKIVRSPRSYNSQIGVPLSLWQMHSDADVAIIEAGISQPD 181 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+ L ++RP I V+T + AH NF ++E K ++F+ + + D+ Sbjct: 182 EMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHCD---VVIYEADNDLIS 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +KS + +S + F + ++ ++ + + G I Sbjct: 239 NCMSKSMLTSREIAWSRYDMERPLF-ISGIQKDENETTISFRYLGLDNYYKIPFIDEASI 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESY 346 +N + L I L D ++ P KEG+ C +I++SY Sbjct: 298 ENSIQCLAICLYLMIPADQIRAGMAQLEPIAMRLEVKEGKNN---C-------LIINDSY 347 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 N++ +S+ A+ + S +R +L D+ E G+ + + + +++++S Sbjct: 348 NSDLSSLDIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLIS 398 >gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 840 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/409 (24%), Positives = 177/409 (43%), Gaps = 30/409 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T +++ +G P ++ + DSRS+ P+E FFAI +G +I + Sbjct: 12 YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70 Query: 63 KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G VV ++ M L +P + L AL KL+ R + Sbjct: 71 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLSEQHRGSFQ 125 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE Sbjct: 126 IPVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 185 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 186 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 242 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ KS + +S K + + ++ + + + + Sbjct: 243 DNEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPF 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L D + ++ P R + LI++SYN Sbjct: 302 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 358 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 359 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 407 >gi|255007708|ref|ZP_05279834.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis 3_1_12] Length = 831 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/409 (24%), Positives = 177/409 (43%), Gaps = 30/409 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T +++ +G P ++ + DSRS+ P+E FFAI +G +I + Sbjct: 3 YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 61 Query: 63 KGAGLVVVNTD---------------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 +G VV ++ M L +P + L AL KL+ R + Sbjct: 62 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVP-----NTLKALQKLSEQHRGSFQ 116 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE Sbjct: 117 IPVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEA 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 177 GISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKDCD---VVIYNG 233 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ KS + +S K + + ++ + + + + Sbjct: 234 DNEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPF 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L D + ++ P R + LI++SYN Sbjct: 293 IDDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYN 349 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 350 SDLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLV 398 >gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38] gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38] Length = 780 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 118/428 (27%), Positives = 191/428 (44%), Gaps = 26/428 (6%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAV 100 FFAIKG ++D H +I + KG VV + + + I V++ L AL + A+ Sbjct: 9 FFAIKGQNHDAHLYIEELISKGVRYFVVEYIPEHLYEKANFII----VENSLKALQQTAI 64 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R + + ITGS GKT KE L LS SYN+ +GVPL++ + Sbjct: 65 GYRKKFDFPFVGITGSNGKTIVKEWLNFLLSPNHLIVRNPKSYNSQVGVPLSVLGVEGIY 124 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 DFG+FE G+S E+ L ++ P ++T I AH F E K ++FE Sbjct: 125 DFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFPNREAKIKEKIKLFEN---C 181 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 IFL ++S LL K K +SF S L K+ + + + + S Sbjct: 182 TDIFLEKNESIEVLLSNKIQ----KHTWSF--SDETAHLLVTQKKENNTTQLTFKNSTTS 235 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V+ + +N + + + L D+ K + +P E R + + N Sbjct: 236 FSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGELYPVELRLQAKKGINN---CL 292 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID+SY+ + S+K A+ L Q H ++ +L D+ G S++ + + +LS Sbjct: 293 VIDDSYSLDYPSLKIALDFLEQQKLH--DKKTIILSDIFNSGIASETLYNQVKNLLSKNK 350 Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 I + G + LKD LP I ++ T + L F S + ++VK S S F+ Sbjct: 351 IGRIITIGEIINKHLKD-LPNVI--SFATTQEFLQQFNTQSF-QNETILVKGSRSFNFHE 406 Query: 460 LINLLLEE 467 ++ +LLEE Sbjct: 407 IV-VLLEE 413 >gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] Length = 831 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 18/445 (4%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88 DSRS+ P+E FFA+K DGH++I ++G VV T++ A+ S V Sbjct: 30 DSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVV-TEVPANCASDYPDANFLRV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L AL +LA R ++ ITGS GKT KE L LS SYN+ IG Sbjct: 89 VNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQLLSPQMCVTRSPRSYNSQIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ M + G+FE G+S GE+ L +++P IAV+T I AH NF + Sbjct: 149 VPLSVWLMNEQTEVGVFEAGISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCK 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263 K +F T+ N DD E L + +S G + G + ++A ++ Sbjct: 209 EKLVLFHDAR---TVVYNADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSI 265 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322 ++ ++S V K E + I + ++ ++ I +I+ + A L Sbjct: 266 EK--KESATTVTYIYKGGEENWYSIPFIDDASICNSI-ICAIVALRIGIAPDELDRRMQG 322 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R Q TLI++SYN++ S+ A+ +++ H R +L D+ + G Sbjct: 323 IEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSG 382 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + + +++++ + G + A + + + + + + + SL Sbjct: 383 EEPTALYQEVSDLARERGVVKFIGIGPEICAQSERIQIAEKDFFGSVEEFIVSDVFRSLR 442 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 D +V+++K + GF RL LL+++ Sbjct: 443 D-EVILLKGARRFGFDRLTELLVKK 466 >gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] Length = 831 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 18/445 (4%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88 DSRS+ P+E FFA+K DGH++I ++G VV T++ A+ S V Sbjct: 30 DSRSLCFPEETLFFALKSERNDGHNYIPELYRRGVKNFVV-TEVPANCASDYPDANFLRV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L AL +LA R ++ ITGS GKT KE L LS SYN+ IG Sbjct: 89 VNTLEALQRLAERHRDEFNIPVVGITGSNGKTMVKEWLYQLLSPQMCVTRSPRSYNSQIG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ M + G+FE G+S GE+ L +++P IAV+T I AH NF + Sbjct: 149 VPLSVWLMNEQTEVGVFEAGISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCK 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263 K +F T+ N DD E L + +S G + G + ++A ++ Sbjct: 209 EKLVLFHDAR---TVVYNADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSI 265 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHP 322 ++ ++S V K E + I + ++ ++ I +I+ + A L Sbjct: 266 EK--KESATTVTYIYKGGEENWYSIPFIDDASICNSI-ICAIVALRIGIAPDELDRRMQG 322 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R Q TLI++SYN++ S+ A+ +++ H R +L D+ + G Sbjct: 323 IEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHKGRRHTLILSDIFQSG 382 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + + +++++ + G + A + + + + + + + SL Sbjct: 383 EEPTALYQEVSDLARERGVVKFIGIGPEICAQSERIQIAEKDFFGSVEEFIVSDVFRSLR 442 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 D +V+++K + GF RL LL+++ Sbjct: 443 D-EVILLKGARRFGFDRLTELLVKK 466 >gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 303 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 11/265 (4%) Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + Sbjct: 1 NDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLA 60 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKW 263 +A AK EI+ GL + G +N D++ + L +S +G + ++ F + N+DF Sbjct: 61 GVAKAKGEIYTGLPENGIAIMNADNN--DWLNWQS-IIGDRQVWRFSPNAANSDFTAANI 117 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S + +Q S++V+ G H N L + + A + L+ Sbjct: 118 HVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAV 177 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G Sbjct: 178 PGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGA 230 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 S++ H+ + E I V +G Sbjct: 231 ESEACHLQVGEAAKAAGIDRVLSTG 255 >gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera radiovictrix DSM 17093] gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera radiovictrix DSM 17093] Length = 459 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 207/456 (45%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 G++ S + P +AFFA+ G G + A+Q GA +V +D G L++P Sbjct: 26 ARGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIV--SDRPHPRG-LTVP-- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L +L AR + +I +TGS GKT+T+ +L ++ +A G++N Sbjct: 81 ---DPARLLLQLGRVARAALQGPVIGVTGSAGKTSTRALL----AAALGAHATRGNFNT- 132 Query: 147 IGVPLTLARMPVDV---------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 PL LA+ V+ D + ELG+ H GE+ L L RP + V+T IAPAHL Sbjct: 133 ---PLALAQTLVEAWLEDRTGAHDRLVLELGIDHTGEMDELVELTRPTLGVVTLIAPAHL 189 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSF-GKSKN 255 +E +A K ++ G+ Y F L A+ AL G T+Y G+ Sbjct: 190 DGLGSVEGVAREKFKLLTGVRHAWVSAQAY--PF--LTPAQRAALQGRLTVYGLDGRETP 245 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + ++ + L + V +A+N L L + + L D A Sbjct: 246 TGGEAKRVTGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAAHLGVDPAAAAA 305 Query: 316 AL--SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRI 372 L +V P GR +R++ G TL+D++YN+NPAS++AA++ L+ + PH Sbjct: 306 RLQGAVLEP--GRLQRHQL----GALTLLDDAYNSNPASVRAALTALAALPRPH-----T 354 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 AVLGDM E+G S H LAE + V G + AL +A PR++++ + ++ Sbjct: 355 AVLGDMLELGAASAELHRALAE--DTAALDAVVAVGPAMRALAEADPRAVYLEAFD-LEA 411 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + ++VK S RL LL + Sbjct: 412 LLALVPER----GTLLVKGSRGVRLERLTEALLRRY 443 >gi|110640090|ref|YP_680300.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Cytophaga hutchinsonii ATCC 33406] gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406] Length = 842 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 121/468 (25%), Positives = 199/468 (42%), Gaps = 45/468 (9%) Query: 14 IQGHSI--GIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVV 69 +QG I P F+ + IDSR + AP A FFAI G H+DGH I +KG + + Sbjct: 35 VQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHAHITEMYKKGVRIFI 94 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEML 126 V SI IP V +++ L A R K I+AITGS KT KE L Sbjct: 95 VE----KSISLNEIPQAACIRVKSSVSALQACAAYRRKQLDIPIVAITGSNAKTIVKEWL 150 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + +++ SYN+ IGVPL++ + GIFE G+S E++ L ++ P I Sbjct: 151 SQTVAADYSVVKSPRSYNSQIGVPLSVWALNERHTIGIFEAGISTTKEMQALQKVIEPTI 210 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + T I AH F EE K ++F + + + D E + A+ A + T Sbjct: 211 GIFTNIGSAHDKGFKNREEKIQEKLKLFADCK----VVIYCSDH--EEIHAEITAQHLPT 264 Query: 247 I-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---------HMAQNM 296 +S S ++ + + + + Q++ K+ E H G Y A ++ Sbjct: 265 FNWSLQSSATIEYSI------AAKDSFQTQIEVKTKE--HQGFFYLPFVDDASIENALHV 316 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 TL + +V I L + G R LID+SYN + A + A Sbjct: 317 ATTLFYLGYSIQEVSRKISGL------QAVGMRLELKEANNDCYLIDDSYNNDLAGLSIA 370 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L + E + + +L D+ E G S + ++A L+ + V G + LK Sbjct: 371 LDFLEHVK-QSEVKTV-ILSDVLESGLDSAVLYKEVASYLTTAQVQRVIAIGSQITELKK 428 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + Y T + + ++ + ++V+VK + F ++++ L Sbjct: 429 WY--NGRAEYYPTTEAFIKDLTKTVFEKEIVLVKGARIFQFEKIVSRL 474 >gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435] gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 686 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/363 (25%), Positives = 166/363 (45%), Gaps = 23/363 (6%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DG+D + + GL++ T+ S IP V+D + A +LA+ R + +I Sbjct: 63 DGNDLV-NKENGEIGLII--TENYISDLKFEIPQIIVEDSVQAFKQLAIYIRNQYTNPVI 119 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AITGS+GK++T+ ML +L G+ N + + ++ + DF + E M+ Sbjct: 120 AITGSMGKSSTR-MLITSLLGDYNVLENRGNNNVRAAIYNNMLKLIKNPDFAVIETSMNA 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDS 230 + + + ++P IA+IT I AH S F +++IA K IF+GL TG +N D Sbjct: 179 INYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIFDGLSSTTGVAIINKDTL 238 Query: 231 FFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 + + L K+H + YS K AD + K + + Q E+ + I Sbjct: 239 YADYLIDKAHENASNVLTYSINKDAKADLTVDNIKYNKGSIELSITNQENKSEIYRLNTI 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTL 341 M N L + I+++ + ++ + L+ F P KE K ++ TL Sbjct: 299 SEGMVSNTLAS--ILTLKSLNLPIKQELLNDFKPFSKILALKEIHAKTHK-------LTL 349 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D+++NA+ +M AI + + G +I +G + ++G S H+ L E L N Sbjct: 350 LDDTHNASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLKLVEELENSNA 409 Query: 402 SHV 404 ++ Sbjct: 410 DYI 412 >gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus geothermalis DSM 11300] gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus geothermalis DSM 11300] Length = 429 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 117/451 (25%), Positives = 188/451 (41%), Gaps = 92/451 (20%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR +P+ AF A+ G G+ F+ A+ GA V+ + D+ ++ +P Sbjct: 24 LTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTDLDVPRAV---RVPSQAGQ 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------IKKTYACIGS 142 AL A A R ++ ++ ITGSVGKTT K AL++ AC Sbjct: 81 GAREALFAWARAERAKNP-LVVGITGSVGKTTAKSYAAAALNAHFMPVYNTMPAIACFLI 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 G PL + E+G+ +GE+ L LVRP + V+T I AHL Sbjct: 140 EFGASGAPL------------VVEMGIDRVGEMAELVDLVRPDVGVVTAIGAAHLEQLGS 187 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +E +A K I +G + G + F H Y FG+ Sbjct: 188 LEGVAREKGVILQG--RRGLVGTQAAPWF-------PH----TPTYGFGEG--------- 225 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV------------ 310 V G+++ V G + Q + +TL + S + A+ Sbjct: 226 -----------VTYAGEALTVSPQGAQFTF-QGVPVTLPLASRVQAEAAVLGLALALEAG 273 Query: 311 ----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A + +V P G RYR ++ G FT+ID++YNA+P ++ AA+ L+ Sbjct: 274 LPLPEAAQRLAAVQVP----GGRYR--VHPGRFTVIDDAYNASPLAVTAALDALATFG-- 325 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 GRRI+VLG M E+G + H + V + + G L + R++ Sbjct: 326 --GRRISVLGRMLELGATERELHAQIG-VHARQKADLTYGVGAFAAELGERAYRTV---- 378 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 E ++ L ++ DGDVV+VK+S + Sbjct: 379 PELLEDLLAEVR----DGDVVLVKASRGISW 405 >gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens QYMF] Length = 403 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 173/376 (46%), Gaps = 38/376 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGM 169 IAITGS GKTTTKEML L + K + + N ARM G + E GM Sbjct: 46 IAITGSAGKTTTKEMLASILQTKWKIFKSKENKNFQKNTQ-KHARMIKPWHQGVVLEFGM 104 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + ++P+IAVIT + AH F + I+ A AK+E+ + ++ G +++N D Sbjct: 105 GEANTGKMHCSHIQPNIAVITNVGSAHYGVFGNSIKLTAKAKSELIKYMKPEGILYINND 164 Query: 229 DSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ +LL+ K G K I++ +D+Q K + +V+L + + Sbjct: 165 DNNSKLLQIK----GFKGEIFTVSIKNKSDYQAVNIKYVDQGMTFQVKLDDQLEDFFIPT 220 Query: 288 IGYHMAQNMLMTLGI----------VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 GYH N L +G+ + + + + ++ L+ + G Sbjct: 221 FGYHNVINALFAIGVSHHQKFSPSEIKVGLKNYEVPVRRLNHYELPNG------------ 268 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++D+SY+ANP + KAAI VL ++ +++ +LG M E+GE S H ++ + L+ Sbjct: 269 -LVILDDSYSANPEATKAAIDVLVELGK--IKKKLVILGSMLELGEYSIEGHKEVGKYLA 325 Query: 398 LYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + + G A++ P S + ++++ + + L++Q + ++VK S Sbjct: 326 QNKVDKIVIIGKEARWIGKGAVEAGYPPSRILLFTKSRNKMHLYLQKLIKPNMAILVKGS 385 Query: 453 NSCGFYRLINLLLEEF 468 + +N LL+ F Sbjct: 386 KLMQMNKTLNYLLKNF 401 >gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] Length = 599 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 101/357 (28%), Positives = 156/357 (43%), Gaps = 42/357 (11%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 D + A +KG G++V+ ++ + ++ V GV V A +L A R R KA I+ Sbjct: 52 DPAGYAARAARKGVGVLVLPDRTASAAANAAVAVIGVGSVRDAYFRLVKAYRHRCKARIV 111 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 A+TGS GKTTTKEM+ L+ + +YN G+ TL R+ FG+ ++G Sbjct: 112 AVTGSAGKTTTKEMIAAVLAEAGEVQKNWRNYNGPYGIGYTLFRLRPHHTFGVVKIGAYI 171 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 I F LV P + VIT I H + G E + K ++ L K G + LN DD Sbjct: 172 PNSIDFGARLVAPEVGVITCIGLGHAAALGGGEGVRREKEKLLTHLPKKGLLVLNGDDPG 231 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-------------CSEQSWMEVQLQG 278 + ++ + + + D L W + C + +EV+L G Sbjct: 232 CRSVDLSRCQAPVRWVGV--ECEREDLSL--WAERIQVHRDGTRFLLCGLEREIEVELPG 287 Query: 279 KSME------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ +G HM L I S LT T + F P G+R Sbjct: 288 FFGRPAVIDALLAAAVGDHMG---LPPESIASGLTKVEYTPRR----FSPIRLPGRRL-- 338 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 LID +YNANP SM A++ ++++ G+G +A+LG M +GE + H Sbjct: 339 --------LIDATYNANPHSMSASLESAAKLAVEGKG--LALLGTMSNLGEEAPEQH 385 >gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 830 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88 DSRS++ P+E FFA+ G +I +G V+ + I G L + G Sbjct: 14 DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 73 Query: 89 DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 DD L AL KLA A R + K +I ITGS GKT KE L Sbjct: 74 DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 133 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 134 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 193 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 194 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 250 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N+L L L Sbjct: 251 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 309 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 310 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 359 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 360 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 394 >gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310] gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310] Length = 824 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 122/445 (27%), Positives = 197/445 (44%), Gaps = 25/445 (5%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF- 86 I DSRS+ P+E FFA+ +GH +I Q+G VV+ V F Sbjct: 27 ILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGVRNFVVSAVPVGYDKLYPEANFL 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D AL +LA R I+ ITGS GKT KE L LS SYN+ Sbjct: 87 KVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTMVKEWLYQLLSPQFYVTRSPRSYNSQ 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPL++ M G+FE G+S GE+ L +++P IAV+T + AH NF IE+ Sbjct: 147 IGVPLSVWLMNEQTQVGVFEAGISKPGEMNALRDIIQPTIAVLTNLGDAHQENFGLIEDK 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K +F E T+ DD + + G + +S K K A F ++ ++ Sbjct: 207 CREKLILFHDAE---TLIYPADDEIISKVITEYDYPGERLYWSM-KDKEAPFFVKFVEKK 262 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADV-DTAIKALSVFHP 322 + + +GK I N ++ IVS+ +T DV D ++ L Sbjct: 263 ETMTTVTYIYKGKEDWYSLPFIDEASVVNSIVC-AIVSLHLGVTPDVLDQRMQQL----- 316 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R Q TLI++SYN++ S+ A+ +++ H R VL D+ + G Sbjct: 317 -EPVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRSRTLVLSDIDQSG 375 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + + +++ + ++ + G + +DA+ + ++ T++ FI+S + Sbjct: 376 REASELYREVSNLAVKRGVTKLIGIGPQLTEQQDAI-KVTQKYFFPTVEA---FIKSGVF 431 Query: 443 DG---DVVVVKSSNSCGFYRLINLL 464 +V+++K + GF L LL Sbjct: 432 QALRDEVILLKGARRFGFDSLSELL 456 >gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] Length = 846 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88 DSRS++ P+E FFA+ G +I +G V+ + I G L + G Sbjct: 30 DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 89 Query: 89 DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 DD L AL KLA A R + K +I ITGS GKT KE L Sbjct: 90 DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N+L L L Sbjct: 267 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 325 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410 >gi|260171780|ref|ZP_05758192.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. D2] gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 846 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88 DSRS++ P+E FFA+ G +I +G V+ + I G L + G Sbjct: 30 DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 89 Query: 89 DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 DD L AL KLA A R + K +I ITGS GKT KE L Sbjct: 90 DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N+L L L Sbjct: 267 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 325 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410 >gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] Length = 820 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 171/395 (43%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGV 88 DSRS++ P+E FFA+ G +I +G V+ + I G L + G Sbjct: 4 DSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSGQ 63 Query: 89 DD--------------------VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 DD L AL KLA A R + K +I ITGS GKT KE L Sbjct: 64 DDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLHQ 123 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 124 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 184 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 240 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N+L L L Sbjct: 241 SRRDIERPLYISRVIKK-EDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMT 299 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 300 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 349 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 350 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 384 >gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D- alanine ligase [Thermus thermophilus HB27] gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D- alanine ligase [Thermus thermophilus HB27] Length = 438 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 113/446 (25%), Positives = 194/446 (43%), Gaps = 56/446 (12%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V + S + P F A+ G G FI A+ +GA LV+ + A++ Sbjct: 35 GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPATLE----- 89 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL +L A R ++A+ GS GKTTTKE L L A G+ N Sbjct: 90 ---VEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLG----LPAPPGNLN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + + + ELG+ GE+ L L +PH+AV+T + HL F +E Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLE 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG----KSKNAD 257 + +A + + T + +A LG++ +Y F + ++ + Sbjct: 203 KAVQEEAHLL----RAPTALVGE--------QAAPLVLGLREDLLVYGFAEGTFRGRDLE 250 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 LR+ + + G + V + G+G A L L +L ++ + L Sbjct: 251 LGLRESR---------FRYGGLHVRVPYPGLG--PAYGALAALAAAEVLGLSLEEVAERL 299 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S GR + G ++++YNANP S+KA + L+ GR+ AVLG+ Sbjct: 300 SRLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP----GRKWAVLGE 351 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H+++AE + +S ++L G H A A + E+++ ++ Sbjct: 352 MRELGRESLRLHLEVAEEAARLGLSPLYL-GPH--ARHQA---AFSGEAVESLEEALAWL 405 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 ++ + GD+V +K+S + G R++ L Sbjct: 406 KARVAPGDLVYLKASRAVGLERIVEL 431 >gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 730 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 177/378 (46%), Gaps = 23/378 (6%) Query: 101 AARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 + ++ +K T IIAITGS GKTTTK + LS + +N + Sbjct: 363 SKQVEAKKTLPIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEEIND 422 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217 + E GM++ G I +++P+I+++T I AH+ NF G + +A AK+E+ G+ Sbjct: 423 SHQAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGM 482 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 ++ G + +N DD L+ + I T+ G K AD++ + +++L Sbjct: 483 DQQGLLIVNQDDDNSRYLETQQFKGKIITV---GIKKEADYRAYDLQYKDVGMSFKMKLH 539 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCAL 334 G+ +E+ +G H N L + + +L D+ + + F R Y C Sbjct: 540 GQEIELYIPILGEHHVYNALNAVAVADLLGFSPLDIQSGLN----FKKPPRRLTIYNCRD 595 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + T+ID++ +++P ++AA+ VL+ I+ + R++A++G M E+G L + + + E Sbjct: 596 D---ITVIDDTVHSHPQGVRAALDVLTNIATN---RKVAIIGQMRELGVLREEEYRKVGE 649 Query: 395 VLSLYNISHVWLSGFHVLALKD-ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + I GF + + A+ + + VH+ D L + ++ + D ++VK Sbjct: 650 YVYDIGIDEFITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVK 709 Query: 451 SSNSCGFYRLINLLLEEF 468 ++ + + L + F Sbjct: 710 GASKTNMFETVKFLDQTF 727 >gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132] gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132] Length = 802 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 159/371 (42%), Gaps = 55/371 (14%) Query: 33 DSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPV 85 DSR ++ ++ FFAIKG +DGH FI KG VV N + + + Sbjct: 16 DSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVKA 75 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VD + L ++A R + +I ITGS GKT KE L L SYN+ Sbjct: 76 LLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDKDFDIVKSPRSYNS 135 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV L++ M GIFE G+S GE++ L +++P I V T I +H F + Sbjct: 136 QIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKIIQPTIGVFTNIGSSHSEGFESDRQ 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 K ++F K+ T+ D S E + + +F +N + ++ W + Sbjct: 196 KIREKLQLF---VKSETLIYCRDYSEIE-----------EEVNAFLLEQNPNLKIVSWSK 241 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNMLMTLGIVSILTADVDTAIKALS 318 +V+++ + G Y + +N++ I++ L+ D ++ L Sbjct: 242 A------DVEVKDGKAYFLWKGEKYELPFIDAASVENLVHC--ILAALSVKEDWDVRRLR 293 Query: 319 VFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +P KEGR Y +ID++YN + +K A+ +SQ H + Sbjct: 294 FLNPVEMRLELKEGREDNY----------IIDDTYNNDLGGLKMALQFMSQ--AHTLRGK 341 Query: 372 IAVLGDMCEMG 382 + +L DM + G Sbjct: 342 VLILSDMFQTG 352 >gi|23011653|ref|ZP_00051948.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 194 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 94/164 (57%) Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H+A N L L + L AD+ A +L+ P GRG+R + G LIDESYNANP Sbjct: 2 HVAMNSLGVLACIHALGADLARAALSLAGLKPPVGRGERTALRIGGGEAFLIDESYNANP 61 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 AS++AA + L+ + +GRRIAVLGDM E+G ++ H +LAE ++ I V+ +G Sbjct: 62 ASIRAAFATLAGVETGPKGRRIAVLGDMKELGAAGEAHHRELAEAVAANGIDLVFTAGPL 121 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + L +ALP ++ + L + ++L GD V+VK SNS Sbjct: 122 MAHLFEALPVAVRGTAAPKAAELTDAVLATLRPGDAVMVKGSNS 165 >gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126] gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126] Length = 821 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 175/398 (43%), Gaps = 47/398 (11%) Query: 27 VNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + I IDSR+ + F AIKG +DGH+FI G +++ ++ Sbjct: 25 IENIFIDSRNAVSNIKNLFIAIKGERHDGHNFIADLYSNGIRNFIIDEEIKVD-KYPEAN 83 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 F ++ + AL LA R K +I ITGS GKT KE L + S+ Y SYN Sbjct: 84 FFKTENSINALQALAGYKRKNFKGNLIGITGSNGKTIVKEWLAKLIESVYSVYRSPRSYN 143 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + +GVPL+L + D+ I E G+S +GE+ L +++P I + T + AH F +E Sbjct: 144 SQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKPKIGIYTNLGTAHDEGFPSLE 203 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 E A KA++F + + TI D F E+ A ++S K + +F ++ Sbjct: 204 EKAHQKAQLF---KDSSTIIFCKD--FPEISNA---------LHSLPKLEEKEFIGWSFE 249 Query: 265 QCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILT---------------- 307 + ++E + + + + +H+ Q + +T Sbjct: 250 DNTSNYFVETEGRNNGTAIRIPFEEQFHIFQVPFQDYASLENITHCLLLLLHEGLPIKVI 309 Query: 308 ADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + IK+L++ K+G+ Y L+D+SYN + + A+ SQ Sbjct: 310 QNTLNDIKSLNMRLETKKGKNSTY----------LVDDSYNNDLVGLDTALQFFSQQK-- 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +RI +L D+ E G S+ + LA+ ++L ++ V Sbjct: 358 QFQKRILILSDLLETGLSSEVLYQQLADRIALEKLNLV 395 >gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5] Length = 792 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 4/188 (2%) Query: 27 VNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V + DSRS++ + F A++G ++D HDFI +G +V + AS + Sbjct: 23 VRSVVTDSRSLSCELGCRPMFVAMRGANHDSHDFIADMQSRGVRAFLVERGVEASSCTGE 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VD+ + AL +LA R + + T++ ITGS GKT KE + L K Y S Sbjct: 83 CGFVQVDNAIEALQRLAAYHRAQFRGTVVGITGSNGKTVIKEWIAEELPEGMKYYRSPKS 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YN+ +GVPL++ + D + IFE G+S GE+ L ++RP + T+I AH NF Sbjct: 143 YNSQLGVPLSVLMLEGDEELAIFEAGISKPGEMERLERIIRPDAVIFTSIGDAHQENFIN 202 Query: 203 IEEIASAK 210 +E+ K Sbjct: 203 LEQKCDEK 210 >gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis VCU121] Length = 686 Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 107/409 (26%), Positives = 184/409 (44%), Gaps = 22/409 (5%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 +G+D I + GL++ T V + IP V D + A LA+ R + K +I Sbjct: 63 EGNDLIDKS-NPNVGLIITET-YVEGL-EYKIPQLIVQDSIKAFKTLAIYIRNQYKNPVI 119 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AITGS+GK++T+ MLT +L G+ N + + ++ + F + E ++ Sbjct: 120 AITGSMGKSSTR-MLTASLLKDYPIQENRGNNNIRAAIYANMLKLIKNPYFAVIETSLNA 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + + ++P IAVIT I AH S F+ I+EIA KA IF GL + G +N D F Sbjct: 179 INHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIINGDTMF 238 Query: 232 FELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L +A + ++T YS G S ++ + + +E+++ G+ + Sbjct: 239 ADYLIDQAHQYTQNVQT-YSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQINTFS 297 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 M N L + I+ L ++ + L F P K TLID+++NA+ Sbjct: 298 DGMISNTLAAILILKNL--NIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDTHNAS 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +M AI + +G +I LG + ++G S+ H +L LS N Sbjct: 356 LPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNAD------- 408 Query: 410 HVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++L L D L ++ H+ Y + + ++ + VV++KSS Sbjct: 409 YILCLDDDLRPVVNKIKNKHITYYPNKELMINDLKYLCNEDSVVLLKSS 457 >gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus thermophilus HB8] gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus thermophilus HB8] Length = 438 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 112/446 (25%), Positives = 194/446 (43%), Gaps = 56/446 (12%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V + S + P F A+ G G FI A+ +GA LV+ + A++ Sbjct: 35 GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARGASLVLADQAGPATLE----- 89 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL +L A R ++A+ GS GKTTTKE L L A G+ N Sbjct: 90 ---VEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKEALAQGLG----LPAPPGNLN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + + + ELG+ GE+ L L +PH+AV+T + HL F +E Sbjct: 143 TAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLE 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG----KSKNAD 257 + +A + + T + +A LG++ +Y F + ++ + Sbjct: 203 KAVQEEAHLL----RAPTALVGE--------QAAPLVLGLREDLLVYGFAEGTFRGRDLE 250 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 LR+ + + G + V + G+G A L L +L ++ + L Sbjct: 251 LGLRESR---------FRYGGLHVRVPYPGLG--PAYGALAALAAAEVLGLSLEEVAERL 299 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + GR + G ++++YNANP S+KA + L+ GR+ AVLG+ Sbjct: 300 ARLTLPPGRMETREV----GGVVFVNDAYNANPLSVKAGLRWLAAQP----GRKWAVLGE 351 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H+++AE + +S ++L G H A A + E+++ ++ Sbjct: 352 MRELGRESLRLHLEVAEEAARLGLSPLYL-GPH--ARHQA---AFSGEAVESLEEALAWL 405 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 ++ + GD+V +K+S + G R++ L Sbjct: 406 KARVAPGDLVYLKASRAVGLERIVEL 431 >gi|161511189|ref|NP_813012.2| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides thetaiotaomicron VPI-5482] gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] Length = 849 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 110/436 (25%), Positives = 187/436 (42%), Gaps = 53/436 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 +T + + I +G + ++ + DSRS++ P+E FFA+ +G +I Sbjct: 3 YTIESIAEYIGARRVG-EHEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYISELYD 61 Query: 63 KGAGLVVVNTDMVASI---------------------GSLSIPVFG----VDDVLGALNK 97 +G VV + + LSI F V + L AL K Sbjct: 62 RGVRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLKALQK 121 Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA A R K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ Sbjct: 122 LAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLN 181 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ Sbjct: 182 EEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDC 241 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + + N D+ AKS + +S K+ + L K ++ + + Sbjct: 242 D---VVIYNGDNELISNCVAKSMLTAREIAWS---CKDIERPLYISKVTKKEDHTVIAYR 295 Query: 278 GKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGK 328 M+ + I +N L L L D + ++ P KEG+ Sbjct: 296 YLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNN 355 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 C LI++SYN++ AS+ A+ L + S +R +L D+ E G+ + + Sbjct: 356 ---C-------ILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATL 405 Query: 389 HIDLAEVLSLYNISHV 404 + +A+++ I+ + Sbjct: 406 YRRVAQLIKSRGINKL 421 >gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus maricopensis DSM 21211] gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus maricopensis DSM 21211] Length = 424 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 124/429 (28%), Positives = 190/429 (44%), Gaps = 62/429 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR P AF A+ G G+ F+ A+ GA V+ + D ++ V Sbjct: 23 LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAPRAVR--------VP 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 D AL A A R + ++ ITGSVGKTT K AL + T I + Sbjct: 75 DAQVALFAWARAERAHNP-LVVGITGSVGKTTAKAYAAAALDAHFMPVFNTMPAIACFLI 133 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 G + P+ + E+G+ LGE+R L LVRP + V+T+I AHL F +E Sbjct: 134 EFG----RSARPL-----VVEMGIDRLGEMRELVDLVRPDVGVVTSIGEAHLEAFGTVET 184 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA K I E G + ++A G T Y FG++ A L+ + Sbjct: 185 IAREKGVILEA--PRGLVG----------VQASPFYPGRDT-YGFGEATFAGDALQVSAE 231 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKE 324 + + EV + V A+ ++ L + + V TA + L+ V P Sbjct: 232 AAAFVYGEVPVALPHASKVQ-------AEAAVLGLALAEVAGVPVGTAAERLAGVSVP-- 282 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G RYR + G FT+ID++YNA+P S++AA+ L+ + GR ++VLG M E+G+ Sbjct: 283 --GGRYR--VLPGRFTVIDDAYNASPLSVRAALDALAALP----GRHVSVLGRMLELGDT 334 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H + Y ++ F V A L H T+ L + + + DG Sbjct: 335 ERELHAQ----VGAYARQRADVT-FGVGAFASELGERAHA----TVPDLLADLLAEVRDG 385 Query: 445 DVVVVKSSN 453 DVV+VK+S Sbjct: 386 DVVLVKASR 394 >gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus DSM 9946] gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus DSM 9946] Length = 430 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 113/437 (25%), Positives = 200/437 (45%), Gaps = 50/437 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR + P AF A+ G G +F A+Q GA LV+ + A G++ V Sbjct: 35 LTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVLTDQ---AHPGAVQ-----VA 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +L A R T++ + GS GKTTTKE + L A G+ NN G+ Sbjct: 87 DPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQGLG----WPAPEGNLNNAPGL 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 R+ + ELG+ LGE+ L +L PH+ V+TT+ HL +E + Sbjct: 143 AQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVLTTLGAEHLEGLGTLENVIR- 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADFQLRKWKQ 265 E+TG + S L ++ L G+KT Y + DF+ + Sbjct: 202 --------EETGLL----ASSPVRLASTQAAELVNLPGLKT-YGI---EAGDFRATDLEL 245 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + G+ + + + G G + + + ++ +D I+ L+ G Sbjct: 246 SLDST--RFRFNGQRVYLPYPGFGPLLGALAALA--VAELVGVALDPVIERLAHLQLPFG 301 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R L++G ++++YN+NP S++A + LS H GR+ VLG+M E+GE S Sbjct: 302 RMER----LHKGGLIFLNDAYNSNPLSVRAGLEFLS----HLPGRKWLVLGEMRELGEES 353 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 ++H++ A + + + V++ + + + ET++ ++++ GD Sbjct: 354 LAYHLEAARLAASVSPDVVFVGKYAPAQAAETGKVGL-----ETLEEAKAYLKTHAQAGD 408 Query: 446 VVVVKSSNSCGFYRLIN 462 +V +K+S S G +L+ Sbjct: 409 LVYLKASRSIGLEQLLE 425 >gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium HF0010_08B07] Length = 385 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 83/382 (21%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + F +KG +YD ++ ++KGA ++ +SI Sbjct: 28 IERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGASVITKQKIFGSSIV------- 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDDV +L + +++K +I ITGS GKTT K+ML L K +A + NN Sbjct: 81 -VDDVYSSLLDICANKLIKNKGKVIFITGSYGKTTIKDMLKSLLGD--KCHASKDNENNE 137 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 G+P T+ MP + ++ + E G ++G+ ++ + + ++T IA HLS F IE I Sbjct: 138 FGIPFTILSMPKNTEYLVVECGARNIGDFDLISEKLYCDVFILTAIASNHLSTFKNIENI 197 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 + K ++ E L+ D+F + + K+ + F K+K Sbjct: 198 SKTKLKLKECLKDK--------DNFVDGREIKNKNI-------FEKNK------------ 230 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 GI + TL ++SI D +K +F P GR Sbjct: 231 --------------------GI-------IQRTLTLLSI-----DKDLKEF-IFTPTAGR 257 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G + ++ +ID++YNA+P +V++ I VLGDM E+GE Sbjct: 258 GNVIKLHGSE----IIDQTYNAHPD------TVIATAMEEDSNNTILVLGDMAELGEDEN 307 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 H ++ L+ + ++L+G Sbjct: 308 KKHENVLNHLADF---QIFLTG 326 >gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 29805] gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 29805] Length = 339 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%) Query: 31 SIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 S+DSR I +FA KG DG F+ + + G + ++ + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 83 IPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VF + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEI 213 ++ IA K++I Sbjct: 212 ELQAIAFEKSKI 223 >gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp. carnosus TM300] Length = 675 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 24/324 (7%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IP V + + A+ LA+ R + I+ ITGS+GK++T+ MLT AL+ +K G+ Sbjct: 91 IPQIVVKNSIKAMKILALYIRKNYRNPIVCITGSMGKSSTRLMLTAALAPLK-VQENRGN 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 N + L + ++ + D IFE ++ L + +++P IA++T I AHLS Sbjct: 150 SNTRSAIYLHMCKLAANPDIAIFETSLNALNNRGNMASVLKPDIAIVTGIGSAHLSTIGS 209 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYD---DSFFE--LLKAKSHALGIKTIYSFGKSKNAD 257 EEIA K+ IF GL + G N D ++F + LK S G YS SK AD Sbjct: 210 TEEIAEYKSRIFAGLNEKGIAIYNADTLHNAFLKDVALKHTSKVYG----YSTENSK-AD 264 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHH---GIGYHMAQNMLMTLGIVSILTADVDTAI 314 E + + ++ K+ + H + M +N L L + L +VD + Sbjct: 265 L------YTEEITPIRKAVKVKTNDGTHFTVPSVSNGMVENALAVLLTLKHLDINVDEKL 318 Query: 315 KALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 LS K K A TL+D+++NA+ +M AI S EG +I Sbjct: 319 DNLSNTQLFKKVLEFKNIHSATENA--TLLDDTHNASLPAMINAIQAFDSQSKFFEGHKI 376 Query: 373 AVLGDMCEMGELSQSFHIDLAEVL 396 LG + ++GE + + H L +L Sbjct: 377 IALGQISDLGEQTDNVHAKLVPIL 400 >gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74] gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74] Length = 835 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 109/449 (24%), Positives = 184/449 (40%), Gaps = 43/449 (9%) Query: 36 SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG------VD 89 S+A + FFAI G H+DGH FI +KG V+ + + + VD Sbjct: 27 SLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREELATYADAQFTKVD 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L L LA R + + +I ITGS GKT KE L L+ SYN+ +GV Sbjct: 87 SSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIARSPKSYNSQLGV 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ ++ IFE G+S E++ L ++RP I + T I AH F ++ + Sbjct: 147 PLSVHQLNESHTMAIFEAGISQTQEMQALEAIIRPTIGIFTNIGTAHDQGFRTRKQKVAE 206 Query: 210 KAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +F G T + + D+ LLKA N D + W Sbjct: 207 KLRLFIHAGTLIYCTDYADIDEEVNLLLKA----------------VNPDMRFITWSLTG 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHM-----------AQNMLMTL-GIVSILTADVDTAIK 315 +++ + ++ G + + G+ +N++ L ++S+ T Sbjct: 251 QKATYQGRIAGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVTMLSLRTWSAAELQS 310 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P R ++ N LID+SYN + ++ A+ L+Q RRI +L Sbjct: 311 RLNRLRPVSMRLEQKEGINN---CELIDDSYNNDMVGLQLALRFLNQQGTR--SRRIVIL 365 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 D+ + G+ F+ + ++ + G V++ ++ T + L Sbjct: 366 SDVLQTGQPEAEFYEQVGNLMRANEVGQFIGIG-PVVSRNKLFFADGSQFFATTEEFLAQ 424 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 F S L D V+VK + F R+++ L Sbjct: 425 FSFSELRDS-TVLVKGARPFSFERIVHRL 452 >gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 836 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 2/195 (1%) Query: 27 VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + ISIDSR I +P F A+KG +DGH F+ A + GA +V+ D I + Sbjct: 25 IKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDIIL 84 Query: 86 FGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L A LA A R R++ ++AI GS GKT K++L L+ K A S+N Sbjct: 85 LRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMASPESFN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL+L ++ + + E S GE+ L ++ P ++T+I HL +E Sbjct: 145 SQIGVPLSLFKIKDSHEIALVEAAFSEPGEMEVLADIIMPEHVILTSIGAKHLHTLGSLE 204 Query: 205 EIASAKAEIFEGLEK 219 A ++ + L+K Sbjct: 205 TTALEMVKLLQPLKK 219 >gi|149278412|ref|ZP_01884549.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] gi|149230782|gb|EDM36164.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] Length = 824 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 115/455 (25%), Positives = 211/455 (46%), Gaps = 37/455 (8%) Query: 27 VNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVAS--IGSLS 82 ++ + IDSRS I P+ + F DGH++I A G V+ T+ +A G + Sbjct: 28 ISRLVIDSRSMIDPENSLFFALSAKRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDYA 87 Query: 83 IPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 F VDDVL AL +LAV R + ++AITGS GKT KE L L++ Sbjct: 88 DANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNGKTIVKEWLYQLLAADFNIVRSPR 147 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S+N+ IGVPL++ + + IFE G+S E+ L ++ P + ++T + AH FS Sbjct: 148 SFNSQIGVPLSVWDLTEEHTLAIFEAGISKGEEMDALAAIIYPTVGILTNVGEAHAEGFS 207 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 K L K +F+ Y + + + K L T +S+ +++AD Q+ Sbjct: 208 S----QKEKLLEKLKLFKEADVFI-YSPEYTQGIPKKD--LPGNTKFSWSLTESADLQIS 260 Query: 262 KWKQCSEQSWMEVQLQGKSMEV---------VHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + +++++ +G+ +E V +GI + L+++G D D+ Sbjct: 261 FIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGI---ICWATLLSMGYSP---EDADS 314 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 ++ L+ + G + +NQ ++ID+SY+A+ +S+ A+ L+ + H ++ Sbjct: 315 RLEKLN----RVGMRLELKHGINQ--CSVIDDSYSADISSLAIALDFLNLQNQH--PKKT 366 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 +L D+ E G + + ++A +L I+ + G ++ A YS T D Sbjct: 367 LILSDLYETGRKDEELYTEIAALLKQKQINRLIGVGPNISASASQFKLE-SSFYSSTQDF 425 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + F D + +++K + F R+ L+ ++ Sbjct: 426 IDQFPAIHFND-ETILLKGARRFEFERISKLITQK 459 >gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] Length = 825 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 117/461 (25%), Positives = 194/461 (42%), Gaps = 50/461 (10%) Query: 30 ISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--- 84 I DSRS+ P+E FFA+K DGH +IL +G VV T++ A+ S P Sbjct: 27 ILTDSRSLCFPEETLFFALKSGRNDGHRYILELYHRGVRNFVV-TEVPANYAS-DYPQAN 84 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L +L +LA R I+ ITGS GKT KE L LS SYN Sbjct: 85 FLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLSDDLFVTRSPRSYN 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + +GVPL++ + G+FE G+S GE+ L +++P IAV+T + AH NF E Sbjct: 145 SQVGVPLSVWLLNEHSQVGVFEAGISQPGEMLVLRDIIQPTIAVLTNLGDAHQENFVSRE 204 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 K +F + + N DDS + +Y NA F ++ Sbjct: 205 AKCKEKLVLFHDAK---IVVYNGDDSLISDCVNALEDFRGERLYWSCSDHNAPFFVKS-- 259 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 +E + ++ ++ GI + + I + A AL++ K+ Sbjct: 260 -------IEKKATATTITYIYKGIESWYSLPFIDDASITNSFAC----AAVALTLGVSKD 308 Query: 325 GRGKR--------YRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 +R R + QG TLI++SYN++ S+ A+ +++ H R + Sbjct: 309 ALDERMLQLEPIAMRLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLI 368 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 L D+ + G ++ + ++ ++ I G + + H D F Sbjct: 369 LSDIYQSGMTTEELYKEVGKLCQQRGIEKFIGVGKELQS---------HAGLITIKDKFF 419 Query: 435 LFIQSSLVDGD--------VVVVKSSNSCGFYRLINLLLEE 467 +L++ D V+++K + GF +L LL+++ Sbjct: 420 FENVENLIESDVFKQLHDEVILIKGARRFGFDQLTELLVQK 460 >gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia ubonensis Bu] Length = 292 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 26/279 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ P + F A+KG +D HDF+ +GA +V+ + L++P Sbjct: 29 VSTDSRTVGPGDLFVALKGERFDAHDFLADVAARGAAAALVSH----TPAGLAMPTIEGG 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 + AL LA R R ++A+TGS GKTT KEM+ A A G+ NN Sbjct: 85 ETRAALGALAHGWRKRFPLPVVAVTGSNGKTTVKEMIASIFAAAVGADARLATAGNLNND 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +G+PLTL R+ + ELGM+H GE L L P +A++ H + +E + Sbjct: 145 VGLPLTLLRLNAAHRLAVIELGMNHPGETEILARLTAPTVALVNNAQREHQEFMATVEAV 204 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A A + L G DD++ GI + + G ++ DF L ++ Sbjct: 205 ALEHAAVIHALAPDGVAVFPADDAY----------AGIWRVAATG-NRIVDFALDDGERH 253 Query: 267 SEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ + + S+ V +G H A+N L Sbjct: 254 TDAQVTGRVDGGALAIDTPAGSITVRLRALGAHNARNAL 292 >gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] Length = 822 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 31/389 (7%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL 81 V I DSRS+ P++ FFA++ DGH +I ++G VV+ DM + + Sbjct: 24 VRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPEDMTSCPDAN 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V L AL +LA R ++ ITGS GKT KE L LS ++ Sbjct: 84 FLQVVSP---LKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLSPERRVTRSPR 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 SYN+ IGVPL++ + + G+FE G+S GE+ L +++P I V T + AH NF+ Sbjct: 141 SYNSQIGVPLSVWNLNEKSEVGLFEAGISEPGEMEALQSVIQPTIGVFTCLGDAHQENFT 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E+ K ++F+ + + + DD+ +S G +S + ++ + Sbjct: 201 SYEQKCMEKLKLFKDAK---VLVYDMDDACVAGCVNRSAFKGEYFAWS-RQQRDVPLYIA 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 ++ ++ + +GK I N + L + L +T ++V Sbjct: 257 SVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCLHLGMSPETIAARMAVLE 316 Query: 322 P-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR-RIA 373 P KEGR C TLI++SYN++ S+ A+ +++ P GR R Sbjct: 317 PVAMRLEVKEGRSG---C-------TLINDSYNSDYNSLDIALDFMNR-RPDCAGRKRTL 365 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 VL D+ + G + + +A ++++ + Sbjct: 366 VLSDIEQAGGAPEDLYGRVARLVAMRGVE 394 >gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|315022146|gb|EFT35175.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Riemerella anatipestifer RA-YM] Length = 814 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 22/382 (5%) Query: 31 SIDSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + DSR I +P+ F AIK +G +I AV+KG L+V ++ + + V Sbjct: 28 AFDSRIIYSPKNTGFVAIKTKKNNGEKYIASAVEKGIELIVSEH---KTLDNEHLSWLIV 84 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD + L KLA I ITGS GKT KE L LS + S+N+ IG Sbjct: 85 DDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNSQIG 144 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +PL+L + + GIFE+G+S E+ L + P I V+T I AH+SNF + + Sbjct: 145 LPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLVD 204 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQL-RKWKQC 266 K +F+ E +I N D+ L+ K + L K + S+G +K+ + + WK Sbjct: 205 EKISLFKDSE---SIIFNGDNI---LVSNKINTLYSSKNLISYGFNKDNNIHISSNWK-- 256 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 Q + VQ KS N+L + ++ +L + I+ ++ E R Sbjct: 257 DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEMR 316 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N +I++S+N + S+K A I + + ++ ++ D E + + Sbjct: 317 LESVNGIKNN---LIINDSFNLDLDSLKIAFEF---IKSYQKPKKSLIITDFTEKSD-AD 369 Query: 387 SFHIDLAEVLSLYNISHVWLSG 408 + + ++A +++ N + V+L G Sbjct: 370 NLYQEVASLINEQNFNKVFLIG 391 >gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis T85] gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis T85] Length = 364 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 154/371 (41%), Gaps = 52/371 (14%) Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L+ + + A GS+NN +G P T+ R D+ I E+ H G I L + P I V+ Sbjct: 5 LAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVV 64 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AHL F E IA KAE+ + + +G + LN DD + AK L + Sbjct: 65 LNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVR 120 Query: 250 FGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVS 304 + D W E + L + V G+ G H N L + Sbjct: 121 VSRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVAL 176 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A V+ AL+ P R + T+ID++YNANP SM+A + L+ I+ Sbjct: 177 ECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIA 234 Query: 365 --PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 P R AVLG+M E+GE + + H + + ++S + + G RSI Sbjct: 235 HQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSI 285 Query: 423 H-VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCG 456 +H+ ++G + +++ L GDVV+VK+SN+ G Sbjct: 286 SAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAG 345 Query: 457 FYRLINLLLEE 467 + + L+ + Sbjct: 346 LGAVADALVAD 356 >gi|218678972|ref|ZP_03526869.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium etli CIAT 894] Length = 117 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/103 (51%), Positives = 68/103 (66%) Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 6 GRGRRIAVLGDMLEMGEYAQKVHSDLAVPLLAAGIEHVWLAGAEMAALKESLPESVHVEY 65 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 E L ++ S+V GDV +VKSS GF +++ LL++FP Sbjct: 66 RENTSELTDYVLDSVVPGDVFMVKSSLGIGFGKIVAALLDKFP 108 >gi|306820503|ref|ZP_07454136.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551417|gb|EFM39375.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 520 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 145/311 (46%), Gaps = 26/311 (8%) Query: 96 NKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 NK AR + T+I +TGS GKTT K++L L +YN +GV + Sbjct: 162 NKFINEARQKISSMQNLTVIGVTGSYGKTTVKQILGKLLGKDFNVLITPYNYNTTLGVTI 221 Query: 152 TLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 T+ P+ D + E+G +GEI+ + +V P VIT+I HL F ++ I Sbjct: 222 TIREYLSPLH-DVFVCEMGAKGVGEIKEICDIVNPKYGVITSIGEQHLETFLSVDNIIKT 280 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSE 268 K E+ + + G +FLNYD+ E+++ K K I S+ + KNADF K Sbjct: 281 KFELADAVPDDGIVFLNYDN---EIIRNKKVD---KNIVSYAVNYKNADFVPYDIKVDEN 334 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S + + G+ ++ IG H N+ + + L T ++ + E R + Sbjct: 335 GSIFYLDIDGEKVKFETKIIGLHNVLNIAGCIAVAYKLGVTRQTLVQRVRQIEQVEHRQQ 394 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE----L 384 + + F +ID++YN+NP+ K+A+ LS + +I + M E+GE L Sbjct: 395 ----VIKKNFGIIIDDAYNSNPSGAKSALDTLSMF----DMLKIVITPGMVELGEKQSSL 446 Query: 385 SQSFHIDLAEV 395 ++ F +A+V Sbjct: 447 NREFGRQIAKV 457 >gi|255536698|ref|YP_003097069.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacteriaceae bacterium 3519-10] gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 813 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 101/386 (26%), Positives = 181/386 (46%), Gaps = 23/386 (5%) Query: 27 VNGISIDSRSI-AP-QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V G++ DSR+I +P AF AI G +I A++KG VV++ + S ++ Sbjct: 24 VTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYITSAIEKGIS-VVISQHRIESETDVTWI 82 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V+D L + KLA A+ K TI ITGS GKT KE L +L T S Sbjct: 83 I--VEDSLKFIQKLAKYHFAQFTLKTTI-GITGSNGKTIVKEWLYQSLFDEFITVKSPKS 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ +G+PL+L ++ + GIFE+G+S E+ L + +P I V+T I PAH SNF Sbjct: 140 FNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMERLADIFKPQIGVLTHIGPAHESNFEN 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++ K ++F + I N D+ L + ++ K + S+G + D + Sbjct: 200 QKQLIEEKIKLFSD---SDVILFNGDNLLVHSLITERYSS--KKLISYGFETHNDIFI-- 252 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 K ++ + + G+ + N L + ++ +L D + +++ P Sbjct: 253 -KSSPKEGDLSIVYFGEEFNLPAQRRDEATLNNALCVIAVLKVLGFSTDIIREKINMLKP 311 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R + + N +I++ YN + S+K A +++ + + + VL D E G Sbjct: 312 VEMRLESVKGLRNN---LIINDYYNLDLDSLKIAFQFINE---YNKPAKTLVLTDFVE-G 364 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG 408 + + + ++ + + HV+L G Sbjct: 365 KETTLLYQTVSNLTNQQKFQHVFLIG 390 >gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] Length = 617 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 179/387 (46%), Gaps = 43/387 (11%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD- 161 RLR + I ITGS GKTTTK++ + LS Y SY + + V A ++V+ Sbjct: 29 RLRH-TSFIGITGSAGKTTTKDLCYLILSGF---YPVAQSYKS-LNVVKATADFVLEVES 83 Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIFEG 216 F I E+ + G + LV+P IAV+T I H F G ++ IA KA++ E Sbjct: 84 KHRFSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAREKAKLIEA 143 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQ 275 L + GT LN DD +++ + A K I+ GKSK A +L Q + ++ Sbjct: 144 LSENGTAVLNMDDPRVKVIGERCKA---KVIW-VGKSKGATLRLLNATSSYPQPLTLTIK 199 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +G + EV+ G ++A ++L LG+ +D AI L++ P EGR + + Sbjct: 200 YEGITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEGRMQ--PVVMG 257 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-GELSQSFHIDLAE 394 G T I + A S+ + LS+ + R+IAV+G + + G+ S + + Sbjct: 258 DG-VTFIRDDMKAPAWSLPMVLDFLSEATAV---RKIAVVGSISDFSGDRSDKYKQFARQ 313 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL--FL-------FIQSSLVDGD 445 VL ++ V+ + D R++ E L FL F+Q +L GD Sbjct: 314 VLQHADM---------VIFVGDNAHRALRARKDENDSALQGFLTLKEASSFLQKTLRPGD 364 Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +V++K SN L L+L+ + IQ Sbjct: 365 LVLLKGSNKSD--HLQRLILDRYKPIQ 389 >gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] Length = 843 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 112/474 (23%), Positives = 197/474 (41%), Gaps = 16/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58 M+ L + L+ IQ H + P + I DSR + +P ++ FFA++ DGH +I Sbjct: 9 MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 65 Query: 59 HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + G + + + + V + L AL ++A R+R +I ITGS Sbjct: 66 QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 125 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ +GVPL++ M + IFE G+S E+ Sbjct: 126 GKTVVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLR 185 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++RP + ++T I AH NF + + K ++F + YD E+ + Sbjct: 186 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 240 Query: 238 KSH-ALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + L K I +S K A + + + + VQ +S V QN Sbjct: 241 IDNLGLSDKAIGWSLTPGK-AYYHVSYSHSGDGTTIITVQHADESSTVTIPFADQASIQN 299 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L ++ +L L+ F E R Q LI+++YN + S++ Sbjct: 300 ATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRI 359 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ Q + + + +L D+ + +L + + + E+++ Y + G + + Sbjct: 360 ALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQ 419 Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 D RS + ET D L + ++VK + F R++ L ++ Sbjct: 420 DYFQRSGEGKTAFYETTDQLLADDLLGTITHAEILVKGARQFQFERIVQHLAKQ 473 >gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A] Length = 846 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83 DSRS++ P+E FFA+ G +I +G V+ + + G L + Sbjct: 30 DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89 Query: 84 -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 P V + L AL KLA R + K +I ITGS GKT KE L Sbjct: 90 HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N L L L Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410 >gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] Length = 846 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83 DSRS++ P+E FFA+ G +I +G V+ + + G L + Sbjct: 30 DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89 Query: 84 -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 P V + L AL KLA R + K +I ITGS GKT KE L Sbjct: 90 HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N L L L Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410 >gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f] gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f] Length = 846 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 169/395 (42%), Gaps = 45/395 (11%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSI----- 83 DSRS++ P+E FFA+ G +I +G V+ + + G L + Sbjct: 30 DSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQ 89 Query: 84 -----PVFG----------VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 P V + L AL KLA R + K +I ITGS GKT KE L Sbjct: 90 HDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQ 149 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I + Sbjct: 150 LLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGI 209 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AH NF ++E K +F+ + + N D+ AKS + + Sbjct: 210 LTNIGGAHQENFFSLQEKCMEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + + R K+ + + + + I +N L L L Sbjct: 267 SRTDIERPLYISRVTKK-EDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 325 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D + ++ P KEG+ C LI++SYN++ AS+ A+ L Sbjct: 326 PADQITERMARLEPIAMRLEVKEGKNN---C-------VLINDSYNSDLASLDIALDFLV 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + S +R +L D+ E G+ + + + +A+++ Sbjct: 376 RRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 410 >gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp. P1] Length = 352 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 113/258 (43%), Gaps = 32/258 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR P F A+ G DGHDF AV +GA V+ + A ++ P Sbjct: 70 VTAVEFDSRKAGPGALFLALPGERADGHDFAAGAVTRGATGVLAGRPVDAP--AVVAPPA 127 Query: 87 GVDD----------------VLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTI 128 V D VL AL +LA V L A ++ +TGS GKT+TK++L Sbjct: 128 EVRDAHTYLGSVDPDGHGAAVLAALGRLARHVLGALPGLA-VVGVTGSAGKTSTKDLLAA 186 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L+ +T A S+NN +G P T R + E G I L + P I V Sbjct: 187 VLAPQGRTVAPPESFNNELGTPWTALRADAATRHLVLEFSARGAGHIAALCAVAPPRIGV 246 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLE-------KTGTIFLNYDDSFFELLKAKSHA 241 + + AHL F IA+AK E+ E L + G LN DD +++++ A Sbjct: 247 VLNVGSAHLGEFGSRAGIAAAKGELVEALPPGDLPGGRGGVAVLNADDELVLAMRSRTPA 306 Query: 242 LGIKTIYSFGKSKNADFQ 259 + +FG+S AD + Sbjct: 307 ----RVVTFGRSACADVR 320 >gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] Length = 630 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 158/379 (41%), Gaps = 32/379 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ I ITGS GKTTTKE+ + LS S N I V T+ F I Sbjct: 37 TQTQFIGITGSAGKTTTKELCNLILSGSYSVMTTPQSLNTPIIVAETMLATEKKHKFCIM 96 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTI 223 ELG G + L RP I V+T I H F G++ IA KA++ E L K GT Sbjct: 97 ELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKAKLIEALSKNGTA 156 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSME 282 LN DD + + + A + I+ GK+ + +L K + E + V QGK E Sbjct: 157 ILNMDDPRVKAIGERCKA---RVIW-VGKNPESTIRLCKVTSRWPEPLKLTVTYQGKLYE 212 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V H G +A ++L LG+ ++ AI L P G R + + T I Sbjct: 213 VPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAG---RMQIVTGEDDVTFI 269 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + A S+ A L + R+IAV+G + + S + A L Y Sbjct: 270 RDDMKAPYWSLLAPFKFLKEADAL---RKIAVVGSISDFSGDSTMIYKRCARELREY--- 323 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFL------FIQSSLVDGDVVVVKSSN 453 V+ + D R++ E T+ G F+Q +L GD+V++K SN Sbjct: 324 -----ADMVIFVGDNAHRALRARKDENDSTLQGFLTLKEASSFLQKTLRPGDLVLLKGSN 378 Query: 454 SCGFYRLINLLLEEFPAIQ 472 L L+L+ + IQ Sbjct: 379 KSD--HLQRLILDRYKPIQ 395 >gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis C] gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis C] Length = 514 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 53/377 (14%) Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L+ + + A GS+NN +G P T+ R D+ I E+ H G I L + P Sbjct: 149 LMPAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPP 208 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I V+ + AHL F E IA KAE+ + + +G + LN DD + AK L Sbjct: 209 SIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTA 264 Query: 245 KTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLM 298 + + D W S + + L G H N L Sbjct: 265 ARVVRVSRDNTGDV----WAGPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALC 320 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A V+ AL+ P R + T+ID++YNANP SM+A + Sbjct: 321 AAAVALECGASVEQVAAALTAAPPVS--RHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQ 378 Query: 359 VLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 L+ I+ P R AVLG+M E+GE + + H + + ++S + + G Sbjct: 379 ALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG------ 432 Query: 417 ALPRSIH-VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVK 450 RSI +H+ ++G + +++ L GDVV+VK Sbjct: 433 ---RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVK 489 Query: 451 SSNSCGFYRLINLLLEE 467 +SN+ G + + L+ + Sbjct: 490 ASNAAGLGAVADALVAD 506 >gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] Length = 835 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 34/483 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58 M+ L + L+ IQ H + P + I DSR + +P ++ FFA++ DGH +I Sbjct: 1 MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + G + + + + V + L AL ++A R+R +I ITGS Sbjct: 58 QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ +GVPL++ M + IFE G+S E+ Sbjct: 118 GKTVVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEMLR 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++RP + ++T I AH NF + + K ++F + YD E+ + Sbjct: 178 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 232 Query: 238 ------KSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 A+G K Y S + D C+ + + Q +S V Sbjct: 233 IDNLGLSDKAIGWSLTPGKAYYHVSYSHSGD--------CT--TTITAQHADESSTVTIP 282 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 QN L ++ +L L+ F E R Q LI+++Y Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N + S++ A+ Q + + + +L D+ + +L + + + E+++ Y + Sbjct: 343 NNDINSLRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIG 402 Query: 407 SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + +D RS + ET D L + ++VK + F R++ L Sbjct: 403 VGRELCNYQDYFQRSGEGKTAFYETTDQLLADDLLGTISQAEILVKGARQFQFERIVQHL 462 Query: 465 LEE 467 ++ Sbjct: 463 AKQ 465 >gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482] Length = 773 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 25/326 (7%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + L AL KLA A R K +I ITGS GKT KE L LS + SYN+ I Sbjct: 36 VANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQI 95 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E Sbjct: 96 GVPLSVWQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKC 155 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +F+ + + N D+ AKS + +S K+ + L K Sbjct: 156 MEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAWS---CKDIERPLYISKVTK 209 Query: 268 EQSWMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP--- 322 ++ + + M+ + I +N L L L D + ++ P Sbjct: 210 KEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAM 269 Query: 323 ----KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 KEG+ C LI++SYN++ AS+ A+ L + S +R +L D+ Sbjct: 270 RLEVKEGKNN---C-------ILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDI 319 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHV 404 E G+ + + + +A+++ I+ + Sbjct: 320 LETGQSTATLYRRVAQLIKSRGINKL 345 >gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] Length = 368 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 17/356 (4%) Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 + +TGS GK++T + ++ K G+ N +++ + + E+G Sbjct: 11 VGVTGSAGKSSTTSFINAIFNTRWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIVLEMG- 69 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228 LG + ++P+I VIT + AH + I+E A AK+ + + G + LN D Sbjct: 70 --LGRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRNIHPRGILLLNND 127 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D+ +LL K+ + G + +++Q K S V L+GK + Sbjct: 128 DTNSKLLDYKNFK---GDLIRVGITSKSEYQATNIKYTSYGMIFGVTLRGKKVYFFIPAF 184 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + I L ++ L R + + +G LID+++NA Sbjct: 185 GMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIKLSKPKGAL-LIDDTFNA 243 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP S+KAA+ VL+++ + ++IAVLG M E+G+ S+ H ++ L+ I HV+L G Sbjct: 244 NPQSVKAAVDVLAELG--NKKKKIAVLGSMLELGDYSKKGHQEVGAYLAKKGIKHVFLYG 301 Query: 409 -----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 A+++ +P ++ ++ D L I L +G VV++K S+ R Sbjct: 302 KNASYVKTAAIENGIPEK-NILHTTNRDKLHYGILRVLNEGCVVLIKGSHKMKMSR 356 >gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 822 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 101/389 (25%), Positives = 173/389 (44%), Gaps = 31/389 (7%) Query: 27 VNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL 81 V I DSRS+ P++ FFA++ DGH +I ++G VV+ DM + + Sbjct: 24 VRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRLPEDMTSCPDAN 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V L AL +LA R ++ ITGS GKT KE L LS K Sbjct: 84 FLQVVSP---LKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQLLSPEKNVTRSPR 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 SYN+ IGVPL++ + + G+FE G+S GE+ L +++P I V T + AH NF+ Sbjct: 141 SYNSQIGVPLSVWNLDERSEVGLFEAGISEPGEMEALQSVIQPTIGVFTCLGDAHQENFT 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E+ K ++F + + + DD+ +S G +S + ++ + Sbjct: 201 SYEQKCLEKLKLF---KDAKVLVYDMDDARVVGCVNRSAFKGEYFAWS-RQRRDVPLYIA 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 ++ ++ + +GK I N + L + L +T ++V Sbjct: 257 SVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVSCLAVCLHLGMSPETIAARMAVLE 316 Query: 322 P-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR-RIA 373 P KEGR C TLI++SYN++ S+ A+ +++ P GR R Sbjct: 317 PVAMRLEVKEGRSG---C-------TLINDSYNSDYNSLDIALDFMNR-RPDCAGRKRTL 365 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 +L D+ + G + + +A ++++ + Sbjct: 366 ILSDIEQAGGAPEDLYGRVARLVAMRGVE 394 >gi|255038732|ref|YP_003089353.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Dyadobacter fermentans DSM 18053] gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053] Length = 824 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 114/461 (24%), Positives = 197/461 (42%), Gaps = 45/461 (9%) Query: 30 ISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 I DSR ++ Q FFAIKG +DGH F+ G VV + A G+L Sbjct: 18 ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVV--EEAAFTGALRETAAT 75 Query: 88 VDDV--------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 DD + AL +L + R + ++ I GS GKT KE L LS + A Sbjct: 76 WDDAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVAS 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 SYN+ IGVPL++ + + IFE G+S E+ +L +++P I + T I PAH Sbjct: 136 PKSYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGIFTNIGPAHDDG 195 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F ++ + K +F ++K L Y + E+ + S L K NA + Sbjct: 196 FRSRKQKITEKLRLFTKVKK-----LIYRKDYHEIDEEISLIL---------KPVNAFLE 241 Query: 260 LRKWKQCSEQSWMEVQL---QGKSMEVVHHGIGYHMAQNML--------MTLGIVSILTA 308 W S ++V + K++ + +G H + +T IV +L Sbjct: 242 TLSWGSNYSGSHVQVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDF 301 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPH 366 ++ A+ V K R L +G +ID++YN + + A++ L+Q Sbjct: 302 GLEPAVIQERVLLLKP---VSMRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQ--QE 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 R+ +L D+ + G+ + ++ +LS +I + G + + + Y Sbjct: 357 QRNRKTVILSDVLQTGQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFY 416 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +T L F +L D +V+VK + F ++++ + ++ Sbjct: 417 DDTDSFLKTFAFPTLAD-TLVLVKGARPFSFEKIVHRIQQK 456 >gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 302 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 35/254 (13%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + ELG S +GEI + L +PH+A+IT AH+ F G + I AK EI EGL+ GT Sbjct: 5 VIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTA 64 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQL----RKWKQC------SEQSWM 272 LN +D F + + ++ G + + +F + + AD R + C S Sbjct: 65 VLNLEDKAFPIWRKRA---GNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTA 121 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 VQL + +G H N L + ++ + L+ P +GR Sbjct: 122 RVQL---------NLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKGRAV---A 169 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + +ID++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G+ ++ H ++ Sbjct: 170 QIASNGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREV 225 Query: 393 -----AEVLSLYNI 401 +V +LY + Sbjct: 226 GAYAAGKVSALYAV 239 >gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991] gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991] Length = 525 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 163/349 (46%), Gaps = 19/349 (5%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168 II ITGS GKT+ K +L ++ T SYNN +G+ LT+ + + + + E+G Sbjct: 183 IIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIRKQLQSLHEVFLCEMG 242 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+ EI L V+P +++T I P HLS F +E I K + E L K G FLN D Sbjct: 243 ADHVHEISALMAFVKPSWSIVTAIGPQHLSTFQTMEHIVHEKMQAIECLPKDGIGFLNID 302 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 +++ ++ I ++G AD++++ + + ++ ++G + Sbjct: 303 NAWIREYPIQNTC----RIVTYGTHAAADYRIKDIVYSKQGASFKIHVKGVDYAFHTKLL 358 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N+ + + L ++ + ++ L+ P + R + +T++D++YN+ Sbjct: 359 GKHNVVNIAAGIAVAHCLGIEL-SVLQELTKHLPYVEHRLQLRPTSS---YTMLDDAYNS 414 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 N A+ VL+++ EG+ I V ++G++ ++ H+ L + L+ V L G Sbjct: 415 NVEGATYALEVLAKM----EGKHIVVTPGFLDLGDMEENAHVRLGKQLTQVA-DEVILVG 469 Query: 409 FH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 H V L+ A S HV+ E + F ++ VV+ ++ Sbjct: 470 QHQSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQLATKDSVVLFEND 518 >gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum V10Sc8a] Length = 511 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166 T++ +TGS GKT+TK L L + SYN +GV + + R ++ IF E Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225 +G ++GEI+ + +V+P +IT+I P HL F I+ I K E+ + L +K G IFL Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 NYD+ + AK K YS G D+ + V + + Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFTT 341 Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341 IG H QN++ + + + L AD+ +K L +R + +G T+ Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395 ID+++N+NP KAA+ L+ EG +I V M E+G EL++ F AE+ Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----EGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447 >gi|323575264|emb|CBY88822.1| hypothetical protein [Staphylococcus aureus] Length = 348 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 18/280 (6%) Query: 52 DGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 +G+++I ++ GL++ T DM P ++D L KLA RL+ K Sbjct: 63 EGNEYI-KKDKEDLGLIITETYVPDM-----KFKTPQLVINDSANTLTKLAEEMRLQYKH 116 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFE 166 ++AITGS+GK++T+ +++ L K Y +NN+I V L L +M +F + E Sbjct: 117 PVVAITGSMGKSSTRMLISAGL---KDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLE 173 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + ++ L + ++L++P+IA++T I AH+S F I I KA IF+GL G +N Sbjct: 174 VSLNALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIIN 233 Query: 227 YDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D ++L +AK + + T + S A + + + + + G+ Sbjct: 234 KDTLHSDILIERAKQNTSNVITYSTHDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYR 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + I M +N L T +S L ++ A++ LS F P E Sbjct: 292 INSISDGMVENSLATFATLSHLDIPLERALENLSTFKPFE 331 >gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] Length = 835 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 34/483 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEA-FFAIKGPHYDGHDFIL 58 M+ L + L+ IQ H + P + I DSR + +P ++ FFA++ DGH +I Sbjct: 1 MSTLQNILEYLRPIQTHLVDERP---IRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + G + + + + V + L AL ++A R+R +I ITGS Sbjct: 58 QLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ +GVPL++ M + IFE G+S E+ Sbjct: 118 GKTVVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLR 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++RP + ++T I AH NF + + K ++F + YD E+ + Sbjct: 178 LQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADH-----FVYDADSDEIQRG 232 Query: 238 ------KSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 A+G K Y S + D C+ + + Q +S V Sbjct: 233 IDNLGLSDKAIGWSLTPGKAYYHVSYSHSGD--------CT--TTITAQHADESSTVTIP 282 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 QN L ++ +L L+ F E R Q LI+++Y Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N + S++ A+ Q + + + +L D+ + +L + + + E+++ Y + Sbjct: 343 NNDINSLRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIG 402 Query: 407 SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + +D RS + ET D L + ++VK + F R++ L Sbjct: 403 VGRELCNYQDYFQRSGEGKTAFYETTDQLLADDLLGTISQAEILVKGARQFQFERIVQHL 462 Query: 465 LEE 467 ++ Sbjct: 463 AKQ 465 >gi|6332754|dbj|BAA86636.1| hypothetical protein [Staphylococcus aureus] Length = 350 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 18/280 (6%) Query: 52 DGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 +G+++I ++ GL++ T DM P ++D L KLA RL+ K Sbjct: 63 EGNEYI-KKDKEDLGLIITETYVPDM-----KFKTPQLVINDSANTLTKLAEEMRLQYKH 116 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFE 166 ++AITGS+GK++T+ +++ L K Y +NN+I V L L +M +F + E Sbjct: 117 PVVAITGSMGKSSTRMLISAGL---KDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLE 173 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + ++ L + ++L++P+IA++T I AH+S F I I KA IF+GL G +N Sbjct: 174 VSLNALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIIN 233 Query: 227 YDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D ++L +AK + + T + S A + + + + + G+ Sbjct: 234 KDTLHSDILIERAKQNTSNVITYSTHDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYR 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + I M +N L T +S L ++ A++ LS F P E Sbjct: 292 INSISDGMVENSLATFATLSHLDIPLERALENLSTFKPFE 331 >gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565] gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565] Length = 852 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 112/494 (22%), Positives = 202/494 (40%), Gaps = 60/494 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQ 62 + + Q+I +G + ++ + DSRS++ P+E FFA+ G +I Sbjct: 3 YAIESIAQSIGARRVGEY-EVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYD 61 Query: 63 KGAGLVVVNTDMVASI--GSLSI----------PVFG----------------VDDVLGA 94 +G V++ + + G L I P+ V + L A Sbjct: 62 RGVRNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKA 121 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L KLA R R +I ITGS GKT KE L LS + SYN+ IGVPL++ Sbjct: 122 LQKLAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVW 181 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F Sbjct: 182 QLSEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQEKCMEKLTLF 241 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + + D+ AKS + +S D + + C + Sbjct: 242 KDCD---VVIYDGDNELISNCVAKSMLTAREIAWS-----RTDIERPLYISCVTKKEDHT 293 Query: 275 QLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-------K 323 + + + + + I +N+L L L D + ++ P K Sbjct: 294 VIAYRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVK 353 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 EG+ C LI++SYN++ AS+ A+ L + S +R +L D+ E G+ Sbjct: 354 EGKNN---C-------LLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQ 403 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + + + +A+++ I + G + + I ++ + L + Sbjct: 404 STATLYRRVAQLVQSRGIDKLIGVGPEISSCAARFDDGIERYFFPNTEALLKSELLKSLH 463 Query: 444 GDVVVVKSSNSCGF 457 +V+++K S F Sbjct: 464 SEVILIKGSRVFNF 477 >gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Oceanithermus profundus DSM 14977] gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oceanithermus profundus DSM 14977] Length = 417 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 159/365 (43%), Gaps = 42/365 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR++ P AF A+ G G + A+ +GA LV+ + VDD Sbjct: 24 DSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVIGPQARDRGLQ--------VDDPY 75 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 AL +L R + ++GSVGKT+TKE L AL A G+ N + Sbjct: 76 RALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALARALD----WPATEGNLNTPPALTRF 131 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + + ELG+ GE+ L L P + V+T IAP HL +E +A K + Sbjct: 132 FWHLSPDAEGAVVELGIDRPGEMDELLELTAPDLGVLTAIAPVHLEGLGSLEAVAREKLK 191 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQ 269 + + L + D L+ G +T Y F + N +L C+E Sbjct: 192 LL----AASPLRLAHVD-----LRHWGLPEGTRT-YGFDPAANFAGEALEL----GCAE- 236 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G+++ + G G +A + +L DV A + L P GR + Sbjct: 237 --TRFRYAGRTLRLGVLGRGAALAALAALA--AAELLGRDVRVAAERLEALKPAPGRLE- 291 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L G +++SYNA+P +++AA+ VL++ G R VLG M E+G ++ +H Sbjct: 292 ---PLRAGGTLWLNDSYNASPKAVEAALEVLARCP----GPRGVVLGTMRELGPEAERWH 344 Query: 390 IDLAE 394 ++ AE Sbjct: 345 LEAAE 349 >gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] Length = 792 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 161/382 (42%), Gaps = 48/382 (12%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFG 87 DSRS+ P+E FFA+K DGH +I +G VV + V P Sbjct: 4 DSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVV--EQVPEAYETLYPQANFLR 61 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V L AL +LA R I+ ITGS GKT KE L L ++ SYN+ I Sbjct: 62 VPHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIVRSPRSYNSQI 121 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ + + GIFE G+S GE+ L +++P I V+T++ AH NF +EE Sbjct: 122 GVPLSVWLLNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSLGAAHQENFRSMEEKC 181 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+ E ++ + +D ++ ++ G K W C Sbjct: 182 MEKLELMHDTE--AMVYCSDNDIVSRCIRRMNYK-GEKI---------------SWSTCD 223 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-------- 319 +Q+ V KS+E H + +N I I A ++ I +V Sbjct: 224 QQAAFYV----KSVENSHITYIWKEEEN---CFDIPFIDEASIEDCITCAAVALRLGLTP 276 Query: 320 -----FHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 PK E R Q LI++SYN++ S+ A+ +++ +R Sbjct: 277 GDLADRMPKLEPVAMRLEVKEGQRGCILINDSYNSDINSLDIALDFMNRREEL--KKRTL 334 Query: 374 VLGDMCEMGELSQSFHIDLAEV 395 +L DM + G + + ++E+ Sbjct: 335 ILSDMFQSGLSPEKLYAQVSEL 356 >gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 495 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R + P F A+ G +DGHD++ A +KGA +V+ + A S P+ V Sbjct: 35 GVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEA-----SGPLLIV 89 Query: 89 DDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYN 144 D AL LA V R ++ +TG+ GKTTT+E+L + LS ++ + ++N Sbjct: 90 GDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREGRRPHTNRQNWN 149 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP TL + E+G+ G++ +L+ ++ ++++T++ HL IE Sbjct: 150 NEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEYLSSVLVSDVSIVTSVGEGHLETLGSIE 209 Query: 205 EIASAKAEIFEGLEKTGTIFLNYD 228 + K+ + + G I L D Sbjct: 210 GVWKEKSNLLNWVRPGGGIVLPLD 233 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%) Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-------SPHG 367 K L F P GR + R +G L+D YN+NP S++ A +++ + G Sbjct: 334 KHLEKFAPLPGRMQEKRTP--EGALLLLDH-YNSNPLSLQGAFQWCTEVWKKEASLAGGG 390 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---------- 417 G+ +AVLGDM E+GE S H + + S ++ G ++ Sbjct: 391 PGKLLAVLGDMLELGEDSSRLHRKAGLIAAETPFSAIFYKGDFFQDFREGYLSGKGEAAR 450 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 L R YS G+F +L GDVV+VK S Sbjct: 451 LTRLSGPPYS--GQGVF----PALRRGDVVLVKGSR 480 >gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912] gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912] Length = 529 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 29/379 (7%) Query: 96 NKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 N+ AAR R I+ ITGS GKT+TK +L L+ SYN +GV Sbjct: 165 NRFLRAAREKLAQRPDLIIVGITGSYGKTSTKFILGTLLTQKFNVLVTPDSYNTPMGVCR 224 Query: 152 TL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + R+ + + + E+G G+IR L LV P I V+T + P HL F +E +A K Sbjct: 225 VVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHLETFGSVEAVARTK 284 Query: 211 AEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 E+ + L G +NYD+ + EL K H + +G + SE+ Sbjct: 285 YELIKSLPPDGLAVMNYDNPYCRELAKETRHV----QVEGYGLESPGARLVVSDVHVSEK 340 Query: 270 SWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 V + G+S +G H N+L + + L + + P R Sbjct: 341 GTTFVLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAGIGQLQPVPHR 400 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + R G +ID+++N+NP + A+ VLS S GR++ V M E+G + Sbjct: 401 LQLIR----SGGVYVIDDAFNSNPTGTEVALEVLSGFS----GRKVVVTPGMVELGGEEE 452 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSS 440 ++ + + ++ HV L G L LPR V +++ +Q Sbjct: 453 RYNREFGQRMAQV-CDHVILVGPERTKPIAAGLLDGGLPRD-RVSVVTSLEEATAVLQQL 510 Query: 441 LVDGDVVVVKSSNSCGFYR 459 L GD V+ ++ + R Sbjct: 511 LRPGDAVLFENDLPDNYSR 529 >gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium moorei F0204] gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium moorei F0204] Length = 523 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 136/285 (47%), Gaps = 30/285 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168 I ITGS GKT+TK ++ + T SYN +G+ +T+ + P+ F + E+G Sbjct: 181 IGITGSYGKTSTKNVMQAMIGEQFNTLMTPASYNTPMGITITIRTLLKPIHKVF-VCEMG 239 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+GEI L V+P I V+T+I P HL+ F E I K ++ E L K G LNYD Sbjct: 240 ADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMMELLPKDGLGVLNYD 299 Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + F + K+ +KT+ S+G KS++ D+ + ++ + G S VVH Sbjct: 300 NDFIRNYRLKNL---VKTV-SYGVKSRDVDY------YADDITYTRM---GSSFTVVHRD 346 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQ-GFFT 340 + +L L I++IL+A + L+V P R + +R L + Sbjct: 347 EHVRIETKLLGELNILNILSA--ICVARHLNVPWPTIQRAAKTMKQVEHRLELKTINGYR 404 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ID+++N+NP A+ VLS + R V M ++G + Sbjct: 405 FIDDAFNSNPVGSAMALEVLSMMP----NTRYVVTPGMIDLGAIQ 445 >gi|188995058|ref|YP_001929310.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis ATCC 33277] gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277] Length = 823 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 183/402 (45%), Gaps = 16/402 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAV 61 ++ F +L + + ++ IV + + DSR+++ FFA++ DGH +I Sbjct: 1 MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60 Query: 62 QKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 KG V++ D++ + + V L AL ++A R +I ITGS G Sbjct: 61 DKGVRSFVISDPSKDLMEKMPQANW--MRVAHPLDALQRIAALRRSMFDIPVIGITGSNG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L L + SYN+ IGVPL++ +M + GIFE G+S +GE+ L Sbjct: 119 KTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P +IT I AH NF I+ K +F TI N D E+ A Sbjct: 179 ESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---PHCHTIVYNGDCE--EIAAAI 233 Query: 239 SHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S + S+ ++K A + + + ++ ++ + GK +V ++++ Sbjct: 234 SFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDII 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + ++S+L +V +A K + P E R + A + G T+I++ Y+ + S+ A+ Sbjct: 294 HCITLISVLCPEVLSARKRFASLEPVEMRMEVK--AGDHG-NTIINDVYSNDVYSLTLAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + + +++ +L D+ + G + + +A L +Y Sbjct: 351 DFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVY 392 >gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 510 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 24/287 (8%) Query: 103 RLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 RL++++ +I ITGS GKT+ K + L + SYN +G+ + +D Sbjct: 154 RLKAESGLKVIGITGSFGKTSVKFFTSTMLDEKFRVQNTPSSYNTPMGLSKVINN-ELDS 212 Query: 161 DFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 IF ELG GEI + LV+P I VIT I P H+ + IE I K E+ E L+ Sbjct: 213 SREIFLAELGAYKPGEIHEVASLVQPDIGVITAIGPTHMQMYKTIENIMKTKYELIEDLD 272 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQL 276 + GT NYD+ + L K+ I+ Y D+ + + SE+ ++ V Sbjct: 273 ENGTAIFNYDNKYVRELADKTTKKTIR--YGTKDFMKLDYYAKDI-EVSERGSTFTLVSK 329 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKAL-SVFHPKEGRGKRYRC 332 + S+E +G H QN+L ++ I + + +V I+ + SV H R Sbjct: 330 EKGSIECTTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEKIESVEH-------RLNL 382 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 QG +ID+++N+NP +AA+ VLSQ +G++I V M Sbjct: 383 IEGQGGVIVIDDAFNSNPVGFRAALKVLSQFK---DGKKIIVTPGMV 426 >gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702] gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702] Length = 511 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166 T++ +TGS GKT+TK L L + SYN +GV + + R ++ IF E Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225 +G ++GEI+ + +V+P +IT+I P HL F I+ I K E+ + L +K G IFL Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 NYD+ + AK K YS G D+ + V + + Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFAT 341 Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341 IG H QN++ + + + L AD+ +K L +R + +G T+ Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395 ID+++N+NP KAA+ L+ +G +I V M E+G EL++ F AE+ Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447 >gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] Length = 821 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 21/316 (6%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + L AL KLA R + K +I ITGS GKT KE L LS + SYN+ I Sbjct: 84 VPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQI 143 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL++ ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E Sbjct: 144 GVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKC 203 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +F+ + + N D+ AKS + +S + + R K+ Sbjct: 204 MEKLTLFKDCD---VVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKK-E 259 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP----- 322 + + + + I +N L L L D + ++ P Sbjct: 260 DHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRL 319 Query: 323 --KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 KEG+ C LI++SYN++ AS+ A+ L + S +R +L D+ E Sbjct: 320 EVKEGKNN---C-------VLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILE 369 Query: 381 MGELSQSFHIDLAEVL 396 G+ + + + +A+++ Sbjct: 370 TGQSTATLYRRVAQLV 385 >gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] Length = 825 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 149/354 (42%), Gaps = 11/354 (3%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88 DSRS+ P+E FFA+K DGH +I ++G VV T++ A + V Sbjct: 30 DSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVV-TEVPADYATEYAEANFLKV 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L AL +LA R I+ ITGS GKT KE L L SYN+ +G Sbjct: 89 VDSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFITRSPRSYNSQVG 148 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ + GIFE G+S GE+ L +++P IAV+T + AH NF E Sbjct: 149 VPLSVWLLNEHTQVGIFEAGISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCK 208 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K +F + T+ N DD + + ++ K K A F ++ ++ Sbjct: 209 EKLILFHDAK---TVVYNGDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKET 265 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +G I N + L VD + + P Sbjct: 266 ATTVTYIYKGNESWYSLPFIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPI---AM 322 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R Q TLI++SYN++ S+ A+ +++ H R +L D+ + G Sbjct: 323 RLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLILSDIYQSG 376 >gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum 70/3] Length = 511 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 30/298 (10%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--E 166 T++ +TGS GKT+TK L L + SYN +GV + + R ++ IF E Sbjct: 169 TVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGV-VKVVRGQLNATHEIFLCE 227 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225 +G ++GEI+ + +V+P +IT+I P HL F I+ I K E+ + L +K G IFL Sbjct: 228 MGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGIIFL 287 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 NYD+ + AK K YS G D+ + V + + Sbjct: 288 NYDNEYI----AKHECNKNKVTYSLGGG--TDYYADNISVSENGTQFTVHNGNEEKQFAT 341 Query: 286 HGIGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TL 341 IG H QN++ + + + L AD+ +K L +R + +G T+ Sbjct: 342 KLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECV--------PHRLQIIKGTNKTI 393 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEV 395 ID+++N+NP KAA+ L+ +G +I V M E+G EL++ F AE+ Sbjct: 394 IDDAFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI 447 >gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum rubarum] Length = 495 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R + P F A++G +DGHD++ A +KGA +V+ + A + P+ V Sbjct: 35 GVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEA-----TGPLLIV 89 Query: 89 DDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYN 144 D AL LA V R ++ +TG+ GKTTT+E+L + LS+ ++ + ++N Sbjct: 90 GDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEGRRPHTNRQNWN 149 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP TL + E+G+ G++ +L+ ++ +++T++ HL +E Sbjct: 150 NEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDYLSSVLVSDASIVTSVGEGHLETLGSVE 209 Query: 205 EIASAKAEIFEGLEKTGTIFLNYD 228 + K+ + + G I L D Sbjct: 210 GVWKEKSHLLNWVRPGGAIVLPLD 233 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%) Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP------HGE-G 369 L F P GR + R +G L+D YN+NP S++ A +++ GE G Sbjct: 336 LENFSPLPGRMQEKRTP--EGALLLLDH-YNSNPLSLRGAFQWCAEVWKKEATLSRGEPG 392 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +AVLGDM E+GE S H + + + S ++ G Sbjct: 393 KLLAVLGDMLELGEDSPRLHREAGRIAAETPFSAIFYKG 431 >gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 473 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 117/455 (25%), Positives = 197/455 (43%), Gaps = 29/455 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKG-PHYDGHDFILHAVQKGA-GLVVVNTDMVASIGS 80 PQ + GI +++ P + +F +KG P D + IL A+ KGA LV+ + Sbjct: 21 PQQKITGIMSRCKAVKPGQVYFDVKGGPGSD--ENILVALDKGAVALVISKHKKKLPFNN 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I V V V A R + ++ +TG+ GKTTTKEM+ S KK + I Sbjct: 79 HKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTSGKTTTKEMIA---SIFKKKWGKI 135 Query: 141 GSYNNHIG----VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 ++ VP + R+ + +FE+GM+ G + + +++P I +IT I AH Sbjct: 136 LKTEQNLNLPSFVPGHIMRLTAEHKAAVFEIGMNRRGHVAKQSRVIKPMIGIITNIGQAH 195 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + E + K I EG+ K G + +N DD L S KT+ FG A Sbjct: 196 VGMLGSKEAVIEEKGSIIEGIPKNGYLLINADDENSGKLDLSS--FQGKTL-RFGIKNKA 252 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 D+ + + + GK ++ G H N L + ++L +V + Sbjct: 253 DYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNALAAIAASTLLNIEVKYIKQG 312 Query: 317 LSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 L+ F R + R L +G LI+++YNANP S+ A + VL +++ + IAV Sbjct: 313 LAGF-----RRPKLRLQLVKGINDSLLINDTYNANPDSVIAGLEVLKELAK--DRTSIAV 365 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHYSET 429 LG+M E G + H + + I ++ G V A K +P + + Sbjct: 366 LGNMLEQGVFTNEAHQRVGRRVQELGIDYLITIGKLARQIAVGARKHGMPEEKIKSFDQR 425 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +G F +++ + V + K S + +++ L Sbjct: 426 YEGSF-YLKKHMPHRAVCLFKGSRAVYLDKMVEYL 459 >gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] Length = 545 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 7/196 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83 + IDSR + F A G H +G+D+ L A++ GA + + D A + Sbjct: 34 VVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDASQDLICAAEQNGCVL 93 Query: 84 PVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 DD L +LA R ++ ++ ITGS GKTTTK++ AL++ + +A G+ Sbjct: 94 LRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQGN 153 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLT+ + + E+GM+H GE+ L+ + P + VIT I +H+ Sbjct: 154 FNNLIGVPLTILSASAQDEVIVCEMGMNHPGELATLSRVALPCLCVITNIGTSHIGILGS 213 Query: 203 IEEIASAKAEIFEGLE 218 E IA+AK EI + Sbjct: 214 REAIATAKLEIITAIR 229 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 295 NMLMTLGIVSILTADVDTAIKAL---SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + L L I L D AI+A+ S H + R ++ F +ID+SYNA+PA Sbjct: 374 DALFALAIADELACDRSAAIRAIEACSCVHMRLEEISRP----HKPF--IIDDSYNASPA 427 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFH 410 S+ A++VL + G R IA+LG++ E+G S H + + + V++ G Sbjct: 428 SIAQALAVLHHCT--GYTRHIAILGEVGELGNQSARLHDYIGAYAAASGVDMLVFVGGED 485 Query: 411 VLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + +A R++ +HY + L I L + D V+VK+S +C Sbjct: 486 AKRMVEA-ARTMGYPAEQLHYVRDVHEAQLRIAPLLRETDAVLVKASRAC 534 >gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] Length = 744 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 165/374 (44%), Gaps = 25/374 (6%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 + ++ IIAITGS GKTTTK + LS + +N + Sbjct: 379 SVEVKKNLPIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSH 438 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 + E GM++ G I +++P+I+++T I AH+ NF G + +A AK+E+ G+++ Sbjct: 439 QAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQ 498 Query: 220 TGTIFLNYDDS---FFEL--LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 G + LN DD F E K K +GIK+ +AD++ + ++ Sbjct: 499 QGLLILNKDDDNSRFLETQQFKGKMLTVGIKS--------DADYRAYDLQYKDIGMSFKM 550 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +L G+ +E+ +G H N L + + L L+ P +R Sbjct: 551 KLHGQEIELYIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYN 606 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + T+ID++ +++P ++AAI VL+ I+ + R++A++G M E+G L + + + E Sbjct: 607 LRDDITVIDDTVHSHPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGE 663 Query: 395 VLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + I GF + +A VH+ D L + + D ++VK Sbjct: 664 YIYEEGIDEFITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVK 723 Query: 451 SSNSCGFYRLINLL 464 ++ + + L Sbjct: 724 GASKTNMFETVKYL 737 >gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] Length = 857 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 28/447 (6%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIPVFGV 88 DSRS+ P+E FFA+K DGH +I ++G VV T++ A + V Sbjct: 62 DSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVV-TEVPADYATEYAEANFLKV 120 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L AL +LA R I+ ITGS GKT KE L L SYN+ +G Sbjct: 121 VNSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFITRSPRSYNSQVG 180 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ + GIFE G+S GE+ L +++P IAV+T + AH NF E Sbjct: 181 VPLSVWLLNEHTQVGIFEAGISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCK 240 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K +F + T+ N DD + + ++ K K A F ++ ++ Sbjct: 241 EKLILFHDAK---TVVYNGDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKET 297 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +G I N + L VD + + P Sbjct: 298 ATTVTYIYKGNESWYSLPFIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPI---AM 354 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R Q TLI++SYN++ S+ A+ +++ H R +L D+ + G + Sbjct: 355 RLEVKQGQHGCTLINDSYNSDINSLDIALDFMNRRPDHQGRRHTLILSDIYQSGMTTDEL 414 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--- 445 + ++ + + G + + H H F L+D D Sbjct: 415 YQEVGMLCQQRGVEKFIGVGKDLQS---------HAHCIGVKAKYFFESVEELIDSDVFK 465 Query: 446 -----VVVVKSSNSCGFYRLINLLLEE 467 V+++K + GF +L LL+++ Sbjct: 466 QLHDEVILIKGARRFGFDQLTELLVQK 492 >gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 269 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 7/232 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---- 78 P+ G++ DSR P + + A+ G DGHDF+ A+ GA +V + ++ Sbjct: 23 PRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLA 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L V V D A+ +A R +IA+TGS GKTTTK ++ L+S T A Sbjct: 83 AELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ NN +GVP TL D + E+GM G++ L VRP ++ + +H+ Sbjct: 143 TAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVVNVGESHIE 202 Query: 199 NFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLK--AKSHALGIKTI 247 E IA AKAE+ L E TG F+N DD + + ++ A+ A ++T+ Sbjct: 203 LLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254 >gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 365 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 19/362 (5%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GKTTTK + LS + +N + + E GM Sbjct: 9 IIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVVLEYGM 68 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 ++ G I +++P+I+++T I AH+ NF G + +A AK+E+ G+++ G + LN D Sbjct: 69 AYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLLILNKD 128 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L+ + + T+ G +AD++ + +++L G+ +E+ + Sbjct: 129 DDNSRYLETQQFKGKMLTV---GIKSDADYRAYDLQYKDIGMSFKMKLHGQEIELYIPIL 185 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + + L L+ P +R + T+ID++ ++ Sbjct: 186 GEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPP----RRLTIYNLRDDITVIDDTVHS 241 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +P ++AAI VL+ I+ + R++A++G M E+G L + + + E + I G Sbjct: 242 HPQGVRAAIDVLTNIA---KKRKVAIIGQMRELGVLREEEYRKVGEYIYKVGIDEFITYG 298 Query: 409 FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 F + +A P +H H+ D L + + D ++VK ++ + + Sbjct: 299 FRTDEMSNAAIEMGMDPSKVH-HFI-NKDALHALLDKLIQPHDTILVKGASKTNMFETVK 356 Query: 463 LL 464 L Sbjct: 357 YL 358 >gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] Length = 813 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 28/354 (7%) Query: 33 DSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR IA ++ FFA G DGH +I A KG ++ D + + V + Sbjct: 31 DSRKIAHEKLGIFFAFTGRQ-DGHLYIQDAYNKGVRNFILEKDTEQEVQMPDANILWVAN 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L LA R R + +I ITGS GKT KE L +S K Y SYN+ +GV Sbjct: 90 SWTTLQSLAQHNRSRFQGPVIGITGSNGKTIVKEWLFQLMSPEYKIYRSPKSYNSQLGVA 149 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L+L + + I E G+SH+GE+ L +++P V+T I AH F+ E K Sbjct: 150 LSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTFGVLTNIGIAHQQGFASKLEKTEEK 209 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-Q 269 +F+ E L Y + E ++ + S+G+ ++ ++ ++ + Q Sbjct: 210 LRLFKDAET-----LIYPAKYLEAVQIPYKPRKL----SWGEEEDNQLEVYSIRKPEDGQ 260 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADVDTAIKALSVFH--PKE 324 +++ + GK+ GI + M I + L DTA+ A + + P E Sbjct: 261 TYVTLYYGGKTF-----GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVE 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + N ++ID+SY+ + S++ A+ L+Q H I +L D+ Sbjct: 316 MRLELKNGKNNT---SVIDDSYSNDLVSLQIALDFLNQ--QHQHTNSILILSDI 364 >gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 194 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 9/196 (4%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + G Sbjct: 4 SLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D P VDD L AL +L + ++A+TGS GKTTTK+ Sbjct: 63 AKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKD 121 Query: 125 MLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 M+ L++ + KTYA ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 122 MVASILATQMNVIKTYA---NFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRL 178 Query: 182 VRPHIAVITTIAPAHL 197 P IAV+T I AH+ Sbjct: 179 TTPDIAVVTMIGEAHI 194 >gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter heparinus DSM 2366] gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366] Length = 817 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 182/387 (47%), Gaps = 16/387 (4%) Query: 27 VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ + IDSRS+ + FFA+KG DGH F+ A G V++ + Sbjct: 28 ISKLVIDSRSVIDPDGSLFFALKG-QRDGHGFLKDAYANGIRNFVISEAKYTRLFP-DAN 85 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V DVL AL+ +A R + ++ ITGS GKT KE L L++ S+N Sbjct: 86 ILLVQDVLLALHTIAKYNRNQYDLKVLGITGSNGKTIVKEWLYQLLAADHNIVRSPKSFN 145 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ + GIFE G+S E+ L +++P++ ++T + AH F ++ Sbjct: 146 SQIGVPLSVWEITAIHTLGIFEAGISKTDEMDALASMIKPNVGILTNVGEAHAEGFVSLK 205 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 E K ++F + +F+ Y + L L KT +S+ K + AD Q+ + Sbjct: 206 EKLLEKLKLFNDAD----LFI-YAPEYTAGLSTDD--LPGKTKFSWSKKQQADLQILFVE 258 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++++ +G +E + +N ++ + L + A K L Sbjct: 259 PIDGKNYIRADFKGIEIECLIPFSDQASVENGIICWATLLALGYTPEEADKRLEKLTRVS 318 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + +NQ ++ID+SY+A+ +S+ A+ L+ + H ++ +L D+ E G+ Sbjct: 319 MR-LELKNGINQ--CSVIDDSYSADISSLAIALDFLNLQNQH--PKKTLILSDIYETGKT 373 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++ + ++A +L ++ + G H+ Sbjct: 374 NRVLYTEIAALLKQKHVDRLIGIGTHI 400 >gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 508 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 153/359 (42%), Gaps = 20/359 (5%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161 R R I ITGS GKT+TK +T LS SYN +GV + D Sbjct: 152 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 211 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+G G+I+ L L P I VIT+I P HL F IE +A K E+ EGL + G Sbjct: 212 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 271 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSEQ--SWMEVQL 276 LN D+ + K ++ ++ +G + + W + + Q + V Sbjct: 272 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 327 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G ++ +G H N+L + + L + + + LS P R + Sbjct: 328 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP---HRLQLISTP 384 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSFHIDL 392 T+ID+++N+NP K A++ L ++ RRI V M E+GE +++ ++ Sbjct: 385 HGVTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGEKEYEENKNLGKNI 441 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 AEV + S LK+A V +D +Q+ L GDVV+ ++ Sbjct: 442 AEVCDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVLFEN 500 >gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 535 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 16/287 (5%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161 R R I ITGS GKT+TK +T LS SYN +GV + D Sbjct: 179 RNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKDTHQ 238 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+G G+I+ L L P I VIT+I P HL F IE +A K E+ EGL + G Sbjct: 239 IFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLPEDG 298 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ---CSEQ--SWMEVQL 276 LN D+ + K ++ ++ +G + + W + + Q + V Sbjct: 299 IAVLNGDNYYCRTFGEK---FAVRKLF-YGTESPIERKYFLWAENIINTRQGLKFDAVTE 354 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G ++ +G H N+L + + L + + + LS P R + + Sbjct: 355 DGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRLQ--LISTPH 412 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G T+ID+++N+NP K A++ L ++ RRI V M E+GE Sbjct: 413 G-VTVIDDAFNSNPEGAKEALACLKEMDAK---RRIIVTPGMVELGE 455 >gi|251811443|ref|ZP_04825916.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|251805033|gb|EES57690.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] Length = 552 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 27/297 (9%) Query: 133 IKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +K Y +NN+I V L L +M +F + E+ ++ L + ++L++P+IA++T Sbjct: 7 LKDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSLNALNAVGNSSYLIKPNIAIVT 66 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIY 248 I AH+S F I I KA IF+GL G +N D ++L +AK + + T Sbjct: 67 GIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDTLHSDILIERAKQNTSNVITYS 126 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + S A + + + + + G+ + I M +N L T +S L Sbjct: 127 THDSS--ATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENSLATFATLSHLDI 184 Query: 309 DVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ A++ LS F P KE Y+ LID+++NA+ +M AI + Sbjct: 185 PLERALENLSTFKPFEKVLNLKEVETPNYKV-------NLIDDTHNASLPAMINAIKAFN 237 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + +G +I +G + ++G+ S+S H+ L +VL N ++L + DAL Sbjct: 238 TQTKFFKGNKIIAIGQISDLGKHSKSLHLQLVDVLENSNAD-------YILCMDDAL 287 >gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] Length = 824 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 112/458 (24%), Positives = 193/458 (42%), Gaps = 57/458 (12%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----- 85 DSRS+ P+E FFA+K DGH +I ++G VV+ S+PV Sbjct: 30 DSRSLCFPEETLFFALKTDRNDGHHYISELYRRGVRNFVVS----------SVPVDYEHL 79 Query: 86 ------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V + AL +LA R I+ ITGS GKT KE L LS Sbjct: 80 YPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKTMVKEWLYQLLSPQFFVTRS 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 SYN+ +GV L++ + + GIFE G+S GE+ L H+++P IAV+T I AH N Sbjct: 140 PRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAALQHMIQPTIAVLTNIGDAHQEN 199 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F+ +E+ K + + E + DD + + S G K +S K+A F Sbjct: 200 FASMEDKCREKMILLKDAE---ILVYPADDPIIQKVVNDSDLRGKKLAWSMS-DKSAPFY 255 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAIKALS 318 ++ ++ + +M + + YH ++ I AD ++ A+ AL Sbjct: 256 IKTVEKKA------------TMTTITY--VYHEHEDWFSIPFIDEASVADAIECAVVALE 301 Query: 319 V----------FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + E R Q TLI++SYN++ S+ A+ +++ Sbjct: 302 MGMSMSALDERMQQLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDQQN 361 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIHVHY 426 R ++ D+ + G + +++ + +S + G + A ++ +P+ Sbjct: 362 RSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNLIEMPKKFFFPT 421 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E + +F Q + +V+++K + F +L L Sbjct: 422 VEAFEKSEVFAQ---LHDEVILLKGARRFNFDQLTERL 456 >gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 517 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 14/292 (4%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168 ++ ITGS GKT+ K + LS + S+N +G+ + + D + I ELG Sbjct: 169 VLGITGSFGKTSVKFISDTILSEGLRVKNTPSSFNTPMGLSKIINNELERDREVFIAELG 228 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 GEI + LV+P I +IT I P H+ F IE I K E+ E L + G NYD Sbjct: 229 AKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELIEDLPEDGIAIFNYD 288 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVH 285 + + + L K+ K Y +G + + ++ E L G ++ Sbjct: 289 NDYVKPLADKTK----KKTYRYGTKDFDKLDVYADEIKVNETGSEFVLHIKGGGEIKCST 344 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N+L +L ++ + +S P E R + N +ID++ Sbjct: 345 RLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNNT---IVIDDA 401 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +N+NP +AA+ VL + H R+I + M E+G++ + + + +V++ Sbjct: 402 FNSNPVGFRAALDVLREFKDH---RKIIITPGMVELGDMEEEENRKIGQVMA 450 >gi|34540830|ref|NP_905309.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis W83] gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas gingivalis W83] Length = 823 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/402 (24%), Positives = 183/402 (45%), Gaps = 16/402 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAV 61 ++ F +L + + ++ IV + + DSR+++ FFA++ DGH +I Sbjct: 1 MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60 Query: 62 QKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +G V++ D++ + + V L AL ++A R +I ITGS G Sbjct: 61 DRGVRSFVISDPSKDLMEKMPQANW--MRVAHPLDALQRIAALRRSMFDIPVIGITGSNG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L L + SYN+ IGVPL++ +M + GIFE G+S +GE+ L Sbjct: 119 KTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P +IT I AH NF I+ K +F TI N D E+ A Sbjct: 179 ESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---LHCHTIVYNGDCE--EIAAAI 233 Query: 239 SHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S + S+ ++K A + + + ++ ++ + GK +V ++++ Sbjct: 234 SFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDII 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + ++S+L +V +A K + P E R + A + G T+I++ Y+ + S+ A+ Sbjct: 294 HCITLISVLCPEVLSARKRFAGLEPVEMRMEVK--AGDHG-NTIINDVYSNDVYSLTLAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + + +++ +L D+ + G + + +A L +Y Sbjct: 351 DFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVY 392 >gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] Length = 813 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 158/354 (44%), Gaps = 28/354 (7%) Query: 33 DSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR IA ++ FFA G DGH +I A KG V+ D + + V + Sbjct: 31 DSRKIAHEKLGVFFAFTGRQ-DGHLYIQDAYNKGVRNFVLEKDAEQEVQMPDANILWVAN 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL LA R + + +I ITGS GKT KE L +S K Y SYN+ +GV Sbjct: 90 SWTALQSLAKHNRSQFQGPVIGITGSNGKTIVKEWLFQLMSPEYKIYRSPKSYNSQLGVA 149 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L+L + + I E G+SH+GE+ L +++P V+T I AH F+ E K Sbjct: 150 LSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTYGVLTNIGIAHQQGFASKLEKTEEK 209 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-Q 269 +F+ E L Y + E ++ + S+G+ ++ ++ ++ + + Sbjct: 210 LRLFKDAET-----LIYPAKYLEAVQIPYKPRKL----SWGEEEDNQLEVYSIRKPEDGE 260 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---LTADVDTAIKALSVFH--PKE 324 +++ + GK+ GI + M I + L DTA+ A + + P E Sbjct: 261 TYVTLYYGGKTF-----GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVE 315 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R + N ++ID+SY+ + S++ A+ L+Q H I +L D+ Sbjct: 316 MRLELKNGKNNT---SVIDDSYSNDLVSLQIALDFLNQ--QHQHTNSILILSDI 364 >gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] Length = 821 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 108/434 (24%), Positives = 170/434 (39%), Gaps = 11/434 (2%) Query: 33 DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR S Q FFA++ DGH++I + VV+T + V D Sbjct: 30 DSRRLSFPEQSLFFALQTKTNDGHNYIQGLYKLRVRNFVVSTFLPEFESMPEANFLVVKD 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L AL KLA R R +I ITGS GKT KE L L + SYN+ +GVP Sbjct: 90 TLKALQKLAAHHRKRFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGVP 149 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L++ +M GIFE G+S E+ L ++ P I VIT I AH NF + K Sbjct: 150 LSVWQMSDKNTLGIFEAGISQPDEMERLQPIIAPTIGVITNIGEAHQENFISSTQKCLEK 209 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +F E I + DD+F +S L K I A + K+ ++ Sbjct: 210 LTLFNDCE---AIIYDGDDAFIANC-IESACLSHKAITWSRTDSEAPLYIESIKKLDSET 265 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + L G +N + + ++ L T++ + F E R Sbjct: 266 IIRCTLLGFDRTYTIPFTDDASIENAIHCMAVMLYLKP---TSVNDIEKFKRLEPVAMRL 322 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 LI+++YN++ S+ A+ + +L D+ + G L +S + Sbjct: 323 DVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVEKNLKCTLILSDILQSGTLPKSLYK 382 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 +A+++ I + G + A I + T D +++++K Sbjct: 383 KVADLVRRKKIDRIIGIGRDLKEYGGAF--DIEKEFYLTTDEFIKSPSFKKFKDELILIK 440 Query: 451 SSNSCGFYRLINLL 464 S F R+ LL Sbjct: 441 GSRQFHFERISELL 454 >gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1] Length = 465 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 17/341 (4%) Query: 68 VVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V + TD + L+ + + VD+ + AL R ++ ITG+ GKTTTKEM Sbjct: 62 VAIVTDKKIDLDQLNDNVTLITVDNSVNALASFTSYYRGLFTIPVVGITGTAGKTTTKEM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHLV 182 L L ++ C +Y + G+ L L + D D +FE+G+S+ G IR + Sbjct: 122 LAHILRG-EQNVQC--TYKSMNGIVLNLKYLLGINEDTDVAVFEMGVSYPGNIRKSGAVF 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I +IT I AHL +E AK E+ E L+ G + LN DD + K H Sbjct: 179 KPSIGMITNIGTAHLETCKTLERYIGAKGEMLEALDYKGQLLLNSDDE--NIKKIDLHPF 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLG 301 +Y FG+ +++ + + +E+ ++ ++G S + V+ G+G N + Sbjct: 237 K-GQVYYFGQKSECAYRISQIEYAAEKMVFQLHVKGHSSKRVYVPGLGEQCVYNAAAAIA 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D+ + I+ + F E R LN+ T+ID+++N+NP+S AA+ VL Sbjct: 296 AAHLTGMDLSSCIERIGSFKQME-RHVSVERGLNRA--TIIDDTWNSNPSSAYAALKVLQ 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 +I+ + + +AV G + +G H+ L + IS Sbjct: 353 KIAEN--KKSVAVFGKLQRLGAKQHEEHVKLGARMKELGIS 391 >gi|242315788|ref|ZP_04814804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106b] gi|242139027|gb|EES25429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106b] Length = 339 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 10/260 (3%) Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 + A G++NN +G+PLTL R+ + ELGM+H GE L + P +A++ Sbjct: 4 RALATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQR 63 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 H + +E +A A + L G DD++ + + + I F Sbjct: 64 EHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATG---NRIVDFALHG 120 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 A + S + + G ++V + +G H A+N L + Sbjct: 121 AAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIK 180 Query: 315 KALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRI 372 L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P R+ Sbjct: 181 VGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RV 235 Query: 373 AVLGDMCEMGELSQSFHIDL 392 V+G+M E+G+ +FH ++ Sbjct: 236 LVIGEMGEVGDEGPAFHREI 255 >gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Chitinophaga pinensis DSM 2588] gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588] Length = 834 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 164/394 (41%), Gaps = 31/394 (7%) Query: 27 VNGISIDSRSIA-PQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + I +DSR ++ P+ + F + + H +I +KG +V ++ V Sbjct: 24 IEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELYEKGVSNFIV-SEPVPEGKYPKAN 82 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + AL+ L R + +I ITGS GKT KE L L SYN Sbjct: 83 IILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTIVKEWLYQLLEKDYNIVRSPKSYN 142 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ +M + IFE G+S GE+ L ++RP+I + T I AH F I Sbjct: 143 SQIGVPLSVWQMKPEHQLAIFEAGISQPGEMEHLEKIIRPNIGIFTNIGEAHNEGFLNIR 202 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + + K +F + + L Y + L + L + + QL W Sbjct: 203 QKINEKLVLF-----SKSDLLIYSKDYLALNEC---VLNFHNLVGKKDNHEGGLQLFTWS 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL------- 317 + +E + + HH + Q + + + I + V+ AI Sbjct: 255 RKTEADLRIISVDKSE----HHSRIDALYQTIPIHINIPFVDEGSVENAIHCWALMLHLG 310 Query: 318 ---SVFHPKEGR--GKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGR 370 SV + + R L QG ++I++SYN++ S+ A+ L Q H Sbjct: 311 MEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIALEFLQQQQQH--PT 368 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 R +L D+ + G+ S + ++A +L I+ V Sbjct: 369 RTVILSDILQSGKSDASLYEEVASLLQQKGINKV 402 >gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis SJ95] gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95] Length = 430 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 101/383 (26%), Positives = 189/383 (49%), Gaps = 37/383 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 IDSR + + F +KG DGH FI A++ GA V+V D+V P + Sbjct: 11 NFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVV------DFPKEKI 64 Query: 89 DDVLGALNKLAVAAR--LRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V L ++ ++A + A + I ITGS GKTTTKE L L + KT+ + N Sbjct: 65 IKVNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNLNT 124 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+PL++ + + I E G+ G++ FL+ +A+IT + +HL +E Sbjct: 125 EIGIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVAIITNVGASHLEFLDSLET 184 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KW 263 +A K +I ++K G + +N D S + L A H + +FG D L+ ++ Sbjct: 185 VAEEKMKITSNMDK-GVLIINGDYSLLKEL-APKHLNRL----TFGTKDENDAVLKSFEY 238 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH-- 321 + ++ LQ M ++H + ++ ++ L +L +D + +F+ Sbjct: 239 NENHTTTFYARILQEDLMVTLNH----YWSEGQILDLLSGLLLLRFIDLPVDPYYLFNIN 294 Query: 322 -PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDM 378 P++ R++ + +G ++++SYNA+ S K+A + + + +SP +I ++G++ Sbjct: 295 IPQD----RFQT-IKRGNLLIVNDSYNASYESFKSAFNSIKKWNLSP-----KIIIMGEI 344 Query: 379 CEMGELSQSFHID-LAEVLSLYN 400 E+G+ S+ +HI + E L++++ Sbjct: 345 KELGKYSEEYHIKVITEALNIFD 367 >gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 237 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 14/226 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 VN IDSR + F +KG + DGH FI +KGA S S +I Sbjct: 22 VNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKGA---------FGSFSSKNIEKS 72 Query: 85 -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL +A + I ITG+ GKTTTKE+L+ LS Y G+Y Sbjct: 73 NVLVVDDTLKALTDIAKYKKDFIDIK-IGITGTAGKTTTKEILSYLLSYFYPVYYTKGNY 131 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+P+TLA + + +G+FELG S G+I +LT ++ +IAVIT + H G Sbjct: 132 NNQIGLPITLANIDKNYRYGVFELGASKKGDISYLTDILNQNIAVITNVGYGHTEGLGGF 191 Query: 204 EEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 E + K I + + K +LN ++ + ++ I ++Y Sbjct: 192 EGVLQEKKNILKTADFKIAPKWLNINEKNIKTFGYENADTNINSVY 237 >gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] Length = 469 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-K 219 + +FE+ +++ G ++ +P I ++ I HL++ EE AKAEI EGL+ Sbjct: 157 EVAVFEMPVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPN 216 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +G + LN DD + + SH G+ I GK ++ FQ + K ++ Q K Sbjct: 217 SGILILNADDENIKRVLDVSHLQGVVYI---GKGDDSQFQAKDIKYAKGGMAFTLKYQNK 273 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + G G H N L + V + D+ AI+ LS+F E ++ LN+ Sbjct: 274 EYDAFIPGYGEHNVYNALAAIAAVFYVGVDISVAIQRLSLFEQVE-EHLEFKRGLNE--C 330 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 T+I++++N++P SM A+ VLS +S E + IA+LG M ++GE Sbjct: 331 TVINDTWNSSPLSMATALGVLSDMSK--EKQSIALLGYMPQLGE 372 >gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners LactinV 03V1-b] gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners LactinV 03V1-b] Length = 198 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 3/175 (1%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ + DSR F + G DGHD++ +AV GA + D +IPV Sbjct: 23 IVSSVVFDSRKAVADSLFVPLVG-ERDGHDYVANAVANGAVAALWQKDHANR--PENIPV 79 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD L AL KLA + T++ ITGS GKTTTK+M+ LS + ++NN Sbjct: 80 LVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMVAAVLSKRFNVHKTQANFNN 139 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 IGVP+T+ M + + E+GM G++ L+ +V P + VIT I AH+ F Sbjct: 140 EIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFF 194 >gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] Length = 821 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 163/389 (41%), Gaps = 39/389 (10%) Query: 33 DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89 DSR S Q FFA+K DGH +I + VV +DM+ S+ F V Sbjct: 30 DSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL KLA R + +I ITGS GKT KE L L + SYN+ +GV Sbjct: 89 DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M GIFE G+S E+ L ++ P I +IT I AH NF + Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F E I + DD F +S L K I W + + Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250 Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315 + + ++ + K E + H +G++ +N++ + ++ L T++ Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ F E R LI+++YN++ S+ A+ + + +L Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404 D+ + G L +S + +A+++ I + Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396 >gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B] gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B] Length = 821 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89 DSR ++ P+++ FFA+K DGH +I + VV +DM+ S+ F V Sbjct: 30 DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL KLA R + +I ITGS GKT KE L L + SYN+ +GV Sbjct: 89 DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M GIFE G+S E+ L ++ P I +IT I AH NF + Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F E I + DD F +S L K I W + + Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250 Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315 + + ++ + K E + H +G++ +N++ + ++ L T++ Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ F E R LI+++YN++ S+ A+ + + +L Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404 D+ + G L +S + +A+++ I + Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396 >gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] Length = 461 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 12/290 (4%) Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 IFELG+ + G I+ + +P I +IT I HL +E AKAEI EG+++ GT Sbjct: 161 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIKEDGT 220 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + +N DD+ + + K I FG AD++ K + + +++ + Sbjct: 221 LIINADDANTKKISLKRFK---GKIIKFGLQDTADYKASKVEFANTGMKFVLEVADERYN 277 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G G H N L + + + AI L F + R + L G T+I Sbjct: 278 VFVPGYGEHQVYNALAAIAASHEMGLTIRQAIAGLRTF-KQMARHLEFTTGL--GDSTII 334 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++ NP S++AA+ V+ + + + I VLGD+ +G + +H ++ ++++ I Sbjct: 335 DDTWTNNPTSVEAALKVIDTVGK--DKKVILVLGDIKRLGNFEEKYHREIGSMVAVRKID 392 Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + G + D + S VH + + G+ ++ L D D +V+ Sbjct: 393 TLITIGKRAEKIADQAQKDGTSAEVHTFKEVAGVLELLKPKL-DADTIVL 441 >gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13] gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13] Length = 821 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89 DSR ++ P+++ FFA+K DGH +I + VV +DM+ S+ F V Sbjct: 30 DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL KLA R + +I ITGS GKT KE L L + SYN+ +GV Sbjct: 89 DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M GIFE G+S E+ L ++ P I +IT I AH NF + Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F E I + DD F +S L K I W + + Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250 Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315 + + ++ + K E + H +G++ +N++ + ++ L T++ Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ F E R LI+++YN++ S+ A+ + + +L Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404 D+ + G L +S + +A+++ I + Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396 >gi|150009966|ref|YP_001304709.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Parabacteroides distasonis ATCC 8503] gi|255012771|ref|ZP_05284897.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. 2_1_7] gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503] Length = 821 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 39/389 (10%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VD 89 DSR ++ P+++ FFA+K DGH +I + VV +DM+ S+ F V Sbjct: 30 DSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRVRNFVV-SDMLPEFESMKDANFLIVK 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL KLA R + +I ITGS GKT KE L L + SYN+ +GV Sbjct: 89 DTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKEFLYQLLHNEFNIVRSPRSYNSQLGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M GIFE G+S E+ L ++ P I +IT I AH NF + Sbjct: 149 PLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCME 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F E I + DD F +S L K I W + + Sbjct: 209 KLTLFNDCE---AIIYDGDDLFIANC-IESACLSHKAI--------------AWSRTDSE 250 Query: 270 SWMEVQ-LQGKSMEVVHHG--IGYHMA-----------QNMLMTLGIVSILTADVDTAIK 315 + + ++ + K E + H +G++ +N++ + ++ L T++ Sbjct: 251 APLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMAVMLYLKP---TSVN 307 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ F E R LI+++YN++ S+ A+ + + +L Sbjct: 308 DVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRRVGKQLKSTLIL 367 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHV 404 D+ + G L +S + +A+++ I + Sbjct: 368 SDILQSGTLPKSLYKKVADLVRRKKIDRI 396 >gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] Length = 500 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 164/397 (41%), Gaps = 50/397 (12%) Query: 10 LLQAIQGH-SIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LLQ + G+ ++ +N I +S ++ + F A KG +DGHDFIL A KGA Sbjct: 8 LLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGAS 67 Query: 67 LVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAITGSV 117 L++ + + + + SL + V+D+ A AA L K I+ +TG+ Sbjct: 68 LIIAQDEEKIPTNDSLQYII--VEDIKKA------AADLSHKLFDISPDDFKILGVTGTN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM----SHLG 173 GK+TT ++ L K I + I + + + P + I EL S Sbjct: 120 GKSTTVSLVHHILQKSDKDSTLISTV--EIKIKDEVVKEPYNTTPSILELSKILKNSKEN 177 Query: 174 EIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 I F+ V H I T I HL EE S K + L+ Sbjct: 178 NIEFINMEVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDE 237 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-K 279 G I +N D L K + ++G KNADF + ++Q +Q ++ + K Sbjct: 238 GKIVINLD-----RLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHK 292 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S E+ H IG N+ I ++ + + I ++S F GR + + + GFF Sbjct: 293 SYEIRSHLIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFF 352 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +ID + P ++ + S I+ EGR I V G Sbjct: 353 AVID--FAHTPDALNEVLKTASSIT---EGRIITVFG 384 >gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823] gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823] Length = 762 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 27 VNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I DSR I Q+A FFA+ G G++FI +A Q+G V+ + + + Sbjct: 26 ITHIYFDSRKI--QQANGALFFALSGHSRSGNEFIENAYQQGIRFFVIAKNASSKFHPDA 83 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + F V++ L AL +LA R + ++AITGSVGKTT KE + +S K S Sbjct: 84 L-YFQVEEPLTALQQLATHHRKQYTYPVVAITGSVGKTTFKEWIFHCISDKFKVVRSPKS 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ IGV L+L M + E G+S GE++ L +++P + T AH NF+ Sbjct: 143 FNSQIGVALSLLEMHENASIAFIEAGISKPGEMKILRDMIQPDFGIFTAFGKAHRENFAD 202 Query: 203 IEE 205 EE Sbjct: 203 NEE 205 >gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301] Length = 789 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 27 VNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V + DSRS+ + F A+ G ++D H F+ +G +V + A Sbjct: 23 VQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQMYARGVRAFMVERPLEA------ 76 Query: 83 IPVFG---VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P G V++ + AL LA R + + T++ ITGS GKT KE + L + K Y Sbjct: 77 LPECGYVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKTVIKEWIAEELPAGMKCYRS 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 SYN+ +GVPL++ + D + E G+S GE+ L ++RP + V T+I AH N Sbjct: 137 PKSYNSQLGVPLSVLMIEGDEQLALIEAGISKPGEMARLERIIRPDVVVFTSIGDAHQEN 196 Query: 200 FSGIEEIASAK 210 F +E+ K Sbjct: 197 FLNLEQKCDEK 207 >gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] Length = 815 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 175/385 (45%), Gaps = 18/385 (4%) Query: 26 FVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + I+ DSR I AF AI G FI A+ +G V+++ +++ Sbjct: 23 LIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIESAMDRGIK-VIISEHHYPEFENITW 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + V++ + L KLA S I ITGS GKT KE L L + T S+ Sbjct: 82 II--VENSVAFLQKLAKYHFENSHLQSIGITGSNGKTILKEWLYQCLWNEFPTVKSPKSF 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IG+PL+L ++ GIFE+G+S E+ L ++ P I ++T I AH +NFS Sbjct: 140 NSQIGLPLSLLQINDSHQLGIFEVGISKPHEMEKLENIFHPQIGLLTHIGTAHAANFSSE 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 EE+ K +F+ E I N D+ + S++ Y F K Q+ Sbjct: 200 EELIDEKIRLFKNSE---VIIYNGDNDLVDQKIKNSYSDKKLIAYGFKKEN----QVFIK 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S+ + V+ G+ + H N + + ++ L + ++ +++ Sbjct: 253 SNISKDENIIVEYFGEEISFPAHQRDEATLTNAMALITVLKELNIENKKIVEKINLLKAV 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 E R + N+G +I++S+N + S+K A+ L++ + + ++ VL D+ + Sbjct: 313 EMRLEAIEG--NKGNI-VINDSFNLDLDSLKTALQFLNE---YNKAKKSLVLTDIVGVST 366 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + ++AE+++ N V+L G Sbjct: 367 NAKELYEEVAELVNDQNFDSVFLIG 391 >gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 492 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 40/393 (10%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P+ DLL+ ++ H I P ++G+ DSR P+ F AIKG DG ++ A++ Sbjct: 9 PIMRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIK 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKT 120 GA VV + D+ G + V V+D A+ K+A SK T+I ITG+ GKT Sbjct: 68 NGAVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFG-IFELGMSHLGEIR 176 + ML L +G+ N IG +P T P +D +F L M + G ++ Sbjct: 125 SVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHT-TPESLDLQELFSL-MVNEG-VK 181 Query: 177 FLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 ++ V H IAV T ++ HL +EE A K+++F+ +K I Sbjct: 182 YVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVI 241 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD + ++ S + ++G A ++ K +VQ+Q K E+ Sbjct: 242 --NIDDKYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L + + L + + +ALS K G+ + F+ ID Sbjct: 296 SLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTVK---GRFEPVETGRDFYVFID 352 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ +++ + + GR+I V G Sbjct: 353 --YAHTPDGIR---NIMEALKEYEAGRKILVFG 380 >gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bulleidia extructa W1219] gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bulleidia extructa W1219] Length = 523 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 164/358 (45%), Gaps = 24/358 (6%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168 I ITGS GKT+TK ++ + + SYN +G+ +T+ P+ F + E+G Sbjct: 181 IGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKPIHQVF-VCEMG 239 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+GEI L V+P I V+T++ P HL F +E I K ++ E L K G +N D Sbjct: 240 ADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENIIHEKMQMIERLPKDGLGVINLD 299 Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + K+ + SFG +S++ D++ K + S+ V + K EV H Sbjct: 300 NDYIRQYRVKNSV----PLISFGIQSEDVDYRAVKISYTTTGSYFTV-VHAKE-EVAFHT 353 Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L + + L + +A++ E R + + ++ ID++ Sbjct: 354 KLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRLELKKINGHR----FIDDA 409 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NANP K A+ VLS + G+R + M ++G+ ++ + + + + + Sbjct: 410 FNANPIGAKMALEVLSMMP----GKRYIITPGMIDLGKKQDEYNREFGKRMKHFVDEVIL 465 Query: 406 LSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + A+++ L + H+H +T+ ++ + D +++++ F R Sbjct: 466 VGPKQTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTILLENDLPEAFSR 523 >gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] Length = 469 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 9/224 (4%) Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-K 219 + +FE+ +++ G ++ +P I ++ I HL++ EE AKAEI EGL+ Sbjct: 157 EVAVFEMPVAYPGYLKVACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPN 216 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +G + LN DD + + SH ++ + GK+ ++ FQ + K ++ ++ Q Sbjct: 217 SGILILNADDENIKRVLDVSH---LQNVVYIGKNDSSQFQAKDIKYANKGMAFTLKYQNT 273 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + G G H N L + V + D+ AI+ LS+F E ++ +N+ Sbjct: 274 EYDAFIPGYGEHNVYNALAAIAAVFYVGIDISVAIQRLSLFEQVE-EHLEFKRGMNE--C 330 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 T+I++++N++P SM A+ VLS +S E + IA+LG M ++GE Sbjct: 331 TVINDTWNSSPLSMATALGVLSDMSK--EKQSIALLGYMPQLGE 372 >gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] Length = 457 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 12/290 (4%) Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 IFELG+ + G I+ + +P I +IT I HL +E AKAEI EG+ GT Sbjct: 156 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGT 215 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + +N DD+ E + S+ I FG +AD++ + +++ Sbjct: 216 LIINADDANIEKI---SYQKFKGKIIKFGLQDSADYKASAIQFAHTGMKFVLEVADTKYN 272 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G G H N L + S + + AI L F + R + L G T+I Sbjct: 273 VFVPGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRSF-KQMARHLEFTTGL--GDSTII 329 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++ NP S++AA+ VL + E + I VLGD+ +G + +H ++ ++ I Sbjct: 330 DDTWTNNPTSVEAALKVLDTVGK--EKKVILVLGDIKRLGNFEEKYHREIGSKVAERQID 387 Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + G A+ D + VH + + G+ ++ L D D +V+ Sbjct: 388 TLITIGKRAEAIADQAKKDGTKAEVHTFKDVIGVLEILKPKL-DADTIVL 436 >gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 462 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 12/290 (4%) Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 IFELG+ + G I+ + +P I +IT I HL +E AKAEI EG+ GT Sbjct: 161 AIFELGLGNTGNIKHQCMIYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGT 220 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + +N DD+ E + + I FG +AD++ + +++ Sbjct: 221 LLINADDANIEKISLQKFK---GKIIRFGLQDSADYKASAIEFAHTGMKFVLEVADTKYN 277 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G G H N L + S + + AI L F + + G T+I Sbjct: 278 VFVPGYGEHQVYNALAAIAACSEMGLSIRQAIAGLRTF---KQMARHLEFTKGIGDSTII 334 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++ NP S++AA+ VL + E + I VLGD+ +G + +H ++ ++ I Sbjct: 335 DDTWTNNPTSVEAALKVLDTVGK--EKKVILVLGDIKRLGNFEEKYHREIGSKVAERQID 392 Query: 403 HVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + G A+ D + VH + + G+ ++ L D D +V+ Sbjct: 393 TLITIGKRAEAIADQAKKDGTKAEVHTFKDVTGVLEILKPKL-DADTIVL 441 >gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis 315-B] gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis 315-B] Length = 510 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 32/298 (10%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 + S ++ ITGS GKT+ K + L +T S+N +G+ + +D + Sbjct: 155 KKESGLKVLGITGSFGKTSVKFISDTILKEKYRTKNTPSSFNTPMGLSKVINN-ELDKNH 213 Query: 163 GIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 +F ELG GEI + LV P I +IT + P H+ F IE I + K E+ E L + Sbjct: 214 EVFIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELIEDLPED 273 Query: 221 GTIFLNYDDSFFELL----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G NYD+ + + L K K++ GIK I + D + + V Sbjct: 274 GIAIFNYDNDYVKPLADKTKKKTYRYGIKDI------EKLDVYAKD---------IRVNE 318 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-IKALSVFHPKEGRGK------R 329 +G + + G+G ++L+ + +S L A A + ++ K G K R Sbjct: 319 KGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHR 378 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + +ID+++N+NP +AA+SV+ + EG++I + M E+G + + Sbjct: 379 LNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIIITPGMVELGAIEEE 433 >gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC BAA-286] Length = 823 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 14/362 (3%) Query: 33 DSRSI-APQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR + P E FFA+ + DGH +I + G VV+ + V + Sbjct: 30 DSRQVFYPAETLFFALSTKNNDGHKYINELYELGVRNFVVSQILPDWENYNDANFLVVTN 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L AL ++A R + +I ITGS GKT KE L L SYN+ IGVP Sbjct: 90 TLAALQRIAAYHRNQFDIPVIGITGSNGKTVVKEWLYQILHQDFNITHSPRSYNSQIGVP 149 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L++ +M GIFE G+S E+ L ++RP I ++T I AH F +++ K Sbjct: 150 LSVWQMNDHTQLGIFEAGISQPEEMSKLEAIIRPTIGILTNIGQAHQEGFKSMKQKCLEK 209 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E+F + I ++ + + + +S S + + K ++ + + Sbjct: 210 LELFINCD---VIICEEENELIDECMEIACLSHKRLTWSRRGSSKSPLYIMKIEKQEKST 266 Query: 271 WMEVQLQGKSMEVV---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + G + ++V A ++L T + + D++ + L E Sbjct: 267 TIHYSVLGMASKLVIPFSDDASIEDAIHVLATAFYLHMSLPDINERMSTL------EPVA 320 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 R + TLI++SYN++ S+ A+ L+Q + E +++ ++ D+ + G + + Sbjct: 321 MRLDVRQGKNNSTLINDSYNSDINSLNIALDFLAQRATTSEQKKVLIISDIPQSGLIPRE 380 Query: 388 FH 389 + Sbjct: 381 LY 382 >gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD] Length = 741 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 17/323 (5%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD + L KLA I ITGS GKT KE L LS + S+N+ I Sbjct: 11 VDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKSPKSFNSQI 70 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PL+L + + GIFE+G+S E+ L + P I V+T I AH+SNF + + Sbjct: 71 GLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLV 130 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL-GIKTIYSFGKSKNADFQL-RKWKQ 265 K +F+ E +I N D+ L+ K + L K + S+G +K+ + + WK Sbjct: 131 DEKISLFKDSE---SIIFNGDNI---LVSNKINTLYSSKNLISYGFNKDNNIHISSNWK- 183 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 Q + VQ KS N+L + ++ +L + I+ ++ E Sbjct: 184 -DRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEM 242 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + N +I++S+N + S+K A I + + ++ ++ D E + + Sbjct: 243 RLESVNGIKNN---LIINDSFNLDLDSLKIAFEF---IKSYQKPKKSLIITDFTEKSD-A 295 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 + + ++A +++ N + V+L G Sbjct: 296 DNLYQEVASLINEQNFNKVFLIG 318 >gi|219558136|ref|ZP_03537212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T17] Length = 268 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 67/121 (55%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E+ Sbjct: 53 TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILEMA 112 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN D Sbjct: 113 ARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNAD 172 Query: 229 D 229 D Sbjct: 173 D 173 >gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 14/282 (4%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168 ++ ITGS GKT+ K + LS + S+N +G+ + + + I ELG Sbjct: 163 VLGITGSFGKTSVKFISNTILSEGLRVKNTPSSFNTPMGLSKIINNELENTTEVFIAELG 222 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 GEI + LV+P+I +IT I P H+ F I+ I + K E+ E L + G NYD Sbjct: 223 AKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNIQNTKYELIEMLPENGVAIFNYD 282 Query: 229 DSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVH 285 + + + L K+ IKTI Y + D + + + ++ G+ +E Sbjct: 283 NDYVKPLADKTE---IKTIRYGIKDVEKLDVYATDISVDEMGSKFILHIRELGE-IECES 338 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N+L IL ++ + P E R N G +ID++ Sbjct: 339 KLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHRLNIVNS--NSGVI-VIDDA 395 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +N+NP +AA+ V+S+ +GR+I + M E+G++ + Sbjct: 396 FNSNPIGFRAALDVISEFK---DGRKIIITPGMVELGDMEEE 434 >gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 523 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 19/292 (6%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 + K A R II ITGS GKT+ K +L + A SYNN +G+ T+ Sbjct: 166 MQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTIL 225 Query: 155 R--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 P+ F + E+G H+ EI L VRP ++T + HL+ F +E I K + Sbjct: 226 EYLQPLHELF-LCEMGADHVHEIEELMKFVRPQYGIVTAVGQQHLATFHSMENILHEKMQ 284 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E L + G FLN D+ + + H + I+ FGK AD++ E S Sbjct: 285 MIEQLGREGIGFLNADNEWIRSYPLRVHC---RVIW-FGKDMLADYRYGNVSYDEEGS-- 338 Query: 273 EVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + K++ V H +G H N+ + + L D K R ++ Sbjct: 339 RFTITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLPYVTHRLEKK 398 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + A +TL+D++YNANP + A+ VL ++ +RI + + ++G Sbjct: 399 QMA----DYTLLDDAYNANPKGARYALDVLREMP----QQRIIITPGLIDLG 442 >gi|99036017|ref|ZP_01315056.1| hypothetical protein Wendoof_01000094 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 163 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 9/154 (5%) Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S R++A+L Sbjct: 14 ALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQ---RKVALL 70 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLF 434 GDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I H++++ + L Sbjct: 71 GDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDS-NQLK 129 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + + D ++VK S ++L++ EF Sbjct: 130 SDLANIIQNNDAILVKGSRGMK----MDLIVREF 159 >gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 482 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 102/387 (26%), Positives = 167/387 (43%), Gaps = 40/387 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+ ++ H I P ++G+ DSR P+ F AIKG DG ++ A++ GA V Sbjct: 5 DLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + D+ G + V V+D A+ K+A SK T+I ITG+ GKT+ ML Sbjct: 64 VTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLV 182 L +G+ N IG +P T P +D +F L M + G ++++ V Sbjct: 121 KAILEQQNNKVGLVGTIQNMIGDRVIPTTHT-TPESLDLQELFSL-MVNEG-VKYVVMEV 177 Query: 183 RPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 H IAV T ++ HL +EE A K+++F+ +K I N DD Sbjct: 178 SSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVI--NIDD 235 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + ++ S + ++G A ++ K +VQ+Q K E+ G Sbjct: 236 KYSSMMIESSKG----KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L + + L + + +ALS K G+ + F+ ID Y Sbjct: 292 LFSVYNALAAITVADFLGIPLRSVREALSHVTVK---GRFEPVETGRDFYVFID--YAHT 346 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ +++ + + GR+I V G Sbjct: 347 PDGIR---NIMEALKEYEAGRKILVFG 370 >gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM 16795] gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM 16795] Length = 175 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 77/148 (52%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + IDSR FFAI G DGH FI A++ G ++ N I + + Sbjct: 27 INELVIDSRIANKNSVFFAIIGESLDGHKFINSAIENGCKTIIKNKSNNFEIIGEDLNII 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V++ AL +A + + I ITGSVGKT+T++M+ A+SS KT G+ NN Sbjct: 87 EVENTEFALGDIARYYKSKFDIPYIGITGSVGKTSTRDMVFSAVSSKFKTLKNTGNLNNQ 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGE 174 GVPLTLA + + + E+GMS E Sbjct: 147 FGVPLTLANLDKSYECAVIEMGMSGFNE 174 >gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] Length = 790 Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 113/441 (25%), Positives = 189/441 (42%), Gaps = 58/441 (13%) Query: 33 DSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFGV 88 DSR S + F A+KG ++D H FI V++ A L T + A G + +P Sbjct: 29 DSRNCSFGEEPLFVAMKGTNHDSHAFIGEMVRRDVKAFLAERKTQLPAGCGCVVVP---- 84 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + AL +LA R R K ++ ITGS GKT KE + + + K + SYN+ +G Sbjct: 85 -SAIAALQQLAAHHRTRFKGRVVGITGSNGKTVVKEWIAQQIPAGVKYFRSPKSYNSQLG 143 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 V L+L + D + + E G+S GE+ L ++RP + T+I AH NF+ +EE ++ Sbjct: 144 VALSLLMIEGDEELALIEAGISCPGEMVRLERMIRPDTVIFTSIGEAHQENFTSLEEKSA 203 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K + +G TI + S E + I+T+Y R+ + +E Sbjct: 204 EKLVLAKGAR---TIIYHGGSSLLERM--------IRTLYGG----------RQLQDAAE 242 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 E G V+ G G AQ V + + P GR + Sbjct: 243 YPLPEQLPAG----VLESGAGRVDAQL--------------VGAFCRVMGFPDPDFGRIR 284 Query: 329 --RYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDMCEMGE 383 R L +G LID++YN++ S+ A+ L ++ GR + +L D+ + G Sbjct: 285 PVAMRLELKEGINGSLLIDDAYNSDINSLSIALDYLHNMAA---GRPMTLILSDIEQSGV 341 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + ++A +++ +S + G + + + T D L ++ V Sbjct: 342 EDGVLYGEVARLVAAAGVSRLIGVGDRIRNAGANF--ACDSAFYRTTDELLRNLRRDDVA 399 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 G VV++K S F R+ + L Sbjct: 400 GRVVLIKGSRDSHFERVSHAL 420 >gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145] gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145] Length = 818 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 24/387 (6%) Query: 23 PQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P ++ + DSR + + FF +KG + H +I KG V D I + Sbjct: 24 PNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYHKGVRSFVY-YDQGFDITN 81 Query: 81 LSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 F D L AL LA R + +I ITGS GKT KE L L+ Sbjct: 82 FPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVVKEWLYQLLAYKYTIVRS 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 SYN+ IGVPL++ +M + IFE G+S GE+ L +++P I V T I +H Sbjct: 142 PKSYNSQIGVPLSIWKMDTLYNLAIFEAGISQTGEMERLEKIIKPSIGVFTNIGSSHDEG 201 Query: 200 FSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 FS EE + K ++F + K F Y +L + +L T + K + + Sbjct: 202 FSDKEEKIAEKFKLFAHVNKLICNKEFSEYAPQSVDLY---TWSLDDNTANLYVKEISVE 258 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 K E + +++ K + I L+ + + ++++ + L Sbjct: 259 DTGTSIKSTYEDREISIKIPFKDKASTENAI------TCLLVMLVFGYSESEIEDKMSKL 312 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 HP + R + + +N ++ID+SYN++ +S++ A+ L+ H + +L D Sbjct: 313 ---HPVKMRLE-MKSGINNT--SIIDDSYNSDLSSLEIALDFLNHQQQH--QNKTLILSD 364 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHV 404 + + G Q + +A +L + V Sbjct: 365 IQQSGLDGQQLYQTVARLLESKGVDKV 391 >gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Chlorobium tepidum TLS] gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium tepidum TLS] Length = 508 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 157/371 (42%), Gaps = 43/371 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + G++ DSR++ P F A++G DGH FI A++ GA V V + + + S S+ Sbjct: 33 RAVITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGA--VAVACEELPAAYSDSV 90 Query: 84 PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D AL +L+ A K +I +TG+ GKTTT ++T L++ IG Sbjct: 91 TWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYIG 150 Query: 142 SYNNHIG---VPLT-----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + IG +PL L R VD + +S + H + A Sbjct: 151 TGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRAA 210 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + P HL +EE A AK +F+ L G +N DD E + A+ L + + Sbjct: 211 VFTNLTPEHLDFHETMEEYAEAKRLLFDQLNAEGFAVINADDPRAEFMAAR---LAPERV 267 Query: 248 YSFGKSKNADF--QLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + N R++ E S +V G+SM + G + NML Sbjct: 268 FCCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAF 327 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMK 354 + L D TA+++L+ GR +R RCA ++D Y P +++ Sbjct: 328 TVGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCA-------VVD--YAHTPDALQ 378 Query: 355 AAISVLSQISP 365 A+ L ++P Sbjct: 379 KALEALRAVTP 389 >gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neorickettsia risticii str. Illinois] gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neorickettsia risticii str. Illinois] Length = 326 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 128/298 (42%), Gaps = 18/298 (6%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S+D + E F ++D H I A GA ++ D + IP+ VDD Sbjct: 32 SMDYEKVGKGEIFVTADAKNHDTHHLIETAYLNGALAIITKKDTACP--KVPIPIIKVDD 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L A+ KLA + +I ITGS GKT TK ++ L + KT + G Sbjct: 90 PLRAMEKLAAILIRNYQPIVIGITGSSGKTLTKNLIVTLLKNYGKTCYNEDGAGDFTGFT 149 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA--PAHLSNFSGIEEIAS 208 L + F + E+ +H G I + P + VIT I PA + E Sbjct: 150 LGILNADFPCKFLVLEVDTTHSGNIDLFNQITLPKVGVITDIRFHPARSIDLR--ESTVR 207 Query: 209 AKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 KA+IF+ G + LN+D + ELL ++ TI SFG ++N D +L + Sbjct: 208 EKAKIFQN----GCVAVLNFDTPYTELLLQEARK-NKATIISFGGNENCDVRL--LSHSN 260 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323 + +++ K+ ++ H H+ +L T+G++ L V ++ LSVF K Sbjct: 261 NTAVVKIGRSQKTYKLSDH--NQHLKCAVLATIGVMKALKLKVTRNSLNNTLSVFQSK 316 >gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] Length = 484 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++GI++DSR I P F A+KG DGH +I A++KGA VV I +++ I V Sbjct: 23 ISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +DV+G KLA SK ++ +TG+ GKTT +L I + Sbjct: 83 NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139 Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182 N+I P+T L RM + + E + +G ++F Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + T + HL +E AK F+GL KT N DD + KAK Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLDDKNGLVMTQNTKAK 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H ++++ +DF+ + + E +++ ++EV IG A N+L Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + ALS P GR R +G+ ++D Y P +++ ++ Sbjct: 301 VYGAACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+G I V+G Sbjct: 357 AIHEVL-NGKGHVITVVG 373 >gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] Length = 484 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++GI++DSR I P F A+KG DGH +I A++KGA VV I +++ I V Sbjct: 23 ISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +DV+G KLA SK ++ +TG+ GKTT +L I + Sbjct: 83 NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139 Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182 N+I P+T L RM + + E + +G ++F Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + T + HL +E AK F+GL KT N DD + KAK Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLDDKNGLVMTQNTKAK 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H ++++ +DF+ + + E +++ ++EV IG A N+L Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + ALS P GR R +G+ ++D Y P +++ ++ Sbjct: 301 VYGAACLLGKKAEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+G I V+G Sbjct: 357 AIHEVL-NGKGHVITVVG 373 >gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 489 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 102/391 (26%), Positives = 163/391 (41%), Gaps = 38/391 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 QG++ G++IDSR + P + + AI+G DGH FI AV +GA VV D + Sbjct: 14 QGWIRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDV 73 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V A + L+ V T++ +TG+ GKTT+ LT L + Sbjct: 74 PYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGMLS 133 Query: 142 SYNNHIG---VPLTLARMPVD---------VDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187 S N G VP L + VD G + +S G ++ T V +A Sbjct: 134 SVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIK 245 + T + HL +E A+AKA +F GL EK G I LN DD + +++ + Sbjct: 194 IFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAI-LNRDDPYADVMAENC----VA 248 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I ++G ++ D + R + ++ + ++L G+ +E V H G + N+L + Sbjct: 249 PIVTYG-VRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAAY 307 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L D + GR R G ++D Y P +++ +S Q + Sbjct: 308 VLGVSADDIAGVIPTLPTIPGRMHVIRP--EHGPTVIVD--YAHTPDALRQILSTARQWT 363 Query: 365 P-------HGEGRRIAVLGDMCEMGELSQSF 388 G G R G EMG ++ S Sbjct: 364 SGRVWLVFGGRGERDR--GKRPEMGAIAASM 392 >gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] Length = 246 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGHD++ A+ GA VAS+ S Sbjct: 27 IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 76 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VDD L AL +LA R +I ITGS GKTT K+++ L S + + Sbjct: 77 PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 G++N+ IG+PLT+ M D +F I E+GMS G Sbjct: 137 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 170 >gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium cellulovorans 743B] gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium cellulovorans 743B] gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B] Length = 471 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 106/453 (23%), Positives = 193/453 (42%), Gaps = 29/453 (6%) Query: 28 NGISIDSRSIAPQEAFFA----IKGPHYDGHDFILHAVQ--KGAGLVVVNTDMV--ASIG 79 N SI+ S P F IK H + D ++ ++ K +G+++ N D++ ++ Sbjct: 22 NNKSIERFSSYPNCPLFRSLHFIKN-HINNKDNLISRLETYKVSGIIIDNCDLIDLKNLS 80 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S I V V ++ A + R + + + GS GKTTTKEML L + T Sbjct: 81 SKGIGVILVKNLNKAYEDIVQLYRKQFDIPFVQVIGSSGKTTTKEMLGSILRTKLNTLVS 140 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 + N+ GV L ++ + E GM G I T +++P ++T I AHL Sbjct: 141 FENLNSPSGVAYNLLKLTAKHQAAVLETGMRSKGVISRSTSIIQPDYVIVTCIHRAHLVT 200 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 +E I AK+E L + +N DD + L + + +FG SK+ D Sbjct: 201 VGSLENIIKAKSEFIGFLSPESLVIINGDDENCKKLPLDQYQ---GKVLTFGMSKSCDIW 257 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 ++ + + + + ++ + IG + N L + + L + L Sbjct: 258 AKEIQYDDFKMHFKACTRNLEIDCTINTIGIYNVLNALAAIILSLNLGFSKQEIQEGLLQ 317 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGDM 378 F P R + + N F +I++++NANP S I+++ +I +G+ I VLGD Sbjct: 318 FKPMYNRLQVVKRNKN---FCIINDTFNANPDS---TIALVEEIQNFAQGKPIILVLGDF 371 Query: 379 ----CEMGELSQSFHIDLAEVLS---LYNISHV--WLSGFHVLALKDALPRSIHVHYSET 429 + E +S H ++ + + LY + + W A+ + P +++ Sbjct: 372 ENPNYQDTEYPESVHYEVGKKAASAMLYRLIAIGKWADSLIKGAVDNGYPIKNTGCFTKP 431 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + F++ S+V ++++ KSS LIN Sbjct: 432 -EYAIDFLKQSIVKNNIIIFKSSVHTNLTVLIN 463 >gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] Length = 484 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++GI++DSR I P F A+KG DGH +I A++KGA VV I +++ I V Sbjct: 23 ISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +DV+G KLA SK ++ +TG+ GKTT +L I + Sbjct: 83 NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139 Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182 N+I P+T L RM + + E + +G ++F Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + T + HL +E AK F+ L KT N DD + KAK Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H ++++ +DF+ + + E +++ ++EV IG A N+L Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + ALS P GR R +G+ ++D Y P +++ ++ Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+G I V+G Sbjct: 357 AIHEVL-NGKGNVITVVG 373 >gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] Length = 480 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 49/381 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+S DSR++ P +F + G DGHDFI A++ GA + +V++ + ++ S + Sbjct: 11 PTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGA-VCIVHSKELLNMASGA 69 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + + V+DV A+NK+A A+ K + +TG+ GK+T ++ ++ K I Sbjct: 70 VYI-RVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMIND-KTPCGYI 127 Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G+ G + LA M V V L +S G + + Sbjct: 128 GTIAIKYGDIELQPNLTTPDALFLQSKLADM-VRVGMKACALEVSSHGLAQHRVDGISFD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGI 244 A+ T + HL +E AK+ +F+ L ++ G LN DD +E LK S A Sbjct: 187 CAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDCSKA--- 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + S+G +K AD++ K S QG ++V+ G Y + N++ + + Sbjct: 244 -RVVSYGINKEADYRAINIKMSS---------QGTQFDLVYSGHMYPIKTNLVGNFNVYN 293 Query: 305 ILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L A D+D I+ S EGR +R C Q + ++D ++ P M+ Sbjct: 294 LLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDCG--QPYNVIVDFAH--TPDGMEK 349 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + I+ G R IAV G Sbjct: 350 MMQFGRSITMPGH-RLIAVFG 369 >gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 252 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 33 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ LSS + + G++N Sbjct: 88 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKTKGNFN 147 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M + +F I E+GMS G Sbjct: 148 SQIGLPLTILEMKRNTEFLILEMGMSEKG 176 >gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] Length = 243 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGHD++ A+ GA VAS+ S Sbjct: 24 IHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VD+ L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 74 PKGVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 G++N+ IG+PLT+ M D +F I E+GMS G Sbjct: 134 KGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 167 >gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 153 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + +G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +L PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDVANPPENL--PVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL 153 ++T L++ K G++NNHIG+PLT+ Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTI 151 >gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855] gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter ruber DSM 13855] Length = 543 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 13/307 (4%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163 RS +++ ITGS GKT+TK ++ L YA SYN +G+ L + + + Sbjct: 191 RSDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVL 250 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E G+ + G++ L + P +V+TTI AHL + IA+ K + E G Sbjct: 251 VLEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDRIAAEKGVLVERTAPDGPA 310 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSME 282 LN DD + A+ A + I + G +AD + ++ G ++ Sbjct: 311 VLNADDERVAAM-AERAAGPVWRISTEGHP-DADITADDIRYDTGGTAFDVTDDTGTTVT 368 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTL 341 +G H N+L+ + + + + A+ P E +R L ++G T+ Sbjct: 369 FETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIE-----HRLQLRSRGDVTI 423 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID+++N+NP + A+ +LS++ G+R+ V M E+G+ + + D VL+ +++ Sbjct: 424 IDDAFNSNPVGARNAVEILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDL 480 Query: 402 SHVWLSG 408 V L G Sbjct: 481 DLVVLVG 487 >gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] Length = 484 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++GI++DSR I P F A+KG DGH +I A++KGA VV I +++ I V Sbjct: 23 ISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +DV+G KLA SK ++ +TG+ GKTT +L I + Sbjct: 83 NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139 Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182 N+I P+T L RM + + E + +G ++F Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + T + HL +E AK F+ L KT N DD + KAK Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H ++++ +DF+ + + E +++ ++EV IG A N+L Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + ALS P GR R +G+ ++D Y P +++ ++ Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+G I V+G Sbjct: 357 AIHEVL-NGKGNVITVVG 373 >gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 252 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS+++ F I DGH+++ A+ GA + + S GS IP Sbjct: 33 IHGVCIDSKNMKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 88 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 147 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D +F I E+GMS G Sbjct: 148 SQIGLPLTILEMKRDTEFLILEMGMSEKG 176 >gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D4] gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides dorei 5_1_36/D4] Length = 484 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 159/378 (42%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++GI++DSR I P F A+KG DGH +I A++KGA VV I +++ I V Sbjct: 23 ISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCENLPETLIENVTYIKV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +DV+G KLA SK ++ +TG+ GKTT +L I + Sbjct: 83 NDTEDVVG---KLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFGYKTGLISTV 139 Query: 144 NNHIGV-----------PLT----LARMPVD-VDFGIFE-----LGMSHLGEIRFLTHLV 182 N+I P+T L RM + + E + +G ++F Sbjct: 140 CNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG--- 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + T + HL +E AK F+ L KT N DD + KAK Sbjct: 197 ----GIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLDDKNGLVMTQNTKAK 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H ++++ +DF+ + + E +++ ++EV IG A N+L Sbjct: 253 VHTYSLRSL--------SDFKGKVLEDGFEGMLLDIN----NVEVNVQFIGRFNASNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + ALS P GR R +G+ ++D Y P +++ ++ Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSP--KGYTAIVD--YAHTPDALENVLN 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+G I V+G Sbjct: 357 AIHEVL-NGKGNVITVVG 373 >gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus thuringiensis str. Al Hakam] gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus thuringiensis str. Al Hakam] Length = 258 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS++I F I DGH+++ ++ GA VAS+ S Sbjct: 39 IHGVRIDSKNIKEGNVFVPIIRVK-DGHEYVKESMDNGA---------VASLWKKSYGTP 88 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VDD L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 89 PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 148 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 149 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 182 >gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 455 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 112/467 (23%), Positives = 202/467 (43%), Gaps = 26/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++L I+G I + ++ +I + +F ++ D + F K Sbjct: 5 NLKEMLSIIEGKIIRGTDELLIDHAAIVPHKLKDNSLYFNMQDDPVDFNSF------KNC 58 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V+ N++ ++ + V V+DV A + R ++A+TG+ GKTTTKEM Sbjct: 59 AMVI-NSEHY-NVENSKWTVVAVEDVEKAFWRFVKYYRNLFNIPVVAVTGTCGKTTTKEM 116 Query: 126 LTIALS---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + LS TY I + H+ L + + +FE +++ ++ Sbjct: 117 IKHILSLHFKTAATYKSINGWRMHLPYLLEIDET---TEAAVFETAVAYPEDLIESCRYF 173 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I +IT I HLS S + +AKAE+ EGL GT+ LN DD + + + Sbjct: 174 KPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGLGYRGTLILNADDKNISRIDLQPYKG 233 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I IY FG SK + F+ + + ++ + ++ G G H N L + Sbjct: 234 RI--IY-FGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAIAC 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + A L+ + E R + +N T+ID+++++NP SM+AA+ L Sbjct: 291 THVLGLGIKEAALRLASYKHLE-RHLQVVPGVNGS--TIIDDTWSSNPTSMQAALKTLQN 347 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPR- 420 +S G R+ A+LGDM + + H ++ + + + G + + AL + Sbjct: 348 LS--GNKRKAAILGDMFYLYSWEKELHREIGNLAVEIGLDILLTVGDAASEIARGALEKG 405 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S ++ D + I L D +V+VK S F L+N ++ Sbjct: 406 MNSENIFICADADEAYQVICPLLDDNTIVLVKKSMKVSFNNLVNKIM 452 >gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] Length = 243 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 17/154 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS++I F I DGHD++ A+ GA VAS+ S Sbjct: 24 IHGVCIDSKNIKEGNLFVPIIRVK-DGHDYVKEAMDNGA---------VASLWKKSYGTP 73 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VD+ L AL +LA R +I ITGS GKTT K+++ LSS + + Sbjct: 74 PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 134 KGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 167 >gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC 43243] gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC 43243] Length = 526 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 24/287 (8%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 +I +TGS GKT+ K L L S+N +GV T+ + + I E+G Sbjct: 184 VIGVTGSYGKTSVKFYLQTLLQEKYNVLVTPESFNTPMGVVRTIRGSLRSTHEIFICEMG 243 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+G+I+ + +V P +IT+I P HL F +E I + K E+ + L G +FLN D Sbjct: 244 ARHVGDIKEICDIVHPDYGIITSIGPQHLETFFNMENIKNTKFELADALPDDGILFLNGD 303 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHH 286 + + + KAK + ++ F + + Q + M G + Sbjct: 304 NEYIQ-DKAKDYK---NKVFYFAQGSGNGYCASDIAVSQLGTEFTMTAP-DGTTENFQMR 358 Query: 287 GIGYHMAQNM---LMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLI 342 IG H N+ + + I +D+ ++ + V H + R G T+I Sbjct: 359 LIGAHNVINVAGAIAAANTLGIPLSDLKIPVRRIQPVPHRMQMR--------EHGQVTII 410 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 D++YN+NP KAA+ L+ +G RI + M E+G+ + ++ Sbjct: 411 DDAYNSNPVGSKAAVETLAMF----DGIRILITPGMVELGDKEKEYN 453 >gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM 22836] Length = 823 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 118/448 (26%), Positives = 188/448 (41%), Gaps = 34/448 (7%) Query: 33 DSRSIA-PQEA-FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF-GVD 89 DSR + P E FFA+K + DGH +I + G VV +D+ F V Sbjct: 30 DSRQVFFPDETLFFALKTKNNDGHRYISELYELGVRNFVV-SDLQPEWEEYEDANFLVVV 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L AL +LA R + +I ITGS GKT KE L L SYN+ IGV Sbjct: 89 HTLFALQRLAAYHRNQFNVPVIGITGSNGKTVVKEWLYQVLHHDFNITHSPRSYNSQIGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ +M G+FE G+S E+ L ++ P I + T I AH F S Sbjct: 149 PLSVWQMNSHTQLGVFEAGVSQPEEMAKLEAIINPTIGIFTNIGQAHQEGFK------SM 202 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K + E LE +F+N D ++ + + L + + S RK S Sbjct: 203 KQKCLEKLE----LFINCD----VIICEEENELVDECMEIACLSHKRLTWSRKGSNKSPL 254 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 M+V+ G S + + +G MA + + + + A+ + P +R Sbjct: 255 HIMKVEKLGNSTTIHYSILG--MASQFTIPFADNAAIENAIQVLATAIYLHLPLPDINQR 312 Query: 330 --------YRCALNQGFFT--LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R + QG LI+++YN++ S+ A+ L+Q + + R++ ++ D+ Sbjct: 313 MADLEPVAMRLDVRQGKNNTILINDTYNSDINSLGIALDFLAQRATDSQKRKVLIISDIP 372 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 + G + + + LA L L V + G + KD ++ T D + I Sbjct: 373 QSGLIPKELYY-LASNLVLNKKIDVLIGIGKEISTYKDLFKNDEMHFFNTTNDFIHSNIW 431 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S D +++K + S F IN LLE Sbjct: 432 SDFHDM-FILLKGARSFSF-ESINKLLE 457 >gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485] gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485] Length = 811 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 106/448 (23%), Positives = 184/448 (41%), Gaps = 58/448 (12%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S DSR AP E F AI+ DGHD+I A+ GA V+ A+ + V D Sbjct: 28 SYDSRLTAPGECFIAIRTARADGHDYIPAALAAGARGVLCRRPPHAADNAT---VIVCSD 84 Query: 91 VLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L + A + RLR+ T++A+TG +GKT + + L+ + T+ ++N+ +G+ Sbjct: 85 PQTVLLRWA-SNRLRALHPTVVAVTGGIGKTLARRAIAAVLTQLAPTFQSRRNFNSLLGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH---LSNFSGIEEI 206 P+ LAR+ + + E HL L PH+AVIT A L G+ + Sbjct: 144 PIALARLRAHDRYAVLEFAGEHLSP---LVAAFPPHLAVITPGADPQTVTLLQQHGVRVL 200 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 ++A A+ + G + D F G+ I ++ +L + Sbjct: 201 SAAAADCY---TIAGEFAIRATDISF-------RRDGVTFI-----ARGPGLELPIFTPL 245 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + L ++ G+ YHM+ + +AL+ P GR Sbjct: 246 LGPPGVSAALAAIAV-----GLSYHMSPEPIQ----------------QALTRLEPPAGR 284 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + R + +ID+S+NA +M AA+ L+ + RRIAVLG E+ + Sbjct: 285 LRPLR---GKNGEMIIDDSFNATLPAMVAALQTLAALPAQ---RRIAVLGTPAELPAIDP 338 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIHVHYSETMDGLFLFIQSSLVD 443 + + + + ++ L G + A + +I +H +T + + S Sbjct: 339 TPMLSDLGGQAARSADYLVLKGTGAATMVHAARLVKPTIPIHVVDTNTAAQMSLPSDRGA 398 Query: 444 GDVVVVKSSNSCGFYRLINLLL--EEFP 469 GD+V+V +++ LL +E P Sbjct: 399 GDLVLVSGGAGERLEQVVAPLLADDELP 426 >gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CNEVA-9066] gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. A1055] gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Kruger B] Length = 243 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 24 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 79 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167 >gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Western North America USA6153] gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Australia 94] gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] Length = 243 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 24 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 79 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIVEGILRSTYRVHKTKGNFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167 >gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CDC 684] gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CDC 684] Length = 246 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 27 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 82 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAKDIVEGILRSTYRVHKTKGNFN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 142 SQIGLPLTILEMKRDTEILILEMGMSEKG 170 >gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684] gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684] Length = 552 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 131/316 (41%), Gaps = 34/316 (10%) Query: 103 RLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV--PLTLARMPVD 159 RLR + ++ ITGS GKTTTK +T L + Y S+N+ +GV + P Sbjct: 182 RLRDVRPLVVGITGSYGKTTTKACVTEVLELLGPAYPTPASFNSTLGVVRAINEGLQPQH 241 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F + E+G G+++ L LV P I V+T I PAHL F ++ AK E+ + L Sbjct: 242 QSF-VVEMGAYRRGDVQELCDLVHPRIGVLTAIGPAHLERFGSLDVTEQAKGELADALPA 300 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--------------FQL--RKW 263 G +F+ D L A++ + +++ +AD F L R Sbjct: 301 EG-LFVTRADDERTLRVARTRSAARALLFAPAPHPDADVWAEDVRLENGRTHFTLVARAS 359 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYH--MAQNMLMTLGIV-SILTADVDTAIKALSVF 320 + +V +G H +GI + ADV +AL Sbjct: 360 GDGGASGDGGAAAGEQRADVRARLLGDHNVANLLAAAAVGIGHGLALADV---ARALGRV 416 Query: 321 HPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 P + R +N+ +ID+SYNANP AA+ VL H RR+ V M Sbjct: 417 TPPD---HRLAPIVNRAAGIVVIDDSYNANPEGAAAALGVLRD---HPATRRLLVTPGMV 470 Query: 380 EMGELSQSFHIDLAEV 395 E+G Q + L E+ Sbjct: 471 ELGAREQEENRRLGEL 486 >gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 252 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 33 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 87 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 88 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIVEGILRSTYRVHKTKGNFN 147 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 148 SQIGLPLTILEMKRDTEILILEMGMSEKG 176 >gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Vollum] Length = 243 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 24 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 79 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTAKDIVEGILRSTYRVHKTKGNFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 139 SQIGLPLTILEMKRDTEILILEMGMSEKG 167 >gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] Length = 513 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 109/430 (25%), Positives = 170/430 (39%), Gaps = 57/430 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F DL+QA+ S G V + DSR P F A++G + DGH F+ A +GA Sbjct: 6 FSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAV 65 Query: 67 LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 +V + D+ ++P + AL +A R II ITG+ GKTT Sbjct: 66 AALVESWEPDLANYPAYAAVP-----NTRAALPLVAATFFGRPAEALGIIGITGTDGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------VPLTLARM-PVDVDFG 163 T ++ L S IG+ +G V LA+M VD+ Sbjct: 121 TSYLVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWA 180 Query: 164 IFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + E L + L E F + V+T I HL IEE AKA + E + Sbjct: 181 VLEATSHGLALHRLDECAF-------DVGVVTNITHEHLEFHGTIEEYRRAKARLLERVA 233 Query: 219 KTGT------IFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSW 271 G + LN DD E +A + A G + F K AD Q + ++ + Sbjct: 234 GRGPRPYPGGVVLNRDD---EGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTS 290 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + S+ V + IG + N L G+ +L + + L GR + R Sbjct: 291 FRLTTPRGSVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMR--R 348 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 L Q + ++D Y P S++ ++ +L + P GR IAV G E + Sbjct: 349 VDLGQPYTVIVD--YAHTPDSLEKSLRLLRSLVP---GRVIAVFGSAGERDRAKRPLQGA 403 Query: 392 LAEVLSLYNI 401 ++ L+ +++ Sbjct: 404 VSARLADFSV 413 >gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis CI] gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus biovar anthracis str. CI] Length = 250 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 ++G+ IDS++I F I DGH+++ A+ GA + + S GS IP Sbjct: 31 IHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGA----IASLWKKSYGSPPKGIP 85 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + VDD L AL +LA R +I ITGS GKTT K+++ L S + + G++N Sbjct: 86 IIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKGNFN 145 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + IG+PLT+ M D + I E+GMS G Sbjct: 146 SQIGLPLTILEMKRDTEILILEMGMSEKG 174 >gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia chondrophila WSU 86-1044] gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia chondrophila WSU 86-1044] Length = 532 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 11/283 (3%) Query: 110 IIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFEL 167 +I ITGS GKT+TK+ L L ++ T+ N +G+ ++ R+ + + E+ Sbjct: 180 VIGITGSYGKTSTKDALGQLLQITLGSTFWPSKGINTDMGITRSIRERLEPLTKYAVIEM 239 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G IR L L PH +IT I AHL F + I AK+E+ + + + G + N Sbjct: 240 AAYGTGSIRRLCGLTPPHAGIITGIGLAHLDRFGDQKTIYQAKSELAQAIPEEGILICNG 299 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D+ + A+ +Y SK + D + + E + ++ +GKS E + Sbjct: 300 DNPGTRQISAEFKK-QTTLLYGLDNSKRDLDCWITPLELTKEGTRFRIEWEGKSFEGITS 358 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N + L A D A ALS P R + R T I ++Y Sbjct: 359 LYGNTSLSNCAGAFAMACALGAQPDFAAAALSTLIPVNNRLQISRDEER----TYIHDAY 414 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+NP +A+ VL Q+ +RI + M E+ E + + H Sbjct: 415 NSNPEGFLSALHVLHQMPAR---KRILMTPGMIELAEQNLNMH 454 >gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] Length = 501 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 161/389 (41%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 I++DSR + + F A+KG DG FI A+++GAGLV+ D + Sbjct: 24 ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI------A 129 + S V V ++ L+++A A A K T++ +TG+ GKTT+ ++L Sbjct: 84 LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 130 LSSIKKT-----YACIGSYNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLT 179 S++ T Y I N G + + R + + DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PNAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L TL + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTTLASLLVLGHDLQKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] Length = 488 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 155/363 (42%), Gaps = 26/363 (7%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 +DSR I + FFA+KG H DG FI A GA VV IG S+PV +D++ Sbjct: 23 LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNL 79 Query: 92 LGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G 148 AL +A A S A + IA+TG+ GKTTT + ++ + A IG+ + G Sbjct: 80 YRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNG 139 Query: 149 V-----------PLTL-ARMPVDVDFGI--FELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 + PLTL A+ + G F + S +G + AV T + Sbjct: 140 IVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTR 199 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKS 253 HL +E AK +F + + +++K A+ I T+ + G Sbjct: 200 DHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKG-D 258 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + A + E EV+ +G + V H +G +N L T+G + + +++T Sbjct: 259 QPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETV 318 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K ++ P GR + R + G +D Y+ P ++ AI L ++ GR Sbjct: 319 LKEVAKLMPPAGRMQIVR--DDHGPIFAVD--YSHTPDAVTQAIKALEGLAEARGGRIWI 374 Query: 374 VLG 376 V+G Sbjct: 375 VVG 377 >gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus flavefaciens FD-1] Length = 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 21/290 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGM 169 + ITGS GKT+ K L L+S T S+N +GV +T+ + ++ I E+G Sbjct: 193 VGITGSYGKTSMKFYLDELLNSKYNTLKTPESFNTPMGVTITIRNYLKPTHEYFICEMGA 252 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYD 228 + EI+ L + PH +IT++ P HL F IE + + K E+ + ++ K G I+ N D Sbjct: 253 RRVHEIKELCDIAEPHDGIITSVGPQHLETFGSIENVLNTKFELADCVKAKGGKIYFNGD 312 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287 + EL++ K+ +Y G + D++ S + V G+S Sbjct: 313 N---ELIRKKAPEYEGAILY--GLQEGNDYRATDISVSSRGTEFTVTAPGGESHRFSTKL 367 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCA-LNQGF-FTLIDE 344 +G H QN+L + T I + P K + +R L++G T ID+ Sbjct: 368 LGEHNVQNVLGAIAYAH------GTGIPLEKLTLPVKRIQAVPHRLQLLDKGNGLTFIDD 421 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 +YN+NP+ +AA++VL + RI V M E+G + + + + Sbjct: 422 AYNSNPSGCRAALAVLELF----DACRILVTPGMVELGAKQEELNFEFGQ 467 >gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinibacter ruber M8] gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinibacter ruber M8] Length = 543 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 13/306 (4%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164 S +++ ITGS GKT+TK ++ L YA SYN +G+ L + + + + Sbjct: 192 SDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLV 251 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E G+ + G++ L + P +V+TTI AHL + IA+ K + E G Sbjct: 252 LEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVERTAPDGPAV 311 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEV 283 LN DD + A+ A + I + G +AD + ++ G ++ Sbjct: 312 LNVDDERVAAM-AERAAGPVWRISTEGH-PDADITASDIRYDTGGTAFNVTDDTGTTVTF 369 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLI 342 +G H N+L+ + + + + A+ P E +R L ++G T+I Sbjct: 370 ETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIE-----HRLQLRSRGDVTII 424 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++N+NP + A+ +LS++ G+R+ V M E+G+ + + D VL+ +++ Sbjct: 425 DDAFNSNPVGARNAVEILSEMD---GGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLD 481 Query: 403 HVWLSG 408 V L G Sbjct: 482 LVVLVG 487 >gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] Length = 497 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 151/366 (41%), Gaps = 46/366 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGSLSI 83 + DSR + P + F A +G + DG FI A+ GA V+ N + ++ +L++ Sbjct: 26 VETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPADGFNWNPAWNVPNLAV 85 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P + A + +R T+I ITG+ GKT+ L A S + A IG+ Sbjct: 86 PQLRARAGIVASHAYGEPSR---AMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIGTV 142 Query: 144 NNHIGVPLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVI 189 N LT PV V + E + +S G +F + V AV Sbjct: 143 GNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATAVF 202 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL +EE ++KA +F EGL +N DD+F L A +T+ Sbjct: 203 TNLTRDHLDYHGSMEEYGASKARLFHWEGLRHA---IINADDAFGRELAAGIDRQRTQTV 259 Query: 248 YSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++G +++N L + W EV+L+ + G A N+L L Sbjct: 260 -TYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLL-------GRFNAANLLACLA 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + A LS P GR +R L G L+ Y P +++ A++ L+ Sbjct: 312 TLCVNGVALKDAAAVLSRIQPARGRMQR----LGGGHEPLVVIDYAHTPDALEKALATLA 367 Query: 362 QISPHG 367 +I P G Sbjct: 368 EIRPAG 373 >gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] Length = 276 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%) Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I HL + I AK EIF+ L+ TG I LN DD + L + GI+ + Sbjct: 1 MITNIGLCHLEFLKSRDGILKAKTEIFDFLKPTGHIILNVDD---DKLVTVENVKGIQPM 57 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + ++KN + + + + + + V+ G+HM N L + + Sbjct: 58 FFGIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTYS 117 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ + P GR ++ G +T++D+ YNANP SMKA++ VL+ Sbjct: 118 LSLEEIKAGIESLQPVSGRFH----IIDTGKYTVVDDCYNANPVSMKASLDVLTD----A 169 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVLALKDALPRSIH 423 GR++A+LGDM E+G+ H ++ N+ + LS + A K A P Sbjct: 170 LGRKVAILGDMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKPI 229 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ +T + L + L GD +VK+S+ GF ++ L Sbjct: 230 FHF-KTKEELLQELPQILQKGDTALVKASHFMGFEDVVKEL 269 >gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] Length = 813 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/346 (24%), Positives = 145/346 (41%), Gaps = 24/346 (6%) Query: 25 GFVNGISIDSRSIAPQEAFFA-IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++ I ID+R I A FA +KG DGH F+ + GA +V S+ Sbjct: 23 ALIDQIVIDTRRIYASNALFAALKGQRQDGHSFVSGS---GAKFALVEKHWEGPADGPSL 79 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 VDD L A ++A + R + + +IA+ GS GKT K++L LSS + S+ Sbjct: 80 --LKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDLLRHLLSSSFTVASSPESF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ +GVPL+L + I E G SH GE+ L ++RP ++T + HL Sbjct: 138 NSQVGVPLSLLGAAKAHEQVIIEAGFSHPGEMARLCKIIRPSHIILTHVGNKHLHTIGSK 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+IA F D+ + LL + Y + + + + Sbjct: 198 EQIAQEMCH-----------FSLSSDASWTLLPKDPILSPLPKPY-YWDTPQPNLPHASF 245 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTADVDTAIKALSVFHP 322 + S+ + VQ + +G +++ + L +L + AL + P Sbjct: 246 HENSKA--ITVQFPKGDAHTILRPLGMSYILDLINIGLKAAYLLGVPEKQIVDALKTYQP 303 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + ++ +Q T I+E+Y +P S+ A+ SP G+ Sbjct: 304 EPMSTEIWK---SQNGATFINETYCEDPQSLDCALRRFDFHSPKGK 346 >gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] Length = 488 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 154/363 (42%), Gaps = 26/363 (7%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 +DSR I + FFA+KG H DG FI A GA VV IG S+PV +D++ Sbjct: 23 LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNL 79 Query: 92 LGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G 148 AL +A A S A + IA+TG+ GKTTT + ++ + A IG+ + G Sbjct: 80 YRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNG 139 Query: 149 V-----------PLTL-ARMPVDVDFGI--FELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 + PLTL A+ + G F + S +G + AV T + Sbjct: 140 IVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTR 199 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKS 253 HL +E AK +F + + +++K A+ I T+ + G Sbjct: 200 DHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKG-D 258 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + A + E EV+ +G + V H +G +N L T+G + + +++T Sbjct: 259 QPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETV 318 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K + P GR + R + G +D Y+ P ++ AI L ++ GR Sbjct: 319 LKEAAKLMPPAGRMQIVR--DDHGPIFAVD--YSHTPDAVTQAIKALEGLAEARGGRIWI 374 Query: 374 VLG 376 V+G Sbjct: 375 VVG 377 >gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 487 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 99/383 (25%), Positives = 163/383 (42%), Gaps = 37/383 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + I++DSRS++P F A +G +DGHDF+ A+ +GA ++V ++ +L Sbjct: 20 PSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEV-----ALD 74 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IP V V A+ L R + ++ ITG+ GKTTT + LS + I Sbjct: 75 IPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLAGRRTGLI 134 Query: 141 GSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRP 184 G+ G P L R VD VD + E+ + + R R Sbjct: 135 GTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRIDGTSFR- 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I V T ++P HL IE+ +AKA++F E+T + D + L + + Sbjct: 194 -IGVFTNLSPEHLDYHGTIEQYYAAKAQLFL-PERTKQAVIGTDTEWGVRLATQVRIPAV 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIV 303 ++G + +D+++ + + V + G+ + I G H A N + + Sbjct: 252 ----TYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAVAVA 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + DT + L+ H GR +R Q F ++D Y P S++A I+ + Sbjct: 308 EALGIEGDTIERGLAECHQVAGRFQRIDA--GQPFTVVVD--YAHTPDSLRALIATARAL 363 Query: 364 SPHGEGRRIAVLGDMCEMGELSQ 386 SP +GR I V G L + Sbjct: 364 SP--KGRVILVAGARGRRDRLKR 384 >gi|297521770|ref|ZP_06940156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli OP50] Length = 127 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + L Sbjct: 2 KEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLT 61 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP A++ +A AHL F + +A AK EIF GL + G +N D++ + L +S + Sbjct: 62 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNN--DWLNWQS-VI 118 Query: 243 GIKTIYSF 250 G + ++ F Sbjct: 119 GSRKVWRF 126 >gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 497 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 159/388 (40%), Gaps = 39/388 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + +SR + P F ++G +D H ++GA ++ + L IP+ Sbjct: 27 VNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPELQERGAAALIAEKKIDVD---LDIPII 83 Query: 87 GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V A L + K T I +TG+ GKTT ++ L + ++ A +G+ Sbjct: 84 YVKSSRLAEAHLYMEINDHPYKKLTTIGVTGTNGKTTVTTLINHILETFQRKSALVGTVK 143 Query: 145 NHIGV------------PLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 N IG P TLA +M V+ + F + +S G +R +AV+ Sbjct: 144 NVIGDYVSTNPKNTTPGPATLAKYMKMAVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVL 203 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL + E+ K IF L+ G +N D+ +K L I + Sbjct: 204 TNVTRDHLDFHASFEDYYRTKLRIFNLLKPVGKAVVNSDNVNIGDIK-----LPRDKIIT 258 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +G +DF++ + + V+ G +V +G H A N+ T+ + L Sbjct: 259 YGFGNESDFRMENLEISRTGMYFTVETPFGSKHKVYTRLVGEHNAYNVTATIATMESLNY 318 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D + ++A+S F GR + A GF L+D + P +++ + ++S E Sbjct: 319 DTEHILEAISTFSGVPGRFEFVEEATKYGFDVLVD--FAHTPDALEKLLKTAKKLS---E 373 Query: 369 GRRIAVLGDMCE--------MGELSQSF 388 GR I V G + MGE++ F Sbjct: 374 GRIIIVFGAGGDADKGKRPLMGEIASRF 401 >gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] Length = 823 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 3/193 (1%) Query: 27 VNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 ++ I+IDSR ++ E F ++ G G DFI + G +V+ L+ Sbjct: 27 ISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIPALIDLGVRNFIVHKGNSLKRELLAKA 86 Query: 85 VFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F VDD AL ++A R + +++ITGS GKT KE L LS + SY Sbjct: 87 NFVLVDDTRKALQEIARYQRSYFEKPVVSITGSNGKTIVKEWLGQVLSQAYQVAKSPKSY 146 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ +GVPL++ + I E G+S GE+ L +++P++ + T I AH FS Sbjct: 147 NSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAALERIIQPNLGIFTNIGSAHKEGFSSQ 206 Query: 204 EEIASAKAEIFEG 216 E K +F+G Sbjct: 207 ESKILEKLSLFKG 219 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID++YN + A +K A+ L+ P + R+I +L D+ + G +Q + ++AE++ ++ Sbjct: 336 LIDDTYNNDLAGLKVALDFLNLQRP--KKRKILILSDLLQQGTAAQ-LYSEVAEMVKSHH 392 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + G H+ L+ P+ + YS+T + L + D++++ + GF R+ Sbjct: 393 LDQIIGVGQHIFQLESFFPKQF-IGYSDT-EKLLDELNPEEFSNDLILITGARPFGFERV 450 Query: 461 INLL 464 +N L Sbjct: 451 VNKL 454 >gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis] gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis] Length = 279 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 39/308 (12%) Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFL 225 +G +H EI FL + P IT AHL F GIE + K+E++ LEK TIF+ Sbjct: 1 MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD+ L K+ L YSF ++D ++ E + M V + ++++ Sbjct: 61 NLDDT---LQNEKTKKL---KRYSFSTQNSSDIKI----DTIEANPM-VIIGFNNLKIHS 109 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + IG + A N+ + I + +A+ + P R + + +G +I ++ Sbjct: 110 NLIGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQ----LITKGSNEIILDA 165 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YNANP+SM AAI+ Q+ + +++ +LGDM E+G+ S H + +L + Sbjct: 166 YNANPSSMLAAITNFIQLIT--DKKKVLILGDMFELGKESIEEHKKIVTLL-----AETK 218 Query: 406 LSGFHVLAL----KDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 L F + AL K P +IH H +S+ ++ + ++ +++++K S Sbjct: 219 LISFCIGALFFENKIDSP-TIHFHKDFESFSKELN------KDYSLENNLILIKGSRGMA 271 Query: 457 FYRLINLL 464 R+++LL Sbjct: 272 LERVLDLL 279 >gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] Length = 488 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 101/397 (25%), Positives = 168/397 (42%), Gaps = 44/397 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P FF I+G DGH ++ AV +GA ++V + D+ + I F V++ L Sbjct: 22 DSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDL--NYYHDKIIYFRVENTL 79 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEML--------------TIALSSIKKT 136 LN+++ +K II +TGS GKT M+ TI+L + Sbjct: 80 VELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYCSSGYIGTISLEYNGRK 139 Query: 137 YACIGSYNNHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 C + + + L M V ++ L + + I F +IAV+T Sbjct: 140 EECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGINF-------NIAVMT 192 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I HL E+ AK ++FE ++ TG LN DD F LK + I ++ Sbjct: 193 NIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG----RILTY 248 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G +D + + + S ++ +G + V I N+L G++ + D Sbjct: 249 GIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGVLIAMGCDD 308 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 I A+ P EGR + + Q F +ID Y + ++ +A + + G GR Sbjct: 309 KMVIDAVENVKPIEGRMELIQT--EQQFAVIID--YCQHISNYEAIFEYVDGVR-QGHGR 363 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 IAVLG G+ + +L ++ + Y + HV L+ Sbjct: 364 IIAVLG---APGKRNYKLRKELGQLANRY-LDHVILT 396 >gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus 03BB102] gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus 03BB102] Length = 255 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 20/157 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS++I F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI---ALSSIKKT 136 +P+ VDD L AL +LA R +I ITGS GKTT K++ I LSS + Sbjct: 83 PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIKDIIEGILSSTYRV 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 143 HKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 179 >gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 492 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 99/384 (25%), Positives = 158/384 (41%), Gaps = 64/384 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI DSR + P F AIKG DGHDFI ++K L+V + +F Sbjct: 26 VTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEKKPALIVAEEERPG--------IF 77 Query: 87 GVDDVLGALNKLAVAARLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 GV+ +L ++ A+A R+ K ++I +TG+ GKTT ++T L S Sbjct: 78 GVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTHLVTSLLESFGYKTGL 137 Query: 140 IGSYNNHIG---VPLT--------LARM-----PVDVDFGIFELGMSHLGEIRFLTHLVR 183 IG+ N IG +P+T L R+ +V E+ L + R L + Sbjct: 138 IGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQKRVLG--ID 195 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFE-LLKAKSH 240 V T + HL +E +AK E+F+ L + + +N DD + + +LK +H Sbjct: 196 FKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQRILKEVAH 255 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++G + AD + + + + + Q + V +G N+L + Sbjct: 256 PF-----VTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYNILAAV 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE--------SYNANPAS 352 G + L + +K L + +P GR F LIDE Y P Sbjct: 311 GTLLTLGFSLPDIVKNLPLLNPVPGR------------FELIDEGQDFAVIVDYAHTPDG 358 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ + I+P GR IAV G Sbjct: 359 LENILKSARAITP---GRVIAVFG 379 >gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] Length = 178 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F ++ QA++ + P + GI DSR I F ++G + DGH FI A+ G Sbjct: 22 FWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANGC 80 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 D+V + L PV V D L A+ +LA + + +IA+TGS GKTTTK++ Sbjct: 81 QAAFWGQDLVDAPQQL--PVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDL 138 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTL 153 + LS TY G+YNN IG+P T+ Sbjct: 139 IAAVLSEKFVTYKTQGNYNNQIGLPYTI 166 >gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] Length = 487 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 152/373 (40%), Gaps = 44/373 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+++DSR + F A+KG DGH FI A++KGA ++V+ + A + + Sbjct: 24 INGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIEKGASAILVSEPIPAETPT-DVTFV 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K+A + ++ +TG+ GKTT +L + + + Sbjct: 83 RVADTEDAIGKVATTFYGDPTQRLKLVGVTGTNGKTTIATVLYHLFTELGFKCGLCSTVC 142 Query: 145 NHIGV-----------PLTLARMPVDV-----DFGIFELG-----MSHLGEIRFLTHLVR 183 N+IG P+TL ++ ++ ++ E +G + F Sbjct: 143 NYIGTHAVPTEHTTPDPVTLNKLLGEMADEGCEYAFMECSSHAIHQKRIGGLDFAG---- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A+ T + HL E AK F+GL K N DD ++ + A Sbjct: 199 ---ALFTNLTRDHLDYHKTFENYRDAKKAFFDGLSKQAFAITNADDKNGPIMVQNTKA-- 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I ++ AD++ + ++ E +E+ EV +G N+L G Sbjct: 254 --RIKTYSTRAAADYKGKILEESLEGMLLEIN----GREVSVRFVGRFNVSNLLAVYGAA 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D ++ LS HP GR + R +G +ID Y P ++ +S + +I Sbjct: 308 IELGVSPDETLRVLSSLHPVNGRFEAIRSP--KGVSAIID--YAHTPDALANVLSSIDEI 363 Query: 364 SPHGEGRRIAVLG 376 HG+ + I V G Sbjct: 364 V-HGKAQVITVCG 375 >gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio proteoclasticus B316] gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio proteoclasticus B316] Length = 539 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 34/296 (11%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFEL 167 II ITGS GKT+ K LT LS + SYN +G+ T+ MP F + E+ Sbjct: 188 IIGITGSFGKTSVKYYLTTLLSEGYRVLMTPESYNTPMGIVRTIREHLMPTHEIF-VCEM 246 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---- 223 G HL +I+ +T +V P ++T+I HL F ++ I S K E+ + +++ Sbjct: 247 GARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKMKADGKK 306 Query: 224 -----FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQ 277 F+N D+ E+++A + + ++G S+ D++ K S S+ Sbjct: 307 DAHLKFVNGDN---EIIRAN---MKYEDAITYGLSEGCDYRATDIKVSGSGTSFTVTAPN 360 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVS---ILTADVDTAIKAL-SVFHPKEGRGKRYRCA 333 G++ E +G H +N++ + + I + A++ L SV H E Sbjct: 361 GETCEFATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLE--------L 412 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + G +++D++YN+NP K A+ L + +I V M E+GE ++ Sbjct: 413 IKHGPVSILDDAYNSNPNGAKVALETLDLFE---DQVKILVTPGMVELGEKEDEYN 465 >gi|309806975|ref|ZP_07700957.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 03V1-b] gi|308166595|gb|EFO68792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 03V1-b] Length = 270 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 18/269 (6%) Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRK 262 ++IA AK EI + L++ G N D+ LL+A++ L ++ + F N+ + Sbjct: 13 DKIADAKMEITDFLKEDGKFIFNGDEP---LLQARAQTLNQLQATFGF----NSTDTIYA 65 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFH 321 S + ++ IG H N L + + DV+ A +AL+ F Sbjct: 66 TNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVEIA-QALANFV 124 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + L + ++ + YN+NP + KA ++ SQ+ GRRIAVLGDM E+ Sbjct: 125 PTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLEL 181 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLF 436 G S H LAEVL+ I ++L G + L +AL ++H + + MD + Sbjct: 182 GAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHMDRMIND 241 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ + D+V++K S+ +++ LL Sbjct: 242 LREDIKPHDIVMLKGSHGMHLEKVLERLL 270 >gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] Length = 526 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 12/276 (4%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 +I ITGS GKT+ K + LS+ S+N +GV T+ ++ + I E+G Sbjct: 181 VIGITGSFGKTSVKHFMHAVLSAKFNVLMTPESFNTKLGVTRTIREKLKPYHEVFIAEMG 240 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 G++ + LV V+T I HL F ++ I K EI E L G LN D Sbjct: 241 AKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIETLPDNGVGVLNKD 300 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287 D E + + + IY + + D + + S+ V L+ G++ Sbjct: 301 D---ENIMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSSKGMDFTVVLKNGETQTFRTKL 357 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G H N+L + I L + +K + R + R G T+ID+S+N Sbjct: 358 LGKHNVYNILAAIAIGLQLGMKLSEMVKPIRSLDAVPHRLELKRST---GNITIIDDSFN 414 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +NP K A+ VL + EG R+ V M E+GE Sbjct: 415 SNPVGSKMAVDVLGSM----EGYRMLVTPGMIELGE 446 >gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 488 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 105/395 (26%), Positives = 175/395 (44%), Gaps = 40/395 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P FF I+G DGH ++ AV +GA ++V + ++ + I F V++ L Sbjct: 22 DSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNL--NYYHDKIIYFRVENTL 79 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNNH 146 LN+++ +K II +TGS GKT M+ A++ + IG+ YN Sbjct: 80 VELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYCSS-GYIGTISLEYNGR 138 Query: 147 -----IGVP--LTLARMPVDVDF-GIFELGM---SH---LGEIRFLTHLVRPHIAVITTI 192 P L L R +++ G+ + M SH LG + + +IAV+T I Sbjct: 139 KEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGINF----NIAVMTNI 194 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL E+ AK ++FE ++ TG LN DD F LK + I ++G Sbjct: 195 GAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG----RILTYGI 250 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 +D + + + S ++ +G + V I N+L G++ + D Sbjct: 251 EIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGVLIAMGCDDKM 310 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 I A+ P EGR + + Q F +ID Y + ++ +A + + G GR I Sbjct: 311 VIDAVENVKPIEGRMELIQTE--QQFAVIID--YCQHISNYEAIFEYVDGVR-QGHGRII 365 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 AVLG G+ + +L ++ + Y + HV L+ Sbjct: 366 AVLG---APGKRNYKLRKELGQLANRY-LDHVILT 396 >gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] Length = 483 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 39/393 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L DLL+ IQ I + G++IDSR I F A++G DGH +I A++K Sbjct: 2 LMKLSDLLKTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIEK 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GA + V+ D+ S I V D A+ K+A A SK ++ +TG+ GKTT Sbjct: 62 GA-IAVLCEDLPKEQKS-GITYVQVKDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIF 165 +L I + N+I P+TL R+ ++ + Sbjct: 120 IATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFM 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + + R ++ + T + HL +E AK + F+ + K+ Sbjct: 180 EVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLT 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD ++ + + +Y++ +DF+ + E + + L + E+ Sbjct: 238 NLDDKNGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAV 289 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG A N+L G +L + + ALS HP GR R +GF ++D + Sbjct: 290 RFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGFTAIVDYA 347 Query: 346 YNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 + + A ++VL+ I G+G+ I V+G Sbjct: 348 HTPD-----ALVNVLNAIHGVLEGKGKVITVVG 375 >gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 487 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 159/379 (41%), Gaps = 46/379 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+ DSR I P + +F + G +DGH F+ V+KGA +V D+ Sbjct: 11 PDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKDI--ETMHKG 68 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V++V LN +A + T+ +TG+ GK+T ++ S K I Sbjct: 69 VAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIKDVYSHFKPC-GYI 127 Query: 141 G----SYNNHIGVPLTLA---------RMPVDVDFGI--FELGMSHLGEIRFLTHLVRPH 185 G SY + + +P +L M VD+G+ L +S G V Sbjct: 128 GTISISYGD-VTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGLEMGRVQSVDFD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV T + HL +E AK ++F L+ G +N DD F AK G K Sbjct: 187 VAVFTNLTYDHLDFHGTLENYFEAKHKLFLQLKSDGVAVINVDDPF-----AKRMVAGCK 241 Query: 246 T-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I S+G + +AD++ + + G + +++HHG Y + N++ I + Sbjct: 242 AHIVSYGVTADADYR---------GDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYN 292 Query: 305 ILTA-----DVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +L A + A+K + + + + G+ R Q F ++D + P M+ Sbjct: 293 LLGAIAAMCESGVALKEIVPYLSELTQVDGRMERIDEGQAFNVIVD--FAHTPDGMEKVF 350 Query: 358 SVLSQISPHGEGRRIAVLG 376 + I+P G IAV G Sbjct: 351 EFANSITPDGNA-IIAVFG 368 >gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella kingae ATCC 23330] Length = 491 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 156/367 (42%), Gaps = 59/367 (16%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------------M 74 DSR I P + F A +G + DG ++I A++KGA V + D + Sbjct: 29 DSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPIAEL 88 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 G L+ V+G +V G+LN II +TG+ GKT+ + L A+ ++ Sbjct: 89 RQRAGILANSVYG--NVSGSLN-------------IIGVTGTNGKTSITQWLAQAIDILE 133 Query: 135 KTYAC--IGSYNNHIGVPLT----LARMPVDVDFGIFEL---GMSHL-------GEIRFL 178 AC IG+ N L PV V + + G SH+ G +F Sbjct: 134 NKSACAIIGTVGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFR 193 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLK 236 + V A+ T + HL + +EE AKA +F +GL+ +N DD F L Sbjct: 194 VNGVPFQTAIFTNLTRDHLDYHNSMEEYGEAKARLFHWQGLQNA---IINSDDEFGAKLV 250 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ + +YS+G +++AD ++ ++ ++ + +Q + V +G AQN Sbjct: 251 AELKQSSLH-VYSYGFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNF 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 LG + A+KAL+ G R C + + L+ Y P +++ A Sbjct: 310 AAALGALCAEGYAFQAALKALAQIRAATG---RMDCIIREN-KPLVVVDYAHTPDALEKA 365 Query: 357 ISVLSQI 363 +S L +I Sbjct: 366 LSTLREI 372 >gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 481 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 32/376 (8%) Query: 22 VPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V Q F V GI+ D+R + P + F IKG DGH F A + GA +V ++ + Sbjct: 9 VEQDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCEYEL----EN 64 Query: 81 LSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++IP V D L +LA + + K + +TG+ GKTTT +L L+ + Sbjct: 65 IAIPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEGHVG 124 Query: 139 CIGS----YNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPH------ 185 IG+ Y NH P P+ + + E G+ + I +H + H Sbjct: 125 YIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVA-IEVSSHALELHRVDYCQ 183 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +A+ T + P HL +++ AK ++FE L G +N DD + E L + Sbjct: 184 FKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNRLKE-S 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +Y++G +ADF+ S + ++ EV +G N L + Sbjct: 243 QTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMASA 302 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLS 361 + ++ I + P +GR + +N+G F ++D Y P ++ + ++ Sbjct: 303 YSASMPMEQIIALIKTLSPVDGRME----IINEGQDFTVIVD--YAHTPDGVEKVLEFVT 356 Query: 362 QISPHGEGRRIAVLGD 377 I +G I GD Sbjct: 357 GIKQNGVKVVIGCPGD 372 >gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 270 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 44/292 (15%) Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I +HL +EIA AK EI +GL + G N D+ K+ ++ KT Sbjct: 1 MITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEPLLSR-NNKTSSVNCKT- 58 Query: 248 YSFGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY----HMAQNMLM 298 FG+ D QL ++ G ++ H I Y H N+ Sbjct: 59 --FGEKDTNDLFPTNVQLDEY--------------GVHFKLNHTKIQYDVPLHGKHNIFN 102 Query: 299 TL-GIV-----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 T+ GI + T + A++ +++ R++ + FT+I++++NA+P+S Sbjct: 103 TIVGIAVGQFYKVPTEKIQEALQQINITQM------RFQFLTAKIGFTIINDAWNASPSS 156 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 MKAAI L +++ + ++I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G Sbjct: 157 MKAAIETLQKLNAYK--KKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAK 214 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLI 461 + + ++ H+ ++ D + L DVV++K S +++ Sbjct: 215 FVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIV 266 >gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] Length = 484 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 149/374 (39%), Gaps = 47/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI IDSR + P F AIKG DGH +I A++ GA +V + + + Sbjct: 23 ITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAIENGACGIVC--EQLPEEIRPEVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + D GA+ KLA A SK +I +TG+ GKTT +L + + Sbjct: 81 RLADTEGAVGKLATAFYGDPTSKLDLIGVTGTNGKTTIATLLYKMFRQFGYKVGLLSTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ + E+ + + R +R + Sbjct: 141 NYIDDEAIPADHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAIAQRRIAG--LRFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGI 244 T I HL E AK F+ L K+ N DD +++ KA+ A + Sbjct: 199 FTNITRDHLDYHKTFENYLKAKKAFFDNLPKSAFALTNLDDKNGKVMVQNTKARIAAYSL 258 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ F + E + + L + EV IG A N+L G Sbjct: 259 RTLCDF------------KGKVLEDGFDGMLLDINNREVNVRFIGRFNASNLLAVYGAAC 306 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L + + ALS P GR R +G+ ++D ++ + A ++VL+ I Sbjct: 307 LLGKPSEEVLIALSTLCPVAGRFDALRS--RRGYTAIVDYAHTPD-----ALVNVLNAIH 359 Query: 365 P--HGEGRRIAVLG 376 G+GR I V+G Sbjct: 360 EVLRGQGRVITVVG 373 >gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 500 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 154/382 (40%), Gaps = 47/382 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 +N IS DSR I + F A+ G DGH F+ A+ GA VVVN +D+ I Sbjct: 22 INNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVAVVVNSSSDVPCLAKYPDIQ 81 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------TIALSSI 133 V V+D AL ++A R ++ ITG+ GKTTT +L L S Sbjct: 82 VIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTTATLLYKLFLGMGFGAGLIST 141 Query: 134 KKTYACIGSYNNHIGVP--LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186 K Y C+ P L R+ D+ D+ E+ + R R Sbjct: 142 IKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFMEVSSHATVQQRIAGLTFRG-- 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGI 244 AV T + HL ++ AK F+ L +T N DD F L K+ Sbjct: 200 AVFTNLTQDHLDYHKTMDNYRDAKKLFFDHLPQTAFALTNADDRNGNFMLQNTKAQR--- 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299 Y++ ADF+ + + E Q V +GK EV +G AQN+ Sbjct: 257 ---YTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPFVGSFNAQNLTAV 313 Query: 300 LGIVSILTA----DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 G ++L D T + LS P GR + R A G ++D Y P ++K Sbjct: 314 FGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA---GISAIVD--YAHTPDALKN 368 Query: 356 AISVLSQI-SPHGEGRRIAVLG 376 +S ++ + SP + R + V+G Sbjct: 369 VLSTINDVKSP--DSRVVTVVG 388 >gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] Length = 493 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 166/402 (41%), Gaps = 54/402 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q ++G +I I + G+ DSR I P + FFA KG DG FI A++KGA ++ Sbjct: 3 LSQLLRGMNISIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAAIL 62 Query: 70 VNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTK 123 V D +I S SIP+ + + L L AAR + +I ITG+ GKT+ Sbjct: 63 VEPDENYTIHLKSSSIPIIALHHLTSQLGSL--AARFYGYPSRYLPVIGITGTNGKTSCT 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFG--------------IFEL 167 L +L ++++ IG+ N L A++ P ++ + E+ Sbjct: 121 HFLADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVVMEV 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L + R + +A +T + HL ++ A AK FE L I LN Sbjct: 181 SSHRLAQKRL--NGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE-LPGVQHIVLNA 237 Query: 228 DDSFFEL-LKAKSHALGIKTIYSFGKS------------KNADFQLRKWKQCSEQSWMEV 274 DD + +L L L I T YS + K DF + + + W +V Sbjct: 238 DDPYAQLWLTEFEKQLPIST-YSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDV 296 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 ++ + + +G N+L+ L ++ L + + LS +GR + +R + Sbjct: 297 FIENQFL------MGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFR--V 348 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y P +++ VL + H G+ + G Sbjct: 349 KGKAIVVVD--YAHTPDALQ---QVLQALRSHCRGQLYCLFG 385 >gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] Length = 483 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + GI+IDSR I P + F A+KG DGH FI A++ GA V+ DM + G + Sbjct: 23 ITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLCE-DMPENTVEGVTYVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L SK ++ +TG+ GKTT +L + + + Sbjct: 82 VASTEDAVGPVATL-FHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVC 140 Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I +P L RM ++ E + +G ++F L Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGL-- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL E +AK F+GL K N DD ++ A Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDKNGMVMVQNCKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLM 298 TI ++ ADF+ R +E +G +EV H +G N+L Sbjct: 252 --TIKTYSTRTMADFRAR---------IIECHFEGMYLEVDGHEVGVQFIGKFNVSNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + +S GR + R A +G +ID Y P +++ +S Sbjct: 301 VYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAHTPDALENVLS 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+GR I V G Sbjct: 357 AIHEVL-NGKGRVITVCG 373 >gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] Length = 483 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + GI+IDSR I P + F A+KG DGH FI A++ GA V+ DM + G + Sbjct: 23 ITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLCE-DMPENTVEGVTYVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L SK ++ +TG+ GKTT +L + + + Sbjct: 82 VASTEDAVGPVATL-FHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVC 140 Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I +P L RM ++ E + +G ++F L Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIGGLKFTGGL-- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL E +AK F+GL K N DD ++ A Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMVMVQNCKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLM 298 TI ++ ADF+ R +E +G +EV H +G N+L Sbjct: 252 --TIKTYSTRTMADFRAR---------IIECHFEGMYLEVDGHEVGVQFIGKFNVSNLLA 300 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + +S GR + R A +G +ID Y P +++ +S Sbjct: 301 VYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSA--EGVTAIID--YAHTPDALENVLS 356 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ +G+GR I V G Sbjct: 357 AIHEVL-NGKGRVITVCG 373 >gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 496 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 113/436 (25%), Positives = 178/436 (40%), Gaps = 51/436 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L A+ + P V GI+ DSR++ P + F I G H D H FI A+++GA VV Sbjct: 1 MLSALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVV 60 Query: 70 VNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKA-TIIAITGSVGKTTTK 123 + IG+ +P D AL+ A+A R S+A ++ +TG+ GKTTT Sbjct: 61 TQRPWAVPTGIGAAVVP-----DARLALS--ALADRFYGHPSRALRMVGVTGTNGKTTTA 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGV-------------PLT----LARMPVDVDFGIFE 166 ++ + K IG+ +G P T LA M +G Sbjct: 114 FLVEAIARTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVM 173 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH E R H R +AV T + HL +E +AKA +F GL+ +N Sbjct: 174 EVSSHALEQRRTDH-CRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAAAVVN 232 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285 DD + L A+ G++T+ ++G S+ AD + + + + G++ Sbjct: 233 IDDPYGRRL-AEEIPAGVRTL-TYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAP 290 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G + N + +G L + A+ AL GR + R Q F ++D Sbjct: 291 HLFGTYNVSNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFE--RIDEGQDFTVVVD-- 346 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P + +S +++I G R I V G G+ S D+ + Y Sbjct: 347 YAHTPDGFEKLLSDVARIKEPGS-RVIMVFG---SAGQRDPSKRPDMGRIAGEY------ 396 Query: 406 LSGFHVLALKDALPRS 421 VL L + PR+ Sbjct: 397 ---CDVLVLTEEDPRT 409 >gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 486 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 169/403 (41%), Gaps = 60/403 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I+ DSR + F +KG DGH +I A++ GA ++V+ D+ I +I + Sbjct: 23 VNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGAKVIVIQDDI--EIKDENITII 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 +D AL + SK II +TG+ GKTTT M+ L K IG+ Sbjct: 81 KCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGKTTTAFMIKHILEESNKKVGLIGTIA 140 Query: 145 NHIG---------VPLTLARMP-----VD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N IG P +L VD V++ + E+ L R + + + + Sbjct: 141 NFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVMEVSSHSLALDR--VYGIEFQVGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK ++F E++ +N DD++ + + + L IY Sbjct: 199 FTNLTRDHLDFHKTFENYYKAKFKLF---ERSRIKIVNVDDNYGRQVISDLNNLKCDDIY 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---- 304 SF +DF+ + S + ++ L+ V++ Y N+ LG ++ Sbjct: 256 SFSVKSISDFKAFDEEMGSREIKFKLNLKEDEQFVLNIPGEY----NIYNALGAIAACFK 311 Query: 305 --ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D+ + I+ + V GR +R N G+ +ID Y P ++ ++L Sbjct: 312 LGMPIKDIKSGIENVVVL----GRCERVAKEYNLGYEIIID--YAHTPDGLE---NILKT 362 Query: 363 ISPHGEGRRIAVLGDMC----------EMGELSQSFHIDLAEV 395 +GR I+V G C EMG++S D+A++ Sbjct: 363 AKAFTKGRLISVFG--CGGDRDKVKRPEMGKIST----DIADI 399 >gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium etli Kim 5] Length = 81 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 1/82 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSI+P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLS 82 + GA L+VV+ + ++G L+ Sbjct: 60 MANGASLLVVSEARLPAMGRLT 81 >gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, truncation [Neorickettsia sennetsu str. Miyayama] gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, truncation [Neorickettsia sennetsu str. Miyayama] Length = 325 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 15/296 (5%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S++ + E F ++D FI A GA ++ D+ + IP+ VDD Sbjct: 32 SMNCEKVGKGEIFVIADAKNHDIPCFIETAYLNGASAIITKKDIACP--KIPIPIIRVDD 89 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L A+ KLA + T+I ITGS KT TK ++ L + KT N G Sbjct: 90 PLRAMEKLAAILIRNYQPTVIGITGS-SKTLTKNLIVTLLKNYGKTCYNEDGTGNFAGFT 148 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L + F + E+ + G + + P + VIT I + E I K Sbjct: 149 LGILNADFPCKFLVLEVDTTCSGNVDLFNQITLPKVGVITDIRFHQDRSIDLRELIVMEK 208 Query: 211 AEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 A+IF+ G I LN+D + ELL ++ TI SFG+++N D QL + Sbjct: 209 AKIFQN----GCIAVLNFDTPYTELLLQEARK-NKATIISFGRNENCDVQL--LSHSNNT 261 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPK 323 + +++ K+ +++ H H+ + +G++ L V ++ LSVF K Sbjct: 262 AVVKIGRSQKTCKLLDH--NQHLKYVVPPMIGVMKALKLKVTQNSLNNTLSVFQSK 315 >gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] Length = 484 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 163/369 (44%), Gaps = 34/369 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + + F IKG DGH +I A++ GA ++++ D+ + + +I V Sbjct: 23 ISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDI--EVVNKNISVI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL + + K II ITG+ GKTTT M+ L S K IG+ Sbjct: 81 KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140 Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P +L + V++ + E+ SH E+ + + V + + Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K ++F +++ +N DD++ + + + L K IY Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + ++++F+ K S+ +V L+ K E + G + N L +G L Sbjct: 256 EYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314 Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ ++ V P GR +R N + +ID Y P ++ ++L Sbjct: 315 PMEAIKNGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLQ---NILETARGFT 367 Query: 368 EGRRIAVLG 376 +GR IA+ G Sbjct: 368 QGRLIAIFG 376 >gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM 12042] gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM 12042] Length = 535 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 23/293 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELG 168 I ITGS GKT++K +L LS + S+N +G+ +T+ P F I E+G Sbjct: 192 IGITGSYGKTSSKNILQQILSEKFYSLPTPASFNTPMGITITIREQLKPTHEVF-ICEMG 250 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+G+I L V+P I ++T+I P HL+ F E I + K ++ E L TG LN D Sbjct: 251 ADHVGDIEQLMDFVQPQIGLVTSIGPQHLNTFGSQENIVTEKMKMIEKLPVTGFGVLNKD 310 Query: 229 DSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 + K+ I +G + ++ D++ + S ++ +G + Sbjct: 311 NELIRNYYIKNKC----PIAWYGIEQEDVDYRAVNISFGPQGSSFDIHTREGADIPFKTR 366 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDES 345 +G H N+L + + L + A++ + R +R + + +T ID++ Sbjct: 367 LLGEHNIANILAAVAVGRHLGVSWEQLQSAVA-----QVRYVEHRLEVKKINGYTFIDDA 421 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAE 394 +N+NP ++ VL + G R V M ++G E+++ F + + + Sbjct: 422 FNSNPVGSAMSLQVLKTMP----GTRFIVTPGMIDLGPRQHEINKQFGMKMKD 470 >gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] Length = 493 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 58/412 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHD+ AV+ GA +V + +PV Sbjct: 26 ITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKAVKSGAAAIVAE----HPLNITDVPVI 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V AL ++A A + K +I ITG+ GKT+T M+ + +K IG+ Sbjct: 82 IVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMY 141 Query: 144 ----------NNHIGVPLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHI 186 N +TL + + DVD I E+ HLG + H I Sbjct: 142 MKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRV----HGCDYDI 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237 AV T + HL + +EE AK+ +F L K LN DD S+FE + A Sbjct: 198 AVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSYFEKVTA 257 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++ + AD + + + + ++ + +V +G N+L Sbjct: 258 AE-------VMTYALEQKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNIL 310 Query: 298 --MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +++GIVS LT +T + A+ +GR + C +Q F ++D Y P S++ Sbjct: 311 AAVSVGIVSGLT--FETIVSAIEELEGVKGRFELVNC--DQDFPVIVD--YAHTPDSLEN 364 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ +++ EG+ V+G C G+ ++ +A++ Y V+ S Sbjct: 365 VLTTCRELT---EGKIFCVIG--C-GGDRDKTKRPQMAQIAVKYADEPVFTS 410 >gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] Length = 502 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 162/364 (44%), Gaps = 37/364 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSLSI 83 + G+S +SR+I P + F A+ G DG +I A+ GA +++ TDM A + L Sbjct: 22 IGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGARVIL--TDMRPLEAPLDDLDT 79 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ V++ L K A + I A+TG+ GKT+T + L + + + IG+ Sbjct: 80 PIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTDFLRQLWTRVTWQASSIGTL 139 Query: 144 -------NNHIGVPLTLARM--PVDVDF-----GIFELGMSHL-------GEIRFLTHLV 182 G L L ++ P V + + G++HL G ++ + Sbjct: 140 GVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAGVTHLALEASSHGLVQQRLDGL 199 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSF----FELLKA 237 HIA T + HL + + +E AK+ +F + L G +N DD + ++L A Sbjct: 200 NIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHAGAAIINIDDPYGRRLCDMLTA 259 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A I I +FG + +ADFQ+ K M V+ GKS + G A N L Sbjct: 260 QGDARQI-VIQTFGFADDADFQIEKITPIDNILDMSVKHDGKSWHIPLAMSGTFQAVNAL 318 Query: 298 MTLGIVSILTA-DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 T GI++ ++ + ++ L+ P GR + QG ++D + P +++AA Sbjct: 319 -TAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQTV-TGHPQGAQIVVD--FAHTPDALRAA 374 Query: 357 ISVL 360 + L Sbjct: 375 LEAL 378 >gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] Length = 484 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 34/369 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + + F IKG DGH +I A++ GA ++++ D+ + + +I V Sbjct: 23 ISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDI--EVVNKNISVI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL + + K II ITG+ GKTTT M+ L S K IG+ Sbjct: 81 KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140 Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P +L + V++ + E+ SH E+ + + V + + Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K ++F +++ +N DD++ + + + L K IY Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + ++++F+ K S+ +V L+ K E + G + N L +G L Sbjct: 256 EYSIREDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314 Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ + ++ V P GR +R N + +ID Y P ++ ++L Sbjct: 315 PMEAIREGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLQ---NILETARGFT 367 Query: 368 EGRRIAVLG 376 +GR IA+ G Sbjct: 368 QGRLIAIFG 376 >gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 482 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +LL+ IQ + + + G++IDSR +A F A++G DGH +I A++KGA + Sbjct: 5 ELLKTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKGA-IA 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V+ DM + +I V D A+ K+A A SK ++ +TG+ GKTT +L Sbjct: 64 VLCEDMPEE-PTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 I + N+I P+TL R+ ++ + E+ Sbjct: 123 YNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ + K N DD Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKILESHFEGMLLDFNNRELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G ++D ++ + Sbjct: 293 FNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSP--KGITAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G+G+ I V+G Sbjct: 350 ----ALVNVLNAIHDVLEGKGKVITVVG 373 >gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] Length = 493 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 58/412 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHD+ AV+ GA +V + +PV Sbjct: 26 ITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAVKSGATAIVAE----HPLNITEVPVI 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V AL ++A A + K +I ITG+ GKT+T M+ + +K IG+ Sbjct: 82 IVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMY 141 Query: 144 ----------NNHIGVPLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHI 186 N +TL + + DVD I E+ HLG + H I Sbjct: 142 MKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRV----HGCDYDI 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237 AV T + HL + +EE AK+ +F L K LN DD S+FE + A Sbjct: 198 AVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEASSYFEKVTA 257 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++ + AD + + + + ++ + +V +G N+L Sbjct: 258 AE-------VMTYALERKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNIL 310 Query: 298 --MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +++GIVS LT +T + A+ +GR + C +Q F ++D Y P S++ Sbjct: 311 AAVSVGIVSGLT--FETIVSAIEELEGVKGRFELVNC--DQDFPVIVD--YAHTPDSLEN 364 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ +++ EG+ V+G C G+ ++ +A++ Y V+ S Sbjct: 365 VLTTCKELT---EGKIFCVIG--CG-GDRDKTKRPQMAQIAVKYADEPVFTS 410 >gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] Length = 488 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 161/394 (40%), Gaps = 51/394 (12%) Query: 9 DLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++LQAI + G+V ++GI +DSR I + F A+KG DGH +I A++KGA Sbjct: 5 NILQAI---TTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123 VV T + S ++ V+D A+ +LA SK +I +TG+ GKTT Sbjct: 62 TAVVCET--LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTIA 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVD-VDFGIFE- 166 +L I + N+I P+T L RM + + E Sbjct: 120 TLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFMEV 179 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +G ++F + T + HL E AK F+GL KT Sbjct: 180 SSHAVAQKRIGGLKFAG-------GIFTNLTRDHLDYHKTFENYLKAKKAFFDGLLKTAF 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N DD ++ + A + ++ ADF+ + + E +++ + E Sbjct: 233 ALTNADDRNGLVMTQNTKA----KVATYSLRSLADFKGKVLEDGFEGMLLDIN----NRE 284 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V IG A N+L +L + + LS P GR R +G+ ++ Sbjct: 285 VNVQFIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLRST--KGYTAIV 342 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P ++ ++ + ++ +G G+ I V+G Sbjct: 343 D--YAHTPDALTNVLNTIHEV-LNGRGKVITVVG 373 >gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 484 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 34/369 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + + F IKG DGH +I A++ GA ++++ ++ + + +I V Sbjct: 23 ISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENGASVIIMQDEI--EVVNKNISVI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL + + K II ITG+ GKTTT M+ L S K IG+ Sbjct: 81 KVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGKKVGLIGTIA 140 Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P +L + V++ + E+ SH E+ + + V + + Sbjct: 141 NYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVS-SHSLELDRV-YGVDFEVGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K ++F +++ +N DD++ + + + L K IY Sbjct: 199 FTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIINNDDNYGKQVIKDLNKLKAKNIY 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + ++++F+ K S+ +V L+ K E + G + N L +G L Sbjct: 256 EYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILSIPGEYNIYNALGAIGACYKLNI 314 Query: 309 DVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ ++ V P GR +R N + +ID Y P +K ++L Sbjct: 315 PMEAIKNGINKVIVP--GRCERTATNYNLPYDIIID--YAHTPDGLK---NILETARGFT 367 Query: 368 EGRRIAVLG 376 +GR IA+ G Sbjct: 368 QGRLIAIFG 376 >gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] Length = 501 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 156/381 (40%), Gaps = 52/381 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I P + F A +G + DG ++I A+ +GA V + D +P G+ D+ Sbjct: 29 DSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQWQPEWRVPNQGISDL 88 Query: 92 LGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--IGSYNN-- 145 +A A L II +TG+ GKT+ + L A+ ++++ +C IG+ N Sbjct: 89 SQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQAIDNLEQAPSCAIIGTVGNGF 148 Query: 146 --HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIA 193 + PV V I + + +S G ++ + V H AV T + Sbjct: 149 FGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYRVNGVPFHTAVFTNLT 208 Query: 194 PAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA--KSHALGIKT--- 246 HL + E +AK +F +GL+ +N DD+F L A K H+ +KT Sbjct: 209 RDHLDYHGSMAEYGAAKERLFYWQGLQNA---IINSDDAFGAALAAELKQHSGSLKTEGC 265 Query: 247 ----IYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQN 295 Y++G ++ AD + + E W E Q + + G AQN Sbjct: 266 NEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEGSAQTRLL-------GRFNAQN 318 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 LG + D A+ ALS P G R C + Q L+ Y P +++ Sbjct: 319 FAAALGALCAAGYDFQAALTALSRIRPATG---RMDCII-QPDKPLVVVDYAHTPDALEK 374 Query: 356 AISVLSQISPHGEGRRIAVLG 376 A++ L +I E R V G Sbjct: 375 ALTTLREIQ-QPESRLWCVFG 394 >gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] Length = 498 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 107/406 (26%), Positives = 167/406 (41%), Gaps = 57/406 (14%) Query: 4 LWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T +L + I+G ++I + GIS DSR I F I G H DG F AV+ Sbjct: 1 MKTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVE 60 Query: 63 KGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVG 118 KGA V+ N D+ I +++P D+ AL + K +I +TG+ G Sbjct: 61 KGAVAVLTNKHLDLPLEITQITVP-----DIHAALEDIVPYFYDYPGKKMRMIGVTGTNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---------HIGVP------LTLARMPVD-VDF 162 KTTT ++ L IG+ + H P LA M + +D+ Sbjct: 116 KTTTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMDY 175 Query: 163 GIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + E L ++ + I + T AV T + HL E +AKA++F GL Sbjct: 176 VVMEVSSHALALNRVAGIEYDT-------AVFTNLTQDHLDFHKSFENYVAAKAKLFSGL 228 Query: 218 ------EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +K T +N DD E+LKA S + ++G K+AD + + + S Sbjct: 229 TAEPPVKKNKTAVINIDDPHADEILKATSC-----KVLTYGVEKDADLKGSNLQVGLKSS 283 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 +V S+ + H G N L +G D D KA+ F+ GR + Sbjct: 284 SFDVVGPFVSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELV 343 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Q F ++D Y+ P S++ A++ + P+ R I V G Sbjct: 344 EAG--QDFAIVVD--YSHTPDSLEKALTTARAMKPN---RIITVFG 382 >gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium cellulovorans 743B] gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] Length = 481 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 99/371 (26%), Positives = 156/371 (42%), Gaps = 42/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NGI DSR + + F I G DGH+F AV GA +++ D+ A + + Sbjct: 23 INGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSGANVIICEKDITA---YKDVTII 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL K++ + II +TG+ GKTT+ ML L IG+ Sbjct: 80 KVKNTRKALAKVSAVYYNNPERRLKIIGVTGTNGKTTSVFMLKAILEKAGFKVGLIGTIA 139 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P L L ++ D VD+ + E+ L R + + + + Sbjct: 140 NYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVMEVSSHSLDLDR--VYGIEFNSGI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E ++KA++F + K+ I N DD + L K+ K Y Sbjct: 198 FTNLTQDHLDYHKTLENYFNSKAKLFT-VSKSSII--NLDDDYGVALADKTQE---KLTY 251 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT 307 + KNAD + S S E++ G+ E+ + I G + QN L +G SIL Sbjct: 252 AI--DKNADLKAENINLTSRGSTFELEYNGEK-EIFNINIPGKYNIQNALGCIG--SILK 306 Query: 308 ADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 V + + L GR + N GF ++D Y P S+ + +L Sbjct: 307 EGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVD--YAHTPDSL---LKILKTARE 361 Query: 366 HGEGRRIAVLG 376 +GR I+V G Sbjct: 362 FTDGRLISVFG 372 >gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 144 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + P F A+KG +D HDF A GAG ++V+ + + +P V D Sbjct: 30 DTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTR 84 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A +LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+T Sbjct: 85 QAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPIT 144 >gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] Length = 485 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 134/324 (41%), Gaps = 34/324 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I SR++ + F AIKG +DGH+FI A+ GA VV A L +P Sbjct: 22 VNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGE----AEYDCLPVPYI 77 Query: 87 GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL LA +I ITG+ GKTTT M+ + ++ + + + Sbjct: 78 KVQDARQALGNLAKTLYCDPSKMHNMIGITGTNGKTTTAYMVKHIFQTASESCSLFSTVS 137 Query: 145 NHI-GVPL-------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N + G L + RM +D + + E+ L + R + + + T Sbjct: 138 NFVNGTELMSTATTPDILELNKMLRMSMDKNV-VMEVSSHGLHQKR--VEGIEFNYGIFT 194 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN----YDDSFFELLKAKSHALGIKT 246 + HL +EE + KA +F+ L+K G +N + LK K ++ Sbjct: 195 NLTHDHLDYHQNMEEYFNTKAGLFKLLKKNGEAIINSGCPWGRKLINQLKNKR-----QS 249 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + SFG S+N D QL K S + +Q +E+ G H QN L + Sbjct: 250 VLSFGTSENDDLQLLSTKDGV--SKIRIQGSNVKLEIKMPMPGNHNLQNALAAILCAYRA 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRY 330 +V+ +A+ F GR + Y Sbjct: 308 GVNVNDIKRAVESFPGVPGRFEEY 331 >gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] Length = 483 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 171/391 (43%), Gaps = 32/391 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P FF I+G DGH +I A+ +GA ++V + +++ I V++ L Sbjct: 22 DSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELLEKKNG--IIYILVENTL 79 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----YNN- 145 LN+++ +K II +TGS GKT M+ A+S T IG+ YN Sbjct: 80 EELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYCNT-GYIGTISLEYNGF 138 Query: 146 HIGVPLT------LARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 P T L R ++ G + + S G V +AV+T I H Sbjct: 139 KEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDSVNFSVAVMTNIGAEH 198 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 L E+ AK ++FE ++ +G + LN DD F L+ K+ G I ++G + + Sbjct: 199 LDFHGTREQYILAKQKLFEMIKPSGWVVLNSDDENF--LRIKNSTKG--KILTYGINNQS 254 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 D + ++ + S ++ +G + V + N+L + + + D ++A Sbjct: 255 DVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVCTLIAMGCDEKMVLQA 314 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + P EGR + + Q F +ID Y + + + + + +GR IAVLG Sbjct: 315 VKEVKPVEGRMELIKAK--QNFSVIID--YCQHINNYEQIFEFVDSVR-QNKGRLIAVLG 369 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 G+ + ++ +V + Y + HV L+ Sbjct: 370 ---APGKRNYKMRREIGKVANKY-LDHVILT 396 >gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] Length = 487 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 27/270 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++ + DSR I + F AIKG + DGHD+I AV+KGA V+V + + ++ I V Sbjct: 23 ISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKGATAVIVEKKLKKYLSGITYIEV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + L K A L + +I ITG+ GKTTT ++ L A G+ N Sbjct: 83 ENTRKEMAVLAKNFFANPL-ADIDLIGITGTNGKTTTAYLIYNILRKNSFKTAMFGTIKN 141 Query: 146 HI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVIT 190 I G ++ R P +D + + ++++ V H +AV T Sbjct: 142 IIAGEEISATRTTPESLDLYRY-FSQAKTAGVQYIVMEVSSHALDLYRVHQMDFSLAVFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHALGIKTIY 248 ++P HL + AK+++F L + +N DD S F L K+K+H Y Sbjct: 201 NLSPEHLDYHKDLASYRQAKSKLFSQLSPDASAVINLDDKNSGFMLEKSKAHNFK----Y 256 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 S ++NAD + +K +Q+ + Q QG Sbjct: 257 SLS-NQNADLYCQNYKL--KQNSLNYQSQG 283 >gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] Length = 482 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 162/388 (41%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +LL+AIQ I + + G++IDSR +A F A++G DGH +I A++KGA + Sbjct: 5 ELLKAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKGA-IA 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V+ DM + V D A+ K+A SK ++ +TG+ GKTT +L Sbjct: 64 VLCEDMPEETNP-DVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 I + N+I P+TL R+ ++ + E+ Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ + K N DD Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G ++D ++ + Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSP--KGITAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G+G+ I V+G Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] Length = 522 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 150/366 (40%), Gaps = 49/366 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR++ P F AI+G DGH FI AV GA LVV + VF Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEALPTRARERFPGVVF 121 Query: 87 G-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D AL + A A + ++ +TG+ GKTT ++ L ++ +T + + Sbjct: 122 ARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETAGLLSTI 181 Query: 144 NNHIG-----------VPL----TLARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRP 184 G PL TL RM VD G M SH L + R H + Sbjct: 182 KVQAGGETTALALTTPGPLVLHRTLRRM---VDRGCTACAMEVSSHALDQDRV--HGLDY 236 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+ TT++ HL +++ +AK +F+ L T N DD + A + A Sbjct: 237 EVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNADDEAGPTMVADTEA--- 293 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMT 299 + SFG ++AD E + +E +L G+ + + H G A NM Sbjct: 294 -RVVSFGLDRDADI---------EATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAA 343 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G + L + AL+ P GR + R G ++D Y P +++ + Sbjct: 344 YGTGTALGHAPEAVADALADAPPVPGRVEPLR--FGDGTTVIVD--YAHTPDALENVLRT 399 Query: 360 LSQISP 365 + +P Sbjct: 400 VRDTTP 405 >gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 501 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/349 (25%), Positives = 143/349 (40%), Gaps = 44/349 (12%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + H++ PQ ++ + DSR I P + A+KG DGH+FI A+++GA VV Sbjct: 6 LLKDLPSHTLTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFIPEAIRRGACAVV 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 + V+D A++ + A R T+I +TG+ GKTTT Sbjct: 66 AEMPCTQEAREAGVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMIGVTGTNGKTTTA---Y 122 Query: 128 IALSSIKKTYACIG-----SYNNHIGV---------PLTLARM----------PVDVDFG 163 IA S +K+++ G +Y+N + PL L + V ++ Sbjct: 123 IAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEMYENGCRGVSMEVS 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------ 217 L + I F ++ + T + HL +E AKA++FE + Sbjct: 183 SHALDQERVAGINF-------NVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKS 235 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + +N DD++ L G T+ ++G + ADF++ ++ S E++ + Sbjct: 236 RRKPVAVINIDDAYGRRLAEMFS--GRMTVKTYGSALGADFRMLVHHATAKGSEYELEYK 293 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 GKS V IG N L L V V AI L GR Sbjct: 294 GKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGR 342 >gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] Length = 482 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 158/388 (40%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLLQ IQ I + G++IDSR I F A++G DGH +I A+ KGA V Sbjct: 5 DLLQTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--V 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V + + I V D A+ K+A SK +I +TG+ GKTT +L Sbjct: 63 AVLCEELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 + + N+I P+TL R+ ++ + E+ Sbjct: 123 YNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ L K N DD Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G+ ++D ++ + Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G+G+ I V+G Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] Length = 810 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 35/369 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88 DSR I P + F A +G + DG +I A++ GA V D + P+ + Sbjct: 29 DSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPISDL 88 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNH 146 G L AV I +TG+ GKT+ + + A+ + KK+ A IG+ N Sbjct: 89 KQCAGILAN-AVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIGTVGNG 147 Query: 147 IGVPL--TLARMPVDVDFGIF-----ELGMSHL-------GEIRFLTHLVRPHIAVITTI 192 L T P V +LG +H+ G ++ + V A+ T + Sbjct: 148 FFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTAIFTNL 207 Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKTIY 248 HL + + E + KA +F +GLE +N DD F +L+ K IY Sbjct: 208 TRDHLDYHNSMAEYGATKARLFHWQGLENA---IINSDDEFGSKLILQLKQQYADNLNIY 264 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S+G ++NAD ++ ++ ++ + +Q + +G AQN +G + Sbjct: 265 SYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALCASGF 324 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHG 367 + A+ ALS P G R C +N+ L+ Y P +++ A++ L +I SP Sbjct: 325 EFQAALNALSQIRPATG---RMDCIINEN-KPLVVVDYAHTPDALEKALTTLREIQSP-- 378 Query: 368 EGRRIAVLG 376 E + V G Sbjct: 379 ESKLWCVFG 387 >gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] Length = 491 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + + +DSR + P FF IKG +DGH ++ A++ GA VV + D+ + + + Sbjct: 11 PDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDIKRN--NAN 68 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139 + V DV ALN++A K + +TG+ GK++ M+ L+ + YAC Sbjct: 69 VVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIRNLLNPV---YACG 125 Query: 140 -IGSYNNHIG-------------VPLT--LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 IG+ + G VPL L M L +S +G + T V Sbjct: 126 YIGTISIEYGDTKLPPLLTTPDIVPLQQILHDM-AQAGMKACALEISSIGLEQHRTDSVD 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 IA+ T + HL +E AK +F+ L+ GT N DD + A A Sbjct: 185 VDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKPDGTAITNKDDPHGMAIVADCPA-- 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLG 301 + ++G + AD++ + ++QL +VH G Y + N++ Sbjct: 243 --RVVTYGVLEKADYEAK-----------DIQLNADKTIFTLVHDGSEYPVQTNLVAMFN 289 Query: 302 IVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + ++L ++ ++ L+ EGR +R Q F ++D + P Sbjct: 290 LYNLLAVIAALHEGGLPIEQILEQLNTIPQIEGRMERIE--EGQPFNIIVD--FAHTPDG 345 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ S I+P E R I+V G Sbjct: 346 LEQIFKFASAITPK-EKRIISVFG 368 >gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] Length = 500 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 33/253 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV--VNTDMVA---SIGSLSIP 84 I+ DSR I P + F A+KG DGHDFI AV+KGA V+ + TD +A + S +P Sbjct: 26 INYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAVAVLSELKTDAIARKLACESDQMP 85 Query: 85 V-FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V V+D AL++LA +I ITG+ GKTTT +L L++ + IG Sbjct: 86 VLLQVEDSRKALSQLAATFYGHPFRTMNLIGITGTNGKTTTSYLLEFILAAAGRNPGVIG 145 Query: 142 SYNNHIG---------VPLTLARMPVDVDFG-------IFELGMSHLGEIRFLTHLVRPH 185 + N IG P +L M + + I E+ L + R R Sbjct: 146 TINRRIGQLCFKSSVTTPESLDLMKILREMADQSATDVIMEVSSHALDQGRVADCPFR-- 203 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-----IFLNYDDSFFELLKAKSH 240 +A+ T I+ HL +++ AK+ +FEGL G +N DD + + L A + Sbjct: 204 VALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGNQGAACAVINTDDPWGKHLMALTP 263 Query: 241 ALGIKTIYSFGKS 253 A + Y G S Sbjct: 264 ARTV--TYGLGNS 274 >gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] Length = 522 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 96/366 (26%), Positives = 150/366 (40%), Gaps = 49/366 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR++ P F AI+G DGH FI AV GA LVV + VF Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEALPTRARERFPGVVF 121 Query: 87 G-VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D AL + A A + ++ +TG+ GKTT ++ L ++ +T + + Sbjct: 122 ARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETAGLLSTI 181 Query: 144 NNHIG-----------VPL----TLARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRP 184 G PL TL RM VD G M SH L + R H + Sbjct: 182 EVRAGGETTAPALTTPGPLVLHRTLRRM---VDRGCTACAMEVSSHALDQDRV--HGLDY 236 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+ TT++ HL +++ +AK +F+ L T N DD + A + A Sbjct: 237 EVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNTDDEAGPTMVADTEA--- 293 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMT 299 + SFG ++AD E + +E +L G+ + + H G A NM Sbjct: 294 -RVVSFGLDRDADI---------EATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAA 343 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G + L + AL+ P GR + R G +ID Y P +++ + Sbjct: 344 YGTGTALGHVPEAVADALADAPPVPGRVEPLR--FEDGTTVIID--YAHTPDALENVLRT 399 Query: 360 LSQISP 365 + +P Sbjct: 400 VRDTTP 405 >gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] Length = 482 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 160/395 (40%), Gaps = 49/395 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L + I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ L K+ Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ DF+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis 3_1_12] gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] Length = 485 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + F A++G DGH +I A++KGA + ++ ++ A + I Sbjct: 23 ITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKGA-IAILCEELPAELNE-EITYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K+A A SK ++ +TG+ GKTT +L I + Sbjct: 81 QVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ + E+ + + R ++ + Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSIAQKRISG--LKFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AK + F+ L K+ N DD ++ + + +Y Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDELPKSSFSLTNLDDKNGLVMTQNTKS----KVY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ +DF+ + E + + L + E+ IG A N+L G +L Sbjct: 255 TYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVQFIGRFNASNLLAVFGAAVLLGK 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366 + + ALS HP GR R QG+ ++D ++ + A ++VL+ I Sbjct: 311 KEEEVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363 Query: 367 GEGRRIAVLG 376 G+G+ I V+G Sbjct: 364 GKGKVITVVG 373 >gi|326330650|ref|ZP_08196954.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] gi|325951491|gb|EGD43527.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] Length = 496 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 40/355 (11%) Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-------NKLAVAARLRSKA 108 F+LHAV V V ++A + + +P+ V AL +A ++++ A Sbjct: 103 FVLHAV------VTVLIALLAPVAAGLLPILAVPLAEAALAIMWPIEKAMAKKWQVQAAA 156 Query: 109 TI-------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDV 160 TI +AITGS GKT+TK T + T A S+NN +G+ + R+ Sbjct: 157 TIKKVNPKIVAITGSYGKTSTKNYATHLMQGRWSTLASPASFNNAMGLSRAVNDRLQPGT 216 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + E+G GEI LT + P +A ITTI AHL E I AK+EI L K Sbjct: 217 DIFVAEMGTYGPGEIAELTEIFPPEVAAITTIGEAHLERMKSRETIVKAKSEI---LPKA 273 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 T+ LN D L+ A S A+ + K V+L + Sbjct: 274 STVVLNIDVPELALIAENLRASKRVIACSAVPGTAAEVLVTDGKLTINNETYAVELPDE- 332 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V H I N+ + +G+ + ++T + L+ G R G Sbjct: 333 ---VGHPI------NVAIAVGLALAVEVPIETITQRLASI---PGTPHRAEANRTPGGVW 380 Query: 341 LIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMCEMGELSQSFHIDLAE 394 +ID+++N+NP AA++ +++ GE G + M E+G + +I+ A+ Sbjct: 381 VIDDTFNSNPTGAAAALAKAKRLA--GESGTVWTITPGMVELGTEQAARNIEFAQ 433 >gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii str. Madrid E] gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii] gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia prowazekii] gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii Rp22] Length = 480 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 157/369 (42%), Gaps = 51/369 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S +S+++ E FFAIKG + DG+DFI A+ GA LV+ +I V Sbjct: 14 IKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAIDK----VI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+DV AL + + +I++TG+ GK++ + A S +KK A IG+ Sbjct: 70 YVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTIGLE 129 Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188 I G + +P D+ F +L E I +L H I Sbjct: 130 IFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 189 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T+ + HL E AK ++F + L +G LN D E +K H +K I Sbjct: 190 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNVKFI 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298 + GK D Q+ K CS L G++++ + + I Y++ A N+L+ Sbjct: 250 -TVGKK--GDLQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 297 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + D I+AL+ P +GR +R G +D Y+ P S++ A+ Sbjct: 298 AALTLYYTGFKFDEIIEALAKVKPIKGRMERI-----DGTNIFVD--YSHTPDSLEKALI 350 Query: 359 VLSQISPHG 367 L I HG Sbjct: 351 ELKNIKLHG 359 >gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] Length = 522 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 42/384 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G +P V GI+ + R P F A G DGH FI HA+++G +V + I Sbjct: 24 GTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAIERG----IVAVVGMQEIS 79 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML-TIALSS---- 132 LSIP V + AL L+ A + T+I +TG+ GKTTT ++ I L++ Sbjct: 80 GLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTGTDGKTTTSNLIYQILLAAGHSA 139 Query: 133 --IKKTYACIGSYNNHIGVPLTLARMPVDVDF--GIFELGMSHLGEIRFLTHLVRPH--- 185 + A IG G +T P + + G++H+ + +H + H Sbjct: 140 GIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRAAGLTHV-VLEATSHGLEQHRVT 198 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT--------IFLNYDDSFF 232 + V+T I HL E +AK +F L +T LN DD + Sbjct: 199 GCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSETPEKPHGNPRLAVLNRDDQSY 258 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E L++ + S+G ++ AD + + +++ ++ + V +G + Sbjct: 259 EYLQSLVRVPAV----SYGLAEGADLRAENIRYEADRLRFDIVGRDFRQPVETCLVGEYN 314 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L ++L +D+ A + + G+ R + Q F ++D + P + Sbjct: 315 VSNCLAAFA-ATVLGLGIDSQHAAQGIANMSGVPGRMERIHMGQSFHAIVD--FAHTPNA 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 +K A+ QI+ GR IAV G Sbjct: 372 LKQALLTARQIT---RGRVIAVFG 392 >gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas gadei ATCC BAA-286] Length = 483 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 156/392 (39%), Gaps = 43/392 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL+ I I + GI DSR AF A+KG DGH +I +A+ GA Sbjct: 3 LKDLLKGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALDLGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V+ + S I V D A K+A +K ++ +TG+ GKTTT Sbjct: 63 VVIHQEKVDTS--REGITYIKVKDSADAAGKIATLWYGDPSAKLKLVGVTGTNGKTTTAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFGIFELG 168 +L + + N+I PL+L M ++ E+ Sbjct: 121 LLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAKMVDAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + ++ L + + T I HL + E AK F+ L +T N D Sbjct: 181 -SHAIHQKRISGL-KFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDNLPETAFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + KAK + +KT+ ADF+ + ++ + + V+ K ++V Sbjct: 239 DKNGAVMLQNTKAKKYTYSVKTL--------ADFKAKIIEKHFDGTA--VEFNNKELQV- 287 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L G +L D D A+ LS P GR + R N + ++D Sbjct: 288 -QFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPEN--YTAIVD- 343 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ + + ++ G GR I V+G Sbjct: 344 -YAHTPDALTNVLEAIHEV-LEGNGRVITVVG 373 >gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 175/433 (40%), Gaps = 54/433 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ DSR + P FF I+G DGH F A + GA + V + + +G PV Sbjct: 24 VDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGANVFVASKPIKEQVGDS--PVI 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V DV + A +I +TG+ GKTT M+ L + K A IG+ Sbjct: 82 YVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVTHMVDYLLEELGKPTALIGTMY 141 Query: 145 NHIG---------------VPLTLARMP-VDVDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG V TL ++ + D I E+ SH LG + + + + Sbjct: 142 RKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEVS-SHALQLGRVWGIDY----N 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 +AV T + HL +E A AK+ +F L EK LN D +F + Sbjct: 197 VAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVAILNRDQEYFGQFAYST 256 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A I S+G S+ AD + + + + V + G+ + V+ IG N+L Sbjct: 257 SA----EIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPMIGLFNVYNVLAA 312 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+ + + AI+ ++ F P G G+ Q F +ID + P ++ +S Sbjct: 313 FGVAMVNGIPLRKAIEKIAKF-PGVG-GRMQLIQKGQPFQVIID--FAHTPDGLENVLST 368 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++ + R I ++G G S +L E+ S + +L + Sbjct: 369 LEEVKIN---RVITIMGHSG--GNRDSSMRPELGEIA-------FEKSDYVILTADNPRQ 416 Query: 420 RSIHVHYSETMDG 432 S+ YSE + G Sbjct: 417 ESLEKIYSEIVSG 429 >gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 482 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 158/388 (40%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLLQ IQ I + G++IDSR I F A++G DGH +I A+ KGA V Sbjct: 5 DLLQTIQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--V 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V + + I V D A+ K+A SK +I +TG+ GKTT +L Sbjct: 63 AVLCEELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 + + N+I P+TL R+ ++ + E+ Sbjct: 123 YNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ L K N DD Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G+ ++D ++ + Sbjct: 293 FNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G+G+ I V+G Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] Length = 495 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 43/391 (10%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+ I+G+ G+ ++ ++ DSR + P FF I G DGH F A +KGA V Sbjct: 12 LKKIEGNLSGVT----IDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKGAVAFVA 67 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + +G PV V DV + LA +I +TG+ GKTT M+ Sbjct: 68 SKSIKNQVG--DTPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTVTHMIDA 125 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL--VRPH- 185 L K A IG+ IG P + + L EI T L V H Sbjct: 126 LLEKPNKPTALIGTIYRKIG-PKIIQTHNTTPEILTLHETFQELKEIGGETCLMEVSSHA 184 Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLN 226 V T + HL +E+ A AK+ +F L K LN Sbjct: 185 LQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKPKVAVLN 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD F++ + + + S+G ++ ADF+ + + + E+ +Q +V Sbjct: 245 ADDEQFQMFEYSTPV----QVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLVDM 300 Query: 287 G-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G NML + + + ++ +K + F GR + Q F ++D Sbjct: 301 PLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQ--SVDKGQDFQVIVD-- 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + P ++ + L+QI PH G+ I V+G Sbjct: 357 FAHTPDGLENVLDSLAQI-PH--GKIITVVG 384 >gi|227514324|ref|ZP_03944373.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087296|gb|EEI22608.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 263 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 16/268 (5%) Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F ++IA AK EI GL + GT + D+ LL+ ++ L +T +FG+ + D Sbjct: 1 FGSRDKIADAKMEITHGLAEDGTFVYDGDEP---LLRERAAKLSQQT-KTFGRQLDDDLY 56 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + V + + +G + N L + + ++ +AL Sbjct: 57 ATSVNPDVDHVSFTVNQWPDEVFTIPL-VGEYNVNNALAAMTVGKLMHVTPANMKQALQN 115 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 E R + A + ++ + YN+NP ++K ++ L+ I G+R+AVLGDM Sbjct: 116 VELTENRSEWVAGANGE---RILSDVYNSNPTAVKEVLATLATIPV--AGKRVAVLGDML 170 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGL 433 E+GE S H L + + ++ V+L G + ALKDAL ++ +H + + L Sbjct: 171 ELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRKAL 230 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +Q+SL GDVV++K+S+ +++ Sbjct: 231 TDALQASLTTGDVVLLKASHGLHLEKVL 258 >gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM 43183] gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM 43183] Length = 471 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 150/370 (40%), Gaps = 34/370 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152 L++ A L + +A+ G+ GKTTT MLT+ L + + Y CIG L Sbjct: 103 LHRSEALAALMAGRRAVAVAGTHGKTTTTSMLTVVLQHAGLDPAY-CIGGQ-------LV 154 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D G + + + FL + PHIAV+T + HL N+ E++ A Sbjct: 155 TTGLGADDGTGDVFVAEADESDGSFLRY--SPHIAVVTNVEADHLDNYGAFEKVKENFAR 212 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 E +E G + + DD L + G+ T+ ++G+S AD +L + S Sbjct: 213 FVERIEPGGALVASADDPVAGELAGAARERGL-TVVTYGESAGADLRLTGFTPRGLGSRF 271 Query: 273 EVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 ++ G+ ++EV G H A N L + +L D T L+ F G +R Sbjct: 272 AIEGLGELTLEVP----GRHYAHNATAALAVARLLGCDFATIRDGLASF---TGSMRRLE 324 Query: 332 CALNQGFFTLIDESYNANP----ASMKAAISVLSQISPHGE-GRRIAVLGDMCE------ 380 G + D SY +P A ++A L Q++ G GR +AV Sbjct: 325 RKGEAGGVQVFD-SYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFF 383 Query: 381 MGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E ++ + D+A VL +Y G + DA+P V Y + + + Sbjct: 384 ATEFGRALGLADVAVVLDVYGAREDPEPGVSGRLIADAVPEGTRVEYVPVREQVPQVVAE 443 Query: 440 SLVDGDVVVV 449 GD+V+ Sbjct: 444 LARPGDLVLT 453 >gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 492 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 31/372 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ +S+ + FFA+ G DGH FI A++KGA VV T + Sbjct: 21 IDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGHFMPSEYADVTWI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 GV+D AL+ ++ + II ITG+ GKTTT ++ L K IG+ Sbjct: 81 GVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKKTGVIGTIK 140 Query: 145 ------NHIGVPLT---------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + V T L M V V++ I E+ L R + IAV Sbjct: 141 YLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKR--VDYTKFDIAV 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T ++ HL +E+ +AK +F E L+ G +N+DD + L + L K I Sbjct: 199 FTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRL---AEQLNTKKI 255 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++ AD ++ ++ +++ + + ++ K + V H +G N++ + + L Sbjct: 256 TYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVISAVSVAVAL 315 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D A+S H +GR + R Q F +D Y +P +++ + + ++ Sbjct: 316 NIPFDIIESAISDAHSPDGRFE--RVDEGQDFLVFVD--YAHSPDALERLLISVRKLKEE 371 Query: 367 --GEGRRIAVLG 376 G+ + V G Sbjct: 372 ISKNGKIVTVFG 383 >gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 500 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D VDF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|163784032|ref|ZP_02178990.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159880704|gb|EDP74250.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 167 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 8/121 (6%) Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ +N+ +++ I+ L D + A+ L F P +GRGK + T+ID++YNANP Sbjct: 2 NILENIAISILIMDYLGLDFEKALDTLKEFSPLDGRGK----IIKHKNLTIIDDTYNANP 57 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 S K AI LS + +G++I VLGDM E+G+ S+ H ++ + NI V+L G Sbjct: 58 TSTKTAIETLSDL----KGKKILVLGDMKELGKFSKEKHEEIGRYILNSNIDKVYLYGEE 113 Query: 411 V 411 V Sbjct: 114 V 114 >gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] Length = 482 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 91/388 (23%), Positives = 162/388 (41%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +LL+AIQ + + + G++IDSR +A F A++G DGH +I A+++GA + Sbjct: 5 ELLKAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQGA-IA 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V+ DM I V D A+ K+A SK ++ +TG+ GKTT +L Sbjct: 64 VLCEDMPEEPNP-DITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 I + N+I P+TL R+ ++ + E+ Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ + K+ N DD Sbjct: 183 SIAQQRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----RVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G ++D ++ + Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSP--KGITAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G G+ I V+G Sbjct: 350 ----ALVNVLNAIHDVLAGRGKVITVVG 373 >gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia typhi str. Wilmington] gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington] Length = 498 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 160/378 (42%), Gaps = 52/378 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+S +S+++ E FFA+KG + DG+DFI A+ GA LV+ I V Sbjct: 20 INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+DV AL + + +I++TG+ GK++ + ++K A IG+ Sbjct: 76 YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 135 Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188 I G + +P +D+ F +L E I +L H I Sbjct: 136 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T+ + HL E AK ++F + L +G LN D E +K +K I Sbjct: 196 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKFI 255 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298 + GK D Q+ K CS L G++++ + + I Y++ A N+L+ Sbjct: 256 -TVGKK--GDVQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 303 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + D I+ALS P +GR +R G +D Y+ P +++ A+ Sbjct: 304 AALTLYYTGFKFDEIIEALSKVKPVKGRMERI-----DGTNIFVD--YSHTPDALEKALI 356 Query: 359 VLSQISPHGEGRRIAVLG 376 L I PHG G+ + G Sbjct: 357 ELQNIKPHG-GKLSVIFG 373 >gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] Length = 488 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 167/391 (42%), Gaps = 60/391 (15%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 IG++P V+ I IDSRS+ P F IKG DGHD+ AV GA +VV ++ Sbjct: 16 IGVLPDQ-VSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 74 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + V D +G L AA+ T+I +TG+ GKT+ ++ + + Sbjct: 75 TIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 129 Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185 + A G+ N G+ A D + + + R +T V H Sbjct: 130 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 189 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236 IA+ T + HL +EE AK +F + LEK + LN DD++ E Sbjct: 190 GVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 246 Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294 + A+ ++++G K++NADF + C +M S +V + GI Y + Sbjct: 247 -RYAAMTPFPVWTYGLKNENADF---RAINCEYHDYM------TSFDVEMPEGI-YRVKM 295 Query: 295 NMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 N+L I ++L A +++ I+ + P +GR ++ L F ID Sbjct: 296 NLLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELPVQIF--ID-- 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ AI P+ +G+ I ++G Sbjct: 352 YAHTPDAIEKAIEAA---QPYKKGKLIFLVG 379 >gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYV 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ L K+ Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ DF+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 500 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D VDF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] Length = 482 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ L K+ Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ DF+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Rickettsia typhi] Length = 492 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 160/378 (42%), Gaps = 52/378 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+S +S+++ E FFA+KG + DG+DFI A+ GA LV+ I V Sbjct: 14 INGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNTVIDK----VI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+DV AL + + +I++TG+ GK++ + ++K A IG+ Sbjct: 70 YVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGLE 129 Query: 147 I-GVPLTLARMP--VDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IAV 188 I G + +P +D+ F +L E I +L H I Sbjct: 130 IFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIVS 189 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T+ + HL E AK ++F + L +G LN D E +K +K I Sbjct: 190 FTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKFI 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---------AQNMLM 298 + GK D Q+ K CS L G++++ + + I Y++ A N+L+ Sbjct: 250 -TVGKK--GDVQITKI-TCS--------LTGQNIDFIFNNIIYNLHTLIIGSFQASNLLI 297 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + D I+ALS P +GR +R G +D Y+ P +++ A+ Sbjct: 298 AALTLYYTGFKFDEIIEALSKVKPVKGRMERI-----DGTNIFVD--YSHTPDALEKALI 350 Query: 359 VLSQISPHGEGRRIAVLG 376 L I PHG G+ + G Sbjct: 351 ELQNIKPHG-GKLSVIFG 367 >gi|260463536|ref|ZP_05811735.1| Mur ligase middle domain protein [Mesorhizobium opportunistum WSM2075] gi|259030627|gb|EEW31904.1| Mur ligase middle domain protein [Mesorhizobium opportunistum WSM2075] Length = 434 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDVDFGIFE 166 T I +TGS GK+T +L L++ + TYA + ++N+ + +VD+ +FE Sbjct: 31 TFIGVTGSSGKSTVTALLGHILAAHRPTYARVLANTFNSLVSTLYKRMTQAGEVDYVVFE 90 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 G S + IR + +++PH+AV+T + H++ F +E +A K + L G LN Sbjct: 91 AGASGIDTIRPMAEMLQPHVAVVTMVRLEHVARFRTLENVAVEKRAMVSALRPDGLAVLN 150 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 DD + + A + G + + +FG ++ AD+++ Sbjct: 151 ADDPYVADMAAGA---GCRVV-TFGMAETADYRV 180 >gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 163/388 (42%), Gaps = 70/388 (18%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F +KG DGHDF AV+ GA +V ++ + +PV Sbjct: 24 ITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAEREL-----DVDVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V L AL+ L+ A + K +I ITG+ GKT+T M+ L K IG+ Sbjct: 79 IVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKRTGLIGTMY 138 Query: 145 NHIG---VPL------------TLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG +P+ T +M VD I E+ SH LG + H Sbjct: 139 MKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVS-SHALSLGRV----HGCDYD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236 IAV T + HL ++E AK+ +F L E LN DD ++FE + Sbjct: 194 IAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFEKVT 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +H I ++G NAD + + + QG S ++V + H+ ++ Sbjct: 254 A-AH------ISTYGIKNNADVMAKN---------ITITAQGTSFDLVTNKGTKHITMSL 297 Query: 297 LMTLGIVSILTADVDTAIKALSVFHP-----KEGRGKRYRCAL---NQGFFTLIDESYNA 348 + + ++L A V T I A F +E G R R L Q F ++D Y Sbjct: 298 VGQFNVYNVLAA-VATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVD--YAH 354 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P S++ +VL+ EG+ V+G Sbjct: 355 TPDSLE---NVLNTCRDMTEGKLFVVVG 379 >gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] Length = 484 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 49/375 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ ++ + F +KG +DGH + KGA ++V + D+ G + Sbjct: 23 VTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDI--KCGKQLV--- 77 Query: 87 GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D+ L +L + + K ++A+TG+ GKTTT + L+++ K C+G+ Sbjct: 78 -TDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCGCVGTAG 136 Query: 145 NHI----------GVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVR 183 N G P T+ R V D+ + E L + R R Sbjct: 137 NDTCSGELKPSQHGTP-TVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYRIGDE--R 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +A T + HL +E AK +F + T +N DD + + L + + Sbjct: 194 IAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTMCK---TAVINIDDEYGKRLAQEFSDIA 250 Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLG 301 + ++ NAD+ + + S+M V + K+ V + G + QN L + Sbjct: 251 V----TYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNSLCAIA 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +V+ L D+ KALS +GR + +G FT+I + + + A +K VLS Sbjct: 307 MVTALGFDMTECAKALSDLDGVDGRMN----VVYRGDFTVITDYAHTDDALIK----VLS 358 Query: 362 QISPHGEGRRIAVLG 376 + P +GR I V G Sbjct: 359 TLKPLTKGRLICVFG 373 >gi|330813730|ref|YP_004357969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486825|gb|AEA81230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 155 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 7/141 (4%) Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG + + +IDESYNANP SMK AI S + H + ++IA++GDM E+G+ Sbjct: 16 GRGNKIIKIIKGKKVHIIDESYNANPISMKNAIENFSLFNSHKK-KKIAIIGDMLELGQK 74 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM---DGLFLFIQSSL 441 S+ +H+++A++L+ I ++L G V+ + + L ++ S+ + LFL I + Sbjct: 75 SKFYHLEVAKILNKAEIDEIYLVGKEVVHIYNQLKKTKTCFISKDIVHFKSLFLKIAN-- 132 Query: 442 VDGDVVVVKSSNSCGFYRLIN 462 + + ++K SN G +L+N Sbjct: 133 -EKSIFLIKGSNGIGLNKLVN 152 >gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] Length = 521 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 111/401 (27%), Positives = 163/401 (40%), Gaps = 83/401 (20%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V ++ DSR + P F A++G DGH FI AV++GAG V+ IP Sbjct: 35 GEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVICE----------EIP 84 Query: 85 VFGVDD------VLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSI 133 G++D V A LA AARL + II +TG+ GKTTT +++T L++ Sbjct: 85 S-GIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNA- 142 Query: 134 KKTYACIGSYNNHIGVPL-TLA--RMPVD----------------VDFGIFELGM---SH 171 + +C +IG L T A +P+D VD G + M SH Sbjct: 143 -RGISC-----GYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSH 196 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 ++ + H +R AV T + P HL +E ASAK +F+ L G LN DD Sbjct: 197 ALMLKRV-HGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTPDGFAVLNRDDPA 255 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A+ + + IY S D L C + E+ G S + + H Sbjct: 256 APFMAAR---VLPEKIYCCSLSARQDTSL----ACGNSFFAEI--TGAS--IASSRVALH 304 Query: 292 MAQ----------------NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + NML + L D D +ALS+ EGR +R + + Sbjct: 305 FPETVVSIEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCS 364 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 G +D Y P ++ +S L + R I V G Sbjct: 365 GG-MAFVD--YAHTPDALFKVLSTLRDLKDE-HSRLIVVFG 401 >gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] Length = 460 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 8/292 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IA+TG+ GKTTTK+M L KT + S N L ++ V+ ++E + Sbjct: 106 VIAVTGTCGKTTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAV 165 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + G I+ + +P I +IT I HL +E AK E+ + + + GT+ LN DD Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADD 225 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + K K IY +G +NAD+Q + + + + K +V G G Sbjct: 226 D--NIKKISLEDFKGKIIY-YGVGENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYG 282 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N + + + +IK L F + + LNQ LI +++N N Sbjct: 283 VHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK-GLNQ--CQLIVDTWNIN 339 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 P S++A+I + +I+ + ++IA++G + +G+ S+ H + +++ Y++ Sbjct: 340 PTSLEASIKTMCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDL 389 >gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] Length = 482 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 159/395 (40%), Gaps = 49/395 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYV 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ L K+ Sbjct: 176 FMEVSSHSIAQKRISG--LKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ DF+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLCDFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R L G ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPL--GVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chitinophaga pinensis DSM 2588] gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis DSM 2588] Length = 488 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 140/352 (39%), Gaps = 52/352 (14%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + + VN +SIDSR++ AF AIKG H DGH FI A+ + Sbjct: 1 MKTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-NKLAVAARL---------RSKATIIAI 113 GA +++ +P DD+ L N A AA + K ++ + Sbjct: 61 GAAVIICE----------ELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGV 110 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMS 170 TG+ GKTT +L S ++ + + N IG VP T P + M Sbjct: 111 TGTNGKTTIATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHT-TPDAIHLNALLADMV 169 Query: 171 HLG-EIRFL---THLV-RPHIA-------VITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 G E F+ +H V + IA + + I HL +E K F+GL Sbjct: 170 DEGCEYVFMEVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGLP 229 Query: 219 KTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 T N DD + +AK + +KT+ ADF+ + E + + Sbjct: 230 TTAFALTNLDDKRGNVMLQNTRAKKQSYSLKTV--------ADFK----GKILENNLTGL 277 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + EV IG A N+L G +L D D ++ALS EGR Sbjct: 278 IMTVNEKEVHFRLIGEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGR 329 >gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] Length = 511 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 153/363 (42%), Gaps = 45/363 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VF 86 ++ +S+ + P+ F A++G DGH FI A+++GA V V + V + P Sbjct: 40 LTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGA--VAVVGEFVPEAFAERFPKASFV 97 Query: 87 GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V + AL LA A RLR +I ITG+ GKTTT ++ L++I + I Sbjct: 98 QVSNSRRALGILATIFHMNPARRLR----LIGITGTNGKTTTAFLVYHMLNAIGQETGLI 153 Query: 141 GSYNNHIG---VPLT------------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ G +P + L RM V + E+ SH E + L Sbjct: 154 GTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVS-SHALEQERVAGLSF- 211 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV T + HL E AK ++F+GL T N DD + A + A I Sbjct: 212 SIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRATALYNIDDPSGPAMVADTQACCI 271 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S+G+ ++A ++R E + + + + +V G A N+L G+ Sbjct: 272 ----SYGQREDAQIRMRIVGHSLEGLTLNIDGRFQRFPLV----GCFNAYNLLAAYGVGR 323 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + D D ++AL GR +R+ G ++D Y P +++ + + ++ Sbjct: 324 AMGLDPDLLLEALGRVPQIPGRFERF--TFEDGTTAIVD--YAHTPDALENVLRTIREVM 379 Query: 365 PHG 367 P G Sbjct: 380 PEG 382 >gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] Length = 485 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 30/366 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR IA F A+KG DGH FI A+++GA + V+ DM ++ ++ Sbjct: 23 ITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQGA-VAVLLEDMPNTLND-NVTYV 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ K+A K ++ +TG+ GKTT +L + + Sbjct: 81 QVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFREFGYKVGLLSTVC 140 Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVIT 190 N+I A P ++ M G E F+ +H + H A+ T Sbjct: 141 NYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFMECSSHAIHQHRIGGLDFTGAIFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL E +AK F+GL K N DD ++ + A TI ++ Sbjct: 201 NLTRDHLDYHKTFENYRNAKKMFFDGLSKHAFAITNADDKNGMIMVQNTKA----TIKTY 256 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + ADF+ + + E ++E+ GK + V IG N+L G +L Sbjct: 257 STKRMADFRAKILECHFEGMYLEI--DGKEVGV--QFIGKFNVSNLLAVYGAAKMLGKST 312 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D + ALS GR + + +GF ++D Y P +++ ++ + + + G Sbjct: 313 DEILLALSTLKSVNGRLEPIQSP--EGFTAIVD--YAHTPDALENVLTAIHDVLDNKGGH 368 Query: 371 RIAVLG 376 I V G Sbjct: 369 IITVCG 374 >gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromobacterium violaceum ATCC 12472] gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Chromobacterium violaceum ATCC 12472] Length = 493 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 35/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPV 85 + + DSR + P + F A +G + DG DFI A++KGA V+ + D A P Sbjct: 23 IKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAVLWDEADGFAWKAEWQAPN 82 Query: 86 FGVDDV-----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V ++ + A + L + +R T++ ITG+ GKT+ L A S + + A I Sbjct: 83 LAVPNLRERAGIVAAHVLGLPSR---DLTVVGITGTNGKTSISHWLAQAFSLLGQKAALI 139 Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHI 186 G+ N H+ PV V + E + +S G +F + V Sbjct: 140 GTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQFRVNGVEFAT 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T + HL +E +K ++F EGL+ +N DD+F L A Sbjct: 200 AVFTNLTRDHLDYHGSMEAYGESKKKLFFWEGLKHA---VINADDAFGRQLAAGIDPKQT 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + ++G + D + E + V +++V +G A N+L L + Sbjct: 257 RVV-TYGLEQG-DVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAANLLACLATLC 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + A ++ P GR + ++ L+ Y P +++ A++ LS+I Sbjct: 315 VNGVSLQDAAAVMARIQPARGRMQ----SVGGAHEPLVVIDYAHTPDALEKALATLSEIR 370 Query: 365 PHGEGRRIAVLG 376 P G GR V G Sbjct: 371 PAG-GRLFCVFG 381 >gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 500 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Laribacter hongkongensis HLHK9] gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9] Length = 491 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 161/393 (40%), Gaps = 49/393 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVFGV 88 ++ DSR + P + F A +G + DG ++I A+ +GA V + D ++P V Sbjct: 26 VTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNLPV 85 Query: 89 DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145 D+ +A + R T+I +TG+ GKT+ L A + + + A IG+ N Sbjct: 86 PDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTVGNG 145 Query: 146 ----------HIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTI 192 P+T+ R D + + +S G +F + V AV T + Sbjct: 146 FFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVFTNL 205 Query: 193 APAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 HL + + K +F +GL+ +N DD F L ++ A + ++ Sbjct: 206 TRDHLDYHGSMAAYGATKERLFHWQGLQHA---VINVDDQFGRELASRCTA---GQVITY 259 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HG------IGYHMAQNMLMTLG 301 G ++ D + + L+G +ME+ HG +G A N+L L Sbjct: 260 GL-EHGDVRPMA---------VHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLA 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + + A + L P RG+ R + +ID Y P +++ A+S L+ Sbjct: 310 VLCVNGVPLTQACRVLGQIQP--ARGRMQRVGGTREPLVVID--YAHTPDALEKALSTLA 365 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 I P G GR AV G + + D+AE Sbjct: 366 DIKPAG-GRLFAVFGCGGDRDRGKRPLMGDIAE 397 >gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 497 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 103/401 (25%), Positives = 166/401 (41%), Gaps = 46/401 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPV 85 + GI+ +S+ + AFFAIKG DGH+FI A++ GA ++ + + V S+ +I V Sbjct: 22 IEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYVESLKGKNITV 81 Query: 86 FGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 D+ LA+A+ K +IAITG+ GKTTT +L I Sbjct: 82 VLTDN---GRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAGYKVGVI 138 Query: 141 GSYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N +G + TL M D + E+ SH + ++ + + Sbjct: 139 GTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVS-SHAAD-QYRVYSTKF 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFE--LLKAKS 239 H + T + HL +E AK IFE ++ K +N DD + L K+ Sbjct: 197 HGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIYSINVDDEYGRRILDYLKN 256 Query: 240 H-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNML 297 H + I ++GK+ + DF++ ++ S E + K + + N+ Sbjct: 257 HLKVNDDKIITYGKT-SEDFKILDYR----LSLFETEFSYKYKDTLSKIKTKLRGVFNIY 311 Query: 298 MTLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 VS L D D H K +G R+ QGF +ID Y P +++ Sbjct: 312 NLSAAVSFLIKDGFDLKFLEEKALHLKPIKG-RFEVIEGQGFIVVID--YAHTPDALENI 368 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + L++I E R IAV G + + + AE LS Sbjct: 369 LKSLNEIK---ENRIIAVFGAGGNRDKTKRPLMGETAEKLS 406 >gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiobacillus denitrificans ATCC 25259] gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus denitrificans ATCC 25259] Length = 506 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 45/384 (11%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 +G+ P VN DSR AP + F A G DG DFI AV +GA V+ D Sbjct: 29 LGLAPGELVN----DSRRAAPGKVFVAYPGDARDGRDFIPQAVAQGADGVLWEADHYQWD 84 Query: 79 GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +L+IP GV + + ++A V +I +TG+ GKT+ + ALS++ + Sbjct: 85 PALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTNGKTSVAHWIAQALSALGRK 144 Query: 137 YACIGSYNNHIGVPLT----------LARMPVDVDF----------GIFELGM--SHLGE 174 A IG+ N G P T L P ++ G M S G Sbjct: 145 TAIIGTVGN--GFPSTGDTPAALTPALNTTPDAIELQQRLARYRGEGAVACAMEVSSHGL 202 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + R +AV+T ++ HL ++ A+AKA +F + + LN DD+F + Sbjct: 203 AQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFNWPDLEWAV-LNVDDAFGQR 261 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHM 292 L+ ++ + +G + A + + Q S Q+ M + LQ E+ +G Sbjct: 262 LEGETRP---ARVAGYGFQRGA--VVARGLQLS-QAGMHLALQTDWGDAEIDAPLLGRFN 315 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+L L + + +D A +AL+ P GR + L L+ Y+ P + Sbjct: 316 AANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQ----TLGGEAHPLVVVDYSHTPDA 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ ++ L +I+ G GR I V G Sbjct: 372 LEKVLATLREIA--GGGRLICVFG 393 >gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] Length = 482 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 159/388 (40%), Gaps = 39/388 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+AIQ I + G++IDSR I F A++G DGH +I A++KGA V Sbjct: 5 DLLKAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIEKGA--V 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 + + I V D A+ K A SK ++ +TG+ GKTT +L Sbjct: 63 AILCEEWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-----DFGIFELGMS 170 I + N+I P+TL R+ ++ + E+ Sbjct: 123 YDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R ++ + T + HL +E AK + F+ + K+ N DD Sbjct: 183 SIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEMPKSAFSLTNLDDR 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + E + + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R +G+ ++D ++ + Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSP--KGYTAIVDYAHTPD- 349 Query: 351 ASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL+ I G+G+ I V+G Sbjct: 350 ----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 500 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 159/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PNAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 500 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas mossii DSM 22836] Length = 483 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 41/391 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL+ I I V G+ DSR P F A+KG DGH +I +A++ GA Sbjct: 3 LQDLLKNIDVIEIKGEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALELGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124 +++ + S + I V D A K+A + ++ +TG+ GKTTT Sbjct: 63 VILHENKIDTS--NEGITYIKVKDSADAAGKIATHWYGDPSNNLKLVGVTGTNGKTTTAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVD-VDFGI---FELGM 169 +L + + + N+I P++L M + VD G F Sbjct: 121 LLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNMVDAGCEYAFMEVS 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 SH + ++ L + + T + HL + E AK F+ L T N DD Sbjct: 181 SHAIHQKRISGL-KFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQLPDTAFALTNIDD 239 Query: 230 S----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + KAK+ + ++ ADF+ R ++ + + +E+ GK ++V Sbjct: 240 KNGLVMLQNTKAKTSTYSVHSL--------ADFKARIIEKHFDGTAIEI--NGKELQV-- 287 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L G +L + A+ LS P GR + R + QGF ++D Sbjct: 288 QFVGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSS--QGFTAIVD-- 343 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ + + ++ G GR I V+G Sbjct: 344 YAHTPDALTNVLEAIHEV-LEGNGRVITVVG 373 >gi|218886345|ref|YP_002435666.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757299|gb|ACL08198.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 546 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 122/306 (39%), Gaps = 24/306 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DF 162 LR T+IA+TGS GKT+ K +L L T GS N +G+ + D F Sbjct: 173 LRLAPTVIAVTGSYGKTSVKHILAHVLGCYHPTLMTPGSINTPMGISRIIRERLTDAHRF 232 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG- 221 I E+G +G I L L P A+IT + PAH F + + AK E+ G Sbjct: 233 FIAEMGAYGIGSIERLCRLAPPDFAIITNVGPAHYERFKDLATVVRAKFELAHATVARGG 292 Query: 222 -----TIFLNYDDSF-FELLKA----KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 L YD + F A + + G + A+ +R + S Sbjct: 293 RVVLPAALLAYDHARDFAAANAGAVLRCAGADVNADAGAGGAGVAEPSVRVLDAGQDLSG 352 Query: 272 MEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGR 326 + +L Q + EV G H N+ + V + V +A+++L Sbjct: 353 IHARLLYQEQEYEVRAPIHGMHHVDNVALAFAAACGVGVEPQRVVSALRSLPQI------ 406 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R LID++YN+NP+ +A+ +L G+ R + V M E+G L Sbjct: 407 AHRLEVKPQPDGSVLIDDAYNSNPSGFASALDLLDLYRKSGQ-RGVLVTPGMVELGTLHD 465 Query: 387 SFHIDL 392 S H +L Sbjct: 466 SAHAEL 471 >gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] Length = 494 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 154/372 (41%), Gaps = 33/372 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLS 82 V G+S+DSR + P F A+ G G F+ A+++GAG V+ + ++ + Sbjct: 23 VTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGEDTARQALAGGT 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------EMLTIAL 130 +P+ V+D AL+ A AT++A+TG+ GKT+ + I Sbjct: 83 VPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQALGLDAANIGT 142 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185 + ++ +A S+ P+TL R+ + V E L + R +++ Sbjct: 143 TGVEGAFAAPSSHTTP--EPITLHRLLAEMAAAGVTHAAMEASSHGLAQRRLDGVMLK-- 198 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T HL + +E AKA +F L + GT +N DD +L ++ A G Sbjct: 199 AAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVERARARGQ 258 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K I G+ + QL+ + + + QG V IG A N+L G+V Sbjct: 259 KLIR-VGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLTAAGLVI 317 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A+ + L GR + N G +D Y P +++ A+ L Sbjct: 318 ACGAEPKAVFEVLPQLATVRGRMQLAATRTN-GATVFVD--YAHTPDAVETALRAL---R 371 Query: 365 PHGEGRRIAVLG 376 PH GR IA++G Sbjct: 372 PHVLGRIIAIVG 383 >gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] Length = 459 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 36/388 (9%) Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 G + I V +DD A R ++A+TG+ GKTTTK+M+ LS+ K Sbjct: 78 GCIVIRVSDIDDAYDAFIHFY---RQLFDIPVVAVTGTSGKTTTKDMIKHILSTWYKVEG 134 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 + S N + + L R+ + ++E + G+I + P+I +IT I HL Sbjct: 135 TVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCSHFLPNIGIITNIGIDHLE 194 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 ++ +AKAE+ + + GT+ LN DD E +K + I FG F Sbjct: 195 RCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDTSKCKGNIIYFGIDTPCLF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q + + L ++ G G H N L L + + A +ALS Sbjct: 252 QASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALAALAATHEMGIGITQAAQALS 311 Query: 319 VF-----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 F H + +G LNQ T+ID+++N N AS+KAA++ L +++ + +++A Sbjct: 312 SFKLLMNHCEIKKG------LNQA--TIIDDTWNINTASLKAAMNTLCELNQ--QHKKVA 361 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------------LSGFHVLALKDALP 419 ++G + ++GE S +H ++ ++++ +NI ++ L+GFH + Sbjct: 362 LIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSLNGFHGKVFQFEQT 421 Query: 420 RSIHVHYSETM-DGLFLFIQSSLVDGDV 446 ++ S+ + + L I+ S+ D D+ Sbjct: 422 EGVYELLSDILNEETTLLIKCSMFDYDI 449 >gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 500 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 483 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 165/385 (42%), Gaps = 36/385 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ + G P ++G+ DSR + F AIKG DG ++ A++ GA V Sbjct: 5 DILKGVNCEIKG-DPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + ++ G I V+D A+ K+A SK T+I +TG+ GKT+ ML Sbjct: 64 VTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG V ++ P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IAV T ++ HL +EE A K+++F+ + K+ ++ +N DD + Sbjct: 180 HSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFK-MAKSASV-INIDDKY 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ S A + ++G A + + + +VQ++ K E+ G Sbjct: 238 SSMMIESSKA----KVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGIF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + + +ALS K G+ + F+ +ID Y P Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFELVETGKDFYVIID--YAHTPD 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ +++ + + GR+I + G Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370 >gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] Length = 483 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 94/393 (23%), Positives = 157/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ I + GI+IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEK------PVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYA 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ L K Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R G ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRS--KDGVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + + G+G+ I V+G Sbjct: 344 --YAHTPDALTNVLNAIHGVL-EGKGKVITVVG 373 >gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae L20] gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 500 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L+ + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ + T SF K+ + F L+ K E SW +L + IG Sbjct: 261 PDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDESYN 347 N+L L + +L D+ I+ + +G R C ++Q L+D Y Sbjct: 314 VNNLLTALAGLLVLGHDLPKLIETAPLL---QGVAGRMECVVSQKNPQNRPLVLVD--YA 368 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H EG + G Sbjct: 369 HTPDALEKA---LQAARLHTEGELYCIFG 394 >gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] Length = 476 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 156/374 (41%), Gaps = 42/374 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G +ID R +AP F A +G +G DFI AV+ GA + VV V G++ I Sbjct: 18 LVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSGA-IAVVTRPGVTVEGAVHI-- 74 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D+ A +LA A AT +A+TG+ GKT+T EM A IG+ Sbjct: 75 -ASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHAASIGT--- 130 Query: 146 HIGVPLTLAR------MPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIA 187 +GV R P V F G+ G++HL G ++ T + A Sbjct: 131 -LGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLEVSAA 189 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDD----SFFELLKAKSHAL 242 T ++ HL + +AK +F E L TGT + DD +L +A+ + L Sbjct: 190 AFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARARGNRL 249 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + G + + + Q + G +V IG + A N L++ G+ Sbjct: 250 -----MTVGTRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGL 304 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V DV T + LS P GR +R A G +D Y P +++AAI+ L Sbjct: 305 VLATGGDVTTTLANLSRLQPVRGRLERAAIA-RSGAPVYVD--YAHTPDALEAAIAAL-- 359 Query: 363 ISPHGEGRRIAVLG 376 PH GR I V G Sbjct: 360 -KPHAGGRLIVVFG 372 >gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] Length = 460 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 8/292 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IA+TG+ GKTTTK+M L KT + S N L ++ V+ ++E + Sbjct: 106 VIAVTGTCGKTTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAV 165 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + G I+ + +P I +IT I HL +E AK E+ + + + GT+ LN DD Sbjct: 166 AAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADD 225 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + K K IY +G +N+D+Q + + + + K +V G G Sbjct: 226 D--NIKKISLEDFKGKIIY-YGVGENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYG 282 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N + + + +IK L F + + LNQ LI +++N N Sbjct: 283 VHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMK-GLNQ--CQLIVDTWNIN 339 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 P S++A+I + +I+ + ++IA++G + +G+ S+ H + +++ Y++ Sbjct: 340 PTSLEASIKTMCEIAKN--RKKIALVGSIDALGKNSRQLHQKVGDMICQYDL 389 >gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] Length = 459 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 36/388 (9%) Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 G + I V +DD A R ++A+TG+ GKTTTK+M+ LS+ K Sbjct: 78 GCIVIRVSDIDDAYDAFIHFY---RQLFDIPVVAVTGTSGKTTTKDMIKHILSTWYKVEG 134 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 + S N + + L R+ + ++E + G+I + P+I +IT I HL Sbjct: 135 TVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAPGDITYTCSHFLPNIGIITNIGIDHLE 194 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 ++ +AKAE+ + + GT+ LN DD E +K + I FG F Sbjct: 195 RCKTLQGYINAKAEMVSVIPEGGTLILNADD---EKIKTIDTSKCKGNIIYFGIDTPCLF 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 Q + + L ++ G G H N L L + + A +ALS Sbjct: 252 QASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQVYNALADLAATHEMGIGITQAAQALS 311 Query: 319 VF-----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 F H + +G LNQ T+ID+++N N AS+KAA++ L +++ + +++A Sbjct: 312 SFKLLMNHCEIKKG------LNQA--TIIDDTWNINTASLKAAMNTLCELNQ--QHKKVA 361 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------------LSGFHVLALKDALP 419 ++G + ++GE S +H ++ ++++ +NI ++ L+GFH + Sbjct: 362 LIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLANNIATECSLNGFHGKVFQFEQT 421 Query: 420 RSIHVHYSETM-DGLFLFIQSSLVDGDV 446 ++ S+ + + L I+ S+ D D+ Sbjct: 422 EGVYELLSDILNEETTLLIKCSMFDYDI 449 >gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] Length = 483 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 36/385 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ + G P + G+ DSR + F AIKG DG ++ A++ GA V Sbjct: 5 DILKGVNCEIKG-DPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 VV+ ++ G I V+D A+ K+A +K T+I +TG+ GKT+ ML Sbjct: 64 VVDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG V ++ P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IAV T ++ HL +EE A K+++F+ ++ I N DD + Sbjct: 180 HSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVI--NIDDKY 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ S A + ++G A + + + +VQ++ K E+ G Sbjct: 238 SSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGLF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + + +ALS K G+ + F+ ID Y P Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ + L + + GR+I + G Sbjct: 349 GIQNMMEALKE---YKAGRKILLFG 370 >gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 501 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 152/384 (39%), Gaps = 50/384 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR ++ + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT ++L + + Sbjct: 84 LDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK 238 + +AV T ++ HL +EE A AK +F L + LN DD E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQV-LNADDEVGREWLAKL 260 Query: 239 SHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +A+ + T SF K + F L+ K E SW L + IG Sbjct: 261 PNAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRL-------IGAFN 313 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L L + +L D+ I+ + GR + N L+ Y P + Sbjct: 314 VNNLLTALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDA 373 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ A L H EG + G Sbjct: 374 LEKA---LQAARLHTEGELYCIFG 394 >gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] Length = 484 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 42/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + P F AI+G DGH FI A+ GA VVV D+ G + V Sbjct: 23 IKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVVVTRDVPLPDG---VSVV 79 Query: 87 GVDDVLGALNKLAVAARLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V+D ++L++AA R+ + +I +TG+ GKT+ M+ L + Sbjct: 80 KVED-----SRLSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVKSILEQSGRKVGL 134 Query: 140 IGSYNNHIG-VPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHL--VRPH 185 IG+ N IG V L R + D GI ++ M L + R Sbjct: 135 IGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHSLALNRVAGCRFD 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I + T + HL S +++ +AK ++F + +G I N DDS+ LK K Sbjct: 195 IGIFTNLTEDHLDFHSNMDDYFAAKLKLF---QNSGLIATNVDDSYGVKLK---DMFVSK 248 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T+Y++G + A ++ S ++ + G V+ + G N L Sbjct: 249 TVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIPGRFSVYNALAAAAACYA 308 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D K L GR + + F +ID Y P ++ ++L + Sbjct: 309 MGVSADDISKGLQALKSVPGRFE--VLGTDTDFTVIID--YAHTPDGLE---NILKSVKD 361 Query: 366 HGEGRRIAVLG 376 +GR IA+ G Sbjct: 362 IAKGRVIALFG 372 >gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [NC10 bacterium 'Dutch sediment'] Length = 568 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 16/292 (5%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMP 157 A A R +I ITGS GKTTTK + L + N +G V + + Sbjct: 206 ATARMRRYPGEVIGITGSYGKTTTKFITAALLHGRYPVFKTPDGVNTTMGIVRVVREGLR 265 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D F + E+ GEIR + ++RP I ++T + HL F E IA AK E+ + L Sbjct: 266 DDHRFFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQHLERFGTPERIAEAKYELIDSL 325 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNA-DFQLRKWKQCSEQSWMEVQ 275 G +N DD L ++ G + +Y G+ + A + + S+ S V+ Sbjct: 326 PPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDERALGVRGKDVTLSSKGSAFRVE 385 Query: 276 L-QGKSMEVVHHGIGYHMAQNMLMTLGIVS--ILTADVDTAIKALSVFHPKEGRGKRYRC 332 G +M G+++ + T + + ++ ++AL+ P KR Sbjct: 386 TGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAAGVRALA---PAP---KRLEI 439 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G LID + NANP + A+ VLSQ G +I + + E+G++ Sbjct: 440 REEGGVIKLIDVA-NANPRGAQMALEVLSQFE---GGSKILITPGLVELGQI 487 >gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 483 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/389 (24%), Positives = 168/389 (43%), Gaps = 44/389 (11%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ + G P ++G+ DSR + F AIKG DG ++ A++ GA V Sbjct: 5 DILKGVNCEIKG-DPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + ++ G I V+D A+ K+A SK T+I +TG+ GKT+ ML Sbjct: 64 VTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG V ++ P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IAV T ++ HL +EE A K ++F+ + K+ ++ +N DD + Sbjct: 180 HSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFK-MAKSASV-INIDDKY 237 Query: 232 FELL----KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 ++ KAK GIK +++ +K+ L K +VQ++ K E+ Sbjct: 238 SSMMIESSKAKVLTYGIKD-FAYVMAKDIRNSLSGVK-------FKVQIEDKKEEISLKI 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L + + L + + +ALS K G+ + F+ +ID Y Sbjct: 290 PGIFSVYNALAAITVADFLGISLRSVREALSQVTVK---GRFELVETGKDFYVIID--YA 344 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ +++ + + GR+I + G Sbjct: 345 HTPDGIQ---NIMEALKEYKTGRKILLFG 370 >gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] Length = 484 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 156/377 (41%), Gaps = 51/377 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G +ID+R +AP F A +G +G D+I AV+ GA I ++ P Sbjct: 28 VTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGA------------IAIVARPEA 75 Query: 87 GVDDV--LGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 VD + A N + A+L ++ +A+TG+ GKT+T E+ + A Sbjct: 76 QVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELARQIWRMLGHNAA 135 Query: 139 CIGSYN-----NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHL 181 IG+ + + LT P V F G+ G++H G ++ T Sbjct: 136 SIGTLGVTTSVDQVSTGLT---TPDIVTFLANMAGLRREGVTHAAFEASSHGLDQYRTEG 192 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240 + T ++ HL ++ AK +F E + G+ + DDS+ E A++ Sbjct: 193 LPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWSEKAIARAT 252 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G++ + S G A QL +E++ +G +V IG + A N L Sbjct: 253 KRGLR-VLSVGVQGRA-LQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQAANALTAA 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISV 359 G+V D ++ L P RG+ R ++Q G +D Y P ++AAI Sbjct: 311 GLVIATGGDAARVMELLGRVQPV--RGRLERAVISQTGAPVYVD--YAHTPDGLRAAIEA 366 Query: 360 LSQISPHGEGRRIAVLG 376 L PH +GR I + G Sbjct: 367 L---RPHTKGRLITLFG 380 >gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] Length = 480 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 37/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G +ID+R +AP F A +G +G DFI AVQ GA VV + G++ I Sbjct: 24 VSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQAGATAVVARPEARVE-GAIHI--- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 D+ +LA +A+TG+ GKT+T E+ + A IG+ Sbjct: 80 ASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVT 139 Query: 145 ---NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + + LT P V F G+ G++H G ++ T + A Sbjct: 140 TSVDQVSTGLT---TPDIVTFLANMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAF 196 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL ++ AK +F E + G + DD + + + ++ G++ + Sbjct: 197 TNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWADDEWSDKVIQRATKRGLR-VL 255 Query: 249 SFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S G A LR + Q ++++++GK+ +V IG + A N L G+ Sbjct: 256 SVGVQGQA---LRLANRTPTQLGQTLDIEVEGKNYKVNLPLIGAYQAANALTAAGLAIAG 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D ++ L P GR +R G +D Y P ++AAI L PH Sbjct: 313 GEDAGKVLELLGRVQPVRGRLERA-VITKAGAPVYVD--YAHTPDGLRAAIEAL---RPH 366 Query: 367 GEGRRIAVLG 376 GR IA+ G Sbjct: 367 TRGRLIALFG 376 >gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] Length = 487 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 146/375 (38%), Gaps = 49/375 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR I+ Q+ F AIKG DGH FI AV GA +VV + S IP Sbjct: 24 IKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGANVVV-----CEELPSEVIPEV 78 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126 V LAV A + +I +TG+ GKTT +L Sbjct: 79 SYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTSLLYQMFKTLGYKVGLIS 138 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 T+ + K Y + + + + L M V V+F E+ + + R L + Sbjct: 139 TVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVSSHGIAQHRTLG--LNFE 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241 V T ++ HL + K F+ L K G N DD + KAK+ Sbjct: 197 GGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSKKGFALTNVDDKNGNYMLQNTKAKTFG 256 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+K + D++++ E+S+ ++L EV IG A N+L Sbjct: 257 YGVKNL--------TDYKVK----ILEKSFSGLKLNINGTEVWSRFIGDFNAYNLLAVYA 304 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L ++ LS P EGR + + + G ++D Y P +++ + + Sbjct: 305 VADLLEVKDIENLQNLSQLKPVEGRYQHHMSS--TGIHVIVD--YAHTPDALQNVLQTTN 360 Query: 362 QISPHGEGRRIAVLG 376 I E I V+G Sbjct: 361 DIRSRSE-ELITVVG 374 >gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] Length = 848 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 146/358 (40%), Gaps = 30/358 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGV 88 + DSR I + F A +G + DG D+I AV GAG V + D +P + Sbjct: 60 LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRPEWDVPNQAI 119 Query: 89 DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143 D+ LA A + II +TG+ GKT+ + L A L ++ A +G+ Sbjct: 120 PDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIVGTV 179 Query: 144 NNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 N L TL R + +S G ++ + AV Sbjct: 180 GNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRTAVF 239 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK-SHALGIKT 246 T + HL +EE + KA +F +GL+ +N DD+F + L A+ + Sbjct: 240 TNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNA---VINTDDAFGQQLCAELKRSESSLH 296 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +YS+G ++ AD ++ ++ + ++V S +G AQN LG + Sbjct: 297 VYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAG 356 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D A+ ALS P G R C + +G L+ Y P +++ A++ L +I Sbjct: 357 GYDFQAALNALSHIRPATG---RMDCIIGEG-KPLVVVDYAHTPDALEKALATLREIK 410 >gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] Length = 482 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 167/392 (42%), Gaps = 43/392 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + + G++IDSR + + F A++G DGH +I A+QKGA Sbjct: 3 LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62 Query: 67 LVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 ++ + + VA I + V D A+ K+A S+ ++ +TG+ GKTT Sbjct: 63 AILCEDIPEEPVAGITYIQ-----VKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFE 166 +L I + N+I P+TL R+ + D G +F Sbjct: 118 IATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFM 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH + ++ L + + T + HL +E AK + F+ + K N Sbjct: 178 EVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGR----VIESHFEGMLLDFNNHELAVQ 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L G +L + + ALS HP GR R +G ++D ++ Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVDYAH 346 Query: 347 NANPASMKAAISVLSQISP--HGEGRRIAVLG 376 + A ++VL+ I G+G+ I V+G Sbjct: 347 TPD-----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 485 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 147/371 (39%), Gaps = 41/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + F A+KG DGH +I AV+KGA V V + + + + Sbjct: 25 ITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEKGA--VAVVCEAWPEVQAEGVTYV 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ +LA SK +I +TG+ GKTT +L + Sbjct: 83 QVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVC 142 Query: 145 NHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186 N+I P+TL R+ G + +H V H Sbjct: 143 NYIDDEAVPTEHTTPDPITLNRL-----LGRMADEGCKYAFMEVSSHAVAQHRIAGLKFA 197 Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + T + HL E AK F+GL K N DD ++ + A+ +K Sbjct: 198 GGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNVDDRNGMIMVQNTKAV-VK 256 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T YS + ADF+ + ++ E ++V GK + V IG N+L Sbjct: 257 T-YSLRAA--ADFKAKVLEESFEGMCLDV--NGKEVSVPF--IGRFNVSNLLAVYAAAVC 309 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + ALS P GR + R +G ++D Y P ++ +S +++I Sbjct: 310 MGRGAEDVLVALSTLRPVNGRFETIRS--KEGVTAIVD--YAHTPDALVNVLSTVNEILK 365 Query: 366 HGEGRRIAVLG 376 G I V G Sbjct: 366 R-RGEVITVCG 375 >gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 482 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 167/392 (42%), Gaps = 43/392 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + + G++IDSR + + F A++G DGH +I A+QKGA Sbjct: 3 LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62 Query: 67 LVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 ++ + + VA I + V D A+ K+A S+ ++ +TG+ GKTT Sbjct: 63 AILCEDIPEEPVAGITYIQ-----VKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFE 166 +L I + N+I P+TL R+ + D G +F Sbjct: 118 IATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFM 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH + ++ L + + T + HL +E AK + F+ + K N Sbjct: 178 EVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 237 LDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGR----VIESHFEGMLLDFNNHELAVQ 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L G +L + + ALS HP GR R +G ++D ++ Sbjct: 289 FIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSP--KGVTAIVDYAH 346 Query: 347 NANPASMKAAISVLSQISP--HGEGRRIAVLG 376 + A ++VL+ I G+G+ I V+G Sbjct: 347 TPD-----ALVNVLNAIHGVLEGKGKVITVVG 373 >gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] Length = 482 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 95/395 (24%), Positives = 160/395 (40%), Gaps = 49/395 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + LL+AIQ + + GI+IDSR + + F A++G DGH +I A++KGA Sbjct: 3 LNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 + V+ DM PV G V D A K+A SK ++ +TG+ GK Sbjct: 62 VAVLCEDMPEE------PVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFG 163 TT +L I + N+I P+TL R+ + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGCKYA 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ + + R ++ + T + HL +E AK + F+ + K Sbjct: 176 FMEVSSHSIAQKRISG--LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFS 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD ++ + + +Y++ ++F+ R E + + L + E+ Sbjct: 234 LTNLDDKNGLVMTQNTRS----KVYTYSLRSLSNFKGRVL----ESHFEGMLLDFNNHEL 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L G +L + + ALS HP GR R +G ++D Sbjct: 286 AVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSP--KGVTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 344 YAHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] Length = 479 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 170/387 (43%), Gaps = 53/387 (13%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS- 80 +P V G+S+DSRS+ +AFFA+ G G + AV++GA L+VV A + + Sbjct: 1 MPDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGA-LIVVYDSSGAGVRAP 59 Query: 81 -----LSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALS 131 ++PV + LG ++AAR + +IA+TG+ GKT+ + AL Sbjct: 60 EPGLGFAVPVRDLGRHLG-----SIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQ 114 Query: 132 SIKKTYACIGSYNNHIGVPLTLARM----PVDVD------------FGIFELGMSHLGEI 175 T A IG+ G+P L R+ P ++ F + L S G+ Sbjct: 115 PDHPT-AVIGTLG--WGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQA 171 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE 233 + + V A+ T I HL+ E +AK + LE + + DD + Sbjct: 172 QGRINGVHCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALE---FVAVTLDDPSVD 228 Query: 234 LLKAKSHALGIKTI-YSFGKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +S G+K I YS G ++ DF ++ +Q E ++V G+++E+ G Sbjct: 229 AI-LRSVPAGVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYG 287 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A+N+L TL ++ L + A + P GR +R+R G ++D Y Sbjct: 288 DFNAENLLGTLAVLVGLGYPAEAAASRVGRVRPVPGRMERFR---ENGLTVIVD--YAHT 342 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ +VL+ + H R V G Sbjct: 343 PDALR---NVLTSLRRHCRERLWVVFG 366 >gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] Length = 484 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 146/379 (38%), Gaps = 57/379 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI +DSR + F A+KG DGH +I A++KGA +V T + + + Sbjct: 23 IAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKGASAIVCET--LPDTLNEHVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ KLA SK ++ +TG+ GKTT +L + + Sbjct: 81 RVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I P+TL R+ + E + +G ++F Sbjct: 141 NYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSVAQKRIGGLKFAG---- 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239 + T I HL E AK F+ L KT N DD + KAK Sbjct: 197 ---GIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKTAFALTNADDKNGSVMVQNTKAKI 253 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++T+ +F+ + + E M++ + EV IG A N+L Sbjct: 254 ATYSLRTL--------CEFKGKVLEDGFEGMLMDIN----NREVNVQFIGRFNASNLLAV 301 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G +L + + LS P GR R +G+ ++D ++ + A ++V Sbjct: 302 YGAACLLGKQPEDVLLILSTLRPVAGRFDALRS--KKGYTAIVDYAHTPD-----ALVNV 354 Query: 360 LSQISP--HGEGRRIAVLG 376 L+ I G GR I V+G Sbjct: 355 LNAIHEVLKGRGRVITVVG 373 >gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879] gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879] Length = 494 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 24/302 (7%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A NKL L+ IIAITGS GKT+ K + L YA S N + G+ + Sbjct: 154 AHNKLQQLQNLK----IIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVADI 209 Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + + + I E G +G+I+ + L++ H AVI I AH+ F IE K E Sbjct: 210 NQNINATHEIYIAEAGARQVGDIKEIAELLQHHYAVIGKIGHAHIEYFKNIETTTKTKFE 269 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + T F+ D+S+ +L + A +K I ++ +L+ + E++ Sbjct: 270 LLYSTRLTHA-FVQKDNSYANVLPPQFEA-NMKKIVAYPP------KLKDIESTLEKTSF 321 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++L + +G N+ + + I L D++ KA++ P R +R Sbjct: 322 SLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAKLTPIPHRLQRIDT 381 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A +ID+S+N N M AI + S GR+I V + E E S +I+L Sbjct: 382 AQK----VIIDDSFNGNLEGMSEAIRLASL----HNGRKIIVTPGLVEHDEAS---NIEL 430 Query: 393 AE 394 A+ Sbjct: 431 AQ 432 >gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho melanesiensis BI429] gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429] Length = 511 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 20/300 (6%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R ++AITGS GKT+TK L +S KT GSYN +G+ + R +D + Sbjct: 165 RLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGIT-KVIREKLDKSHDV 223 Query: 165 FELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 F + ++ F L LV P I+VIT+I H F I + + Sbjct: 224 FIVELAENDNYGFEKLLDLVNPTISVITSIGIQHFEEFENESNILDNFKKYIKDSRSGKK 283 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQL-QGKS 280 +N+DD + + K I S G ++K A +++ K + S ++ + Sbjct: 284 FVVNFDD------ENIRKIIKNKDIISCGIENKEAQYRIVDLKLDKDGSNFVLETPNNQK 337 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFF 339 E + G ++L+ + L V+ I +A ++ PK + Sbjct: 338 FEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPKHRLE-----VIRDDTI 392 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T+ID+++N+NP K A+ LS G+ R+I + E+GE H L +++S Y Sbjct: 393 TVIDDTFNSNPKGFKMALEYLSLF---GKRRKILITPGFVELGEKEDEEHYKLGKLISKY 449 >gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] Length = 500 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 156/365 (42%), Gaps = 34/365 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G +ID R +AP F A +G +++ DFI A++ GA +V ++ G+L I Sbjct: 22 VTGFAIDHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAKVE-GALHI--- 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 ++ +LA + TI+A+TG+ GKT+T EM + A IG+ Sbjct: 78 ASEEPRRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWRMCGERAASIGTLGVT 137 Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + + LT P V F G+ G++H+ G ++ +R Sbjct: 138 TPDGSVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLRVKAGAF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL ++ AK +F E +E+ G I + + +A HAL K + Sbjct: 195 TNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRAIEHALSRK-L 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + DF ++ ++ ++V+ G+S +V IG + A N L++ G+ Sbjct: 254 HVLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANALVSAGLAIAT 313 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A A+ P GR +R C G ID Y P +++AAI+ L PH Sbjct: 314 GAAPAQVFDAIGRLQPVRGRLERA-CLTASGAPVYID--YAHTPDALEAAIAAL---RPH 367 Query: 367 GEGRR 371 +G + Sbjct: 368 VDGEK 372 >gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] Length = 508 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 93/407 (22%), Positives = 170/407 (41%), Gaps = 60/407 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83 ++G++ S+ + P+ FFA+ G +DGHDFI A+QKG+ ++V + DM ++ + + Sbjct: 28 ISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRDMDFYSPNVTYIKV 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130 F + + + + + K +I +TG+ GK++ + + L Sbjct: 88 DDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146 Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLV 182 S IK Y S + L L+ M +V + I E SH +++ + Sbjct: 147 FFDDGNGSLIKNPYR--QSTPESTEIHLFLSNMVKNNVQYAILE-STSHGLDLKTARLID 203 Query: 183 RPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240 + AV+ T I HL I+ +AK +F + + G +N+DD ++ K + Sbjct: 204 VNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSDFK---N 260 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------- 292 A+ YS KS ADF + S+++ ++ E H G+ Y Sbjct: 261 AVKKSFTYSL-KSSKADFFV---------SFIDEKIDSTRFEFYHKGVKYFANVSLLGSF 310 Query: 293 -AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +N++ L +VS IL +D+ + L +GR L Q F +ID Y P Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--SVNLGQNFSVIID--YAHTP 366 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + + + + + R I+V G E + +A++ S Sbjct: 367 GAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQIADIYS 410 >gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] Length = 484 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 157/388 (40%), Gaps = 45/388 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN + H+L Q Q H+ V G+SI+S+++ ++ FF IKG + DG+DFI A Sbjct: 1 MNIINMSHNLKQLFQQHN--------VKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDA 52 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA LV+ + I V V DV AL + ++ +IA+TG+ GK+ Sbjct: 53 LSKGAVLVITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKS 108 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----V 160 + + S + K A IG+ I VP L+ ++ + + Sbjct: 109 SVVSYIAQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGI 168 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219 ++ +FE L + R ++ +IA T+ + HL E AK ++F L Sbjct: 169 EYLVFEASSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLP 226 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G LN D E +K H IK I + GK D ++ + + + + Sbjct: 227 NGIAILNSDIEEIEFVKDYLHNHNIKFI-TVGKK--GDLEITRINGSLKGQNINFTFNNR 283 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 IG A N+L+ + + D I +L +GR +R N F Sbjct: 284 EYNFNTPIIGSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERID---NTHIF 340 Query: 340 TLIDESYNANPASMKAAISVLSQISPHG 367 Y P ++ A++ L I G Sbjct: 341 V----DYAHTPDALAKALTELKNIKLRG 364 >gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 483 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 36/385 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ ++ G P ++G+ DSR + F AIKG DG ++ A++ GA V Sbjct: 5 DILKGVKCEIKGD-PNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + ++ G I V+D + K+A SK T+I +TG+ GKT+ ML Sbjct: 64 VADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG V ++ P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IA+ T ++ HL +EE A K+++F+ ++ I N DD + Sbjct: 180 HSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVI--NIDDKY 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ S A + ++G A + + + +VQ++ K E+ G Sbjct: 238 SSMMIESSKA----KVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + + +ALS K G+ + F+ ID Y P Sbjct: 294 NVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ +++ + + GR+I + G Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370 >gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168] gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus subtilis subsp. natto BEST195] gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] Length = 494 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 106/388 (27%), Positives = 163/388 (42%), Gaps = 70/388 (18%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F +KG DGHDF AV+ GA +V ++ +++PV Sbjct: 24 ITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREV-----DVNVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V L AL+ L+ A + K +I ITG+ GKT+T M+ L K IG+ Sbjct: 79 IVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKRTGLIGTMY 138 Query: 145 NHIG---VPL------------TLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG +P+ T +M VD I E+ SH LG + H Sbjct: 139 MKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVS-SHALSLGRV----HGCDYD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236 IAV T + HL ++E AK+ +F L E LN DD ++FE + Sbjct: 194 IAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFEKVT 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +H I ++G +AD + + + QG S ++V + H+ ++ Sbjct: 254 A-AH------ISTYGIKNDADVMAKN---------ISITAQGTSFDLVTNKGTKHITMSL 297 Query: 297 LMTLGIVSILTADVDTAIKALSVFH-----PKEGRGKRYRCAL---NQGFFTLIDESYNA 348 + + ++L A V T I A F +E G R R L Q F ++D Y Sbjct: 298 VGQFNVYNVLAA-VATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVD--YAH 354 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P S++ +VL EG+ V+G Sbjct: 355 TPDSLE---NVLETCRDMTEGKLFVVVG 379 >gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] Length = 487 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 97/403 (24%), Positives = 164/403 (40%), Gaps = 48/403 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I +DSR + FF IKG DGHDF AV+KGA ++ + + + +P V Sbjct: 27 IEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEKGAVALIAERE----VKGVEVPTIIVQ 82 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D + +LA SK +I +TG+ GKTT +L ++ K IG+ I Sbjct: 83 DTKRTMARLANLFYGDPTSKMNLIGVTGTNGKTTVTHLLEQIMNDANKRTGLIGTMYTKI 142 Query: 148 G---------VP--LTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVI 189 G P +TL + + DV+ + E+ HLG +R IAV Sbjct: 143 GDVELKTQNTTPESITLQKRFKEMVDADVETALMEVSSHALHLGRVRGCDF----DIAVF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDD-SFFELLKAKSHALGI 244 T + P HL +E AK +F L T LN DD + ELLK + Sbjct: 199 TNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGKVAVLNRDDEAADELLK-----MTT 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + ++G AD + + + ++ +S+E+ IG N L Sbjct: 254 VDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESIEIEMKLIGMFSVYNALAAASAAI 313 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ K+L H GR + Q + ++D ++ ++ +VL+ + Sbjct: 314 ASGIPLEQIKKSLEAVHGVAGRFEPVDAG--QDYTVIVDYAHTSDSLE-----NVLTTVR 366 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 +G+ V+G C G+ ++ +AE+ + Y + ++ S Sbjct: 367 EFAKGKISVVVG--C-GGDRDRTKRPVMAEIATKYADNAIFTS 406 >gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter sp. X514] gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X514] gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 483 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 36/385 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ ++ G P ++G+ DSR + F AIKG DG ++ A++ GA V Sbjct: 5 DILKGVKCEIKG-DPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAV 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + ++ G I V+D + K+A SK T+I +TG+ GKT+ ML Sbjct: 64 VADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG V ++ P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IA+ T ++ HL +EE A K+++F+ ++ I N DD + Sbjct: 180 HSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVI--NIDDKY 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ S A + ++G A + + + +VQ++ K E+ G Sbjct: 238 SSMMIESSKA----KVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + + +ALS K G+ + F+ ID Y P Sbjct: 294 NVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ +++ + + GR+I + G Sbjct: 349 GIQ---NIMEALKEYKTGRKILLFG 370 >gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] Length = 486 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 40/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+ G DG DF AV KGA ++ + +G +PV Sbjct: 19 IAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---VPVV 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +D A + A + A +A+TG+ GKT+ + + A +G+ Sbjct: 76 RSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMGT---- 131 Query: 147 IGVPLTLARMP---------VDVDFG--------IFELGMSHL-------GEIRFLTHLV 182 +GV ++ A P D G + ++G++HL G + V Sbjct: 132 LGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDGV 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHA 241 + A T HL +E +AK +F+ L G T LN D F + + Sbjct: 192 KLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAVT 251 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G ++++S G+ + + + Q + V+ QG++ ++ G A N+L+ G Sbjct: 252 SG-QSVFSVGEDGQGLRLISRTPTPAGQDLV-VEAQGRTYDIRLPLAGAFQASNVLVAAG 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + DV +KAL GR +R + G +D Y P ++ +VL Sbjct: 310 LCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGG-EAYVD--YAHTPDGLQ---TVLE 363 Query: 362 QISPHGEGRRIAVLG 376 + PH G+ IAV G Sbjct: 364 ALRPHTRGKLIAVFG 378 >gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 498 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 159/374 (42%), Gaps = 48/374 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + + F IKG ++D H I +Q+ G V + +M + +P+ V Sbjct: 30 IESDSRGLKERNLFICIKGTNFDSH-LIARELQR-KGAVALVAEMPIEDEEVVVPIVYVK 87 Query: 90 D--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 ++ AL + K T I +TG+ GKTT ++ LSS ++ + IG+ N + Sbjct: 88 SSRLVEALLTMEEYCHPYRKLTTIGVTGTNGKTTITTLIYHVLSSFERKASLIGTVRNVV 147 Query: 148 GV------------PLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185 G P+ LA++ + ++ I E L M+ + +RF Sbjct: 148 GENIYTNPKNTTPGPVELAKLLQLSTKLKSEYFIMEVSSHSLSMNRVEGMRF-------D 200 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +I+ + HL ++ +K ++F L+ G +N D + + + Sbjct: 201 VGIISNVTRDHLDFHPTFDDYYRSKMKLFSLLKTNGIAVVNGDKINIADIHISRNRI--- 257 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGI 302 T Y FG +D+++ ++ M+ +Q G S + IG H A N+ + Sbjct: 258 TTYGFGDE--SDYRIENLDIS--RTGMDFTIQTPYGSSHRIYSRLIGEHNAYNIAAAVAA 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ L D+D KA+S F GR + A GF ++D + P +++ + + Sbjct: 314 LNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVVD--FAHTPDALEKLLKTARR 371 Query: 363 ISPHGEGRRIAVLG 376 ++P GR I V G Sbjct: 372 LTP---GRLILVFG 382 >gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 497 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 167/399 (41%), Gaps = 52/399 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPV 85 V GI+ +S+ + AFFAIKG DGH+FI A++ GA ++ + + + S+ +I V Sbjct: 22 VEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYIESLKGKNITV 81 Query: 86 FGVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 D+ LA+A+ K +IAITG+ GKTTT +L I Sbjct: 82 VLTDN---GRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAGYKVGVI 138 Query: 141 GSYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N +G + TL M D + E+ SH + ++ + + Sbjct: 139 GTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVS-SHAAD-QYRVYSTKF 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFE--LLKAKS 239 H + T + HL +E AK +FE ++ K +N DD L K+ Sbjct: 197 HGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIYSINVDDEHGRRILDYLKN 256 Query: 240 H-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H + I ++GK+ + DF++ ++ ++ + + ++ G N+ Sbjct: 257 HLKVNDDKIITYGKT-SEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRGVFNIYNLSA 315 Query: 299 TLGIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 T VS L D D H K +G R+ QGF +ID Y P +++ + Sbjct: 316 T---VSFLIKDGFDLKFLEEKALHLKPIKG-RFEVIEGQGFIVVID--YAHTPDALENIL 369 Query: 358 SVLSQISPHGEGRRIAVLG-----DMCE---MGELSQSF 388 L++I E R I V G D + MGE ++S Sbjct: 370 KSLNEIK---ENRIITVFGAGGNRDKTKRPLMGETAESL 405 >gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis NCTC 9343] gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteroides fragilis NCTC 9343] Length = 485 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + F A+ G DGH +I AV+KGA ++ ++ A + + Sbjct: 23 ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K A SK ++ +TG+ GKTT +L I + Sbjct: 81 QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ + E+ + + R +R + Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LRFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AK + F+ + K N DD ++ + + +Y Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ +DF+ R E + + L + E+ IG A N+L G +L Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366 + + ALS HP GR R QG+ ++D ++ + A ++VL+ I Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363 Query: 367 GEGRRIAVLG 376 G+G+ I V+G Sbjct: 364 GKGKVITVVG 373 >gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] Length = 483 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 98/390 (25%), Positives = 162/390 (41%), Gaps = 43/390 (11%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +LL+AIQ I + + G++IDSR + F A++G DGH +I A++KGA V Sbjct: 5 ELLKAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGA--V 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V + V I V D A+ K+A SK ++ +TG+ GKTT +L Sbjct: 63 AVLCEDVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG---VP------------LTLARMPVDVDFG---IFELG 168 I + N+I +P L L +M D G +F Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQM---ADSGCKYVFMEV 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + ++ L R + T + HL +E AK + F+ + K N D Sbjct: 180 SSHSIDQKRISGL-RFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + E + + L + E+ H I Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFK----GKILESHFEGMLLDFNNHELAVHFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R +G ++D ++ Sbjct: 291 GRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSP--KGITAIVDYAHTP 348 Query: 349 NPASMKAAISVLSQISP--HGEGRRIAVLG 376 + A I+VL+ I G+G+ I V+G Sbjct: 349 D-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 463 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 43 FFAIKGPHYDGHDFILH--AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 ++ + H +G D ++H AV++ N ++ A+ +L+IPV ++L Sbjct: 53 YYGHRPEHVEGADIVVHSTAVKQD------NVELQAA-RALNIPVIHRSEML-------- 97 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPV 158 ARL IA+TG+ GKTTT M+ A+ + + T+ +G +G + P Sbjct: 98 -ARLMDDRVGIAVTGAHGKTTTTSMIAFAMEQNGLDPTF-IVGGVVADLGDNAKAGKGP- 154 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217 F + + + FL + RP IAV+T + P HL ++ G E + A + Sbjct: 155 ------FVVAEADESDGSFLHY--RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQI 206 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G + ++ DD L++ + + ++G +++AD R + S +V + Sbjct: 207 PSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRSDVLVN 262 Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 GK + + + G H N L + + + + A ALS FH G +R++ Sbjct: 263 GKFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQVVAEV 319 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 G ++D+ Y +P ++A I+ GRRI Sbjct: 320 GDVLIVDD-YAHHPTEIRATIAAAKST-----GRRI 349 >gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] Length = 508 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 95/409 (23%), Positives = 173/409 (42%), Gaps = 65/409 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ I+G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKHIKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V + DM ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 IVCSRDMDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 125 MLTIALSS--------------------IKKTYACIGSYNNHIGVPLTLARMPVD-VDFG 163 + + L IK Y S + L L+ M + V + Sbjct: 128 YIYLLLKKKGIKVGFISTVFLDDGDGNLIKNPYR--QSTPESTEIHLFLSNMVKNKVQYA 185 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221 I E SH ++ + + AV+ T I HL I+ +AK +F + + G Sbjct: 186 ILE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAG 244 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N+DD ++ K +A+ YS KS ADF + S+++ ++ Sbjct: 245 FGVINFDDPYYSDFK---NAVKKSFTYSL-KSNKADFFV---------SFIDEKIDSTRF 291 Query: 282 EVVHHGIGYHM---------AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331 E H G+ Y +N++ L +VS IL +D+ + L +GR Sbjct: 292 EFYHKGVKYSANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--S 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 350 VNLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] Length = 508 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 97/426 (22%), Positives = 179/426 (42%), Gaps = 65/426 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ I+G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKHIKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V + DM ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 IVCSRDMDFYSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 125 MLTIALSS--------------------IKKTYACIGSYNNHIGVPLTLARMPVD-VDFG 163 + + L IK Y S + L L+ M + V + Sbjct: 128 YIYLLLKKKGIKVGFISTVFLDDGNGNLIKNPYR--QSTPESTEIHLFLSNMVKNKVQYA 185 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221 I E SH ++ + + AV+ T I HL I+ +AK +F + + G Sbjct: 186 ILE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAG 244 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N+DD ++ K +A+ YS KS ADF + S+++ ++ Sbjct: 245 FGVINFDDPYYADFK---NAVKKSFTYSL-KSNKADFFV---------SFIDEKIDSTRF 291 Query: 282 EVVHHGIGYHM---------AQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331 E H G+ Y +N++ L +VS IL +D+ + L +GR Sbjct: 292 EFYHKGVKYSANVSLLGSFNVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMD--S 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 L Q F +ID Y P + + + + + R I+V G E + Sbjct: 350 VNLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGERDVAKRFLQGQ 404 Query: 392 LAEVLS 397 +A++ S Sbjct: 405 IADIYS 410 >gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] Length = 462 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR I F A++G DGH +I A+ KGA V V + + I Sbjct: 3 ITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGA--VAVLCEELPEELKAGITYI 60 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K+A SK +I +TG+ GKTT +L + + Sbjct: 61 QVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVC 120 Query: 145 NHIG-----------VPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ ++ + E+ + + R ++ + Sbjct: 121 NYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISG--LKFAGGI 178 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AK + F+ L K N DD ++ + + +Y Sbjct: 179 FTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDKNGLVMTQNTRS----KVY 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ +DF+ + E + + L + E+ IG A N+L G +L Sbjct: 235 TYSLRSLSDFK----GKVLESHFEGMLLDFNNHELAVRFIGKFNAYNLLAVFGTAVLLGK 290 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366 + + ALS HP GR R +G+ ++D ++ + A ++VL+ I Sbjct: 291 KEEDVLVALSTLHPVTGRFDAIRSP--KGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 343 Query: 367 GEGRRIAVLG 376 G+G+ I V+G Sbjct: 344 GKGKVITVVG 353 >gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] Length = 482 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 162/387 (41%), Gaps = 37/387 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +LL+AIQ I + + G++IDSR + F A++G DGH +I A++KGA V Sbjct: 5 ELLKAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGA--V 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V + V I V D A+ K+A SK ++ +TG+ GKTT +L Sbjct: 63 AVLCEDVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDV-DFG---IFELGMSH 171 I + N+I P+TL ++ + D G +F SH Sbjct: 123 YNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVSSH 182 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + ++ L R + T + HL +E AK + F+ + K N DD Sbjct: 183 SIAQKRISGL-RFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKGAFSLTNLDDKN 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ + + +Y++ +DF+ + E + + L + E+ H IG Sbjct: 242 GLVMTQNTRS----KVYTYSLRSLSDFK----GKILESHFEGMLLDFNNHELAVHFIGRF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 A N+L G +L + + ALS P GR R +G ++D ++ + Sbjct: 294 NASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSP--KGITAIVDYAHTPD-- 349 Query: 352 SMKAAISVLSQISP--HGEGRRIAVLG 376 A I+VL+ I G+G+ I V+G Sbjct: 350 ---ALINVLNAIHGVLEGKGKIITVVG 373 >gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 488 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 39/303 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI DSR+ F AIKG +DG D+I AV++GA +VV ++ SI I V Sbjct: 23 VKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERGAVAIVVEREV--SIDK-DITVI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V++ +L K+A + +I +TG+ GKT+ M+ L S IG+ + Sbjct: 80 KVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSVTYMIKSILESQNNKVGLIGTIH 139 Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183 N IG P +L R+ VD V + + E L ++ + E +F Sbjct: 140 NMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECKF------ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 IAV T + HL ++E A+AKA++F + KT + +N DD + + S+A Sbjct: 194 -DIAVFTNLTQDHLDFHKTMDEYANAKAKLFR-MAKTACV-INIDDDYSSYMIENSNA-- 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++G A + K + + VQ++ E+ G N L + + Sbjct: 249 --KVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIPGLFSVYNSLAAISVA 306 Query: 304 SIL 306 IL Sbjct: 307 FIL 309 >gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] Length = 485 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 23/316 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + IS DSR + F I+G DGH++I A+QKGA ++++ + G I V Sbjct: 23 IEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAILIDKKISYKKGITYIRVN 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT----KEML----------TIALSS 132 V + + + K + K +I +TG+ GKT+T K++L TI + Sbjct: 83 NVKESMAIIGKNFFQNPCQ-KINLIGVTGTNGKTSTVSFIKQILGYDCKVGSIGTIEIYD 141 Query: 133 IKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 KKT I + + + L M + + + E+ SH + + + + AV T Sbjct: 142 GKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVS-SHALVLNRIDN-IDYEAAVFTN 199 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E +AK ++F KT +I N DD E KS IKT Y++ Sbjct: 200 LTQDHLDFHKTLENYKNAKEKLF---YKTKSINIFNIDDKVGEEFFNKSLNRDIKT-YTY 255 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G K ADF+ K +++ ++ + + +V +G N L + +L Sbjct: 256 GVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVYNTLAAITTCILLGLSR 315 Query: 311 DTAIKALSVFHPKEGR 326 + IK + GR Sbjct: 316 EDVIKRVQNLKSVSGR 331 >gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] Length = 491 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 33/373 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V+GI+ DSR + P+ F AI G DG FI A+Q+GA ++ D A++ I Sbjct: 23 VSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAIISTPDACAAVRQAGHDIA 82 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 DD AL+ +A A ++A+TG+ GKT+T E + A IG+ Sbjct: 83 CIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAAASIGTLG 142 Query: 145 -----------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + + LTL + VD E L + R V Sbjct: 143 IISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRL--DGVPLAA 200 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALG 243 A + + HL ++ +AK +F+ L G + + D + E L+A + G Sbjct: 201 AGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAIAVKRG 260 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G+S +A LR + Q ++V+ G EV G + NML+ G+ Sbjct: 261 LD-LRLVGESGDAIRLLRVTPRPDGQ-VLDVECNGTRHEVATRLPGRYQVDNMLLAAGLA 318 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + AI L GR + L G +D Y P +++ +L + Sbjct: 319 ASSRDMMSAAINCLPALVGVRGR-MEHAVTLPNGAAVYVD--YAHTPDALE---RLLLSL 372 Query: 364 SPHGEGRRIAVLG 376 PH GR +AV G Sbjct: 373 RPHASGRLVAVFG 385 >gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] Length = 493 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 162/391 (41%), Gaps = 60/391 (15%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 IG++P V I +DSRS+ P F IKG DGHD+ AV GA +VV ++ Sbjct: 21 IGMLPDQ-VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 79 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + V D +G L AA+ T+I +TG+ GKT+ ++ + + Sbjct: 80 TIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 134 Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185 + A G+ N G+ A D + + + R +T V H Sbjct: 135 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 194 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236 IA+ T + HL +EE AK +F + LEK + LN DD++ E Sbjct: 195 GVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 251 Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294 + A+ ++++G K++ ADF + C +M S +V + GI Y + Sbjct: 252 -RYAAMTPFPVWTYGLKNETADF---RAINCEYHDYM------TSFDVEMSEGI-YRVKM 300 Query: 295 NMLMTLGIVSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 N+L I ++L A V + I+ + P +GR ++ L F Sbjct: 301 NLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSDLPVQMFV----D 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ AI P+ +G+ I ++G Sbjct: 357 YAHTPDAIEKAIEA---AQPYKKGKLIFLVG 384 >gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] Length = 481 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 150/367 (40%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GI DSR + + F A +G DGH +I A++ GA + +V ++ + I +I Sbjct: 23 VSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENGA-VAIVCEELPSEINP-NITYV 80 Query: 87 GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIG 141 V+D AL K+A A +K T++ +TG+ GKTT +L + + + Sbjct: 81 KVEDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIATLLYQLFRELGHKSGLLSTVC 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189 +Y N + V T P + M G E F+ +H + H A+ Sbjct: 141 NYVNDLAVEATHT-TPDALALNALLAQMVDAGCEYAFMEVSSHSIDQHRISGLEFDGAIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I H+ E AK + F+ L N DD ++ S A Y+ Sbjct: 200 TNITRDHIDYHLTFENYLKAKKQFFDNLSTDAFALTNADDKNGLVMLQNSKA----KKYT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + ADF+ R + E M + + K + V IG A N+ G +L D Sbjct: 256 YSLRGMADFKTRILEHGFE--GMLLDMNDKEVNVSF--IGKFNASNLSAVFGAAVLLGQD 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +S H GR + G+ ++D Y P ++ I ++QI G G Sbjct: 312 ELEVLRIISSLHSVSGRFETLHSP--AGYTAIVD--YAHTPDALVNVIGTINQI-LQGNG 366 Query: 370 RRIAVLG 376 R I V+G Sbjct: 367 RLITVVG 373 >gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] Length = 490 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 48/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F +KG DGHDF AV+ GA +V ++ +S+PV Sbjct: 24 ITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAEREL-----DVSVPVT 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V + AL+ L+ A + + +I ITG+ GKT+T M+ L K IG+ Sbjct: 79 IVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGKRTGLIGTMY 138 Query: 144 --------------NNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + T +M + VD I E+ L R H IAV Sbjct: 139 IKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRV--HGCDYDIAV 196 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKAKS 239 T + HL ++E AK+ +F L EK LN DD +++E + A + Sbjct: 197 FTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAYYEKVTA-A 255 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 H I ++G +AD + K ++ + E+ + + +G N+L Sbjct: 256 H------ISTYGIKNDADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNVLAA 309 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +T +A+ H GR + NQ F ++D Y P S++ +V Sbjct: 310 VATCIAAGIPFETVAEAVEELHGVRGRFELVN--KNQEFPVIVD--YAHTPDSLE---NV 362 Query: 360 LSQISPHGEGRRIAVLG 376 L EG+ V+G Sbjct: 363 LKTCKDMTEGKVFVVVG 379 >gi|224437375|ref|ZP_03658347.1| hypothetical protein HcinC1_05382 [Helicobacter cinaedi CCUG 18818] Length = 492 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 55/322 (17%) Query: 95 LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LN+ V A+ + S+ II +TGS GKT+ K LT L + YA S N H G+ Sbjct: 148 LNRYIVLAKEKLDIMSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGI- 206 Query: 151 LTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +A + ++D+ I E G G+I ++ + PH AVI + HL F +E I Sbjct: 207 --VADINNNLDYTTEIYITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENI 264 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWK 264 K E+ + ++ F+ D+ LK ++ +AL K Y +N Sbjct: 265 VETKFELLQS-KRLKKAFVFKDN-----LKPQNLDNALAKKITYFPENVRN--------- 309 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIK 315 +E L+G S ++ + +L +V++ A V+ K Sbjct: 310 -------VEANLEGTSFDLFIKNEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQK 362 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A+ P R + + NQ +ID+ +N N MK AI ++S EGR+I V Sbjct: 363 AVKRIEPIPHRLNKIQT--NQKL--IIDDGFNGNLKGMKEAI----RLSSLYEGRKIIVT 414 Query: 376 GDMCEMGELSQSFHIDLAEVLS 397 + E ++ +I+LA+ + Sbjct: 415 PGIVES---TKEANIELAKAID 433 >gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] Length = 487 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 135/318 (42%), Gaps = 32/318 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI +DSR + F AIKG DGH FI AV+ GA VV + L++P Sbjct: 25 IRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVENGAAAVVGEEAL-----ELNVPYI 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D +L KLA R K II ITG+ GKTTT +L L + +T + +G+ + Sbjct: 80 KVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKTTTAYILKHILETAGRTCSLLGTVS 139 Query: 145 NHIG---------VP--LTLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N I P L + +M +D +F + E+ L + R T + + T Sbjct: 140 NIINNREYKTSNTTPDALQIQKMLSKSLD-EFVVMEISSHALEQSR--TEGLELDYGLFT 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 +A HL +++ K +IF L+ G +N +S+ E + I I Sbjct: 197 NLAHDHLDYHENMDQYFLDKKKIFTLLKDGGKGVINLYNSWGEKMAEDLQKEKIPLILL- 255 Query: 251 GKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 D Q K + ++ ++++G+S E+ G+H N M L Sbjct: 256 -----GDDQCCSIKDVAINGRTVFILEMKGQSFEIEFPLPGHHNVYNAAMAFLTGVDLGI 310 Query: 309 DVDTAIKALSVFHPKEGR 326 D IKAL+ F GR Sbjct: 311 DTADIIKALAGFPGIPGR 328 >gi|313143839|ref|ZP_07806032.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818] gi|313128870|gb|EFR46487.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818] Length = 490 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 55/322 (17%) Query: 95 LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LN+ V A+ + S+ II +TGS GKT+ K LT L + YA S N H G+ Sbjct: 146 LNRYIVLAKEKLDIMSRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGI- 204 Query: 151 LTLARMPVDVDFG----IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +A + ++D+ I E G G+I ++ + PH AVI + HL F +E I Sbjct: 205 --VADINNNLDYTTEIYITEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENI 262 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--HALGIKTIYSFGKSKNADFQLRKWK 264 K E+ + ++ F+ D+ LK ++ +AL K Y +N Sbjct: 263 VETKFELLQS-KRLKKAFVFKDN-----LKPQNLDNALAKKITYFPENVRN--------- 307 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIK 315 +E L+G S ++ + +L +V++ A V+ K Sbjct: 308 -------VEANLEGTSFDLFIKNEWHRFDTMVLGQFNVVNLSAAIYMGVELGLRVEEIQK 360 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A+ P R + + NQ +ID+ +N N MK AI ++S EGR+I V Sbjct: 361 AVKRIEPIPHRLNKIQT--NQKL--IIDDGFNGNLKGMKEAI----RLSSLYEGRKIIVT 412 Query: 376 GDMCEMGELSQSFHIDLAEVLS 397 + E ++ +I+LA+ + Sbjct: 413 PGIVES---TKEANIELAKAID 431 >gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 573 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 31/378 (8%) Query: 19 IGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +G PQ G V GI+ DSR++ P + + A+ G G DF A GA V+ + Sbjct: 73 LGAAPQESGDVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVAVLTDPAGAE 132 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134 + +PV +D G + +LA R A + I ITG+ GKTTT ++ L Sbjct: 133 RAAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAYLVEGGLRGAG 192 Query: 135 KTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185 ++ IG+ IG + P D M G + + V H Sbjct: 193 RSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRV 251 Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +AV ++P H+ SG+E+ AKA++F ++ +N+DD + L ++ Sbjct: 252 DGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-PRRSRLGVVNFDDEYGRRLIDEA 310 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLM 298 ++ + T + G +AD++ + + S V +G+ + G N L Sbjct: 311 -SVPVVTFSAEGH-PDADWRAADVEVGPQDSRFTVLGPKGERITARAPLPGPFNVANTLA 368 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 IV++ A VD A V G+ R Q + ++D ++ + A S Sbjct: 369 A--IVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVES 421 Query: 359 VLSQISPHGEGRRIAVLG 376 VL + EGR VLG Sbjct: 422 VLRSLRKVTEGRVHIVLG 439 >gi|289447785|ref|ZP_06437529.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX [Mycobacterium tuberculosis CPHL_A] gi|289420743|gb|EFD17944.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX [Mycobacterium tuberculosis CPHL_A] Length = 301 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 52/310 (16%) Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + PAHL F E IA KAE+ + + +G + LN DD + AK L + Sbjct: 3 NVGPAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAM-AK---LTAARVVRV 58 Query: 251 GKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEV-VHHGI-GYHMAQNMLMTLGIVSI 305 + D W E + L + V G+ G H N L + Sbjct: 59 SRDNTGDV----WAGPVSLDELARPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALE 114 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS- 364 A V+ AL+ P R + T+ID++YNANP SM+A + L+ I+ Sbjct: 115 CGASVEQVAAALTAAPPVSR--HRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAH 172 Query: 365 -PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 P R AVLG+M E+GE + + H + + ++S + + G RSI Sbjct: 173 QPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG---------RSIS 223 Query: 424 -VHYSETMDGLFLFIQSS-------------------------LVDGDVVVVKSSNSCGF 457 +H+ ++G + +++ L GDVV+VK+SN+ G Sbjct: 224 AMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLVKASNAAGL 283 Query: 458 YRLINLLLEE 467 + + L+ + Sbjct: 284 GAVADALVAD 293 >gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 492 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/327 (23%), Positives = 137/327 (41%), Gaps = 41/327 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ D+R + P F I G ++GH+ AVQKGA LVV + + + +PV Sbjct: 25 ITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAVLVVASEPL-----DVEVPVV 79 Query: 87 GVDDVLGALNKLAVA------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V++ + A+ LA A LR +I +TG+ GKTT +L K+ I Sbjct: 80 YVNNTMKAMAILAAAFYDYPSQNLR----VIGVTGTNGKTTVTHLLDYIFHDHKEKTGVI 135 Query: 141 GSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185 G+ IG + T P + M G ++ + V H Sbjct: 136 GTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENG-VQTCSMEVSSHSLVQGRVWGTDFD 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 IA+ T ++ HL +E+ A AK+ +F L +K LN+DD + K+ Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKFAILNFDDPVGRSFEEKT 254 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A +++S+G ++ADF+ + ++ + + + + EV +G N L Sbjct: 255 AA----SVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVYEVQLQLVGKFNVSNALAA 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326 + ++ + I++LS GR Sbjct: 311 IAGAYAAGLELPSVIQSLSQISGVRGR 337 >gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] Length = 493 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 39/378 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + G+++DSR + P F A+ G G +FI +A+++GAG ++ + A+ L+ Sbjct: 19 QANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTD----ATGARLAQ 74 Query: 84 PVFGVDDVL-----GALNKLAVAARL---RSKATIIAITGSVGKTT----TKEML-TIAL 130 + D LA AA L T+IA+TG+ GKT+ T+++ + L Sbjct: 75 DFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERMGL 134 Query: 131 SSIK-KTYACIGSYNNHIG----VPLTLARM-----PVDVDFGIFELGMSHLGEIRFL-T 179 +++ T G+Y+ +G P+TL RM V G E L + R Sbjct: 135 AAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGLAQRRLDGV 194 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238 HL+ A T HL + +E +AKA +F L + G +N DD + A Sbjct: 195 HLM---AAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGAEMAAI 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G + + + G++ AD +L + + + + + + ++ IG A+N+L+ Sbjct: 252 ATERG-QDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAENVLL 310 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V AD + + L GR + + G +D Y P ++ AI Sbjct: 311 AAGLVIGAGADAEQVFEVLPDMRTVRGR-MQLAATRDNGAAVFVD--YAHTPDAVATAIK 367 Query: 359 VLSQISPHGEGRRIAVLG 376 L PH GR IA++G Sbjct: 368 AL---RPHVMGRLIAIVG 382 >gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 526 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSH 171 ITGS GKTTTK + + +T A S+NN G+ + + DV+ + E+GM Sbjct: 183 ITGSFGKTTTKGYVAALVEGTYRTLATPASFNNRGGLARAINEHLTSDVEVFVAEMGMFG 242 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI L VRP I+VIT I P HL I AK EI +E + LN D Sbjct: 243 PGEIAELVSWVRPEISVITAIGPVHLERLGSEAAIVRAKLEI---VETARVVVLNVDYPR 299 Query: 232 FELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L G + + S AD ++ + EV + ++ + Sbjct: 300 LALAANALEQEGARRVVRVSAISLEADVAVKPNDEG------EVVVYAHGAKIAKAALAD 353 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-----FTLIDES 345 +A N+ + + L + + L P R L G ++D++ Sbjct: 354 VVAGNLACAVAVALELGVAPEDIAERLGRIKPAPNR-------LVAGVSPTSGVEVLDDT 406 Query: 346 YNANPASMKAAISVL 360 YNANP + A+ L Sbjct: 407 YNANPMGARRALDAL 421 >gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] Length = 490 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 154/368 (41%), Gaps = 32/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +S DSR +AP+ FFA+ G DG F A +KGA +V ASI PV Sbjct: 21 VAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKGAVAIVAEGKSAASI--EGAPVI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 V DV AL + A R TI+AITG+ GKT+ + ++ A +G+ Sbjct: 79 AVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAAFVRQLFAANGFAAASLGTLGVV 138 Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 N + LT P ++ G+ G++HL G + VR Sbjct: 139 APNGSVYGSLT---TPDPINLHETLDGLAASGVTHLALEASSHGLTQRRLDGVRLKAGAF 195 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL + + E +AK E+F+ L G ++ D + A A G+K I+ Sbjct: 196 TNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADSDVATEVIAACKARGLK-IF 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G SK +L + + + +EV +G+ ++ G N L+ G+ + Sbjct: 255 TVG-SKGESLKLLRATPKAAATGIEVAHEGRIYKLELPLAGAFQTSNALVAAGLAIVCGV 313 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + A+ AL H + G+ + G +D Y P +++ VL + P Sbjct: 314 SAERALTALE--HIEGAPGRLEKVGERNGAPIYVD--YAHKPDALE---KVLCALRPAVA 366 Query: 369 GRRIAVLG 376 GR + V G Sbjct: 367 GRLLVVFG 374 >gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] Length = 493 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 162/391 (41%), Gaps = 60/391 (15%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 IG++P V I +DSRS+ P F IKG DGHD+ AV GA +VV ++ Sbjct: 21 IGMLPDQ-VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 79 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + V D +G L AA+ T+I +TG+ GKT+ ++ + + Sbjct: 80 MIAQVIVKDTDRAVGLL-----AAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMG 134 Query: 135 KTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------- 185 + A G+ N G+ A D + + + R +T V H Sbjct: 135 EKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVSSHGLALGRLA 194 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLK 236 +A+ T + HL +EE AK +F + LEK + LN DD++ E Sbjct: 195 GVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE--- 251 Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQ 294 + A+ ++++G K++ ADF + C +M S +V + GI Y + Sbjct: 252 -RYAAMTPFPVWTYGLKNETADF---RAINCEYHDYM------TSFDVEMSEGI-YRVKM 300 Query: 295 NMLMTLGIVSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 N+L I ++L A V + I+ + P +GR ++ L F Sbjct: 301 NLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELPVQMFV----D 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ AI P+ +G+ I ++G Sbjct: 357 YAHTPDAIEKAIEA---AQPYKKGKLIFLVG 384 >gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] Length = 492 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 143/358 (39%), Gaps = 33/358 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCSDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD--- 309 S NAD ++ + S+ Q +G AQN+ G +++L A+ Sbjct: 266 SGNADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNL---AGCIALLCANGYP 322 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 323 FDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] Length = 479 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA L Sbjct: 3 HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V DV AL + + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D E +K H IK I K D ++ + + + + Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQIS 364 P +++ A++ L I Sbjct: 339 AHTPDALEKALTELKNIK 356 >gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] Length = 487 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 37/369 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V G++IDSR I F A+KG DGH +I A++ GA +++ DM G I Sbjct: 23 VTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIELGATAILLE-DMPQQYTEGITYIQ 81 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V +D +G K+A A ++ +TG+ GKTT +L + + + Sbjct: 82 VESTEDSVG---KVATAFYGNPSHHLILVGVTGTNGKTTIATLLYNMFRRMGHKCGLLST 138 Query: 143 YNNHI---GVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------A 187 N+I VP P ++ M G E F+ +H + A Sbjct: 139 VCNYIEDKAVPADHT-TPDPIELNALLSEMVKAGCEYAFMECSSHAIHQKRIGGLKFAGA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL E +AK F+GL K N DD ++ + A T+ Sbjct: 198 LFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDKNGMIMVQNTKA----TV 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ ADF K +C ME+++ GK + V IG N+L G +L Sbjct: 254 KTYSIRTLADFSA-KILEC-HFDGMELEVNGKEVNV--QFIGKFNVSNLLAVYGAAVMLG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + + ALS H GR + + G+ ++D Y P +++ ++ + ++ +G Sbjct: 310 KDPEDVLVALSALHSVNGRLQPFHSP--NGYTAIVD--YAHTPDALENVLNAIHEVL-NG 364 Query: 368 EGRRIAVLG 376 +G I V G Sbjct: 365 KGHVITVCG 373 >gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID332] gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] Length = 492 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ +G++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 483 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 160/385 (41%), Gaps = 36/385 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L+ + G P + G+ DSR + F AIKG DG ++ A++ GA + Sbjct: 5 DILKGVNCEIKG-DPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAI 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 VV+ ++ G ++ V+D A+ K+A +K T+I +TG+ GKT+ ML Sbjct: 64 VVDREIKEYPGVTTVL---VEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYML 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L +G+ N IG + + P +D M + G ++++ V Sbjct: 121 KAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKG-VKYVVMEVSS 179 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H IAV T ++ HL +EE A K+++F+ ++ I N DD + Sbjct: 180 HSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVI--NIDDKY 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ S A + ++G A + + + +VQ++ K E+ G Sbjct: 238 SSMMIESSKA----RVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + + +ALS K G+ + F+ ID Y P Sbjct: 294 SVYNALAAITVADFLGISLRSVREALSQVTVK---GRFEPVETGKDFYVFID--YAHTPD 348 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ + L + + GR+I + G Sbjct: 349 GIQNMMEALKE---YKAGRKILLFG 370 >gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus halodurans C-125] gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus halodurans C-125] Length = 486 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 143/359 (39%), Gaps = 36/359 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I +DSR + FF IKG DGHD+ AV GA VV + LS+PV Sbjct: 24 IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPL-----ELSVPVV 78 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D A+ + VA + + T +I +TG+ GKTT ++ + K IG+ Sbjct: 79 VVRDSRRAMAQ--VATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMTGLIGT 136 Query: 143 YNNHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP---HIAV 188 IG P L L R D+ M + + VR +AV Sbjct: 137 MYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCDFDVAV 196 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT--GTI-FLNYDDSFFELLKAKSHALGIK 245 + + P HL +E AK +F L T G + LN DD A + I Sbjct: 197 FSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDP----ASADFAEMTIA 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + ++G ADFQ + S + E+ + ME+ H IG N+L + Sbjct: 253 QVVTYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLAAAAAAYV 312 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + K+L GR + + +Q F ++D Y P S++ + + +++ Sbjct: 313 SGVPLQEIKKSLEEVKGVAGRFETVKH--DQPFTVIVD--YAHTPDSLENVLKTVGELA 367 >gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] Length = 492 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/362 (23%), Positives = 145/362 (40%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL T+Y +G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGVELAGRLKKDCPDLTVYGYGF 265 Query: 253 SKNADFQLRKWKQCS-------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S++AD ++ + S + SW E + + + + G AQN+ + ++ Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLL-------GRFNAQNLAACIALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + L+ P G R C +N G L+ Y P +++ A+S L +I P Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 171 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++G+ IDS+++ F I DGH+++ A+ GA VAS+ S Sbjct: 33 IHGVRIDSKNMKEGNLFVPII-RMKDGHEYVKEAMDNGA---------VASLWKKSYGTP 82 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ VD+ L AL +LA R +I ITGS GKTT K+++ L S + + Sbjct: 83 PKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKT 142 Query: 140 IGSYNNHIGVPLTLARMPVDVDF 162 G++N+ IG+PLT+ M + +F Sbjct: 143 KGNFNSQIGLPLTILEMKRNTEF 165 >gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] Length = 479 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA L Sbjct: 3 HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V DV AL + + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D E +K H IK I K D ++ + + + + Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQIS 364 P +++ A++ L I Sbjct: 339 AHTPDALEKALTELKNIK 356 >gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Verrucomicrobium spinosum DSM 4136] Length = 507 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 35/371 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P FFA++G DGHDFI A+ +GA +V T A S+ Sbjct: 24 VAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAVAIVAET---APPEDCSVTWL 80 Query: 87 GVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V + AL ++A A + RS A + +TG+ GKTTT +L L+ + +G+ Sbjct: 81 HVKNARVALAEMAAAYKGHPARSMA-VGGVTGTNGKTTTAFLLHHLLNHAHRRCGLLGTV 139 Query: 144 NNHIGVPLTLA--RMPVDV----------DFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 +G L A P + D G + M SH + + TH V AV Sbjct: 140 VYDVGGDLKPATHTTPESLELQGLLSEMRDRGCVAVAMEVSSHAID-QHRTHGVPFAAAV 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245 T ++ HL +EE AK+++F ++G + +N DD + L+ A G+ Sbjct: 199 FTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVDDIWGRRLVDAHKEHPGLV 258 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T +G AD++ + + E++ +G+S+ V IG N L L Sbjct: 259 T---YGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQFNVYNSLAALAAAHG 315 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + ++ +KA+ GR +R N F +D Y P + A+S + P Sbjct: 316 MGCNLRDTVKAMQSSPQIPGRMERV-TPDNHSFHVFVD--YAHTPDGLVNALSTARALRP 372 Query: 366 HGEGRRIAVLG 376 R I V G Sbjct: 373 E---RIITVFG 380 >gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] Length = 484 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 101/390 (25%), Positives = 166/390 (42%), Gaps = 42/390 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + V+ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + G+KT + +F K +DF+ + K S S +V L+G + I Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEG----IEEFSINI 293 Query: 291 HMAQNMLMTLGIVSI---LTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESY 346 N+ +LG + L +D + LS V P GR + N + +ID Y Sbjct: 294 PGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--Y 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 350 AHTPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens FZB42] gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42] Length = 490 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHDF A + GA +V ++ + +PV Sbjct: 24 ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL+ L+ A + + +I ITG+ GKT+T M+ + IG+ Sbjct: 79 IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138 Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG + T +M + VD I E+ SH LG + H Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVS-SHALSLGRV----HGCDYD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236 IAV T + HL +E+ AK+ +F L EK LN DD ++FE + Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFEKVT 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +H I ++G +AD ++ + ++ + E+ + ++ +G N+ Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353 L DT AL +E +G R R L NQ F ++D Y P S+ Sbjct: 307 LAAAATGIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +VL+ EG+ V+G C G+ ++ +AE+ Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395 >gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] Length = 485 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + F A+ G DGH +I AV+KGA ++ ++ A + + Sbjct: 23 ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K A SK ++ +TG+ GKTT +L I + Sbjct: 81 QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ + E+ + + R ++ + Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AK + F+ + K N DD ++ + + +Y Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ +DF+ R E + + L + E+ IG A N+L G +L Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366 + + ALS HP GR R QG+ ++D ++ + A ++VL+ I Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363 Query: 367 GEGRRIAVLG 376 G+G+ I V+G Sbjct: 364 GKGKVITVVG 373 >gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Bacteroides fragilis 638R] Length = 485 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ IDSR + F A+ G DGH +I AV+KGA ++ ++ A + + Sbjct: 23 ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCE-ELPAELAE-GVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ K A SK ++ +TG+ GKTT +L I + Sbjct: 81 QVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTVC 140 Query: 145 NHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I P+TL R+ + E+ + + R ++ + Sbjct: 141 NYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AK + F+ + K N DD ++ + + +Y Sbjct: 199 FTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KVY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ +DF+ R E + + L + E+ IG A N+L G +L Sbjct: 255 TYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLGK 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP--H 366 + + ALS HP GR R QG+ ++D ++ + A ++VL+ I Sbjct: 311 KEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVLE 363 Query: 367 GEGRRIAVLG 376 G+G+ I V+G Sbjct: 364 GKGKVITVVG 373 >gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 487 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 160/377 (42%), Gaps = 53/377 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR ++ + F A++G DGHD+I AV +GA L ++ ++ I + I Sbjct: 24 ITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGA-LAIICEELPEQIVN-GITYV 81 Query: 87 GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEML----------TIAL 130 V D AL +A +A L+ +I ITG+ GKTT +L T L Sbjct: 82 KVADTSSALATIASNFYGNPSANLK----LIGITGTNGKTTIASLLYQLFQKAGYKTGLL 137 Query: 131 SSIK----KT-YACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184 S++K KT Y + + + + LA M V++ E+ + + R T +R Sbjct: 138 STVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVSSHGIHQKR--TEGLRF 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + T ++ HL E K + F+ L KT +N DD K+ A+ + Sbjct: 196 EGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKTAFALVNTDD--------KNGAVMV 247 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299 + K+K + L+ + Q +E QL G + EV IG A N+L Sbjct: 248 QNT----KAKKVTYALKSYADYKAQ-ILENQLSGLLLKIQDQEVWVKLIGSFNAYNLLAI 302 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +L D A+K LS G R++ +++G T I + Y P ++K + Sbjct: 303 FATAELLGLDQIEALKLLSELESVSG---RFQYFISEGNVTAIVD-YAHTPDALKNVLET 358 Query: 360 LSQISPHGEGRRIAVLG 376 ++ I E I V+G Sbjct: 359 INDIRTKNE-ELITVVG 374 >gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia rickettsii] gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] Length = 479 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA L Sbjct: 3 HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V DV AL + + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D E +K H +K I K D ++ + + + + Sbjct: 229 SDIEEIEFVKDYLHNHNVKFITVGTK---GDLEITRLNCSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQIS 364 P +++ A++ L I Sbjct: 339 AHTPDALEKALTELKNIK 356 >gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens TA208] gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens LL3] Length = 490 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHDF A + GA +V ++ + +PV Sbjct: 24 ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL+ L+ A + + +I ITG+ GKT+T M+ + IG+ Sbjct: 79 IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138 Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG + T +M + VD I E+ SH LG + H Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEVS-SHALSLGRV----HGCDYD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236 IAV T + HL +E+ AK+ +F L EK LN DD ++FE + Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +H I ++G +AD ++ + ++ + E+ + ++ +G N+ Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353 L DT AL +E +G R R L NQ F ++D Y P S+ Sbjct: 307 LAAAATAIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +VL+ EG+ V+G C G+ ++ +AE+ Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395 >gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] Length = 502 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 47/381 (12%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G P+ N I DSR + + F A+KG DGH +I AV GA +VV T Sbjct: 18 GNAPESIEN-IHFDSRKVQANDLFVAVKGTQADGHQYIGQAVALGAKVVVCET--FPKNL 74 Query: 80 SLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S S V + AL LA K ++ ITG+ GKTTT +L Sbjct: 75 SDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGKTTTVTLLHQLFRKFGYRV 134 Query: 138 ACIGSYNNHIGVPLTLARM----PVDVDFGIFEL---GMSHLGEIRFLTH-LVRPHI--- 186 + + N+I AR+ P++++ I E+ G +H + +H +V+ I Sbjct: 135 GLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCF-MEVSSHAVVQERIAGL 193 Query: 187 ----AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 A T I+ HL +AK + F+ L T +N DD ++ + A Sbjct: 194 HFTGAAFTNISHDHLDFHETFANYINAKKQFFDQLPPTAFALINADDKRGMVMLQNTVA- 252 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 KT +F + ADF+ R + + +ME+ +EV IGY A N+L I Sbjct: 253 --KTQRTFALKQFADFKARVVESSLQGLFMEID----DVEVWFQMIGYFNAYNLLGIYAI 306 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-------YNANPASMKA 355 +L D + LS GR F +I ES Y+ P +++ Sbjct: 307 AVLLGEDTTETLTLLSGLQSVPGR-----------FEKIIGESGATGVVDYSHTPDALEN 355 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + + ++ G+ + I V+G Sbjct: 356 VLQTIFELRQSGQ-KIITVVG 375 >gi|300023675|ref|YP_003756286.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525496|gb|ADJ23965.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 437 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL---SSIKKTYACIGSYNNHIGVPLTLARMPVD 159 R R+ ATIIA+TGS KTTT +L+ L S + + C G Y + I L L D Sbjct: 32 RERTSATIIAVTGSSAKTTTVALLSHILAGHSKVTSQFLCNG-YGHAIDALLNLRS---D 87 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + + E G G I L++P +A+IT +A H + IE +A K+ + E + Sbjct: 88 TRYSVIEQGTKKPGHIPQAAKLLKPDLAIITLVAIEHYATLKSIEAVAQEKSALVEAVPD 147 Query: 220 TGTIFLNYDDSFFELLKAKSHALGI 244 G + LN+DD + ++ A I Sbjct: 148 DGLVVLNFDDPNVRAMADRTRARSI 172 >gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] Length = 486 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 147/368 (39%), Gaps = 45/368 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 IDSR + + A++G DGH FI A++KGA VV + + + ++ V D Sbjct: 28 IDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAAAVVC--EELPETLAENVTYILVKDS 85 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148 AL LA K +I +TG+ GKT+ +L ++ A + + IG Sbjct: 86 SKALGYLASNYYGNPSQKLKLIGVTGTNGKTSVSTLLFDVFKNLGYPAALLSTVEIRIGE 145 Query: 149 --VP--------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 +P +T+ R+ + +F E+ + + R + IA T + Sbjct: 146 EIIPATHTTPDVITINRILAEAVEKGCEFAFMEVSSHGIAQNRI--EGLHFKIAGFTNLT 203 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYS 249 HL EE K F+ LE T N DD + KAK + +KT+ Sbjct: 204 HDHLDYHKTFEEYLKTKKRFFDELEDTAIAITNVDDKNGNVMLQNTKAKKKSYALKTMAD 263 Query: 250 F-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + GK DF ++ W L GK N+L+ GI + L Sbjct: 264 YHGKLLEVDFNGMLLNFNGKEFW--TTLTGK-----------FNVYNLLLVFGIAAELGF 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + D ++A+S GR + ++ + G F ++D Y P +++ + ++ I E Sbjct: 311 EQDEILQAISKLKRVSGRFETFKS--DGGIFFIVD--YAHTPDALENILDSINDIRTKNE 366 Query: 369 GRRIAVLG 376 R I V G Sbjct: 367 -RLITVFG 373 >gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] Length = 479 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 98/404 (24%), Positives = 163/404 (40%), Gaps = 50/404 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ +S+ + P + FFAIKG DG+DFI AV KGA + VV+T+ +P F Sbjct: 15 VGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGA-VAVVSTEPAKK--KYPVPYF 71 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD+ A+ K AV I ITG+ GKT+ +L + + IG+ N Sbjct: 72 QVDDIDLAMAKAAVKFYKNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIPCSVIGTIN 131 Query: 145 NHIGVPLTLARMPVDVDFGIFELGM-----------------SHLGEIRFLTHLVRPHIA 187 I + A+ P ++ M SH E++ + L +A Sbjct: 132 YRINGEV-FAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVFGL-NFDVA 189 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFELLKAKSHALG 243 + T + H+ E +AK ++F+ L + T +N DD + L K A Sbjct: 190 LFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLRLADKIKAKT 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S +++N L + + +G+S + + +G H N + + Sbjct: 250 TLIPVSLVEAENVKESL---------NGVTFSYKGESASI--NLLGKHNLYNAVFAVKAA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D+ TA+K ++ GR +R Q F+ +D +Y + ++ + + Sbjct: 299 MAYGVDLQTALKGIAKLQGIPGRMQRVNKG--QPFYVFVDFAY-----TTESLMKAYETL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P+ G I V G C G L + + N SHV L+ Sbjct: 352 EPYKNGNIITVFG--C--GGDRDRTKRPLMGLAACQNSSHVLLT 391 >gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2; AltName: Full=Meso-A2pm-adding enzyme 2; AltName: Full=Meso-diaminopimelate-adding enzyme 2; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum ATCC 824] gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum EA 2018] Length = 483 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 151/370 (40%), Gaps = 37/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 + GIS +S+ + F +IKG +DGHDFI A Q GA V+++ D SI + + + V Sbjct: 23 IEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIIDEDFHDSIENTTLVKV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143 L L L R + ++ +TG+ GKTT + L + + IG+ Sbjct: 83 KNSKVALACLCNLFYEEPSR-ELNLVGVTGTNGKTTVIHYIRDMLEAFGNSTGTIGTLGY 141 Query: 144 ---NNHIGV-------PLTLARMPVDVDF-------GIFELGMSHLGEIRFLTHLVRPHI 186 + I V P L + DF + E+ S L ++ + Sbjct: 142 ELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNAVMEVTSSAL--MKHRVDYCSFKV 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T ++ HL IE + K ++F+ + G I N DD+ + K G Sbjct: 200 GVFTNLSQDHLDEHGTIENYKNEKIKLFK-MCPVGVI--NLDDNIAGEIIEK----GTCE 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +++G NAD V +G S +V + G N+L +G + L Sbjct: 253 FFTYGVLTNADLTASDMVYKPNSVSFNVHYKGISSKVKVNVPGEFTVYNVLAAIGSLLCL 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D ++ +K +S P GR + LN+ +ID Y P S++ + + +++ Sbjct: 313 GIDFESILKLVSSIKPVLGRLETINNPLNKNI--IID--YAHTPDSLEKLLIMAREMT-- 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 -NGRIITVFG 375 >gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens str. 13] gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Clostridium perfringens str. 13] Length = 484 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 166/390 (42%), Gaps = 42/390 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + ++ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + G+KT + +F K +DF+ + K S S +V L+G + I Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLEG----IEEFSINI 293 Query: 291 HMAQNMLMTLGIVSI---LTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESY 346 N+ +LG + L +D + LS V P GR + N + +ID Y Sbjct: 294 PGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--Y 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 350 AHTPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius LAA1] gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius LAA1] Length = 463 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 43 FFAIKGPHYDGHDFILH--AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 ++ + H +G D ++H AV++ N ++ A+ +L+IPV ++L Sbjct: 53 YYGHRPEHVEGADIVVHSTAVKQD------NVELQAA-RALNIPVIHRSEML-------- 97 Query: 101 AARLRSKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 ARL IA+TG+ GKTTT M+ T+ + + T+ +G +G + P Sbjct: 98 -ARLMDDRVGIAVTGAHGKTTTTSMIAFTMEQNGLDPTF-IVGGVVADLGDNAKAGKGP- 154 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217 F + + + FL + RP IAV+T + P HL ++ G E + A + Sbjct: 155 ------FVVAEADESDGSFLHY--RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQI 206 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G + ++ DD L++ + + ++G +++AD R + S +V + Sbjct: 207 PSEGLLVMSADDDKLRELRSAARC----RVVTYGFAEDADITARHVELGDRASRSDVLVN 262 Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G+ + + + G H N L + + + + A ALS FH G +R++ Sbjct: 263 GEFVGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFH---GAKRRFQVVAEM 319 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 G ++D+ Y +P ++A I+ GRRI Sbjct: 320 GGVLIVDD-YAHHPTEIRATIAAAKST-----GRRI 349 >gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA6140] Length = 492 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia africae ESF-5] gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia africae ESF-5] Length = 479 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 45/378 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA L Sbjct: 3 HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V DV AL + + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNIVIDK----VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D E +K H IK I K D ++ + + + + Sbjct: 229 SDIEEIEFVKDYLHNHNIKFITVGTK---GDLEIIRLNGSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQIS 364 P +++ A++ L I Sbjct: 339 AHTPDALEKALTELKNIK 356 >gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] Length = 485 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 41/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + F A+KG DGH +I A++KGA V V + + + + Sbjct: 25 ITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEKGA--VAVVCEAWPEVQAEGVTYV 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ +L+ SK ++ +TG+ GKTT +L + Sbjct: 83 QVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVC 142 Query: 145 NHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186 N+I P+TL R+ G + +H V H Sbjct: 143 NYIDDEAVPTEHTTPDPITLNRL-----LGRMADEGCKYAFMEVSSHAVAQHRIAGLKFA 197 Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + T + HL E AK F+GL K N DD ++ + A+ Sbjct: 198 GGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNVDDRNGMIMVQNTKAV--- 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + ++ ADF+ + ++ E ++V GK + V IG N+L Sbjct: 255 -VNTYSLRAVADFKAKVLEESFEGMCLDV--NGKEVSVPF--IGRFNVSNLLAVYAAAVC 309 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + ALS P GR + R +G ++D Y P ++ +S +++I Sbjct: 310 MGRGAEDVLVALSTLRPVNGRFETIRS--REGVTAIVD--YAHTPDALVNVLSTVNEILK 365 Query: 366 HGEGRRIAVLG 376 G I V G Sbjct: 366 R-RGEVITVCG 375 >gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] Length = 483 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 94/375 (25%), Positives = 151/375 (40%), Gaps = 45/375 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR I P F A++G DG +I A+++GA +V + ++V + +LS+P+ Sbjct: 21 ITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVV--LENLSVPLL 78 Query: 87 GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 VL A + LAVAA T++A+TG+ GKT+ L + + A IG+ Sbjct: 79 ---RVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASIGTL 135 Query: 144 ------NNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N G P+ L R+ + V E L + R VR A Sbjct: 136 GVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRL--DGVRLTAA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHA 241 T + H+ + +E+ AK +F+ L + + + DD + + L +A+ H Sbjct: 194 AFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRHV 253 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L I F + Q + KQC +E +L+ G N LM G Sbjct: 254 LTIGRKGQFITINRIEHQ--RSKQC-----VECRLENNIYTFNLPLAGDFQVNNALMAAG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D ++L GR + N + Y P +++ VL Sbjct: 307 LAISTGISPDKVFRSLETLQGAPGRLELVGKTENNASVYI---DYAHKPEALE---QVLL 360 Query: 362 QISPHGEGRRIAVLG 376 + P +GR I V G Sbjct: 361 SVRPFTQGRLILVFG 375 >gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Helicobacter canadensis MIT 98-5491] gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Helicobacter canadensis MIT 98-5491] Length = 478 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 53/302 (17%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167 TIIA+TGS GKT+ K L L K YA S N G+ + + + D I E Sbjct: 156 TIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYIVEA 215 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225 G +G+I+ + L++P IAVI I PAH+ F ++ I AK EI + L+K Sbjct: 216 GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKV----Y 271 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 NY D+ + +F S ++ L G S + + Sbjct: 272 NYKDN----------------------TPPQNFYGNMIWFPQNVSSVDTSLNGTSFSLTY 309 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------ 339 +G +L + A++ AI+ F R + C + +G Sbjct: 310 NGEKMDFETKILGAFNV-----ANISAAIQVAKDFGISSERIIKQVCRM-EGVSHRLSKI 363 Query: 340 -----TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 ++D+SYN N M AI ++S +GR++ V + E S+ +I LAE Sbjct: 364 MVNDKVILDDSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAE 416 Query: 395 VL 396 + Sbjct: 417 AI 418 >gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265] Length = 440 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 64/401 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ S P F A+ G G F A+Q GA ++ + + AS L V Sbjct: 24 VAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQNGASGLLTDVEPEASNYVL------VT 77 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D A+ KL I+ + G+ GKTT KE L +L+ ++ ++ G+ N I + Sbjct: 78 DAFEAVKKLGETLVRSYSGKIVVVLGASGKTTLKE-LARSLAPVR-VWSSYGNRNTIISL 135 Query: 150 PLTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 L ++ + I E G+ + + P+ A+ T++ HL ++ Sbjct: 136 VTDLFNERESALNAPYWILEFGIHDKKDADDFLQVFNPYAALFTSLGAEHLEFLENVD-- 193 Query: 207 ASAKAEIFEGLEKTGTIFLNYDD---------------SFFELLKAKSHALGIKTIYSFG 251 + + + G+ T L D+ ++F++ + + G Sbjct: 194 VAVRTNLKVGMAATKRFALVSDEYSVEDAILFGSPQTSAWFDISSFTCDGCTLGKLMCHG 253 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLMTLGIVSILTADV 310 + K D L W + S QS + G + V G G + L T+ I Sbjct: 254 EEK--DVVLPFWGKRSAQS-----VAGAAAFWVSEGFGLDELPWENLDTINIW------- 299 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 GR + R FF ++YNANP SMK + V+S++ P+G + Sbjct: 300 --------------GRQQLTRWGDLLIFF----DAYNANPESMKEFLEVVSEV-PYG--K 338 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 + V+GDM E+GE S +H LA L I ++ L G V Sbjct: 339 KGLVIGDMLELGEYSHYWHRKLAHWLKKSGIQYLILVGNEV 379 >gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] Length = 492 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 84/363 (23%), Positives = 142/363 (39%), Gaps = 43/363 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188 L PVDV ++ L S + + F + A+ Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL--KAKSHALGI 244 T + HL +E + K+ +F GL+ +N DD + L + K L + Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDGYGAELAGRLKKDCLDL 258 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +YS+G S++AD ++ + S+ Q + +G AQN+ + ++ Sbjct: 259 -AVYSYGFSEHADIRITNFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLC 317 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +D + L+ P G R C +N G L+ Y P +++ A+S L +I Sbjct: 318 ANGYPLDKVLAVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIK 373 Query: 365 PHG 367 P G Sbjct: 374 PQG 376 >gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis YCH46] gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides fragilis YCH46] Length = 485 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 41/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85 + G+ IDSR + F A+ G DGH +I AV+KGA ++ V + G I V Sbjct: 23 ITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILCEELPVELAEGVTYIQV 82 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +D +G K A SK ++ +TG+ GKTT +L I + Sbjct: 83 ADSEDAVG---KAATTFYGNPSSKLELVGVTGTNGKTTIATLLYNTFRYFGYKVGLISTV 139 Query: 144 NNHIG-----------VPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N+I P+TL R+ + E+ + + R ++ Sbjct: 140 CNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG--LKFAGG 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK + F+ + K N DD ++ + + + Sbjct: 198 IFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLDDKNGLVMTQNTKS----KV 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y++ +DF+ R E + + L + E+ IG A N+L G +L Sbjct: 254 YTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELAVQFIGKFNASNLLAVFGAAVLLG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP-- 365 + + ALS HP GR R QG+ ++D ++ + A ++VL+ I Sbjct: 310 KKEEDVLVALSTLHPVAGRFDAIRSP--QGYTAIVDYAHTPD-----ALVNVLNAIHGVL 362 Query: 366 HGEGRRIAVLG 376 G+G+ I V+G Sbjct: 363 EGKGKVITVVG 373 >gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 496 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 147/367 (40%), Gaps = 47/367 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD- 90 DSR I + F A +G + DG +I A+ GA V + D ++P G+ D Sbjct: 29 DSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQWNPEWNVPNQGIKDL 88 Query: 91 -----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +L A V+ L S I +TG+ GKT+ + L A + A IG+ N Sbjct: 89 KHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGTVGN 148 Query: 146 HIGVPL--TLARMPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAVI 189 L T P V+ E+ L + R + V AV Sbjct: 149 GFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQAR--VNGVPFQTAVF 206 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FEL---LKAKSHALG 243 T + HL +E + K+ +F GL+ +N DD + EL LKA L Sbjct: 207 TNLTRDHLDYHGTMEAYGAIKSRLFYWRGLKHA---VINSDDPYGAELIGRLKADRPDL- 262 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTL 300 +YS+G + AD ++ + S+ MEV L GK V +G AQN+ + Sbjct: 263 --AVYSYGFGEQADIRITGFAAASDG--MEVALDTPWGKG-SVKTRLLGRFNAQNLAACV 317 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G++ +D + AL P G R C + G L+ Y P +++ A++ L Sbjct: 318 GVLCADGHPLDKVLAALEKIRPATG---RMDCIIESG-KPLVVVDYAHTPDALEKALATL 373 Query: 361 SQISPHG 367 +I P G Sbjct: 374 QEIKPQG 380 >gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] Length = 484 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 36/367 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I++DSR + F A+KG H DGHDFI A+ KGA + ++ V +PV VD Sbjct: 22 ITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGA-VAILCERRVPIQHDTQVPVCVVD 80 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + L +LA + K +I ITG+ GKT+T + + +L + + IG+ + Sbjct: 81 GLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGTNGQGL 140 Query: 148 GVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 L TL P DV EL F V H AV T + Sbjct: 141 WGQLSDTLNTTP-DVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAVFTNL 199 Query: 193 APAHLSNFSGIEEIASAKAEI--FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E AK + + GL +N DD + + + + A + ++++ Sbjct: 200 SRDHLDYHHSMEAYFEAKWRLMRWPGLRNA---VVNLDDEWVQKNRERIMA---ERVWTY 253 Query: 251 GKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +AD Q + C E +V+ +++ +G N L L ++ Sbjct: 254 ALETDADVQALE-VNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVP 312 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 V+TA + +S +P +GR + R A + + Y P +++ A L H G Sbjct: 313 VNTAARVISNCNPVKGRMETLRSA----YSPTVVVDYAHTPDALEKA---LQSCREHVNG 365 Query: 370 RRIAVLG 376 R + + G Sbjct: 366 RLVVIFG 372 >gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT 98-5491] gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT 98-5491] gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT 98-5491] Length = 485 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 53/302 (17%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167 TIIA+TGS GKT+ K L L K YA S N G+ + + + D I E Sbjct: 163 TIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYIVEA 222 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFL 225 G +G+I+ + L++P IAVI I PAH+ F ++ I AK EI + L+K Sbjct: 223 GARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKV----Y 278 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 NY D+ + +F S ++ L G S + + Sbjct: 279 NYKDN----------------------TPPQNFYGNMIWFPQNVSSVDTSLNGTSFSLTY 316 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF------ 339 +G +L + A++ AI+ F R + C + +G Sbjct: 317 NGEKMDFETKILGAFNV-----ANISAAIQVAKDFGISSERIIKQVCRM-EGVSHRLSKI 370 Query: 340 -----TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 ++D+SYN N M AI ++S +GR++ V + E S+ +I LAE Sbjct: 371 MVNDKVILDDSYNGNLDGMLEAI----RLSSLYDGRKVIVTPGLVES---SKEANIALAE 423 Query: 395 VL 396 + Sbjct: 424 AI 425 >gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] Length = 480 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 158/386 (40%), Gaps = 56/386 (14%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + Q V G+SI+S+++ + FF +KG + D +DFI A+ + LV+ + A+I Sbjct: 8 LFKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSATID- 66 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V+DV AL + + +IA+TG+ GK++ + S + K A I Sbjct: 67 ---KIIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASI 123 Query: 141 GSYNNHIGVPL--------------TLARMPV----------DVDFGIFE-----LGMSH 171 G+ IGV + TL + ++++ FE L + Sbjct: 124 GT----IGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 179 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230 LGEI+ +IA T+ + HL E AK ++F E L + G LN D Sbjct: 180 LGEIKV-------NIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIE 232 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 E +K IK I + GK D Q+ K + + + IG Sbjct: 233 EIEFIKDYLLNHNIKFI-TVGKK--GDVQITKINGSLKGQNISFAFNNRECSFNTSIIGS 289 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L+ + + D + ++ L+ P +GR +R N F Y+ P Sbjct: 290 FQASNLLIAALSIHYIGCDFNKIVEILTQVKPVKGRMERID---NTNIFV----DYSHTP 342 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ A++ L I + + I V G Sbjct: 343 DALEKALTELKNIKLR-DSKLIVVFG 367 >gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] Length = 490 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 40/303 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84 + GI DSR I F A+KG DGH+FI A+ GA +++V ++ S I Sbjct: 21 IEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEENIEVSKYDKYEDIS 80 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V+DV L +A + K II ITG+ GKTT+ + L +I + A IG+ Sbjct: 81 FVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTS----SYILENILEKTARIGT 136 Query: 143 YNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186 N I P +L + + V++ I E+ SH EI + ++++ Sbjct: 137 TGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVS-SHALEIGRV-NMLKFDS 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGI- 244 A+ T + HL +E +AK +IF L +GT +N DD + + +++ K A + Sbjct: 195 AIFTNLTQDHLDFHKTMENYFNAKRKIFSMLRNSGTGTVNIDDGYGKRIIEEKKDAENVC 254 Query: 245 -KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KT+ K KNAD + + +E + G +++VH+ Y N++ + Sbjct: 255 YKTVSI--KDKNADL----YGEIAEYTN-----DGMKIKIVHNDKEYFANINLVGEYNLY 303 Query: 304 SIL 306 ++L Sbjct: 304 NVL 306 >gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] Length = 487 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 149/373 (39%), Gaps = 44/373 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V G++IDSR I F A+KG DGH FI A++ GA V+ DM G I Sbjct: 23 VTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALELGAKSVLCE-DMPEEKVEGVTYIQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L R K ++ +TG+ GKTT +L + + Sbjct: 82 VASTEDAVGKVATLFYGDPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVC 140 Query: 145 NHI---GVP------------LTLARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I +P + L +M ++ E + +G ++F L Sbjct: 141 NYIEDEAIPADHTTPDPIELNMLLGKMVEAGCEYAFMECSSHAIAQKRIGGLQFAGGL-- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL E +AK F+GL KT N DD ++ + A Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLSKTAFAITNADDKNGMIMVQNTKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ ++ ADF+ R +C M +++ G+ EV IG N+L G Sbjct: 252 --TVKTYSTRSMADFRARIL-EC-HFGGMYLEIDGR--EVGVQFIGKFNVSNLLAVYGAA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + +S H GR + + +G+ ++D Y P +++ ++ + ++ Sbjct: 306 IMLGKKPEDVLVVMSTLHSVSGRLEPIQSP--EGYTAIVD--YAHTPDALENVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 G I V G Sbjct: 362 LEGKGGEVITVCG 374 >gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein [Bacillus selenitireducens MLS10] gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus selenitireducens MLS10] Length = 451 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 16/223 (7%) Query: 10 LLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 L+Q++ G +P FV +G+ + +I + F +KG +DGH I AV+ GA Sbjct: 9 LIQSVSKEMSGDIPLTFVAHGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAAS 68 Query: 69 VVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + ++ V + P+F V+D A+ ++A T +A+TG + T+ T Sbjct: 69 LWRISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTR---T 125 Query: 128 IALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + +KK Y +G PL ++ MP D D +F++ +R + L+ Sbjct: 126 VLAGMLKKNYRVYLPEET-LGEPLPFFSSVLSMPDDTDVILFDVPSRTDDIVRSASELII 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 P +AV+ H ++ IA I G++KTGT+F++ Sbjct: 185 PQLAVLCCHRDQHEAD------IAGHAVHIEAGMKKTGTVFVD 221 >gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] Length = 517 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 97/366 (26%), Positives = 151/366 (41%), Gaps = 35/366 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V+G+S DSR I P F A++G DGH I A++ GA + +V A + G + Sbjct: 36 VSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEAGA-VAIVCEAYPAELRDGVCYLR 94 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V L L+K + +I +TG+ GKTTT +++ L++ IG+ Sbjct: 95 VTESRKALAELSK-NCYGNASDQLMLIGVTGTNGKTTTARLISSMLNAAGIPAGYIGTGL 153 Query: 143 ---YNNHIGVPLT---------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N I + T L R VD + +S + H +R AV T Sbjct: 154 CRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVMEVSSHALVLDRVHGLRFRSAVFT 213 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + P HL +EE A+AK +F L G LN DD +A A G+ Y + Sbjct: 214 NLTPEHLDFHETMEEYAAAKRLLFSRLTDDGFAVLNADDP-----QAGFMAAGLPNDYLY 268 Query: 251 -----GKSK--NADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G S ++D + R + S E S EV +S + G + NML Sbjct: 269 CCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSATMQVPLPGEYNVMNMLEAFA 328 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L D A+ L+ GR +R A ++ ++D Y P +++ A+ L Sbjct: 329 VGISLGLDPAKALAGLAESEAVPGRMERIWSA-DRSRCGVVD--YAHTPDALQKALETLR 385 Query: 362 QISPHG 367 ++P G Sbjct: 386 AVTPSG 391 >gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID18] gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] Length = 492 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] Length = 492 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] Length = 485 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 37/389 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+A+ I VNGI +DSR + F A+KG DGH++I A++ GA Sbjct: 3 LENMLKAVNAQQIIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 V+V + I S ++ + D A+ KLA SK ++ +TG+ GKTT Sbjct: 62 TVIVCEQLPVQIES-NVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGIFELGM 169 +L I + N+I P+T L RM + +F Sbjct: 121 LLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFMEVS 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 SH + ++ L + T I HL E AK F+ L K N DD Sbjct: 181 SHSVVQKRISGLTFAG-GIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKQAFALTNLDD 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + A + ++ DF+ + E S+ + L + EV IG Sbjct: 240 KNGTVMTQNTQA----KVAAYSLHSLCDFK----GKVLEDSFDGMLLDINNREVNVQFIG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N+L G +L + + LS+ P GR R +G+ ++D ++ + Sbjct: 292 RFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSP--KGYTAIVDYAHTPD 349 Query: 350 PASMKAAISVLSQISP--HGEGRRIAVLG 376 A ++VL I G G+ I V+G Sbjct: 350 -----ALVNVLEAIHEVLRGRGQVITVVG 373 >gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 488 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 25/251 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ +S+++ P + F AI G DGH FI A+ GA V+ + IG S+P Sbjct: 23 ITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAKAVIGEKE----IGKQSVPYI 78 Query: 87 GVDDVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D A LA+AA+ ++KA +I ITG+ GKTTT ML L + T + G Sbjct: 79 KVTDSRKA---LALAAKRFYKNEQNKAIMIGITGTNGKTTTSYMLKHILETCGHTCSLFG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE----IRFLTHLVRPH--------IAVI 189 S N + + A +D + ++ + + +H + H + Sbjct: 136 SVQNIVNGQVLPATTNTTMDALELQKQLAASNDQVVIMEVTSHALMQHRVYGIEFDYGLF 195 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL +E AK +FE L G + + E A + IY+ Sbjct: 196 TNLSQDHLDYHGSMEAYFGAKLRLFEQLAPAGKAVIQAQGEWGEAFLASLKQRDVPYIYT 255 Query: 250 FGKSKNADFQL 260 G ++ A QL Sbjct: 256 LGGAE-ATLQL 265 >gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] Length = 494 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 154/373 (41%), Gaps = 35/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLS- 82 V G+++DSR + F A+ G + G FI A+++GA ++ + + A + S S Sbjct: 23 VTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGATAILTDPAGARLAADVPSASD 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTK--------EMLTIA-- 129 + V DD LA AA L S T+IA+TG+ GKT+ EM A Sbjct: 83 VAVVLADD---PRQTLAFAAALWSGGQPNTMIAVTGTNGKTSVSTFCRQIWVEMGYAAAN 139 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPH 185 L + A N+ P+TL R + G+ M SH + R L VR Sbjct: 140 LGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAMEASSHGLDQRRLDG-VRIM 198 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T HL E AK +F L T +N DD + ++ LGI Sbjct: 199 AAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNLDDPKGPEVAEIAYDLGI 258 Query: 245 KTIYSFGKSKNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G+S++AD Q L +W + Q + +GK+ + IG A N+L+ +V Sbjct: 259 DVI-GVGRSEHADLQLLAQWFDATGQD-LRFDFEGKTYVKRLNLIGGFQADNVLLAAALV 316 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 AD D L GR + G +D ++ + A + LS + Sbjct: 317 IACGADADEVFDTLPHLTTVRGR-MELAATRDNGAAVFVDYAHTPD-----AVATALSAM 370 Query: 364 SPHGEGRRIAVLG 376 PH GR IA++G Sbjct: 371 RPHVMGRLIAIIG 383 >gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA 1090] gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] Length = 492 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] Length = 492 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] Length = 485 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 32/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 + G++IDSR I F A+KG DGH FI A++ GA + ++ DM + I Sbjct: 23 IKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELGA-VAILLEDMPEELNEKVTYIQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V ++ G + + R K ++ +TG+ GKTT +L + + Sbjct: 82 VASTEEEAGKVATMFYGEPSR-KLKLVGVTGTNGKTTIATLLYRMFREFGHKVGLLSTVC 140 Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189 N+I VP + P ++ M G E F+ +H + H + Sbjct: 141 NYINDEEVPASHT-TPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL E +AK F+GL KT N DD ++ + A T+ + Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNADDKNGMIMVQNTKA----TVKT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + ADF+ + + E ++EV GK + V IG N+L G +L Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEV--DGKEVGV--QFIGKFNVSNLLAVYGAAIMLGKK 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A+S GR + + +G+ ++D Y P +++ +S + + G Sbjct: 312 PEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--YAHTPDALENVLSAIHDVLDGKGG 367 Query: 370 RRIAVLG 376 I V G Sbjct: 368 HVITVCG 374 >gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 492 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] Length = 492 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA + + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F +GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWQGLQHA---VINIDDGYGAELVCRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q +G AQN+ + ++ +D Sbjct: 266 SEHADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLGKICPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 486 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 25/251 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I+ DSR + + F +KG DGH + AV GA ++V+ D+ +I I + Sbjct: 23 INKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNGAKVIVIQDDV--NIDDKEITIV 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D AL + K II ITG+ GKTTT M+ L K IG+ Sbjct: 81 KCSDTRKALALMGANYYGNPSEKMKIIGITGTNGKTTTAFMIKDILECAGKKVGLIGTIA 140 Query: 145 NHI-GVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I G + R + V++ + E+ L R + V+ + Sbjct: 141 NYICGEKIHTERTTPESLELQELFGEMVEKGVEYCVMEVSSHSLALDR--VYGVKFECGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK ++F E++ +N DD++ + L + IY Sbjct: 199 FTNLTRDHLDFHKTFENYYDAKFKLF---ERSCIKVINVDDNYGIQVLKDCQKLNAENIY 255 Query: 249 SFGKSKNADFQ 259 SF ++D++ Sbjct: 256 SFSVKSDSDYK 266 >gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia montanensis] Length = 479 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 45/380 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H V G+SI+S+++ ++ FFAIKG + DG+ FI A+ KGA L Sbjct: 3 HNLKQLFQQHK--------VKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V DV AL++ + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNIVIDK----VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTHSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D E +K H IK I + GK D ++ + + + + Sbjct: 229 SDIEEIEFVKDYLHNHNIKFI-TVGKK--GDLEITRINCSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQISPH 366 P +++ A++ L I H Sbjct: 339 AHTPDALEKALTELKNIKLH 358 >gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 519 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 152/371 (40%), Gaps = 35/371 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPV 85 + ++ DSR + P F AI G DGH F+ A+++GA ++V D+ + + V Sbjct: 49 ITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQGAAVIVHQADLARYHDDVVYLKV 108 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +LG +A+R K T+ ITG+ GKT++ LT L + K A +G Sbjct: 109 TDCRRLLG-----HIASRFFGHPSEKITVTGITGTNGKTSSTYFLTGILRAAGKKCARMG 163 Query: 142 SYNNHIGVPL-------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-- 186 + +N IG + T A + V G +L M + L L H Sbjct: 164 TIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGCSDLVMEASSQALDLDRLTDVHFDY 223 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK- 245 A+ T + HL E AKA +F+ EK I N DD + L + K Sbjct: 224 ALFTNLTQDHLDYHKTFEAYFEAKARLFDQTEKAAII--NRDDPWGRKLINRIRERHPKL 281 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I ++G+ AD++L + S +Q + + +G M N + T I++ Sbjct: 282 KIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEKETIFLDVLGRFMVYNAVGT--IIAA 339 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D A ++ G+ R N F ++D Y P +++ ++L + Sbjct: 340 REQGIDWAAIKAALADAPVVEGRMERIKTNLDFDIVVD--YAHTPDALE---NLLKTVKE 394 Query: 366 HGEGRRIAVLG 376 GR IAV G Sbjct: 395 LARGRVIAVFG 405 >gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] Length = 506 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 102/399 (25%), Positives = 162/399 (40%), Gaps = 51/399 (12%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +LL I+ I G + + + IS DSR+I AF I+G DGH F+ A + GAGL Sbjct: 19 ELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGAGL 78 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125 + + D+ G IPV V D L + L+ + + K ++ ITG+ GKTTT + Sbjct: 79 FIASKDIADKAG--DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTSYL 136 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPL--TLARMPV--------------DVDFGIFELGM 169 + ++ IG+ ++ IG + T PV D + E+ Sbjct: 137 INHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEVSS 196 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTI 223 L R + AV T ++ HL + A K +F L K T Sbjct: 197 HALALDRVIG--CDFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLKTA 254 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRK-----WKQCSEQSWMEVQLQ 277 LN DD + E KA + A + ++G K ADF K WK ++ Sbjct: 255 VLNIDDKYSEEYKAHTPA----EVITYGIDDKTADFYADKIFFDDWKM-----RFDLHFL 305 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G +V + +G N+L + V AI+AL F GR + ++ Sbjct: 306 GDVYKVETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHT--DKN 363 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + +ID + P + + L+++ PH R I ++G Sbjct: 364 YKIIID--FAHTPDGLMKVLETLNKV-PH--NRIITLIG 397 >gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] Length = 498 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 36/346 (10%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 D++ I+ +I G +P VN IS DSR I + F AIKG DGH+FI +++GA L Sbjct: 5 DIIDNIKIKTIYGKLPDS-VNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQGAAL 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATI--IAITGSVGKTTTK 123 V+ + ++ + ++ V ++ K+A +A ++ A I +A+TG+ GKT+ Sbjct: 64 VIASRYENYNVENCAVLVVREHEI----EKIASMIAKKINEGADIHTVAVTGTNGKTSIS 119 Query: 124 EMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 ++ L ++ ++ A IG+ + + P+ DV ++G I+ L Sbjct: 120 TLVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFE 179 Query: 182 VRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIF 224 H +A+ T + HL ++ A K+ +F L + Sbjct: 180 ASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGV 239 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---- 280 LN DDS+++++ S L + I K + ADF KQ E + KS Sbjct: 240 LNKDDSYYKII---SKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGT 296 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + IG M N+L L V + V+ + L GR Sbjct: 297 FECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGR 342 >gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] Length = 485 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 146/378 (38%), Gaps = 45/378 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G++ DSR +AP F A+ G DG FI A+ +GA V+ TD S + + Sbjct: 19 IITGVTSDSRKVAPGALFVALPGTAADGRAFIPQALAQGAAAVLAPTDTPDSAAPVLVTS 78 Query: 86 FGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTT---------------TKEMLT 127 V A+AAR T +A+TG+ GKT+ + M T Sbjct: 79 GDV------RRAYAIAARGFYGAQPRTCVAVTGTNGKTSVAAFCRQIWAGLGHKSASMGT 132 Query: 128 IALSSIK--KTYACIG----SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + + K +TYA G S + L DV E SH + R L Sbjct: 133 LGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAKDVTHVAVE-ASSHGIDQRRLDG- 190 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS- 239 V A T + HL +++ +AK +FE L G T LN D + A S Sbjct: 191 VALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPRGRTAVLNADSDAYSAFAAASI 250 Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 LG+ + G+ D L + E + + ++G +++ G A N L+ Sbjct: 251 MAGLGVMGVGERGR----DLALIGRQATPEGQRLTLDVRGDVRDILLPLAGAFQASNALV 306 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+ D I AL +GR +R +G + Y P ++ + Sbjct: 307 AAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRGEVYV---DYAHTPDGLE---T 360 Query: 359 VLSQISPHGEGRRIAVLG 376 VL+ + PH GR I V G Sbjct: 361 VLTALRPHATGRLIVVFG 378 >gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] Length = 479 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 45/378 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA L Sbjct: 3 HNLKQLFQQHN--------VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ TD SI + V V DV AL + + +IA+TG+ GK++ + Sbjct: 55 VI--TDNKKSI--VIDKVIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIA 110 Query: 128 IALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFEL 167 S + K A IG+ I VP L+ ++ + +++ +FE Sbjct: 111 QTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEA 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 L + R ++ +IA T+ + HL E AK ++F L G LN Sbjct: 171 SSHGLDQARLRE--IKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 228 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + +K H IK I K D ++ + + + + Sbjct: 229 SDIEEIDFVKDYLHNHNIKFITVGTK---GDLEITRLNGSLKGQNINFTFNNREYNFNTP 285 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L+ + + + D I +L +GR +R N F Y Sbjct: 286 IIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERID---NTNIFV----DY 338 Query: 347 NANPASMKAAISVLSQIS 364 P +++ ++ L I Sbjct: 339 AHTPDALEKVLTELKNIK 356 >gi|255975546|ref|ZP_05426132.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2] gi|256619390|ref|ZP_05476236.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256762846|ref|ZP_05503426.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3] gi|256853430|ref|ZP_05558800.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8] gi|257079296|ref|ZP_05573657.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1] gi|257087121|ref|ZP_05581482.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6] gi|294779802|ref|ZP_06745189.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis PC1.1] gi|255968418|gb|EET99040.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2] gi|256598917|gb|EEU18093.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256684097|gb|EEU23792.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3] gi|256711889|gb|EEU26927.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8] gi|256987326|gb|EEU74628.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1] gi|256995151|gb|EEU82453.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6] gi|294453176|gb|EFG21591.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis PC1.1] gi|295113194|emb|CBL31831.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus sp. 7L76] gi|323481052|gb|ADX80491.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis 62] Length = 445 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 255 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 364 -LDLADEVFLCNI 375 >gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI18] gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID1] gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID24-1] gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] Length = 492 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 492 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 86/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S++AD ++ + S+ W E + + + + G AQN+ + ++ Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + L+ P G R C +N G L+ Y P +++ A+S L +I P Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halanaerobium praevalens DSM 2228] Length = 486 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 28/319 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++ I DSR+I F AI G DGH +I A++ GA +++ ++ ++ + V Sbjct: 23 ISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGATAIIIEKELEVYEKDITYLKV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+ L K L+ + +I ITG+ GKTTT +L L A G+ +N Sbjct: 83 ENSRQVMSILAKNFFDNPLK-EIKLIGITGTNGKTTTAYLLYKILQKYAGQAALFGTISN 141 Query: 146 HIG---------VPLTL------ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 IG P +L A+M + +G+ E+ SH ++ + + A+ Sbjct: 142 IIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVMEVS-SHALDL-YRVESIDFEAAIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++P HL ++ K+ +F L+ +N DD E +K KS A + YS Sbjct: 200 TNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKYAIINADDPNSEYIKKKSEAQNLS--YS 257 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG--YHMAQNMLMTLGIVSILT 307 +K+AD ++K +Q+ +E + GK + +G +++ ++ + L + +L Sbjct: 258 LD-TKSADLYTTEFKL--KQTGLEYKTGGKLVANFKLNLGGLFNIYNSLAVVLTAL-VLG 313 Query: 308 ADVDTAIKALSVFHPKEGR 326 + + KAL+ F GR Sbjct: 314 IEKNIIKKALADFDSVPGR 332 >gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] Length = 485 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 32/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 + G++IDSR I F A+KG DGH FI A++ GA + ++ DM + + Sbjct: 23 IKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELGA-VAILLEDMPEELNEKVTYVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V ++ G + + R K ++ +TG+ GKTT +L + + Sbjct: 82 VASTEEEAGKVATMFYGEPSR-KLKLVGVTGTNGKTTIATLLYRMFREFGHKVGLLSTVC 140 Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189 N+I VP + P ++ M G E F+ +H + H + Sbjct: 141 NYINDEEVPASHT-TPDPIELNCLLAKMVEAGCEYAFMECSSHAIHQHRIGGLEFVGGIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL E +AK F+GL KT N DD ++ + A T+ + Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNADDKNGMIMVQNTKA----TVKT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + ADF+ + + E ++EV GK EV IG N+L G +L Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEV--DGK--EVGVQFIGKFNVSNLLAVYGAAIMLGKK 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A+S GR + + +G+ ++D Y P +++ +S + + G Sbjct: 312 PEDVLIAMSTLKSVNGRLEPIQSP--EGYTAVVD--YAHTPDALENVLSAIHDVLDGKGG 367 Query: 370 RRIAVLG 376 I V G Sbjct: 368 HVITVCG 374 >gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 165/403 (40%), Gaps = 49/403 (12%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 S + + F A+ GP DG FI A+ +GA +V + G+ + V DD Sbjct: 25 SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGATARLVTH-DDPRQ 83 Query: 94 ALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH----- 146 AL LA AA ++ +TG+ GKTT +L + +G+ + Sbjct: 84 ALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRWPGFS 143 Query: 147 IGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PLT LARM VD + E+ L + R + AV+T + Sbjct: 144 MDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAG--LAYDAAVLTNLTQD 201 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-----FELLKAKSHALGIKTIYS 249 HL +E AKA +F L K G + +NY+D + E L A LG Y Sbjct: 202 HLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLG----YG 257 Query: 250 FGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +R + + +E V+ +G+ E+V +G H A N+L +G+ L Sbjct: 258 LETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLG 317 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ ++AL+ F GR + R G +D ++ + A ++VLS + G Sbjct: 318 LR-ESDMQALAGFTGVSGRLE--RVTNPHGLNVFVDYAHTPD-----ALVNVLSAVKALG 369 Query: 368 EGRRIAVLG-----DMCEMGELSQSF--HIDLAEVLSLYNISH 403 R + V G D + + Q+ H D+A VL+ N H Sbjct: 370 VRRLVCVFGCGGNRDRAKRPLMGQAVCRHADVA-VLTSDNPRH 411 >gi|229545504|ref|ZP_04434229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TX1322] gi|307268256|ref|ZP_07549640.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248] gi|307275646|ref|ZP_07556787.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134] gi|307280524|ref|ZP_07561573.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860] gi|307295969|ref|ZP_07575801.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411] gi|229309420|gb|EEN75407.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TX1322] gi|306496300|gb|EFM65879.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411] gi|306504072|gb|EFM73288.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860] gi|306507751|gb|EFM76880.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134] gi|306515416|gb|EFM83947.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248] gi|315025920|gb|EFT37852.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2137] gi|315028958|gb|EFT40890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4000] gi|315033232|gb|EFT45164.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0017] gi|315143492|gb|EFT87508.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2141] gi|315147575|gb|EFT91591.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4244] Length = 456 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 266 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 375 -LDLADEVFLCNI 386 >gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D/UW-3/CX] gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276] gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276s] gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia trachomatis D/UW-3/CX] gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9768] gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11222] gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11074] gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9301] gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-EC] gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-LC] Length = 483 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LLQ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 6 LLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121 +A + SL P V ++ A + +A+ A L ++ +I ITG+ GKTT Sbjct: 62 -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165 ++ + + IG+ + +G + A M ++ + Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVM 175 Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E +GM+ LG +R L V+T I HL +EE +AK + F L + G Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N D + S A + S+ + AD++ + K S S ++ QG+ Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFP 286 Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 IG H N+L +L +V L D ++ + +G R L F Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ID Y P ++ +L Q+ P +GR I V G Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375 >gi|329572871|gb|EGG54496.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TX1467] Length = 379 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 34 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 84 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 85 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 137 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 138 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 189 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 190 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 244 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 245 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 297 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 298 -LDLADEVFLCNI 309 >gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] Length = 490 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 102/402 (25%), Positives = 166/402 (41%), Gaps = 63/402 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHDF A + GA +V ++ + +PV Sbjct: 24 ITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL-----DVDVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL+ L+ A + + +I ITG+ GKT+T M+ + IG+ Sbjct: 79 IVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMY 138 Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG + T +M + V+ I E+ SH LG + H Sbjct: 139 IKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEVS-SHALSLGRV----HGCDYD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLK 236 IAV T + HL +E+ AK+ +F L EK LN DD ++FE + Sbjct: 194 IAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYFERVT 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +H I ++G +AD ++ + ++ + E+ + ++ +G N+ Sbjct: 254 A-AH------ILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNV 306 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353 L DT AL +E +G R R L NQ F ++D Y P S+ Sbjct: 307 LAAAATAIAAGLPFDTITSAL-----EELQGVRGRFELVNHNQPFPVVVD--YAHTPDSL 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +VL+ EG+ V+G C G+ ++ +AE+ Sbjct: 360 E---NVLNTCKDMTEGKLFVVVG--C-GGDRDKTKRPKMAEI 395 >gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] Length = 524 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 97/413 (23%), Positives = 160/413 (38%), Gaps = 63/413 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +++DSR++ P + F A +G DG FI HA+++GA VV D A P V Sbjct: 35 LAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKTPNLPVP 94 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ +A + K +I +TG+ GKT+ + A++++ + A IG+ Sbjct: 95 DLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGTLG--- 151 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------------- 184 A P +++F S L + + L R Sbjct: 152 ------AGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATF 205 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +A++T ++ HL +E A+AKA +F GL+ LN DD F L Sbjct: 206 AVAMLTNLSRDHLDYHGTMEVYAAAKARLFHWRGLKYA---VLNLDDVFGMQLLHDLEGT 262 Query: 243 GIKTI-YSFGKS----KNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMA 293 G I Y F N R W + S +++ +G+ ++ +G A Sbjct: 263 GTGMIGYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNA 322 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L L + A++AL P GR ++ +G LI Y P ++ Sbjct: 323 SNLLGVLATLLASGIAFPEAVRALQKVQPVAGRMQQIG---GEGDEPLIVVDYAHTPDAL 379 Query: 354 KAAISVLSQI--------SPH-GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + ++ L + P G GR + V G C GE Q + EV + Sbjct: 380 EKVLTTLREAVDAGFPGGKPETGSGRLVCVFG--C-GGERDQGKRPLMGEVAT 429 >gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] Length = 483 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 153/370 (41%), Gaps = 40/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 ++G++IDSR I P F AIKG DGH++I A+ GA V+ + ++ I V Sbjct: 23 ISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVAVLCEKAPKEPLSDITYIVV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +D +G VA R + +I +TG+ GKTT +L + + Sbjct: 83 TSTEDAVG-----KVATRFYGDPSKHLKLIGVTGTNGKTTIATLLYNMFRKLGHRCGLLS 137 Query: 142 SYNNHI---GVPLT-LARMPVDVDFGIFELGMSHLGEIRFL---TH-LVRPHI------- 186 + N+I +P P++++ + ++ H E F+ +H + + I Sbjct: 138 TVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHC-EYVFMECSSHAIAQKRIGGLNFTG 196 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + T + HL E +AK F+ L K+ N DD ++ + A T Sbjct: 197 GIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDKNGMVMVQNTKA----T 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ ADF+ R + + ++E+ Q EV IG N+L +L Sbjct: 253 VKTYSVRTAADFKARIIECHFQGMYLEIDGQ----EVGVQFIGKFNVSNLLAVYATARML 308 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + A+S H GR QGF ++D Y P ++K + + ++ Sbjct: 309 GKQREEILIAMSTLHSVNGRMDTLHSP--QGFTAVVD--YAHTPDALKNVLLAIHEVD-- 362 Query: 367 GEGRRIAVLG 376 G+G I V G Sbjct: 363 GKGHVITVCG 372 >gi|256964811|ref|ZP_05568982.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis HIP11704] gi|256955307|gb|EEU71939.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis HIP11704] Length = 445 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 255 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 364 -LDLADEVFLCNI 375 >gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 484 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 144/368 (39%), Gaps = 39/368 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++IDSR I F A+KG DGH +I A++KGA V V + + + + + V Sbjct: 25 GVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGA--VAVLCEDLPEVKAPHVTYIQV 82 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A +A K ++ +TG+ GKTT +L + + + N+ Sbjct: 83 QDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIATLLYNLFRKLGYKCGLLSTVCNY 142 Query: 147 I---GVPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA--V 188 I VP L+RM D+ E + + R + H A + Sbjct: 143 IEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECSSHAIAQKR----IAGLHFAGGI 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK F+ L KT N DD + + A T+ Sbjct: 199 FTNLTRDHLDYHKTFENYRDAKKAFFDSLPKTSFAITNADDKNGMYMVQNTKA----TVK 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ ADF+ R + E ++E+ EV IG N+L G +L Sbjct: 255 TYSARSLADFKARIIECHFEGMYLEID----GREVGVRFIGKFNVSNLLAVYGASVMLQQ 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + ALS GR + +GF ++D Y P +++ + + + +G+ Sbjct: 311 QPENILLALSTLQSVSGRLEPIYSP--EGFTCIVD--YAHTPDALENVLLAIHDVL-NGK 365 Query: 369 GRRIAVLG 376 G+ I V G Sbjct: 366 GKVITVCG 373 >gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] Length = 493 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 33/372 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GIS+DSR++ P F A+ G G F+ A+ +GA V+ + + A I + ++ Sbjct: 22 ISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAAVLTDAEG-AQIAAETLAGS 80 Query: 87 GVDDVLGA--LNKLAVAARL---RSKATIIAITGSVGKTTT--------KEM----LTIA 129 V V+ A LA A L AT+IA+TG+ GKT+ +EM + + Sbjct: 81 EVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATFVRRLWQEMGFRAVNLG 140 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEIRFLTHLVRPH 185 + I+ + + P+TL + + G+ M SH + R L V+ Sbjct: 141 TTGIEGDWQA--PLRHTTPDPITLHKALAEAALAGVEHAAMEASSHGLDQRRLDG-VQLR 197 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + HL + EE +AKA +F L + GT +N DD+ + A + A G Sbjct: 198 AAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGIDMLAIAKARGQ 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ + G S+ AD +L + + + + G ++ + IG QN L+ G+V Sbjct: 258 ETL-TVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQNALLAAGLVI 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A+ + +AL GR + + G +D + P ++ AI L Sbjct: 317 ACGAEAEDVFRALPKLDTVRGR-MQLAATRDSGAAVYVD--FAHTPDAVSTAIKAL---R 370 Query: 365 PHGEGRRIAVLG 376 PH GR +A++G Sbjct: 371 PHVMGRLVAIIG 382 >gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] Length = 484 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 166/394 (42%), Gaps = 50/394 (12%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + ++ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + G+KT + +F K +DF+ + K S S +V L+ EV I Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE----EVEDFSINI 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCAL-----NQGFFTLI 342 N+ +LG + I +++ + + KEG RC L N + +I Sbjct: 294 PGEYNVYNSLGCI-ICAYNLNIPMNKI-----KEGLSDVVIPGRCELVAKEKNLPYSIII 347 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P ++ ++LS + R I+V G Sbjct: 348 D--YAHTPDGLE---NILSTVKAFTRNRMISVFG 376 >gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 481 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 147/373 (39%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V + IDSR + P F AIKG DGH FI AV +GA V+ T M A + G + Sbjct: 23 VTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQGAVAVLCET-MPAELPQGVTFVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L K ++ +TG+ GKTT +L + + Sbjct: 82 VESTEDAVGPVATL-FYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVC 140 Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I +P L RM ++ E + +G + F Sbjct: 141 NYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIGGLTFAG---- 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V + + HL E +AK F+ L K N DD ++ + A Sbjct: 197 ---GVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNADDKNGMVMVQNTRA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ ++ ADF+ + + E ++E+ EV IG N+L G Sbjct: 252 --TVKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFIGKFNVSNLLAVYGTA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + +S H GR + R +G+ ++D Y P +++ ++ + ++ Sbjct: 306 VMLGKRPEDILLVMSTLHSVNGRLEPLRSP--EGYTVIVD--YAHTPDALENVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 +G+G+ I V G Sbjct: 362 L-NGKGKVITVCG 373 >gi|257082265|ref|ZP_05576626.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol] gi|256990295|gb|EEU77597.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol] Length = 445 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 255 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 364 -LDLADEVFLCNI 375 >gi|29376436|ref|NP_815590.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis V583] gi|255972446|ref|ZP_05423032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1] gi|256959228|ref|ZP_05563399.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5] gi|256961595|ref|ZP_05565766.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96] gi|257084882|ref|ZP_05579243.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1] gi|257090198|ref|ZP_05584559.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188] gi|257416351|ref|ZP_05593345.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis AR01/DG] gi|257419600|ref|ZP_05596594.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11] gi|257422294|ref|ZP_05599284.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98] gi|300860238|ref|ZP_07106325.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD Ef11] gi|44888194|sp|Q833N6|MURC_ENTFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|29343900|gb|AAO81660.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis V583] gi|255963464|gb|EET95940.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1] gi|256949724|gb|EEU66356.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5] gi|256952091|gb|EEU68723.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96] gi|256992912|gb|EEU80214.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1] gi|256999010|gb|EEU85530.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188] gi|257158179|gb|EEU88139.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ARO1/DG] gi|257161428|gb|EEU91388.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11] gi|257164118|gb|EEU94078.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98] gi|300849277|gb|EFK77027.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD Ef11] Length = 445 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 100 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 150 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 151 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 203 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 204 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 255 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 256 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 310 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 311 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 363 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 364 -LDLADEVFLCNI 375 >gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus ATCC 19977] gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium abscessus] Length = 490 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 25/317 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L + V A L + + +TG+ GKT+T ML +AL C Y+ V L Sbjct: 102 LLRPVVLADLMAGYRTLMVTGTHGKTSTTSMLIVALQH------C--GYDPSFAVGGELN 153 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + G ++ ++ E RP++ ++T I HL +F +E ++ E Sbjct: 154 EAGTNAHHGSGDVFVAEADESDGSLLQYRPNLIIVTNIEADHLDHFGSVEAYSAVFDEFA 213 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------QLRKWKQCS 267 E L G + + DD L ++H GI+ + +G + A+ QLR W+ Sbjct: 214 ETLGSEGVLVVCLDDPGAAALARRAHERGIR-VRGYGSADQAEAGDVPVAGQLRDWQFKD 272 Query: 268 EQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++QL G+S G HMA N L + + + A VD + L+ F EG Sbjct: 273 TGATAQIQLAGESAPRTMRLSVPGRHMALNALAAVVTAAEIGAAVDDVLDGLAGF---EG 329 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGEL 384 +R+ + + D+ Y +P ++ + +S I + G GR + V + Sbjct: 330 VRRRFELVGSVESVRVFDD-YAHHPTEVRTVLQAVSGIVAQQGFGRSVVVF--QPHLYSR 386 Query: 385 SQSFHIDLAEVLSLYNI 401 + +F + A+ LS+ ++ Sbjct: 387 TAAFATEFADALSIADL 403 >gi|307272893|ref|ZP_07554140.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855] gi|306510507|gb|EFM79530.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855] Length = 456 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKAD 266 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 375 -LDLADEVFLCNI 386 >gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 575 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 19 IGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +G PQ G V GI+ DSR++ P + + A+ G + G DF A GA ++ + Sbjct: 73 LGAGPQDAGEVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAAILTDPAGAE 132 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134 + +PV DD G + LA R + I ITG+ GKTTT ++ L Sbjct: 133 RAAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTAYLVEGGLRGAG 192 Query: 135 KTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185 ++ IG+ IG + P D M G + + V H Sbjct: 193 RSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRV 251 Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +AV ++P H+ SG+E+ AKA++F E++ +N+DD + L ++ Sbjct: 252 DGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSKLGVVNFDDEYGRRLVDEA 310 Query: 240 HALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + +F + D + R + ++ + +G+ + G N Sbjct: 311 SV----PVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAPLPGPFNVANT 366 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L IV++ A +D I A V G+ R Q + ++D ++ + A Sbjct: 367 LAA--IVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQPYLAVVDYAHKTD-----AV 419 Query: 357 ISVLSQISPHGEGRRIAVLG 376 SVL + EGR VLG Sbjct: 420 ESVLRSLRKVTEGRVHIVLG 439 >gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae MS11] gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] Length = 492 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|227519254|ref|ZP_03949303.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TX0104] gi|227555538|ref|ZP_03985585.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22] gi|229549750|ref|ZP_04438475.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC 29200] gi|293382403|ref|ZP_06628340.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712] gi|293388252|ref|ZP_06632768.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613] gi|307287939|ref|ZP_07567972.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109] gi|312900938|ref|ZP_07760232.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470] gi|312902694|ref|ZP_07761898.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635] gi|312908370|ref|ZP_07767334.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO 512] gi|312910557|ref|ZP_07769399.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO 516] gi|312950943|ref|ZP_07769853.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102] gi|227073266|gb|EEI11229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TX0104] gi|227175343|gb|EEI56315.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22] gi|229305019|gb|EEN71015.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC 29200] gi|291080179|gb|EFE17543.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712] gi|291082334|gb|EFE19297.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613] gi|306501084|gb|EFM70391.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109] gi|310625784|gb|EFQ09067.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO 512] gi|310631092|gb|EFQ14375.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102] gi|310633748|gb|EFQ17031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635] gi|311289105|gb|EFQ67661.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO 516] gi|311292037|gb|EFQ70593.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470] gi|315036717|gb|EFT48649.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0027] gi|315149313|gb|EFT93329.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0012] gi|315152214|gb|EFT96230.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0031] gi|315157019|gb|EFU01036.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0043] gi|315159827|gb|EFU03844.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0312] gi|315161519|gb|EFU05536.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0645] gi|315163609|gb|EFU07626.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1302] gi|315167362|gb|EFU11379.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1341] gi|315169555|gb|EFU13572.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1342] gi|315574498|gb|EFU86689.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0309B] gi|315576957|gb|EFU89148.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0630] gi|315581840|gb|EFU94031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0309A] gi|327535426|gb|AEA94260.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis OG1RF] Length = 456 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 111 ARFIEPYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 266 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 375 -LDLADEVFLCNI 386 >gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] Length = 484 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + V+ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289 + G+KT + +F K +DF+ + K S S +V L+ S+E I G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + N L + L +D + LS V P GR + N + +ID Y Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR +AP F A+ G DG FI+ A +GA + + + + A Sbjct: 21 PAGLLDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQAIDA---- 76 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 SIPVF V + L+ A + T++A+TG+ GKT+ T+++ A +++ Sbjct: 77 -SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAVTGTAGKTSVASFTRQIWAYAGHTAAMI 135 Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184 T + N G P++L ++ + V E L + R VR Sbjct: 136 GTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAGEGVTHAAMEASSHGLDQCRL--DGVRL 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + H+ +E +AK +F+ L G+ + + D + K+ Sbjct: 194 AAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKAATDAG 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I + G+ K L++ + + E+ + G+ EV G N L+ G+ Sbjct: 254 HDIRTVGR-KGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANALVAAGLAM 312 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A+ AL GR G +D Y P +++ +VL + Sbjct: 313 STGVEAKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLGSVR 366 Query: 365 PHGEGRRIAVLG 376 P GR I V G Sbjct: 367 PFTTGRVIVVFG 378 >gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] Length = 483 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 147/373 (39%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84 + G++IDSR I F A+KG DGH FI A++ GA + V+ D+ V G + Sbjct: 23 ITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIELGA-ISVLCEDLPEVLQEGITYVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L K ++ +TG+ GKTT +L + + Sbjct: 82 VESTEDAVGKVATL-FYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVC 140 Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183 N+I VP LA+M ++ E +G ++F Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAG---- 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A+ T + HL E +AK F+GL K N DD ++ + A Sbjct: 197 ---ALFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMIMVQNTKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ ++ ADF+ R + E ++E+ EV IG N+L G Sbjct: 252 --TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + LS H GR + +GF ++D Y P ++ ++ + ++ Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 G+G I V G Sbjct: 362 LD-GKGHVITVCG 373 >gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica ST-640] gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica 020-06] Length = 492 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 501 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 37/377 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 +G + IS+ S+ I F A KG DGH+FI +A+Q GA +V + + S Sbjct: 18 VGKNTSKLIERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGAHTIVC--EKIPSS 75 Query: 79 GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML---------- 126 I V D + AL ++ K +I ITG+ GKT+ +L Sbjct: 76 IHKKITYVLVPDSMNALGIISSNFYDHPTKKIKLIGITGTNGKTSVATILHQLFSKMGEK 135 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTH 180 T+ + + K Y + N I + L + + E+ + + R Sbjct: 136 NILISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEVSSHGIHQKRIAGL 195 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKS 239 L + V T I HL + S K FE L K +N DD + ++++K Sbjct: 196 LFQG--GVFTNITHDHLDYHESFDHYLSTKKFFFENLSKKAFALINSDDENSYKIIKD-- 251 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + Y +G KNA+F++ Q ++S QL ++ IG N+L Sbjct: 252 ---ILSKTYFYGLKKNANFKI----QILKESIHGSQLLIDGHKIFTKLIGTFNVYNLLAG 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +L D +K + P GR +++ N G ++D Y NP +K ++ Sbjct: 305 YATAILLGKKKDNILKKIKNIKPIRGRFEQF--ISNSGIRVIVD--YAHNPDGLKTVLNT 360 Query: 360 LSQISPHGEGRRIAVLG 376 L +I + +G+ I V+G Sbjct: 361 LKKIK-NDDGKLICVIG 376 >gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/Jali20/OT] gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/Jali20/OT] Length = 483 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LLQ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 6 LLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121 +A + SL P V ++ A + +A+ A L ++ +I ITG+ GKTT Sbjct: 62 -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165 ++ + + IG+ + +G + A M ++ + Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVM 175 Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E +GM+ LG +R L V+T I HL +EE +AK + F L + G Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNIISDHLDFHGSLEEYIAAKKQFFASLPEKGI 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N D + S A + S+ + AD++ + K S S ++ QG+ Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFP 286 Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 IG H N+L +L +V L D ++ + +G R L F Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ID Y P ++ +L Q+ P +GR I V G Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375 >gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] Length = 500 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 157/386 (40%), Gaps = 44/386 (11%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 GI + + I+ DSR + F A++G DGH+FI AV G+ VV + + Sbjct: 19 GIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDAVSLGSKAVVC--EELPETP 76 Query: 80 SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + + V D A+ ++A A + + +II +TG+ GKTTT ++ ++ Sbjct: 77 AERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNGKTTTARLMAGMMNDC---- 132 Query: 138 ACIGSYNNHIGVPLTLA--------RMPVDVD--FGIFELGMSHLGEIRFLTHLVRPHI- 186 G +IG L LA R + + +F + M+ G R + V H Sbjct: 133 ---GIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSI-MAERG-CRAVVMEVSSHAL 187 Query: 187 ------------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SF 231 AV T + HL +E ASAK +F + G + +N DD F Sbjct: 188 VLQRTFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSPEGFVVVNADDPRAGF 247 Query: 232 FELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + KS S + S+ F + + + + + G+ +V+ G Sbjct: 248 MAENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDADGRGYDVLFRLTGL 307 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L L + + +++LS P EGR + R A FF ++D Y P Sbjct: 308 FNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGD-FFAVVD--YAHTP 364 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ I L+++ P EG I V G Sbjct: 365 DALEKVIGTLNELKPE-EGELIVVFG 389 >gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 492 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 141/362 (38%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D + +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLTLAR----MPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188 L A PVDV ++ L S + + F + A+ Sbjct: 149 ALEEATHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245 T + HL +E + K+ +F GL+ +N DD + EL+ Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELVGRLKKDCPDL 258 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +Y +G S+ AD ++ + S+ Q + +G AQN+ + ++ Sbjct: 259 AVYGYGFSEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ ++ L+ P G R C +N G L+ Y P +++ A+S L +I P Sbjct: 319 NGYPLNNVLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis 961-5945] gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis G2136] Length = 492 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis 053442] gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis 053442] Length = 492 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] Length = 508 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFG 87 ++ DSR + P FFA++G DGHD+ AV++GA VVV D+ I + Sbjct: 25 LAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVEQPVDLPDEIVQVV----- 79 Query: 88 VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 VDD A+ + A I+ +TG+ GKTT +L L T A +G+ +N Sbjct: 80 VDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLESVLKQAGYTPAVVGTISN 139 Query: 146 HIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +G P L L R+ + D + E+ L + R + +AV Sbjct: 140 RMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHALMQSRVVGLTF--DVAVF 197 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDSF-FELLKAKSHALGIKT 246 T + P HL +E +AK +F+ + G T +N DD + +L++ + L Sbjct: 198 TNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFTAVVNTDDPYGAKLVRELNEPL---- 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S G + AD ++ +Q + + ++ + V +G +N+L +G +L Sbjct: 254 --SVGMHRGADVRVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENLLCAVGAGLVL 311 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + T + L+ + GR + L G ++D ++ + ++ A+ ++ + P Sbjct: 312 DLPITTIEQGLAAANRVPGRLEPVDNTL--GALIVVDYAHTGD--ALAKALEAMAALKPQ 367 Query: 367 GEGRRIAVLG 376 R I V G Sbjct: 368 ---RIITVFG 374 >gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70] gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70s] gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D(s)2923] gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis Sweden2] gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/150] gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/11023] Length = 483 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 53/395 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 6 LLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121 +A + SL P V ++ A + +A+ A L ++ +I ITG+ GKTT Sbjct: 62 -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165 ++ + + IG+ + +G + A M ++ + Sbjct: 116 VSCLVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVM 175 Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E +GM+ LG +R L V+T I HL +EE +AK + F L + G Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N D + S A + S+ + AD++ + K S S ++ QGK Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFL 286 Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 IG H N+L +L +V L D ++ + +G R L F Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ID Y P ++ +L Q+ P +GR I V G Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-DGRLIIVFG 375 >gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] Length = 492 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] Length = 485 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 148/384 (38%), Gaps = 30/384 (7%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL ++ SI + G++IDSR I F AIKG DGH FI A++ GA + Sbjct: 5 DLLSEVKTLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIESGAKAI 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 ++ V S I V+ + K+A K ++ +TG+ GKTT +L Sbjct: 65 LLED--VPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLVGVTGTNGKTTIATLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLG-EIRFL---TH 180 + + + N+I T P ++ M G E F+ +H Sbjct: 123 YNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKMVEAGCEYAFMECSSH 182 Query: 181 LVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + H + T + HL E +AK F+ L K N DD Sbjct: 183 AIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSLPKKAFAITNADDKNG 242 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 ++ A I ++ + ADF+ R + E ++++ GK EV IG Sbjct: 243 MIMVQNCKA----NIKTYSIQRMADFRARIIECHFEGMYLDI--DGK--EVGVQFIGKFN 294 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L G +L D + LS GR + R +GF ++D Y P + Sbjct: 295 VSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSP--EGFTAIVD--YAHTPDA 350 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + +S + + G+ I V G Sbjct: 351 LSNVLSAIHDVMEGKTGQIITVCG 374 >gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] Length = 484 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + ++ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289 + G+KT + +F K +DF+ + K S S +V L+ S+E I G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + N L + L +D + LS V P GR + N + +ID Y Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] Length = 487 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 45/376 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G +ID R +AP F A +G ++G DFI AV +V+ VA ++ V Sbjct: 23 ITGFAIDHRKVAPGTVFGAFRGSRFNGEDFIAQAVAD-GAAAIVSAPGVAVGSAIGGAVH 81 Query: 87 GVDDVLGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139 VDD + ARL ++ T +A+TG+ GKT+T E LT L + +A Sbjct: 82 IVDD-----EPRRLFARLAARFFAPFPDTTVAVTGTNGKTSTVE-LTRQLWRMAGFHAAS 135 Query: 140 -----IGSYNNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLV 182 + + + + LT P V F G+ + G++H G ++ T + Sbjct: 136 IGTLGVTTADEQVSTGLT---TPDIVTFLSNMAGLRKEGVTHAAFEASSHGLSQYRTEGL 192 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHA 241 A T ++ HL +E +AK +F E +++ G + DD + A A Sbjct: 193 PVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVDQDGAAVVWADDPRSVEVIAAVRA 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ + S G + +L + + ++++++GK+ EV IG + A N L+ G Sbjct: 253 RGVR-LLSVGAAGET-IRLVERTPTALGQTLKLEIEGKAREVKLPLIGAYQAANALVAAG 310 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL 360 +V ++ + L P RG+ R A+++ G +D Y P ++AAI L Sbjct: 311 LVVATGGEIGLTLANLQRVAPV--RGRLERAAISRTGAPIYVD--YAHTPDGLEAAIEAL 366 Query: 361 SQISPHGEGRRIAVLG 376 PH E R I V G Sbjct: 367 ---RPHTEARLITVFG 379 >gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] Length = 484 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + V+ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289 + G+KT + +F K +DF+ + K S S +V L+ S+E I G Sbjct: 238 GANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + N L + L +D + LS V P GR + N + +ID Y Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M01-240355] Length = 492 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis N1568] Length = 492 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVCRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] Length = 492 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens MI-1] gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens MI-1] Length = 462 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/361 (24%), Positives = 147/361 (40%), Gaps = 34/361 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 ARL + IA+ G+ GKTTT M + L S++ I + L+ + + Sbjct: 103 ARLMKEKKGIAVAGAHGKTTTTSMTALILEE--------NSFDPTIIIGGDLSNIGGNAK 154 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 G E ++ E L+ P+IAV+T I HL + E IA A + L G Sbjct: 155 LGQGEYMVAEADESDGSFLLLDPNIAVVTNIEDDHLDYYGTRENIAKAFRQFLAKLSAEG 214 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + DD +LK + L + + AD+Q++ + + + EV Q + + Sbjct: 215 LAVICLDDP---VLKEITTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEERL 271 Query: 282 EVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 ++ H GYH N + + I L D + +AL F G +R++ T Sbjct: 272 GMLELHVPGYHNLLNAMAAVAIGRHLNLDFEKIARALRKF---TGAKRRFQVIGKVNGIT 328 Query: 341 LIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HI 390 ++D+ Y +P +KA + +++ PH R + E QSF + Sbjct: 329 VVDD-YAHHPTEVKATLQAARTSHPGRIVTIFQPHRYSRTKQLF------KEFGQSFTNG 381 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 DL + +Y S + L G H + DA+P V Y T+ ++ GD+V+ Sbjct: 382 DLIILTDIYAASELPLEGVHTKLILDAIPLQEGQQVLYLPTLKDAADYLADYANPGDLVL 441 Query: 449 V 449 Sbjct: 442 T 442 >gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] Length = 483 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 148/373 (39%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84 + G++IDSR IA F A+KG DGH FI A+++GA ++ DM + G + Sbjct: 23 IKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIEQGAKAILCE-DMPEMKVEGVTYVK 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D G + L + K ++ +TG+ GKTT +L + + + Sbjct: 82 VESTEDAAGKVATLFYGDPSK-KLKLVGVTGTNGKTTVATLLYNMFRKMGYKCGLLSTVC 140 Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+I +P L RM ++ E + + R ++ + Sbjct: 141 NYIEDEAIPADHTTPDPIELNELLGRMVNTGCEYAFMECSSHAIAQKRISG--LKFTGGL 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E +AK F+ L K N DD ++ + A T+ Sbjct: 199 FTNLTRDHLDYHKTFENYRNAKKAFFDELPKGAFAITNADDKNGMIMVQNTKA----TVK 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIV 303 ++ ADF+ R +E +G +++ H +G N+L G Sbjct: 255 TYSTRSAADFKAR---------ILECHFEGMYLDIDGHEVGVQFIGKFNVSNLLTVYGAA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + +S H GR + +G+ ++D Y P +++ + + ++ Sbjct: 306 RMLGKQPEDILLVMSTLHSVSGRLEPIHSP--EGYTAIVD--YAHTPDALENVLKAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 +G+G+ I V G Sbjct: 362 L-NGKGKLITVCG 373 >gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 464 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 140/310 (45%), Gaps = 14/310 (4%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+AITG+ GKTTTKEM+ LS+ +K A S N+ L + D + +FE + Sbjct: 105 IVAITGTSGKTTTKEMIKHILSADRKVTATTLSSNSRTASLQYLLGIEDDTEAAVFETAV 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G++ +P I +IT I HL+ +E AK E+ + + GT+ +N +D Sbjct: 165 GSPGDVTNAGRYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLIINAED 224 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + S G + GK + DF+ + + KS +++ G G Sbjct: 225 MNTKKIDV-SRFRG--RLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDILVPGFG 281 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYN 347 H N L + V + + A K L F R + + L +G L+D++++ Sbjct: 282 EHQVYNALAAIAAVHDMGMPIPVAAKQLQSF-----RLLKKQLQLFEGINHSMLLDDTWS 336 Query: 348 ANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 S++AA+ VL+++ G+G ++IAV+G + ++G H E++ + + Sbjct: 337 ITTTSLEAALKVLNEL---GDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393 Query: 407 SGFHVLALKD 416 G H + D Sbjct: 394 IGEHARIMAD 403 >gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M0579] gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240149] gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis NZ-05/33] Length = 492 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 142/357 (39%), Gaps = 31/357 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310 S++AD ++ + S+ +E Q E H +G AQN+ + ++ + Sbjct: 266 SEHADIRITDFTASSDG--IEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] Length = 496 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 46/383 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIG 79 +N +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 20 LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFA 79 Query: 80 SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + + V V ++ L+ +A A K T++ ITG+ GKTTT ++ + + Sbjct: 80 NSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKS 139 Query: 138 ACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL 181 A +G+ N + G + + R D DF E+ L + R Sbjct: 140 AVMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYR--AEA 197 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSH 240 + +A+ T ++ HL + +EE A AK +F L + +N DD E L Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV-INADDEIGREWLAKLPE 256 Query: 241 ALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A+ + T F K+K F L+ E SW +L+ + IG Sbjct: 257 AVAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRL-------IGAFNV 309 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L + L D+ I+ + + GR + N ++ Y P ++ Sbjct: 310 SNLLTAFAGLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDAL 369 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 + A L H EG V G Sbjct: 370 EKA---LDAARLHCEGELWCVFG 389 >gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella rochalimae ATCC BAA-1498] Length = 484 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 149/377 (39%), Gaps = 48/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A+KG DG ++ A+Q+GA +++ + + V +LSIPV Sbjct: 21 ITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLSIPVI 78 Query: 87 GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V DV +KLA+AA T++A+TG+ GKT+ + I A IG+ Sbjct: 79 HVLDV---RHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135 Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185 + IG P+ L R+ ++ D G+ FE L + R HL Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLA--- 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKS 239 A T + H+ IE AK +F L L + D + + +A Sbjct: 193 AAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHR 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 L I F + Q + KQC E M + + + G N LM Sbjct: 253 QVLTIGRTGKFITLNRVEHQ--RLKQCVE-CRMGNNIYTFDLPLA----GDFQVTNALMA 305 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+ A D ++L GR + G +D Y P +++ V Sbjct: 306 AGLAIATNAPPDMVFRSLEKLQGAPGRLELV-GNTEDGAPVYVD--YAHKPEALE---QV 359 Query: 360 LSQISPHGEGRRIAVLG 376 L + P +GR I V G Sbjct: 360 LLSVRPFTQGRLILVFG 376 >gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] Length = 492 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 143/357 (40%), Gaps = 31/357 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310 S++AD ++ + S+ +E + E H +G AQN+ + ++ + Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] Length = 492 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D + ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDSLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 TLEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +Y +G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELAGRLKKDCPDLAVYGYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++ + S+ Q + +G AQN+ + ++ ++ Sbjct: 266 SEQADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] Length = 502 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 99/383 (25%), Positives = 173/383 (45%), Gaps = 51/383 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79 ++G+++DSR++ P F A++G + G +F A+ +GA ++ + + A Sbjct: 28 IHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTPGFDDQALSARCA 87 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135 ++P V + + +AAR + T+I +TG+ GKT+ + + AL +K Sbjct: 88 KQAVPCIAVHSLHAQVG--IIAARFYGDPGANMTVIGVTGTDGKTSVSQFIAHALG--RK 143 Query: 136 TYAC--IGSYNNHIGVPLTLARM-------PVDVDFGIFELGMSHLGE--IRFLTHLVRP 184 Y C +G+ G+P L R+ P+ + + +L H I +H + Sbjct: 144 EYRCGILGTLG--CGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVSSHALDQ 201 Query: 185 H--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +AV+T ++ HL A AKA +F+ E T+ +N DD F L+ Sbjct: 202 QRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQRPE-LHTVVVNVDDDFGRSLR 260 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMA 293 A HA I YS + A QLR + ++ + + L G V G +G A Sbjct: 261 ASVRHARVIG--YSLAGIETA--QLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLLGRFNA 316 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L LG + L + A++ LS+ P GR +RY ++G T++ + Y PA + Sbjct: 317 ANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYG---SEGRPTVVID-YAHTPAGL 372 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 +AA++ + + H GR V G Sbjct: 373 QAALAAMRE---HFAGRIWCVFG 392 >gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha710] gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis OX99.30304] Length = 492 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 506 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 ++ ++ DSR + AF I G +DGH F+ A++ GA ++ + V P Sbjct: 24 ISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGAAVLAGESAEVLEKAGRKYPDR 83 Query: 85 -VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTT----TKEMLTI---ALSSIK 134 V+D L +L++ R T I +TG+ GKTT K +LT+ SI Sbjct: 84 TFILVEDARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPTGSIG 143 Query: 135 KT--YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRP 184 T + G+ N P T + F F+ + +S + ++ + Sbjct: 144 TTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVEGIEF 203 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+ T ++P HL E AK ++F+ +K +N DDS K H+ + Sbjct: 204 DIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQAKKA---VVNIDDSGMAKDILKIHSGDV 260 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 T YS K +AD + + +++ E++ Q +S V IG + N+L Sbjct: 261 LT-YSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANIL 312 >gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 492 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 163/387 (42%), Gaps = 46/387 (11%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 IG +P ++ IS +SR + F I G DGH+F+ AV+ GA +V ++ Sbjct: 14 QQIGKLPNT-ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNL 72 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 ++ + V D A+ LA TI +TG+ GKTT ++ L+ + Sbjct: 73 DTNKATLII--VPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNE 130 Query: 135 KTYACIG------------SYNNHIGVPLTLARMPVDV-DFGIFELGM---SH-LGEIRF 177 + A IG S NN LT M + + G+ + M SH L + R Sbjct: 131 LSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVAMEVSSHGLEQGRL 190 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNYDDSFFE 233 + +A T ++ HL +EE A+ K ++F L K LN DD+++E Sbjct: 191 WG--IDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYE 248 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + ++ I S+G + ADF+ K +++ E+ S +V +G Sbjct: 249 YFQKRTPV----QIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNV 304 Query: 294 QNMLMTLGIV----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + V SI D+ +K++ GR ++ + N+ + ID Y Sbjct: 305 YNVLAAIASVYVKESIPLTDL---VKSIEGTPTPPGRMEKLESSGNRHIY--ID--YAHT 357 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ AI+ L P + + I V+G Sbjct: 358 PDALTKAINSL---LPFKQNKLIVVVG 381 >gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +Y +G Sbjct: 209 HLDYHGTMEAYGTIKSRLFYWHGLKHA---IINVDDEYGAELIGRLKKDCPDLAVYGYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q +G AQN+ + ++ +D Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M6190] gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis ES14902] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|315174254|gb|EFU18271.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1346] Length = 456 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR T IA+TGS GKT+T +L LS I T IG H G P D D Sbjct: 111 ARFIELYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGTGH-GEP--------DAD 161 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F FE + H + P A++T I H + IE++ SA + ++K Sbjct: 162 FFAFEA-------CEYRRHFLAYSPDYAIMTNIDFDHPDYYKSIEDVFSAFQTMAHQVKK 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 IF DD + L+++ +Y +G S+ D Q R ++ +E S +V + Sbjct: 215 --GIFAYGDDKYLRQLESEV------PVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDD 266 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+H N L + + D+ + + F +G + R + + Sbjct: 267 FVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSF-----KGVKRRFSEKKVS 321 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +I + Y +PA +KA I +++ PH R IA++ + E Sbjct: 322 DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEA------- 374 Query: 389 HIDLAEVLSLYNI 401 +DLA+ + L NI Sbjct: 375 -LDLADEVFLCNI 386 >gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT 98-5489] gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT 98-5489] Length = 489 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 126/310 (40%), Gaps = 65/310 (20%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------PLTLARMPVD 159 TIIA+TGS GKT+ K L L K YA S N G+ PLT Sbjct: 163 TIIAVTGSYGKTSLKNFLIQVLQDDFKVYATPRSINTLTGIIADINQNLSPLT------- 215 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--L 217 D I E G +G+I+ + L++P IAV+ I PAH+ F +E I K EI + L Sbjct: 216 -DIYIVEAGARGVGDIKEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVKYEILQSDRL 274 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-- 275 E+ Y ++ K A N +FQ + C Q+ E+ Sbjct: 275 ERAYI----YKEN------TKPEAF------------NIEFQGK--VICFPQNISEINAD 310 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSI---------LTADVDTAIKALSVFHPKEGR 326 L+G S + +G + +L +++I L + IK + R Sbjct: 311 LEGTSFVLTENGEKIQLETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLERVNHR 370 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + +N ++D+SYN N M AI +++ GR++ V + E S+ Sbjct: 371 LS--KIVVNDK--IILDDSYNGNLEGMLEAI----RLASLHTGRKVIVTPGLVES---SK 419 Query: 387 SFHIDLAEVL 396 ++DLA + Sbjct: 420 EANVDLARAI 429 >gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] Length = 485 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 150/385 (38%), Gaps = 32/385 (8%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+ ++ +I + GI+IDSR I F A+KG DGH FI A++ GA V Sbjct: 5 DLLKGVKTLNINGNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELGAKAV 64 Query: 69 VVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V TD+ + + V + +G + + + K ++ +TG+ GKTT + Sbjct: 65 LVEDMPTDLKEDV--TYVQVASTETEVGKIATIFYGNPTK-KLKLVGVTGTNGKTTIATL 121 Query: 126 LTIALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---T 179 L I + N+I T P ++ M G E F+ + Sbjct: 122 LYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECSS 181 Query: 180 HLVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H + H V T + HL E +AK F+ L K N DD Sbjct: 182 HAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSLSKNAFAITNADDKN 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++ A I ++ + ADF+ + + E ++EV GK EV IG Sbjct: 242 GMIMVQNCKA----NIKTYSMQRMADFRAKIIECHFEGMYLEV--DGK--EVGVQFIGKF 293 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+L G +L D + ALS GR +GF ++D Y P Sbjct: 294 NVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSP--EGFTAIVD--YAHTPD 349 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 +++ + + + G+ I V G Sbjct: 350 ALENVLGAIHDVLEGKNGKVITVCG 374 >gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] Length = 493 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 36/371 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL------VVVNTDMVASIGS 80 + G++ DSR++AP F A+ G DG FI A+ GA + D A++ + Sbjct: 30 IAGLTADSRAVAPGWLFAALPGVKADGRAFIPAALAAGASAVLAPEGTALPPDAPAALVT 89 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + P A ++A A AT++A+TG+ GKT++ + +T A + Sbjct: 90 AANP-------RQAFARMAAAFAGAQPATVVAVTGTNGKTSSVSFTRQIWDRLGRTAASL 142 Query: 141 GSYNNHIGV-----------PLTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHI 186 G+ GV P++L +M ++ + G+ L M S G ++ VR Sbjct: 143 GTLGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDALAMEASSHGLDQYRLDGVRLSA 202 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + HL ++ +AKA +F E L + G LN DD F L A G + Sbjct: 203 AAFTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAVLNADDPAFPTLAALCRDRG-Q 261 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ +G+S +L + ++++L G+ V+ +G A N+L LG+ Sbjct: 262 SVLDYGRSAKT-LRLAGVSAKAHGQSLDLELFGRHHSVLLPLVGDFQAMNVLCALGLAIA 320 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A VD A+ L+ EG R + + Y P + ++ L + P Sbjct: 321 TGAPVDAAVATLASL---EGVPGRLEMVARRASGAPVYVDYAHTPDGL---VTALRALRP 374 Query: 366 HGEGRRIAVLG 376 H G+ + V G Sbjct: 375 HCRGKLVCVFG 385 >gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha153] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 139/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 141/369 (38%), Gaps = 55/369 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188 L PVDV ++ L S + + F + A+ Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245 T + HL +E + K+ +F GL+ +N DD + EL+ Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---VINVDDEYGAELVGRLKKDCPDL 258 Query: 246 TIYSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 +YS+G S+ AD ++ + S+ W E + + + + G AQN+ Sbjct: 259 VVYSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAA 311 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++ +D + L P G R C +N G L+ Y P +++ A++ Sbjct: 312 CIALLCANGYPLDKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALA 367 Query: 359 VLSQISPHG 367 L +I P G Sbjct: 368 TLQEIKPQG 376 >gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] Length = 484 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 38/388 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + ++ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-G 289 + G+KT + +F K +DF+ + K S S +V L+ S+E I G Sbjct: 238 GANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVNLE--SIEEFSINIPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + N L + L +D + LS V P GR + N + +ID Y Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP--GRCELVAKEKNLPYSIIID--YAH 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++LS + + R I+V G Sbjct: 352 TPDGLE---NILSTVKAFTKNRMISVFG 376 >gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha275] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] Length = 492 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 41/327 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ D+R + P F I G DGH+ AVQKGA LVV + + +++PV Sbjct: 25 ITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGATLVVASEPI-----EVAVPVI 79 Query: 87 GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V+D + A+ LA + LR +I +TG+ GKTT +L K+ I Sbjct: 80 YVNDTMKAMAILAATFYHHPSQDLR----VIGVTGTNGKTTVTHLLDYIFHDHKEKTGVI 135 Query: 141 GSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185 G+ IG V T P + M G + + V H Sbjct: 136 GTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSG-VATCSMEVSSHSLVQGRVWGTDFD 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 IA+ T ++ HL +E+ A AK+ +F L K LN+DD + K+ Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRSFEEKT 254 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++S+G + ADF+ + + + + + EV +G N L Sbjct: 255 AA----RVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSNALAA 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326 + D+ + I+++ GR Sbjct: 311 IAGAYAAGLDLTSVIQSIEKISGVRGR 337 >gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris RCH1] Length = 486 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 38/315 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF LL G +PQ I DSR + P + F A+ G DG FI AV +GA Sbjct: 7 TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122 +VV D + + + V DD AL L AR + + ++ +TG+ GKTT Sbjct: 58 TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALG-QARYGTASLPFPVVGVTGTNGKTTI 116 Query: 123 KEMLTIALSSIKKTYACIGS----YNNHI-GVPLT----------LARMP-VDVDFGIFE 166 +L +S + +G+ + H+ PLT L +M VD E Sbjct: 117 TYLLEHLFASAGRRCGVLGTVSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFL 225 + L + R +R AV+T + HL +E +AKA +F L + G + Sbjct: 177 VSSHALDQERVAG--IRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAV 234 Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQS-WMEVQLQGKSME 282 N DD + LL A+G G + L + +CS + + +G++ E Sbjct: 235 NADDPWGRRLLADLPGAVGFALT---GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWE 291 Query: 283 VVHHGIGYHMAQNML 297 V +G H A N+L Sbjct: 292 VDSPLVGAHNASNLL 306 >gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actF] Length = 526 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%) Query: 17 HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++G+ P+G V GI+ DSR++ P + + A+ G + G DF A GA + Sbjct: 27 EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 86 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125 + + + +PV V D G + A+AAR+ I ITG+ GKTTT + Sbjct: 87 TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 144 Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170 + L + + IG+ IG L R P D G+ + M S Sbjct: 145 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 204 Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 H LG + + H +AV ++P H+ SG+E+ AKA++F + G + N Sbjct: 205 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 258 Query: 227 YDDSFFELL 235 YDD + L Sbjct: 259 YDDEYGRRL 267 >gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] Length = 492 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 136/353 (38%), Gaps = 23/353 (6%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSK 254 HL +E + K+ +F + + +N DD + EL+ +Y +G S+ Sbjct: 209 HLDYHGTMEAYDAIKSRLFYWQDLQHAV-INIDDEYGAELVCRLKKDCPDLAVYGYGFSE 267 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 268 RADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVL 327 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 L P G R C +N G L+ Y P +++ A+S L +I P G Sbjct: 328 DVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKPQG 376 >gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] Length = 481 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 159/384 (41%), Gaps = 42/384 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ DSR I + F A++G DGH +I A++ GA V+V+ + + V Sbjct: 24 GMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAKGVLVSKKVEP---EFPVEYILV 80 Query: 89 DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D+ L K+A + K II ITG+ GKTT+ +L L K+ A IG+ Sbjct: 81 KDLRKNLGKIASNFYGYPQKKLKIIGITGTNGKTTSTYLLESILG--KEKVARIGTVEYK 138 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVITTI 192 IG + A I ++ + + + +L V H +A T + Sbjct: 139 IGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVSSHALSLGRVDMLEFDVASFTNL 198 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL ++ AK ++F L+ + +N DD + + L + YS+ Sbjct: 199 TLDHLDYHENMDNYFQAKRKLFTMLKDSKKSSINIDDIYGDRLYKEFGG------YSYSL 252 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 +K+AD + S+ ++ + L G+ E +G + N+L +GI L + Sbjct: 253 TKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAILGRYNLYNVLGVIGIALQLGIGKNI 312 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 ++ L GR + C Q + ++D ++ + A ++L I+ +GR I Sbjct: 313 ILEKLKDIKGAPGRFELVNCG--QDYIVVVDYAHTGD-----ALENILKSINELKKGRVI 365 Query: 373 AVLG-----DMCE---MGELSQSF 388 V G D + MGE++Q Sbjct: 366 TVFGCGGDRDATKRPIMGEIAQRL 389 >gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actG] Length = 521 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%) Query: 17 HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++G+ P+G V GI+ DSR++ P + + A+ G + G DF A GA + Sbjct: 22 EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 81 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125 + + + +PV V D G + A+AAR+ I ITG+ GKTTT + Sbjct: 82 TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 139 Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170 + L + + IG+ IG L R P D G+ + M S Sbjct: 140 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 199 Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 H LG + + H +AV ++P H+ SG+E+ AKA++F + G + N Sbjct: 200 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 253 Query: 227 YDDSFFELL 235 YDD + L Sbjct: 254 YDDEYGRRL 262 >gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 490 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 152/381 (39%), Gaps = 52/381 (13%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 PQ ++ GISI S+ + FFA KG DGH FI A+QKGA VV V +++ Sbjct: 21 PQKWIKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPVLLHKNIT 80 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V D LG ++ K ++ ITG+ GKT+ +L + + I Sbjct: 81 YVIVKNSMDALGTISS-NFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEKSILIS 139 Query: 142 SYNNHIGVPLTLARMPVD------VDFGIFELGMSHLGEIRFLTHLVRPH------IA-- 187 + +G+ + P VD + L +S ++ V H IA Sbjct: 140 T----MGIKILSQEFPTKHTTPSIVDINKY-LNLSIQKGCKYAFMEVSSHGIHQKRIAGL 194 Query: 188 -----VITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDD-SFFELLKAKSH 240 V+T I HL E S K FE L K +N DD + E++K Sbjct: 195 LFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIKN--- 251 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQN 295 + IY +G K D++++ M+ + G + + H IG N Sbjct: 252 --VLAKIYFYGLKKKTDYRIK---------IMKKNIHGNQLLIDGHKFFTFLIGEFNVSN 300 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L +L + ++ ++ P +GR +++ G ++D Y NP +K Sbjct: 301 LLACYATAILLGKKKEEILQKINTIPPIKGRFEQFISY--SGIRIIVD--YAHNPDGIKN 356 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + + +I E R I ++G Sbjct: 357 LLKAIQEIKKQ-EERLICIIG 376 >gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis FAM18] gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis FAM18] Length = 492 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 84/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S++AD ++ + S+ W E + + + + G AQN+ + ++ Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + L+ P G R C +N G L+ Y P +++ A++ L +I P Sbjct: 319 NDYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis 8013] Length = 492 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I + F A G + DG +I A+ GA V + D + ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] Length = 486 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 144/364 (39%), Gaps = 39/364 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G +P+ + ++IDSR I AF IKG DGHDF A +GA L++ M Sbjct: 17 GPLPE-HIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQGATLIITEKPMTIDNA 75 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKK 135 ++ + V LG L AA+ + +I +TG+ GKT+ +L L + + Sbjct: 76 TV-VEVESTSRTLGLL-----AAKFYDYPSKLLHMIGVTGTNGKTSVAGILHSMLMELGE 129 Query: 136 TYACIGS--YN---------NHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHL 181 A G+ +N N LT +M D D + +S G + Sbjct: 130 KSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHMTMEVSSHGLVLGRLAG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF-ELLK 236 V A+ T + HL +EE AKA +F + L LN DD + EL K Sbjct: 190 VEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAILNADDPWSKELAK 249 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 H +Y++G +A FQ + + + + V +G N Sbjct: 250 MTPHP-----VYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLLGEFNVSNA 304 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L ++ + +D +KAL+ P EGR ++ F ID Y P +++ A Sbjct: 305 LASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAPISIF--ID--YAHTPDAIEKA 360 Query: 357 ISVL 360 I + Sbjct: 361 IDAV 364 >gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] Length = 496 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 148/380 (38%), Gaps = 51/380 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR A F I G H D H FI +A + GA V+ D VA +S V Sbjct: 25 ITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAGARAVLTERDKVAVPPGIS--VL 82 Query: 87 GVDDVLGALNKL--------AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V D+ AL+ + A A R +I ITG+ GKTTT ++ L + Sbjct: 83 HVPDLQEALDLIVPYFYDYPARAMR------VIGITGTNGKTTTSYLVRAMLRHAGRRVG 136 Query: 139 CIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182 IG+ + I + LA M +D + E+ L + R + Sbjct: 137 LIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGRVAG--I 194 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-----EGLEKTGTIFLNYDDSFFELLKA 237 AV T + HL +E A AKA +F +G+++ T LN DD+ ++++A Sbjct: 195 EFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADDAAAKMMRA 254 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNM 296 +H + ++G A RK + + + + G + V GI G N+ Sbjct: 255 HTHC----PLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNVYNV 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L G AL+ F GR + R Q F ++D Y P M+ Sbjct: 311 LAAAGAALAEQVTASDITAALAAFSGVPGRFELVRA--GQDFSVIVD--YAHTPDGMENV 366 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + ++ GR I V G Sbjct: 367 LRTARAVT---TGRIITVFG 383 >gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M13399] Length = 492 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 84/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S++AD ++ + S+ W E + + + + G AQN+ + ++ Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + L+ P G R C +N G L+ Y P +++ A++ L +I P Sbjct: 319 NGYPLDNVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] Length = 484 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 27/287 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA ++ Sbjct: 6 LLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLI 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V D+ I + V D AL ++ + K II ITG+ GKTT+ ++ Sbjct: 66 VQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIK 122 Query: 128 IALSSIKKTYACIGSYNNHIG---------VPLT-----LARMPVD--VDFGIFELGMSH 171 L IG+ N+IG P + L + VD V++ + E+ SH Sbjct: 123 SILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS-SH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + + ++ + T + HL E +AK ++F E++ +N DD + Sbjct: 182 SLELDRV-YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLF---ERSNHSIINLDDPY 237 Query: 232 FELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + G+KT + +F K +DF+ + K S S +V L+ Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE 284 >gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae CWL029] gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae J138] gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae TW-183] gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae CWL029] gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae J138] gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae TW-183] Length = 483 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 103/455 (22%), Positives = 179/455 (39%), Gaps = 62/455 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL +Q G V V ++ DSR ++ + F A KG YDG+DF + A+ GA Sbjct: 3 LKELLHGVQAKIYGKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLR------SKATIIAITGSVGK 119 +A SL P V ++ L +L + SK I +TG+ GK Sbjct: 62 --------IAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPL---------TLARMPVD-V 160 TT ++ L S +K +G+ + +G P T+ R D V Sbjct: 114 TTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAV 173 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + +G++ G + + AV+T I HL E +AKA++F + + Sbjct: 174 VMEVSSIGLAS-GRVAYTNF----DTAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPS 228 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G + +N D + + A + ++G AD++ + S + + + Sbjct: 229 GMVVINTDSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284 Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + IG + N+L + V + L D++ ++ + + P G R L Sbjct: 285 IACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCP 341 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ID Y P ++ ++ L ++ P G GR I V G C G+ +S +A+V+ Y Sbjct: 342 VYID--YAHTPDALDNVLTGLHELLPEG-GRLIVVFG--CG-GDRDRSKRKLMAQVVERY 395 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 GF V+ + +E DG + Sbjct: 396 --------GFAVVTSDNPRSEPPEDIVNEICDGFY 422 >gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 492 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 23/258 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ + I+ DSR P FF +KG +DGH F+ A++ GA VV + ++V Sbjct: 11 PEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEELVHY--EEG 68 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I F V+DV+ LN +A A + +TG+ GK + +++ L+ K T I Sbjct: 69 ILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQEVLNPDKAT-GNI 127 Query: 141 GSYNNHIGV----PL----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 GS + G PL ++ + VD L +S +G + V Sbjct: 128 GSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVEQKRVQSVHFDY 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL ++ AK + F+ L++ N DD + + S A Sbjct: 188 AIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEKACAITNIDDPYGLKMVEDSEA----R 243 Query: 247 IYSFGKSKNADFQLRKWK 264 + ++G S+ A + +R+++ Sbjct: 244 VVTYGMSEEAMYSIRQYR 261 >gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter felis ATCC 49179] gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter felis ATCC 49179] Length = 486 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 22/279 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168 I+AITGS GKT+ K L L S Y+ +GS N +G+ + + +P + I E G Sbjct: 163 ILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQDINQNLPENTTLYIAEAG 222 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 G+I ++ L+ H AVIT + H+ F ++ + KAE+ E + F +++ Sbjct: 223 ARQPGDIAAISQLLNHHYAVITEVGAQHIEYFKTLDNVIKTKAELLES-SRLEHAFCHHN 281 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 ++ EL+ K K + G Q+R+ + E + E+ L + + Sbjct: 282 EALEELISQKD-----KITFYPG-------QVRRVQATLEGTSFELLLGEQWARFESKIL 329 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G +N+ + + + +D ++++ +P R + L+ +ID+ +N Sbjct: 330 GAFNVENITLAVMVGFYFGIPIDQLQRSVAKLNPVPHRLQ----VLHLNDKVIIDDGFNG 385 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 N M A+ ++S GR+I V + E E S + Sbjct: 386 NLKGMLEAV----RLSSLYVGRKIIVTPGLVESDEESNT 420 >gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] Length = 499 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 145/364 (39%), Gaps = 38/364 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR++ P + F + G H DGH FI ++ G +++ + L IP V DV Sbjct: 37 DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLLIQR----PVSGLPIPWIQVTDVR 92 Query: 93 GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 A+ +A A K + A+TG+ GK+TT M+ L + +G+ G Sbjct: 93 AAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVRSILQNCGVKCGLLGTIVYDDGSK 152 Query: 151 LTLARMPVD------------VDFGIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAP 194 LA VD G M SH + + R L AV T + P Sbjct: 153 SVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHGIAQGRLSGCLY--DGAVFTNLTP 210 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E AKA +F K G + N L A+ + + + Sbjct: 211 EHLDFHGTMENYYEAKAALFRKYLKPGAAVAPNAASEHGRRLAAEFPQAMTWALEAPARL 270 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDT 312 + A+ +L + S ++ G+ M VH + G H +N L + D Sbjct: 271 QGANVKLD-----IDGSEFDLIFDGRKMGRVHIPLSGRHNVENALGAAAVCLAEGCDEKK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L++ GR +R L+ G +ID ++ A+ S+KA +L + P EGR + Sbjct: 326 VVAGLALMPQVPGRMERLN--LDNGVRVVIDYAHTAD--SLKA---LLETLRPLTEGRLV 378 Query: 373 AVLG 376 ++ G Sbjct: 379 SLFG 382 >gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis CU385] gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] Length = 492 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/355 (23%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + + G+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELVGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] Length = 499 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 157/371 (42%), Gaps = 35/371 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G P V+ ++ DSR A+FA++G DGH FI A+ KG G VVV ++ S+ Sbjct: 19 GRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFISDALSKGVG-VVVCEEIPVSVD 77 Query: 80 SLSIPVFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIAL--SS 132 + D A A+ LR +I +TG+ GKTTT ++ L S Sbjct: 78 ERCCYIRVADCRTALAAAAAEWFGHPASSLR----VIGVTGTNGKTTTARLIRTMLDRSG 133 Query: 133 IKKTYACIGSYNNHIG-VPLTLAR-MPVDVDFGIFELGMSHLGE------------IRFL 178 +K Y IG+ IG + L R P +D M + G + Sbjct: 134 VKTGY--IGTGQALIGDESIVLERTTPEAMDLHALFRKMVNCGCEAVVMEVSSHALVLHR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA- 237 T + + AV T + P HL + ++E SAK +F + G +N DD++ ++ Sbjct: 192 TEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQVAPDGFGIVNADDAWGSMMAGA 251 Query: 238 -KSHALGIKTIYS--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L T+ S FG + + + R + + S + VQ+ G++ G Sbjct: 252 FSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSVTVQMNGRACRASFLLPGLFNVM 311 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 NML L + ++TA +++ EGR + + + G F+ I + Y P +++ Sbjct: 312 NMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPV--SDDGGLFSAIVD-YAHTPDALE 368 Query: 355 AAISVLSQISP 365 I L+++ P Sbjct: 369 KVIGALNEVRP 379 >gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 498 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 120/277 (43%), Gaps = 37/277 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F ++LQ+++ S G + + GI+ DSR P F A++G DGHD+IL AV GA Sbjct: 3 FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62 Query: 67 LVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120 V++ DM+ I +P D AL L +AR + + +I +TG+ GKT Sbjct: 63 AVILQKDMILPDYIAWARVP-----DSRKALALL--SARFYNYPSRRLKMIGVTGTNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLG----E 174 TT ++ + IG+ N IG + + P D M G Sbjct: 116 TTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVA 175 Query: 175 IRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE----KTGT 222 + +H + H IAV T + HL +E+ +AK+ +F GL+ K G Sbjct: 176 MEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGA 235 Query: 223 IF--LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + +N DD A+ L + ++G K AD Sbjct: 236 KYAIINADDE----AAARLTRLSGGQVITYGMVKKAD 268 >gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] Length = 506 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 114/275 (41%), Gaps = 27/275 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL D L A Q V GI+ DSR++ P + + A+ G G DF+ A Sbjct: 15 TPLAELADQLGAAQPDRTA-----DVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAA 69 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGK 119 GA V+ + + +PV V+D + +LA R + I ITG+ GK Sbjct: 70 SLGAVAVLTDPGGAERAAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRF 177 TTT ++ L + K T IG+ IG + P D M G + Sbjct: 130 TTTAYLVEGGLKTAKAT-GLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERG-VEA 187 Query: 178 LTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + V H +AV T ++P H+ SG+E+ AKA++F ++ Sbjct: 188 VAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRLGI 246 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 +N DD + L A+ + + T YS +AD++ Sbjct: 247 VNADDEYGRRL-AEEATVPVVT-YSAEGHPDADWR 279 >gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori Shi470] gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori Shi470] Length = 470 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+ K+ L L + T+A S N +G+ + Sbjct: 135 AKDKIASLKNLK----VIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDI 190 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D D I E G + G+I+ +THL+ PH+AV+ + HL F +E I KAE Sbjct: 191 NQNLDDRSDIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 250 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 251 LLDSKRLEK 259 >gi|148907754|gb|ABR17003.1| unknown [Picea sitchensis] Length = 583 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H+A N + L + K+L+ F P + R C + +I+++YNA Sbjct: 405 GLHLAMNACAAGAVAVSLGIPLPQVGKSLANFRPAKMRLNIENC---KNKIRIINDAYNA 461 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM AA+ +L I +GRR+A+LGDM E+G+ + H+D+ ++ I V ++G Sbjct: 462 NPVSMVAALELLHSID--CKGRRVAILGDMLELGKFGKKAHLDVIKLCLELGIELVGIAG 519 Query: 409 FHVL-ALKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKSS 452 + A+K A S +D L Q GDVV+VK S Sbjct: 520 LQFMEAIKVADLTSAEFSVISALDSESLASQIGKKFTAGDVVLVKGS 566 >gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] Length = 130 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRS P + F A+KG +D HDF+ +GA +V+ S ++P V Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR----SPAEWNLPALKVA 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 D AL LA R+R ++A+TGS GKTT K Sbjct: 85 DTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118 >gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 572 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 151/371 (40%), Gaps = 31/371 (8%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V GI+ DSR++ P + + A+ G + G DF A GA V+ + + +P Sbjct: 81 GEVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAAVLTDPAGAERAAATGLP 140 Query: 85 VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V +D + +LA R + + ITG+ GKTTT ++ L + + IG+ Sbjct: 141 VLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTAYLVEGGLRAAGRPTGLIGT 200 Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187 IG + P D M G + + V H +A Sbjct: 201 VEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVA 259 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-T 246 V ++P H+ SG+E+ AKA++F E++ +N+DD + L +S G+ T Sbjct: 260 VFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSHRGVVNFDDEYGRRLLTES---GVPVT 315 Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S +AD+ + + S + V +G+ + G N L IV++ Sbjct: 316 SFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAA--IVTL 373 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A VD I A + G+ R Q + ++D ++ + A SVL + Sbjct: 374 AVAGVDPQIAADGIAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVESVLRSLRK 428 Query: 366 HGEGRRIAVLG 376 EGR VLG Sbjct: 429 VTEGRVHIVLG 439 >gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis Z2491] gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis Z2491] gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240013] Length = 492 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 138/355 (38%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++ + S+ Q + +G AQN+ + ++ +D Sbjct: 266 SEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDN 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis WUE 2594] Length = 492 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 31/357 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL+ +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDGYGAELIGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310 S++AD ++ + S+ +E + E H +G AQN+ + ++ + Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] Length = 483 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L +F D++ I + I+ DSR AF AIKG DGH +I A++K Sbjct: 7 LISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKK 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 GA L++ D+ G I V+D AL +++ + K ++A+TGS GKTT Sbjct: 67 GASLIIHTEDVTCEEG---ISYIRVNDPRKALAQISNLIYDFPSKKMELVAVTGSNGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG 148 T ++ + I A IG+ N H+G Sbjct: 124 TSRLIAFLMGEIFGDSASIGTNNAHVG 150 >gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str. Sheeba] gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str. Sheeba] Length = 493 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160 A L+S +IAITGS GKT+TK L L + +A S N +G+ + + D Sbjct: 163 ASLKS-LKVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIANDINQNLEDSS 221 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + I E G + G+I+ +THL+ PH+AVIT + HL F +E I KAE+ + Sbjct: 222 EIYIAEAGARNKGDIKEITHLIEPHLAVITEVGEQHLEYFKTLENICETKAELLD 276 >gi|317182049|dbj|BAJ59833.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F57] Length = 493 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + YA S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+T + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] Length = 504 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 136/319 (42%), Gaps = 34/319 (10%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 D+++ I+ +I G +P VN IS DSR I + F AIKG DGH++I + +GA L Sbjct: 11 DIIENIKIKTIYGSLPTK-VNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQGAAL 69 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + ++ ++ V ++ + LA +K +A+TG+ GKT+ ++ Sbjct: 70 VIASRYEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTVAVTGTNGKTSISTLVH 129 Query: 128 IALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L + ++ + IG+ + + P+ L DV ++G H +I+ L H Sbjct: 130 NMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEASSH 189 Query: 186 -------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-------L 225 +A+ T + H+ ++ A K+ +F L G F L Sbjct: 190 AMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTL---GNNFSEAKYGVL 246 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----M 281 N DD ++ ++ S L + I + ADF KQ SE + KS Sbjct: 247 NKDDEYYSIM---SKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEY 303 Query: 282 EVVHHGIGYHMAQNMLMTL 300 E + IG M N+L L Sbjct: 304 ECQTNYIGDFMVSNVLAAL 322 >gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] Length = 512 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 17/228 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ IS DSR + P F A++G DGH FI AV++GA V+ ++ + S+P Sbjct: 25 VSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVERGAAAVLCE-EIPPVLPDASLPYL 83 Query: 87 GVDDVLGALNKLAVA-ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL A S A +I +TG+ GKTTT ++T L++ IG+ Sbjct: 84 RVEDARQALALAARQFYGFASDALHVIGVTGTNGKTTTARLITAMLNACGIRTGYIGTNL 143 Query: 145 NHIG---VPL-----------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 G +PL L R +D + + +S + + + H AV T Sbjct: 144 CTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQRVYGITFHAAVFT 203 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ HL ++E A AK ++FE L G +N DD E + +K Sbjct: 204 NLSMEHLDFHKTMQEYAGAKRQLFEQLSPQGFAVINSDDPRAEEMVSK 251 >gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] Length = 492 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 83/367 (22%), Positives = 140/367 (38%), Gaps = 51/367 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188 L PVDV ++ L S + + F + A+ Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCS-------AI 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247 T + HL +E + K+ +F + + +N DD + EL+ + Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHDLQHAV-INVDDEYGAELVGRLKKDCPDLVV 260 Query: 248 YSFGKSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 YS+G S+ AD ++ + S+ W E + + + + G AQN+ + Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACI 313 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ +D + L P G R C +N G L+ Y P +++ A++ L Sbjct: 314 ALLCANGYPLDKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATL 369 Query: 361 SQISPHG 367 +I P G Sbjct: 370 QEIKPQG 376 >gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] Length = 496 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 96/407 (23%), Positives = 165/407 (40%), Gaps = 49/407 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPL +F L + G + + +N +++DSR + + F A+KG DG FI A Sbjct: 1 MNPLLSFFPEL-----NHWGELKE--LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53 Query: 61 VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATII 111 +++GA LV+ D + + V V ++ L+ +A A K T++ Sbjct: 54 IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF 165 ITG+ GKTTT ++ + + + A +G+ N + V T + + + + F Sbjct: 114 GITGTNGKTTTAQLFSQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173 Query: 166 -ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 ELG +S G ++ + +A+ T ++ HL + +EE A AK +F L Sbjct: 174 VELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL 233 Query: 218 EKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQ 269 + +N DD AK A+ + T F K+K F L+ E Sbjct: 234 SSKQQV-INADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFES 292 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 SW +L+ + IG N+L + L D+ ++ + + GR + Sbjct: 293 SWGNGELKSRL-------IGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMEC 345 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 N ++ Y P +++ A L H EG V G Sbjct: 346 LISEENAEESPMVIVDYAHTPDALEKA---LDAARLHCEGELWCVFG 389 >gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] Length = 482 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 147/368 (39%), Gaps = 41/368 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + + F IKG DGH +I A + GA +V++ ++ ++P V Sbjct: 26 IQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNGAAAIVISEEV------ENVPDCTVI 79 Query: 90 DVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V LA+ + K II ITG+ GKTT+ M+ L + +G+ Sbjct: 80 KVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTSTFMMKSILETAGYKVGLVGTIA 139 Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P +L + VD V + + E+ L R + VR A+ Sbjct: 140 NYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVMEVSSHSLYLDR--AYGVRFSEAI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK +F+ T +N DD + + K ALG K Y Sbjct: 198 FTNLTRDHLDFHKTFENYYKAKLILFKN---TINSVINIDDKYGD--KVYEDALGTKITY 252 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + +K AD + S + + +G++ + + G + N L ++G Sbjct: 253 AI--NKEADLKANDLNIHSRGANFNITYRGQTAHINLNIPGKYNVMNALGSIGACLCEGI 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 ++ K L + GR + N G+ ++D Y P ++ ++L Sbjct: 311 SLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVD--YAHTPDGLE---NILKTAREFTT 365 Query: 369 GRRIAVLG 376 GR IAV G Sbjct: 366 GRLIAVFG 373 >gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 11379] gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] Length = 522 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 149/371 (40%), Gaps = 31/371 (8%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V GI+ DSR++ P + + A+ G G DF A GA V+ + + +P Sbjct: 32 GDVTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVAVLTDPTGAERAAATGLP 91 Query: 85 VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V ++ + +LA R + I ITG+ GKTTT ++ L + + IG+ Sbjct: 92 VLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAYLVEGGLRAAGRPTGLIGT 151 Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187 IG + P D M G + + V H +A Sbjct: 152 VEMRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVA 210 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-T 246 V ++P H+ SG+E+ AKA++F E++ +N+DD + L +S G+ T Sbjct: 211 VFNNLSPEHMEFHSGMEDYFQAKAQLFT-PERSHRGVVNFDDEYGRRLITES---GVPVT 266 Query: 247 IYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S +AD+ + + S + V +G+ + G N L IV++ Sbjct: 267 TFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAA--IVTL 324 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A V I A V G+ R Q + ++D ++ + A SVL + Sbjct: 325 AVAGVAPQIAADGVAAVPGVPGRLERVDAGQPYLAVVDYAHKTD-----AVESVLRSLRK 379 Query: 366 HGEGRRIAVLG 376 EG+ VLG Sbjct: 380 VTEGKVHIVLG 390 >gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 487 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 83/372 (22%), Positives = 156/372 (41%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G + DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ A+A R ++ ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLS--AIAGRFYGDSSRSLILVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG---ARAVAMEVSSHGLDQGRAAALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F L+ + +N DD F L A + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCRV-INLDDDFGRELAAVKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +KAL GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 499 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 31/314 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPV 85 V GI+ID R I + F A+ G H DG DF AV++GA V+ VA + L +P Sbjct: 51 VTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTAGQPVAVGVPQLVVPR 110 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +G VA R+ S ++I +TG+ GKTTT +++ L + + +G Sbjct: 111 ASLRTAVG-----RVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLGEGVGVLG 165 Query: 142 SYNNHIGVPLT--LARMPVDV-DFGIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPA 195 + + + P LAR + D G + M + I + + V T ++ Sbjct: 166 TLWSRLTTPEAPELARRLAEFRDSGRRWVAM-EVSSIAIAMERIEGLHVRVGVFTNLSQD 224 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E+ +AKA +FE E+T +N DD + L A + S Sbjct: 225 HLDFHGSMEDYFAAKARLFE-PERTAIGVINVDDPWGARLAASVRVPVVPVSISAVTDIE 283 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 D ++++ W +L +G H +N+L+ + ++ + D D Sbjct: 284 IDAAGIRFRRNGR--WYRSRL-----------VGEHNLRNILLAVSVLEQVGFDPDLLRG 330 Query: 316 ALSVFHPKEGRGKR 329 L GR +R Sbjct: 331 VLGEVESPRGRMQR 344 >gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl] gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl] Length = 816 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPVFGVD 89 S DSR E F A++ DGHD+I A+ GA G++ A ++ + Sbjct: 28 SYDSRLTVAGECFIALRTTRADGHDYIPAALAAGARGILCTRPPHDAGTATVVV----CP 83 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + A R + T+IA+TG +GKT + + L++ T+ ++N+ +G+ Sbjct: 84 DPQALLLRWASNRLQRLQPTVIAVTGGIGKTLARRAIAAVLATHAPTFQSRRNFNSLLGL 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 P+ LAR+ D + + E HL L P +AV+T Sbjct: 144 PIALARLERDHQYAVLEFAGEHLPP---LAAAFPPRLAVVT 181 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++D+S+NA P +M+AA+ L+ I GRRIAVLG E+ + + + + + + Sbjct: 300 ILDDSFNATPEAMRAALQTLAAIP---TGRRIAVLGTPTELPAVDATPLLTELGMQAARS 356 Query: 401 ISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 ++ L G + A P ++ +H +T + + + S D DVV+V Sbjct: 357 AEYLVLKGMGAATMAQAARLANP-TVTIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGER 415 Query: 457 FYRLINLLL 465 +++ LL Sbjct: 416 LEQVVAPLL 424 >gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] Length = 486 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 90/386 (23%), Positives = 157/386 (40%), Gaps = 35/386 (9%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A+ G S + + ++ DSR P FFA++G DG FI A+ +GA V+V+ Sbjct: 8 ALCGTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIVDQ 67 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + ++PV D L +A A + I AITG+ GK++T + L Sbjct: 68 ETARP--DSAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWIL 125 Query: 133 IKKTYACIGSY----NNHIGVPLTLARM-PVDVDFGIFEL---GMSHLGEIRFLTHLVRP 184 A +G+ + + P +L PV + + L G+ H+ + +H + Sbjct: 126 QGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVA-LEASSHGLEQ 184 Query: 185 HIAVITTIAPAHLSNFS--------GIEEIASAKAEIFEGLEKTGTIF---LNYDDSFFE 233 H T+ A SN + +E +AK +F+ + TG I + D F Sbjct: 185 HRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFS 244 Query: 234 LLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GY 290 L+ A +L ++++ G + +L + + + + L G+ + + + G Sbjct: 245 ALQDIAARRSLKLRSVGRNGTT----LRLIEARPTPSGQILRLALHGEELPEISLSLPGR 300 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+++ + AD + L GR +R AL G +D Y P Sbjct: 301 FQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERA-VALPNGAAAYVD--YAHTP 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 ++ VLS + PH GR + V G Sbjct: 358 DALDC---VLSSLRPHTTGRLVVVFG 380 >gi|32265627|ref|NP_859659.1| hypothetical protein HH0128 [Helicobacter hepaticus ATCC 51449] gi|32261675|gb|AAP76725.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 493 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 61/324 (18%) Query: 95 LNKLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LN+ + A+ + S+ II +TGS GKT+ K L L + YA S N H G+ Sbjct: 149 LNRYIILAKEKLDIMSRLIIIGVTGSYGKTSMKNFLAQILKEKYRVYATPRSVNTHTGI- 207 Query: 151 LTLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +A + ++D+ I E G G+I ++ + PH AVI + HL F +E I Sbjct: 208 --VADINQNLDYITEIYIIEAGARLKGDIALISQFLNPHYAVIGEVGEQHLEYFKSLENI 265 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKW 263 K FELL++ +K + F KS + + + K Sbjct: 266 VETK---------------------FELLQSSR----LKKAFVFKDNPKSPHIEPNITKK 300 Query: 264 KQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDT 312 Q ++ ++ L G S E+ G +H +L +V++ A V+ Sbjct: 301 IQYFPENVRNIDANLDGTSFELFIKGEWHHFETMVLGVFNVVNLSAAIYMGVELGLQVEE 360 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 KA+ P R + + +Q +ID+ +N N MK AI + S +GR+I Sbjct: 361 IQKAVKRIEPIPHRLNKIQT--HQKL--IIDDGFNGNLKGMKEAIRLCSLY----QGRKI 412 Query: 373 AVLGDMCEMGELSQSFHIDLAEVL 396 V + E ++ +I+LA+ + Sbjct: 413 IVTPGIVES---TKEANIELAQAI 433 >gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] Length = 496 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 85/372 (22%), Positives = 153/372 (41%), Gaps = 42/372 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V + +S+ P + F A+ G H DGHDF+ A+ GA ++ + + PV Sbjct: 14 VVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERAL-----PTTRPV 68 Query: 86 FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V++ A ++ A+A + +I +TG+ GKTT + + SI +T Sbjct: 69 CIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRL----IQSIMETAGATVGM 124 Query: 144 NNHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLV---------RPHI----- 186 ++ +G R P D + + +S + E TH V R + Sbjct: 125 SSSLGYDNGYDRQPWDCTTPNAAVLADLLSRM-EYNGCTHAVVEASSEALSRDRLDGIEL 183 Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IT + HL + AK +I L +TG +N DDS L ++ + Sbjct: 184 DAVAITNLRQDHLDVHGSVTNYHRAKKKILGRLRETGFAVVNADDSACNKLLSQIETPAL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ G ++ + + K SEQ+++ + +++ V IG H N L+ + Sbjct: 244 -SVALHGAAEITASVVERHK--SEQTFL-LSAGDETVPVCTRMIGDHHVYNCLVAAAVGL 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + D+ T ++ L GR +R C G F + +++A ++KA L +++ Sbjct: 300 VYGVDLKTVVRGLERVDSIPGRMQRIECGQPFGVFVDLAHTHDALAMALKA----LRRVT 355 Query: 365 PHGEGRRIAVLG 376 GR I V G Sbjct: 356 ---HGRVICVYG 364 >gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] Length = 520 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84 +DSR I + F +K D + L +V+ A V+ D+V + + IP Sbjct: 46 LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105 Query: 85 VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V ++ L L +AARL+ + IIA+TG+ GKTT +++ + + A Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164 Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185 +G+ N +G + A DV + L S G ++ V Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241 A+ T ++ HL + + AKA++F+ + G + L+ + + F+ A Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYETADFQI 284 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G YS K NADF + + + +EVQ M + +G N+L ++ Sbjct: 285 IG----YSQQKP-NADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASMA 339 Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L AD+ I L + RG+ R + G F +ID Y P ++K Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388 Query: 358 SVLSQISPHGEGRRIAVLG 376 VLS + H GR IAV G Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407 >gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parasuis SH0165] gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis SH0165] Length = 496 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 49/407 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPL +F L + G + + +N +++DSR + + F A+KG DG FI A Sbjct: 1 MNPLLSFFPEL-----NHWGELKE--LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53 Query: 61 VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATII 111 +++GA LV+ D + + V V ++ L+ +A A K T++ Sbjct: 54 IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF 165 ITG+ GKTTT ++ + + A +G+ N + V T + + + + F Sbjct: 114 GITGTNGKTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANF 173 Query: 166 -ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 ELG +S G ++ + +A+ T ++ HL + +EE A AK +F L Sbjct: 174 VELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGEL 233 Query: 218 EKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQ 269 + +N DD AK A+ + T F K+K F L+ E Sbjct: 234 SSKQQV-INADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFES 292 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 SW +L+ + IG N+L + L D+ ++ + + GR + Sbjct: 293 SWGNGELKSRL-------IGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMEC 345 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 N ++ Y P +++ A L H EG V G Sbjct: 346 LISEENAEESPMVIVDYAHTPDALEKA---LDAARLHCEGELWCVFG 389 >gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] Length = 482 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 104/452 (23%), Positives = 180/452 (39%), Gaps = 60/452 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T +L + P V G++ DSR + P + A++G DGH FI A Sbjct: 1 MTPVTTVAELFALYRAPG----PPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVG 118 VQ+GA +V + + L +P D AL++LA A ++ +I +TG+ G Sbjct: 57 VQRGAVAIVGEEPLEPGVPYLRVP-----DARRALSRLAAAFYGFPSTRLFVIGVTGTDG 111 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFEL---G 168 KTTT ++ L+ + I + G T P +V + E+ G Sbjct: 112 KTTTSCLVHHLLTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAP-EVQAALAEMVRRG 170 Query: 169 MSHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 ++H + +H + H +AV T ++P HL +E AKA + + + Sbjct: 171 LTH-AVLETSSHALAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAAL---VNRA 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G LN + L + H ++G A ++ + ++ ++ ++ G + Sbjct: 227 GFSILNAGCPYAMRLTHRPHT-------TYGVQAGA-YRAVRVRESTDGLRFTLEAPGFT 278 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 E IG + +N L L ++ A+ AL+ F G R + Sbjct: 279 GEAFLPMIGRYNVENALAALAAAHRAGVPLEEALPALARF---SGVPGRMQILQAHPIRA 335 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++D + P ++ A++ L +P GR I V+G E D A+ L Sbjct: 336 VVD--FAHTPKALAKALTALRPTTP---GRLIVVIGAAGER---------DPAKRAPLGR 381 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 + V L+ F V +DA +H E G Sbjct: 382 TA-VTLADFAVFTEEDARSEDVHAILQEMERG 412 >gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] Length = 483 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 159/395 (40%), Gaps = 45/395 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + L +DL A+ G I G+S DSR+I AFFAI G DG ++ A Sbjct: 3 LTELLARNDLDPALAGIEIA--------GLSADSRAIREGFAFFAIPGHAGDGLSYVDDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +VV S+P+ VDDV L A R I A+TG+ GKT Sbjct: 55 RARGARVVVAQRQ-----SECSLPLVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKT 109 Query: 121 TTKEMLTIALSSIKKTYACIG------SYNNHIGV-----PLTLARMPVDV-DFGIFELG 168 + L +++ A +G S H G P+ L R+ D+ G+ L Sbjct: 110 SVVASLRQIWTAMGHEAASLGTVGVVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLA 169 Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFL 225 M S LG + VR +A T + HL + +EE +AK +F+ L + G T + Sbjct: 170 MEASSLGIDQRRLDGVRLSVAGFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVI 229 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + D + A G+ ++ G +K +R+ + + + ++++ G V Sbjct: 230 DADSDVAPRVAAVCEKRGL-NVFGVG-AKGEAIAVREARAHALATSLKLRHAGVDYSVEL 287 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTL 341 G N L+ G+ D AL+ GR G+R G Sbjct: 288 PLAGAFQTSNALVAAGLAIAAGDDPARVFSALNELKGAPGRLEFIGER------DGAPVF 341 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y P +++ VL+ + P + R I V G Sbjct: 342 VD--YAHKPDALE---KVLATLRPLTKRRLIVVFG 371 >gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] Length = 494 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 159/395 (40%), Gaps = 45/395 (11%) Query: 8 HDLLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ LQ+I G +G + G +DSR + P + + I G H DGHDF AV+ Sbjct: 7 NNTLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKA 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GA + V + L +P V ++ K+A A K +I +TG+ GKTT Sbjct: 67 GAAALAVERYL-----PLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLELIGVTGTNGKTT 121 Query: 122 TKEML-TIALSSIKKT--YACIGSYNNHIGVP-------------LTLARMPVDVDFGIF 165 ++ +IA + KKT +GS + G+P L + V+ + Sbjct: 122 VTHLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVM 181 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTG-T 222 E+ L R + R A+ T + HL +EE +AK +F + EK G Sbjct: 182 EVSSHALDLGRIVG--CRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQK 239 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD E L K+ + ++G K AD+Q K + + ++ + + Sbjct: 240 AILNADDQASEYLMTKTSC----RVVTYGIEKKADYQAEKIVLSDKGIYFDLVYKKIREK 295 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G N+L + + KAL GR + R Q F +I Sbjct: 296 VFFATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKG--QPFLVII 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRR-IAVLG 376 D Y P ++ +S +I+ GRR I V G Sbjct: 354 D--YAHTPDGLENVLSTAREIT----GRRLITVFG 382 >gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 449 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 55/397 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N + +A L+IPV+ LG RL SK IA+ G+ GKTTT M+ +AL Sbjct: 75 NHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAMIGLAL 125 Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 S I T +GS IG + G F L S FL + P + Sbjct: 126 LQSGIDPTI-VVGSDVPSIGGNAYSGQ-------GDFFLAESCEYRRHFLNY--SPEYLI 175 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I H F ++++ A +EI + + G IF+ ++D + ++A+S I Sbjct: 176 ITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS------PII 229 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307 +FG ++ AD + E S M + G + H H G H N L ++ + + Sbjct: 230 TFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIG 289 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358 + +++LS F+ G +R+ + Q LI + Y +P +++ + Sbjct: 290 VPTEKVLESLSHFN---GTKRRFE-HIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDR 345 Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA 413 + + PH R +L E SQSF + +AE+ + + L+ + Sbjct: 346 RIRAVFQPHTFSRTEKLL------QEFSQSFQAADEVVIAEIFA--SARETNLNTISASS 397 Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L D + + ++ Y +++ + ++ +L GD+V+ Sbjct: 398 LADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLT 434 >gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51] gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense DCB-2] gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 435 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 55/397 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N + +A L+IPV+ LG RL SK IA+ G+ GKTTT M+ +AL Sbjct: 61 NHEEIARARELNIPVYSYPQFLG---------RLMSKKRGIAVAGTHGKTTTTAMIGLAL 111 Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 S I T +GS IG + G F L S FL + P + Sbjct: 112 LQSGIDPTI-VVGSDVPSIGGNAYSGQ-------GDFFLAESCEYRRHFLNY--SPEYLI 161 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I H F ++++ A +EI + + G IF+ ++D + ++A+S I Sbjct: 162 ITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS------PII 215 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307 +FG ++ AD + E S M + G + H H G H N L ++ + + Sbjct: 216 TFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIG 275 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358 + +++LS F+ G +R+ + Q LI + Y +P +++ + Sbjct: 276 VPTEKVLESLSHFN---GTKRRFE-HIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDR 331 Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA 413 + + PH R +L E SQSF + +AE+ + + L+ + Sbjct: 332 RIRAVFQPHTFSRTEKLL------QEFSQSFQAADEVVIAEIFA--SARETNLNTISASS 383 Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L D + + ++ Y +++ + ++ +L GD+V+ Sbjct: 384 LADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLT 420 >gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 103P14B1] gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 46P47B1] gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC1] gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC7] gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis O35E] gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 101P30B1] Length = 520 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84 +DSR I + F +K D + L +V+ A V+ D+V + + IP Sbjct: 46 LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105 Query: 85 VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V ++ L L +AARL+ + IIA+TG+ GKTT +++ + + A Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164 Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185 +G+ N +G + A DV + L S G ++ V Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241 A+ T ++ HL + + AKA++F+ + G + L+ + + F+ A Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFQI 284 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G YS K NADF + + + +EVQ M + +G N+L ++ Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339 Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L AD+ I L + RG+ R + G F +ID Y P ++K Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388 Query: 358 SVLSQISPHGEGRRIAVLG 376 VLS + H GR IAV G Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407 >gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] Length = 507 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 158/380 (41%), Gaps = 52/380 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P + F AI G DG FI AV +GA VV + +S +P F Sbjct: 24 VTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPVPSS----QVPFF 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL +A R + T++ ITG+ GKTTT +L ++ + IG+ Sbjct: 80 KVSSARKALALIAANFYGRPADQLTLLGITGTNGKTTTSYLLEAMSTAAYASTGVIGTLG 139 Query: 145 -----------NHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N PL L R+ V+ I E+ L + R H + A Sbjct: 140 YKFAGRTVECANTTPDPLELHRILREMVEAGVETVIMEVSSHALAQERV--HGLTFKAAG 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + ++ HL +E+ +K ++F E L TG +N DD++ + + + Sbjct: 198 FSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVNGDDTYASRIYNEQRGQ-KRMA 256 Query: 248 YSFGKSKNAD-------FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + F + + + F L+ K + ++ L+ K + G H +N+L+ + Sbjct: 257 WKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLL-------GPHNLENILLAV 309 Query: 301 GI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAA 356 GI DV I+ + P GR +R G L+D ++ + ++K + Sbjct: 310 GIGLGAGFARRDVQEGIERM---MPVAGRMERVENYGPSGAPAVLVDYAHTDD--ALKRS 364 Query: 357 ISVLSQISPHGEGRRIAVLG 376 I ++ +GR IAV G Sbjct: 365 IEAARSLA---KGRVIAVFG 381 >gi|153846986|ref|ZP_01993905.1| glutamate-1-semialdehyde 2,1-aminomutase [Vibrio parahaemolyticus AQ3810] gi|149744849|gb|EDM56229.1| glutamate-1-semialdehyde 2,1-aminomutase [Vibrio parahaemolyticus AQ3810] Length = 230 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 43/67 (64%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + ELG +H+GEI + T LV+P IA++ +A AHL F IE + AK EI++GL+ G Sbjct: 1 VIELGANHIGEIAYTTQLVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIA 60 Query: 224 FLNYDDS 230 +N D + Sbjct: 61 IVNLDSN 67 >gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC8] Length = 520 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84 +DSR I + F +K D + L +V+ A V+ D+V + + IP Sbjct: 46 LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105 Query: 85 VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V ++ L L +AARL+ + IIA+TG+ GKTT +++ + + A Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164 Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185 +G+ N +G + A DV + L S G ++ V Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241 A+ T ++ HL + + AKA++F+ + G + L+ + + F+ A Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFQI 284 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G YS K NADF + + + +EVQ M + +G N+L ++ Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339 Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L AD+ I L + RG+ R + G F +ID Y P ++K Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388 Query: 358 SVLSQISPHGEGRRIAVLG 376 VLS + H GR IAV G Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407 >gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] Length = 484 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 157/386 (40%), Gaps = 42/386 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +LL++I+ S+ I+ V+ G++IDSR I+ AF A+KG DGH FI A++ Sbjct: 1 MNLQELLKSIK--SLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIE 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKT 120 GA ++ DM + + V A+ KLA A K ++ +TG+ GKT Sbjct: 59 LGAKAILCE-DMPED-RTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLVGVTGTNGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-------------GVPLT--LARMPVDVDFG-- 163 T +L + + + N+I + L LA+M VD G Sbjct: 117 TIATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKM---VDAGCE 173 Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 +F SH R + L A+ T + HL E +AK F+ L K+ Sbjct: 174 YVFMECSSHAIAQRRIGGLTFTG-ALFTNLTRDHLDYHGTFENYRNAKKMFFDDLPKSAF 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N DD + + A TI ++ + ADF+ R E + + L + Sbjct: 233 AITNADDKNGMFMVQNTKA----TIKTYSMERMADFRAR----IIEMHFAGMYLNVDGND 284 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V IG N+L G +L + + LS H GR + + + +G ++ Sbjct: 285 VGVQFIGKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSS--EGVTAIV 342 Query: 343 DESYNANPASMKAAISVLSQISPHGE 368 D Y P ++ ++ + ++ G+ Sbjct: 343 D--YAHTPDALANVLNAIREVDKTGQ 366 >gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] Length = 487 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 149/374 (39%), Gaps = 34/374 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 FV G++ DSR + F A+ G DG DFI A+ KGA V+ D A++ S + Sbjct: 19 FVTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAAAVLAPDD-TAALESPDSLL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V DV A LA A S+ I +A+TG+ GKT+ S++ K A +G+ Sbjct: 78 VKVSDVRRAY-ALAAKAFYGSQPKICVAVTGTNGKTSVATFCRQIFSTLGKKSASMGTLG 136 Query: 144 --NNHIGVPLTLARMP-------VDVDFGIFEL---GMSHLG--------EIRFLTHLVR 183 + I T P D+ + EL G++HL + R L V Sbjct: 137 VVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLALEASSHGIDQRRLDG-VS 195 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHAL 242 A T + HL + +E AK +FE L G T LN D + A L Sbjct: 196 LTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVLNADSDAYNSFAAMC-VL 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ S G+ + + + + ++ QG+ E G A N L+ G+ Sbjct: 255 SGTSVMSVGE-RGRGLAMVGRDLTVDGQILFIEHQGRKYETKLPLAGLFQASNALVAAGL 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D I ALS+ GR +R N + Y P ++ +VL Sbjct: 314 CIAAGEDPGAVIHALSLLKGARGRLERVGAKRNAAEVYV---DYAHTPDGLE---TVLKA 367 Query: 363 ISPHGEGRRIAVLG 376 + PH +G+ + V G Sbjct: 368 LRPHTQGKLVVVFG 381 >gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] Length = 523 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 40/367 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P ++ ++IDSR + P FFA+ G DG+ F+ A+ +GA V V + S Sbjct: 48 PDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVDEAISRGA--VAVISSQARRFRSAK 105 Query: 83 IPVFGVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + VD+ VL A+++ A +++ ITG+ GKTT ++ L+++ + Y C Sbjct: 106 VAYLTVDNPRLVLAAVSR-AFYDHPDKDLSLVGITGTNGKTTVAYLVKQILANLGQRYGC 164 Query: 140 IGSYNNHIGVPLTLARMPV------------------DVDFGIFELGMSHLGEIRFLTHL 181 +G+ +G L +P D + + +S G +F Sbjct: 165 LGT----VGYDLVRRTVPSFRTTPESHDLCGLLSQMRDFECRGAVMEVSSHGIDQFRVSG 220 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKA 237 + + + HL +E + K F G L K + N DD + + L Sbjct: 221 LGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGESGPLPKVAVV--NIDDPYGKRL-- 276 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S I +FG+++ A F+ + + SE S V +G + N L Sbjct: 277 VSEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTL 336 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I S L +++ I+ L F GR ++ Q L+D ++ + +++ A+ Sbjct: 337 AALTICSGLGLNIENCIEDLDSFPGIPGRMQKVEAG--QAATVLVDYAHTED--ALQNAL 392 Query: 358 SVLSQIS 364 S+L ++ Sbjct: 393 SMLQGVT 399 >gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2tet1] gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 483 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 156/395 (39%), Gaps = 53/395 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 6 LLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGA---- 61 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGSVGKTT 121 +A + SL P V ++ A + +A+ A L ++ +I ITG+ GKTT Sbjct: 62 -----IAVLSSLYNPFLSVVQII-AEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIF 165 ++ + IG+ + +G + A M ++ + Sbjct: 116 VSCLVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVM 175 Query: 166 E---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E +GM+ LG +R L V+T I HL +EE +AK + F L + G Sbjct: 176 EVSSIGMA-LGRVRETEFLA----GVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGI 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N D + S A + S+ + AD++ + K S S ++ QGK Sbjct: 231 AVVNLDCEYAPSFLNGSQARAV----SYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFP 286 Query: 283 VVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 IG H N+L +L +V L D ++ + +G R L F Sbjct: 287 CETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKG---RLDPILLGPFPVY 343 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ID Y P ++ +L Q+ P GR I V G Sbjct: 344 ID--YAHTPDALDNVCRILLQLLPK-YGRLIIVFG 375 >gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d] Length = 493 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +THL+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 493 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 30/252 (11%) Query: 10 LLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 LL+ + +++ G V + + +DSR I AF I G DGHD++ AV+ GA + Sbjct: 6 LLECLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAI 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEML 126 + ++ G +P+ V+D AL LAV +I +TG+ GKTT +L Sbjct: 66 FTSKPLMKEYG---VPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNGKTTVTYLL 122 Query: 127 ---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMS 170 TI + ++T+ + + N + + T M DV GI E+ Sbjct: 123 DKIFEYHQKKAGVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIF 224 L R + IAV T ++ HL I++ AK+ +F L EK Sbjct: 183 ALDMGR--VYGCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAI 240 Query: 225 LNYDDSFFELLK 236 +N DDS LLK Sbjct: 241 INDDDSSSHLLK 252 >gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] Length = 498 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 28/316 (8%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 D++ I+ +I G +P+ VN IS DSR + + F AIKG DGH++I +++GA L Sbjct: 5 DIIDNIKVKTIYGNLPES-VNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQGAAL 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + ++ + ++ V ++ + +A S +A+TG+ GKT+ ++ Sbjct: 64 VIASRYENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSISTLVH 123 Query: 128 IALSSIKKTYACIGS--YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L ++ ++ A IG+ + + P+ DV ++G I+ L H Sbjct: 124 NMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEASSH 183 Query: 186 -------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYD 228 +A+ T + HL ++ A K+ +F L + LN D Sbjct: 184 AMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVLNKD 243 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVV 284 DS+++++ S L + I ADF KQ E + S E Sbjct: 244 DSYYKVI---SKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGTFECT 300 Query: 285 HHGIGYHMAQNMLMTL 300 + IG M N+L L Sbjct: 301 TNYIGDFMVSNVLAAL 316 >gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M04-240196] Length = 492 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 141/357 (39%), Gaps = 31/357 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + +TG+ GKT+ + L A + + A +G+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVSILTADV 310 S++AD ++ + S+ +E + E H +G AQN+ + ++ + Sbjct: 266 SEHADIRITDFTASSDG--IEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPL 323 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + L P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 324 DKVLDVLEKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 494 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 106/269 (39%), Gaps = 32/269 (11%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+ I I + + I DSR + P F I+G DGH FI A++KGA + Sbjct: 5 DLLEEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIKKGAIAI 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 V DM G + V V+ L R +I +TG+ GKT+T M+ Sbjct: 65 VAQKDMTGLDGVTWVQVKDTRQVMAQLGS-TFYGRPSQHLELIGVTGTNGKTSTTYMIKK 123 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDF-GIFE------------------L 167 L + ++ IG+ N IG A+ P +D IF+ L Sbjct: 124 ILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKEMADEKVTECVMEVSSHAL 183 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + E F + V T + P HL I+ AK ++F T +N Sbjct: 184 ALERVAESEF-------KVGVFTNLTPEHLDFHENIDNYREAKKKLF--YLTTVANVINI 234 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNA 256 DD ++ + L ++ +FG K A Sbjct: 235 DDPHGAMIAEEVKKLK-PSLITFGIKKQA 262 >gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679] gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] Length = 492 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 85/362 (23%), Positives = 143/362 (39%), Gaps = 41/362 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDV 91 DSR I + F A + + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + A IG+ N Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINTDDGYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S++AD ++ + S+ W E + + + + G AQN+ + ++ Sbjct: 266 SEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLL-------GRFNAQNLAACIALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + L+ P G R C +N G L+ Y P +++ A+S L +I P Sbjct: 319 NGYPLDKVLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374 Query: 366 HG 367 G Sbjct: 375 QG 376 >gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae LPCoLN] Length = 483 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 103/455 (22%), Positives = 177/455 (38%), Gaps = 62/455 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL +Q G V V ++ DSR + + F A KG YDG+DF A+ GA Sbjct: 3 LKELLHGVQAKIYGKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLR------SKATIIAITGSVGK 119 +A SL P V ++ L +L + SK I +TG+ GK Sbjct: 62 --------IAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPL---------TLARMPVD-V 160 TT ++ L S +K +G+ + +G P T+ R D V Sbjct: 114 TTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAV 173 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + +G++ G + + AV+T I HL E +AKA++F + + Sbjct: 174 VMEVSSIGLAS-GRVAYTNF----DTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLVPPS 228 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G + +N D + + A + ++G AD++ + S + + + Sbjct: 229 GMVVINTDSPYASQCIESAKA----PVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284 Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + IG + N+L + V + L D++ ++ + + P G R L Sbjct: 285 IACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPG---RLDPVLMGPCP 341 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ID Y P ++ ++ L ++ P G GR I V G C G+ +S +A+V+ Y Sbjct: 342 VYID--YAHTPDALDNVLTGLHELLPEG-GRLIVVFG--CG-GDRDRSKRKLMAQVVERY 395 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 GF V+ + +E DG + Sbjct: 396 --------GFAVVTSDNPRSEPPEDIVNEICDGFY 422 >gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379] Length = 406 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 16/217 (7%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARMPV 158 + R K T IA+TGS GKT+T L LS + IG +N + L R+ Sbjct: 22 ICRRFYDKTTAIAVTGSCGKTSTTHFLGKILSD--RDSCRIGILFNCRKAIIKNLRRVNS 79 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 F + E+G+ G + L+RP I ++T++ H NF +E A K ++ E L Sbjct: 80 SHRFVLQEVGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTLEATAFEKGKLIEFLP 139 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LR-KWKQCSEQSWMEV 274 ++G LN DD + +S A + ++G + AD + +R W E+ + V Sbjct: 140 ESGVAVLNADDPHVLAMARRSKA----RVLTYGLWEEADVRGSDIRCAW---PERLSLAV 192 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 QG+S+ + G +A ++L + L A +D Sbjct: 193 TYQGESVRIETGLFGSLLASSILA--AVCGALAAGID 227 >gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis VMC66] gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis VMC66] Length = 459 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+V G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] Length = 490 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 152/378 (40%), Gaps = 48/378 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 ++GI DSR + F A++G DGH +I A++KGA +V V ++ + Sbjct: 23 ISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGAAAIVCEEIPVLPDENMQVSES 82 Query: 84 -PVF-GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 PVF V D AL K A ++ +TG+ GKTT +L + Sbjct: 83 KPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGKTTIATLLYEMFRKMGHKVGL 142 Query: 140 IGSYNNHIG-----------VPLTL----ARMPVD--VDFGIFELGMSHLGEIRFLTHLV 182 + + N+I P+TL ARM VD ++ E+ + + R + Sbjct: 143 LSTVCNYIDGEAIPTDHTTPDPVTLHNLMARM-VDAGCEYAFMEVSSHSIDQKRISG--L 199 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAK 238 + + T + HL +E AK + F+ L + N DD + AK Sbjct: 200 SFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPASAFALTNADDKSGLVMLQNTAAK 259 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++T+ ADF+ + + E + M V EV+ +G A N+L Sbjct: 260 KLTYSLRTL--------ADFKGKILESHFEGTEMLVN----GREVMTRFVGRFNAYNLLA 307 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G L D + + LS H GR + + L G+ ++D Y P ++ +S Sbjct: 308 VYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPL--GYTAIVD--YAHTPDALTNVLS 363 Query: 359 VLSQISPHGEGRRIAVLG 376 + ++ G GR I V+G Sbjct: 364 GIHEVL-DGNGRVITVVG 380 >gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK408] Length = 459 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+V G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] Length = 479 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 60/379 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR + P F IKG DGHDF A+ KG ++ D+ + L Sbjct: 21 ITDVSCDSRKLTPNSVFACIKGVQSDGHDFAQAALAKGVPCILCERDLGLNNQLL----- 75 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A K+ K ++ +TG+ GKTT ++ L+ + IG+ Sbjct: 76 -VQDTHFAFAKMCANFYGNPAKKLKLVGVTGTNGKTTVTSIIKRVLAGLGCKVGLIGTIQ 134 Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFL-THLVRPHIA 187 N IG +P T L+ M ++ I E+ L + R +H +A Sbjct: 135 NEIGDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIEVSSHALDQCRLADSHF---EVA 191 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL +E+ AKA++F +K G I + DDS+ L ++H ++T Sbjct: 192 AFTNLTQDHLDYHKDMEDYFQAKAKLFHMCDK-GVICI--DDSYGRRLALEAHC-SLRTF 247 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---------GYHMAQNMLM 298 + S + C ++ +E+ + G E+V + G +N L Sbjct: 248 SAEDASAS----------CFARN-IEMDITGVRFEMVTGAVISRMQFGTPGLFSVRNALC 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L +D+ + ++ +GR + + F L D Y P + ++ Sbjct: 297 AALVCLDLGISLDSVVGGINACGHIKGRSEII--PTGRDFTVLCD--YAHTPDGL---VN 349 Query: 359 VLSQISPH-GEGRRIAVLG 376 +LS I+ + G+GR +AV G Sbjct: 350 ILSSINEYKGKGRAVAVFG 368 >gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prosthecochloris vibrioformis DSM 265] gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 145/388 (37%), Gaps = 52/388 (13%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79 +G ++ IS DSR I F A++G DGHDF+ AV +GA V+ D+ + Sbjct: 26 RGSLSMISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICEEFPGGDVPPGVC 85 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + P + A A+ + +I ++G+ GKTTT ++ L+ Sbjct: 86 FIKAPDARLALAEAAFALYGGAS---EQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGY 142 Query: 140 IGSYNNHIG---VPLT------------LARMPVDVDFGIFELGMSHLGEIRFL--THLV 182 IG+ IG +PL L RM VD G + M L H V Sbjct: 143 IGTGRAVIGDEEIPLERTTPEAHGLHRLLRRM---VDEGCRAVAMEVSSHALMLQRVHGV 199 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 R +AV T + HL +E ASAK +F L G N DD +A A Sbjct: 200 RFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLPEGRAVFNMDDP-----RAPFMAE 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-------------- 288 G+ G S + + C E W ++ G+ + H + Sbjct: 255 GLPPASCSGCSLSGVERRADRSVCGE--WFLAEVTGEDAQSSHLRLSFPDGMFDGELLLP 312 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L+ + A + P +GR +R + ++D Y Sbjct: 313 GRFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGR-VRAIVD--YAH 369 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ + L+++ P G GR V G Sbjct: 370 TPDALQRVLQTLARLKPAG-GRLAVVFG 396 >gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] Length = 521 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%) Query: 17 HSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++G+ P+G V GI+ DSR++ P + + A+ G + G DF A GA + Sbjct: 22 EALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAVAAL 81 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEM 125 + + + +PV V D G + A+AAR+ I ITG+ GKTTT + Sbjct: 82 TDPAGAERVLAAGLPVLVVGDPRGRMG--ALAARIYGNPGDDLLQIGITGTSGKTTTAYL 139 Query: 126 LTIALSSIKKTYACIGSYNNHIGVP-LTLAR-MPVDVDF----------GIFELGM---S 170 + L + + IG+ IG L R P D G+ + M S Sbjct: 140 MEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 199 Query: 171 H---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 H LG + + H +AV ++P H+ SG+E+ AKA++F + G + N Sbjct: 200 HALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVV--N 253 Query: 227 YDDSFFELL 235 +DD + L Sbjct: 254 HDDEYGRRL 262 >gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea] gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] Length = 492 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 88/380 (23%), Positives = 162/380 (42%), Gaps = 48/380 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--------MVASIG 79 NG+S+DSR+I + F A+ G DG FI A ++GA +V+TD + + Sbjct: 20 NGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAVAALVHTDEPTEHGQVLSEASA 79 Query: 80 SLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 SL I F ++ L A+ A RL+ +I +TG+ GKT+ +++ ++ K Sbjct: 80 SLQILFFQLNQELSAIGAQAYPLAPQRLK----LIGVTGTNGKTSITQLMAQLVALQGKQ 135 Query: 137 YACIGSYNNHI-----------GVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLV 182 + +G+ N + P+T+A D D + + +S G I+ V Sbjct: 136 ASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADLCAMEVSSHGLIQNRVAAV 195 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKA 237 +AV T ++ HL ++ AK +F+ + +N DD E +A Sbjct: 196 PFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK-FSSLQSSLINLDDEVGRQWLSEEQEA 254 Query: 238 KSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K I + ++ S D L + W E G++ ++ +G N+ Sbjct: 255 KHLGFSICSAHADAASIYTQDNHLHHQGVMAMLVWPE----GRA-KLASPLLGSFNLSNL 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + LG + ++ D+ + ++ + P GR +R+ A G ++D Y +P +++ A Sbjct: 310 VAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTA--NGVTIVVD--YAHSPDAIEQA 365 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L H EG+ + G Sbjct: 366 LKAL---RGHCEGQLWCLFG 382 >gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM 16511] gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM 16511] Length = 472 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 87 GVDDVL-GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 G++ +L GA + A+ RL+S ++ +T S GKT+ K + L+ +TYA S Sbjct: 132 GIEKMLFGAFRRRAMK-RLKSLPDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSV 190 Query: 144 NNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 N GV + +P + + + E+G G+I +T V+PH AV+ I PAH+ F Sbjct: 191 NTLGGVMKDVNEELPEEAEVYVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIEYFKT 250 Query: 203 IEEIASAKAEIFE 215 +E I + K EI + Sbjct: 251 LERIRNTKMEILQ 263 >gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] Length = 509 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 151/364 (41%), Gaps = 40/364 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ +S +S +I F AIKG DGH +I +A GA + V V + IP Sbjct: 25 ISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKNHGAIVAV-----VEDFKEVYIPQI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143 VD+ +L LA +I IT + GKTTT ML LS K IG+ Y Sbjct: 80 KVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKTTTSFMLKKILSENKINTGIIGTVY 139 Query: 144 NN--HIGVPLTLARMPVDVDFG-----IFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + +P L P ++ + + +SH+ + + + I Sbjct: 140 TKFADVNIPSILT-TPESLELQKYFKEMLDKNISHVVMEVSSSAQQMLRVNNIDFDIVSF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ H+ E K++I +K LN D+ + LK K+ A + TI Sbjct: 199 GNLSREHIDQHGSFENYFRDKSKIILNAKKGSFALLNMDNEYIASLKEKTKA-SVLTISM 257 Query: 250 FGKSKNADFQLRKWKQCS---------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ ++DF + K + + E+ L+ +S EV +GY N ++ + Sbjct: 258 --ENLDSDFGISKLDLSTGFGKFMFHVNRDIKEINLKKQSFEVEMGSVGYASVMNGVIAI 315 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + IL D + + AL F +G +R+ ++ F L D + AN ++ ++ L Sbjct: 316 SLALILQVDKNIILNALENF---KGVERRFELIYDEKFKVLDD--HFANEKNIDVTMTTL 370 Query: 361 SQIS 364 SQ++ Sbjct: 371 SQMN 374 >gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 485 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 36/277 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR + FF I G DGHDF AV+KGA VV + +L +PV V Sbjct: 26 LEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAVAVVAERPL-----ALDVPVVIVR 80 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D A+ +LA + +I +TG+ GKT+ +L + IG+ I Sbjct: 81 DTKRAMARLASHFYGEPTKRLQLIGVTGTNGKTSVTHILDTMFREAGQKTGLIGTLYTKI 140 Query: 148 G---------VPLTL-------ARMPVDVDFGIFELGMS--HLGEIRFLTHLVRPHIAVI 189 G P +L + + V+ + E+ HLG +R + IAV Sbjct: 141 GDETIETRNTTPESLVLQQRFASMVNKQVETAVMEVSSHALHLGRVRGCDY----DIAVF 196 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHALGIKT 246 T + P H+ +E AK+ +F L T T +N DD + L + A Sbjct: 197 TNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAVINSDDPASDRLIQMTTA----D 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + ++G K AD K + + + + G+ +V Sbjct: 253 VVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDV 289 >gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium chlorochromatii CaD3] gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium chlorochromatii CaD3] Length = 516 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 156/381 (40%), Gaps = 46/381 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + +S DSR + F A++G DGH FI A+++GA ++V ++ SI G L + Sbjct: 43 ITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVCE-ELPQSITHGCLYLR 101 Query: 85 VFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V L + L A +LR I +TG+ GKTTT ++T L++ IG Sbjct: 102 VIDARKALAHVAALFYGNPAKQLR----FIGVTGTNGKTTTSRIITEMLTAFAVPSGYIG 157 Query: 142 SYNNHIG---VPLTL---------ARMPVDVDFGIFELGMSHLGEIRFLTHL--VRPHIA 187 + IG +PL A + V+ G + M L + +R A Sbjct: 158 TNLCRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGLRFDAA 217 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--------- 238 + T + HL ++ A AK +F+ L+ G +N DD++ L+ + Sbjct: 218 LFTNLTQDHLDFHHTMQAYAEAKQLLFDQLQPDGVAIVNTDDAYAPLMLQRVAPSQRVCC 277 Query: 239 ---SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294 ++ + +G+ DFQ + ME++ E++ G+ G + Sbjct: 278 TLQANVPSVLQCPQYGQ----DFQAEVRHASLAATEMELRFPKGETELLTVGLAGSYNVM 333 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L L +AL+ H +GR +R N + +D Y P +++ Sbjct: 334 NVLQAAATGYCLGLQPAAICRALAAVHSVDGRMERVG-RPNLPYQIFVD--YAHTPDALQ 390 Query: 355 AAISVLSQISPHGEGRRIAVL 375 A+ L + GE R+ VL Sbjct: 391 KALETLKALK--GEEARLMVL 409 >gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus sanguinis SK36] gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative [Streptococcus sanguinis SK36] Length = 450 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 162 DMLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 218 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+V G+ G H +N L T+ + + D T + LS F Sbjct: 263 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307 >gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 486 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 42/377 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+ IDSR + +F ++G +DGH+FI + KGA +V++ V + Sbjct: 11 PDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAK-CIVHSKPVEHMKK-G 68 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML-------------- 126 I V++V LN++A + +TG+ GK+T ++ Sbjct: 69 IAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIKDVYSHFAPCGYIG 128 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 TI++S + T + + I + T+ M VD L +S G V + Sbjct: 129 TISISYGEVTLPPSLTTPDAILIHKTMKDM-VDAGMQAVALEVSSHGLELGRVQSVDFDV 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV + + HL IE AK ++F L+K G LN DD++ + L + A Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKDGVAVLNADDAYVDQLADATDA----R 243 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++G +A +Q + ++ G +VH G Y + N++ I ++L Sbjct: 244 VVTYGIDHHASYQAENIR---------IEKTGSRFTLVHDGEHYEVVTNLVALYNIYNLL 294 Query: 307 TADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 A A + + ++ G+ R Q F ++D + P M+ Sbjct: 295 GAVAAMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQLFNVIVD--FAHTPDGMEKVFEY 352 Query: 360 LSQISPHGEGRRIAVLG 376 I+ G IAV G Sbjct: 353 AKDITEEGHS-IIAVFG 368 >gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 7169] gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 12P80B1] Length = 520 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 51/379 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGH------DFILHAVQKGAGLVVVNTDMVA-SIGSLSIP 84 +DSR I + F +K D + L +V+ A V+ D+V + + IP Sbjct: 46 LDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDSAAFVISEFDLVGLDLDGIQIP 105 Query: 85 VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V ++ L L +AARL+ + IIA+TG+ GKTT +++ + + A Sbjct: 106 IVSVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164 Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185 +G+ N +G + A DV + L S G ++ V Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241 A+ T ++ HL + + AKA++F+ + G + L+ + + F+ A Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYETADFQI 284 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G YS K NADF + + + +EVQ M + +G N+L ++ Sbjct: 285 IG----YSQQKP-NADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASMA 339 Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L AD+ I L + RG+ R + G F +ID Y P ++K Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388 Query: 358 SVLSQISPHGEGRRIAVLG 376 VLS + H GR IAV G Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407 >gi|163790758|ref|ZP_02185184.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7] gi|159873938|gb|EDP68016.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7] Length = 442 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 122/296 (41%), Gaps = 48/296 (16%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A+TGS GKT+T +L LSS+K T IG H GVP D DF I E Sbjct: 107 VAVTGSHGKTSTTGLLAHVLSSLKDTSYLIGDGTGH-GVP--------DADFFILE---- 153 Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R FL + RP A++T I H +S I+++ +A + ++K I D Sbjct: 154 -ACEYRRHFLAY--RPDYAIMTNIDFDHPDYYSSIDDVFNAFQSMAVQVKK--AIVACGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-- 286 D + ++A L Y FG DFQ + + + S +V ++ E H Sbjct: 209 DEQLQKIQANVPIL----YYGFGDHN--DFQAKNMTRSTTGSTFDVYVRD---EFYGHFD 259 Query: 287 --GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G H N L + I D + ++ L F +G + R Q +I + Sbjct: 260 IPTFGKHNILNALSVIAICQYENIDKEGVMENLKTF-----KGVKRRFTEKQILDMVIID 314 Query: 345 SYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHI 390 Y +P+ ++A I Q PH R +A+L D E L+ S ++ Sbjct: 315 DYAHHPSEIRATIDAARQKYPDKEIIAIFQPHTFTRTVALLSDFAESLNLADSIYL 370 >gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] Length = 487 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 145/372 (38%), Gaps = 36/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F A+ G DG +FI A+ +GA V+ D +A+ + + Sbjct: 20 VTGVTADSRKVGPGTLFCALPGTARDGREFIPQALSQGAAAVLAPEDTLATASN----IL 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 DV A A A T +AITG+ GKT+ + + A +G+ Sbjct: 76 TTYDVRRAYALAAKAFYGAQPKTCVAITGTNGKTSVATFCRQMFAHMGYHSASVGTLGIV 135 Query: 145 ------NHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPH-------- 185 H P L P D + G++HL + +H + Sbjct: 136 TQNGAAEHAITPPGLT-TPDAADIAEHLASLARDGVTHLA-LEASSHGIDQRRLDGVTLT 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGI 244 A T + HL + +E +AK +FE L G + LN D + A + G Sbjct: 194 AAGFTNLTQDHLDYHATMEAYRAAKLRLFEQLLPRGRVAVLNADSDAYNAFAASAITAG- 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ S G+ + L + + ++ QG+ EV G A N L+ G+ Sbjct: 253 ASLLSVGE-RGQHLTLTHRDLTVDGQILYLEHQGRKFEVKLKLAGLFQASNALVAAGLCL 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ++AL+ GR +R N G +D Y P ++ +VL + Sbjct: 312 AAGQKAEPVLEALTHLTGARGRLERVGSTGN-GAEIYVD--YAHTPDGLE---TVLKALR 365 Query: 365 PHGEGRRIAVLG 376 PH +GR + V G Sbjct: 366 PHTQGRLVCVFG 377 >gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 488 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 41/373 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ + +DSR FF +KG DGH F AV+ GA VV + D+ G + I Sbjct: 15 IDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDVIEGIVYIR-- 72 Query: 87 GVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIA--LSSIKKTYACIG 141 VDDV+ L+++ S +T + ITG+ GK+TT MLT+ L IG Sbjct: 73 -VDDVMTELHRVT-DVFYNSPSTNMYVYGITGTNGKSTT--MLTVRNILRRFGVNAGYIG 128 Query: 142 S----YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF----------LTHLVRPHIA 187 + YN H P V++ + ++ + + E+ + A Sbjct: 129 TISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVESIDFDNA 188 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL +E AK +F+ L+ +G + LN D+ + E+L+ + ++ + Sbjct: 189 SFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPSGFMVLNIDNEYGEILQNQDYS----NV 244 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G N R + + E L +GK+ VV + + NML + I+ Sbjct: 245 VTYG-VDNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVIAILHQ 303 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQI 363 ++ I L +GR + +N+G F ++D + P SMK + Sbjct: 304 RGYALEKIIPELKDIEHVDGR----QTMVNKGQPFRVIVD--FGHAPDSMKNVYEFVRST 357 Query: 364 SPHGEGRRIAVLG 376 G R I V G Sbjct: 358 QDEG-ARLITVFG 369 >gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] Length = 500 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 42/312 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----------MV 75 +N +++DSR + + F A+KG DG FI A+++GA LV+ D Sbjct: 20 LNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFA 79 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + + + V V ++ L+ +A A K T++ ITG+ GKTTT ++ + + Sbjct: 80 KNHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLL 139 Query: 134 KKTYACIGSYNNHI-----------GVPLTLAR-----MPVDVDFGIFELGMSHLGEIRF 177 A +G+ N + G + + R + + DF E+ L + R Sbjct: 140 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYR- 198 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLK 236 + +A+ T ++ HL + +EE A AK +F L + +N DD E L Sbjct: 199 -AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQV-INADDEIGREWLA 256 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ + T F Q +W + ++ LQG ++EV + + Sbjct: 257 KLPEAVAVSTDSQFQP------QQARWVKAKA---VQFTLQGATIEVESSWGNGELKSRL 307 Query: 297 LMTLGIVSILTA 308 + + ++LTA Sbjct: 308 IGAFNVSNLLTA 319 >gi|257865983|ref|ZP_05645636.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC30] gi|257872316|ref|ZP_05651969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC10] gi|257875610|ref|ZP_05655263.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC20] gi|257799917|gb|EEV28969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC30] gi|257806480|gb|EEV35302.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC10] gi|257809776|gb|EEV38596.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus EC20] Length = 444 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 44/301 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS I+ T IG H G P D +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGH-GEP--------DAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H F IE++ SA + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIEDVFSAFQSMASQVKK--GIFAF 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + L+A IY +G + N D Q + ++ ++ S +V + G+++ V Sbjct: 208 GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFVL 261 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + + D+ + F G +R+ + T++D+ Sbjct: 262 PAFGQHNINNALSVIAVAYKEGLDMKEVAAEMISF---PGVKRRFSEKIVAD-MTIVDD- 316 Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +PA +KA I +++ PH R IA++ + E +L+ H+ L ++ Sbjct: 317 YAHHPAEIKATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCDI 374 Query: 396 L 396 Sbjct: 375 F 375 >gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola] Length = 292 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 23/234 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I PQ + +S+DSR + ++ F AIKG DG+DFI AV+K ++ T Sbjct: 14 IKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKKH 73 Query: 79 GSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSS 132 G + +IP+ + ++ LA T II +TG+ GKTT +++ Sbjct: 74 GEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSEL 133 Query: 133 IKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185 + K A +G+ N + + T +D F L ++ +I +T V H Sbjct: 134 LGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSF-LHIAAKKKINLVTMEVSSHGLVQN 192 Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 I + T + HL +++ SAK F K I LN +D + Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKY 245 >gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 484 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 27/297 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI DSR+ F AIKG DG D+I A+++GA V+V+ ++ SI I + Sbjct: 23 IRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERGAVAVLVDGEI--SIDK-DITLI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + +L K+A + +I +TG+ GKT+ M+ L S IG+ Sbjct: 80 KVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSVTYMIKSILESQNNKVGLIGTIQ 139 Query: 145 NHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 N IG V T P +D + M G ++++ V H IAV Sbjct: 140 NMIGDKVYPTERTTPESLDLQRYLRLMVDEG-VKYVVMEVSSHSLALNRVDECDFDIAVF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +++ A+AKA++F + KT + +N DD + L+ S+A + + Sbjct: 199 TNLTQDHLDFHKTMDDYANAKAKLFR-MAKTACV-INIDDDYSSLIIENSNA----KVVT 252 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G A + K + + VQ++ ++ G N L + + IL Sbjct: 253 YGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIPGLFSVYNSLAAISVAFIL 309 >gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] Length = 490 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 150/377 (39%), Gaps = 46/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 ++GI DSR + F A++G DGHD+I A+ KGA +V S + + Sbjct: 23 ISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGAAAIVCEEIPALSDEDIQVSES 82 Query: 84 -PVF-GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 PVF V D AL K A ++ +TG+ GKTT +L + Sbjct: 83 KPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGKTTIATLLYEMFRKMGHKVGL 142 Query: 140 IGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + N+I P+TL ARM ++ E+ + + R + Sbjct: 143 LSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCEYAFMEVSSHSIDQKRISG--LS 200 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKS 239 + + T + HL +E AK + F+ L + N DD + A+ Sbjct: 201 FNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPTSAFALTNADDKAGLVMLQNTAARK 260 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++T+ ADF+ + + E + M V EV+ +G A N+L Sbjct: 261 LTYSLRTL--------ADFKGKILESHFEGTEMLVN----GREVMTRFVGRFNAYNLLAV 308 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G L D + + LS H GR + + +G+ ++D Y P ++ ++ Sbjct: 309 YGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSP--KGYTAIVD--YAHTPDALTNVLNS 364 Query: 360 LSQISPHGEGRRIAVLG 376 + ++ +G GR I V+G Sbjct: 365 IHEVL-NGNGRVITVVG 380 >gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268] gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268] Length = 466 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/407 (22%), Positives = 162/407 (39%), Gaps = 47/407 (11%) Query: 61 VQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 +Q G L V + + + IP+ D+LG + +++ AT I + Sbjct: 66 IQDGVELCVYTAAISEDNEEFQEVKRRGIPMMTRADLLGRI--------MQNYATAINVA 117 Query: 115 GSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 G+ GKTTT M+ I + + K +G IG L + G ++ ++ Sbjct: 118 GTHGKTTTTSMIGEILMEAAKDPTITVGGMMKDIGGNLRV---------GQSDIFLAEAC 168 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E H P IAVI + HL F I EI + E L + G + +N D +E Sbjct: 169 EYTNSFHSFFPSIAVILNVEADHLDFFKDINEIRDSFKTFIERLPEDGLVVINKDIPHYE 228 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 LG + I +FG +AD+ + + S+ + +V G H Sbjct: 229 YFLED---LGGRKIITFGHG-DADYTANFISYDHYARPSFTLFEHGEDRGKVTLSVTGEH 284 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L + +AL F G +R++ FT+ID+ Y +P Sbjct: 285 NIYNSLSAIAVARYLGISFEDIKEALHRF---SGTDRRFQRKGKINGFTIIDD-YAHHPQ 340 Query: 352 SMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + A I+ + PH R A++ D G L+Q+ I LA++ + + Sbjct: 341 EIAATIAAAQKYPHRKLWIVFQPHTYSRTKALMEDFA--GALAQADEIILADIYAAREKN 398 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V +S + L L ++ +V+Y + +I + +GD+++ Sbjct: 399 TVGISSDDLRKL--MLSQNTNVYYIPDFPSIEKYILEHVKEGDLLIT 443 >gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 497 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 23/234 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I PQ + +S+DSR + ++ F AIKG DG+DFI AV+K ++ T Sbjct: 14 IKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKKH 73 Query: 79 GSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSS 132 G + +IP+ + ++ LA T II +TG+ GKTT +++ Sbjct: 74 GEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSEL 133 Query: 133 IKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185 + K A +G+ N + + T +D F L ++ +I +T V H Sbjct: 134 LGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSF-LHIAAKKKINLVTMEVSSHGLVQN 192 Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 I + T + HL +++ SAK F K I LN +D + Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ-HKIKKIILNANDKY 245 >gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] Length = 477 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 162/389 (41%), Gaps = 39/389 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +F D++ I + ++ DSR + F AIKG DGHD+I A++K Sbjct: 1 MISFEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G+ L++ D+ G I V L ++ L + K ++A+TGS GKTTT Sbjct: 61 GSSLIIHTADIKREEGISYIKVTDPRKTLAQISNL-IYDFPSKKMDLVAVTGSNGKTTTS 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVD---------VDFGIFELGM-- 169 +++ + I A IG+ N +G +P + + +D I L + Sbjct: 120 RLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLALEA 179 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + L L + + T ++ HL ++ AK +FE + T N D Sbjct: 180 SSHGLDQKRLYGLDISY-GIFTNLSEEHLDYHKTMDNYFKAKMILFENAK---TTIANID 235 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + K+ L T+ KNAD++ ++ E + +++G E V I Sbjct: 236 DPYGK----KAKELFSNTVTFAIDEKNADYRAEDIRK--EDGKISFKIKG--CEFVIRKI 287 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYN 347 + N L ++ + A ++ A F +G R+ N G ++D + Sbjct: 288 ANYEIYNTLAACACLNQMGASMEEIAAAYKKF---KGVKSRFEYIENDLGINIILD--FA 342 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P + +A L + P G ++IAV G Sbjct: 343 HTPRAYEA----LFESVPEG-AKKIAVFG 366 >gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori Gambia94/24] Length = 493 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +THL+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] Length = 487 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 35/369 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S DSR +AP AF A+ G DG FI AV +GA +V+ + P+ Sbjct: 27 ITGLSADSRKVAPGMAFVAVAGTKADGASFIADAVSRGASVVIAGNGAAVT----GAPLL 82 Query: 87 GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTT----TKEMLTIA--LSSIKKTY 137 VD+ LAVAA + T++A+TG+ GKT+ T+++ A +++ T Sbjct: 83 TVDE---PRRFLAVAASRFYGKQPETMVAVTGTAGKTSVASFTRQIWAYAGHPAAMIGTT 139 Query: 138 ACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189 + N G P++L ++ + D G+ M S G +F VR A Sbjct: 140 GVVSPTRNDYGSLTTPDPVSLHQLLAALADEGVTHAAMEASSHGLDQFRLDGVRLAAAAF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIY 248 T + H+ +E+ +AK +F L G+ + + DD + E A + G + I Sbjct: 200 TNLGRDHMDYHPTVEDYMAAKMRLFRDLLPKGSPAVIFADDPWSEQAIAAARDTG-QDIR 258 Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G + DF L++ + + EV + E+ G N L+ G+ Sbjct: 259 TVG--RKGDFLALKRVEHFRHKQIAEVHIGDDIFEIHIPLAGDFQVANALVAAGLAISTG 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A+ AL GR + G +D Y P +++ +VL+ + P Sbjct: 317 VAAPVAMAALEKLVGAAGR-LELVGHTHDGALAYVD--YAHKPDALE---NVLTSVRPFT 370 Query: 368 EGRRIAVLG 376 GR I V G Sbjct: 371 TGRIIVVFG 379 >gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] Length = 483 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 144/373 (38%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++IDSR I F AI+G DGH FI A++ GA V+ + + S + Sbjct: 23 ITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELGADAVLC--EELPEKLSDHVTYV 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ A+ K+A K ++ +TG+ GKTT +L + + Sbjct: 81 QVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVC 140 Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183 N+I VP LA+M ++ E +G ++F L Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGL-- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL E +AK F+GL K N DD ++ + A Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDKNGMIMVQNTKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ ++ ADF+ R + E ++E+ EV IG N+L G Sbjct: 252 --TVKTYSIRSMADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + LS H GR + +GF ++D Y P ++ ++ + ++ Sbjct: 306 IMLGKKPEDILLVLSTLHSVSGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 G+G I V G Sbjct: 362 LD-GKGHVITVCG 373 >gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase [Alistipes shahii WAL 8301] Length = 484 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 89/395 (22%), Positives = 160/395 (40%), Gaps = 30/395 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ DSR++ P + FFA+ G DGHD+I AV+KGA +V + ++ + Sbjct: 24 IGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEKGAAAIVCERMPADAAEGVAYVLV 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 G A A + ++ ITG+ GKTTT +L + ++ I + Sbjct: 84 GDSAGAMADMAAAFYDYPSRELKLVGITGTNGKTTTATLLYDLVRAMGYKAGLISTVVYK 143 Query: 147 IG---VPLT-----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 I V T + R D + S ++ T + + + I Sbjct: 144 IDGREVEATHTTPDSIRLNAMMREMADAGCAYCFMECSSHAIVQERTRGLDFAGGIFSNI 203 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL E AK F+GL K N DD ++ + A + ++ Sbjct: 204 THDHLDYHKTFAEYIRAKKLFFDGLPKGAFALTNADDRNGRVMVQNTAA----AVSAYSL 259 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 ADF+ + + M +++ G+ + V +G A N+L G ++L + Sbjct: 260 RAMADFRCKIVEM--HLDGMLLRIDGQELWVGL--LGRFNAYNLLAVYGAAALLGLNRGE 315 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 ++ LS+ H GR ++ R A G ++D Y P +++ I + +I G+ + I Sbjct: 316 VLRVLSMLHAVSGRFEKIRAA--NGTTAIVD--YAHTPDALENVIQTIEEIRTPGQ-QLI 370 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 V G C G+ ++ ++A + Y + V+ S Sbjct: 371 VVCG--CG-GDRDRTKRPEMAAIAVKYATTAVFTS 402 >gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. 1-1C] Length = 484 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 146/371 (39%), Gaps = 36/371 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A+KG DG ++ A+Q+GA +++ + + V +LSIPV Sbjct: 21 ITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLSIPVI 78 Query: 87 GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 VL A +KLA+AA T++A+TG+ GKT+ + I A IG+ Sbjct: 79 ---HVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGTV 135 Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185 + IG P+ L R+ ++ D G+ FE L + R HL Sbjct: 136 GVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLA--- 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + H+ IE AK +F L L + D + + + Sbjct: 193 AAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHR 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + G++ L + + + +E ++ G N LM G+ Sbjct: 253 QVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIA 311 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A D ++L +G R N I Y P +++ +L + P Sbjct: 312 TNAPSDMVFRSLEKL---QGAPGRLELVGNTEDGAPIYVDYAHKPEALE---QMLLSVRP 365 Query: 366 HGEGRRIAVLG 376 +GR + V G Sbjct: 366 FTQGRLVLVFG 376 >gi|317489847|ref|ZP_07948342.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA] gi|316911052|gb|EFV32666.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA] Length = 173 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 9/155 (5%) Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL+ P+ GR + R +G FT+++++YNANP SM+A+++ + G+ +AV Sbjct: 23 DALAHAEPEAGRQEVLRA---RGGFTVVNDAYNANPDSMRASLATFCALDV--PGKHVAV 77 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETM 430 LGDM E+G + + H + E + + + G L + DA R+ + + ++ Sbjct: 78 LGDMGELGSYAPACHAGIGEFAATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSL 137 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +F + + + GD V+VK+S+ G R++ L+ Sbjct: 138 SEVFGDLDACVEPGDAVLVKASHFMGLTRVVEGLV 172 >gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris DP4] gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio vulgaris DP4] Length = 486 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 38/315 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF LL G +PQ I DSR + P + F A+ G DG FI AV +GA Sbjct: 7 TFDTLL----GRVAATLPQ-----IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA 57 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122 +VV D + + + V DD AL L AR + + ++ +TG+ GKTT Sbjct: 58 TMVVCRADGLQHLPEAAFAVAVHDDPRAALGALG-QARYGTASLPFPVVGVTGTNGKTTI 116 Query: 123 KEMLTIALSSIKKTYACIGS----YNNHI-GVPLT----------LARMP-VDVDFGIFE 166 +L +S + +G+ + H+ PLT L +M VD E Sbjct: 117 TYLLEHLFASAGRRCGVLGTVSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225 + L + R +R AV+T + HL +E +AKA +F L E + + Sbjct: 177 VSSHALDQERVAG--IRFAGAVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAV 234 Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQS-WMEVQLQGKSME 282 N DD + LL A+G G + L + +CS + + +G++ E Sbjct: 235 NADDPWGRRLLADLPGAVGFALT---GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWE 291 Query: 283 VVHHGIGYHMAQNML 297 V +G H A N+L Sbjct: 292 VDSPLVGAHNASNLL 306 >gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] Length = 482 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 37/366 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+++S+ + FFAIKG +DGH+FI A ++GA VVV + S +PV Sbjct: 23 VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPV-----SSKVPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL K A + + +I ITG+ GKTTT ++ L + IG+ Sbjct: 78 IVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIY 137 Query: 145 NHIGVPL--TLARMPVDVDF-----GIFELGMSH-LGEI------RFLTHLVRPHIAVIT 190 +G + + P + + +ELG + + EI ++ + R + T Sbjct: 138 YRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E+ ++KA++F E I +N DD++ + L +H I ++ Sbjct: 198 NLSQDHLDYHKTMEDYFASKAKLFTEYESKVKI-INADDTYGKRLLKITHG----EIITY 252 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G K D ++ ++ S + + +GK E + IG A N+ + + Sbjct: 253 G--KKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALWKGIEP 310 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D +AL + R+ + F +ID Y P +++ + ++S +G+ Sbjct: 311 DLIQRALKCVNVP----GRFEVVHSDKFTVIID--YAHTPDAVENVLRTARKLS---KGK 361 Query: 371 RIAVLG 376 I+V G Sbjct: 362 LISVFG 367 >gi|261838027|gb|ACX97793.1| UDP-MurNac-pentapeptide synthetase [Helicobacter pylori 51] Length = 493 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + YA S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|217033769|ref|ZP_03439195.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10] gi|216943818|gb|EEC23258.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10] Length = 493 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + YA S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus DSM 12680] Length = 461 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 30/285 (10%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138 L IPV ++L A L +K IAI G+ GKTTT M+++ L + + T+ Sbjct: 88 LGIPVIKRGEML---------ALLSNKYRGIAIAGAHGKTTTTSMISLVLEDNGLDPTFI 138 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + R V+ G EL ++ E + PH+AV+T + HL Sbjct: 139 IGGQ----------MQRSLVNAKLGRGELFVAEADESDASFLRLHPHVAVVTNVEDDHLD 188 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + E I SA + + G L D F LK KS A + +Y +G N+D+ Sbjct: 189 YYQSEENIRSAFQQFVNQVLPEGFAVLFSGDRFLAGLKQKSRA---RLVY-YGFDDNSDY 244 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 R+ + C S + +G+ + V+ + G H N + + + + + + +AL Sbjct: 245 FCREIRACGIGSAFKAYCRGQMLGDVYLKVPGIHNVLNAMAAIAVGCEVGVNFEGITRAL 304 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 F G +R+ T+ID+ Y +P +KA I Q Sbjct: 305 GGFL---GAKRRFEVVGKLNGITVIDD-YAHHPTEIKATILAARQ 345 >gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] Length = 483 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 105/435 (24%), Positives = 169/435 (38%), Gaps = 70/435 (16%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL I+ G V V ++ DSR++ + F A KG +DG+DF A++ G Sbjct: 1 MNLKELLNNIEAKIYGKVSPIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------ATIIAITGS 116 A +A S+ P V ++ + N + A L +K I+ +TG+ Sbjct: 61 A---------IAIASSIYNPFLSVVQIVSS-NLPQLEAELSAKYYNYPSKKLCIVGVTGT 110 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSY-----NNHIGVPLT----------LARMPVD-- 159 GKTT ++ K IG+ NN I T LA M + Sbjct: 111 NGKTTVSHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRL 170 Query: 160 ----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 ++ L + L E+ F + V+T I HL EE +AK ++F Sbjct: 171 TSAVMEVSSVGLVLERLAEVDF-------DVGVLTNITLDHLDFHGSFEEYINAKLKLFS 223 Query: 216 GLEKTGTIFLN----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 L TG +N Y F E+ +A+ GI+ AD++ + + Sbjct: 224 KLPATGLAVVNGDLSYASRFLEMTQAQPITYGIEC--------PADYRAMHLRSSPFGTD 275 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIK-ALSVFHPKEGRGKR 329 ++ +G+S+ IG H N+L + + D+ I A +V P RG R Sbjct: 276 FDLVYRGESLPCRLPLIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESP---RG-R 331 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + ID Y P +++ L + P +G+ I V G C G+ QS Sbjct: 332 LEPVFSGPCPIYID--YAHTPDALENVCKTLHALLPE-QGKLIVVFG--CG-GDRDQSKR 385 Query: 390 IDLAEVLSLYNISHV 404 +AEV+ Y + V Sbjct: 386 QIMAEVVERYGFAVV 400 >gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] Length = 489 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 162/381 (42%), Gaps = 48/381 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP + + DSR P FF +KG DGH+ I A+ GA +V+V+++ + I Sbjct: 10 VPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGA-IVIVHSEPIEKINP- 67 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 I V DV+ N++A + T+ +TG+ GK++ ++ L+ I+ T A Sbjct: 68 DITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRNILNQIEPT-AY 126 Query: 140 IGS----YNNHIGVPLTLARMPVD---------VDFGI----FELGMSHLGEIRFLTHLV 182 +G+ YNN + +P +A +D VD GI +E + + R + Sbjct: 127 VGTISIEYNN-VKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAIDQGRL--DAI 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +A+ T + HL + +AK ++F+ L++ +N DD + + A Sbjct: 184 DFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQLKEEAIAIVNVDDPSGMKIVQDTQA- 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++++G AD+++ + + + + + Y + N++ I Sbjct: 243 ---KVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHD---------YRLETNLIARFNI 290 Query: 303 VSILTADVDTAIKALS-------VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +++ A K +S + H + G+ R Q F ++D ++ A+ ++ Sbjct: 291 YNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERIQDGQPFNLIVDFAHTAD--GIEK 348 Query: 356 AISVLSQISPHGEGRRIAVLG 376 S I+P + R IA+ G Sbjct: 349 VCQYASSITP-KDCRIIAITG 368 >gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei VT8] gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter aquaeolei VT8] Length = 494 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 150/374 (40%), Gaps = 40/374 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82 ++G+ DSR + P +AF A+ G ++ A+ GA +++ ++ G+L Sbjct: 24 IHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESEQERQCHERHGALI 83 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV G+ LG + R +I +TG+ GKT+ + ++ L +G+ Sbjct: 84 VPVVGLRARLGRIADRFFEHPSR-HLRVIGVTGTNGKTSVTQYISQLLRETGTPCGLLGT 142 Query: 143 YNNHIGVPLTLARMP------VDVDF------------GIFELGMSHL--GEIRFLTHLV 182 G+P ++ V V+ + E+ L G + LT Sbjct: 143 LG--YGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDNLTMTG 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 AV T + HL +E AKA +F E ++ +N+DD F L + Sbjct: 201 ----AVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSV-INFDDPFGRQLYGQLEGQ 255 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + YS +++ + L+++ + V Q ++ +G A N+L L Sbjct: 256 CDRVRYSLHEAQT-ELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAALAT 314 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L V+ A+ + P GR +R+ + G ++D Y P ++ A+ L Sbjct: 315 VLTLGVPVERAVSVVRELSPPPGRLERFTGST--GKHVVVD--YAHTPDALANALEAL-- 368 Query: 363 ISPHGEGRRIAVLG 376 PH GR I V G Sbjct: 369 -RPHTRGRLICVFG 381 >gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] Length = 498 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 33/307 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G +P+ VN IS DSR I + F AIKG DGH++I +++GA LV+ + +I Sbjct: 17 GKLPKS-VNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQGAALVIASRYEDYNIE 75 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + ++ V ++ + +A A +A+TG+ GKT+ ++ L ++ ++ A Sbjct: 76 NCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSISTLVHNMLRNLDESSAF 135 Query: 140 IGS--YNNHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRF----------LTHLVRP 184 IG+ + + P+ DV I EL ++ + F + V Sbjct: 136 IGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKNLAFEASSHAMALGRIYNVDI 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-------LNYDDSFFELLKA 237 +A+ T + HL ++ A K+ +F L G F LN DD ++ ++ Sbjct: 196 DVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTL---GNNFSEAKYGVLNKDDDYYGIM-- 250 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS----MEVVHHGIGYHMA 293 S L + I K + ADF KQ E + Q S E + IG M Sbjct: 251 -SKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPEGTFECTTNYIGDFMV 309 Query: 294 QNMLMTL 300 N+L + Sbjct: 310 SNVLAAM 316 >gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] Length = 484 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + G++IDSR I F A+KG DGH FI AV++GA V++ N I V Sbjct: 23 IKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVLLENLPDTLDENVTYIQV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 ++ G + + R K ++ +TG+ GKTT +L + + N Sbjct: 83 TSTEEDAGKVATMFYGNPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCN 141 Query: 146 HIG---VPLT------------LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +I VP LARM ++ E SH R ++ L + Sbjct: 142 YINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECS-SHAIHQRRISGLTFVG-GIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL E +AK F+GL K N DD + + A ++ + Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDKNGMFMVQNTKA----SVKT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + ADF+ + + E ++E+ GK EV IG N+L G +L Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQFIGKFNVSNLLAVYGTAVLLGRQ 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A+S GR + + +GF ++D Y P ++ ++ + + G Sbjct: 312 PEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDSKGG 367 Query: 370 RRIAVLG 376 I V G Sbjct: 368 HVITVCG 374 >gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 500 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 153/380 (40%), Gaps = 47/380 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 ++ IS DSR I F AI G DGH FI AV +GAG++VV+ + + + Sbjct: 30 IHDISSDSRHIQVGWMFVAIVGNQEDGHFFIPQAVAQGAGVIVVSSMHQSQDFSHVVKAD 89 Query: 83 IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT-----IALSSIK- 134 IP+ VD+ L+ VAARL K I A+TG+ GKT+ + LSS + Sbjct: 90 IPILVVDNTRRFLS--LVAARLYGKHPEKIFAVTGTSGKTSVASFVQQISQHAGLSSFQI 147 Query: 135 ---KTYACIGSYNNHIGVP------LTLARMP------VDVDFGIFELGMSHLGEIRFLT 179 + +N + P LA + V ++ L L I+F+ Sbjct: 148 GPISLMPSLQREDNRLTTPSPVYIAQALAYLASQGTTHVSIEASSHGLDQHRLDGIKFIA 207 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLK 236 T H+ + +AK +FE L G+ I N DDS+ + Sbjct: 208 -------GSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLPKGSPAVICNNDDDSWSNKVM 260 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++H G + + S G K +L+ Q +++ + + ++GK + + G N Sbjct: 261 ERAHNAGCR-VLSVG-YKGTFIRLKNLTQINDKQQVSISVEGKDFDFLFPLQGAFQVSNA 318 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L++ G+ DV I+ L + G R+ N I Y P S++ Sbjct: 319 LVSAGLCIATGIDVPVVIEYLEKVNVIPG---RFEFIGNNSKGGRIYVDYAHTPNSLEMV 375 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L I+ GR I V G Sbjct: 376 LRNLRNIT---SGRIIVVFG 392 >gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] Length = 483 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 145/373 (38%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIP 84 + G++IDSR I F A+KG DGH FI A++ GA + V+ D+ V G + Sbjct: 23 ITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIELGA-ISVLCEDLPKVLQEGITYVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + L K ++ +TG+ GKTT +L + + Sbjct: 82 VESTEDAVGKVATL-FYGDPSHKLKLVGVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVC 140 Query: 145 NHIG---VPLT------------LARM-PVDVDFGIFELG-----MSHLGEIRFLTHLVR 183 N+I VP LA+M ++ E +G ++F L Sbjct: 141 NYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGLKFAGGL-- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL E +AK F+ L K N DD ++ + A Sbjct: 199 -----FTNLTRDHLDYHKTFENYRNAKKAFFDSLPKDAFAITNADDKNGMIMVQNTKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ ++ ADF+ R + E ++E+ EV IG N+L G Sbjct: 252 --TVKTYSIRTLADFRARILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGAA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + LS H GR + +GF ++D Y P ++ ++ + ++ Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHSP--EGFTAIVD--YAHTPDALANVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 G+G I V G Sbjct: 362 LD-GKGHVITVCG 373 >gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] Length = 508 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/397 (23%), Positives = 166/397 (41%), Gaps = 50/397 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83 ++GI+ S+ + P FFA+ G H+DGHDFI A+Q G+ ++V + D+ ++ + I Sbjct: 28 ISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNVIVCSRDLDFYNPNVTYIKI 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG 141 F + + + + + K +I +TG+ GK++ + + L +K + Sbjct: 88 DDFNIKKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLRKKGVKVGFISTV 146 Query: 142 SYNNHIG----------------VPLTLARMPVD-VDFGIFELGMSH---LGEIRFLTHL 181 +++ G + L L+ M + V + I E SH L R + Sbjct: 147 FFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILE-STSHGLDLETARLID-- 203 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240 V AV T I HL I+ + K +F + + G +N DD + K + Sbjct: 204 VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSYDFK---N 260 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ YS K+ ADF + + ++ + E +G + +G +N++ L Sbjct: 261 AIKKSFTYSL-KNSQADFFVSFINEKTDSTEFEFYHKGVKYFANVNLLGSFNVENVMAAL 319 Query: 301 GIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +VS IL +D+ + LS +GR L Q F +ID Y P + + Sbjct: 320 ILVSKILNSDIQDIVDNLSCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFPI 375 Query: 360 LSQISPHGEGRRIAVLGDMCE--------MGELSQSF 388 + + + R I+V G E G++S S+ Sbjct: 376 FKKFTTN---RLISVFGSAGERDFAKRFLQGQISDSY 409 >gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] Length = 484 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 + G++IDSR I F A+KG DGH FI AV++GA V++ N I V Sbjct: 23 IKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVLLENLPDTLDENVTYIQV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 ++ G + + R K ++ +TG+ GKTT +L + + N Sbjct: 83 TSTEEDAGKVATMFYGNPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCN 141 Query: 146 HIG---VPLT------------LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +I VP LARM ++ E SH R ++ L + Sbjct: 142 YINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECS-SHAIHQRRISGLTFVG-GIF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL E +AK F+GL K N DD + + A ++ + Sbjct: 200 TNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDKNGMFMVQNTKA----SVKT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + ADF+ + + E ++E+ GK EV IG N+L G +L Sbjct: 256 YSIKRMADFRAKILECHFEGMYLEI--DGK--EVGVQFIGKFNVSNLLAVYGTAVLLGRQ 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A+S GR + + +GF ++D Y P ++ ++ + + G Sbjct: 312 PEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDSKGG 367 Query: 370 RRIAVLG 376 I V G Sbjct: 368 HVITVCG 374 >gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 137/355 (38%), Gaps = 27/355 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFEWNPEWEVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L PVDV ++ + +S G + + V + T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E + K+ +F GL+ +N DD + EL +YS+G Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHA---VINVDDEYGAELAGRLKKDCPDLAVYSYGF 265 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S++AD ++ + S+ Q +G AQN+ + ++ +D Sbjct: 266 SEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDK 325 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L+ P G R C +N G L+ Y P +++ A++ L +I P G Sbjct: 326 VLDVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALATLQEIKPQG 376 >gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] Length = 485 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 40/253 (15%) Query: 22 VPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 PQG V G+++DSR + P + F A+ G DG FI A++KGA ++ + A Sbjct: 15 APQGADGVEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGAVCILAPKGVTA- 73 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV +D AL+ +A R ATI AITG+ GK++T E L ++ + Sbjct: 74 ----PVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEFL-------RQIW 122 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHL-------GEI 175 A G +G L + R D G + E G++HL G Sbjct: 123 AKAGIEAAALGT-LGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASSHGLK 181 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFEL 234 + VR + T + HL E+ S+K +F L G +N D + + Sbjct: 182 QRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSDWSQR 241 Query: 235 LKAKSHALGIKTI 247 + + + G+ + Sbjct: 242 VAQAAQSAGLSPV 254 >gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1; AltName: Full=Meso-A2pm-adding enzyme 1; AltName: Full=Meso-diaminopimelate-adding enzyme 1; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium acetobutylicum ATCC 824] gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum EA 2018] Length = 482 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 157/377 (41%), Gaps = 53/377 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + + FF I+G DGHDFI AV+KGA V+V T + + + + V Sbjct: 23 IDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGAD-VIVCTKVPKKLPNCT--VV 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D A+ + K +I ITG+ GKTT+ M+ L S IG+ Sbjct: 80 KVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTSTYMMKSMLESSGYKVGLIGTIA 139 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P L L ++ D +D+ + E+ L R + + Sbjct: 140 NYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDRVYGIVFEE--GI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK +F+ +++ +N DD + E + + I Sbjct: 198 FTNLTQDHLDFHKTFENYYKAKMILFKNSKRS---IINIDDKYGERVFKDAGNDKI---- 250 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++G ++ AD + K S +G ++ + G+ H+ N+ + + L + Sbjct: 251 TYGLTEKADLKAENLKMTS---------RGTEFDLCYRGLREHVKINIPGKYNVYNALGS 301 Query: 309 DVDTAIKALSVFHPKEGRGKRY----RCAL-----NQGFFTLIDESYNANPASMKAAISV 359 + +S+ K+G K RC + N F ++D Y P ++ + Sbjct: 302 VAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLD--YAHTPDGLEKVLKA 359 Query: 360 LSQISPHGEGRRIAVLG 376 + + +GR I+V G Sbjct: 360 SREFT---KGRLISVFG 373 >gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus TCF52B] gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus TCF52B] Length = 514 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 23/312 (7%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R +A+TGS GKT+TK L ++ K+ SYN +G+ T+ R +D + Sbjct: 164 RLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTI-REKLDKSHEV 222 Query: 165 FELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEE-IASAKAEIFEGLEKTG 221 F + ++ + L L++P I+++T+I H F ++ I + K I + E++G Sbjct: 223 FIVELAENDNYGYSKLLELIKPQISILTSIGIQHFEEFESLDNIIQNFKNFILD--ERSG 280 Query: 222 -TIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQ 277 I N DD E +K + K I KNA +++ + K + ++ + Sbjct: 281 KKIIANIDD---ENIKNVLENIDTKKEIITCAINEKNAQYKVEELKISKDGANFAIITPN 337 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQ 336 + + GY +N+L+ + L V+ I +A ++ PK R N Sbjct: 338 NQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKH----RLEIVRND 393 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 T+ID+++N+NP K A+ L+ R+I V E+GE H + + + Sbjct: 394 T-ITVIDDTFNSNPKGFKMALEYLALFE---NKRKILVTPGFVELGEKEDEEHYKIGKEI 449 Query: 397 SLYNISHVWLSG 408 + Y + V+L G Sbjct: 450 AKY-VDVVFLIG 460 >gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK353] Length = 459 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAF----YPQIAVITNLMPTHLDYHGSVEEYAVAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+V G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] Length = 487 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 157/397 (39%), Gaps = 60/397 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 HDLLQ V GI+ DSR + F A+ G DGH + AV++GA Sbjct: 12 HDLLQGDADTD--------VTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAVA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 +V+T +L+I V +L + + +++ITG+ GKT+T ML Sbjct: 64 ALVSTTAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAAMLE 123 Query: 128 IALSSIKKT-YACIGSYNNHI-GVPLTLA----------------RMPVDVDFGIFELGM 169 ++++ IG+ + G+P+ L R D G + Sbjct: 124 SVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVVMEA 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S L + I V T ++P HL + ++ +AK +F G+ + N DD Sbjct: 184 SSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGMSSDAVV--NTDD 241 Query: 230 SFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 E+L+ A +FG K ADF R + EV G +VH G Sbjct: 242 PVSQEILERMPRA------TTFGMDKTADFTARAF---------EVSATGTRFLLVHDGQ 286 Query: 289 GY--HMA-------QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 Y H+ N L + + L + A+ AL GR + R A G Sbjct: 287 EYPAHLPIPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRA--DGTS 344 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D +++A+ S++ + L ++S GR + V G Sbjct: 345 IVVDYAHSAD--SLEKTLRTLREVS---SGRLLTVFG 376 >gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1057] Length = 459 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYIEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+V G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQVAEIGVPGSHNVENALATIAVAKLHGIDNQTIKEVLSAF 316 >gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 494 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 39/371 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I +DSR + P F AI+G DG FI AV +GA V+ D +L +P G+ Sbjct: 25 IQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEEDGEFVAPALGVPCLGIP 84 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ L++LA + SK ++ ITG+ GK+TT ++ + + +G+ N + Sbjct: 85 DLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCTLLGGKAGVMGTIGNGL 144 Query: 148 GVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193 L A + V + + + L + +H + H AV T ++ Sbjct: 145 FGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPFAAAVFTNLS 204 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFG- 251 HL +E +AK E+ + + + + LN DD + L A A+ Sbjct: 205 RDHLDYHGTMEAYGAAKEELLKLVAEPCAV-LNADDRLGRQWLAAYPAAVAFSVHGPVAG 263 Query: 252 ------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +++ F + ++ SW L + G N+L +G + + Sbjct: 264 HPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLL-------GRFNVSNVLAAMGAMLV 316 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D D + + P G R C G L Y P +++ A+ L Sbjct: 317 LGYDFDELLASAPQLQPVTG---RMEC-FGGGKAPLAVVDYAHTPDALEKALQALRV--- 369 Query: 366 HGEGRRIAVLG 376 H EGR ++G Sbjct: 370 HCEGRLWCLVG 380 >gi|317180502|dbj|BAJ58288.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F32] Length = 493 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + YA S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas sp. SN2] Length = 530 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 37/239 (15%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+++DSR + + AF A+KG DG DFI A+ GA +++ TD + G + Sbjct: 22 PDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDDSQAHGQME 81 Query: 83 -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 I ++ + +L AL A K +A+TG+ GKT+T ++LT ++ Sbjct: 82 MRDHSVIISLYQLPSMLSAL-AAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQLKDALGT 140 Query: 136 TYACIGSYN---------------------NHIGVPLTLAR-MPVDVDFGIFELGMSHLG 173 A +G+ N I + LA + +V FE L Sbjct: 141 RSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHTAFEASSHALV 200 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS 230 + R V+ IAV T + HL +EE A AK + + GLE + LN +DS Sbjct: 201 QGRL--SQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLE---AVVLNVNDS 254 >gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] Length = 494 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 99/391 (25%), Positives = 146/391 (37%), Gaps = 42/391 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL +I + G + I DSR + F I G DGH F A GA ++ Sbjct: 9 LLTSIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAIL 68 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLT 127 ++ +SIPV V D A+ LA K +I +TG+ GKTT ++ Sbjct: 69 AEKEI-----DVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVE 123 Query: 128 IALSSIKKTYACIGSYNNHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH 171 + IG+ IG P LTL R + DV E+ Sbjct: 124 QIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHA 183 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFL 225 L + R T+ IAV T ++ HL +EE A AK+ +F L EK + Sbjct: 184 LVQGR--TYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAII 241 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + +K + A + ++G K ADF S + ++ +V Sbjct: 242 NQDDPVSQRMKTATAA----PVITYGIDKAADFGATDVMVTSSGTTFKLHTPDGDFDVRI 297 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG N L L L + AI +L GR + Q F ++D Sbjct: 298 KMIGKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAGRFEIVDAG--QDFTVIVD-- 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P + ++VL I R A++G Sbjct: 354 YAHTPDGL---LNVLETIEEFKRSRVFAIVG 381 >gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 492 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 156/396 (39%), Gaps = 48/396 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDM---VASIGSLS 82 G + D + P F A+ G G + A+ +GA V+V+ D+ A + ++S Sbjct: 27 GTTFDVGRVTPGSLFIAVPGHGEGGPGSVGPALARGAAAVLVDGGAPDLPMSAAGVCAVS 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIG 141 +P + A R + ++AITG+ GKT+ M+ L S T IG Sbjct: 87 VPDTRTAAAVVASRYFGAPGR---QMDMVAITGTNGKTSVSYMVESVLRLSEGATVGVIG 143 Query: 142 SYNNHIG-----VPLTLARMPVDVDFGIFELGMSHLG---------EIRFLTHLVRP--- 184 + + IG +P ++ P D M G + LTH V Sbjct: 144 TAGSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRGAGSVVLEATSMALLTHRVDCAFI 203 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + V T + HL + +E AK +F+GL + + N DD ++A G Sbjct: 204 DVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRRAVV--NADDPVGAGIQAMMP--GA 259 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T Y ++ AD++ + + + + G+ G + N L T+ Sbjct: 260 VTTYGL-DTEAADYRATELTVDASGTRFVLHHDGRKYPAAIPVPGRYSVANALATVAACH 318 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D+ + AL P GR +R+R +G ++D Y +P S+ ++ + + Sbjct: 319 ALGHDLGGLVAALDRMPPVPGRFERFRTP--RGTSVIVD--YAHSPDSLDKVLTTIRGFA 374 Query: 365 PHGEGRRIAVLG--------DMCEMGELSQSFHIDL 392 P GR I V G EMGE++ + H DL Sbjct: 375 P---GRVITVFGCGGDRDTTKRAEMGEIAGT-HSDL 406 >gi|261839440|gb|ACX99205.1| UDP-MurNAc-pentapeptide sythetase [Helicobacter pylori 52] Length = 493 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+T + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum PYR-GCK] gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 475 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 32/314 (10%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149 + AV ARL T + +TG+ GKT+T M+ +AL ++A G N H G Sbjct: 107 RPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFAVGGDLGQAGTNAHHGS 166 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 T + D + E P +AV+T I HL + +E + Sbjct: 167 GSTFVAEADESDGSLLEY---------------SPDVAVVTNIEADHLDFYGTVENYTAV 211 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 + + ++ G + + DD L ++ ALGI+ + +G + D L W Q Sbjct: 212 FDQFVDRIKPVGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLDATLLDWSQLGTG 270 Query: 270 SWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + E+ ++ + G HMA N L L + AD+D + L+ F +G Sbjct: 271 AVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGADIDAVLDGLAGF---DGVR 327 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQ 386 +R+ G + D+ Y +P ++AAI+ L ++ G R +AV + ++ Sbjct: 328 RRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAVF--QPHLYSRTE 384 Query: 387 SFHIDLAEVLSLYN 400 +F + A LS + Sbjct: 385 TFATEFAASLSTAD 398 >gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] Length = 482 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164 TT +L I + N+I P+T L RM + + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 F SH + ++ L + + T + HL +E AK + F+ L K Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344 Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC 35896] Length = 510 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/346 (23%), Positives = 140/346 (40%), Gaps = 38/346 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--V 100 F IKG DGH ++ AV+ A + VV T + IP V+D AL ++ Sbjct: 40 FVCIKGYKADGHKYLASAVEHNAIVAVVET-----FQDIDIPQVKVEDSRIALATMSSNY 94 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-----SYNNHIGVPLTLAR 155 K T+I IT + GKTTT M+ L KK IG S N I LT Sbjct: 95 YDNPSKKMTVIGITATNGKTTTAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLT--- 151 Query: 156 MPVDVDFGIF-----ELGMSHLG-EIR------FLTHLVRPHIAVITTIAPAHLSNFSGI 203 P +D + E G++HL E+ H V I+ H+ Sbjct: 152 TPESLDLQKYMAMMVEQGVTHLTMEVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSF 211 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYS-----FGKSKNAD 257 E+ K+ + G++ + +N DDS +L++ K + + ++ S + + Sbjct: 212 EDYFQIKSTLIRGMKPSAKAVINADDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLS 271 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + WK + + L +++ GYH N + + + + D+DT L Sbjct: 272 TGIANWKIVPNPTKSTLSLLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGL 331 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 H +G +R+ ++ F +ID+ + AN +++ + L ++ Sbjct: 332 ---HSFKGVERRFELIYDKE-FKIIDDHF-ANTGNIRVTLETLKKM 372 >gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus Kuenenia stuttgartiensis] Length = 489 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 35/224 (15%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVF 86 G++ DSR + F AIKG DGHDFI A++KGA VV D V ++ + +P Sbjct: 25 GLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKGAIAVVAEKGVDYVINVPQIVVP-- 82 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL+ L+ SK TI+ ITG+ GKTTT + S IG+ Sbjct: 83 ---NARRALSLLSEYFYGYPSSKMTIVGITGTNGKTTTSFFTKSIIESSGNKAGLIGTIY 139 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGE-----IRFL-----THLVRPHI------ 186 +G + A P VD SHL + IR+ +H + H Sbjct: 140 YQLGSRIIPANETTPESVDI------QSHLSDMLNNNIRYAVIEASSHALSQHRLDGVHF 193 Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 AV T ++ HL I+ K ++ GL++ + LN D Sbjct: 194 RSAVFTNLSAEHLDYHENIKNYREEKIKLMRGLDENASAVLNAD 237 >gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 467 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 97/429 (22%), Positives = 182/429 (42%), Gaps = 59/429 (13%) Query: 61 VQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 ++KG LVV N ++VA+ + +P+ +LG + +R+ I I Sbjct: 66 IEKGIELVVYTAAIHPDNPELVAAKKA-GLPIISRAGLLGEI--------MRNYRNAINI 116 Query: 114 TGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +G+ GKTTT M+ I L + +G IG ++ G E ++ Sbjct: 117 SGTHGKTTTTSMIAEILLEADWDPTVTVGGMMRDIGG---------NIRVGQSENFIAEA 167 Query: 173 GEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 E FL+ P I V+ + HL F +E+I + E L + G + +N D Sbjct: 168 CEYTNSFLSFY--PTIEVVLNVEADHLDFFKDLEDIRHSFRRFTEKLPENGLLVINRDIP 225 Query: 231 FFELLKAKSHALGIKT-IYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHG 287 +E G++ + ++G ++AD+ + + S+ + +GK + + G Sbjct: 226 HYEYFTE-----GLRCRVLTYGHDRDADYTANFISYDHYAHPSYTLFE-RGKELGPISLG 279 Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + G H N L + + L +++T +AL F +G +R++ FT+ID+ Y Sbjct: 280 VTGEHNIYNSLSAIAVGRALGIELETIRRALHRF---QGTDRRFQKKGEVCGFTIIDD-Y 335 Query: 347 NANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +P + A I + PH R A++ D G LSQ+ I LA++ + Sbjct: 336 AHHPQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFA--GALSQADEIVLADIYA 393 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + V +S + + L ++ +V+Y + F+ L GD+++ + Sbjct: 394 AREKNTVGVSSEDL--RRHMLEQNTNVYYIPDFQRIEDFLMERLQPGDLLITMGAGD--I 449 Query: 458 YRLINLLLE 466 YR+ + LL+ Sbjct: 450 YRVGDALLK 458 >gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] Length = 482 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164 TT +L I + N+I P+T L RM + + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 F SH + ++ L + + T + HL +E AK + F+ L K Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344 Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|317177431|dbj|BAJ55220.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F16] Length = 493 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+T + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|308063475|gb|ADO05362.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori Sat464] Length = 493 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D D I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSDIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] Length = 482 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 47/394 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164 TT +L I + N+I P+T L RM + + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 F SH + ++ L + + T + HL +E AK + F+ L K Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD ++ + + +Y++ +DF+ R E + + L + E+ Sbjct: 235 TNLDDKNGLVMTQNTRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344 Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] Length = 486 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 35/388 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ I+ I Q + I IDSR + Q F A++G DGH +I A+++GA Sbjct: 3 IENLIKGIETKKIIGPVQNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 V + + + + I V AL LA SK ++ +TG+ GKTT Sbjct: 62 -VAILCEDLPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTVAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVDV-----DFGIFELG 168 +L + + + N+I P +T+ ++ D+ D+ E+ Sbjct: 121 ILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + ++ L + + T + HL I AK E F+ L K +N D Sbjct: 181 -SHAIDQKRISGL-KFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNLPKNAFSLVNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + I+++ DF+ R E + + L+ + +VV Sbjct: 239 DKNGMVMVQNTKS----AIHTYSLRSLCDFKAR----VIESHFNGMILEINNTDVVVQFT 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D + A+S GR + + +G+ ++D Y Sbjct: 291 GKFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAP--KGYTVIVD--YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ ++ + I G+G+ I V+G Sbjct: 347 TPDALTNVLTTIHDILD-GKGKVITVVG 373 >gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] Length = 488 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 27/256 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ IS DSR++ P F A G + G DFI AV GA V++++ ++ ++ +PV Sbjct: 25 VSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADGAVAVLIDSSELSDCPNVDVPVI 84 Query: 87 GVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 G+ D++ + VAAR + T++ ITG+ GKT+ + A+++I A +G+ Sbjct: 85 GISDLVSEIGP--VAARFYEQPSRAMTVVGITGTNGKTSCAHFVAQAMNNIGVKTAIVGT 142 Query: 143 YNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 N IG+ A + + + E+ L + R V Sbjct: 143 VGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVVMEVSSHALEQGRVAA--VDFDY 200 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS-HALGI 244 + T ++ HL +E AKA +F+ + +N DDSF +LL+ +S A + Sbjct: 201 GLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLKAAL-INGDDSFGRKLLRDESIEARKV 259 Query: 245 KTIYSFGKSKNADFQL 260 FG+ A ++L Sbjct: 260 SVGRLFGQYHFAAYRL 275 >gi|331701578|ref|YP_004398537.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL B-30929] gi|329128921|gb|AEB73474.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL B-30929] Length = 443 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 115/283 (40%), Gaps = 38/283 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I ++G+ GKT+T +L LS I T IG + GVP + F ++E Sbjct: 105 TSIGVSGAHGKTSTTGLLAHVLSGIAPTDYLIGDGSGK-GVP--------NARFFVYEAD 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R P A++T I H + I+++A A + F K G IF D Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKSIDDVADA-FQTFANQTKKG-IFAWGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D LKAK IY +G DFQ K+ + S +V +GK++ + Sbjct: 209 DKRLRQLKAKV------PIYYYGLKDTDDFQAVDVKRTTSGSSFDVTYKGKNLGNFSVPL 262 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + D+D K L F +G +R+ G T+ID+ Y Sbjct: 263 FGEHNIFNSLAVIAVAYFEDVDLDEIRKELKTF---QGVKRRFAERKIAG-MTIIDD-YA 317 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380 +P +KA I Q PH R IA++ D + Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360 >gi|325570066|ref|ZP_08145991.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325156894|gb|EGC69065.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 444 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 44/301 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS I+ T IG H G P D +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIGDGTGH-GEP--------DAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H F I+++ SA + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYFHSIDDVFSAFQSMASQVKK--GIFAF 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + L+A IY +G + N D Q + ++ ++ S +V + G+++ V Sbjct: 208 GDDEYLRKLEADV------PIYYYGVNDNDDVQAKNIERTTQGSEFDVFIHGENIGHFVL 261 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + + D+ + F G +R+ + T++D+ Sbjct: 262 PAFGQHNINNALSVIAVAYKEGLDMKEVAAEMLSF---PGVKRRFSEKIVAD-MTIVDD- 316 Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +PA +KA I +++ PH R IA++ + E +L+ H+ L ++ Sbjct: 317 YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLAD--HVYLCDI 374 Query: 396 L 396 Sbjct: 375 F 375 >gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] Length = 499 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 150/375 (40%), Gaps = 41/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+ +DSR + P FFA+ G DG FI AV +GA V + T + + + V Sbjct: 25 ISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGA--VAIVTQKMPAHPPGKVTVI 82 Query: 87 GVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D L + VA R T+I +TG+ GKTT +L L+ ++ +G+ Sbjct: 83 QVADARATLAR--VAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV-GLLGT 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGE--IRFLTHLVRPH-------------IA 187 N +G A I+ + M+ + + R V H A Sbjct: 140 INYDLGARTVPAYRTTPESLDIYGM-MAQMRDAGCRQAVMEVSSHGIDQQRVAGLQFGAA 198 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFELLKA--KSHA 241 V T + HL ++ K +F G TG +N+DD + L A K Sbjct: 199 VFTNLTRDHLDYHKTLDAYFEVKKRLFTG--GTGAAPKVAVVNFDDPYGVTLAASLKREH 256 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + +FG++ AD + S + G +ME+ IG + N+L + Sbjct: 257 QSAKLV-TFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLLAAIA 315 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L D + L F GR + R Q + L+D ++ + +++ A+ +L Sbjct: 316 AAWGLGRDPFVFLARLRAFKGVPGRME--RIDEGQPYNVLVDYAHTDD--ALRNALGMLR 371 Query: 362 QISPHGEGRRIAVLG 376 I+P GR V G Sbjct: 372 AITP---GRLFVVFG 383 >gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] Length = 480 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 160/369 (43%), Gaps = 37/369 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR++ P + FFA+ G DG FI A++ GA VV + S+S+PV Sbjct: 22 VAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAVAVVAD-----HAHSVSVPVI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT---KEMLTIALSSIKKTYACIGSY 143 + AL A A R TI A+TG+ GKT+ L +L + IG Sbjct: 77 VTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAAFTRQLWDSLGYDAASLGTIGIV 136 Query: 144 NNHIGVPLTLARM-PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVITTI 192 + H V +L PV + + EL G++HL G + VR A T + Sbjct: 137 SRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEASSHGLDQHRLDGVRIAAAAFTNL 196 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYS 249 + H+ +E +AK +F L G I +++ S + A++ L + TI Sbjct: 197 SRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADHEHSAAVIAAARARKLDVITIGR 256 Query: 250 FGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G+ + D + + Q M +Q +G++ + +G +N L+ G+V Sbjct: 257 KGEGIRLVDATIDGFGQ-----KMTIQHRGQTHRLRLPLVGEFQIENALVAAGLVIATGG 311 Query: 309 DVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D A K S EG +G+ +G +D ++ + A MKA L + P+ Sbjct: 312 D---ATKTFSALEQLEGAKGRLELIGDCRGAPVFVDYAHKPD-ALMKA----LEALRPYA 363 Query: 368 EGRRIAVLG 376 +GR + V G Sbjct: 364 KGRLVVVFG 372 >gi|317129301|ref|YP_004095583.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM 2522] gi|315474249|gb|ADU30852.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM 2522] Length = 316 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 30/286 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAF----FAIKGPHYDGHDFILHAV 61 FH LL+ I H G +P FV GI+ + + +E F ++ + D ++ A Sbjct: 8 FH-LLKTISSHIHGEIPLSFVAKGIATNINDV--KEGFIYLPLDLENENNGITDHLMKAK 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + D++ S S ++P+F V+D + +LA T++AI G + Sbjct: 65 EHGAVASFIKKDLITSSLSHNLPLFEVEDYTSTIEQLAKEYVDEIDPTVVAIVGK-NSSF 123 Query: 122 TKEMLTIALSSIKKTYAC-----IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TK++L L K YA + Y + + V L+ +M + I E ++ + I Sbjct: 124 TKDLLAHIL---KTNYAVHKSDHLSKYED-LHVCLSALKMERHANVFISEYDLNSIHHIT 179 Query: 177 FLTHLVRPHIAVITTIAPAH-LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L+HL P+ +IT I LS EE+ +A + G+ T ++ L+ DD F Sbjct: 180 KLSHLFPPNYGIITEIGKREKLSE----EEVRAAYISLESGMRATASLVLDADDEFL--- 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 H + + S G +K+ FQ+ K+ E+ + L+G M Sbjct: 233 -VHHHEWKVDVVTS-GSTKHCLFQIDTLKENGEE--LHFSLKGVYM 274 >gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 103/437 (23%), Positives = 180/437 (41%), Gaps = 56/437 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ--KGAGLVVVNTDM------VASIGSLSIP 84 D +S A E ++ Y GH A + K ++VV+T + V + + IP Sbjct: 37 DLKSTATTERLASLGATCYTGH-----AAENLKDVDMLVVSTAIADDNPEVVAAKRMGIP 91 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM--LTIALSSIKKTYACIGS 142 + ++L ARL + IA+ G+ GKTTT M L + ++ + T IG Sbjct: 92 IVRRGEML---------ARLMKEKQGIAVAGAHGKTTTTSMTALVLEMNGLDPTI-LIGG 141 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 ++IG L R G + + + + FL L+ P +AV+T I HL + Sbjct: 142 DLSYIGGNAKLGR-------GDYLVAEADESDGSFL--LLDPVVAVVTNIEDDHLDYYGS 192 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLR 261 E I A E + ++G + DD L A + ++G + AD+ + Sbjct: 193 RENIVKAFREFLNKVPESGLAVVCGDDPTVRQLIADLTC----PLVTYGSYNSGADYTID 248 Query: 262 KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + E + +V +G+ + ++V + GYH N L + + + AL F Sbjct: 249 SFALQGETTLGQVSFRGEKLGQLVLNVPGYHNLLNALAVVAVGRYVGLSFSQIAAALREF 308 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG---- 376 +G +RY+ ++D+ Y +P +KA + Q P GR IAV Sbjct: 309 ---KGAKRRYQLIGEVKGAKIVDD-YAHHPTEIKATLQAARQAHP---GRIIAVFQPHRF 361 Query: 377 --DMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMD 431 E +SF H D+ + +Y + G H + DA+ + + V Y T++ Sbjct: 362 TRTRQLFREFGESFAHADILILTDIYPAGEKPIEGVHTKLIVDAIAKRPNQQVIYLPTLE 421 Query: 432 GLFLFIQSSLVDGDVVV 448 F+ + +GD+V+ Sbjct: 422 EATNFLTQQVTEGDLVL 438 >gi|332673458|gb|AEE70275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Helicobacter pylori 83] Length = 493 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+T + HL F +E I KAE Sbjct: 214 NQNLDDKSEIYIAEAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus flavithermus WK1] gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus flavithermus WK1] Length = 447 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+A II ITGS GKTTT ++ L K+ G+ V +A+ D + Sbjct: 107 SEAPIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGT---VACEVAKHATKDDIIVM 163 Query: 166 ELG-MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL LG IRF RPHIAV+ I AHL E A AK IF+ +T Sbjct: 164 ELSSFQLLGTIRF-----RPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIFKNQTETDYAV 218 Query: 225 LNYDDSFFELLKAKSHA----LGIKTIYSFGKS 253 +N DD L KS A +KT S+G + Sbjct: 219 VNADDPIVMQLAKKSRARHVPFSVKTPLSYGAT 251 >gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] Length = 477 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F AI G +DGH FI A++ GA +V+ D+ G I Sbjct: 23 ITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDG---INYI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD AL +++ V K +I +TG+ GKTTT M++ L + IG+ Sbjct: 80 KVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSPCTNIGTNG 139 Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183 I P T + ++ VD +D + E L + L I F Sbjct: 140 TFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLDGIDF------ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV ++ H+ +E AK +FE +K N DD + KA+ Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244 Query: 244 IKTIYSFGKSKNADFQ 259 + Y+F +DF+ Sbjct: 245 FEDTYTFSLENESDFR 260 >gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 479 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 45/381 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IP+ ++LG + +R+ +A++G+ GKTTT M+T L + G+ Sbjct: 114 IPMLSRAELLGEM--------MRNYKQAVAVSGTHGKTTTTSMITDILLA--------GN 157 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200 + I V L + ++ G EL ++ E FL+ P + VI I HL F Sbjct: 158 LDPTISVGGILQDIGGNIRVGSPELFVTEACEYTNSFLS--FHPTMEVILNIEEDHLDFF 215 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 I++I + E L G + +N S + ++ + LG + + +FGK ++ + Sbjct: 216 KDIQDIRHSFRLFAEKLPSRGLLVIN---SGIDAVEEITKGLGCRVV-TFGKDSSSTYTA 271 Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + + S+ ++ +QG+ + + G+ G H N L + + L A D + L Sbjct: 272 KDITYDGFARPSY-DLVIQGEVVNRITLGVTGEHNVYNSLAAIAVAMELGAGFDAVMAGL 330 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368 F G +R+ G T+ID+ Y +P +KA +S PH Sbjct: 331 RKF---TGTDRRFEKKGEIGGITIIDD-YAHHPQEIKATLSAAKNYPHRKLWCVFQPHTY 386 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 R A L E LS + + LA++ + + +S + + L HY Sbjct: 387 TRTKAFLDQFAET--LSAADEVILADIYAARETDTLGVSSRDIAQRIERL--GTKAHYIP 442 Query: 429 TMDGLFLFIQSSLVDGDVVVV 449 + D + FI + ++GDV++ Sbjct: 443 SFDDIETFILENCINGDVLIT 463 >gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 515 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 32/217 (14%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+++DSR + + AF AIKG DG DFI A+ GA +++ TD + G + Sbjct: 22 PDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDDSEAHGQME 81 Query: 83 -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 I ++ + +L AL A K T +A+TG+ GKT+T ++LT ++ Sbjct: 82 MRDHSVIISLYELPQMLSAL-AAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQLKDALGT 140 Query: 136 TYACIGSYNNHI--GVPLTLARMPV--------------------DVDFGIFELGMSHLG 173 A IG+ + + G + P +V FE L Sbjct: 141 RSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAFEASSHALV 200 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + R T V+ IAV T + HL +EE AK Sbjct: 201 QGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAK 235 >gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] Length = 487 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 56/382 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G +DG I A+Q+GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVAYEVEGATVLPLTDVPL 76 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + N I V TLA + V ++ L + + F Sbjct: 135 TLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQGRVAALAF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV+T ++ HL +E +AKA++F + + +N DD F L A H Sbjct: 192 ----DVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCRV-INLDDDFGRQLAADKH 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHH----GIGYHMAQ 294 + T YS + + C E + + ++ + + HH +G Sbjct: 247 ESRLIT-YSLEDAA-------AYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLS 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L +G + L +D + L GR +R L G L+ Y P +++ Sbjct: 299 NVLAAVGALLGLEYALDEILAVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE 354 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 VL + PH +GR + + G Sbjct: 355 ---KVLLALRPHAKGRLLCLFG 373 >gi|332686694|ref|YP_004456468.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC 35311] gi|332370703|dbj|BAK21659.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC 35311] Length = 446 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 52/307 (16%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TG+ GKT T +L LS +K T IG H G P D +F FE Sbjct: 108 TSIAVTGAHGKTGTTGLLAHVLSGVKPTSYLIGDGTGH-GNP--------DAEFFAFEAC 158 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + FL++ P A++T I H ++ IE++ SA + ++K IF D Sbjct: 159 EY---QRHFLSY--SPDYAIMTNIDFDHPDYYTSIEDVYSAFQSLANQVKK--GIFAYGD 211 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + L A IY +G ++N D Q + ++ ++ S +V +GK + H + Sbjct: 212 DKYLRKLNADV------PIYYYGVNENDDIQAKNIQRTTKGSSFDVYYEGKF--IGHFDL 263 Query: 289 GYHMAQNMLMTLGIVS---ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDE 344 + N+L LG+++ D+D + F +G + R Q G +ID+ Sbjct: 264 PAYGQHNILNALGVIAAAYFEELDMDEVAIEMKTF-----KGVKRRFTEKQIGDMIIIDD 318 Query: 345 SYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 Y +P + A I +++ PH R IA+L + + +DLA+ Sbjct: 319 -YAHHPTEISATIDGARQKYPNKEIVAVFQPHTFTRTIALLDEFGKA--------LDLAD 369 Query: 395 VLSLYNI 401 + L +I Sbjct: 370 YVYLCDI 376 >gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 441 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 159/378 (42%), Gaps = 57/378 (15%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGH---DFILHA--VQKGAGLVVVNTDMVASIGSLSIPVF 86 ID+R P + P ++G D++L+A V G+ + ++ + S IPV Sbjct: 40 IDTRENVPGRERLSSSVPLHNGSFNLDWLLNADLVVTNPGIALATPEIQQVLAS-GIPVV 98 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 G ++ N +IAITGS GK+T + ALS+ A G + Sbjct: 99 GDIELFAWDND----------KPVIAITGSNGKSTVTDWTGQALSAAGLDVAVGG----N 144 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP L + D + EL L T ++ +AV ++ H+ + +++ Sbjct: 145 IGVP-ALDLLQHQADIYVLELSSFQLET----TSSLKSKVAVFLNLSEDHMDRYRSMDDY 199 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH---ALGIKTIYSFGKSKNADFQLRKW 263 +AK IF+ + +N DD LK S+ +L KT ++ + +F + Sbjct: 200 RNAKLRIFDNAD---VRIVNADDIATYPLKDSSYLEFSLDKKTDFAVTTQDDVEFFTLQG 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K+ S E+ L +G H N L+ L ++ + D++ +AL V Sbjct: 257 KKVLSTS--EISL-----------VGRHNVSNCLVVLALLHSVGVDIE---RALPVIKSY 300 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R + L+ G +++S N AS KAA++ L EG+ ++G + + + Sbjct: 301 SGLTHRCQVVLDNGGIKWVNDSKATNLASTKAALTGLRM-----EGKLFLLVGGVSKGAD 355 Query: 384 LSQSFHIDLAEVLSLYNI 401 S+ LA +L N+ Sbjct: 356 FSE-----LAPILKNLNV 368 >gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 486 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 64/388 (16%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIG 79 P+ + G+ IDSR + +F ++G +DGH+FI ++KG +V + DM + Sbjct: 11 PEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVDDMKKGVA 70 Query: 80 SLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + V++V LN++A K + +TG+ GK+T +T + + + Sbjct: 71 YIQ-----VENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKST----ITSIIRDVYSHF 121 Query: 138 ACIG-------SYNNHIGVPLTLAR---------MPVDVDFGIFELGM---SH---LGEI 175 A G SY + +P +L M V+ G+ + + SH LG + Sbjct: 122 APCGYIGTISISYG-EVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRV 180 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + V +AV + + HL IE AK ++F L+K G LN DD++ + L Sbjct: 181 Q----SVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKEGVAVLNADDAYVDQL 236 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + A ++ ++G +A +Q + ++ G +VH Y ++ N Sbjct: 237 ADATEA----SVVTYGIDNHATYQAENIR---------IEKTGSRFTLVHGTERYEVSTN 283 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNA 348 ++ I ++L A A + + ++ G+ R Q F ++D + Sbjct: 284 LVALYNIYNLLGAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDEGQLFNVIVD--FAH 341 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P M+ I+ G IAV G Sbjct: 342 TPDGMEKVFEYAKDITEDGHS-IIAVFG 368 >gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM 43021] gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM 43021] Length = 468 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 26/286 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153 + + A A + + T +A+ G+ GKTTT MLT+AL + C+G L Sbjct: 102 IPRAAALASVMAGRTGVALAGTHGKTTTTSMLTVALQKCGADPSYCVGGQ---------L 152 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 + D G E+ ++ E ++ P IAV+T + P HL N+ + + A Sbjct: 153 VTTGLGADEGAGEVFVAEADESDGSFLMLAPEIAVVTNVEPDHLDNYGDPRAVYDSFARF 212 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 E + K ++ + DD L + A G+K + ++G+++ ADF++ + + Sbjct: 213 VERVGK--SMVICADDPGSAALVPIARARGLKVV-TYGEAEGADFRVSGI--LPDGLGIS 267 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 ++G+ EV G H A N + + L D L+ F G +R+ Sbjct: 268 FAVEGRG-EVRLAVPGRHNALNATAVIAVAMELGVSFDEIRDGLAAF---TGAKRRFEAK 323 Query: 334 LNQGFFTLIDESYNANP----ASMKAAISVLSQISPHGEGRRIAVL 375 G + D SY +P A ++AA V++ S G GR IAV Sbjct: 324 GEAGGVAVFD-SYAHHPTELAADLRAARDVVASFS--GSGRVIAVF 366 >gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] Length = 493 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 27/225 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 V+ + +DSR + P F A++G DG FI A+ KGA VV GS+ Sbjct: 27 VSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVAQESSEHPHGSIEVQAG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV ++ + L+ LA +I +TG+ GKTT +++ L ++K A +G+ Sbjct: 87 IPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTITQIIAQWLGLVEKRAAVLGT 146 Query: 143 YNN---------------HIGVPLTLARMPVD-VDFGIFELGMSHL--GEIRFLTHLVRP 184 N I + TLA + D+ E+ L G ++ L V Sbjct: 147 AGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSHGLVQGRVKTLPFAV-- 204 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +V T ++ HL +EE AK +F KT +N DD Sbjct: 205 --SVFTNLSRDHLDYHGTMEEYEQAKLTLFTE-HKTAHAVINVDD 246 >gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelagibaca bermudensis HTCC2601] gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. HTCC2601] Length = 494 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 161/385 (41%), Gaps = 59/385 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS+DSR++ P F A+ G G FI A+ +GA V V TD A L+ Sbjct: 23 VTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGA--VAVLTD--AEGARLAEAAL 78 Query: 87 GVDDVLGALNKLAVAARLRS-------------KATIIAITGSVGKTTTKEMLTIALSSI 133 DV L +AA R+ AT++A+TG+ GKT+ S + Sbjct: 79 AESDV-----ALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVA-------SFV 126 Query: 134 KKTYACIGSYNNHIGV-----------------PLTLARMPVDV-DFGIFELGM---SHL 172 ++ + +G ++G P+TL + + G+ M SH Sbjct: 127 RRLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHG 186 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF 231 + R L V+ A T HL + EE +AKA +F L + GT +N DD+ Sbjct: 187 LDQRRLDG-VQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDAR 245 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A + A G + + + G+S+ AD +L + + + + G ++ + IG Sbjct: 246 GIDMLAIARARG-QEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGF 304 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 QN L+ G+V A+ + +AL GR + + G +D Y P Sbjct: 305 QGQNALVAAGLVIACGAEAEDVFRALPRLETVHGR-MQLAATRDSGAAVYVD--YAHTPD 361 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ AI L PH GR IA++G Sbjct: 362 AVATAIKAL---RPHVMGRLIAIVG 383 >gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] Length = 495 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 148/367 (40%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ AF IKG DGH++I A+Q GA L+VV+ S I Sbjct: 33 ITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGARLIVVDEFFDTSKIKGKIDYI 92 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ A +I +TG+ GKT+T M+ L + + IG+ Sbjct: 93 KTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 152 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 153 NMIGSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVVMEVSSHSLEL-FRVYASDFDVGVF 211 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E SAK ++F G+ K I N DDS+ K + Sbjct: 212 TNLTQDHLDFHGTMENYFSAKLKLF-GMSKKRVI--NADDSW-----GKRIIEMYPDCMT 263 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K NA R K ++ ++ K E++ + G N L +L + Sbjct: 264 YAKDSNATVCARNIKLYVNKNQFDLWYNDKKEEILLNIPGLFSIYNSLAAAACCILLGIE 323 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +DT K L GR + N+ F +ID Y P + ++++ ++ +G Sbjct: 324 LDTIKKGLEELKAVPGRFEIVES--NEKFTVVID--YAHTPDGL---LNLMRTVNEVADG 376 Query: 370 RRIAVLG 376 R++ + G Sbjct: 377 RKVLLFG 383 >gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15] Length = 485 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 157/377 (41%), Gaps = 46/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82 ++G+ DSR +A +AF A+ G ++ A+ GA ++++ G+L Sbjct: 15 IHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQQAGECTEHHGALI 74 Query: 83 IPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV G+ ++G + + RLR +I +TG+ GKT+ + + L Sbjct: 75 VPVAGLRSLVGRIADRFFEHPSQRLR----LIGVTGTNGKTSVCQYVAQLLKETGTPCGI 130 Query: 140 IGSYN---------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183 +G+ + + V L+R+ + + E+ L + R + Sbjct: 131 LGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSMT 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF----FELLKAKS 239 AV T + HL +E +AKA++F+ E ++ +N+DD F FE L K Sbjct: 191 G--AVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSV-INFDDPFGRQLFEQLDGKC 247 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + YS +++ + LR+++ E EV + V +G A N+L Sbjct: 248 D----RVRYSLHEAQT-ELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAA 302 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + V L ++ +A+ P GR +R+ A G ++D Y P ++ A++ Sbjct: 303 MATVLTLGVPIERVQQAVGRLTPPPGRLERFVGA--NGVRVVVD--YAHTPDALANALTA 358 Query: 360 LSQISPHGEGRRIAVLG 376 L PH G + V G Sbjct: 359 L---RPHVTGELVCVFG 372 >gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] Length = 551 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 88/376 (23%), Positives = 153/376 (40%), Gaps = 47/376 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + N +++DSR P+ F A G + G F+ A+ +GA V V T V + + +P Sbjct: 29 YFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGA--VGVVTSQV--LPNCPLPQ 84 Query: 86 FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V + A L+ A+RLR ++ +TG+ GKTT M ++ Sbjct: 85 CVVANPRAAYAYLSQSLYGHPASRLR----MMGVTGTNGKTTVSWMTRALMAKSGYRTGL 140 Query: 140 IGS---YNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRP-------- 184 +G+ ++ + P L A++ + G +HL + +H + Sbjct: 141 LGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLA-MELSSHSLDQSRAAALPL 199 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSH 240 A++T I HL AKA I + ++ GTI L+ +D S L+ A+ Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAASLASLVPAECR 259 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +G + +A+ + + + VQ QG+ M++ +G H +N L L Sbjct: 260 ------LIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAAL 313 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +AL F P GR + RC + F +D Y P ++ A+ L Sbjct: 314 AAGLAWKVPFLSMAEALEEFRPVPGRME--RCTWGEPFDIFVD--YAHTPDALSRALCSL 369 Query: 361 SQISPHGEGRRIAVLG 376 ++ GR I V G Sbjct: 370 RGLT---RGRLICVFG 382 >gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 38/379 (10%) Query: 21 IVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I P F + G++ DSR +A + FFA+ G DG + AV++GA + V T+ A Sbjct: 12 IEPPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYAPEAVRRGA--LAVVTEQSA 69 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 S+ + + V DV AL + R T++A+TG+ GKT+ +S+ Sbjct: 70 SVPFETAALVKVADVRSALAIASARFYARQPETVVAVTGTSGKTSVAAFARQIWASLGFK 129 Query: 137 YACIGSYN-------NHIGV----PLTLARMPVDVDFGIFELGMSHL-------GEIRFL 178 A +G+ ++ G+ P++L R +D G G++HL G + Sbjct: 130 AASVGTLGVVAPDGASYGGLTTPDPISLHRT-LDELAGA---GVTHLALEASSHGLDQHR 185 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKA 237 VR A T ++ HL +E AK +F L GT+ ++ D S + Sbjct: 186 LDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVLPADGTVVVDADSSAGHEVID 245 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A G+K ++S G + L + + + + + + GK + +G A N L Sbjct: 246 VAKARGLK-VFSLGFAGET-LHLLEARPEAAATLLRLTFAGKDWALRLPLVGSFQAANAL 303 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 M G+ A D AL GR + + +G +D Y P +++ A+ Sbjct: 304 MAAGLCISTGAAPDAVFAALERLEGAPGRLE--KVGERRGASIFVD--YAHKPDALEKAL 359 Query: 358 SVLSQISPHGEGRRIAVLG 376 L P + R I + G Sbjct: 360 QAL---RPFTQKRLIVIFG 375 >gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 513 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 37/282 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S I P F AIKG DGH +I A+ GA L++ +++ +L +P Sbjct: 50 VKGITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGAILIIGENELM----NLEVPYL 105 Query: 87 GVDDVLGALNKLA-VAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL ++A + + SK I I ITG+ GKTT + L + + IG+ + Sbjct: 106 KVKSARKALGQVAKLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSSIGTIH 165 Query: 145 NHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 N I P T+ ++ V + + +S G + ++ A+ + Sbjct: 166 NEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYALFNNLQ 225 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL + +EE KA +F+ L+ GT +N DDS+ G+K I Sbjct: 226 HDHLDYHNTMEEYFECKALLFQKLKPNGTAIINSDDSW-----------GLKLI------ 268 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHM 292 ++ + +K EQS+ VQ+ K + V+H + Y + Sbjct: 269 EHLTAEGKKILTVGEQSFSNVQILSKELNDVSVMHKNMEYSL 310 >gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila psittaci RD1] gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] Length = 483 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 103/459 (22%), Positives = 178/459 (38%), Gaps = 66/459 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + G + V ++ DSR++ + F A KG H DG+DF A++ G Sbjct: 1 MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFSHLAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLA--VAARL----RSKATIIAITGSV 117 A +A S+ P V ++ + L +L +AA+ K ++ ITG+ Sbjct: 61 A---------IAVASSIYNPFLPVVQIISSDLPQLEADLAAKYYGHPSQKLCVVGITGTN 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLT------LARM-PVDVD 161 GKTT ++ + K IG+ + +G P + LA M ++ Sbjct: 112 GKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEMVKSNLS 171 Query: 162 FGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + E L ++ L + F + V+T I HL S EE AK ++F Sbjct: 172 AAVMEVSSIGLAVNRLANVHF-------DVGVLTNITLDHLDFHSSFEEYKQAKLKLFSM 224 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L +G +N D + + A I ++G ++AD++ + + ++ Sbjct: 225 LPSSGLAVVNNDLHYAAQFIEATQAQPI----TYGIEQHADYRASNLRFSPFGTDFDLLY 280 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +G++ IG H N+L + + L D+ I A++ G R + Sbjct: 281 KGETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRG---RLEPVFS 337 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ID Y P ++ L + P +GR I V G C G+ QS +A+V Sbjct: 338 GPCPIYID--YAHTPDALDNVCKTLQALLPQ-DGRLIVVFG--CG-GDRDQSKRKIMAQV 391 Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 + Y GF V+ + + +E G F Sbjct: 392 VEKY--------GFAVVTTDNPRGEDPEMIINEICSGFF 422 >gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 476 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 28/281 (9%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163 R +IAIT S GKT+ K L LS Y S N G+ + +P D Sbjct: 152 RPSMKVIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPDTCDIY 211 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 I E G G+I + V PHIAV+ I H+ F +E I + K E+ + Sbjct: 212 IVEAGARMQGDIDEIARCVNPHIAVVGRIGEQHIEYFKTLENIRNTKMEMIHS-NRLQKA 270 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 F++ E TI SFG ++++ K + + L+GK Sbjct: 271 FIHESAQIKE----------TPTILSFGS------EIKEVKASLDGLTFSMLLEGKEEHF 314 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLI 342 +G A N+ + + L ++ +A+ +E +G +R + G +I Sbjct: 315 SASLLGDFNAINLAACVHVARELGMSIEMIQEAM-----RELKGVEHRLQKIEAGGKIII 369 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 D+S+N N M ++ ++S H EGR++ V + E E Sbjct: 370 DDSFNGNLEGMLSSYELVS----HYEGRKVIVTPGIVESTE 406 >gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus NA1000] gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Caulobacter crescentus NA1000] Length = 486 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 149/375 (39%), Gaps = 40/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+ G DG DF AV KGA ++ + +G +PV Sbjct: 19 IAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEGGLEGLG---VPVV 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 +D A A A + A +A+TG+ GKT+ + + A +G+ Sbjct: 76 RSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMGTLGVV 135 Query: 145 -NHIGVPLTLARMP--VDVDFG--------IFELGMSHL-------GEIRFLTHLVRPHI 186 + G P P D G + ++G++HL G + V+ Sbjct: 136 VSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDGVKLSA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIK 245 A T HL +E +AK +F+ L G + LN D F A + G + Sbjct: 196 AGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAVTSG-Q 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLG 301 +++S G+ L + + Q + V+ +G VVHH G A N+L+ G Sbjct: 255 SVFSVGEEGQGLRLLSRTPTPAGQDLV-VEAEG----VVHHLKLPLAGAFQASNVLVAAG 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D +KAL GR +R +G +D Y P ++ +VL Sbjct: 310 LCIAAGEDSAKVLKALETLEGAAGRLQRVGRG-PKGGEAYVD--YAHTPDGLQ---TVLE 363 Query: 362 QISPHGEGRRIAVLG 376 + PH G+ IAV G Sbjct: 364 ALRPHTAGKLIAVFG 378 >gi|317009250|gb|ADU79830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Helicobacter pylori India7] Length = 493 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213 Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + + + + I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE Sbjct: 214 NQNLDNNSEIYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|227513548|ref|ZP_03943597.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227083421|gb|EEI18733.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC 11577] Length = 443 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 38/283 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I ++G+ GKT+T +L+ LS I T IG + GVP + F ++E Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R +P A++T I H + I+++ A + F K G IF D Sbjct: 156 -----EYRRHFLATKPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D LKAK IY +G + DFQ K+ ++ S V+ +GK + E Sbjct: 209 DKRLRKLKAKI------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + D++ + L F +G +R+ G T+ID+ Y Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380 +P +KA I Q PH R IA++ D + Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360 >gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] Length = 508 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 85/391 (21%), Positives = 157/391 (40%), Gaps = 66/391 (16%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSIPV 85 G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ ++V + D+ + + + + Sbjct: 30 GVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSRDLDFYSSDVTYIKVDD 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSY 143 F + + + + + K +I +TG+ GK++ + + L +K + + Sbjct: 90 FNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFF 148 Query: 144 NNHIGVPLTLARMPV--------------------DVDFGIFELGMSH---LGEIRFLTH 180 ++ G +L + P +V + I E SH L R + Sbjct: 149 DDGSG---SLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAILE-STSHGLDLETARLID- 203 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239 V AV T I HL I+ + K +F + + G +N DD + K Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSSDFK--- 259 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +A+ YS KS ADF + S+++ + E H G+ Y N+L + Sbjct: 260 NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFEFYHKGVKYFANVNLLGS 309 Query: 300 LGIVSILTA----------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + +++ A D+ + L+ +GR L Q F +ID Y Sbjct: 310 FNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSIN--LGQNFSVIID--YAHT 365 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P + + + + + R I+V G E Sbjct: 366 PGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 478 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 141/372 (37%), Gaps = 43/372 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN +S I + F +G +DGH + AV +GA V+ N + + IPV Sbjct: 18 VNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPL-----DIDIPVI 72 Query: 87 GVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D +L + A K I +TG+ GKTT L L+ T A IG+ Sbjct: 73 MTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQT-TTSAYIGT--- 128 Query: 146 HIGVPLTLARMPV--------------------DVDFGIFELGMSHLGEIRFLTHLVRPH 185 +G L + P+ + +F + EL L + R V Sbjct: 129 -LGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDR--AGFVSLQ 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I +IT I HL + AK ++ + + GT +N DD A A G Sbjct: 186 IGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDP--HAAAAIERASGRV 243 Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG ++ A + S E+++ G+ +V +N L + Sbjct: 244 NVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLL 303 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L AL +GR + +LN G L+D ++NA+ S +L + Sbjct: 304 SLGWQSSRIAAALQTIVAPDGRAQFL--SLNNGATGLVDYAHNADGLS-----KLLEDVR 356 Query: 365 PHGEGRRIAVLG 376 P+ +GR I V G Sbjct: 357 PYTKGRLIVVTG 368 >gi|254779283|ref|YP_003057388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; putative membrane protein [Helicobacter pylori B38] gi|254001194|emb|CAX29160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; putative membrane protein [Helicobacter pylori B38] Length = 493 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE Sbjct: 214 NQNLDDKSEIYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKHLEK 282 >gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] Length = 486 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 167/427 (39%), Gaps = 64/427 (14%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ I G V V ++ DSR + F A +G +G+D+ AV+ GA Sbjct: 9 LLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGA---- 64 Query: 70 VNTDMVASIGSLSIPVFGVDDV----LGALNKLAVAARLRSKAT----IIAITGSVGKTT 121 +A + SL P V + L AL + +AAR + + +I +TG+ GKTT Sbjct: 65 -----IAILSSLYNPFLSVVQIVTEDLTAL-EACLAARFYNDPSKRLDVIGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------------VPLTLARMPV 158 + + + +G+ + +G V L+ V Sbjct: 119 VSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVV 178 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 +V +G++ LG +R L V+T ++ HL EE AK ++F L Sbjct: 179 EVS----SIGLA-LGRVRETEFLA----GVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLP 229 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + G +N D + + S A G+ S+ + AD++ K S S ++ QG Sbjct: 230 EHGVAVVNSDCEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQG 285 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 +G H N+L L +V IL D + + +G R L+ Sbjct: 286 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKG---RLEPVLSGP 342 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ID Y P ++ +LSQ+ P +GR I V G C G+ S +A+V Sbjct: 343 CPIYID--YAHTPDALDNVCKILSQLLP-ADGRLIIVFG--CG-GDRDHSKRPIMAKVAE 396 Query: 398 LYNISHV 404 Y S V Sbjct: 397 TYGFSVV 403 >gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 491 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 106/412 (25%), Positives = 179/412 (43%), Gaps = 46/412 (11%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G + + + +S DSR I FF + G +DGH F A +KGA +V + + Sbjct: 19 GTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAEEKGAVCLVASKHV----- 73 Query: 80 SLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + IPV V+DV+ + LA+ ++I +TG+ GKTTT ++ KK+ Sbjct: 74 DVKIPVVYVEDVIKTMAFLAMRFYHDPSGSMSLIGVTGTNGKTTTTHIIRHLFEKNKKSC 133 Query: 138 ACIGS-----YNNHIGVPLT----------LARMPVDVDFGIFELGMSH---LGEIRFLT 179 IG+ + HI P T LA+M + F SH +G ++ Sbjct: 134 GMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAKMKEEGVFICTSEVSSHALVMGRVQN-- 191 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTI-FLNYDDSFFELLK 236 V ++AV T + HL + E AK+ +F G G I LN DD++ +++ Sbjct: 192 --VDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQLGSGNNGKIAILNKDDTYAKVIA 249 Query: 237 AKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ +A TI+ + K +A+F + + ++ + QG V+ IG QN Sbjct: 250 SRCNA----TIWYYSTKDPSAEFYAKDMVYLASKTEFTLVFQGLEYPVISPLIGEFNVQN 305 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L L ++ I+ALS F EGR + L G ++D + P ++ Sbjct: 306 ALAALAAYYALERHLEKGIEALSSFSGVEGRMQTIENDL--GIHAIVD--FAHTPDGLEK 361 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A++ L +++ R I ++G + G S DL + Y+ V+ S Sbjct: 362 AMAALKKLN---HKRIITMIGH--DGGNRDNSIRQDLGRIALEYSDYVVFTS 408 >gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] Length = 486 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 84/342 (24%), Positives = 139/342 (40%), Gaps = 32/342 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + +I V G+ DSR++ + A KG DGHDFI HA+ Sbjct: 1 MKTLQDILYGVSIEAIVGATTIPVKGVVFDSRNVKIDFVYVAQKGVQVDGHDFISHAISN 60 Query: 64 GAGLVV---VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++V + + VA G + V LG L R K T++ +TG+ GKT Sbjct: 61 GAKVIVCEFIPAECVA--GVAYVKVENSSKTLGVLASNFYDNPSR-KLTLVGVTGTNGKT 117 Query: 121 TTKEMLTIALSSIKKTYAC--------IGSYNNHIGVPLTLARMPVDVDF-GIFELGMSH 171 T +L SS + YAC I N + T + ++ + E G++H Sbjct: 118 TIASLLYALFSS--EGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVESGVTH 175 Query: 172 L-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 G + + ++ + + + HL + K + F+ L KT Sbjct: 176 CFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSLPKTAFAL 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD + + + Y++ ++ADF+ Q E + + L+ +S EV Sbjct: 236 TNVDDKNGTYMLQNT----VAKKYTYAIKQHADFK----AQILECQFSGMLLKIQSQEVW 287 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 IG AQN+L + S+L + +K +S GR Sbjct: 288 TSLIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGR 329 >gi|210134942|ref|YP_002301381.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12] gi|210132910|gb|ACJ07901.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12] Length = 493 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE Sbjct: 214 NQNLDDKSEVYIAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens SBW25] gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate ligase [Pseudomonas fluorescens SBW25] Length = 487 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 56/382 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G YDG I A+Q+GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAVAYEVEGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAKQLSD--IAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180 + N I V TLA + V ++ L + + F Sbjct: 135 TLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV+T ++ HL +E A+AKA++F +N DD+F L A+ Sbjct: 192 ----DVAVMTNLSRDHLDYHGTMEAYAAAKAKLF-AWNDLKCRVVNLDDAFGRQLAAEDS 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH----GIGYHMAQ 294 + S+ ++ + + Q +++ V QG+ HH +G Sbjct: 247 E---ARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGE-----HHLRSTLLGRFNLS 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L +G + L +D ++ L GR +R L G L+ Y P +++ Sbjct: 299 NVLAAIGALLGLDYALDEILRVLPKLEGPAGRMQR----LGGGKQPLVVVDYAHTPDALE 354 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 VL + PH +G+ + + G Sbjct: 355 ---KVLEALRPHAKGKLLCLFG 373 >gi|228475935|ref|ZP_04060644.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119] gi|228270006|gb|EEK11480.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis SK119] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 133/307 (43%), Gaps = 50/307 (16%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 101 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 151 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ASA E+ ++K I Sbjct: 152 E-----ACEYRRHFLSY--HPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AI 202 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD LKA IY +G SKN D + + +V + G+ + Sbjct: 203 IAWGDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQ 256 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-- 340 + G H QN L + I + DV+ +AL F G KR N+ F + Sbjct: 257 FLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETF----GGVKR---RFNETFVSKQ 309 Query: 341 -LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L+D+ Y +P + A I V++ PH R A L + + LS++ H Sbjct: 310 VLVDD-YAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADA--LSKADH 366 Query: 390 IDLAEVL 396 + L E+ Sbjct: 367 VFLCEIF 373 >gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 134 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 19/125 (15%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++P V Sbjct: 23 GVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----ALPQLVV 78 Query: 89 DDV------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D LGA+N+ A R + A+TGS GKTT KEM L+SI +T + + Sbjct: 79 LDTRKALAQLGAMNRNAFVDR-----PVAAVTGSSGKTTVKEM----LASILRTRGPVLA 129 Query: 143 YNNHI 147 H+ Sbjct: 130 TRGHL 134 >gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4] gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688] gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4] gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688] Length = 465 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 152/368 (41%), Gaps = 44/368 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + + T+ IG L A + G F + Sbjct: 108 IAVAGTHGKTTTTSLIASILAEAGMDPTFV--------IGGRLEAASANARLGTGEFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P I+V+T I H+ + E++ A E + L G L Sbjct: 160 EADESDASFL-HL-SPVISVVTNIDADHMDTYGHDFEKLKGAFVEFLQQLPFWGMAVLCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSME--VV 284 DD + K I +G S++A + + + + VQ + G + E V Sbjct: 218 DDPNIRAILPSV----TKPIMPYGFSEDARIRGKNVRADNGTMHFTVQRINGVTTEFDVT 273 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFF 339 + G H N L + + S L IKAL F +G G+R+ A N G F Sbjct: 274 LNLPGNHYVLNALAAIAVASELNVPDAAIIKALREF---KGVGRRFERYGEVPARNGGQF 330 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 TLID+ Y +P M+A I+ P GRR+ + F D +VLS Sbjct: 331 TLIDD-YGHHPVEMQAVIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLSSA 385 Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 + +S V+ +G + D AL R+I V + ET L I DGDVV+ Sbjct: 386 DAVLLSDVYPAGEAPIVAADGRALVRAIRVAGKVEPLFVETTAELPEAILGVAQDGDVVI 445 Query: 449 VKSSNSCG 456 V + S G Sbjct: 446 VMGAGSIG 453 >gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 508 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 101/383 (26%), Positives = 158/383 (41%), Gaps = 47/383 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS D+R + P F A+ G H DG FI +A++KGA VVV L +PV Sbjct: 29 VTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGAKAVVVEGSYQP---DLQVPVI 85 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 VD+ A ++LA K +I +TG+ GKTTT M++ L S + I + Sbjct: 86 IVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTTTYMISSMLESADASTGFITTVD 145 Query: 143 ---------YNNHIGVPLT------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + H P L RM V++ + E SH ++ L + + Sbjct: 146 YKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAVIE-SSSHGLKLHRLEDVAY-DV 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE--------GLEKTGTIFLNYDDSFFELLKAK 238 AV T + HL +E+ KA +F+ G K G I N DD +L Sbjct: 204 AVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCGKWGVI--NLDDPNAQLYIDS 261 Query: 239 SHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++++ + +NAD ++ E V +G S E+ G + N L Sbjct: 262 TKG----KVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEINLPISGDYNVYNAL 317 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +G+ +D AL F GR + ++ Q F +ID ++ + S++ + Sbjct: 318 AAIGVAITQNIPIDVCKSALERFTGVPGRMQ--VISMGQPFTVVIDYAHTED--SLEKVL 373 Query: 358 SVLSQISPHGEGRRIAVLGDMCE 380 L Q + GR AV G E Sbjct: 374 ITLKQRT---RGRLFAVFGSAGE 393 >gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7] Length = 493 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIASDI 213 Query: 154 ARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE Sbjct: 214 NQNLEDSSEIYIAEAGARNKGDIKDITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG 216 + + Sbjct: 274 LLDS 277 >gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128] gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Helicobacter pylori B8] gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128] gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Helicobacter pylori B8] Length = 493 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +THL+ PH+ V+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITHLIEPHLVVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori] Length = 493 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168 +IAITGS GKT+TK+ L L + +A S N +G+ + + D + I E G Sbjct: 170 VIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEIYIAEAG 229 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 + G+I+ +T L+ PH+AVI + HL F +E I KAE+ + LEK Sbjct: 230 ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282 >gi|314936164|ref|ZP_07843511.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313654783|gb|EFS18528.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 437 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 133/307 (43%), Gaps = 50/307 (16%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ASA E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDYDHPDYFKNIDDVASAFQEMANNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282 DD LKA IY +G SKN D + + +V + G+ + Sbjct: 201 IAWGDDEHLRNLKADV------PIYYYGLSKNDDVYADNIQITENGTQFDVYINGEYYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-- 340 + G H QN L + I + DV+ +AL F G KR N+ F + Sbjct: 255 FLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETF----GGVKR---RFNETFVSKQ 307 Query: 341 -LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L+D+ Y +P + A I V++ PH R A L + + LS++ H Sbjct: 308 VLVDD-YAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADA--LSKADH 364 Query: 390 IDLAEVL 396 + L E+ Sbjct: 365 VFLCEIF 371 >gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM 13479] gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM 13479] Length = 463 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 80/360 (22%), Positives = 159/360 (44%), Gaps = 37/360 (10%) Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 +++ +A++G+ GKTTT M+T I L++ +G N IG ++ Sbjct: 111 MKNYENAVAVSGTHGKTTTTSMITEILLAADADPTISVGGILNSIG---------GNIRV 161 Query: 163 GIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 G EL ++ E FL+ P I VI + HL F +++I + E L K Sbjct: 162 GGPELFVTEACEYTNSFLSFF--PTIEVILNVEADHLDFFKDLDDIRRSFRLFAEKLPKD 219 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK 279 G + +N D + +E + + L + I +FGK +++ ++ + + + ++ + G+ Sbjct: 220 GILVINSDITDYEKI---TEGLPCRVI-TFGKEESSKYRAEQIRFDELARPVFDLSVDGE 275 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +++ V G+ G H N L + + L ++ K L F G +R+ G Sbjct: 276 TVDTVALGVPGEHNVYNSLAAIAVCMELGISLEMIKKGLWKF---TGTNRRFEKKGELGG 332 Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID+ Y +P + A+++ PH R A L + E LS + Sbjct: 333 ITIIDD-YAHHPQEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAEA--LSMADE 389 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + LA++ + ++ +S ++ +A + + HY + D + FI + + GD+++ Sbjct: 390 VILADIYAARETDNLGISSKDIVDRIEA--KGVKAHYIPSFDEIETFILENCIHGDLLIT 447 >gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72] gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72] Length = 467 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 164/382 (42%), Gaps = 48/382 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155 LA RL+S IAI G+ GKTTT ++ +A ++ T+ IG N G L + Sbjct: 98 LAELMRLKSG---IAIAGTHGKTTTTSLVASILAEGAMDPTF-VIGGRLNAAGANARLGK 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL ++ P I+V+T I H+ + + A + Sbjct: 154 -------GDFLVAEADESDASFL--MLSPVISVVTNIDADHMDTYGHDFARLKQAFVDFL 204 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + L G L DD + L K + +G S+ A+ + + + +V Sbjct: 205 QRLPFYGVAVLCEDDPHVRSIMP----LVSKQVVRYGLSETANIRAENIRAEGGRMIFDV 260 Query: 275 -QLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 ++ G + +VV + G H +N L + + + + + +KAL+ F G G+R+ Sbjct: 261 LRVNGSTTRLADVVLNLPGLHNVRNALAAIAVATEVQVPDEAIVKALAEF---SGVGRRF 317 Query: 331 R-----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + A + G FTLID+ Y +P M+A ++ P GRR+ + Sbjct: 318 QRYGEVAAPSGGTFTLIDD-YGHHPVEMEATLAAARGAFP---GRRLVLAFQPHRYTRTR 373 Query: 386 QSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLF 434 F D +VLS + ++ V+ +G + D AL R++ V + E + G+ Sbjct: 374 DCFE-DFVKVLSTVDALLLAEVYAAGEAPIVAADGRALSRALRVAGKVEPVFVEDIGGMP 432 Query: 435 LFIQSSLVDGDVVVVKSSNSCG 456 + ++ DGDVV+ + S G Sbjct: 433 QAVLEAVRDGDVVITMGAGSIG 454 >gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii ATCC 27126] Length = 521 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 37/238 (15%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + G+++DSR + + AF AIKG DG DFI A+ GA +++ T+ ++ G + Sbjct: 22 PDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTEDSSAHGQME 81 Query: 83 -------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 I ++ + +L AL A K T +A+TG+ GKT+T ++LT ++ Sbjct: 82 MRDHSVIISLYELPQMLSAL-AAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQLKDALGT 140 Query: 136 TYACIGSYNNHI--GVPLTLARMPV--------------------DVDFGIFELGMSHLG 173 A IG+ + + G + P +V FE L Sbjct: 141 RSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRHTAFEASSHALV 200 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD 229 + R T V+ IAV T + HL +EE AK + + GL+ + LN +D Sbjct: 201 QGRLGT--VKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLK---AVVLNVND 253 >gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPKX_438_AG0C1] Length = 467 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168 +IAITGS GKT+TK L L + +A S N +G+ + + + + I E G Sbjct: 144 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEIYIAEAG 203 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 + G+I+ +T L+ PH+AVI + HL F +E I KAE+ + LEK Sbjct: 204 ARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 256 >gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Weiss] gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum MopnTet14] gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 483 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 167/427 (39%), Gaps = 64/427 (14%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ I G V V ++ DSR + F A +G +G+D+ AV+ GA Sbjct: 6 LLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGA---- 61 Query: 70 VNTDMVASIGSLSIPVFGVDDV----LGALNKLAVAARLRSKAT----IIAITGSVGKTT 121 +A + SL P V + L AL + +AAR + + +I +TG+ GKTT Sbjct: 62 -----IAILSSLYNPFLSVVQIVTEDLTAL-EACLAARFYNDPSKRLDVIGVTGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG-----------------------VPLTLARMPV 158 + + + +G+ + +G V L+ V Sbjct: 116 VSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVV 175 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 +V +G++ LG +R L V+T ++ HL EE AK ++F L Sbjct: 176 EVS----SIGLA-LGRVRETEFLA----GVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLP 226 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + G +N D + + S A G+ S+ + AD++ K S S ++ QG Sbjct: 227 EHGVAVVNSDCEYAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQG 282 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 +G H N+L L +V IL D + + +G R L+ Sbjct: 283 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKG---RLEPVLSGP 339 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ID Y P ++ +LSQ+ P +GR I V G C G+ S +A+V Sbjct: 340 CPIYID--YAHTPDALDNVCKILSQLLP-ADGRLIIVFG--CG-GDRDHSKRPIMAKVAE 393 Query: 398 LYNISHV 404 Y S V Sbjct: 394 TYGFSVV 400 >gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] Length = 485 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 38/324 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPV 85 V I DSR + FF + G DGH +I AV +GA +V + + G L I Sbjct: 10 VVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHRGVLYIK- 68 Query: 86 FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V++VL LN++A K T+I +TGS GKT M+ LS K IG+ Sbjct: 69 --VNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKM-GYIGT- 124 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLG-----EIRFLTHLVRPH------------- 185 N+I + + P IF HL +++ +T V H Sbjct: 125 -NNIEYAGVIEQCPYTTPETIF--MQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVHFD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKA--KSHAL 242 IA+ T + HL +E + ++KA++F +++ G LN D+ F+ L+K + H L Sbjct: 182 IAIFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAILNTDEVRFYNLVKDSIRCHLL 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++G A R + + S ++Q+ V +G N+L + Sbjct: 242 ------TYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITS 295 Query: 303 VSILTADVDTAIKALSVFHPKEGR 326 + L +D ++++ +GR Sbjct: 296 MLALEMPMDQVLESVGYIRGVDGR 319 >gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 537 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 23/235 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF A GA V+ + + +PV Sbjct: 37 VTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAVAVLTDPAGAERAAATGLPVL 96 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKK----TYACI 140 VD+ G + LA A + I ITG+ GKTTT ++ L + K I Sbjct: 97 AVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTTAYLIEGGLKAAAKHDGGLTGLI 156 Query: 141 GSYNNHIGVPLTLAR--MPVDVD----FGIFELGMSHLGEIRFLTH---LVRP-----HI 186 G+ IG + P D F + H + +H L R + Sbjct: 157 GTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHSVVMEVSSHALVLGRVDGCVFDV 216 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240 AV ++P H+ SG+E+ AKA++F + + G I NYDD + L +S Sbjct: 217 AVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGVI--NYDDEYGRRLIEQSE 269 >gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212] gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212] Length = 475 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 109/431 (25%), Positives = 189/431 (43%), Gaps = 60/431 (13%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 ++ HA ++ GA +VV +T + V + + +IPV V AL LA RLR Sbjct: 54 YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPV-----VPRAL-MLAELLRLR-- 105 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 T IAI G+ GKTTT ++ +A + + T+ IG L A + G F Sbjct: 106 -TGIAIAGAHGKTTTTSLIASILAAADMDPTFV--------IGGKLEAAGCHAKLGSGEF 156 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 + + + FL ++P +AV+T I H+ + ++ E + L G Sbjct: 157 IVVEADESDASFL--YLQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQHLPFYGMAV 214 Query: 225 LNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGK 279 + DD+ E++ A + K+I ++G S++A + + + Q + + V + Sbjct: 215 VCIDDANIREVMPAIT-----KSITTYGLSEDAQVRATNIQHSNHQMKFTAVIGVNGSAR 269 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 +++ + G H QN L + + + + ++AL+ F E R +++ R ++ Q Sbjct: 270 RLDITLNLPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSM-Q 328 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 FTLID+ Y +PA M+A + P GRR+ V F D VL Sbjct: 329 KSFTLIDD-YGHHPAEMEATMKAARGAFP---GRRLVVAFQPHRYTRTRDVFE-DFTRVL 383 Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 S ++ + V+ +G + D +L RSI V Y E +D L + I + D D Sbjct: 384 SQADVLLLTEVYPAGEDPIVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAILDVVQDND 443 Query: 446 VVVVKSSNSCG 456 +V+V + S Sbjct: 444 IVLVMGAGSVA 454 >gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] Length = 472 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 27/248 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F ++L+ + G++P+ + G S DSR I AF +KG DG +I A+ KGA Sbjct: 7 FLEMLEELNPRLSGVLPE-LIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEALAKGAR 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 L++ + ++IP +DD+ A LA A + IIA+TG+ GK++T Sbjct: 66 LLLCEEFL-----DVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNGKSSTAY 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELG 168 ++ L+ + K+ A IG+ +G + + + ++ + E Sbjct: 121 IIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEYVVLEAS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 L + R + + + T ++ HL +E SAK +F+ + I +N D Sbjct: 181 SHGLDQQRL--YGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSKIKI-VNSD 237 Query: 229 DSFFELLK 236 D++ + L+ Sbjct: 238 DAYGKRLR 245 >gi|108563149|ref|YP_627465.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1] gi|107836922|gb|ABF84791.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1] Length = 493 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168 +IAITGS GKT+TK L L + +A S N +G+ + + D + I E G Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEIYIAEAG 229 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 + G+I+ +T L+ PH+AV+ + HL F +E I KAE+ + LEK Sbjct: 230 ARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282 >gi|227510539|ref|ZP_03940588.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190191|gb|EEI70258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 443 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 38/283 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I ++G+ GKT+T +L+ LS I T IG + GVP + F ++E Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R P A++T I H + I+++ A + F K G IF D Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D LKAK IY +G + DFQ K+ ++ S V+ +GK + E Sbjct: 209 DKRLRQLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + D++ + L F +G +R+ G T+ID+ Y Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380 +P +KA I Q PH R IA++ D + Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360 >gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer RA-YM] gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer RA-GD] Length = 486 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 148/373 (39%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR + + AIKG DGH FI AV+KGA ++V+ + + I +I Sbjct: 23 VSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAKVIVL--EDLPEILDETITYI 80 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V ++ L +LA K ++ +TG+ GKT+ +L ++ A I + Sbjct: 81 KVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVSTLLFDVFKNLGYPSALISTVE 140 Query: 145 NHIG---VPLT------------LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P T LA+ + ++ E+ + + R T + +A Sbjct: 141 YRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQNR--TEGLHFKVAG 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGI 244 T I HL E + K F+ L + N DD + KAK + Sbjct: 199 FTNITHDHLDYHKTFLEYLNTKKSFFDNLPDSAVAITNLDDKNGLVMLQNTKAKKKTYAL 258 Query: 245 KTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 KT+ + G+ DF + M + GK EV G N+L+ GI Sbjct: 259 KTLSDYHGRLLEVDF-----------NGMLLNFNGK--EVWTSLTGKFNVYNLLLVFGIA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D + A+S GR + + G F ++D Y P +++ + +++I Sbjct: 306 RELGFDEVEILTAISQLKRVNGRFETIKS--EGGIFFVVD--YAHTPDALENILDSINEI 361 Query: 364 SPHGEGRRIAVLG 376 E R I+V G Sbjct: 362 RTKNE-RLISVFG 373 >gi|208434651|ref|YP_002266317.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27] gi|208432580|gb|ACI27451.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27] Length = 470 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 135 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDI 190 Query: 154 AR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + + + + I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE Sbjct: 191 NQNLDNNSEIYIAEAGARNKGDIKEITLLIEPHLAVIAEVGEQHLEYFKTLENICETKAE 250 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 251 LLDSKRLEK 259 >gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 484 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 42/373 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLSIPVFG 87 + DSR + P + F A+ G DG FI A + GAG++V D A+ + V Sbjct: 19 VRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVCRADSEEAAAAATAGCRVVH 78 Query: 88 VDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 D AL +LA AR + I+ +TG+ GKTT +L + +G+ Sbjct: 79 HADPREALWRLA-QARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGTVS 137 Query: 143 --YNNHI-GVPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + H+ PLT LA M D VD + E+ + + R V A Sbjct: 138 YRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCG--VPFSGAA 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247 T ++ HL +E AKA +F L + ++ +N DD++ L T Sbjct: 196 FTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLEL-----CPTA 250 Query: 248 YSFGKSKNADFQLRKWKQ----CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 SFG K A + W + + + + L+ E+ +G A N+L + Sbjct: 251 LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVA 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D + A KAL F GR +R QG +D Y P +++ +VL + Sbjct: 311 LEMGIDPE-AFKALESFTGVSGRLERVENP--QGLNVFVD--YAHTPDALE---NVLKAL 362 Query: 364 SPHGEGRRIAVLG 376 G R I V G Sbjct: 363 RDAGFERVITVFG 375 >gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] Length = 482 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 66/405 (16%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 TF +L++ I+ + ++ + VN G+ IDSR + F AIKG DGH +I A++ Sbjct: 1 MTFSELIKGIK--TSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIE 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKAT----IIAITGSV 117 GA ++ +++ V +D +G VA R + ++ +TG+ Sbjct: 59 LGAAAILCEEAPQQPQPNVTYAVVKSTEDEVG-----KVATRFFGDPSKHLKLVGVTGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPLT------------LARM-PVDVD 161 GKTT +L + + + N I +P LA+M + Sbjct: 114 GKTTVATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCE 173 Query: 162 FGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + E + +G + F + T + HL E +AK F+G Sbjct: 174 YVFMECSSHAIAQKRIGGLTFTG-------GIFTNLTRDHLDYHKTFENYRNAKKSFFDG 226 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L K+ N DD ++ + A ++ ++ ADF+ R +E Sbjct: 227 LPKSAFAITNADDKNGMVMVQNTKA----SVKTYSIQSMADFKAR---------IIECHF 273 Query: 277 QGKSMEVVHHGIGYHMA-----QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 QG + + +G N+L G +L + + A+S H GR + Sbjct: 274 QGMYLAIDGQEVGVQFTGKFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQ 333 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +GF ++D Y P ++K + + ++ G+G I V G Sbjct: 334 SP--EGFTAIVD--YAHTPDALKNVLLAIHEVD--GKGHIITVCG 372 >gi|308184524|ref|YP_003928657.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180] gi|308060444|gb|ADO02340.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180] Length = 493 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 83/364 (22%), Positives = 154/364 (42%), Gaps = 46/364 (12%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + D E K+ ++ I + + + S + Sbjct: 274 LL-------------DSKRLE----KAFCYSVEKIKPYAPKDSPLIDV-----SSLVKNI 311 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-------DVDTAIKALSVFHPKEG 325 + L+G S E + +G+ +L +I +A ++T VF K Sbjct: 312 QSTLKGTSFETLINGVWERFETKVLGEFSAYNIASAILIAKHLGLETERIKRLVFELKPI 371 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-EL 384 + +NQ +ID+S+N N M I +++ +GR++ V + E E Sbjct: 372 NHRLQLLEVNQKI--IIDDSFNGNLKGMLEGI----RLASLHQGRKVIVTPGLVESNTES 425 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 +++ + EV + I+ S +A K +P+ I + ++ + +Q++ + G Sbjct: 426 NEALAQKIDEVFDVAIITGELNS--KTIASKLKIPQKILLKDKAQLENI---LQATTIQG 480 Query: 445 DVVV 448 D+++ Sbjct: 481 DLIL 484 >gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] Length = 506 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 20/226 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ AV GA V+ + + +PV Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVAVLTDPTGAERAAATGLPVL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D + +LA + I ITG+ GKTTT ++ L ++ T IG+ Sbjct: 95 VVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKGVRST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H I V Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIGVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 T ++P H+ SG+E+ AKA++F E++ +N DD + L Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFT-PERSRLGVVNLDDEYGRRL 257 >gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] Length = 492 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 79/361 (21%), Positives = 138/361 (38%), Gaps = 41/361 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D + ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA V + + +TG+ GKT+ + L A + + IG+ N Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 150 PLT----LARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPHIAV 188 L PVDV ++ L S + + F + A+ Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCS-------AI 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245 T + HL +E + K+ +F GL+ +N DD + EL+ Sbjct: 202 FTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHA---IINVDDEYGAELVGRLKKDCPDL 258 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +Y +G S+ AD + + S+ Q + +G AQN+ + ++ Sbjct: 259 AVYGYGFSEQADICITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCA 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ ++ L+ P G R C +N G L+ Y P +++ A+S L +I P Sbjct: 319 NGYPLNNVLEVLAKIRPASG---RMDCIMNSG-KPLVVVDYAHTPDALEKALSTLQEIKP 374 Query: 366 H 366 Sbjct: 375 Q 375 >gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 255 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 33/231 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------------MVAS 77 +++DSR + + F A+KG DG FI A+++GA LV+ D + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V V ++ L+++A A A K T++ +TG+ GKTT+ ++L + + Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 136 TYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLT 179 A +G+ N + G + + R D DF E+ L + R Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYR--A 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + +AV T ++ HL +EE A AK +F L+ + LN DD Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV-LNADDE 251 >gi|227524691|ref|ZP_03954740.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227088175|gb|EEI23487.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 443 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 38/283 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I ++G+ GKT+T +L+ LS I T IG + GVP + F ++E Sbjct: 105 TSIGVSGAHGKTSTTGLLSHVLSGIAPTDYLIGDGSGR-GVP--------NARFFVYEAD 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R P A++T I H + I+++ A + F K G IF D Sbjct: 156 -----EYRRHFLATEPDYAIMTNIDFDHPDYYKNIDDVQDA-FQTFANQTKKG-IFAWGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D LKAK IY +G + DFQ K+ ++ S V+ +GK + E Sbjct: 209 DKRLRKLKAKV------PIYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPL 262 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + D++ + L F +G +R+ G T+ID+ Y Sbjct: 263 FGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTF---DGVKRRFSERKISG-MTIIDD-YA 317 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380 +P +KA I Q PH R IA++ D + Sbjct: 318 HHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK 360 >gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK49] Length = 459 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIVGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I L P IAVIT + P HL +E+ A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAL----HPQIAVITNLMPTHLDYHGSLEDYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] Length = 463 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 49/373 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S+ + F AIKG DGH+F+ A+ +GA V+V D +G + Sbjct: 7 VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKD----VGITDNRIV 62 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITG---------------SVGKTTTKEMLTIA 129 V D AL +L A + K +I ITG + G T + TI Sbjct: 63 KVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLVGTIY 122 Query: 130 LSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIFELGMSH-LGEIR-FLTHLVRPHI 186 + K Y G H V TL +M D + SH L + R + TH HI Sbjct: 123 YRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHF---HI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ HL +EE AK +F+ + +N DD + + + + I Sbjct: 180 VGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYEYAV-VNSDDEYGKRIVRELKGRAI-- 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---LMTLGIV 303 ++G+ DF++ + E S ++V +GK+ + + +G A N+ ++ +V Sbjct: 237 --TYGRE--GDFKILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLV 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 I ++ +K V+ P GR + YR GF ++D Y P +++ + + ++ Sbjct: 293 GIEVQAIEEGLK--KVYVP--GRFETYR---GDGFLVIVD--YAHTPDALENVLKSIRRL 343 Query: 364 SPHGEGRRIAVLG 376 S GR I + G Sbjct: 344 ST---GRVITLFG 353 >gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC 51756] gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC 51756] Length = 465 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 30/265 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + + T+ IG G T AR+ D ++ + E Sbjct: 108 IAVAGTHGKTTTTSLVASILAAADLDPTF-VIGGLLKSAG---TNARLG-DGEYLVAEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL + P +AV+T I H+ + G +EE+ A + + L G L Sbjct: 163 ES---DASFL--YLAPVMAVVTNIDADHMDTYGGSLEELRRAFLQFLQRLPFYGLAVLCT 217 Query: 228 DDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEV 283 DD L + +S LG +G S +AD Q R W Q +S EV ++ G+++ Sbjct: 218 DDPLVRGLIPELRSPVLG------YGFSASADLQARHWHQVGGRSRFEVWRRVDGEAVHW 271 Query: 284 VHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + G H N L +GI S + +T AL+ F G G+R+ + T Sbjct: 272 LDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFR---GVGRRFEILGDFAGIT 328 Query: 341 LIDESYNANPASMKAAISVLSQISP 365 ++D+ Y +P ++A ++ + P Sbjct: 329 IVDD-YGHHPRELEATLAAARDMWP 352 >gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans DMS010] gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans DMS010] Length = 473 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 48/369 (13%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ LS + T+ IG N G + AR+ G + + Sbjct: 115 IAVAGTHGKTTTTSLIAALLSEGELDPTF-VIGGRLNSAG---SNARLGT----GRYLVA 166 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFL 225 + + FL ++P IAV+T I H++ + G + KA E L G + Sbjct: 167 EADESDASFL--YLQPMIAVVTNIDEDHMATYEG--DFGKLKATFIEFLHHLPFYGLAVM 222 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEV 283 DD + L A+ + ++G+ ++AD+QL Q QS+ V + G+ + Sbjct: 223 CLDDPVVKELLAEV----TRPFITYGQDEDADYQLVDLTQHQGQSFFTVVEKHSGERYPI 278 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-----GF 338 + G H A N + + L ++ +AL F +G G+R+ L Q G Sbjct: 279 TLNMPGLHNALNATAAMAVARNLAVNIAACQQALLKF---DGIGRRFNL-LGQVDAEGGK 334 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 TLID+ Y +P + A ++ P R+ V+ F D A VLS Sbjct: 335 ATLIDD-YGHHPTEIAATLAATRGGWPD---NRVVVVFQPHRYSRTRDLFE-DFAHVLSA 389 Query: 399 YNI---SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 ++ V+ +G +A DA L R+I + ++E + LF + L DGDV+ Sbjct: 390 VDVLVMLEVYPAGESKIAGADARSLCRAIRLRGQVEPVFAENQEELFALLPGLLKDGDVL 449 Query: 448 VVKSSNSCG 456 + + G Sbjct: 450 LTLGAGDIG 458 >gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1087] Length = 459 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLIGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVMPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] Length = 506 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ A GA V+ + + +PV Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVAVLTDPTGADRAAATGLPVL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD G + +LA + I ITG+ GKTTT ++ L +++ T IG+ Sbjct: 95 VVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRTVRST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H IAV Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VDAVAMEVSSHALVLGRVDGCVFDIAVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 ++P H+ S +E+ AKA++F +++ +N+DD + L Sbjct: 213 NNLSPEHMEFHSDMEDYFRAKAQLFT-PQRSKLGVVNFDDEYGRRL 257 >gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 498 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 64/402 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIP-- 84 I+ DSR + P F A++G DGH F AV++GA V+V D+ ASI + +P Sbjct: 26 ITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEEPVADVPASIPQVVVPDT 85 Query: 85 ----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 D + G+ ++ LR +I +TG+ GKTT ++ L S + I Sbjct: 86 RHWSALVADRLFGSPSR-----ELR----VIGVTGTNGKTTVTHIVRHLLDSTGRKAGLI 136 Query: 141 GSYNNHIG-----VPLT---------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRP 184 G+ +G +P T L R VD + E+ L E R V Sbjct: 137 GTVGAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHALVERRAAG--VSF 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELLK 236 A T + HL +E A+AKA +F G + +++ +N DD + ++ Sbjct: 195 ACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWSPVMA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 S A I ++G + AD + R + + + V + E+ IG N Sbjct: 255 EASAA----PILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNT 310 Query: 297 LMTLGIV---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 L + I + +++ I++ G+ R Q F +D Y P + Sbjct: 311 LAAVAIALVEGLAASEIQEGIRSYPSVP-----GRMERIDEGQPFSVFVD--YAHTPDGL 363 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + ++ + + +P R + V+G C G+ ++ +AEV Sbjct: 364 ENVLASVREFAP---ARVLVVVG--C-GGDRDRTKRPKMAEV 399 >gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] Length = 454 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 22/216 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P + F AI DGHD+I A+ GA T ++A G+ S+ V+ Sbjct: 5 LKTDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGA------TKIIAEHGNYSVETVIVE 58 Query: 90 DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + LN+ L +I +TG+ GKTTT M+ LS +K+ A +G+ + Sbjct: 59 NTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGFYY 118 Query: 148 G-VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AVITTIA 193 G + + DVD L + + + V H T + Sbjct: 119 GNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVAFTNLT 178 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 HL +E A+AK ++FE +N DD Sbjct: 179 QDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDD 214 >gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] Length = 495 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 35/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S+DSR + F A+ G G DFI +A+++GA ++ + A I I Sbjct: 25 ITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTDQKG-AEIAKKEIEAS 83 Query: 87 GVDDVLG--ALNKLAVAARLRSKAT---IIAITGSVGKTT----TKE---MLTIALSSIK 134 G V+ LA AA L A +A+TG+ GKT+ T++ +L +++ Sbjct: 84 GAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTRQIWALLGFEAANVG 143 Query: 135 KTYACIGSYNNHIG----VPLTLARMPVDVD-FGIFELGM---SHLGEIRFLTHLVRPHI 186 T G+Y+ G P+TL R+ D+ GI + M SH E R L + + Sbjct: 144 TT-GVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGLEQRRLDGM-QLAA 201 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T HL + E +AKA +F L + G +N +D+ F+ + + G + Sbjct: 202 AGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQDISRLAEKRG-Q 260 Query: 246 TIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + S G+ +NA ++ ++++ + E ++ EV IG A+N+LM G+ Sbjct: 261 EVLSVGRDENASIRIIAQRFEPMGQTVLFE--YNDRTFEVKLPLIGGFQAENVLMAAGLA 318 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 AD + L GR G +D Y P ++ A L Sbjct: 319 IASGADANEIFGVLPQLKTVRGR-MELAATRKNGASIFVD--YAHTPDALATACRAL--- 372 Query: 364 SPHGEGRRIAVLG 376 PH GR I V G Sbjct: 373 RPHVLGRLIVVFG 385 >gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] Length = 482 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 48/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +S+ I F AI G +YDGHDFI A+++GAG VV+ + G L I V Sbjct: 24 IESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALERGAG-VVIGEKALDLGGKLYIRVK 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 L AL+ K +I +TG+ GKTT +++ L I IG+ Sbjct: 83 DSRKAL-ALSSAWFYGYPADKLKLIGVTGTSGKTTVTYLISEMLKDIGICTGIIGT---- 137 Query: 147 IGVPLTLARMPVD----VDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAV 188 IG L ++P + +L + E I +L V H + V Sbjct: 138 IGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQRVEGIKFDVGV 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247 T + HL E+ ++K ++F ++ +N DD ++ L I I Sbjct: 198 FTNLTQDHLDFHKTFEDYFNSKKKLF---SQSKQAVINIDD------ESGKRLLSIINIP 248 Query: 248 -YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y++G K AD + + + ++ + K V + G N L + L Sbjct: 249 RYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPGLFSVYNSLAAITAGVAL 308 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQI 363 +D I L K+ +G R L NQG ++D Y P +K +VL I Sbjct: 309 GFPIDDLINTL-----KKAKGVPGRFELVENNQGIIVIVD--YAHKPDGLK---NVLLTI 358 Query: 364 SPHGEGRRIAVLG 376 G+ I V G Sbjct: 359 REFCTGKIITVFG 371 >gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] Length = 501 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 48/378 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + +AF A G DG ++ A+++GA V+V D G + + G Sbjct: 26 LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVEAD-----GLQAFDLSG-- 78 Query: 90 DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136 D + AL L A L + ++A+TG+ GKTTT L ALS + + Sbjct: 79 DSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138 Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180 A +G+ +GVP L R D + S +G + Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238 + +A+ T HL ++ AKA++F+ GL +N DD+ L A+ Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAA---VVNIDDAHGARLWAR 253 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++S A Q + E V G S+ + +G + N+L Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L ++ A++A + P GR ++ + + L+ Y P +++ A+ Sbjct: 313 VLATLRCLGLTLEQAVQACADLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368 Query: 359 VLSQISPHGEGRRIAVLG 376 L + +G+ V G Sbjct: 369 ALQPAARQRQGKLWCVFG 386 >gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] Length = 480 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 153/371 (41%), Gaps = 41/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR++ P + FFA+ G DG FI AV+ GA VV A S+PV Sbjct: 22 VAGVAVDSRAVKPGDVFFALGGHKTDGARFIEAAVKAGAVAVVTGHPHTA-----SVPVV 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---Y 143 DD AL A R TI A+TG+ GKT+ S+ A +G+ Sbjct: 77 VADDPRRALALAAAVVYPRQPRTIAAVTGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIV 136 Query: 144 NNHIGVPLTLARM-PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVITTI 192 + H V +L PV + I EL G++HL G + VR T + Sbjct: 137 SRHRNVYGSLTTPDPVALHRAIDELAGDGVTHLALEASSHGLDQHRLDGVRITATAFTNL 196 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYS 249 + H+ +E + K +F L G I +++ S + A++H L + T+ Sbjct: 197 SRDHMDYHPTVEHYLATKLRLFTDLAPEGAPAVIAADHEHSATVIAAARTHKLNVMTVGR 256 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G+ +L + M V+ +G++ + +G +N L+ G+V D Sbjct: 257 QGEG----IRLVEAAIDGFGQRMTVEHRGQNWRLRLPLVGEFQIENALVAAGLVISTGGD 312 Query: 310 VDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A AL +GR G R+ G +D ++ + A + L + P Sbjct: 313 AAQAFAALEHLEGAKGRLELVGDRF------GAPVFVDYAHKPD-----ALVKALEALRP 361 Query: 366 HGEGRRIAVLG 376 + +GR + V G Sbjct: 362 YAKGRLVVVFG 372 >gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] Length = 500 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 150/374 (40%), Gaps = 40/374 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR+ P F A++G DGH F+ A + GA VV + + + +P Sbjct: 24 VTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEARRSGAVAAVVEDCLDTPLPQIVVP-- 81 Query: 87 GVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D A AV R S+A +I +TG+ GKTT ++ L + IG+ Sbjct: 82 --DTRRAAAVLAAVFFRHPSRAMRVIGVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQT 139 Query: 146 HIG---------VP--LTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVIT 190 IG P + L R+ + D G+ M SH E+ + R H AV T Sbjct: 140 RIGDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVMEVSSHALELDRVAG-TRFHTAVFT 198 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELLKAKSHAL 242 + HL +E AK ++F G + F +N DD + + ++ A Sbjct: 199 NLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTRADQAFAVVNLDDPVGKWMARQTTAQ 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++G + AD + R+ + + +++G+ V G N L +G Sbjct: 259 TV----TYGVDRPADLRAREVEVDTRGVRFVAEIEGRRTRVHVPLPGRFSVYNTLAAMGA 314 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 I D+D L+ GR +R Q F ++D Y P S+ + L + Sbjct: 315 GWIQGLDLDWMADQLARVSGVPGRMERVDAG--QPFGVVVD--YAHTPDSLDNVLQALRE 370 Query: 363 ISPHGEGRRIAVLG 376 ++ GR I V G Sbjct: 371 VA---SGRLIVVFG 381 >gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] Length = 482 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 161/394 (40%), Gaps = 47/394 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFG-----VDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ DM PV G V D A+ K+A SK ++ +TG+ GK Sbjct: 63 AILCE-DMPEE------PVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLT----LARMPVDVDFGI 164 TT +L I + N+I P+T L RM + + Sbjct: 116 TTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 F SH + ++ L + + T + HL +E AK + F+ L K Sbjct: 176 FMEVSSHSIAQKRISGL-KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD ++ + +Y++ +DF+ R E + + L + E+ Sbjct: 235 TNLDDKNGLVMTQNIRS----KVYTYSLRSLSDFKGRVL----ESHFEGMLLDFNNHELA 286 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N+L G +L + + ALS HP GR R QG ++D Sbjct: 287 VQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSP--QGITAIVDY 344 Query: 345 SYNANPASMKAAISVLSQISP--HGEGRRIAVLG 376 ++ + A I+VL+ I G+G+ I V+G Sbjct: 345 AHTPD-----ALINVLNAIHGVLEGKGKVITVVG 373 >gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] Length = 493 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 79/360 (21%), Positives = 144/360 (40%), Gaps = 31/360 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88 + +DSR + P + F A +G + DG ++I A+ GA +V ++ D A I GV Sbjct: 27 LRMDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSGDGFAWRPEWQIANLGV 86 Query: 89 DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + N +AA+L + +TG+ GKT+ + L A + A IG+ Sbjct: 87 PHL--KQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVG 144 Query: 145 NHIGVPLT----LARMPVDVDFGI------------FELGMSHLGEIRFLTHLVRPHIAV 188 N L PV V + E+ L + R + A+ Sbjct: 145 NGFWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPF--SSAI 202 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TI 247 T + HL + ++KA++F + +N DD F L A A + Sbjct: 203 FTNLTRDHLDYHGSMAAYGASKAKLFY-WQSLQHAIINTDDEFGRELAAGLRADRPNLNV 261 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y +G ++ AD ++ ++ + + S E+ +G AQN+ +G++ Sbjct: 262 YGYGFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEG 321 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L+ P G R C +++ L+ Y P +++ A++ L +I P G Sbjct: 322 YSLPDVLRVLAQIRPATG---RMDC-ISRAGRPLVVVDYAHTPDALEKALATLREIKPQG 377 >gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea 34H] gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea 34H] Length = 503 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 53/371 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + T+ IG N G T AR+ + + Sbjct: 131 IAIAGTHGKTTTTSLIASIFAQGKLDPTF-VIGGLLNSAG---TNARL----GSSRYLVA 182 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P ++VIT I H+ + G E++ E L G + Sbjct: 183 EADESDASFL-HL-QPMVSVITNIDADHMETYQGDFEKLKDTYIEFLHNLPFYGLAVVCI 240 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 D+ ELL S + + ++G SK+AD + ++Q S V+++G+ +E+ Sbjct: 241 DNPVVRELLPRIS-----RQVITYGFSKDADVRAVNYQQNGAVSHFTVEVEGQEPLEMSV 295 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTL 341 + G H N L + + + + KAL+ F EG G+R+ + G L Sbjct: 296 NLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEF---EGIGRRFEKLTDFSTAAGDMVL 352 Query: 342 IDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHID 391 +D+ Y +P+ +KA I + Q PH R + D E+ LS+ +D Sbjct: 353 VDD-YGHHPSEVKATILAMRQGWPDKRLVMVFQPHRYSRTRDLYEDFVEV--LSE---VD 406 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 +L +Y +S A +L RSI + Y +D L + + L D D Sbjct: 407 CLFLLDVYAAGETPISS----ADSKSLARSIRLRGQIEPVYVSDVDKLPQLLATQLQDND 462 Query: 446 VVVVKSSNSCG 456 +V+ + + S G Sbjct: 463 MVITQGAGSIG 473 >gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK355] Length = 459 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQAQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] Length = 487 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 152/377 (40%), Gaps = 53/377 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR + + F AI+G DGHD+I AV +GA L ++ +M I + I Sbjct: 24 ITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGA-LAIICEEMPQQIVN-GITYV 81 Query: 87 GVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEML----------TIAL 130 V D AL +A +A L+ +I ITG+ GKTT +L T L Sbjct: 82 KVADTSSALATIASNYYGNPSANLK----LIGITGTNGKTTIASLLYQLFKKAGYKTGLL 137 Query: 131 SSIKKTYACIGSYNNH-----IGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184 S++K I H + + LA M V++ E+ + + R T + Sbjct: 138 STVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVSSHGIHQKR--TEGLHF 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + T ++ HL E K + F+ L KT +N DD ++ + Sbjct: 196 EGGIFTNLSHDHLDYHETFAEYRDVKKKFFDELPKTAFALVNNDDKNGPVMVQNT----- 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299 K+K + L+ + Q +E QL G + EV IG A N+L Sbjct: 251 -------KAKKVTYALKSYADYRAQ-ILENQLSGLLLKVQDQEVWVKLIGSFNAYNLLAI 302 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +L D A++ LS G R++ +++G T I + Y P ++K + Sbjct: 303 FAAAELLELDQMEALQLLSELESVSG---RFQYFISEGNVTAIVD-YAHTPDALKNVLET 358 Query: 360 LSQISPHGEGRRIAVLG 376 ++ I E I V+G Sbjct: 359 INDIRTKNE-ELITVIG 374 >gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 488 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 145/371 (39%), Gaps = 39/371 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI DSR + F I G ++DGH FI A+++G+ +VVV D+ + + V Sbjct: 25 IRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSRVVVVEKDVKT---AKDVTVI 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL LA K ++ I G+ GKTTT ++ L K A G+ Sbjct: 82 KVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKTTTTYLVRDVLKKAGKKVALFGTIE 141 Query: 145 NHIG---------VPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +G P +L V+ +F + +S + I V T Sbjct: 142 YDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVMEVSTHATVLDRVTGCEFDIGVFT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIYS 249 I+ H+ +E A+ + F L +TG +N DD + E + + I + Sbjct: 202 NISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVINIDDPYAEHIIKNTRT----EILT 257 Query: 250 FG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSI 305 +G KNAD + K S V G + N L +G+ + Sbjct: 258 YGINDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLRLPGRYNVYNALAAVGVGISEGL 317 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ AI SV GR +R C Q F ++D Y P +++ A+ +S Sbjct: 318 NLNEIREAIAHASV----PGRFERIDCG--QSFDVIVD--YAHTPDALQKALETARGLS- 368 Query: 366 HGEGRRIAVLG 376 EGR I V G Sbjct: 369 --EGRIIVVFG 377 >gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 495 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 94/403 (23%), Positives = 153/403 (37%), Gaps = 52/403 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L + G I P + + DSR I P F I G H D H FI + + Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61 Query: 64 GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAIT 114 GA V+ N D+ A I L +P D+ AL+ + A +R ++ IT Sbjct: 62 GARAVLTQRENVDVPAGISVLRVP-----DLNAALDIIVPYFYDYPARSMR----VVGIT 112 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD 159 G+ GKTTT ++ L + + +G+ + + + LA M Sbjct: 113 GTNGKTTTSYLVRAILRAAGRRVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRAR 172 Query: 160 -VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--- 215 +D + E+ L + R + AV T + HL +E A AKA +FE Sbjct: 173 GMDTVVMEVSSHALDQGRVAG--IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVS 230 Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 G++ T +N DD+ +++A + + S+G ++ A R + + M Sbjct: 231 APGVKAGKTAVINADDAAGPVMRAHTTC----PVLSYGVTQQAALTARDIRLAQDGMTMR 286 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + + + H G N+L G D AL F GR + R Sbjct: 287 LVHGDEECALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA- 345 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Q F ++D Y P M+ + ++ GR I V G Sbjct: 346 -GQDFSVIVD--YAHTPDGMENVLRTARAVT---RGRIIVVFG 382 >gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 507 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 155/378 (41%), Gaps = 34/378 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S + P F AIKG DG+ + A+ GA L++ D +L++P Sbjct: 24 VKGITDNSNEVRPGYIFIAIKGHKEDGNIYTQQAILNGAILIIGEDDFT----NLTVPYL 79 Query: 87 GVDDVLGALNKLAVA-ARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L ++A + SK I I ITG+ GKTT + L + + IG+ Sbjct: 80 KVKNARKTLGQVAKKFYKDPSKNKIMIGITGTNGKTTIGFFIKQLLEKQGYSVSSIGTIY 139 Query: 145 NHIG---------VP--LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 N I P T+ ++ + + +S G + ++ A+ + Sbjct: 140 NEINGKRIQSVNTTPNAKTINQLLTASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQ 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +EE KA +FE L+ GT +NY+D + + L + A G K I + G+ Sbjct: 200 HDHLDYHGTMEEYFECKALLFEKLKLDGTAIINYNDRWGKKLTERLTAQGKKVI-TVGEE 258 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 Q+ E + + V+ + K + G H +N+ M+ + L + Sbjct: 259 PTNQVQIL----AKELNNVSVRYKNKEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQV 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESY--NANPASMKAAIS--------VLSQI 363 +S F GR + + A ++D ++ +A S+ AIS V Sbjct: 315 TTYMSQFSGIAGRFEIFHLA--NKVTVVVDYAHTPDALATSINTAISNGAKRIITVFGFA 372 Query: 364 SPHGEGRRIAVLGDMCEM 381 E +R A+L ++C + Sbjct: 373 GNRDESKRKAMLENVCRL 390 >gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] Length = 487 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 83/382 (21%), Positives = 155/382 (40%), Gaps = 56/382 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G +DG I A+Q+GA V D + +P+ Sbjct: 17 LIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVDGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAKQLSD--IAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180 + N I V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV+T ++ HL +E A+AKA++F +N DD F L A+ Sbjct: 192 ----DVAVMTNLSRDHLDYHGTMEAYAAAKAKLF-AWNDLKCRVVNLDDEFGRHLAAQDS 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + YS S + C E + + +G +V +H+ +L Sbjct: 247 ESRLIS-YSLQDSS-------AYLYCREAQFND---EGVRATLVTPQGEHHLRSTLLGRF 295 Query: 301 GIVSILTA-----DVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + ++L A +D A+ + PK EG R + L G L+ Y P +++ Sbjct: 296 NLSNVLAAIGALLGLDYALDEILNVLPKLEGPAGRMQ-RLGGGEQPLVVVDYAHTPDALE 354 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 VL + PH +G+ + + G Sbjct: 355 ---KVLEALRPHAKGKLLCLFG 373 >gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] Length = 497 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 87/379 (22%), Positives = 158/379 (41%), Gaps = 47/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA--------GLVVVNTDMVASI 78 + GI++DSR + F A+ G G +FI +A+++GA G + D+ S Sbjct: 26 ITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGARIAERDLAESD 85 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT------------KEML 126 +L I +D AL A + + A+TG+ GKT+ +E + Sbjct: 86 AALVI----AEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWMLVGREAV 141 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHL 181 + + ++ +Y+ + P+TL RM ++ + GI M SH L + R + Sbjct: 142 NLGTTGVEGSYSA--PLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRRLDGVM 199 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 +R + T + HL +EE AKA +F L +N D + + Sbjct: 200 LR--VGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAEVAA 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ + + G ++A+ ++ + ++ M G+ +V + IG A+N+L+ Sbjct: 258 DRGLD-VLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLVAA 316 Query: 301 GIVSILTADVD---TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 G+ + D D T + ALS H + R G +D ++ + A Sbjct: 317 GMAILSGEDPDQVFTVLPALSTVHGRMELAARR----TNGAAVFVDYAHTPD-----AVA 367 Query: 358 SVLSQISPHGEGRRIAVLG 376 + L + PH GR +AV+G Sbjct: 368 TALKALRPHVLGRLVAVIG 386 >gi|302561121|ref|ZP_07313463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces griseoflavus Tu4000] gi|302478739|gb|EFL41832.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces griseoflavus Tu4000] Length = 195 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 23/190 (12%) Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ--GFFTLIDESY 346 G H N L + L D +ALS + G R+R + + T+++++Y Sbjct: 7 GEHHVSNALAAAAVAHELGMSADEIARALS----EAGSLSRWRMEVTERPDGVTVVNDAY 62 Query: 347 NANPASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHV- 404 NANP SMKAA+ L + G+GRR AVLG M E+G+ + + H + + N+S + Sbjct: 63 NANPESMKAALRALVAM---GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLV 119 Query: 405 --------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 WL + A + VH S+ + L ++S L GDVV+VK+S S G Sbjct: 120 AVGGREAAWL---QLGAYNEGSWGEESVHVSDAQAAVDL-LRSELRPGDVVLVKASRSVG 175 Query: 457 FYRLINLLLE 466 + LLE Sbjct: 176 LESVAQALLE 185 >gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5] gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5] Length = 454 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 32/288 (11%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140 +IPV ++L L KL IA++GS GKTTT M+ I +++ + I Sbjct: 89 NIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSMIAEILINAGLEPTVII 139 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G L R+ + G EL +S E ++P +AVIT + HL + Sbjct: 140 GG---------RLKRLGTNAKLGRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFY 190 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E + A + + G +N DD L KSH + + ++G + A + Sbjct: 191 ENFERVKEAFEQFMNSVPFYGFAVVNLDDPTLAQLVKKSH----ERVITYGINSPALVRA 246 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + V+ +GK + +H GI G H N L G+ L + K+L Sbjct: 247 KNLYLKEGRYEFGVEFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEE 306 Query: 320 FHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISP 365 F R R L +G++ + + + Y +P +KA I+ L + P Sbjct: 307 F-----RNAERRLEL-KGYYKNSPVYDDYGHHPTEIKAVINSLRDMYP 348 >gi|328957052|ref|YP_004374438.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4] gi|328673376|gb|AEB29422.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4] Length = 443 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 126/305 (41%), Gaps = 48/305 (15%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A+ + T +A+TGS GKT+T +L LS +K T IG H GVP D D Sbjct: 98 AQFIGQFTSVAVTGSHGKTSTTGLLAHVLSPLKNTSYLIGDGTGH-GVP--------DAD 148 Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F I E E R FL + +P A++T I H +S + ++ A + ++K Sbjct: 149 FFILE-----ACEYRRHFLAY--QPDYAIMTNIDFDHPDYYSSLSDVFDAFQSMAVQVKK 201 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 I DD + L+A + +Y +G + DFQ + + + S +V ++ Sbjct: 202 --AIVACGDDEQLQKLQA-----NVPILY-YGFEDHNDFQAKNMTRSTTGSTFDVYVRD- 252 Query: 280 SMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 E H G H N L + I D + ++ L F +G + R + Sbjct: 253 --EFYGHFEIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTF-----KGVKRRFSEK 305 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELS 385 Q +I + Y +P+ ++A I Q PH R +A+L D E L+ Sbjct: 306 QMLDMVIIDDYAHHPSEIRATIDAARQKYPNKEIIAIFQPHTFTRTVALLSDFAESLNLA 365 Query: 386 QSFHI 390 S ++ Sbjct: 366 DSIYL 370 >gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 472 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 29/289 (10%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HI 147 L++ A L + I G+ GKT+T MLT+AL + ++A G N H Sbjct: 103 LHRAEALAALMEGHRVACIAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHH 162 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G GIF + + + FL++ P +AVIT I P HL + + Sbjct: 163 G------------QGGIF-VAEADESDGSFLSY--SPSVAVITNIEPDHLDHHGTADAYH 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQC 266 + + +E GT+ + DD L ++ A G++ + Y + AD ++ + Sbjct: 208 AVFHDFVRRIEPGGTLIVCADDEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPG 267 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + L+G+ + + G HMA N + L L AD++ ++ L+ F G Sbjct: 268 EDGGTVRIVLRGEQLRMGVAVPGEHMAFNAVAALLAGLELGADLEGLVEGLAAFG---GV 324 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +R+ G + D+ Y +P + A + + Q + G GR + V Sbjct: 325 RRRFEFKGRAGDVRVYDD-YAHHPTEVSAQLRAVRQAA--GRGRVVVVF 370 >gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] Length = 483 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 53/379 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR + P F A++G DG +I A+++GA +V TD A + + S+PV Sbjct: 21 ITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQAIV--TDCNAVLENFSVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142 V DV +L A ++A+TG+ GKT+ L + + A IG+ Sbjct: 79 RVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVVSFLRQIWTHVGLCAASIGTVGIV 138 Query: 143 ---YNNHIGV----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N+ P+ L R+ + V E L + R VR A T Sbjct: 139 SPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEASSHGLDQSRL--DGVRLTAAAFT 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244 + H+ +E+ AK +F+ L L + D + + KA+ L I Sbjct: 197 NLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFADDIYSQKVIDIVTKARRRILTI 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 F + Q + KQC E +E + + + G N LM G+ Sbjct: 257 GRKGKFITINRIEHQ--RLKQCVE-CRVENNIYTFDLPLA----GNFQVTNALMAAGLA- 308 Query: 305 ILTADVDTAIKALSVFHPKE-GRGKRYRCALNQGFFTLIDESYNANPASM------KAAI 357 + T + VFH E +G G L+ ++ N P + +A Sbjct: 309 -----IATGVSPKKVFHSLEILQGA-------PGRLELVGKTENNAPVYIDYAHKPEALE 356 Query: 358 SVLSQISPHGEGRRIAVLG 376 VL + P +GR I V G Sbjct: 357 QVLLSVRPFTQGRLILVFG 375 >gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] Length = 476 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 32/296 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLSI 83 G+ S ++ P + F A+ G DG FI AV +GA +VV V A + +L++ Sbjct: 17 TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVHKEGVAVAPAAGVSTLAV 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P LG L + A R I+ +TG+ GKTTT ++ LS+ IG+ Sbjct: 77 P--NPAQTLGVLARAACGTESRLP-RIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIGTV 133 Query: 144 N-----NHIGVPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + + +T + RM D V+ + E+ L + R T + + Sbjct: 134 HCSWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQER--TAGLPMAVG 191 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + + HL +E AK+ +F +G + +N DD + LK Sbjct: 192 VFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRLKMMR-----PD 246 Query: 247 IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG S++A+ + R +E + + G + E+ +G H A N+L +G Sbjct: 247 LLGFGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVG 302 >gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] Length = 483 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 160/387 (41%), Gaps = 37/387 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+ + + + VN I DSR + + F + G DGHD+ A++ GA +V Sbjct: 5 DLLKGVDYELLEGTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAGAKVV 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 + + I S + V V++ AL ++ +I +TG+ GKTTT +L Sbjct: 65 LCEKKI--DIKSEGVTVLLVNEGRKALATMSANYYGHPTKSLKLIGVTGTNGKTTTVYLL 122 Query: 127 TIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVDV-----DFGIFELGMS 170 L K +G+ N+IG P L L ++ D+ ++ + E+ Sbjct: 123 KSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVMEVSSH 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L R + + + T + HL + +AK ++F E++ +N DD Sbjct: 183 SLQLDR--VYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLF---ERSKASVINVDDD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + L K I ++ + N+DF+ ++ + ++ G+ V G Sbjct: 238 YGYRVLKDVEKLENKEIKTYSINNNSDFKASDL--MLKEGDIHFKINGEEFNSVLP--GE 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + N L +G +SIL ++ K L V P GR +R + + +ID + Sbjct: 294 YNVYNALGAVGAMSILGISNESIRKGLLDVVVP--GRCERIGYKYDIPYDIIID--FAHT 349 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P +K ++L + + R IAV G Sbjct: 350 PDGLK---NILETLKGFTKNRLIAVYG 373 >gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] Length = 495 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 94/403 (23%), Positives = 153/403 (37%), Gaps = 52/403 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L + G I P + + DSR I P F I G H D H FI + + Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61 Query: 64 GAGLVVV---NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAIT 114 GA V+ N D+ A I L +P D+ AL+ + A +R ++ IT Sbjct: 62 GARAVLTQRENVDVPAGISVLRVP-----DLNAALDIIVPYFYDYPARSMR----VVGIT 112 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVD 159 G+ GKTTT ++ L + + +G+ + + + LA M Sbjct: 113 GTNGKTTTSYLVRAILRAAGRRVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRAR 172 Query: 160 -VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--- 215 +D + E+ L + R + AV T + HL +E A AKA +FE Sbjct: 173 GMDTVVMEVSSHALDQGRVAG--IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVS 230 Query: 216 --GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 G++ T +N DD+ +++A + + S+G ++ A R + + M Sbjct: 231 APGVKAGKTAVINADDAAGAVMRAHTTC----PVLSYGVTQQAALTARDVRLAQDGMTMR 286 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + + + H G N+L G D AL F GR + R Sbjct: 287 LVHGDEECALTLHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRA- 345 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Q F ++D Y P M+ + ++ GR I V G Sbjct: 346 -GQDFSVIVD--YAHTPDGMENVLRTARAVT---RGRIIVVFG 382 >gi|308182899|ref|YP_003927026.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; putative membrane protein [Helicobacter pylori PeCan4] gi|308065084|gb|ADO06976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; putative membrane protein [Helicobacter pylori PeCan4] Length = 493 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] Length = 474 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 42/362 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S +S++I +AFFAIK +G+DFI A++KGA LV+ + + + V Sbjct: 14 VKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKK-----NTTNKVI 64 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142 V+D+ L++ + T+IA+TG+ GK++ + S I + A IG+ Sbjct: 65 FVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKAASIGTIGVE 124 Query: 143 ------YNNHIGVPLTLARMPVD----------VDFGIFELGMSHLGEIRFLTHLVRPHI 186 +N IG T + +D+ FE L + R ++ ++ Sbjct: 125 VFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRLGD--LKVNV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T+ + HL E AK ++F + L K G LN D E +K L Sbjct: 183 ACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSD---IEEIKFIKDYLDKH 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I N + ++ K + + K+ + IG A N+L+ V Sbjct: 240 KIKYLCVGANGNCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAGPSVYY 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D I AL+ +GR +R +N+ T I Y P +++ A++ L I Sbjct: 300 TSFDFSKVINALTKVKAVKGRMER----VNR---TNIFIDYAHTPDALEKALTELKNIKA 352 Query: 366 HG 367 G Sbjct: 353 KG 354 >gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] Length = 484 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 33/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS DSR + P FFA+ G DG + A ++GA V + T +++G IPV Sbjct: 22 VTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGA--VAIVTAKGSTVGGHPIPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139 VDD AL A T++A+TG+ GKT+ E A +SI T Sbjct: 80 AVDDPRLALALGAARFFGNQPQTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139 Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 N + + P+ L ++ ++ D G+ M SH + R L V+ T Sbjct: 140 APGRNEYGSLTTPDPVALHQLLKELADAGVTHASMEASSHGLDQRRLDG-VKLAAGGFTN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248 + H+ +E+ AK +F+ L G IF + S + A++ L + T+ Sbjct: 199 LGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAARAAGLEVLTV- 257 Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ DF +L++ + + EV+ G E+ G N L++ G+ ++ Sbjct: 258 ----GRHGDFLRLKRVEHERHRQRAEVEANGVLYEIDLPLAGDFQISNALVSAGLA--IS 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + TA KAL +G R + Y P +++ +VL+ + P Sbjct: 312 TGIPTA-KALMSLEKLKGAPGRLDLVGTTANGAPVYVDYAHKPDALE---NVLTSVRPFT 367 Query: 368 EGRRIAVLG 376 GR + V G Sbjct: 368 TGRVMVVFG 376 >gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS223] gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS223] Length = 499 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 28/233 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80 N +++DSR+I + F A+ G DG FI A+ GA V+V+TD G Sbjct: 21 NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHRDNA 80 Query: 81 ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134 + I VF + + A+ +S T +I ITG+ GKT+T +++ ++S+ Sbjct: 81 EHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140 Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180 + A +G+ N + +TL R D + + + +S G ++ Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 V +AV T + HL +E A+AK +F G LN DD+ E Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDTVGE 252 >gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] Length = 493 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 44/308 (14%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ + G+ +DSR P + +F + G +DGHDF+ + KG +V+ + + Sbjct: 18 PEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVK-AIVHAKPIEHMHK-G 75 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC- 139 + V++V LN++A + +TG+ GK+T ++ S + C Sbjct: 76 VAYIQVENVNRTLNRIASLFYQHPSRYMKVFGVTGTNGKSTITSIIQDVYSHF---HPCG 132 Query: 140 -IGSYNNHIG---VPLTLARM-PVDVDFGIFEL---GM--------SHLGEI-RFLTHLV 182 IG+ G +P +L P+ + + ++ GM SH E+ R ++ V Sbjct: 133 YIGTIAIRYGDVELPPSLTTPDPILIHKSMADMRAAGMEACALEVSSHGLELGRVMS--V 190 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IA+ + + HL IE AK ++F L+ G LN DD++++ Sbjct: 191 DFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTNLKSDGVAVLNRDDAYYQ--------- 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTL 300 +F N K S+ M++Q+Q G ++HH Y + N++ Sbjct: 242 ------AFADCTNGRLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEKSYTIKTNLVAMY 295 Query: 301 GIVSILTA 308 I ++L A Sbjct: 296 NIYNLLGA 303 >gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae B728a] gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv. syringae B728a] Length = 487 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVAGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + G L+ A+A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAGQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F + + +N DD F L A + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAAVKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +KAL GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] Length = 419 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R K I+A+TGS GKTT L L YA + N + + +M + Sbjct: 33 RYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGV-HRNTSRAIYKNMRKMRTSYRY 91 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+G+ G++ + P+I ++TTI H ++F E A+ K + L +GT Sbjct: 92 LVQEMGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNREGTAAEKGTLIAALPPSGT 151 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 LN DD + +++ A +I ++G S++ D + Sbjct: 152 AVLNADDPHVMAMASQTQA----SILTYGCSEHVDVR 184 >gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 84/381 (22%), Positives = 153/381 (40%), Gaps = 54/381 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G +DG D I A+++GA V + +P+ Sbjct: 17 LIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAVAYEVQGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180 + N I V TLA + V ++ L + + F Sbjct: 135 TLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV+T ++ HL ++ AKA++F +N DD F L A+ Sbjct: 192 ----DVAVLTNLSRDHLDYHGTMQAYGEAKAKLF-AWNDLKCRVINLDDEFGRQLAAEKR 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH----GIGYHMAQN 295 + T YS + A +R+ + E V QG+ HH +G N Sbjct: 247 ESRLIT-YSL-EDAGAYLYVRQAQFNDEGVRATLVTPQGE-----HHLRSTLLGRFNLSN 299 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L +G + L +D +K L GR +R L G L+ Y P +++ Sbjct: 300 VLAAIGALLGLDYALDEILKVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE- 354 Query: 356 AISVLSQISPHGEGRRIAVLG 376 VL+ + PH +G+ + + G Sbjct: 355 --KVLTALRPHAKGKLLCLFG 373 >gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase [Rhizobium etli CIAT 652] gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CIAT 652] Length = 506 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 40/376 (10%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR++AP AF A+ G DG FI A +GA + + + + A Sbjct: 41 PAGLLDISGLSSDSRNVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQPVDA---- 96 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 SIPV V + L+ A R T++A+TG+ GKT+ T+++ A +++ Sbjct: 97 -SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155 Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184 T + N G P++L ++ ++ D G+ M SH L + R V+ Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHA- 241 A T + H+ +E +AK +F+ L G + + D + + +KA A Sbjct: 214 SAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSRQAVKAAVDAG 273 Query: 242 LGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L ++T+ + D+ L++ + + E+ + + EV G N L+ Sbjct: 274 LDVRTV-----GRKGDYLTLKRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAA 328 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ A+ AL GR G +D Y P +++ +VL Sbjct: 329 GLAMSTGVVPKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVL 382 Query: 361 SQISPHGEGRRIAVLG 376 + + P GR + V G Sbjct: 383 NSVRPFTTGRVVVVFG 398 >gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum acetoxidans DSM 771] gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 25/278 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPV 158 AR+ + T IAI G+ GKTTT M IAL+ +K IG IG L Sbjct: 99 ARMMDRQTGIAIAGAHGKTTTTSM--IALTLVKNNLDPTVLIGGELTDIGGNAKLG---- 152 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 +G + + + + FL L+RP+I V+T I HL + E+I A ++ + Sbjct: 153 ---YGQYLVAEADESDGSFL--LLRPNIIVVTNIENDHLDYYKTEEKITEAFSKFIRKIP 207 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G L DD LK S L KS +AD+ +R +S +EV G Sbjct: 208 SDGMAVLCTDD---RQLKHMSTQLKRPCKTYSVKSTDADYTIRNMITDGPKSKVEVYENG 264 Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + ++ + G H N L + + + D D +ALS F +G +R++ + Sbjct: 265 TLLGILELLVPGLHNISNALAVVAVGRHIGLDFDKIAEALSTF---KGAQRRFQLIGIEK 321 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++D+ Y +P+ ++A + Q GR IAV Sbjct: 322 EVQVVDD-YAHHPSEIRATLKAARQAHA---GRIIAVF 355 >gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] Length = 493 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 102/395 (25%), Positives = 167/395 (42%), Gaps = 46/395 (11%) Query: 12 QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 QA+ S+G+ +G N G+++DSR + F A+ G G +FI +A++ GA Sbjct: 4 QAVPLSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAA 63 Query: 68 VVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ + D++AS G + V D AL + A AT+IA+TG+ GKT Sbjct: 64 VLTDATGAAMAADLMASAG---VAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKT 120 Query: 121 TTKEM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM 169 + + + LS++ T G++ + P+TL R + GI M Sbjct: 121 SVSTFVRQIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAM 180 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFL 225 SH + R L V A T HL + + AKA +F L + GT + Sbjct: 181 EASSHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVI 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + A + A G + + S G+ D L + + + +GK+ + Sbjct: 240 NIDDPKGIDMAAIARARGCE-VLSVGRD-GGDLHLTGQRFDATGQDLRFDWRGKTYQKRL 297 Query: 286 HGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTL 341 + IG A N+L+ G+V ADV I L+ RG+ A + G Sbjct: 298 NLIGGFQADNVLLACGLVIACGAKPADVFDTIPHLTTV-----RGRMQLAATRDNGGAVF 352 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D ++ + S + L + PH GR +A++G Sbjct: 353 VDYAHTPDAIS-----TALKAMRPHVMGRLVAIVG 382 >gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK72] Length = 459 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ AL++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +E A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|315586591|gb|ADU40972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Helicobacter pylori 35A] Length = 493 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU144] Length = 494 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 39/326 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + V +G G+VVVN ++ ++ + +P Sbjct: 23 VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKGNVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + T +TG+ GKT+ M+ + + K A +G+ Sbjct: 83 -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184 + P T+A + VD + + +S LG +R V Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DD F + L + + Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVTP 253 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++++G + A F + K+ + E S V +G N++ + Sbjct: 254 Y----EVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326 V +++ I A++ P EGR Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335 >gi|15611744|ref|NP_223395.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori J99] gi|4155222|gb|AAD06244.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99] Length = 493 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|308062061|gb|ADO03949.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori Cuz20] Length = 493 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+ K L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSIKNFLLQILQTTFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D D I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSDIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] Length = 480 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 146/370 (39%), Gaps = 30/370 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 + G++ DSR + P F A KG DG F+ AV+ A V+ T+ ++ +L P Sbjct: 12 IEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATNAAEAVRALVPPTV 71 Query: 85 -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D+ +K+A R TI+A+TG+ GKT+ + + A +G+ Sbjct: 72 AVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAAGHPAASLGTL 131 Query: 144 -------NNHIGV----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIA 187 ++ G+ P+ L + D + + E L + R VR A Sbjct: 132 GIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL--DGVRLTAA 189 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ IE+ AK +F E L G + ++ + + + + A + G+ Sbjct: 190 AFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAIAEERGLP- 248 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +++ G++ D +L + + V+ +V IG N L+ G+ Sbjct: 249 VFTVGETGK-DLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAAGLAITA 307 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D A++AL GR G +D Y P ++ A++ L P Sbjct: 308 GIDAGAALRALENLKGAPGR-LELAGTTPAGGMVFVD--YAHKPDALDKALAAL---KPF 361 Query: 367 GEGRRIAVLG 376 EG V+G Sbjct: 362 AEGSLSVVVG 371 >gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] Length = 483 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 96/381 (25%), Positives = 146/381 (38%), Gaps = 57/381 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR I P F A+KG DG +++ A+++GA ++V + + V SL +PV Sbjct: 21 ITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFVFE-NSL-VPVV 78 Query: 87 GVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V +V +L +A A S+ I +A+TG+ GKT+ + I K C + Sbjct: 79 RVLNVRHSL-AIAAARFYNSQPEIMVAVTGTSGKTSVVSF----IRQIWKYVGCCAASIG 133 Query: 146 HIGV---------------PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185 +GV P+ L R+ + V E L + R VR Sbjct: 134 TVGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRI--DGVRLA 191 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKS 239 A T + H+ IE+ AK +F L L + D + + +A Sbjct: 192 AAAFTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHR 251 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 L I F + Q + KQC E M + + +V G N LM Sbjct: 252 QVLTIGRTGKFITLNRVEHQ--RLKQCVE-CRMGNNIYTFDLPLV----GDFQVANALMA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKA 355 G+ A D ++L GR GK G +D Y P +++ Sbjct: 305 AGLAIATRASPDMVFRSLEKLQGAPGRLELVGK-----TEDGAPVYVD--YAHKPEALE- 356 Query: 356 AISVLSQISPHGEGRRIAVLG 376 VL + P +GR I V G Sbjct: 357 --QVLLSVRPFTQGRLILVFG 375 >gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] Length = 483 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 28/366 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+++DSR++ F A+ G DG FI A KGA V+ ++D V +PV Sbjct: 22 ISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAVAVLTSSDAVVET---DLPVI 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 D+ + K+A + T++A+TG+ GKT+ L ++ A IG+ Sbjct: 79 RADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSIASFLRQIWTATGLKAASIGTTGVV 138 Query: 144 ---NNHIGV-----PLTLARMPVDVDF-GIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192 N G P+ LA + ++ G+ M S G +F VR T + Sbjct: 139 SPSRNDYGTLTTPDPVALAELLASLEGEGVTHASMEASSHGIDQFRLDGVRLAAGGFTNL 198 Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSF 250 HL +E +AK +F L K +N DD + +A A G+ + + Sbjct: 199 GHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINTDDQWSG--RAIEVATGVGCDVRTV 256 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G++ + L++ + E+ EV+ VV G N L+ G+ + V Sbjct: 257 GRNGSL-LALKRLEHERERQVAEVKTPDGIQRVVLPLAGEFQMSNALVAAGLAIVTGTPV 315 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A++ L GR ++ G +D Y P +++ VL + P GR Sbjct: 316 KAALETLENLKGASGRLEKAGMTAG-GVPVFVD--YAHKPEALE---HVLRAVRPFTTGR 369 Query: 371 RIAVLG 376 I V+G Sbjct: 370 VILVMG 375 >gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] Length = 479 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 154/376 (40%), Gaps = 41/376 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G++ID R +AP F A G ++G DFI AV GA VV D Sbjct: 15 PNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAVAAGAVAVVARPDA-------- 66 Query: 83 IPVFGVDDVLGALNKLA---VAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 V G V A + A +AAR R AT +A+TG+ GKT+T EM Sbjct: 67 -KVDGAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNA 125 Query: 138 ACIGSY--NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVR 183 A IG+ + T P V F G+ G++H G ++ T + Sbjct: 126 ASIGTLGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLP 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 A T ++ HL +E +AK +F E ++ G + DD+ + + A Sbjct: 186 VKAAAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARAR 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ + + G++ A LR + Q + + + +V IG + A N L+ Sbjct: 246 DVR-VLTVGQAGEA---LRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAA 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V DV + L+ P GR +R A G +D Y P +++AA+ L Sbjct: 302 GLVIATGGDVALTLANLARLQPVRGRLERAAIA-RSGAPIYVD--YAHTPDAIEAALDAL 358 Query: 361 SQISPHGEGRRIAVLG 376 PH GR I V G Sbjct: 359 ---RPHATGRLILVFG 371 >gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium sp. 1_1_41FAA] gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium sp. 1_1_41FAA] Length = 432 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 104/431 (24%), Positives = 178/431 (41%), Gaps = 58/431 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H D +F + K G+ D V + I V +D++ Sbjct: 32 DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPY--NDFVKEVQKRGIKV--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + V L++K IIAITG+ GK+TT T +S + Y +IG L+ Sbjct: 79 VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131 Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 A + D+DF EL L + RP+I++I + P H+ ++ +E K Sbjct: 132 EALLHEKDLDFVSLELSSFQLENVENF----RPYISMIINMGPDHIERYNSFDEYYDTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + ++ N DD E ++ + K I S KSK A+ + K + + Sbjct: 188 NIAKNQDENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDF 243 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + ++ S++ G H +N L + IL D + + L V P E R + + Sbjct: 244 I-IEADKLSLK------GIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELF- 295 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N G I++S N S K AI I + G + +L+ Sbjct: 296 --FNYGDVKFINDSKATNVDSTKFAI--------QANKDSILICGGYDKGVDLAP----- 340 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLV-DGDV 446 LAE++ NI V+L G ++ L + + +H ET++ L ++ D D Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIETELKKVGYEASKIHKLETVENSLLDMKKRFTKDSDE 399 Query: 447 VVVKSSNSCGF 457 V++ S + + Sbjct: 400 VILLSPATSSY 410 >gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1056] Length = 459 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A + F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----AVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1] gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1] Length = 475 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 32/314 (10%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY-----NNHIGV 149 + AV ARL T + +TG+ GKT+T M+ +AL ++A G N H G Sbjct: 107 RPAVLARLMDDRTSLLVTGTHGKTSTTSMIIVALQHCGFDPSFAVGGDLGQAGTNAHHGS 166 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 T + D + E P +AV+T I HL + +E + Sbjct: 167 GSTFVAEADESDGSLLEY---------------SPDVAVVTNIEADHLDFYGTVENYTAV 211 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 + + ++ G + + DD L ++ ALGI+ + +G + D L W Q Sbjct: 212 FDQFVDRIKPGGALVVCVDDPGAAALAERTAALGIR-VLRYGSAPGLDATLLDWSQLGTG 270 Query: 270 SWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + E+ ++ + G HMA N L L + A++D + L+ F +G Sbjct: 271 AVAEISVRAEDRPRTMRLSVPGRHMALNALGALLAATQAGAEIDAVLDGLAGF---DGVR 327 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQ 386 +R+ G + D+ Y +P ++AAI+ L ++ G R +AV + ++ Sbjct: 328 RRFELVGTAGGVRVFDD-YAHHPTEVRAAITALRAVAEQTPGARTVAVF--QPHLYSRTE 384 Query: 387 SFHIDLAEVLSLYN 400 +F + A LS + Sbjct: 385 TFATEFAASLSTAD 398 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 141/357 (39%), Gaps = 25/357 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 I+P V+GI+ DSR + F A G H DG D+I A+ KGA V+ ++ Sbjct: 381 IIP-APVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPE 439 Query: 81 LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + + D+ + +A + + +TG+ GKTT L A +++ A Sbjct: 440 WQVHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSA 499 Query: 139 CIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH----------- 185 IG+ N + T P V+ L L ++R + V H Sbjct: 500 VIGTLGNGALEDLQATQNTTPGPVELQKM-LATFVLDDVRMVAMEVSSHGLDQGRVNGVA 558 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T I HL +E +AK ++F+ + +N DD F L G Sbjct: 559 FDVAVLTNITRDHLDYHLTMEAYQAAKRKLFD-WQTLSAAVVNADDPFGLALIEDLRKQG 617 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + S+G AD + ++V+ + ++ H +G N L L + Sbjct: 618 -KKVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCL 676 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A++A+S P GR + + G L+ Y P +++ A+ L Sbjct: 677 LVNEVALPAALQAVSGLVPVAGRMQMF----GGGDLPLVVVDYAHTPDALEKALHTL 729 >gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] Length = 498 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 147/371 (39%), Gaps = 28/371 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-L 81 P+ + I+ +S+ + P F AI+G DGH +I A+ +GA LV+ D+ + Sbjct: 25 PEIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYIGDAISRGAILVIYEHDLDEYQDDIM 84 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V +LG ++ +I +TG+ GKTT ML + IG Sbjct: 85 YVKVKNARHMLGTMSS-RFYGHPSEALSITGVTGTNGKTTITHMLKSIFQKDGRKCGLIG 143 Query: 142 SYNNHIGVPL--TLARMPVD-----------VDFGIFELGM---SHLGEIRFLTHLVRPH 185 + NN IG + R D V+ G L M SH ++ + + + Sbjct: 144 TINNQIGDEIIDNAGRTTPDSLEVQEIISEMVEAGCQNLVMEVSSHALDLDRVNGVAFDY 203 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + + + HL E AKA++F K I N DD + + L + Sbjct: 204 -GIFSNLTQDHLDYHKTFENYFEAKAKLFTYTSKANII--NCDDVWGKKLYDRCAQKKGV 260 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +YS+G + DF R K E + + + E+ G M N + + + Sbjct: 261 AVYSYGLNPECDFYARDMKYSIEGTRYTLVTKDGEEEIFISIPGEVMVYNSMAAIINALL 320 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ +AL+ EGR + R L+ F +ID Y +P S++ +L + Sbjct: 321 EGISIEVIKEALASMSGVEGRME--RLDLDTEFDIIID--YAHSPDSLE---RLLKSVKT 373 Query: 366 HGEGRRIAVLG 376 +G+ V G Sbjct: 374 MYDGKVYLVFG 384 >gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881] gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881] Length = 474 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 40/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + +A + + T+ IG N G L + + + Sbjct: 119 IAVAGTHGKTTTTSLTAAIMAEAGLDPTF-VIGGRLNSAGTNARLGQ-------SRYLVA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P A++T I H+ + G ++ + E L G + Sbjct: 171 EADESDASFL-HL-QPMSAIVTNIDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCV 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD L + + + + +G S++AD + +Q + V + +G+ +EV + Sbjct: 229 DDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLEVSLN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLI 342 G H N L + + + AD + I+ L+ F G G+R+ G TL+ Sbjct: 285 MPGRHNVLNALAAIAVSADEGADDEAIIRGLNNF---TGVGRRFDVQGEYHFEGGSATLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----- 397 D+ Y +P + A I + + P RR+A+L +Q + D EVLS Sbjct: 342 DD-YGHHPREVAATIDAIREGWPE---RRLAMLFQPHRYTR-TQDLYEDFVEVLSGVDVL 396 Query: 398 ----LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 +Y + G AL +L R + + + D L + S L DGD++V + + Sbjct: 397 LMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLASQLQDGDLLVTQGA 456 Query: 453 NSCG 456 + G Sbjct: 457 GNVG 460 >gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella tribocorum CIP 105476] gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella tribocorum CIP 105476] Length = 483 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 143/376 (38%), Gaps = 47/376 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A++G DG +I A+++GA +V TD A + LS+PV Sbjct: 21 ITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIV--TDCQAVLEDLSVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142 V +V +L A T++A+TG+ GKT+ + + + A IG+ Sbjct: 79 RVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIGTVGVV 138 Query: 143 --YNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N G P+ L R+ + V E L + R VR T Sbjct: 139 SPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAGAFT 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244 + H+ +E+ AK +F+ L L + D + + +A+ L I Sbjct: 197 NLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRVLTI 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 F + Q + KQC +E +++ K G N L+ G+ Sbjct: 257 GRKGHFITINRVEHQ--RSKQC-----IECRVENKIYTFDLPLAGDFQVANALVAAGLAI 309 Query: 305 ILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 D AL GR GK + A ID Y P +++ VL Sbjct: 310 ATGLSPDKVFSALETLQGAPGRLEFVGKTEKNAP-----VYID--YAHKPEALE---QVL 359 Query: 361 SQISPHGEGRRIAVLG 376 + P +GR I V G Sbjct: 360 LSVRPFTQGRLIVVFG 375 >gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] Length = 486 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 141/366 (38%), Gaps = 28/366 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR + P + F A+ G DG +I A+ +GA VV T A G+ PVF Sbjct: 27 IGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVAGTGTPAEAGA---PVF 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 + D L K A + R T++A+TG+ GKT+ + + A IG+ Sbjct: 84 AISDPRRFLAKAASSFYGRQPETMVAVTGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVV 143 Query: 144 ---NNHIGV-----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 G P++L ++ ++ D G+ M SH + R L V A T Sbjct: 144 APGRTEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQRRLDG-VELAAAAFTN 202 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + H+ +E ++K +F L G+ + + D + + + + G Sbjct: 203 LGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAAARKAGHDVRTVG 262 Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +N DF L++ + + EV + E+ G N L+ G+ Sbjct: 263 --RNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHVPLAGDFQIANALVAAGLAMSTGITA 320 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A AL GR G +D ++ + A +VL + P GR Sbjct: 321 KAAFSALERLQGASGR-LELVGQTKDGALAYVDYAHKPD-----ALANVLESVRPFTTGR 374 Query: 371 RIAVLG 376 + V G Sbjct: 375 VVVVFG 380 >gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4] gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella loihica PV-4] Length = 488 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 32/368 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------I 83 +++DSR I F A+ G DG D++ A+ +GA +++TD A G +S I Sbjct: 22 LTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNGLRI 81 Query: 84 PVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 F + L AL ++L V R R K +I +TG+ GKT+ +++ + K A +G+ Sbjct: 82 YFFQLQRQLSALASQLYVLGRDRIK--LIGVTGTNGKTSVTQLIAQLSDGLGKPAAVMGT 139 Query: 143 YNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAV 188 N + P+T+ R D D + + +S G ++ V +AV Sbjct: 140 LGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDVAV 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL ++ +AK +F +N DD G+ + Sbjct: 200 FTNLSRDHLDYHGSMDAYGAAKQRLFR-FSSLSHGLINLDDPVGRQWIQDKRCKGL-VGF 257 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + A ++ KQ S+ + ++ +G N++ LG + + Sbjct: 258 SIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLSGY 317 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + +S P GR +R+ +G ++D Y P +++ A+ L H Sbjct: 318 AMAQLLTQVSSLKPVAGRMERF--TTQEGVTLVVD--YAHTPDAIEQALRAL---RGHCR 370 Query: 369 GRRIAVLG 376 G+ V G Sbjct: 371 GKLWCVFG 378 >gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] Length = 477 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/323 (24%), Positives = 131/323 (40%), Gaps = 45/323 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F AI G +DGH FI A+ GA +VV D V I I Sbjct: 23 ITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANGANTIVVTED-VTEID--DINYI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +++ V K +I +TG+ GKTTT M++ L + IG+ Sbjct: 80 KVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLDSPCTNIGTNG 139 Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183 IG P T + ++ V+ +D + E L + L I F Sbjct: 140 TFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVECSSHGLYLHRLDGIDF------ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+ ++ H+ +E AK +FE +K N DD + KA+ Sbjct: 194 -DVAVLNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + Y+F +DF+ + + E+ K+++ V + N + + V Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300 Query: 304 SILTADVDTAIKALSVFHPKEGR 326 ++L ++ K+L F E R Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323 >gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] Length = 501 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/391 (22%), Positives = 164/391 (41%), Gaps = 49/391 (12%) Query: 18 SIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +G+ QG + G+++DSR + F A+ G G +FI +A++ GA ++ + Sbjct: 11 DLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTD-- 68 Query: 74 MVASIGSLSIPVFGVDDVL-----GALNKLAVAARLRSKAT---IIAITGSVGKTTTK-- 123 A+ ++ V D LA A L A ++ +TG+ GKT+ Sbjct: 69 --AAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASF 126 Query: 124 ----------EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM--- 169 E + I + ++ Y ++ P+TL R+ + + G+ M Sbjct: 127 CRQIWCELGYEAVNIGTTGVEGAYEAPLAHTTP--EPITLHRVLAECEVAGVTHAAMEAS 184 Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226 SH E R L HLV A + + HL + +E +AKA +F L + G +N Sbjct: 185 SHGLEQRRLDGVHLV---AAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVIN 241 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A G + + + G+ +D ++ + + + +G++ ++ + Sbjct: 242 IDDPKGPAMAEIARARG-QDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLN 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDES 345 +G +N+ + G+V +D D L H K RG+ A + G +D + Sbjct: 301 LMGGFQGENVALAAGLVIAAGSDPDRVFDTLR--HMKTVRGRMQLAATRRNGAAVFVDYA 358 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + + S + LS + PH GR +A++G Sbjct: 359 HTPDAVS-----TALSALRPHVMGRLVAIIG 384 >gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 149/375 (39%), Gaps = 39/375 (10%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR +AP AF A+ G DG FI A +GA + + + + Sbjct: 41 PAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQAV-----E 95 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 SIPV V + L+ A R T++A+TG+ GKT+ T+++ A +++ Sbjct: 96 TSIPVLAVKEPRRFLSIAASRFFGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155 Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRP 184 T + N G P++L ++ + V E L + R V+ Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELAGEGVTHAAMEASSHGLDQSRL--DGVKL 213 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 A T + H+ +E +AK +F+ L K + DD + + G Sbjct: 214 AAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQLLPKGAPAVIFADDPWSAQAIKAAADAGH 273 Query: 244 -IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++T+ + D+ L++ + + E+ + G+ EV G N L+ G Sbjct: 274 DVRTV-----GRKGDYLTLKRVEHFRHKQTAEIHIDGEIFEVDIPLAGDFQVANALVAAG 328 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + A+ AL GR G +D Y P +++ +VL Sbjct: 329 LAMSTGVEPKVAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLG 382 Query: 362 QISPHGEGRRIAVLG 376 + P GR + V G Sbjct: 383 SVRPFTTGRVVVVFG 397 >gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia canadensis str. McKiel] gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel] Length = 478 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 93/380 (24%), Positives = 154/380 (40%), Gaps = 45/380 (11%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L Q Q H+I G+S +S++I E FFA+KG DG+DFI A+ KGA LV Sbjct: 4 NLKQLFQQHNI--------KGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLV 55 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + + +I V V+D+ AL ++ + +IA+TG+ GK++ + Sbjct: 56 ITDNEKNTAINK----VIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQ 111 Query: 129 ALSSIKKTYACIGSY-------NNHIG-VP-------LTLARM-----PVDVDFGIFELG 168 S + + A IG+ +N I VP L+ ++ + +++ FE Sbjct: 112 LYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEAS 171 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227 L + R + V +IA T+ + HL E AK ++F L LN Sbjct: 172 SHGLDQTRLGENKV--NIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNS 229 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D E +KA + IK I K D Q+ + + ++ + Sbjct: 230 DIEEIEFIKAYLNKHNIKFITVGIK---GDLQITRINSSLKGQNIDFTFNNRKYSFNTPI 286 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+L+ D I +L P +GR ++ N F Y+ Sbjct: 287 IGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIE---NTNIFV----DYS 339 Query: 348 ANPASMKAAISVLSQISPHG 367 P +++ A+ L I G Sbjct: 340 HTPDALEKALLELKNIQVLG 359 >gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK405] gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK678] gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK160] gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1] gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK330] gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1058] Length = 459 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + + + A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASHTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis RP62A] gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis RP62A] gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU028] gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU045] Length = 494 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 39/326 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + V +G G+VVVN ++ ++ + +P Sbjct: 23 VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKGNVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + T +TG+ GKT+ M+ + + K A +G+ Sbjct: 83 -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184 + P T+A + VD + + +S LG +R V Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DD F + L Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ ++++G + A F + K+ + E S V +G N++ + Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAM 309 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326 V +++ I A++ P EGR Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335 >gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] Length = 508 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 91/409 (22%), Positives = 169/409 (41%), Gaps = 65/409 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD L + IK +++ KS ADF + S+++ + Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291 Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331 E H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--S 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393 >gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS) gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 497 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T G Sbjct: 17 IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76 Query: 82 S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 I F + + + L N+ R K II ITG+ GKTT +++ + + Sbjct: 77 KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134 Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ NN P+ + V EL + + H V Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194 Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +IA+ T + HL +E+ SAK +F K I LN DD + Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLF-STHKVKKIILNADDQY 245 >gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] Length = 491 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 90/384 (23%), Positives = 151/384 (39%), Gaps = 57/384 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 V+ ++ +S+ + FFAIKG DGH FI A++ GA VV++ A S P Sbjct: 20 VSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYPDV 79 Query: 85 VFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 F + D + + V+ R K +I +TG+ GKTT +L L K I Sbjct: 80 TFVISDNIRK-TQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGII 138 Query: 141 GS--YNNHIGVPLTLARMPVDV--------------DFGIFELGMSHLGEIRFLTHLVRP 184 G+ Y + + P + D+ + E+ + + R + Sbjct: 139 GTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGTVF-- 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSFFELLKAKSHA 241 H + T + HL +E K F+ ++ T G I N DD + + + Sbjct: 197 HGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKS 256 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + TI S+G+ KNA F++ S V ++G S ++GI + ++ Sbjct: 257 C-MNTI-SYGRDKNAQFRV---------SDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFN 305 Query: 302 IVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 I +I A D+D A P GR + + + F + D Y P + Sbjct: 306 IYNIAAAFSYLLRSGFDIDFLHHATEKLKPIRGRFE----TVEKDFLVVND--YAHTPDA 359 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ + L+QI + R I V G Sbjct: 360 IEKILMSLNQIKKN---RIIIVFG 380 >gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus 16] gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus 16] Length = 441 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 56/357 (15%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T ++ + + K +IGVP L + D D + EL Sbjct: 112 VIAITGSNGKSTVTDLTGV----VAKAAGLKVGVGGNIGVP-ALDLLAQDADLYVLELSS 166 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L L+ A ++ H+ + G+E AK IF + +N DD Sbjct: 167 FQLETTSSLSL----KAAAFLNLSEDHMDRYEGMEGYRQAKLRIF---DHADACIVNADD 219 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 KA +G K + F + +AD+ L +E E QG + + Sbjct: 220 ------KATYPDVGDKKLIEFSLNGSADYHL------AELQGQEFLFQGSAPIMPSSDLT 267 Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLID 343 +G H N L+ L ++S + D+ + AL K G +RC A NQG ++ Sbjct: 268 LVGRHNIANALVVLALLSQVDVDLSLGLDAL-----KSYSGLTHRCQVVADNQG-IKWVN 321 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +S N AS AA+S LS +G+ ++G + + + S+ LA VL+ N+ Sbjct: 322 DSKATNVASTLAALSGLSL-----QGKLYLLVGGVGKGADFSE-----LAPVLASLNVQL 371 Query: 404 VWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G ++L + Y + M+ + +I L GD+V++ S +C + Sbjct: 372 CCFGEDGSQFMSLHPS------AKYFDNMEAIVAWINPQLQAGDMVLL--SPACASF 420 >gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] Length = 493 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/377 (22%), Positives = 149/377 (39%), Gaps = 43/377 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83 V+ + +DSR + P F A+ G DG +FI A+++GA V+ V + G++ I Sbjct: 24 LVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEIID 83 Query: 84 --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV +D + L+ +A +I +TG+ GKTT +++ L + A +G Sbjct: 84 DVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAVMG 143 Query: 142 SYNN----HIGVPLTLARMPVDVDFGIFELGMSHL--------------GEIRFLTHLVR 183 + N ++ V++ + L H G ++ L+ Sbjct: 144 TTGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALSFAA- 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK E+F + I +N DD + A Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLELFTQHQCERAI-INVDDEV-----GHAWATQ 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMT 299 + + N +F+ W +S + +Q GK H IG A N+++ Sbjct: 254 LSNAIAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLA 313 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L D ++ P GR + ++ ++D Y P +++ A+ Sbjct: 314 FATLLSLGKDKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKALQA 369 Query: 360 LSQISPHGEGRRIAVLG 376 L H EG+ A+ G Sbjct: 370 L---RVHCEGQLWAIFG 383 >gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli 95/1000] gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli 95/1000] Length = 460 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 127/294 (43%), Gaps = 32/294 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA RL+ IAI+GS GKTTT +++ + K CI NH + + A Sbjct: 101 LAEIMRLKQG---IAISGSHGKTTTTSLISQIMIEAKLNPICIIG-GNHFNLK-SNAYCN 155 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 ++ ++ + E S +R + P +V+T I HL + +E++ A + + Sbjct: 156 LNSEYMVCEADESDGSFLR-----LSPVFSVVTNIDNDHLDYYGNVEKLRLAFLDFINKV 210 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQ 275 G FL +++ + L AKS + K YS+G S DF + K +E+ ++ + Sbjct: 211 PFYGCSFLCFENDVVKDL-AKSVS---KKYYSYGFSNEYDFYVDKSSIKTEEFKTYFKAY 266 Query: 276 LQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + K + E IG H N L ++ + L D DT KAL F EG G+R L Sbjct: 267 YKDKFLGEFELPLIGEHNVLNSLASIAVAYHLDIDTDTIKKALKTF---EGVGRRLN-KL 322 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDM 378 TL D+ Y +P +KA +S L PH R +L D Sbjct: 323 YDKEITLFDD-YGHHPTEIKATLSSLRNAYKDRRIIAIFQPHRYSRTQLLLNDF 375 >gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] Length = 501 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 38/351 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP + D L+A G+ P G I+ DSR + P F A G DG +I A+ Sbjct: 3 NPAFVLLDQLRAS-----GVRPAG----ITADSRRVGPGAVFAAWPGHVTDGRRYIASAI 53 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGK 119 ++GA V+ G L +P F V + LA + R ++ + +TG+ GK Sbjct: 54 ERGAAAVLWEEGDGFHPGELPVPGFAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGS----YNNHIGVPL-----------TLARMPVDVDFGI 164 TT + L AL + +G+ + + + L TLAR+ + Sbjct: 114 TTVTQWLARALGELGSRCGIVGTLGSGFPDQLSASLNTTPDALELHATLARL-LGEGAAA 172 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S +G + + V +AV T + HL ++ A AKA +F L Sbjct: 173 AAMEVSSIGLDQGRVNGVEFDVAVFTNLTRDHLDYHRTMDAYAEAKARLF-ALPGISRAV 231 Query: 225 LNYDDSFFELLKAKS-------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 +N DD+ F L +A+ +G + S + L + + S ++ L Sbjct: 232 INLDDA-FGLTQARRLVAAGQVDVIGYTCVASNADAVPGARVLVADRLQASPSGLQFSLH 290 Query: 278 --GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 G+ ++ + N+L +G + + V+ A+ + +P EGR Sbjct: 291 WAGRQSDLQVRMVAPFNVSNLLAVIGALVMRGVAVEEALAVVGRLNPPEGR 341 >gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] Length = 494 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 151/385 (39%), Gaps = 63/385 (16%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q V G++ DSR + P FFA G DG +F A+ +GA V+ SL+ Sbjct: 22 QTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALARGAVAVISE--------SLAP 73 Query: 84 PVFGVD--DVLGALNKLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 P V + LA+AAR + + ITG+ GKTTT + L + Sbjct: 74 PDLAARWIQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKTTTAYLTDSVLRAAGGV 133 Query: 137 YACIGSYNNHIG--VPLTLARMPVDVDF-----GIFELGMSH-----------LGEIRFL 178 A IG+ H+ V + P +D + G +H LG + Sbjct: 134 TAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRV--- 190 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF--LNYDDSFFELLK 236 H + H AV T + HL +E +AK +FEG F LN DD + L+ Sbjct: 191 -HGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAVLNTDDEYSRRLR 249 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 HA + Y G + AD + R + ++Q + + + IG N+ Sbjct: 250 L--HARTERLWY--GMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESPLIGKINVYNI 305 Query: 297 L------MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 L + G+ + A ++KA+ G+ R Q F ++D ++ + Sbjct: 306 LAACATGFSYGLAPEVVARGIASLKAVP--------GRFERVDEGQPFVVVVDYAHTDD- 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVL 375 +++ I+V ++P RR+ L Sbjct: 357 -ALRNVIAVARGLNP----RRVITL 376 >gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] Length = 501 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/378 (22%), Positives = 148/378 (39%), Gaps = 48/378 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + +AF A G DG ++ A+++GA ++V D G + + G Sbjct: 26 LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVEAD-----GLQAFDLSG-- 78 Query: 90 DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136 D + AL L A L + ++A+TG+ GKTTT L ALS + + Sbjct: 79 DSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138 Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180 A +G+ +GVP L R D + S +G + Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238 + +A+ T HL ++ AKA++F+ GL +N DD+ L A+ Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAA---VVNIDDAHGARLWAR 253 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++S A Q + E V G S+ + +G + N+L Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L ++ A++A + P GR ++ + + L+ Y P +++ A+ Sbjct: 313 VLATLRCLGLTLEQAVQACADLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368 Query: 359 VLSQISPHGEGRRIAVLG 376 L + +G+ V G Sbjct: 369 ALQPAARQRQGKLWCVFG 386 >gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 498 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T G Sbjct: 17 IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76 Query: 82 S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 I F + + + L N+ R K II ITG+ GKTT +++ + + Sbjct: 77 KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134 Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ NN P+ + V EL + + H V Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194 Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +IA+ T + HL +E+ SAK +F K I LN DD + Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245 >gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] Length = 474 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 154/371 (41%), Gaps = 43/371 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S +S++I +AFFAIK +G+DFI A++KGA LV+ + + + V Sbjct: 14 VKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKK-----NTTNKVI 64 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142 V+D+ L++ + T+IA+TG+ GK++ + S I + A IG+ Sbjct: 65 FVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKAASIGTIGVE 124 Query: 143 ------YNNHIGVPLTLARMPVD----------VDFGIFELGMSHLGEIRFLTHLVRPHI 186 +N IG T + +D+ FE L + R ++ ++ Sbjct: 125 VFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRLGD--LKVNV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T+ + HL E AK ++F + L K G LN D E +K L Sbjct: 183 ACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSD---IEEIKFIKDYLDKH 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I N + ++ K + + K+ + IG A N+L+ V Sbjct: 240 KIKYLCVGANGNCKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAGLSVYY 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D I AL+ +GR +R +N+ T I Y P +++ A++ L I Sbjct: 300 TSFDFSKVINALTKVKAVKGRMER----VNR---TNIFIDYAHTPDALEKALTELKNIKA 352 Query: 366 HGEGRRIAVLG 376 G G+ + G Sbjct: 353 KG-GKLSVIFG 362 >gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella bacilliformis KC583] gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella bacilliformis KC583] Length = 483 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 133/324 (41%), Gaps = 37/324 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS +SR I P F A++G DG +I A+++GA +VV + D VA +LS+PV Sbjct: 21 ITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE--NLSVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V DV N AAR S T++A+TG+ GKT+ + + A IG+ Sbjct: 79 QVSDVRH--NLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIGTVG 136 Query: 144 -----NNHIGV-----PLTLARMPVDV-DFGI----FELGMSHLGEIRFLTHLVRPHIAV 188 N G P+ L R+ ++ D G+ E L + R V A Sbjct: 137 VVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRL--DGVNLAAAA 194 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHAL 242 T + H+ + +++ AK +F+ L + DD + + + +A AL Sbjct: 195 FTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRAL 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I F K + R+ KQ ++E +++ +G+ N LM G+ Sbjct: 255 TIGRKGQFIKINR--IEHRRSKQ-----YVECRIENDVYTFDLPLVGHFQVTNALMAAGL 307 Query: 303 VSILTADVDTAIKALSVFHPKEGR 326 + D +L GR Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGR 331 >gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK1059] Length = 459 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +E A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 498 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T G Sbjct: 17 IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIF 76 Query: 82 S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 I F + + + L N+ R K II ITG+ GKTT +++ + + Sbjct: 77 KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134 Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ NN P+ + V EL + + H V Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194 Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +IA+ T + HL +E+ SAK +F K I LN DD + Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245 >gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] Length = 508 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 69/411 (16%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 +V + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 IVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKT 220 E SH L R + V AV T I HL I+ + K +F + + Sbjct: 187 LE-STSHGLDLETARLID--VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDA 243 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G +N DD L + +K +++ KS ADF + S+++ + Sbjct: 244 GFGVINLDD-----LYSSDFKNAVKKSFTYSLKSSKADFFV---------SFIDEKTDST 289 Query: 280 SMEVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKR 329 E H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 290 RFEFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDS 349 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 350 IN--LGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 141/362 (38%), Gaps = 58/362 (16%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 K G+ N MV L++P++ ++L N+ A +I ITGS GKTTT Sbjct: 81 KNPGIPYSNP-MVQRAQELNLPIYTDIELLAWFNQ----------AEVIGITGSNGKTTT 129 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 +L L K+ N IG+P LT ++ D + EL L I Sbjct: 130 TSLLGEILQGAKELTGKTEVAGN-IGIPALTASQGLSSQDRLVLELSSFQLMGIETF--- 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RPHIA I + P HL IE +AK I + + LNYD KAK + Sbjct: 186 -RPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKNQGPDDYLLLNYDQEIL-WQKAKESS 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHHGIGYHMAQNMLM 298 I I S ++ + W E + M E L+ + + + G H QN L+ Sbjct: 244 AQIIPI-----SIESELEKGAWYNEKEGTLMWGSETVLKREDLFLP----GKHNVQNALV 294 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES--YNANPAS-MKA 355 L I +L + A S FH G ++R F I E YN + A+ +A Sbjct: 295 ALAIAKLLGVSNASIQTACSQFH-----GVKHRIQ----FVDQIKERRFYNDSKATNNEA 345 Query: 356 AISVLSQISP----------HGEG-----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +I+ L G G + + + + MGE F IDLA + Sbjct: 346 SITALRSFKEPLVWIAGGLDRGNGVKELLKELGQVHALVAMGETQDKF-IDLANKAGISQ 404 Query: 401 IS 402 IS Sbjct: 405 IS 406 >gi|307637428|gb|ADN79878.1| UDP-N-acetyl muramoyl alanyl-D-glutamyl-2,6-di amino pimelate--D-alanyl-D-alanine ligase [Helicobacter pylori 908] gi|325996018|gb|ADZ51423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Helicobacter pylori 2018] gi|325997613|gb|ADZ49821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Helicobacter pylori 2017] Length = 493 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] Length = 508 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 89/408 (21%), Positives = 167/408 (40%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V + D+ +++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 IVCSRDVDFYSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 125 MLTIAL--------------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + + L S IK Y + I L+ + + + I Sbjct: 128 HIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-NMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDFYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDFTRFE 292 Query: 283 VVHHGIGYHMAQNMLMTLGIVS----------ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y N+L + + + IL +D+ + L +GR Sbjct: 293 FYHKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393 >gi|70726183|ref|YP_253097.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus haemolyticus JCSC1435] gi|109892743|sp|Q4L784|MURC_STAHJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|68446907|dbj|BAE04491.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus haemolyticus JCSC1435] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPAS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ASA + ++K I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDIDDVASAFQSMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD LKA IY +G +KN D + + + +V + G+ + Sbjct: 201 IAWGDDDHLRQLKADV------PIYYYGLNKNDDIYADNIQITDKGTQFDVYVNGEYYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H QN L + I + DV+ +AL F G KR N L+ Sbjct: 255 FLSPQYGDHNIQNALAVIAISYLEKMDVNNIKEALETF----GGVKRRFNETNVANQVLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I +++ PH R A L + LS++ H+ L Sbjct: 311 DD-YAHHPREISATIETARKKYPNKDIVAVFQPHTFSRTQAFLDEFAT--SLSKADHVYL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] Length = 483 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 144/368 (39%), Gaps = 32/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAKVIVCEKDLEELSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +A II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P L L ++ D VD+ + E+ L R + V A+ Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K +F+ + + +N DDS+ E K ALG K Y Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G KN D + S + + + + + G + N L ++G + Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + T +AL+ GR + N G+ ++D Y P ++ ++L+ + Sbjct: 313 PLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367 Query: 369 GRRIAVLG 376 GR I+V G Sbjct: 368 GRLISVYG 375 >gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 156/371 (42%), Gaps = 39/371 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G +ID R +AP F A G +G DFI A+ GA VV + V G++ IP Sbjct: 24 VTGFAIDHRKVAPGTVFGAFPGARVNGEDFIPAAIAAGAVAVVARPEAVVE-GAVHIPDA 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 + ++A T++A+TG+ GKT+T EM A IG+ Sbjct: 83 ---EPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGTLGVT 139 Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + I +T P V F G+ G++HL G ++ + Sbjct: 140 TADESISTGMT---TPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRSEGPVVAAGAF 196 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFE--LLKAKSHALGIKT 246 T ++ HL +E +AK +F E + + G + DD + + + A+ AL + T Sbjct: 197 TNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALRVLT 256 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G++ +L K +++ +G++ ++ IG + A N L++ G+V Sbjct: 257 VGERGET----IRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLAT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISP 365 D AL P RG+ R A+ + G +D Y P ++ AA + L P Sbjct: 313 GGDPTQTFDALGRLQPV--RGRLERAAITRTGAPVYVD--YAHTPDAITAACAAL---RP 365 Query: 366 HGEGRRIAVLG 376 H EGR I V G Sbjct: 366 HVEGRLIVVFG 376 >gi|317178903|dbj|BAJ56691.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F30] Length = 493 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +K+A L+ +IAITGS GKT+TK L L + +A S N +G+ + Sbjct: 158 AKDKIASLKNLK----VIAITGSFGKTSTKNFLLQILQTTFNVHANPKSVNTLLGLANDI 213 Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D + I E G + G+I+ +T L+ PH+AV+ + HL F +E I KAE Sbjct: 214 NQNLDDRSEIYIAEAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAE 273 Query: 213 IFEG--LEK 219 + + LEK Sbjct: 274 LLDSKRLEK 282 >gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis] Length = 483 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 133/324 (41%), Gaps = 37/324 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS +SR I P F A++G DG +I A+++GA +VV + D VA +LS+PV Sbjct: 21 ITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE--NLSVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V DV N AAR S T++A+TG+ GKT+ + + A IG+ Sbjct: 79 QVSDVRH--NLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIGTVG 136 Query: 144 -----NNHIGV-----PLTLARMPVDV-DFGI----FELGMSHLGEIRFLTHLVRPHIAV 188 N G P+ L R+ ++ D G+ E L + R + A Sbjct: 137 VVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRL--DGINLAAAA 194 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE-----LLKAKSHAL 242 T + H+ + +++ AK +F+ L + DD + + + +A AL Sbjct: 195 FTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRAL 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I F K + R+ KQ ++E +++ +G+ N LM G+ Sbjct: 255 TIGRKGQFIKINR--IEHRRSKQ-----YVECRIENDVYTFDLPLVGHFQVTNALMAAGL 307 Query: 303 VSILTADVDTAIKALSVFHPKEGR 326 + D +L GR Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGR 331 >gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] Length = 483 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 145/367 (39%), Gaps = 32/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + DSR I + F AI+G + DGH FI A++ GA ++V + D + I V Sbjct: 23 VNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENGAKVIVCSKDTEINESCTYIKVE 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 L A+ +K +I ITG+ GKTT+ M+ L IG+ N Sbjct: 83 NTRKAL-AIIASNFYGNPSNKIKLIGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANF 141 Query: 147 IG---------VP--LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 IG P L L M ++++ I E+ L R + + V T Sbjct: 142 IGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIMEVSSHSLSLDR--VYGLEFSQGVFT 199 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL E AK +F + + +N DDS+ E + +K YS Sbjct: 200 NLTQDHLDFHKTFENYYEAKLSMFNNAKNS---IINIDDSYGERMLKDIPNTNLKVTYS- 255 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + AD + + ++ +G ++ + G + N L + G + Sbjct: 256 -TERQADLVANNIVNHARGAEFDLIYKGTTIHINLSIPGIYNVYNALCSAGACLEEEISI 314 Query: 311 DTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + L +V P GR + N GF ++D Y P ++ ++L+ +G Sbjct: 315 EKVKEGLENVVVP--GRCENVTKKYNLGFDVIVD--YAHTPDGLE---NILNTAKDFTKG 367 Query: 370 RRIAVLG 376 R I+V G Sbjct: 368 RLISVFG 374 >gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 477 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 34/357 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + F ++L+ I S + + ++ +S+ + AF AIKG DGH +I A++ Sbjct: 1 MLKFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIEN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 GA L++ D+ G I V+D AL +++ ++ K TI+++TGS GKTT Sbjct: 61 GASLIIHTEDIAYKEG---ISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGS---------YNNHIGVPL-----TLARMPVDVDFGIFEL 167 T ++ L I A IG+ Y P+ L + +D + L Sbjct: 118 TSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLSL 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + + + V T ++ HL ++ AK +F+ + T N Sbjct: 178 ESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQAKHT---VANI 234 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + K+ L TI ++NAD++ + + EV K +E + + Sbjct: 235 DDPY----GKKAKELYPNTITYGINNENADYRAENVVKKDGKVSYEV----KGVEFILNT 286 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLID 343 I + N L +V + A ++ A+ F+ G R+ N G +ID Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFN---GVASRFEYMENNLGLNIIID 340 >gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] Length = 508 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 65/409 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD L + IK +++ KS ADF + S+++ + Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291 Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331 E H G+ Y +N++ L +VS IL D+ + L +GR Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD--S 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393 >gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 500 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 148/367 (40%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ AF IKG DGH++I A+Q GA LVVV+ S I Sbjct: 38 ITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGARLVVVDEFFDTSKIEGKIDYI 97 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ A +I +TG+ GKT+T M+ L + + IG+ Sbjct: 98 KTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTTFMIKSILEANGQKVGLIGTIK 157 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 158 NMIGSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLEL-FRVYACDFDVGVF 216 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E SAK ++F G+ K + N DDS+ K + Sbjct: 217 TNLTQDHLDFHGTMENYFSAKLKLF-GMSKKRVV--NADDSW-----GKRIIEMYPDCIT 268 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A+ + K ++ ++ K ++ + G N L +L + Sbjct: 269 YAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNIPGLFSIYNSLAAAACCILLGIE 328 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +DT K L GR + NQ F +ID Y P + ++++ ++ +G Sbjct: 329 LDTIKKGLEELKAVPGRFEIVES--NQKFTVVID--YAHTPDGL---LNLMKTVNEVADG 381 Query: 370 RRIAVLG 376 R++ + G Sbjct: 382 RKVLLFG 388 >gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] Length = 476 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 149/373 (39%), Gaps = 44/373 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F AI G +GHDFI A+ +GA LV++ + I V Sbjct: 12 IKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGA-LVIICEKLPNDI------VN 64 Query: 87 GVDDVLGALNKLAVA-------ARLRSKATIIAITGSVGKTT---------TKEMLTIAL 130 GV V A +K A+A K ++ +TG+ GKTT TK + L Sbjct: 65 GVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAGFKVGL 124 Query: 131 SSIKKTYACIGSYNNHIGVP--LT----LARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183 S K Y+ P LT LA M + V++ E+ + + R T LV Sbjct: 125 LSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHR-TTGLVF 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + T ++ HL S E K F+ L + N DD E++ + A Sbjct: 184 AG-GIFTNLSHDHLDYHSSFAEYRDVKKRFFDELPASAFALTNVDDKNGEVMLQNTKA-- 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y++G AD++ Q E + + L+ EV IG A N+L Sbjct: 241 --KQYTYGLKNYADYK----AQILENQFTGLLLKINDQEVWSRLIGSFNAYNILAIYAAA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + +K +S H GR +Y + + ++D Y P ++K + ++ I Sbjct: 295 ELLGLETLENLKFISELHSVNGRF-QYFISPEEKITAIVD--YAHTPDALKNVLDTINAI 351 Query: 364 SPHGEGRRIAVLG 376 E I V+G Sbjct: 352 RTKNE-ELITVVG 363 >gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 487 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/342 (24%), Positives = 142/342 (41%), Gaps = 31/342 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L++ IQ + + V ++ DSR + P F AIKG DGHD+ A +GA + Sbjct: 5 ELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQGAVAI 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + ++IPV V A+ +LA K +I ITG+ GKTTT ++ Sbjct: 65 VSE-----RLLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKTTTTTIV 119 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L+ + + IG+ IG + +R P + F M G + + V Sbjct: 120 RDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEG-VEDVIMEVSS 178 Query: 185 H-------------IAVITTIAPAHLSNFSGIEEIASAK----AEIFEGLEKTGTIFLNY 227 H +A T + HL E A AK A++ + L LN Sbjct: 179 HGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKVAVLNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD L + + A + ++G + AD Q + Q +++ + Q +++E+ Sbjct: 239 DDEISHLFEMMTGA----RVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAVELTVQF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 IG N+L+ GI+ + + A++ P +GR +R Sbjct: 295 IGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQR 336 >gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parauberis NCFD 2020] gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parauberis NCFD 2020] Length = 452 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160 A L S+A I AITGS GKTTT M+ L+ ++ G +IG P + + VD Sbjct: 106 AYLISEAPIFAITGSNGKTTTTTMIADVLNHAGQSALLSG----NIGFPAS--EVAVDAK 159 Query: 161 --DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D I EL L G +F RPHIAVIT + P H+ EE +AK I + Sbjct: 160 ENDRLIMELSSFQLMGVDQF-----RPHIAVITNLMPTHIDYHGSFEEYVNAKWNIQNNM 214 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + LN D L K+ A TI F K D C + ++ + Sbjct: 215 SDKDFLILNGDQEISYDLANKTKA----TILYFSSQKEVD-----GAYCLDG---KLYFE 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G+ M+ G+ G H +N L T+ + + D D+ + L+ F Sbjct: 263 GEYIMDADQIGVPGLHNVENALATIAVAKLANVDNDSIKETLASF 307 >gi|152992426|ref|YP_001358147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum sp. NBC37-1] gi|151424287|dbj|BAF71790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum sp. NBC37-1] Length = 485 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 37/287 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167 T++ IT S GKT+ K + L + +TYA S N GV + +P D + + E+ Sbjct: 154 TVVGITASYGKTSIKNYIEHLLKAKYRTYATPRSVNTLGGVMKDINDDLPEDTEVYVVEM 213 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G G+I +T V P V+ I PAH+ F +E I + K EI + Sbjct: 214 GARGEGDIAEITTFVNPQYVVVGKIGPAHIEYFKTMENIRNTKMEILQS----------- 262 Query: 228 DDSFFELLKAKSHALGI----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 L +A H + K I+ FG +N D ++ E +++ + Sbjct: 263 ----HRLKEAWIHESAMVKPEKNIHIFGTGENLD--MKTGLPAPEYLIKDIEATLDATSF 316 Query: 284 VHHGIGYHM-------AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G+ Y A N+ + + L + + LS + R +R ++ Sbjct: 317 TLDGVRYSASILGAFNAMNLAAAVLVAKKLGLSDEEIQQGLSTLKAVDHRLQR----IDA 372 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G ++D+S+N N M A+ + S + GR++ + + E+ + Sbjct: 373 GGKVILDDSFNGNIDGMMASFDLASTYA----GRKVVITPGLVEVDD 415 >gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] Length = 486 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 137/362 (37%), Gaps = 38/362 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85 ++ + DSR ++ F AIKG DGHDF+ + GA +V T V + G I V Sbjct: 24 ISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAKAAIVETLPEVIAEGVTYIKV 83 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 LG VA+ SK ++ +TG+ GKTT +L + + Sbjct: 84 ANSATALG-----VVASNFYHNPSSKLKLVGVTGTNGKTTVCTLLYKLFKKLGYNVGLVS 138 Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI-------- 186 + N+I VP T P + M G E F+ +H V H Sbjct: 139 TVENYINDLVVPAT-HTTPDQIALNQLLNRMVDAGCEYCFMEVSSHSVVQHRIDGLEFAG 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T I HL + AK F+ L N DD ++ + A K Sbjct: 198 GVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSKAFALTNVDDRNGNVMLQNTRAH--KK 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y+ ADF+ + E + + L MEV +G A N+L G +L Sbjct: 256 TYALNAV--ADFKAK----IIENLFSGLHLDIDGMEVYFRLVGSFNAYNLLAVYGTALLL 309 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D + LS+ EGR Y A N+ ++D Y P +++ +S + IS Sbjct: 310 EQDRTKVLTVLSMLTGAEGRFD-YIIAPNK-VIGIVD--YAHTPDALRNILSTIENISSG 365 Query: 367 GE 368 E Sbjct: 366 TE 367 >gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Delftia acidovorans SPH-1] gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans SPH-1] Length = 509 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 85/382 (22%), Positives = 146/382 (38%), Gaps = 52/382 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P +AF A G DG + A+++GA +V V + G F + Sbjct: 30 LQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEAQGVEAFG------FSGE 83 Query: 90 DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSIK----KT 136 + AL L A L ++ ++A+TG+ GKTTT L AL+ +K Sbjct: 84 HI-AALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTTTAWWLAHALAQVKLQERSG 142 Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180 A +G+ +G+P + R D + S +G + Sbjct: 143 CALVGTLG--VGIPPAMESTGMTTPDPVRLQRAFREYADAGLAACAIEASSIGIVEHRLD 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFEL 234 R +A+ T HL ++ AKA +F+ GL+ +N DD+ + Sbjct: 201 GTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFDWPGLQAA---VVNVDDAHGARLWAT 257 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+++ + ++S A Q + +E V G S+ + +G + Sbjct: 258 LQSRKQPAALD-VWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRMHTRMVGQYNVS 316 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L L + L +D A+ A P GR ++ + Q L+ Y P ++ Sbjct: 317 NLLGVLAALRCLGLTLDQAVAACVHLEPVPGRMQQ----IVQPGQPLVAVDYAHTPDALD 372 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 A+ L + GR V G Sbjct: 373 KALRALRPAAEQRRGRLWCVFG 394 >gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium phytofermentans ISDg] gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium phytofermentans ISDg] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 122/304 (40%), Gaps = 47/304 (15%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V + D V + S IP+ G +V A N SK I AITG+ GKT+T ++ Sbjct: 79 VPTDLDYVKELKSAEIPIIG--EVELAYN--------FSKGKIAAITGTNGKTSTTTLVG 128 Query: 128 IALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + K+ +G +IGVP T + + + + E+ L I RP + Sbjct: 129 EIMKTYYKSVFVVG----NIGVPYTQMVKNTENDSVTVAEMSSFQLETIETF----RPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + I I P HL+ +E AK I + K T LNY+DS+ + + A T Sbjct: 181 SAILNITPDHLNRHHTMEAYIEAKVNITKNQTKEDTCILNYEDSYLRTVSGRIPA----T 236 Query: 247 IYSFGKSKNADFQL----------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I F + + L K+C E+Q+ IG H +N+ Sbjct: 237 ILWFSSVRELERGLFLRENHIIYRDDEKECVVCDVNELQI-----------IGKHNYENV 285 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +GI L +D +A++ F E R + ++ ++S NP + A Sbjct: 286 MAAVGIAIALKVPMDFIREAVTKFRGVEHRIEYVTTKRGVKYY---NDSKGTNPDASIQA 342 Query: 357 ISVL 360 I + Sbjct: 343 IKAM 346 >gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 38/244 (15%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + G++ DSR AP F A+ G H DG ++ A Q GA +V + + ++I L I Sbjct: 26 QDTILGLAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGA-VVALGAPLPSAI-DLPI 83 Query: 84 PVFGVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 P V+DV AL LA A AR + I +TG+ GKTTT +++ + + Sbjct: 84 PYIEVEDVRTALADLACAFYGFPAR---ELCTIGVTGTDGKTTTSNIISTLFDAAGRRTG 140 Query: 139 CIGSYNNHIG--------VPLTLARMPVDVDF--GIFELGMSHLGEIRFLTH---LVRPH 185 + + N + TL + + +F + E+ +H I +H L R Sbjct: 141 MMTTANFKLNGQEWANATRQSTLEALEIQ-EFLRKMVEMQATH-AVIESTSHGLELQRVR 198 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--------TGTIFLNYDDSFF 232 + V+T I HL ++ AKA +FE L+ LN DDS + Sbjct: 199 GCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDSSY 258 Query: 233 ELLK 236 E+LK Sbjct: 259 EVLK 262 >gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CFN 42] gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CFN 42] Length = 506 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 154/372 (41%), Gaps = 32/372 (8%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR++ P AF A+ G DG FI A +GA + + + + A Sbjct: 41 PAGLLDISGLSSDSRNVEPGNAFVAVTGTKADGAGFIADAAGRGAAVAIASQPVDA---- 96 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 +IPV V + L+ A R T++A+TG+ GKT+ T+++ A +++ Sbjct: 97 -AIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155 Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184 T + N G P++L ++ ++ D G+ M SH L + R V+ Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + H+ +E +AK +F+ L G + + D + ++ A Sbjct: 214 SAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSPQAVQAAADAG 273 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + G+ K L++ + + E+ + + EV G N L+ G+ Sbjct: 274 HDVRTVGR-KGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAM 332 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A+ AL GR G +D Y P +++ +VL+ + Sbjct: 333 STGVEPKAAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLNSVR 386 Query: 365 PHGEGRRIAVLG 376 P GR + V G Sbjct: 387 PFTTGRVVVVFG 398 >gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM 16795] gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM 16795] Length = 248 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 14/256 (5%) Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI ++ T+ +N DD LK K +KT FG K+ ++ + Sbjct: 2 EITTNFDENSTLIVNGDDDMLATLKGKDLKYNLKT---FGFEKDNTIYCVDFEMNDNDTI 58 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V + K + +G H N + + + L +D L + R Sbjct: 59 FNVMIDNKIEKFYIPTVGEHNIYNAMAAILVGKTLNLTLDEIRNGLETLEITKSR----M 114 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + +T+ID YNA+ SM+AA+ VL++ RR+A+LGD+ EMG ++ H Sbjct: 115 DVIKNDNYTVIDSVYNASVDSMRAALKVLNRYKT----RRVAILGDIFEMGSFAEEGHKQ 170 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVV 448 + + S + + K+AL ++ +VH+ T + ++ L GD ++ Sbjct: 171 VGKDASENADVIIAIGKDAEFISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDTIL 230 Query: 449 VKSSNSCGFYRLINLL 464 VK+S ++ L Sbjct: 231 VKASRGMHLEEVVEFL 246 >gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] Length = 495 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 153/379 (40%), Gaps = 47/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 + G+++DSR + P F A+ G G +FI +A++ AG ++ + + + Sbjct: 19 ITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTDAKGAEIAADELAASD 78 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KT 136 V D AL + A T+IA+TG+ GKT+ + T Sbjct: 79 AAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCRQIWEELDLPGVNLGT 138 Query: 137 YACIGSYNNHIG----VPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 G++N+ + P+TL R M GI + M SH + R L ++ Sbjct: 139 TGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGLDQRRLDGVI------ 192 Query: 189 ITTIAPAHLSNFS--------GIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239 +A A SNFS E AK +F+ L + G +N DD + + A Sbjct: 193 ---LAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGKEVAAIC 249 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297 A G + I G ++ D +LR Q + + ++ + QG++ + IG A+N+L Sbjct: 250 TARGQEVI---GVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAENVL 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + G+V AD D L GR G +D Y P +++ A Sbjct: 307 LASGLVIAAGADPDEVFDTLQYLTTVRGR-MELAATRQSGAAVFVD--YAHTPDAVETA- 362 Query: 358 SVLSQISPHGEGRRIAVLG 376 L + PH GR I ++G Sbjct: 363 --LRAMRPHVMGRIIVIVG 379 >gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] Length = 496 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 54/327 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------------------N 71 +++DSR + + F A+KG DG FI +A+++GA +++ N Sbjct: 24 MTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFN 83 Query: 72 TDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 D A +S+P + ++ GAL K T+ ITG+ GKTTT ++L Sbjct: 84 LDRTACCKVVSVPRLPKLLSEIAGALYH-----NPSHKLTLAGITGTNGKTTTAQLLAQW 138 Query: 130 LSSIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIF-ELG-------MSHLGEI 175 + + A +G+ N + V T + + + + F ELG +S G Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FEL 234 +F + +A+ T ++ HL + +EE A AK +F L + +N DD E Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV-INADDEIGREW 257 Query: 235 LKAKSHALGIKTI------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 L +A+ + T + F K+ F L+ E SW +L + I Sbjct: 258 LTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRL-------I 310 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIK 315 G N+L + L D+ +K Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQELVK 337 >gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 140/372 (37%), Gaps = 39/372 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A++G DG +I A+++GA +V TD A + L +P+ Sbjct: 21 ITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIV--TDCHAVLEDLPVPIL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 V +V +L A T++A+TG+ GKT+ + + + A IG+ Sbjct: 79 RVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASIGTVGVV 138 Query: 144 ---NNHIGV-----PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N G P+ L R+ + V E L + R VR T Sbjct: 139 SPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRL--DGVRLTAGAFT 196 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE------LLKAKSHALGI 244 + H+ +G+E+ AK ++F+ L L + D + + +A+ L I Sbjct: 197 NLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRRVLTI 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 F + Q + KQC +E +++ G N LM G+ Sbjct: 257 GRKGQFITINRVEHQ--RSKQC-----IECRVENNIYTFDLPLAGDFQVANALMAAGLAI 309 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 AL GR + N + Y P +++ VL + Sbjct: 310 ATGVSPRKVFSALETLQGAPGRLEFVGKTENNAPVYI---DYAHKPEALE---QVLLSVR 363 Query: 365 PHGEGRRIAVLG 376 P +GR I V G Sbjct: 364 PFTQGRLIVVFG 375 >gi|149194595|ref|ZP_01871691.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2] gi|149135339|gb|EDM23819.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Caminibacter mediatlanticus TB-2] Length = 469 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 37/291 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 II ITGS GKT+ K + L K Y S N G+ L + +P D + I E G Sbjct: 155 IITITGSYGKTSIKNFVYQLLKDDFKAYKTPRSVNTIKGIILDINTSLPEDTEIYITEAG 214 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 G+I+ + + H A++ I P HL F IE I K E+FE +YD Sbjct: 215 ARERGDIKTIVKFLENHYAILGKIGPQHLEYFKTIENIEKTKLEVFESNNLIKG--FSYD 272 Query: 229 DSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + E ++K K IK A + +W ++++ G+ + Sbjct: 273 IPYRENVIKIKDKIHNIK----------ATLEKLEW---------DLEINGELHHFECNI 313 Query: 288 IGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G A N ++L I L D++T + + P R ++ + G +ID+S+ Sbjct: 314 LGEFNAIN--ISLAIYQALEFLDIETIKEKVLKLEPIPHRLQK----IEVGGKIIIDDSF 367 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 N N M + + I H GR+I V + E E + +I LA+ ++ Sbjct: 368 NGNIEGMLKSFKL---IKTH-PGRKIIVTPGIIEGNE---NLNIKLAKAIN 411 >gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 497 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 157/373 (42%), Gaps = 46/373 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F AIKG ++DGH I V +GA L++V + A+ ++ VD Sbjct: 33 DSRQVEAGACFIAIKGENFDGHQAIAEVVAQGAKLIIVEQ-LPANYQTIPANFVLVDSSF 91 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147 A LA K ++A+TG+ GKTTT M++ L+S+ IG+ + + Sbjct: 92 RAQAILANKFYQEPSRKLKVVAVTGTNGKTTTSSMISDLLTSLDHKTGKIGTLHYKVADT 151 Query: 148 ---GVPLTLARMPVDVDFG-IFELGM--------SH---LGEIRFLTHLVRPHIAVITTI 192 V T + + F + E G SH LG + + A+ T + Sbjct: 152 YYPAVNTTPNALHLQALFAEMLERGCQDAVIEASSHALSLGRLWY----TDVDCAIFTNL 207 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---------LNYDDSFFELLKAKSHALG 243 HL ++ A AK+ +F L G F +N DD ++E++ A++ A Sbjct: 208 TREHLDFHKTMDNYAYAKSLLFSQL---GQAFHQGRPRLAIINKDDPYWEVM-AQATAAD 263 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T + A + K+ + Q +E+ G Y+++ + L + Sbjct: 264 LVTYSLVDEEATAYASQIQNKETGLAFKLHFNDQVFELELPMRG-HYNVSNYLAAFLCLA 322 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 DV ++A F GR + ALN+ F ++D ++ ++ A V+ ++ Sbjct: 323 CYYEIDVANILRATKDFKGVSGRME--VLALNKDFDVVVDFAHTSD-----ALERVMQEL 375 Query: 364 SPHGEGRRIAVLG 376 H +GR +A++G Sbjct: 376 VSHKQGRLLALMG 388 >gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] Length = 508 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 65/409 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD L + IK +++ KS ADF + S+++ + Sbjct: 246 GVINLDD-----LYSSDFKNAIKKSFTYSLKSSKADFFV---------SFIDEKTDSTRF 291 Query: 282 EVVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYR 331 E H G+ Y +N++ L +VS IL D+ + L +GR Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMD--S 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 350 INLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393 >gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida GB-1] gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1] Length = 496 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 90/402 (22%), Positives = 162/402 (40%), Gaps = 46/402 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG + I A+ +GA V + +P+ Sbjct: 18 LIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAVAYEEQGATVLPLTEVPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++ L+ VA R + + ++ +TG+ GKT+ +++ AL + + IG Sbjct: 78 IPVKGLIAQLSD--VAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGM-----------SHLGEIRFLTHLVRPHI 186 + L R+ P+ V +++L SH E + L I Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALEQGRVAAL-EFDI 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHAL 242 AV+T ++ HL +E +AKA++F +N DD+F L A + Sbjct: 195 AVMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDAFGRRLAADFARRPSVD 253 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQN 295 I T +N D L C E ++ + V QG+ + + +G N Sbjct: 254 HIDTRLLSYSLENPDASL----FCREAAFSDDGVRATIVTAQGERI-LRSQLLGRFNLSN 308 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ML + + L +D +K H GR +R L G L+ Y P +++ Sbjct: 309 MLAAVATLLALDYALDEILKVTPQLHGPVGRMQR----LGGGDKPLVVVDYAHTPDALE- 363 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 VL + PH G+ + + G + + ++AE L+ Sbjct: 364 --KVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLA 403 >gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] Length = 496 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 156/400 (39%), Gaps = 67/400 (16%) Query: 19 IGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + +VP V G I DSR F I G H D H FI + GA V+ Sbjct: 9 VALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGARAVLT 68 Query: 71 ---NTDMVASIGSLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ + L +P +D ++ A +R +I ITG+ GKTTT + Sbjct: 69 ERASVDVPDGVAVLYVPNLQEALDTIVPYFYDYPARA-MR----VIGITGTNGKTTTSYL 123 Query: 126 LTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVD-VDFGIFE--- 166 + L IG+ I +P + LA M +D + E Sbjct: 124 VRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVSS 183 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEK 219 L + + I F T A T + HL +E A AKA +FE G ++ Sbjct: 184 HALALGRVAGIEFDT-------AAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKE 236 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 T LN DD+ E ++A +H + ++G AD + + + + + GK Sbjct: 237 GKTAVLNADDAASETMRAHTHC----PVITYGVDHPADLTAQDVQLACDGMELTLMHGGK 292 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTA--IKALSVFHPKEGRGKRYRCALNQ 336 + +H GI G N+L +G + L V+ A AL+ F GR + R Q Sbjct: 293 RLFHLHTGITGLFNVHNVLAAVG--ASLAEHVEAADISAALTAFTGVPGRFELVR--EGQ 348 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F ++D Y P M+ + ++ +GR IAV G Sbjct: 349 DFAVIVD--YAHTPDGMENVLRTARAVT---KGRIIAVFG 383 >gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 2_1_31] gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 2_1_31] Length = 432 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 104/431 (24%), Positives = 176/431 (40%), Gaps = 58/431 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H D +F + K G+ D V + I V +D++ Sbjct: 32 DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPY--NDFVKEVQKRGIKV--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + V L++K IIAITG+ GK+TT T +S + Y +IG L+ Sbjct: 79 VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131 Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 A + D+DF EL L + RP+I++I + P H+ + +E K Sbjct: 132 EALLHEKDLDFVSLELSSFQLENVENF----RPYISMIINMGPDHIERYKSFDEYYDTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + + N DD E ++ + K I S KSK A+ + K + + Sbjct: 188 NIAKNQNENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANVYVEDNKIYVGKDF 243 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + ++ S++ G H +N L + IL D + + L V P E R + + Sbjct: 244 I-IEADKLSLK------GIHNLENTLFMVATAEILNIDREKLKEFLMVATPLEHRTELF- 295 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N G I++S N S K AI I + G + +L+ Sbjct: 296 --FNYGKVKFINDSKATNVDSTKFAI--------QANKDSILICGGYDKGVDLAP----- 340 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLV-DGDV 446 LAE++ NI V+L G ++ L + + +H ET++ L ++ D D Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIETELKKVGYEASKIHKLETIENSLLDMKKRFTKDSDE 399 Query: 447 VVVKSSNSCGF 457 V++ S + + Sbjct: 400 VILLSPATSSY 410 >gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] Length = 489 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 21/209 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ DSR + + F A+KG DG+ FI A+ GA +V ++ + G ++P + Sbjct: 22 VTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARAIVTDSREAWAAGG-AVPFY 80 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL +A V I A+TG+ GKTTT +L L S+ + IG+ Sbjct: 81 LVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTTTAFLLEQMLKSVNRKCLLIGTIE 140 Query: 145 NHIGVPLTLAR--MPVDVDF--------------GIFELGMSHLGEIRFLTHLVRPHIAV 188 HIG + ++ P D + E+ L + R V +A+ Sbjct: 141 THIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEMSSHALAQERVWG--VPVDVAM 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 T + HL +E AKA +FEG+ Sbjct: 199 FTNLTQDHLDYHGTMERYFQAKARLFEGV 227 >gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 432 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 82/336 (24%), Positives = 142/336 (42%), Gaps = 39/336 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 +G+ + D +++ +EA H DG +F + K G+ D V + Sbjct: 22 KEGYETIVVDDKKAMTSEEAL-----NHLDGLEFFI----KSPGIPY--NDFVKEVQKRG 70 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 I + +D++ A N + + L++K IIAITG+ GK+TT T +S + + Sbjct: 71 IKI--LDEIEIAYNYM-IEKDLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKAA 121 Query: 143 YNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 Y +IG L+ + D+DF EL L + +P+I++I + P H+ + Sbjct: 122 YAGNIGRSLSEVLLKEKDLDFISLELSSFQLENVENF----KPYISMIINMGPDHIERYK 177 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E K I + + N DD E ++ + K I S K K AD ++ Sbjct: 178 SFDEYYDTKFNIVKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVK 233 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K C ++ + + + S++ G H +N L + IL D + + L + Sbjct: 234 NDKICHGENTI-IDVDKLSLK------GIHNLENTLFMVATAEILKIDKEKLKEFLMIAT 286 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 P E R + + N G I++S N S K AI Sbjct: 287 PLEHRTELF---FNYGKLKFINDSKATNVDSTKFAI 319 >gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS185] gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS185] Length = 499 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 28/230 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80 N +++DSR+I + F A+ G DG FI A+ GA V+V+TD G Sbjct: 21 NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHSDNV 80 Query: 81 ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134 + I VF + + A+ +S T +I ITG+ GKT+T +++ ++S+ Sbjct: 81 EHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140 Query: 135 KTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLTH 180 + A +G+ N + L TL R D + + + +S G ++ Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 V +AV T + HL +E A+AK +F G LN DD+ Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249 >gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 487 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 34/359 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +QA++ S ++ Q + I+S + P + F +G +D H ++ A++ GA V+ Sbjct: 3 IQALK-RSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIA 61 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 N + L IPV + +L + AV K I +TG+ GKTT L Sbjct: 62 NRTL-----HLDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQM 116 Query: 130 LSSIKKTYACIGSYN-NHIGVPLTLARMPVD---------------VDFGIFELGMSHLG 173 L+ T A IG+ + V + L+ D V + EL L Sbjct: 117 LNQ-SSTSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHALA 175 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + R + + +IT I HL + AK +I + ++ G +N DD Sbjct: 176 QDR--AGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDRIKPGGYAVINMDDPHAP 233 Query: 234 LLKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + A+ H +KT+ Y +++ADF ++ + +GK V Sbjct: 234 AMFARCHGR-VKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +NML + +D L+ P +GR + LN G L+D ++N Sbjct: 293 FLFNVENMLAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQ--TLNNGATGLVDYAHN 349 >gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 57/332 (17%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LLQ I G VP V + DSR + + F A +G +DG+DF AV++G Sbjct: 1 MNLKELLQGISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGAL-----NKLAVA--ARLRSKATIIAITGSV 117 A +A + S P + ++ + +LA R K + +TG+ Sbjct: 61 A---------IAILSSFYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTN 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VP------------LTLARM 156 GKTT M+ L K IG+ + +G P + R Sbjct: 112 GKTTVTYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRK 171 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 V ++ L ++ + F + ++T + HL +E +AK ++F Sbjct: 172 AVAMEVSSIGLELNRTAQTSF-------DVGILTNVTLDHLDFHGTLENYLTAKEKLFSQ 224 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L K G +N D + ++ ++ ++G + A+ ++ C +++ L Sbjct: 225 LPKNGCAVINADSPY----ASRFCSIASSRCVTYGIEEAAE-----YRACD----LQLSL 271 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G +VH G Y ++ + + L A Sbjct: 272 LGTRYTLVHRGKSYLCKSPLIGRYNVYNTLAA 303 >gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 776 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 49/327 (14%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV+T + V + L IP L++ + A L ++ IA+ GS Sbjct: 67 RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 117 Query: 117 VGKTTTKEMLTIAL--SSIKKTYACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGM 169 GKTTT M+ + L +S+ T G N +G L + D +L Sbjct: 118 HGKTTTTSMIGVTLDRASVSPTVIVGGEVPDLGTNAKLGTSRYLVSEADESDGSFLKL-- 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 RPHIAV+T + H+ ++ +E+I A ++ GT L Y++ Sbjct: 176 -------------RPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYEN 222 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288 L A++ +T+ S+ AD++ + C V +G ++ + H Sbjct: 223 EILRRLGAETD----RTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRISLHIP 278 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + + + D D AL+ FH G +R++ + ++D+ Y Sbjct: 279 GRHNVLNALACVAVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD-YAH 334 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375 +P + A ++ Q P GR + V Sbjct: 335 HPTEIAATLAAARQTEP---GRLVCVF 358 >gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] Length = 490 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 152/368 (41%), Gaps = 30/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+ +DSR + P +AF A++G DG F+ A+ GA V+ + + ++P Sbjct: 22 LSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIAAGAVAVLAEAETFSVQQEQAVPRV 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 + ++ +LA S ++ +TG+ GKT+ L AL+++ A +G+ Sbjct: 82 NFPGLSRSVGELAARWYGEPGSAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVGTLG 141 Query: 144 -----NNHIG-----VPLT----LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N I P+T LAR + D E+ L + R V +AV Sbjct: 142 LGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAMEVSSHALDQHRLGPTPV--SVAV 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + ++ HL +E +AK+ +F + +N DD L A G++ + Sbjct: 200 FSNLSRDHLDYHGDMEAYLAAKSVLFT-RDGVKLAVINCDDPVAYSL-VGCLADGVRCV- 256 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +FG A + +E + E+ + G+S V G N++ GI+ Sbjct: 257 TFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPLFGRFNLSNLMAVAGILHGQGV 316 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D+ AL+ P GR + + A G T+I + Y P ++ A L H Sbjct: 317 STDSLAGALAAITPVPGRMEPVQQA---GCPTVIVD-YAHTPDGLEKA---LQACRAHFA 369 Query: 369 GRRIAVLG 376 GR ++G Sbjct: 370 GRLFCIIG 377 >gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134] gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134] Length = 475 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 148/369 (40%), Gaps = 43/369 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +AI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---M 281 DD + E+L S K + +G +++A + + Q V L G + + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRHLNGHAEPPL 272 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338 +VV + G H QN L + I + L +KAL FH R +RY A G Sbjct: 273 DVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATADGTGT 332 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+D+ Y +P M A +S P GRR+ + F D +VL Sbjct: 333 FTLVDD-YGHHPVEMAATLSAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G + D AL R++ V + E M+ + I ++ GDVV Sbjct: 388 VDALLLAEVYAAGEAPIVAADGRALTRALRVAAKVEPVFVEQMEEMPQAIMNAARPGDVV 447 Query: 448 VVKSSNSCG 456 V + S G Sbjct: 448 VTMGAGSIG 456 >gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 153/370 (41%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+KG DG F+ AV++GA +V D V I +PV Sbjct: 24 ITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTV--IADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD AL A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ D G+ M SH + R L V+ Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELADEGVTHAAMEASSHGLDQRRLDG-VKLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + IEE AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi 80a] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292 Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTNSTRFE 292 Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 168/408 (41%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292 Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y +N++ L +VS IL D+ + L +GR Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFTTN---RLISVFGSAGE 393 >gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] Length = 488 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 153/389 (39%), Gaps = 46/389 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L ++ S+ ++ I DSR + + F AIKG DGH++I A+++ Sbjct: 1 MANLKDILYKVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GA + +V D+ + I + D+ AL +A K +IA+TG+ GKTT Sbjct: 61 GA-VAIVCEDIPSDIHP-QVTYVQTDNSAKALGVMAANYFGHPSEKLKLIAVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFG--- 163 T +L ++ I + N I +P T L +M VD G Sbjct: 119 TVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKM---VDSGCNI 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 +F SH E + L + AV T I+ HL + AK ++F+ L Sbjct: 176 VFMEASSHAIEQERMAGL-KLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDLPSDAFA 234 Query: 224 FLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +N DD + KA + +K + + K K S S ++L Sbjct: 235 LVNVDDKRGMVMLQNCKASKYTYSLKMMAIY-----------KAKVLS-NSIQGLELNID 282 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +V IGY A N+L +L + + + LS K GR + + N G Sbjct: 283 QKDVWFRQIGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFE--QVPNNAGIT 340 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368 ++D Y P +++ + + E Sbjct: 341 AVVD--YAHTPDALENVLQTIDNFRTGNE 367 >gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi JD1] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292 Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] Length = 530 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 30/231 (12%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-- 82 GF + DSR+I + F AI G DG +I A+++GA LVV + + G ++ Sbjct: 28 GFCGDLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFA 87 Query: 83 --------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + ++ L L K A + T++ ITG+ GKTTT ++L LS+ + Sbjct: 88 SSDNTVAIVKFYQLNQHLFTLTKNYYQAP-QDNMTLVGITGTNGKTTTSQLLAQMLSAYQ 146 Query: 135 KTYACI-----GSYNNHIGVPLT---------LARMPVDVDFGIFELGMSH--LGEIRFL 178 KT A I GS +N + T L + D F + +S L + R Sbjct: 147 KTCAVIGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQ 206 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L IA+ T ++ HL + +K +IF + +N+DD Sbjct: 207 ADLFD--IAIFTNLSRDHLDYHGSMASYGESKKQIFSA-DSNQVAVVNFDD 254 >gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] Length = 779 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 138/331 (41%), Gaps = 57/331 (17%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV+T + V + L IP L++ + A L ++ IA+ GS Sbjct: 70 RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175 GKTTT M+ + L + GV T V V + +LG + LG Sbjct: 121 HGKTTTTSMIGVTL--------------DRAGVSPT-----VIVGGEVPDLGTNAKLGTS 161 Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 R+L +RPHIAV+T + H+ ++ +E+I A ++ GT L Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVL 221 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284 Y++ L A++ +T+ S+ AD++ + C V +G ++ + Sbjct: 222 CYENEILRRLGAETD----RTVVSYAIDAAADYRAADIETCGSVISFTVFERGTALGRIS 277 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H G H N L + + + D D AL+ FH G +R++ + ++D+ Sbjct: 278 LHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFH---GAKRRFQTKGKERGIWVVDD 334 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375 Y +P + A ++ Q P GR + V Sbjct: 335 -YAHHPTEIAATLAAARQTEP---GRLVCVF 361 >gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Helicobacter pylori Lithuania75] Length = 493 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168 +IAITGS GKT+TK L L + +A S N +G+ + + D + I E G Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 + G+I+ +T L+ PH+ V+ + HL F +E I KAE+ + LEK Sbjct: 230 ARNKGDIKEITRLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282 >gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 41/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI DSR +AP + F +KG DGH F + A++KGA + +++ V+ L V Sbjct: 119 ITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKGA-VAIISLMEVSLTEGLKAAVI 177 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L+ LA + K +++ ITG+ GKTTT +L ++ +G+ Sbjct: 178 -VEDTSVILSALAGVIYGHPSKKLSVVGITGTNGKTTTSYLLQSLYEAMGLQVGLLGTIQ 236 Query: 145 NHIG----------VP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 +IG P L + + + I E+ SH G + + +A Sbjct: 237 YYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVCIMEVS-SH-GLVLGRCEDIEFDVA 294 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + H+ EE AK +F + E+ + +N DD ++ + Sbjct: 295 VFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQRKV-VNIDDPNVSYFVSQGNQDVP 353 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G K+AD K +S + V+ +E+ +G H N+L + + Sbjct: 354 VVTFGMG-DKSADVYPLAVKLSLVESEVLVRTPQGDVEISSRLLGRHNVYNILTAVAVGI 412 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLS 361 + A ++ ++ + G RC L Q F L+D ++ + A +L Sbjct: 413 AVGAPLEDIVRGIEAVDAVPG-----RCELIDEGQTFAVLVDYAHTPD-----AVARLLD 462 Query: 362 QISPHGEGRRIAVLG 376 + G R I VLG Sbjct: 463 TVRECGPKRIITVLG 477 >gi|78777404|ref|YP_393719.1| cytoplasmic peptidoglycan synthetases-like [Sulfurimonas denitrificans DSM 1251] gi|78497944|gb|ABB44484.1| Cytoplasmic peptidoglycan synthetases-like protein [Sulfurimonas denitrificans DSM 1251] Length = 481 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/311 (24%), Positives = 127/311 (40%), Gaps = 35/311 (11%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 +VA GS F V+ L K +L+S K I+AITGS GKT+ K L LS Sbjct: 129 LVAYAGS-----FAVEKFLFESFKKEAKKKLQSMEKLQIVAITGSYGKTSIKNFLYEILS 183 Query: 132 SIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + YA S N G+ + +P + + I E G G+I +T + P V+ Sbjct: 184 KKYRVYATPRSVNTLGGIIKDINESLPNESEIYICEAGARESGDIYEITTFLEPQNVVVG 243 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + AH+ F ++ I S K EI + + I + D E K + Sbjct: 244 KVGLAHIEYFKTLQNIISTKLEIMKSPRLQRAFIHTSVTDEPHE-----------KVTFF 292 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + +N D +L + + E+ L + + + + +G N+ + + I Sbjct: 293 GNEIQNIDAKL-------DGTDFEIHLDNEILSLHTNVLGSFQTMNIAVAIRIAKTFGMS 345 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 D I+A+ P E R + + G ++D+ YN N M A+ + S EG Sbjct: 346 NDEIIEAVRGLKPVEHRLQMIKA----GGKLILDDGYNGNIDGMLEAVRLCSL----HEG 397 Query: 370 RRIAVLGDMCE 380 R++ V + E Sbjct: 398 RKVIVTPGLVE 408 >gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae 642] Length = 487 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 82/372 (22%), Positives = 152/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ A+A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAAQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F + + +N DD F L A + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAAIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +KAL GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKALPKLEGPVGRMQR----LGGAEKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] Length = 486 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/315 (25%), Positives = 124/315 (39%), Gaps = 28/315 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI+IDSR I F AIKG DGH +I A++ GA ++V D+ + S +I V Sbjct: 25 GINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELGACAILVE-DIPEKL-SENITYIQV 82 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 A+ K+A K ++ +TG+ GKTT +L + + N+ Sbjct: 83 KSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKTTVATLLYNMFRKFGHKVGLLSTVCNY 142 Query: 147 I---GVPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVITT 191 I VP + P ++ I M G E F+ +H + + T Sbjct: 143 IDDKAVPASHT-TPDPIELNILLAKMVEEGCEYAFMECSSHAIHQRRIGGLKFAGGLFTN 201 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL E +AK F+ L K N DD ++ A T+ ++ Sbjct: 202 LTRDHLDYHKTFENYRNAKKMFFDDLGKDAFAITNADDKNGMIMVQNCKA----TVKTYS 257 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + ADF+ + E ++EV GK + V IG N+L G +L + Sbjct: 258 TKRAADFKAHLLECHFEGMYLEV--NGKEVGV--QFIGKFNVSNLLAVYGAAVMLGKKPE 313 Query: 312 TAIKALSVFHPKEGR 326 + ALS GR Sbjct: 314 DILVALSALKNVNGR 328 >gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] Length = 508 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 169/408 (41%), Gaps = 63/408 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKG-SLDLE----ISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT-- 122 VV + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 VVCSRDVDFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 123 -------KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 K+ + + S IK Y + I L+ + + + I Sbjct: 128 YIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGT 222 E SH ++ + + AV+ T I HL I+ + K +F + + G Sbjct: 187 LE-STSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF 245 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + K +A+ YS KS ADF + S+++ + E Sbjct: 246 GVINLDDLYSSDFK---NAVKKSFTYSL-KSSKADFFV---------SFIDEKTDSTRFE 292 Query: 283 VVHHGIGY---------HMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRC 332 H G+ Y +N++ L +VS IL D+ + L+ +GR Sbjct: 293 FYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SI 350 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 351 NLGQNFSVIID--YAHTPGAFSKLFPIFKRFATN---RLISVFGSAGE 393 >gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 494 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ + Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTP 253 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++S+G + A F + ++ LQG S + V Y + + Sbjct: 254 C----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYSVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] Length = 488 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 150/379 (39%), Gaps = 62/379 (16%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 IDSR + P + F A+ G G DF A+++GA VV + + S V DD Sbjct: 26 IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAVVAAPGTLPATLSQQNCVVH-DDP 84 Query: 92 LGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--- 146 AL LA A R +I +TG+ GKTT +L AL + + IG+ N Sbjct: 85 REALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIANRWPG 144 Query: 147 ------IGVP------LTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + P L+RM D VD E+ L + R T +R AV+T ++ Sbjct: 145 HEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRR--TAGLRFSAAVLTNVS 202 Query: 194 PAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSF 250 HL +E +AK+ +F L + G +N DD + L+ A G YS Sbjct: 203 QDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWG----YSL 258 Query: 251 GKSKNADFQL---------RKWKQCS----EQSW-MEVQLQGKSMEVVHHGIGYHMAQNM 296 K D L RK + S Q W + L G+ H+G AQ Sbjct: 259 HSEKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGR-----HNGANLMAAQAT 313 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ LG D A+ LS P GR +R A F Y P +++ Sbjct: 314 LLALGF-----GPADAAV--LSDAPPVPGRLERVENAAGLDIFV----DYAHTPDALENV 362 Query: 357 ISVLSQISPHGEGRRIAVL 375 + ++ + +G R+ V+ Sbjct: 363 LQAMTAL----DGNRLLVV 377 >gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium fredii NGR234] gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium fredii NGR234] Length = 486 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 38/389 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F +L +QG++ I + GI+ DSR + P + F A+ G +G +I A+ +GA Sbjct: 11 FPELSAQLQGNAAEI----DIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAA 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT--- 121 V+V A G+ PVF + + L + AARL R T++A+TG+ GKT+ Sbjct: 67 AVIVAEGSGADAGA---PVFELSEPRRFLAQ--AAARLFGRQPETMVAVTGTAGKTSVAS 121 Query: 122 -TKEMLT---IALSSIKKTYACIGSYNNHIGV----PLTLARMPVDV-DFGIFELGM--- 169 T+++ +A + I T N++ + P++L ++ ++ D G+ M Sbjct: 122 FTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELADEGVTHAAMEAS 181 Query: 170 SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH L + R VR A T + H+ +E ++K +F L G+ + + Sbjct: 182 SHGLDQSRL--DGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFA 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + + G +N DF L++ + + EV + E+ Sbjct: 240 DDQWSAEAIAAARKAGHDVRTVG--RNGDFISLKRVEHFRHKQSAEVHVGDDIFEIHVPL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L+ G+ + A AL GR G +D Y Sbjct: 298 AGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGR-LELVGQTKDGALAYVD--YA 354 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ +VL + P GR I V G Sbjct: 355 HKPDALE---NVLESVRPFTTGRVIIVFG 380 >gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM 273] gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium luteolum DSM 273] Length = 523 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 33/237 (13%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V ++ DSR + P F A++G DG FI A+ +GA VV+ D + P Sbjct: 36 MVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKDAIARGAS-AVVSEDFPMELALNGPPC 94 Query: 86 FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V D AL+ A A RLR I+ +TG+ GKTTT +++ LS + Sbjct: 95 IRVPDARRALSLAAAAYYGHPADRLR----IVGVTGTNGKTTTARLISSILSMNGISCGY 150 Query: 140 IGSYNNHIG---VPL-----------TLARMPVDVDFGIFELGMS----HLGEIRFLTHL 181 IG+ IG +PL L RM VD + +S LG + H Sbjct: 151 IGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGCRAVSMEVSSHALELGRV----HG 206 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + AV T + P HL +E A AK ++F+ L G N +D + A+ Sbjct: 207 IAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPGGIGIFNTEDPMATFMAAR 263 >gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 463 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 146/368 (39%), Gaps = 42/368 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F I+G DGH + AVQ GA V+ ++ SL++PV V D Sbjct: 6 DSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAEREL-----SLNVPVIIVKDTA 60 Query: 93 GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------- 143 A+ LA A + + +I ITG+ GKTTT ++ L+ K+ IG+ Sbjct: 61 RAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTMYTKVAGE 120 Query: 144 ----NNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 N LTL + + V+ + E+ L E R H ++AV T + Sbjct: 121 TLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGR--VHGCDFNVAVFTNLTQ 178 Query: 195 AHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 HL ++E AK +F L K LN DD + + A I Sbjct: 179 DHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAA----QIL 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ AD + + + + ++ V IG N+L +G Sbjct: 235 TYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAALASGL 294 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 +++ ++++S GR + Q F ++D Y P S++ A+ + + + E Sbjct: 295 ELEAILESISTVKGVPGRFETVDAG--QDFSVIVD--YAHTPDSLENALETVKEFA---E 347 Query: 369 GRRIAVLG 376 GR V+G Sbjct: 348 GRIFVVVG 355 >gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum H-6-12] gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 464 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 25/282 (8%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S +IP+ D+L L K K +II + G+ GKTTT M+ + L + K Sbjct: 85 SKNIPILHRSDLLAELTK--------EKKSII-VGGAHGKTTTTSMIALVLENNKTDPTI 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 I V L + + G E ++ E + P+I V+T I HL Sbjct: 136 I--------VGGELEDIGGNAKLGSGEYLVAEGDESDGSILKLNPYILVVTNIDNDHLDY 187 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + IE I S ++ E + + G + LN D + K + K Y++G S NADF Sbjct: 188 YENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDIIGK---IKDKKYYTYGFS-NADFT 243 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 S S +V + + V + G H N L +GI IL D + IKAL Sbjct: 244 ADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAIGISYILGLDFEQTIKALE 303 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 FH + R + N L+ + Y +P + A + L Sbjct: 304 KFHGVQRRIQFKGVIEND---VLVFDDYGHHPTEILATLETL 342 >gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 525 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/328 (22%), Positives = 127/328 (38%), Gaps = 30/328 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P +N IS DSR+ PQ F + G ++DGH F+ A+ KGA ++ + S Sbjct: 39 PSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFSRK 98 Query: 83 IP---VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 P +D L +L++ R+ K + ITG+ GKTT + ++++ Sbjct: 99 FPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGIPS 158 Query: 138 ACIGSYN--NHIG-------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH--- 185 IG+ + +G P T + F F L + + + Sbjct: 159 GSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQRTA 218 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAK 238 +A+ T ++P HL E AK ++F ++ +N DD +++K Sbjct: 219 GINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFRQAKRA---VVNLDDEGMGADIIKDF 275 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 +L YS K AD + + ++ + E++L S V G + N+L Sbjct: 276 QGSL---LTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLS 332 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR 326 + L + I+AL GR Sbjct: 333 AICTAMHLGFTIGQIIEALPRVENPSGR 360 >gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Nitratiruptor sp. SB155-2] gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Nitratiruptor sp. SB155-2] Length = 474 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 36/312 (11%) Query: 88 VDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 ++ L A+ K +L + TIIA+T S GKT+ K + L Y S N Sbjct: 133 IESYLMAIYKKEARKKLETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTL 192 Query: 147 IGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 G+ + +P + + E G G+I +T + H AV+ + P H+ F +E Sbjct: 193 AGIIKDINTALPQVCEVYVVEAGARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLEN 252 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRK 262 I + K EI ++ FL ++ L K +K FG K+ AD Sbjct: 253 IIATKLEILHS-KRLKKAFL------WDGLPVKDDPKFVK----FGSNIKNVKADLDGVS 301 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 W +++LQG+ +G A N+ + + L D+ T K +S Sbjct: 302 W---------DLELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKG 352 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R +R + G +ID+S+N N M A+ ++ GR++ V + E Sbjct: 353 VEHRLQR----IEAGGKVIIDDSFNGNLEGMIASYELVKNYP----GRKVVVTPGIVESD 404 Query: 383 ELSQSFHIDLAE 394 E S +I+LA+ Sbjct: 405 EKS---NIELAK 413 >gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK321] gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK321] Length = 450 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + T Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAT 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 493 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G + D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R +VD+ + E+ H+ ++ Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYCVMEVTSQGLHMERVKGCNF--- 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKA 237 IAV T + HL +E K +F L LN DD E K Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYFKK 253 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 254 ITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 310 AAITVALVEGIPLTNISDSLSTLKRIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 363 NVLSTISEFSKGKVITVFG 381 >gi|315928276|gb|EFV07592.1| mur ligase middle domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 431 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 5/128 (3%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 98 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 157 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 A + D I E G G+I +TH ++P I+++ I AHL F +E I S K E Sbjct: 158 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEA 217 Query: 214 F--EGLEK 219 E LEK Sbjct: 218 LNSERLEK 225 >gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus COL] Length = 492 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F + +G LVVVN + + A++ + +P Sbjct: 22 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 81 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 82 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 136 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 137 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRS----VEF 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 193 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 248 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 249 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 299 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 300 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 334 >gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] Length = 505 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/359 (22%), Positives = 135/359 (37%), Gaps = 34/359 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 FV I DSR P + F + G ++ A+QKGA ++ + L +P Sbjct: 33 FVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTG----LQVPQ 88 Query: 86 FGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V DV + AL +A R +TG+ GKTT ++ + S + G+ Sbjct: 89 CIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTGLSGTV 148 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRP----------------H 185 H + A + + +L L E+ R TH V Sbjct: 149 EYHDSISSRPASLTTPDANELSQL----LAEMVCRKATHAVMEVSSHALDQNRLAGIDLS 204 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + VIT + H A+ KA + + ++ GT+ LN+DD A+ + + Sbjct: 205 VGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNWDDPTCRSFAAEVKSS--Q 262 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T+ ++ AD + ++ + + E+ G S+ V IG H N L Sbjct: 263 TLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAACLS 322 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS--MKAAISVLSQ 362 L + + GR +R C Q F LID ++ + S +++A + SQ Sbjct: 323 LGVSLSEIALGIERLVTVPGRMERVTCG--QSFTVLIDYAHTDDALSHVIRSAKRLCSQ 379 >gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 99/413 (23%), Positives = 173/413 (41%), Gaps = 50/413 (12%) Query: 53 GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 GHD A +GA LVVV N + V +I + IPV D+L L +A R Sbjct: 56 GHD---AANIRGADLVVVSSAIPPTNPEYVEAIKN-DIPVIHRADMLSTL----MATR-- 105 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGI 164 IA++G+ GKTTT M+++ L + IG N IG TL + G Sbjct: 106 ---KGIAVSGAHGKTTTTSMISLVLEKGGMSPTVVIGGELNDIGGNATLGK-------GE 155 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + + + FL + P+IAV+T I H+ ++ +E + A + L+K G Sbjct: 156 YMVAEADESDGSFLK--LTPYIAVVTNIENDHMDHYKDMESMKEAYRKFIMNLKKDGFAL 213 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 L D+ + + +++G + AD+ + S EV + + + E+ Sbjct: 214 LGTDNEHVRDVMKRVDV----PYFTYGINYPADYMPKNIHIEGVDSRFEVYYRNERLGEL 269 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 H G H N + + L ++ AL F G +R++ G ++D Sbjct: 270 ELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAFR---GVQRRFQLIGEVGGVRVVD 326 Query: 344 ESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMCEMGELSQSFHIDLAEVL-- 396 + Y +P +KA + ++P+ + R + E E +F D EV+ Sbjct: 327 D-YAHHPTEIKATLKAAKLLNPNKLYAVFQPHRYTRTKMLAE--EFGNAFE-DADEVIIT 382 Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 LY+ + G + + +AL RS +V Y + + + ++ +V GD V+ Sbjct: 383 RLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGDFVL 435 >gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] Length = 481 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 144/373 (38%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + G+ IDSR + + F AIKG DGH FI AV +GA V+ T M + G + Sbjct: 23 ITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQGATAVLCET-MPTQLPQGVTFVQ 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D +G + + K ++ +TG+ GKTT +L + + Sbjct: 82 VESTEDAVGPVATM-FYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVC 140 Query: 145 NHI---GVPLT------------LARM-PVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 N+I +P L RM ++ E + +G + F Sbjct: 141 NYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIGGLTFAG---- 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V + + HL E +AK F+ L K N DD ++ + A Sbjct: 197 ---GVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNADDKNGMVMVQNTRA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++ ADF+ + + E ++E+ EV IG N+L Sbjct: 252 --AVKTYSTRSMADFKAKILECHFEGMYLEIN----GAEVGVQFIGKFNVSNLLAVYATA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + +S H GR + +G+ ++D Y P +++ ++ + ++ Sbjct: 306 VMLGKRPEDILLVMSTLHSVNGRLQPLSSP--EGYTAIVD--YAHTPDALENVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 +G+G+ I V G Sbjct: 362 L-NGKGKVITVCG 373 >gi|86150175|ref|ZP_01068402.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597486|ref|ZP_01100720.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562423|ref|YP_002344202.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839291|gb|EAQ56553.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190078|gb|EAQ94053.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360129|emb|CAL34923.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926041|gb|ADC28393.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315930806|gb|EFV09802.1| mur ligase middle domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 475 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 5/128 (3%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 A + D I E G G+I +TH ++P I+++ I AHL F +E I S K E Sbjct: 202 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEA 261 Query: 214 F--EGLEK 219 E LEK Sbjct: 262 LNSERLEK 269 >gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] Length = 505 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 157/370 (42%), Gaps = 36/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR + P F A++G G A ++GA V + D + +LSIPV Sbjct: 33 VTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGA--VAILWDEAEAAPALSIPVL 90 Query: 87 GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + + AL + A+ + ++A+TG+ GKT+ ++ AL + +G+ Sbjct: 91 HLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALEQLGVPTGVVGTLG 150 Query: 145 NH---------------IGVPLTLARMPVDVDFGIFELGMSH-LGEIRFLTHLVRPHIAV 188 I + LA + D + SH L + R VR +AV Sbjct: 151 TGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQGRMAGLPVR--VAV 208 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +T + HL + A AKA +F GLE T LN DD+ + L ++ A I T Sbjct: 209 LTRLGSDHLDFHGSQQAYADAKARLFAWPGLE---TAVLNADDALGQRLIRETTAEHILT 265 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G S AD R+ + S+ +++ G++ V G N+L TL + L Sbjct: 266 YSAVGAS--ADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNLLATLAALRAL 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A+ A+S GR +R+ L G ++D ++ + +A + L + PH Sbjct: 324 GHSWPAAVDAVSRLRGVPGRMERFE--LPSGALLVVDYAH-----TEQALAAALDALRPH 376 Query: 367 GEGRRIAVLG 376 GR IAV G Sbjct: 377 TAGRLIAVFG 386 >gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] Length = 509 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 35/372 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSL 81 PQ +++DSR P F A+ G H DG DF+ A++ G V+ + + S+ Sbjct: 30 PQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLCEAEALPTSVPEQ 89 Query: 82 SIPVFGVDDVLGALNKL-----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V + G L +L AV A L +I +TG+ GK++ L ++ Sbjct: 90 EARVLAVPGLRGQLGELGRHVFAVPASLE----LIGVTGTNGKSSVTHYLAALSEALGTP 145 Query: 137 YACIGSYNNHIGVP--LTLARM----PVDVDFGIFELGMSHLGEI--RFLTHLV------ 182 A IG+ +G P L AR+ P+ + + EL +G + +H + Sbjct: 146 AAVIGTLG--VGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVT 203 Query: 183 --RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 R H AV T ++ HL + A+AKA +F+ E +N DD L+ A Sbjct: 204 GCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHRE-LALAVVNGDDRLSPLMLA-GL 261 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ + + G + ++ W ++ + +E+ +G N+L+ + Sbjct: 262 AKGVR-VLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAI 320 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A+++ A + P GR +R ++D Y P +++ A+ L Sbjct: 321 ATLYGMGAELNALFSAAARLAPVPGRMQRL--VAENAPTVVVD--YAHTPDALRNALEAL 376 Query: 361 SQISPHGEGRRI 372 P +G ++ Sbjct: 377 RAHLPSSDGAKL 388 >gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] Length = 481 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 24/305 (7%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARM 156 A+AA +R + ++ A+ G+ GKT+T ML ALS + Y G G L Sbjct: 113 ALAALMRGRFSV-AVAGTHGKTSTAAMLVSALSGAGMSPDYVIGGRVGGRSGTGLG---- 167 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + E S + + +P + VIT I HL + ++ +A A A E Sbjct: 168 --ETSTIVVEADESDGSLVAY-----QPDVVVITNIDADHLDQYEDVDTLARAFAGFAER 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 TG + + DD + A GI+ +++FG+ AD +R + + Sbjct: 221 AGTTGFVVMPEDDPHSRWVTRYLRAKGIR-VFTFGEGSPADLSIRLESELPGSVRFTARF 279 Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + V + G HMA+N L L A A+ L+ + G G+R+ Sbjct: 280 RDDDEAAVEVPVPGSHMARNAGAALLTAVKLGASRSGAVLGLAQY---PGVGRRFELKGE 336 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + D+ Y + S++A+++ L + + G R+ + + C L+Q F ++A+ Sbjct: 337 PRGIRVYDD-YACHHTSIRASLTALRRTAMGG---RLIAVAEPCRQYRLAQ-FQAEIADA 391 Query: 396 LSLYN 400 L++ + Sbjct: 392 LAVAD 396 >gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus KT] gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus KT] Length = 475 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 48/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + + T+ IG L + + G + + Sbjct: 108 IAIAGTHGKTTTTSLIASILAEAGMDPTFV--------IGGRLEASGSNARLGTGEYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P I+V+T I H+ + E + A E + L G + Sbjct: 160 EADESDASFL-HLT-PIISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQG--KSME 282 DD + + K + +G S+ A ++R +E M ++ G + + Sbjct: 218 DDPNVRAILPQIS----KQVMPYGFSEEA--RIRASNVQAENGRMHFTVTRINGVTTTFD 271 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQG 337 V + G H N L + + S L IKAL+ F +G G+R+ A + G Sbjct: 272 VTLNLPGRHYVLNALAAIAVASELNVPDGAIIKALAEF---KGVGRRFERYGEVPARDGG 328 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +FTL+D+ Y +PA M A I+ P GRR+ + F D +VLS Sbjct: 329 YFTLVDD-YGHHPAEMNAVIAAARDAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLS 383 Query: 398 LYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 ++ + V+ +G + D +L R+I V + ET L I DGDV Sbjct: 384 SADVVLLTEVYAAGEAPIVAADGRSLVRAIRVAGKVEPLFVETPQELPQSILDMAQDGDV 443 Query: 447 VVVKSSNSCG 456 V+V + S G Sbjct: 444 VIVMGAGSIG 453 >gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002] gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002] Length = 463 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 46/369 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + +A + + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLTASVLAAAGLDPTFV--------IGGKLTAAGTNAKLGSGEFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P +AV+T I H+ + +++ A + L G L Sbjct: 160 EADESDASFL-HLA-PVMAVVTNIDADHMDTYEHSFDKLKQAFVDFLHRLPFYGRAVLCL 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEV 283 DD+ E+L + K + ++G S +AD Q + Q +V + + V Sbjct: 218 DDANVREILPRVT-----KPVTTYGFSDDADVQAANVRAVGGQMHFDVVARNGNQLHFPV 272 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGF 338 V + G H N L + I ADV + + L+ F G G+R++ + G Sbjct: 273 VLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEF---AGVGRRFQRYGEVACPSGGH 329 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+D+ Y +P M A ++ + P +R+ VL ++ D +VLS Sbjct: 330 FTLVDD-YGHHPVEMAATLAAVRGAFP---AQRL-VLAFQPHRYTRTRDLFEDFVKVLST 384 Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 ++ S V+ +G + D AL R++ V + E + L I ++ DGDVV Sbjct: 385 VDVLLLSEVYAAGETPIVAADGRALARAVRVTGKVEPLFIEAIADLPQVILDTVQDGDVV 444 Query: 448 VVKSSNSCG 456 + + S G Sbjct: 445 ITMGAGSIG 453 >gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus N315] gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH9] gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus 04-02981] gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 494 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F + +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] Length = 488 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 46/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 +N I DSR + + F AI+G DGHD+I +A +GA +V D V + + Sbjct: 24 INNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGALAIVCEKIPDEVIN----GVT 79 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML----TIA------LSS 132 V+D AL ++ K ++ +TG+ GKTT +L T A LS+ Sbjct: 80 YIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIATLLYDLFTKAGFKCGLLST 139 Query: 133 IK-----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +K + I + + I + L M V V+F E+ + + R T ++ Sbjct: 140 VKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVSSHGIDQHR--TTALKFEG 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHAL 242 + T ++ HL E K F+ L + N DD E++ KAK H Sbjct: 198 GIFTNLSHDHLDYHKDFAEYRDVKKRFFDELPASAFALTNVDDKNGEIMLQNTKAKKHTY 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +K+ AD++ Q E ++ + L+ E+ IG A N+L + Sbjct: 258 ALKSF--------ADYK----AQILENNFTGLLLKVDDQELWTKLIGNFNAYNVLAIYAM 305 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L ++ +S + GR +Y + + ++D Y P ++K + ++ Sbjct: 306 ADLLGLKTLEILRIISELNSVSGRF-QYVISEKEKITAIVD--YAHTPDALKNVLETINS 362 Query: 363 ISPHGEGRRIAVLG 376 I E I V+G Sbjct: 363 IRTRNE-ELITVVG 375 >gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila abortus S26/3] gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila abortus S26/3] Length = 483 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 98/431 (22%), Positives = 170/431 (39%), Gaps = 72/431 (16%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + G + V ++ DSR++ + F A +G H DG+DF AV+ G Sbjct: 1 MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFSHLAVENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLA--VAARL----RSKATIIAITGSV 117 A +A S+ P V ++ + L +L +AA+ K ++ ITG+ Sbjct: 61 A---------IAVASSIYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVVGITGTN 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLT------LARM------ 156 GKTT ++ + + K IG+ + +G P + LA+M Sbjct: 112 GKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKMVKSHLS 171 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 ++ L ++ L + F + V+T + HL S EE AK ++F Sbjct: 172 AAVMEVSSIGLAVNRLANVDF-------DVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSM 224 Query: 217 LEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 L +G +N D F E +A+ GI+ ++AD+Q + + Sbjct: 225 LPSSGLAVVNNDLCDAAQFIEATQAQPITYGIE--------QHADYQASHVRFSPFGTDF 276 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRY- 330 ++ +G++ IG H N+L + + L D+ I ++ GR + Sbjct: 277 DLLYKGETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIF 336 Query: 331 --RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 C + ID Y P ++ L + P +GR I V G C G+ QS Sbjct: 337 SGPCPI------YID--YAHTPDALDNVCQTLQALLPQ-DGRLIVVFG--CG-GDRDQSK 384 Query: 389 HIDLAEVLSLY 399 +A+V+ Y Sbjct: 385 RKIMAQVVEKY 395 >gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] Length = 532 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 153/370 (41%), Gaps = 27/370 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S DS+ I P + + A G G +F AV GA VV + A + L++PV Sbjct: 41 VTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAVPVL 100 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 +DV G +L+ V ++ + +TG+ GKTTT ++ L IG+ Sbjct: 101 VAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTGVIGTVQ 160 Query: 145 NHIG---VP--LTLARMP-----------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG VP T P DVD E+ L R T +R A Sbjct: 161 ILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGR--TAGIRFKAAA 218 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + HL + E+ AKA++F T ++ DD + + A G++ ++ Sbjct: 219 FLNLTQDHLDFHADFEDYFEAKAKLFT-PGYTERAVVDVDDEHGRRVVERCRANGVQ-VH 276 Query: 249 SFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306 +F K AD+ ++ S V G+ G N L + ++++ Sbjct: 277 TFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIVLLAVT 336 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D++TAI ++ H GR +R + Q F ++D Y P ++ A+S L ++ Sbjct: 337 GIDLETAIAGVADVHGVPGRMERIQVP-GQQFLAVVD--YAHTPDAVLTALSALRPVAER 393 Query: 367 GEGRRIAVLG 376 G GR V+G Sbjct: 394 GRGRLRVVVG 403 >gi|226323561|ref|ZP_03799079.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758] gi|225208245|gb|EEG90599.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758] Length = 173 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 ++ G +ID+ YNANP SMK+++ VLS + GR +AV+GDM E+G+ H + Sbjct: 39 IDTGSLLIIDDCYNANPVSMKSSLDVLSTAT----GRTVAVMGDMYELGDKENELHYNTG 94 Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + I + G H A +S V Y +T I++ + D ++VK Sbjct: 95 AHAAEIGIDVICCIGELSHHAYEGAKACAKSSAVLYFKTKQDFLGKIRNVVKKDDTILVK 154 Query: 451 SSNSCGFYRLINLL 464 +S+ F +I++L Sbjct: 155 ASHGMEFPEIIDVL 168 >gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] Length = 489 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 92/409 (22%), Positives = 158/409 (38%), Gaps = 60/409 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85 + GI S+ +AP F A KG +DG +I AV+ GA V+ + D + + P Sbjct: 23 ITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETGAAAVLNDIFDPSLKVSQIIHPN 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V V G L A R + ++ +TG+ GKTT ++ S++ IG+ Sbjct: 83 VAV--VEGKLVS-AFYHRPGEELLMVGVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEY 139 Query: 146 HIG---VPLTLARMPVDVDFGIFE------------------LGMSHLGEIRFLTHLVRP 184 IG P T V + + L + EI F Sbjct: 140 LIGDHAAPATHTTPDVATNHKLLREMVNQRSQAAVMEVTSHALHQGRVSEISF------- 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY--------DDSFFELLK 236 + + T ++ HL ++ K ++F L+ NY DD +FE + Sbjct: 193 DVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSLDPEAKKRKNYPKAAVVNIDDPWFEKII 252 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I ++G + +AD + + + +E + QGK V IG N Sbjct: 253 DGCRV----PIITYGIANHADLRAEEIQLGAEGIVYTLVHQGKRYPVSLPLIGRFNVLNS 308 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L T+G L ++ + A+ F P GR + +G +D + P ++K Sbjct: 309 LATIGCGISLGVPLNKVLDAVKSFPPVPGRLE--YVPNKRGLKLFVD--FAHTPDALKNV 364 Query: 357 ISVLSQISPHGEGRRIAVLG--------DMCEMGELSQSFHIDLAEVLS 397 ++ L +++ +G+ I V G +MG +++ F DLA + S Sbjct: 365 LNCLKELT---QGKLIVVFGCGGDRDPYKRSQMGRIAEEFS-DLAIITS 409 >gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] Length = 555 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 20/226 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF A GA V+ + + +P Sbjct: 84 VTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVAVLTDPSGAERAAAAGLPAL 143 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD + +LA R + I ITG+ GKTTT ++ L +++ T IG+ Sbjct: 144 VVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTAYLVEGGLRTVRST-GLIGTVE 202 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 +G + P D M G + + V H +AV Sbjct: 203 MRVGDERIKSERTTPEATDLQALFAVMRERG-VDSVVMEVSSHALVLGRVDGCVFDVAVF 261 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 ++P H+ SG+E+ AKA++F E++ +N DD + L Sbjct: 262 NNLSPEHMEFHSGMEDYFQAKAQLFT-PERSRLGVVNLDDEYGRRL 306 >gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] Length = 486 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEETPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSRKLMLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 487 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 97/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ VA R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 PH +GR + + G C G+ + +AEV+ VW++ D PR Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405 Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447 SE +F I+ V D V Sbjct: 406 --SEAPTNIFDDIRPGFVTADKV 426 >gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 499 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 202 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 260 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 261 ITSA----EVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 316 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D ++ ++ A Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVDYAH-----TLDALE 369 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 370 NVLSTISEFSKGKVITVFG 388 >gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 150/369 (40%), Gaps = 27/369 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVAS--IGSLS 82 V G+++DSR + F + G G +FI +A++ GAG ++ + + +A + Sbjct: 22 VTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGAE 81 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + +D A + A AT++ +TG+ GKT+ + A IG+ Sbjct: 82 VTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANIGT 141 Query: 143 YN----------NHIGVPLTL-ARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 + PLTL A + GI M SH + R L VR A Sbjct: 142 TGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDG-VRLVAAG 200 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL E +AKA +F L G +N DD + A +H G + + Sbjct: 201 FTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAE-L 259 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G K+A +L + ++ M +G + + + +G A N+L+ +G+V Sbjct: 260 LTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATG 319 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A V + L GR ++ N G +D Y P ++K A+ L PH Sbjct: 320 AQVGDLVPLLPRLATVRGRMQKVARREN-GATVFVD--YAHTPDALKTALRAL---RPHV 373 Query: 368 EGRRIAVLG 376 GR + V G Sbjct: 374 LGRLVVVFG 382 >gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] Length = 509 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 32/230 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82 + GI DSR I F A+ G DGHDFI A+ GA +++ ++T S ++ Sbjct: 21 IKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDTGQYQSASDVT 80 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 I V G+ LG + + K II ITG+ GKTT+ + L +I + A IG Sbjct: 81 FIQVEGIRKKLGIIAS-NYYGYPQDKIKIIGITGTNGKTTS----SFFLENILEKTARIG 135 Query: 142 SYNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPH 185 + N I P +L + + D+ I E+ SH EI + +++ Sbjct: 136 TTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVS-SHALEIGRV-DMLKFD 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK----TGTIFLNYDDSF 231 A+ T + HL +E +AK +IF L TG+ +N DD + Sbjct: 194 SAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEY 243 >gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 498 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 25/232 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T G Sbjct: 17 IPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDKHGIF 76 Query: 82 S-------IPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 I F + + + L N+ R K II ITG+ GKTT +++ + + Sbjct: 77 KYIKNVILIYFFKLSENVSLLANRFYKEPGKRLK--IIGITGTNGKTTVTQLINQWSTIL 134 Query: 134 KKTYACIGSY-----------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ NN P+ + V EL + + H V Sbjct: 135 GTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRV 194 Query: 183 RP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +IA+ T + HL +E+ SAK +F K I LN DD + Sbjct: 195 KEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLF-STHKVKKIILNADDQY 245 >gi|294620347|ref|ZP_06699659.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679] gi|291593418|gb|EFF24980.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679] Length = 427 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 89 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFE-- 137 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P A++T I H ++ I+++ +A + ++K IF Sbjct: 138 ---ACEYRRHFLAY--SPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 190 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ LKA IY +G ++N D Q R ++ + S +V G V H Sbjct: 191 GDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 242 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 243 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 298 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 299 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 354 >gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] Length = 497 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 46/338 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVD-- 89 DSR + P + F + G H+DGH FI+ ++ G AG ++ P G+D Sbjct: 37 DSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIER------------PTDGLDNW 84 Query: 90 ----DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 DV A+ LA +A + ++A+TG+ GK+T+ M+ LS+ IG+ Sbjct: 85 IQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACGIKTGLIGTV 144 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGE------IRFLTH-LVRPHI-------AVI 189 H G T+A + L S + + +H LV+ I A+ Sbjct: 145 VYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQGRISGSTYDGALF 204 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++P HL +EE +AK+ +F E L+ I +N D + + L A+ + Sbjct: 205 TNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLAAR-----FPSSL 259 Query: 249 SFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305 ++G AD +++ + + S ++Q+ G+ + V G +N L + Sbjct: 260 TWGLGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGRVALPMTGRFNVENALGAASLCIG 319 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 L + +K L GR +R L+ G ++D Sbjct: 320 LGCSPEAVVKGLETMPQVPGRMERIN--LSNGVTVIVD 355 >gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] Length = 486 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] Length = 479 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 152/365 (41%), Gaps = 23/365 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F A+ G DG +I A+ +GA V+ D A IG +P+ Sbjct: 13 VAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTPDSEARIGG-RVPLV 71 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L ++A T++A+TG+ GKT+ E + + A +G+ Sbjct: 72 MDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSASLGTLGLM 131 Query: 147 I-GVPLTLARMPVD------VDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTI 192 + G P + D V + E G++H G + VR A T + Sbjct: 132 VDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRIKAAAFTNL 191 Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 HL ++ AK +FE +E GT LN D + ++ + + G + I S+G Sbjct: 192 TRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRGHR-ILSYG 250 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + A+ +L + +++ + G++ V +G A N L LG+ D Sbjct: 251 RRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAIATGTPDD 310 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 A ALS GR +R L G +D Y P +++ +VL+ I PH G+ Sbjct: 311 QATAALSRLAGVRGRMERV-AVLANGAAIYVD--YAHTPDALE---TVLNAIRPHTTGKL 364 Query: 372 IAVLG 376 V G Sbjct: 365 WCVFG 369 >gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1] gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1] Length = 482 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 81/378 (21%), Positives = 149/378 (39%), Gaps = 40/378 (10%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155 ++A+ L + + + G+ GKTTT M+ +A+ A +G G Sbjct: 122 RMALLGELLAAGPSVGVIGTHGKTTTTSMIAVAMYGAGLDPSAFVGGNVPEFGGNARTGT 181 Query: 156 MPVDVDFGIFELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213 P + + G + LG E T+ H+ L+ + S +EE + A Sbjct: 182 GPFVAEVDESDRGFALLGCETAVFTNAEDDHVG-------GELATYWSTVEEQHAGFARF 234 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 + ++G + D + L + G + ++G+S AD++ + + + Sbjct: 235 ---VAQSGRVLFCADWPGLDTLCS-----GAREQLTYGQSAGADYRAVNVRPDESGTTFD 286 Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 V+ +G+ + + G H N L L + + D D A +AL+ FH G G+R+ Sbjct: 287 VEFRGERLGEARVSLPGTHNVLNGLAALAVTHLYGGDFDRAARALADFH---GPGRRWEI 343 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--- 389 +G ++D+ Y N + +A+ Q GRR+ V+ QS+ Sbjct: 344 KGERGGALVVDD-YAHNATKVASAVQAARQT-----GRRVRVVFQPHRYLRTQQSWPRLA 397 Query: 390 ---IDLAEVLSL--YNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV 442 +D EVL L S + G H + D + + H VHY + ++ S Sbjct: 398 DALMDADEVLVLDIAAASETPIEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQ 457 Query: 443 DGDVVVVKSSNSCGFYRL 460 GD++V + YR+ Sbjct: 458 PGDIIVTMGAGD--VYRI 473 >gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 486 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 35/294 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P + F A+ G G+ FI A+ +GA V VAS + V + Sbjct: 17 VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFV------VASEPAGQDRVLHHE 70 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144 + AL +LA A R ++ +TG+ GKTTT +L +SI +G+ N Sbjct: 71 NPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTVNYRW 130 Query: 145 ------------NHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + + + LARM V+ E L + R + H+AV T Sbjct: 131 PGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAG--IDIHVAVFTG 188 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKSHALGIKTIYS 249 ++ HL + IE+ AK ++F + +N DD L ++ + Sbjct: 189 LSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEA-----PRVMG 243 Query: 250 FGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G KN +L+ S S ME QG+S + G H AQN+L G Sbjct: 244 YGLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQG 297 >gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] Length = 487 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 147/385 (38%), Gaps = 44/385 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + ++ VN I DSR + + F A+KG DGH +I A+ GA Sbjct: 4 LKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNAGAN 63 Query: 67 LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 ++ T ++V I + + + A N ++ ++ +TG+ GKTT Sbjct: 64 AIICETMPVNLVNGITYVQVKNGNAALAIMASNFYGTPSK---NLKLVGVTGTNGKTTIS 120 Query: 124 EML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFEL 167 +L TI + K + + I + +LA M V+F E+ Sbjct: 121 SLLYQLFKKAGYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFCFMEV 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 SH + + LV A+ T ++ HL E K +F+GL KT N Sbjct: 181 S-SHGIHQKRIEGLVFEG-AIFTNLSHDHLDYHKTFAEYRDTKKLLFDGLPKTAWALTNI 238 Query: 228 DDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD + KAK +KT ADF+ Q E + L+ E+ Sbjct: 239 DDKNGAVMLQNTKAKKQTYALKTY--------ADFR----AQILENQFSGQLLKIDDNEL 286 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A NML +L + ++ LS +GR + Y N ++D Sbjct: 287 WSKLIGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDGRFQYYISGKN--ITAIVD 344 Query: 344 ESYNANPASMKAAISVLSQISPHGE 368 Y P ++K ++ ++ + E Sbjct: 345 --YAHTPDALKNVLNTINALRTGNE 367 >gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 132] gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 493 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F + +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMV 75 P V G+++DSR + P F A+ G PH DGHDFI A+ KGA VV ++ Sbjct: 14 APPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIPEALAKGAIAVVGEREL- 72 Query: 76 ASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 SL +P V D AL LA K ++ ITGS GK+TT +L L + Sbjct: 73 ----SLPVPYLRVGDAREALAHLARHFFGEPDRKLALLGITGSKGKSTTASLLHHLLQAG 128 Query: 134 KKTYACIGSYNNHIG 148 +K A + + +G Sbjct: 129 EKPAALLSTVGLRLG 143 >gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa] Length = 487 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 146/376 (38%), Gaps = 44/376 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DS + P + F + G H DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV T ++ HL +E A+AKA++F + + +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRV-INLDDDFGRRLAGEEQ 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T YS S +A R+ + + + K + +G N+L + Sbjct: 247 DSELIT-YSLTDS-SAFLYCREASPTASPTARRSSIAAKQGLLRSPLLGRFNLSNLLAAV 304 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G + L + ++ L GR +R L G L+ Y P +++ VL Sbjct: 305 GALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGGKPLVVVDYAHTPDALE---KVL 357 Query: 361 SQISPHGEGRRIAVLG 376 + PH R + + G Sbjct: 358 EALRPHAAARLLCLFG 373 >gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 485 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 44/361 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S+ I FFAIKG + DGH FI A++K A ++V + I + Sbjct: 24 IENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKKARVIVCQ--QLPEILPKEVTFL 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D A+ ++A K ++ +TG+ GKTT +L + K I + Sbjct: 82 KVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNGKTTIATLLYHLFRNTKHKVGLISTIA 141 Query: 143 -YNNHIGVP--------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI------- 186 Y N + +TL R + E G++H + +H + H Sbjct: 142 IYINEQKIDTKNTTPDVITLNRRM----HQMVEEGVTHCF-MEVSSHGIAMHRIEGLSFA 196 Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALG 243 + T + HL E + K + F+ L+K N DD F L ++H Sbjct: 197 GGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTLKKDAFALTNIDDKNGNFMLQNTQAHK-- 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y++ ADF+ E ++ + L+ E+ H IG A N+L Sbjct: 255 ----YNYALRTYADFK----ANILENAFSGLVLRIGQQEIWTHLIGQFNAYNLLAIYATA 306 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D + K +S P G R++ ++ G T+I + Y P +++ + + I Sbjct: 307 VLLGMDKEEVAKQISELKPVSG---RFQYFISAGNITVIVD-YAHTPDALQNVLETIKSI 362 Query: 364 S 364 Sbjct: 363 K 363 >gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] Length = 491 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 156/381 (40%), Gaps = 56/381 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + FF I G DGHDF A++KG +V D+ ++++PV Sbjct: 26 ITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDL-----NVAVPVI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V A+ ++ A SK +I +TG+ GKTTT ++ L +K IG+ Sbjct: 81 KVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNGKTTTTHLIEKILRDAEKNTGIIGTMY 140 Query: 144 ----------NNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHL 181 NN L L + + ++V ELG H TH Sbjct: 141 MKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGRVH------GTHF 194 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTI-FLNYDDSFFELL 235 ++AV T ++ HL +E A AK +F L +K+ + LN DD F+LL Sbjct: 195 ---NVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDDTFDLL 251 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + A I S+G NAD + K + E + + + +S V G N Sbjct: 252 ETMTAA----PIISYGIKGNADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYN 307 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + ++LS GR + R L + F ++D Y P S+K Sbjct: 308 ALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFE--RVELEEDFHVIVD--YAHTPDSLK- 362 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +VL I +G+ V+G Sbjct: 363 --NVLETIKEFAKGKVSVVVG 381 >gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum F str. 230613] Length = 483 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 143/368 (38%), Gaps = 32/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P L L ++ D VD+ + E+ L R + V A+ Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K +F+ + + +N DDS+ E K ALG K Y Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G KN D + S + + + + + G + N L ++G + Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + T +AL GR + N G+ ++D Y P ++ ++L+ + Sbjct: 313 PLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367 Query: 369 GRRIAVLG 376 GR I+V G Sbjct: 368 GRLISVYG 375 >gi|69248544|ref|ZP_00604765.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO] gi|257878422|ref|ZP_05658075.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,230,933] gi|257882840|ref|ZP_05662493.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,502] gi|257889379|ref|ZP_05669032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,410] gi|257894392|ref|ZP_05674045.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,408] gi|258616059|ref|ZP_05713829.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium DO] gi|260560011|ref|ZP_05832189.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68] gi|261207887|ref|ZP_05922572.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6] gi|289566955|ref|ZP_06447359.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF] gi|293559957|ref|ZP_06676465.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162] gi|293569017|ref|ZP_06680330.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071] gi|294623289|ref|ZP_06702154.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317] gi|314937785|ref|ZP_07845102.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133a04] gi|314941669|ref|ZP_07848549.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C] gi|314948916|ref|ZP_07852285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082] gi|314950965|ref|ZP_07854032.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A] gi|314992967|ref|ZP_07858363.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B] gi|314996414|ref|ZP_07861457.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133a01] gi|68194390|gb|EAN08897.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO] gi|257812650|gb|EEV41408.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,230,933] gi|257818498|gb|EEV45826.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,502] gi|257825739|gb|EEV52365.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,410] gi|257830771|gb|EEV57378.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,408] gi|260073846|gb|EEW62170.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68] gi|260078270|gb|EEW65976.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6] gi|289161254|gb|EFD09150.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF] gi|291588450|gb|EFF20285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071] gi|291597317|gb|EFF28503.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317] gi|291606045|gb|EFF35471.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162] gi|313589396|gb|EFR68241.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133a01] gi|313592490|gb|EFR71335.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B] gi|313596820|gb|EFR75665.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A] gi|313599560|gb|EFR78403.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C] gi|313642816|gb|EFS07396.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133a04] gi|313644706|gb|EFS09286.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082] Length = 444 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H ++ I+++ +A + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ LKA IY +G ++N D Q R ++ + S +V G V H Sbjct: 208 GDDAYLRKLKANV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371 >gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] Length = 515 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 35/261 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ A GA V+ + + + +P Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVAVLTDPSGAERVAATGLPAL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKT-------- 136 VDD + +LAV + I ITG+ GKTTT ++ L + + T Sbjct: 95 VVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKTARGTDEGGGGRR 154 Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFL 178 IG+ IG + P D G + M SH LG + Sbjct: 155 VGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHALVLGRVDGC 214 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++P H+ S +E+ AKA++F E++ +N DD + L AK Sbjct: 215 VF----DIAVFTNLSPEHMEFHSDMEDYFRAKAQLFT-PERSRLGVVNVDDEYGRRL-AK 268 Query: 239 SHALGIKTIYSFGKSKNADFQ 259 + + T YS +AD++ Sbjct: 269 EAGVPVVT-YSAEGHPDADWR 288 >gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 157/374 (41%), Gaps = 41/374 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GI +S+ IAP F A KG +DG +I A+ GA +V + + I Sbjct: 23 ISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHGATAIVTDIYDPSFKEITQIICK 82 Query: 87 GVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V +V G + A ++ S+ I+ ITG+ GKTTT ++ L + IG+ Sbjct: 83 NVAEVEGRFS--ANFYQMPSQELFIVGITGTNGKTTTSFLVKYLLEQLNLPCGLIGTIEY 140 Query: 146 HIG-VPLTLARMPVDV---------------DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +G + DV + E+ SH + + + H + IA+ Sbjct: 141 ILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEV-TSHALDQKRVEH-IDYDIAIY 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE-----KTGTIFLNYDDSFFE-LLKAKSHALG 243 T + HL +E A+AK ++F L+ K+ I N D +FE +LK G Sbjct: 199 TNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWFETILK------G 252 Query: 244 IKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 IKT I++FG AD + + +++ QG+S IG N L + + Sbjct: 253 IKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNIYNCLAAIAV 312 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ I F P GR + + L+ F +D ++ + ++ A+ LS+ Sbjct: 313 GLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLF--VDFAHTED--ALYKALECLSE 368 Query: 363 ISPHGEGRRIAVLG 376 + +G+ I V G Sbjct: 369 LK---KGKIITVFG 379 >gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. 2_1_7] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 489 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 94/381 (24%), Positives = 150/381 (39%), Gaps = 51/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR I P F A+ G DG FI AVQ GA V+ TD G + P+ Sbjct: 23 ISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWPTGVPTCPLI 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--ALSSIKK----TYACI 140 + AL +A + AITG+ GKT+T + + AL K T Sbjct: 83 LAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQGFKAAAIGTLGLT 142 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL---GMSHL-----------GEIRFLTHLVRPHI 186 G+ + I P PV + G+ L G +H+ G + L HL Sbjct: 143 GAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLEQGRLDGL-HLA---A 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T + HL IE +AK ++F+ L I D + L+A Sbjct: 199 AGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTLQA--------- 249 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG---------IGYHMAQNM 296 I + +N +L + + + L G+ + + H+G G A N+ Sbjct: 250 IRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQADNV 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKA 355 L+ + + + A++ + L H K RG+ R L G +D ++ + A Sbjct: 310 LLAVALAAQDDAEIADILPLLP--HLKGVRGRLERATVLPNGACAYVDYAHTPD-----A 362 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +L+ + PH G+ + VLG Sbjct: 363 LARLLASLRPHARGKLVVVLG 383 >gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 82/371 (22%), Positives = 145/371 (39%), Gaps = 39/371 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I +DSR + P F AI+G DG FI AV +GA +V D L+IP G+ Sbjct: 25 IQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPPLTIPCIGIR 84 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ L++LA + +K ++ ITG+ GK+TT ++ + + +G+ N + Sbjct: 85 DLPARLSELAGYFYEQPANKLDLVGITGTNGKSTTALLVANWRTLLGGKAGVMGTIGNGL 144 Query: 148 GVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193 L A + V + + + L + +H + H AV T ++ Sbjct: 145 FGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAALPFAAAVFTNLS 204 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGK 252 HL +E +AK E+ + +++ + +N DD + L A A+ Sbjct: 205 RDHLDYHGTMEAYGAAKEELLKLVDEPCAV-INADDQLGRQWLAAYPGAVAFSVNGPIAD 263 Query: 253 -------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +++ F + ++ SW L + G N+L +G + + Sbjct: 264 HPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLL-------GRFNVSNVLAAMGAMLV 316 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + + P G R C G L Y P +++ A+ L Sbjct: 317 LGYDFNVLLATAPQLQPVTG---RMEC-FGGGNAPLAVVDYAHTPDALEKALQALRV--- 369 Query: 366 HGEGRRIAVLG 376 H EG+ ++G Sbjct: 370 HCEGQLWCLVG 380 >gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 45/393 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 +V G S V V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCSFIV--VKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTL----ARM-PVDVDFGIFELG 168 +L + + + N+I PLTL ARM ++ E+ Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + R ++ L + T + HL +E AK + F+ L N D Sbjct: 181 -SHSIDQRRISGLSFDG-GIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNAD 238 Query: 229 DS----FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + KAK ++T+ F GK + F+ ++ + G+ EV Sbjct: 239 DKSGLVMLQNTKAKKLTYSLRTLADFKGKILESHFE-----------GTDLIINGR--EV 285 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + H +G A N+L G L D + + LS GR + + L G+ ++D Sbjct: 286 MVHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPL--GYTAIVD 343 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ + ++ G+GR I V+G Sbjct: 344 --YAHTPDALTNVLNGIHEVL-DGKGRIITVVG 373 >gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus caldus ATCC 51756] gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus caldus ATCC 51756] Length = 454 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----LTLARMPVDVD 161 ++A I AITGS GK+T +T L + K + ++G P L A P + + Sbjct: 107 ARAPIAAITGSNGKST----VTTLLGEMAKAAGRRVAVGGNLGTPALDLLPEAGAP-EPE 161 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L H +RP +A I ++P HL +E +AKA IF + + Sbjct: 162 LYVLELSSFQL----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGD 217 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQ 277 T+ LN +D + L AK+ A G++ I FG + AD W + ++ L Sbjct: 218 TLVLNGEDPALQSLPAKAPA-GVE-IRRFGHTPQLDAWADDLALHWPSAAPMPLADIHLP 275 Query: 278 GK 279 GK Sbjct: 276 GK 277 >gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MW2] gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus MW2] gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 494 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYSVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132] gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans ND132] Length = 507 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 95/233 (40%), Gaps = 24/233 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86 + DSR I E F A+ G G D+I +A+ GA +V D+VA + Sbjct: 33 VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VD+ AL +LA A + ++AITG+ GKTTT ++ L+S +G+ N Sbjct: 93 YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTVN 152 Query: 145 NH-----IGVPLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + PLT DVD + E+ L + R + AV Sbjct: 153 YRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAG--LDFDAAV 210 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSH 240 T + HL +E AKA++F + LNYDD + L A+ Sbjct: 211 FTNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQ 263 >gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] Length = 483 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 144/370 (38%), Gaps = 36/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186 N+IG P L L ++ D VD+ + E+ L +L + V Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL E ++K +F+ + + +N DDS+ E K ALG K Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y G KN D + S + + + + + G + N L ++G + Sbjct: 253 TY--GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + T +AL GR + N G+ ++D Y P ++ ++L+ Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365 Query: 367 GEGRRIAVLG 376 +GR I+V G Sbjct: 366 TKGRLISVYG 375 >gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 450 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSACGK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL EE A+AK I + + Sbjct: 162 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D ++++ + + Sbjct: 218 DYLVLNFNQDWAKGMASQTQA----TVVPFSTTEKVD-----------GAYLDGDVLTFR 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ ++V G+ G H +N L T+ + + D T + LS F Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307 >gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] Length = 483 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 144/370 (38%), Gaps = 36/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186 N+IG P L L ++ D VD+ + E+ L +L + V Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL E ++K +F+ + + +N DDS+ E K ALG K Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y G KN D + S + + + + + G + N L ++G + Sbjct: 253 TY--GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + T +AL GR + N G+ ++D Y P ++ ++L+ Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365 Query: 367 GEGRRIAVLG 376 +GR I+V G Sbjct: 366 TKGRLISVYG 375 >gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 10329] Length = 493 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 33/372 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 24 LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +D + L+++A +I +TG+ GKTT +++ + + A +G Sbjct: 84 DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143 Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + N + + TLA + + L +S G I+ + Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T ++ HL +EE A+AK +F + +N DD E+ A + L Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCDQAIINVDD---EVGAAWAKQLTNAI 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304 S + + L + +S + ++ G+ E H IG A N+++ + Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D + + P GR + ++ A N+ + Y P +++ A+ L Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQ-AENRAKVVV---DYAHTPDALEKALQAL---R 371 Query: 365 PHGEGRRIAVLG 376 H +G+ A+ G Sbjct: 372 VHCDGQLWAIFG 383 >gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 122 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 9/118 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSVGK 119 A +V+ S P+ V D L AL+ +A + +R+ A +IA+TGSVGK Sbjct: 64 AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMA-SYYIRNVLIDAKVIAVTGSVGK 115 >gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. AR 15-3] Length = 484 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 158/380 (41%), Gaps = 54/380 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A+KG DG +++ A+++GA +++ + + V +LSIPV Sbjct: 21 ITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFV--FENLSIPVI 78 Query: 87 GVDDVLGALNKLAVAAR--LRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V +V ++LA+AA S+ I +A+TG+ GKT+ + + A IG+ Sbjct: 79 HVSEV---RHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIGTV 135 Query: 144 ------NNHIGV-----PLTLARMPVDV--DFGI----FELGMSHLGEIRFL-THLVRPH 185 + IG P+ L R+ ++ D G+ FE + + R HL Sbjct: 136 GVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLA--- 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLN--YDDSFFELLKAKSH 240 A T + H+ IE+ AK +F + + IF + Y ++++ ++H Sbjct: 193 AAAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVR-QAH 251 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + G++ L + + + +E ++ G N LM Sbjct: 252 ----RKVLTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAA 306 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAA 356 G+ A D ++L GR GK G +D Y P +++ Sbjct: 307 GLAIATNAPPDMVFRSLEKLQGPPGRLELVGK-----TKDGAPVYVD--YAHKPEALE-- 357 Query: 357 ISVLSQISPHGEGRRIAVLG 376 VL + P +GR I V G Sbjct: 358 -QVLLSVRPFTQGRLILVFG 376 >gi|302868924|ref|YP_003837561.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302571783|gb|ADL47985.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 493 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 35/287 (12%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149 A+AA + + T+ A+ G+ GKT+T M+T+ L I + +GS +H G Sbjct: 109 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTGE 167 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + D F I+ RP ++++T I HL+ + + + +A Sbjct: 168 HFVVEADESDRSFLIY-----------------RPFVSIVTNIEADHLNTYGDLATLEAA 210 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 AE + G + DD+ L A G + ++++G+S +AD ++ + + Sbjct: 211 FAEFARLTDPAGFVITCADDAGGRRLAETLRAEG-RRVWTYGESADADLRMSEVVSSAHG 269 Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + +++G+ + + + G HMA N + +L V A AL F R + Sbjct: 270 VRFQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGTFPGVRRRFE 329 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 R A L+ + Y +P SM A+ L +++ G+GR I V Sbjct: 330 RKGAADG----VLVYDEYAYHPTSMTLALQTLREVA--GDGRLIVVF 370 >gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] Length = 482 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 156/374 (41%), Gaps = 45/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G +ID R +AP F A G ++G DFI AV+ GA VV + V V Sbjct: 21 VTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKAGAVAVVARPEAV---------VE 71 Query: 87 GVDDVLGALNKLAVAARLRSKA-----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G V A + A AA T++A+TG+ GKT+T EM ++ A IG Sbjct: 72 GAVHVADAEPRRAFAALAAQFFQPVPETVVAVTGTNGKTSTVEMTRQIWRMAGRSAASIG 131 Query: 142 SY-----NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRP 184 + + + LT P V F G+ G++H+ G +F +R Sbjct: 132 TLGVTTADESVSTGLT---TPDIVTFLSNMTGLAREGVTHVAYEASSHGLSQFRNEGLRV 188 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALG 243 T ++ HL +E+ +AK +F+ + G + + + DD + G Sbjct: 189 IAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVAVVWMDDEWSGRAVEHVRRRG 248 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + R Q + +EV G ++ IG + A N L++ G+ Sbjct: 249 LRLLSVGEQGETIRLLARTPTQLGQ--VLEVAFDGARRKISLPLIGAYQAANALVSAGLA 306 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQ 362 D AL+ P RG+ R A+N+ G +D Y P +++AAI+ L Sbjct: 307 IASGIDAGQVFDALARLQPV--RGRLERAAINRAGAPVYVD--YAHTPDAIEAAIAAL-- 360 Query: 363 ISPHGEGRRIAVLG 376 PH +GR I V G Sbjct: 361 -RPHVKGRLITVFG 373 >gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 499 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 202 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 260 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 261 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQIEVSLNLVGRFNVYNAL 316 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 369 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 370 NVLSTISEFSKGKVITVFG 388 >gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK115] Length = 459 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ AL++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL +E A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D +++E + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----TVVPFSTTEKVD-----------GAYLEGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L + + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNVENALAMIAVAKLRGIDNQTIKEVLSAF 316 >gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] Length = 486 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 150/378 (39%), Gaps = 32/378 (8%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +L++A Q + V+ ++ DSR IAP + FFA+ G DGH +I AV GA Sbjct: 5 QELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTAGAAA 64 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML- 126 VV S+ V + A A + ++ ITG+ GKTTT +L Sbjct: 65 VVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNGKTTTVTLLY 124 Query: 127 --------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSH 171 T+ + + + I + +ARM ++ E+ Sbjct: 125 DLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEYCFMEVSSHA 184 Query: 172 LGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R H + + I HL E AK F+ L K +N DD Sbjct: 185 IVQERIRGLHFTG---GIFSNITHDHLDYHKTFAEYIRAKKLFFDNLPKEAFALINIDDR 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A T+ + ADF+ + + + ME+++ G+ EV H +G Sbjct: 242 NGRVMVQNTRA----TVKTLSLQSMADFRCKILE--THPDGMELRIDGR--EVWVHFLGR 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L +L AD + ++ +S HP GR + R A G ++D Y P Sbjct: 294 FNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAA--DGTTAIVD--YAHTP 349 Query: 351 ASMKAAISVLSQISPHGE 368 +++ + + +I G+ Sbjct: 350 DALEKVLQTVEEIRRPGQ 367 >gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 39/231 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 + + +DSR I P + F A+ G DG FI A+ +GA LV+ D G++S Sbjct: 27 IQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALARGANLVLAQADEQRPHGTVSDIDS 86 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137 I + +D+ L AL A R + T +IA+TG+ GKTT +++T L + + Sbjct: 87 KPIIYLASLDEHLSAL-----AGRFYADHTNRVIAVTGTNGKTTISQLITQWLELMGERA 141 Query: 138 ACIGS----YNNHIGVPLTLARMPVDVDFGIFELG-----------MSH---LGEIRFLT 179 A +G+ + N + L ++V + +L SH G I+ L Sbjct: 142 AVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARYTAMEVSSHGLVQGRIKAL- 200 Query: 180 HLVRPHIA-VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 P IA V + ++ HL ++E A AK +F + I LN DD Sbjct: 201 ----PFIAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQAI-LNVDD 246 >gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] Length = 505 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 86/407 (21%), Positives = 168/407 (41%), Gaps = 61/407 (14%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G S+ + ++G++ S+ + P+ FFA+ G +DGHDFI A+QKG+ + Sbjct: 14 QDLIKYVKG-SLNLE----ISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNV 68 Query: 68 VVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 +V + D+ ++ + + F + + + + + K +I +TG+ GK++ Sbjct: 69 IVCSRDLDFYSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCY 127 Query: 125 MLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-FLTHL 181 + + L IK + +++ G +L + P + EI FL+++ Sbjct: 128 YIYLLLKKRGIKVGFVSTVFFDDGSG---SLIKNP-------YRQSTPESTEIHAFLSNM 177 Query: 182 VRPHI--------------------------AVITTIAPAHLSNFSGIEEIASAKAEIFE 215 V+ + AV T I HL I + K +F+ Sbjct: 178 VKNGVQYAVLESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQ 237 Query: 216 GL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + G +N DD + K +A+ YS K+ ADF + + ++ + E Sbjct: 238 SVSDDAGFGVINLDDVYSSDFK---NAIKKSFTYSL-KNSQADFFVSFIDEKTDSTRFEF 293 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCA 333 +G + +G +N++ L +VS +L D+ + L +GR Sbjct: 294 YYKGIKYFANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMD--SIN 351 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L Q F +ID Y P + + + + + R I+V G E Sbjct: 352 LGQNFSVIID--YAHTPGAFSKLFPIFKRFAIN---RLISVFGSAGE 393 >gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] Length = 520 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 150/370 (40%), Gaps = 38/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--LSIP 84 + G++IDSR I F A++G DGH FI AV +GA + V+ DM A + + Sbjct: 59 IKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQGA-VAVLLEDMPAVMDEKVTYVQ 117 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V ++ G + + R + ++ +TG+ GKTT +L + + Sbjct: 118 VASTEEDAGKVATVFYGNPSR-RLKLVGVTGTNGKTTVATLLYNMFRKFGYKTGLLSTVC 176 Query: 145 NHIG---VPLT------------LARMPVDVDFGI---FELGMSHLGEIRFLTHLVRPHI 186 N+I VP L+RM VD G F SH R ++ L Sbjct: 177 NYIDDKEVPADHTTPDPIELNCLLSRM---VDAGCEYAFMECSSHAIHQRRISGLEFAG- 232 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + T + HL E +AK F+GL K N DD L ++ +KT Sbjct: 233 GIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNADDK-NGLFMVQNTKAAVKT 291 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 YS + ADF+ + + E ++E+ +GK EV IG N+L G +L Sbjct: 292 -YSI--KRMADFRAKILECHFEGMYLEI--EGK--EVGVQFIGKFNVSNLLAVYGAAILL 344 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + A+S GR + + +GF ++D Y P ++ ++ + + Sbjct: 345 GRQPEEILVAMSTLKSVNGRLEPIQSP--EGFTAVVD--YAHTPDALANVLAAIHDVLDT 400 Query: 367 GEGRRIAVLG 376 G I V G Sbjct: 401 KGGHVITVCG 410 >gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alistipes sp. HGB5] Length = 485 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 165/399 (41%), Gaps = 38/399 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSI 83 V G+ DSR++ P + FFA++G DGHDFI AV KGA VV A + +++ Sbjct: 24 VAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPAAVAKGAAAVVCERLPEQTAADVVYVAV 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P D + A S+A ++ ITG+ GKTTT +L + ++ I + Sbjct: 84 P----DAAGALADMAAAFYDHPSRALKLVGITGTNGKTTTVTLLYDLVRALGHKAGLIST 139 Query: 143 YNNHIGVPLTLA--RMPVDVDFGIFELGMSHLG-EIRFL---THLVRP------HIA--V 188 +G A P V M+ G E F+ +H + H A + Sbjct: 140 VVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQERTRGLHFAGGI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + I HL E AK F+ L K N DD ++ + A I+ Sbjct: 200 FSNITHDHLDYHKTFAEYIRAKKLFFDSLSKEAFALTNADDKNGRVMVQNTAA----AIH 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ ADF+ + + + + + Q EV +G A N+L G +L Sbjct: 256 TYSLRSMADFRCKIVEMHPDGMLLRIDGQ----EVWVGLVGRFNAYNLLAVYGAAVLLGF 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D ++A S+ HP GR + R A G ++D Y P +++ I + +I + Sbjct: 312 DRGETLRAASMLHPVSGRFELVRSA--NGVTAVVD--YAHTPDALENVIRTIEEIRTPAQ 367 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + I V G C G+ ++ ++A++ Y + V+ S Sbjct: 368 -KLIVVCG--CG-GDRDRTKRPEMAQIAVRYADTAVFTS 402 >gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured marine microorganism HF4000_APKG2M17] Length = 492 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 146/360 (40%), Gaps = 35/360 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + + IDSR + + F A+KG + DGH FI AV GA +V + + +++ Sbjct: 24 QSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGPDIAL 83 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D AL +LA + + SK + A+TG+ GKTT ++ L + IG Sbjct: 84 ----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFIG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFEL-------GMSHLGEIRFLTHLVRP--------HI 186 + G A ++EL G SH + +H + + Sbjct: 140 TTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHC-SMELSSHAIDQDRIRMRDVDV 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL S E +AK ++F+ L +N DD + + A + + Sbjct: 199 ALFTNLTRDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTTG----S 254 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +FG ++D + +E S +++ + G G + A N+ L Sbjct: 255 VITFGSDDHSDVSFS--IEGNELSGLDLTIDGHRRRF--QLAGTYNASNLAAAYAASRAL 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISP 365 +I ALS P EGR +R + G ++D Y P ++K + + L + P Sbjct: 311 GLSALESIDALSSSPPVEGRFERMQ--FEGGTMVIVD--YAHTPDALKNVLEATLESMRP 366 >gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 494 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYQVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] Length = 494 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYQVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 499 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 147/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 202 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLSTIDKKIAVLNADDPSVEYFKK 260 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 261 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYNAL 316 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 317 AAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 369 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 370 NVLSTISEFSKGKVITVFG 388 >gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 494 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F + +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1058 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 96/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G ++DSR + F A G +G DFI A+ GA +V + + + Sbjct: 598 VLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 648 Query: 87 GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G ++ +LA +AAR + + A+TG+ GKT+ E+ + A IG Sbjct: 649 GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTIAGHKAASIG 708 Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 SY+ + P LAR D+ IFE L + R + + Sbjct: 709 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 764 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 T+ + HL +E +AK +F E + GT + DD + A Sbjct: 765 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIAHVQKR 824 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I G+ A +L + S+ + + +QG+S ++ IG + N L+ G+ Sbjct: 825 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGL 882 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V D+ + AL++ P GR +R + N G +D Y P ++AAI L Sbjct: 883 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 937 Query: 363 ISPHGEGRRIAVLG 376 PH EGR V G Sbjct: 938 -RPHTEGRLWVVFG 950 >gi|148926962|ref|ZP_01810639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- ligase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845046|gb|EDK22143.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- ligase [Campylobacter jejuni subsp. jejuni CG8486] Length = 389 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 56 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIIADIN 115 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A + D I E G G+I +TH ++P I+++ I AHL F +E I S K E Sbjct: 116 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLE 174 >gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus aureus subsp. aureus ST398] Length = 494 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQPLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K I LN DDSF E L+ + Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFSEYLRTVTP 253 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++S+G + A F + ++ LQG S + V Y + + Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] Length = 485 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 141/375 (37%), Gaps = 49/375 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ DSR + F A+ G DGHD+I A+ GA V+ +++ + + Sbjct: 23 IEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGASAVLC--EVLPKMLEEEVTYI 80 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V++ + + +AA + T++ +TG+ GKT+ +L + I Sbjct: 81 QVEN---SAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVATLLFKLFRKLGYKCGLIS 137 Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV---------- 188 + N I +P T P + M G F+ V H V Sbjct: 138 TVQNQIEDEIIPATHT-TPDSITLNALLHEMHQKG-CAFVFMEVSSHSVVQGRISGLHFS 195 Query: 189 ---ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241 T I HL +E AK F+ L T N DD + KA+ H+ Sbjct: 196 GGIFTNITQDHLDFHKTFDEYIKAKKGFFDALPSTAFALTNVDDRNGKVMLQNTKAEKHS 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +K I F K K D L +Q++ EV IG A N+L G Sbjct: 256 YSLKNIADF-KGKVLDCGL-----------FGLQMEIDKQEVWFKLIGQFNAYNLLAVYG 303 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L + + + LS P GR ++ + Q ++D Y P ++K + ++ Sbjct: 304 AAVLLEENPENILTELSQLTPPPGRFEQVISS--QQTVGIVD--YAHTPDALKNVLETIN 359 Query: 362 QISPHGEGRRIAVLG 376 + G R I V+G Sbjct: 360 GLR-QGHERVITVVG 373 >gi|15645360|ref|NP_207534.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori 26695] gi|2313862|gb|AAD07786.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori 26695] Length = 493 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168 +IAITGS GKT+TK L L + +A S N +G+ + + D + I E G Sbjct: 170 VIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIAEAG 229 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 + G+I+ +T L+ PH+ V+ + HL F +E I KAE+ + LEK Sbjct: 230 ARNKGDIKEITCLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKRLEK 282 >gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5] Length = 459 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 149/360 (41%), Gaps = 37/360 (10%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R+ T IAI+G+ GKTTT M++ L G + I V L + ++ G Sbjct: 107 MRNYDTPIAISGTHGKTTTTSMVSHILLE--------GDCDPTISVGGILPAIHGNIRVG 158 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E ++ E FL+ P I+VI + HL F I++I + + E L G Sbjct: 159 NSETFITEACEYTNSFLSFF--PKISVILNMDADHLDFFKDIDDIRHSFRKFAELLPADG 216 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279 T+ +N D +E + + + ++G +AD+ W + S+ V +GK Sbjct: 217 TLIINADTPEYETITRELPC----NVLTYGLEHDADYTAADITWDKYGHPSF-SVLFRGK 271 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + + G H N L + + +L D +K L F G +R++ G Sbjct: 272 KIGSYYLRVPGIHNVSNALAAIAVGRLLDLPNDVIVKGLGSF---TGTDRRFQYKGEIGG 328 Query: 339 FTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID+ Y +P ++A + V PH R A+L + + L+ + H Sbjct: 329 ITIIDD-YAHHPTEIEATLHAAKNYPHQKVWCVFQPHTYTRTKALLPEFAKA--LTLADH 385 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + LA++ + ++ +S + L Y T D + F+ S GD+++ Sbjct: 386 VVLADIYAARETDNLGISSQDLQKQIQEL--GTPCEYFPTFDEIESFLLKSCAHGDLLIT 443 >gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16] gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16] Length = 477 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 146/369 (39%), Gaps = 43/369 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +AI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-----GKSM 281 DD + E+L S K + +G +++A + + Q VQ Q + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVDARAVDGQMHFTVQRQLNGHTEPPL 272 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338 E+V + G H QN L + I + L +KAL FH R +RY G Sbjct: 273 EIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGAGT 332 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+D+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 333 FTLVDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + +S V+ +G + D AL R++ V + E M+ + I ++ GDVV Sbjct: 388 VDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILDAVRPGDVV 447 Query: 448 VVKSSNSCG 456 V + S G Sbjct: 448 VTMGAGSIG 456 >gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli] gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli] Length = 471 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 159/370 (42%), Gaps = 51/370 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ L + T+ IG L R + G + + Sbjct: 116 IAVAGTHGKTTTTSLVASLLGEGGLDPTFV--------IGGKLNSTRTHARLGSGRYLVA 167 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL ++P IA++T I H+ +SG +++ + E L G L Sbjct: 168 EADESDASFL--YLKPMIAIVTNIDRDHMGTYSGNFQQLKKSFLEFLWHLPFYGLAVLCC 225 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD F + ++ I ++G S++AD ++ ++Q +++ V + + K M+++ + Sbjct: 226 DDPFIRSILPDI----MRPILTYGFSEDADIRITSFQQKEIKNYFRVLRPKKKPMDIILN 281 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H A N L + + S L D KALS F G +R+ + G LI Sbjct: 282 LPGEHNALNALAAIAVASELGIKNDVICKALSHF---SGVDRRFQVLGKLTCKHGDALLI 338 Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A + + PH R + D ++ LSQ H+ L Sbjct: 339 DD-YGHHPREIAATLKAIRHAWPDRRLVMTYQPHRYTRTRDLFSDFVKI--LSQVDHLLL 395 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 L++Y +SG A AL +SIH++ + E + L + + DGDV Sbjct: 396 ---LNVYAAGEAVISG----ADSAALLKSIHLNKQINPIHIEDKEKLMSILDEIIQDGDV 448 Query: 447 VVVKSSNSCG 456 ++++ + G Sbjct: 449 LLLQGAGDIG 458 >gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] Length = 516 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSL 81 P + G+S+DSR + + F A+KG +G +I A+++GA V++ + A G L Sbjct: 26 PATPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETADHGQL 85 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S+PV V + ++ +A + A + + AITG+ GKTT ++L + + C Sbjct: 86 SVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAGC 145 Query: 140 IGS 142 +G+ Sbjct: 146 VGT 148 >gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] Length = 482 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 148/373 (39%), Gaps = 29/373 (7%) Query: 22 VPQGFVN---GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 +P+G G++ DSR++ P F A+ G DG FI A++KGA ++V D + Sbjct: 11 LPEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLVPLDAAVAA 70 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++PV + L +A A T+ A+TG+ GKT+ L +++ + A Sbjct: 71 ---NVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALGEEAA 127 Query: 139 CIGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVRP 184 +G+ +G + + G++HL G ++ V+ Sbjct: 128 SLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLDGVKL 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A T I H+ + ++ AK +F E + G LN D + + +A A G Sbjct: 188 RAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVCWARG 247 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + I S G+ F L + +E+ +GK+ V +G A N L+ G+ Sbjct: 248 HR-IISVGRKGKGIF-LAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAAGLA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AL +GR + L G ID Y P +++ + L I Sbjct: 306 IGCGGAAEKVFAALEKLTGAKGRMEEA-AHLPNGASVYID--YAHTPDALE---NALEAI 359 Query: 364 SPHGEGRRIAVLG 376 PH GR V G Sbjct: 360 RPHTAGRLSIVFG 372 >gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] Length = 494 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 31/322 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + V +G +VVVN + + ++ + +P Sbjct: 23 VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKGNVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + T +TG+ GKT+ M+ + + K A +G+ Sbjct: 83 -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + P T+A + VD + + +S G V +A+ Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRLRGVEFDVAI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + + HL +E AK+ +F E L K + LN DD F + L ++ Sbjct: 198 FSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA----SVTP 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++++G + A F + K+ + E S V +G N++ + V Sbjct: 254 YEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRFNISNIMAAMIAVW 313 Query: 305 ILTADVDTAIKALSVFHPKEGR 326 +++ I A++ P EGR Sbjct: 314 SKGTNLNEIINAVTELEPVEGR 335 >gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] Length = 496 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 91/395 (23%), Positives = 158/395 (40%), Gaps = 39/395 (9%) Query: 8 HDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL+A+ G G +G + + D+R++ P AF AIKG +DGH + GA Sbjct: 4 EDLLRAVPSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 L+VV + + + F V A LA R + ++A+TG+ GKTT Sbjct: 64 LMVVEV-LPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTISS 122 Query: 125 MLTIALSSI---------------KKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELG 168 +++ L + + Y I + N + + A M V + E Sbjct: 123 LISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEAS 182 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222 L R + A+ T + HL +E A AK+ +F L E Sbjct: 183 SHALALGRLWATDI--DCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRL 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + ++ + A + YS K + + + Q Q++ + + ++ + Sbjct: 241 AIINADDPYASIMMQATSADVL--TYSLEDPKASAYADQLAVQDGNQTF-RLHYRNQTYQ 297 Query: 283 VVHHGIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 VV +G Y++A M L +V T + + F EGR + R L Q F + Sbjct: 298 VVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQ--RLDLGQEFQVV 355 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D + P +++ + L SP R + ++G Sbjct: 356 VD--FAHTPDAIERVLQELKAQSPK---RLVTIIG 385 >gi|86153443|ref|ZP_01071647.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843169|gb|EAQ60380.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 475 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A + D I E G G+I +TH ++P I+++ I AHL F +E I S K E Sbjct: 202 ANLSQDTQIYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] Length = 493 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 32/388 (8%) Query: 12 QAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 QA+ S+G+ +G V GIS+DSR + P F A+ G G +FI +A++ GA Sbjct: 4 QAVPLSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVA 63 Query: 68 VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+ + + ++ + + D AL++ A T+IA+TG+ GKT+ Sbjct: 64 VLTDAEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123 Query: 124 EM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM--- 169 + + L+++ T G++ + P+TL R GI M Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEAS 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228 SH + R L V A T HL + AKA +F L + GT +N D Sbjct: 184 SHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINID 242 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + A + A G + I + G+ D L + + + +GK+ + + I Sbjct: 243 DPKGVDMVAIARARGCEVI-TVGRD-GGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLI 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L+ G+V AD L GR + + G +D ++ Sbjct: 301 GGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRGR-MQLAATRDNGGAVFVDYAHTP 359 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 + A + L + PH GR +A++G Sbjct: 360 D-----AIATALQAMRPHVMGRLVAIVG 382 >gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] Length = 493 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 22/239 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 ++ +++DSR ++P F AIKG DG FI A+++GA V+ + D G++ + Sbjct: 20 ISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVIADADEDNIAGTVKVINN 79 Query: 84 -PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V +D + L+ +A A K ++ ITG+ GKTT +++ + + + A + Sbjct: 80 AIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTNGKTTISQIIAQWTTLLDQPAAVM 139 Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHI------- 186 G+ N + L P+++ + EL + L + +H LV+ + Sbjct: 140 GTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEVSSHGLVQGRVNALSFDA 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGI 244 AV T ++ HL +E A AK +F +I +N DD + LK HA+ + Sbjct: 200 AVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHSI-INADDQVGCQWLKEMPHAVAV 257 >gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1] gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1] Length = 468 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 134/312 (42%), Gaps = 36/312 (11%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 +GA +VVV N + + +I S +IPV D+L + L + IAITG Sbjct: 63 EGADIVVVSSAIPKANPEYIRAIES-NIPVIHRADML---------SLLMTPKKGIAITG 112 Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 + GKTTT M+++ + IG N IG TL + G + + + + Sbjct: 113 AHGKTTTTSMISLIMEKNGFDPTVIIGGELNDIGGNATLGK-------GEYLVAEADESD 165 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 F+ + PHIAVIT I H+ + + + A + + + K G I D+ + Sbjct: 166 GSFMK--LHPHIAVITNIENDHMDYYKNMNSMKKAFKKFIDNVNKDGFIIFGNDNKHVQE 223 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMA 293 L +++ K Y+ G + +DF + K + +V + K + V H G H Sbjct: 224 LVKETN----KEYYTVGINYPSDFMAKNVKMNGLITHFDVCFREKLLGKVELHVPGLHNI 279 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N + + + + D++ I+A+ F G +R++ + +ID+ Y +P + Sbjct: 280 LNATTAIAVGNRIGIDMEGMIEAIKTFR---GVQRRFQIISDIRGIKVIDD-YAHHPTEI 335 Query: 354 KAAISVLSQISP 365 KA + +P Sbjct: 336 KATLRAARNCNP 347 >gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato Max13] gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato K40] gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] Length = 487 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/403 (21%), Positives = 161/403 (39%), Gaps = 40/403 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ VA R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 PH +GR + + G C G+ + +AEV+ VW++ Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT 400 >gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 483 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 141/377 (37%), Gaps = 47/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+ G DG FI A+ +GA V+ D L + Sbjct: 20 ITGVTADSRKVTSGSLFVALPGTAADGRAFIPQALSQGAAAVLAPQDTPDGAAPLLVRSG 79 Query: 87 GVDDVLGALNKLAVAAR---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 V A+AAR AT +A+TG+ GKT+ +++ A +G+ Sbjct: 80 DV------RRAYALAARGFYGAQPATCVAVTGTNGKTSVAAFCRQIWAALGIKAASMGTL 133 Query: 143 ----YNNHIGVPLTLARMPVDVDFG--------IFELGMSHLG--------EIRFLTHLV 182 + I LT + D G + E G++HL + R L V Sbjct: 134 GVVAQSGSITESLTPPGL-TSPDAGDAARLLATLAEGGVTHLALEASSHGIDQRRLDG-V 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS-- 239 A T + HL + +AK +FE L G T LN D + A S Sbjct: 192 TLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFESLLPRGRTAVLNADSDAYNAFAAASIM 251 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 LG+ + G+ D L + + E + + ++G +V+ G A N L+ Sbjct: 252 SGLGVMGVGERGR----DLSLIERRAVPEGQRLILDVRGDRHDVLLPLAGAFQASNALVA 307 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+ D + AL GR +R + + Y P ++ +V Sbjct: 308 AGLCIAAGEDAARVLHALEKITGAAGRLQRVSGGRGEAYV-----DYAHTPDGLE---TV 359 Query: 360 LSQISPHGEGRRIAVLG 376 L + PH GR I V G Sbjct: 360 LKALRPHATGRLIVVFG 376 >gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] Length = 483 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 143/368 (38%), Gaps = 32/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P L L ++ D VD+ + E+ L R + V A+ Sbjct: 142 NYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLYLDR--VYGVEFKEAI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E ++K +F+ + + +N DDS+ E K ALG K Y Sbjct: 200 FTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKITY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G KN D + S + + + + + G + N L ++G + Sbjct: 255 --GVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLEGI 312 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + T +AL GR + N G+ ++D Y P ++ ++L+ + Sbjct: 313 PLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREFTK 367 Query: 369 GRRIAVLG 376 GR I+V G Sbjct: 368 GRLISVYG 375 >gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM 20731] gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM 20731] Length = 461 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 29/286 (10%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIG 141 +PV DVL A L ++ IA+ G+ GKTTT ML+ S +G Sbjct: 91 VPVIHRSDVL---------AWLMNRHKGIAVAGAHGKTTTSSMLSCITSDCGLDPTIVVG 141 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 N++G + D+ + E S ++F P+IAV+T I HL ++ Sbjct: 142 GIVNNLGSNAASGKS----DWVVAEADESDGSFLKF-----NPYIAVVTNIEDDHLDHYG 192 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQL 260 E I A A+ +++ G L YD+ + + K + S+G S++AD+Q Sbjct: 193 SQENIQKAFAQFVSQIKEDGCAVLCYDNDRVRTIGEATD----KRVISYGIDSQDADYQA 248 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + ++ + +V QG+++ H I G H N L + L ++ + +L Sbjct: 249 KNIIYGTDGTHFDVVYQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILTSLEK 308 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 F G +R+ ++D+ Y +P ++A + Q P Sbjct: 309 F---SGAKRRFETKGKADGIWVVDD-YAHHPTEIQATLKAARQTHP 350 >gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] Length = 495 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 33/371 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR I + F AI G DG FI A+ +GA LV+ GS+ + Sbjct: 27 VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV ++ + L++LA +IA+TG+ GKTT +++ + + A +G+ Sbjct: 87 VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146 Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188 N H+ V+V +FEL +S G ++ V V Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247 + ++ HL ++ A AK +F E T +N DD + HA+G+ Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHE-TRQAIINVDDEVGARWAQQLQHAVGV--- 262 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSI 305 S NA+ L + +S + + + G + ++ IG A N+++ L + Sbjct: 263 -SLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLLS 321 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++D + A P GR + ++ Y P +++ A+ L Sbjct: 322 LGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVV----DYAHTPDALEKALRAL---RV 374 Query: 366 HGEGRRIAVLG 376 H +G+ A+ G Sbjct: 375 HCQGQLWAIFG 385 >gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] Length = 499 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 28/230 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80 N +++DSR+I + F A+ G DG FI A+ GA V+V+TD G Sbjct: 21 NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHSDNA 80 Query: 81 ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134 + I F + + A+ +S T +I ITG+ GKT+T +++ ++S+ Sbjct: 81 EHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140 Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180 + A +G+ N + +TL R D + + + +S G ++ Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 V +AV T + HL +E A+AK +F G LN DD+ Sbjct: 201 AVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FNTLGHGLLNLDDA 249 >gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F + +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ + Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFSEYLRTVTP 253 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++S+G + A F + ++ LQG S + V Y + + Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 486 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 16/246 (6%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A++G+ GKTTT M+ + L + + IG L + D G + Sbjct: 118 VAVSGTHGKTTTTSMVAVVLQHVGADPGYV------IGGKLVTTGLGADAGIGEVIAVEA 171 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + FL ++ P IAV+T + HL N+SGIEEI + A + +E+ T+ + DD Sbjct: 172 DESDGSFL--MLSPKIAVVTNVEADHLDNYSGIEEIHANFASFVDRVER--TLVVGVDDP 227 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIG 289 + + G K + ++G++++AD+++ + + + ++ G+ ++ G Sbjct: 228 GARRVAELARERG-KRVLTYGEAEDADYRVTRVRARGFTTEFTIRTANGEPVDGQLAVPG 286 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N + + L D++ A++ ++ F G +R+ G + D SY + Sbjct: 287 RHNVLNAAAAVAVADELGHDLEVAVEGIADF---AGAARRFEPKGEAGGVAVYD-SYAHH 342 Query: 350 PASMKA 355 P ++A Sbjct: 343 PTEIEA 348 >gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] Length = 493 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 160/390 (41%), Gaps = 36/390 (9%) Query: 12 QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +A+ S+G+ + N GI++DSR + F A+ G G +FI +A++ GA Sbjct: 4 RAVSLSSLGLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAA 63 Query: 68 VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+ + + ++ + + D AL + A AT+IA+TG+ GKT+ Sbjct: 64 VLTDAEGAKIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVS 123 Query: 124 --------EM----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM- 169 EM + + + ++ +A ++ P+TL R + GI M Sbjct: 124 TFVRQIWVEMGLPAVNLGTTGVEGAWAAPLAHTTP--EPITLHRTLAEAARNGITHAAME 181 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLN 226 SH + R L V A T HL E +AKA +F L + GT +N Sbjct: 182 ASSHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVN 240 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + A + A G + I + G+ D L+ + + + +GK+ + + Sbjct: 241 IDDEKGIDIAAIARARGCEVI-TVGRD-GGDLHLQGQRFDATGQDLRFTWRGKTYQKRLN 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L+ G+V AD L GR + + G +D ++ Sbjct: 299 LIGGFQGDNVLLAAGLVIACGADAQEVFDTLPHLTTVRGR-MQLAATRDNGAAVFVDYAH 357 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 + A + LS + PH GR +A++G Sbjct: 358 TPD-----AVATALSAMRPHVMGRLVAIVG 382 >gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 496 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 44/322 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------- 82 +++DSR + + F A+KG DG FI +A+++GA +++ D L Sbjct: 24 MTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSKFAKFN 83 Query: 83 ------IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 V V ++ L+++A A K T+ ITG+ GKTTT ++L + + Sbjct: 84 LDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLG 143 Query: 135 KTYACIGSYNNHI------GVPLTLARMPVDVDFGIF-ELG-------MSHLGEIRFLTH 180 A +G+ N + V T + + + + F ELG +S G +F Sbjct: 144 GKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQFRAE 203 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKS 239 + +A+ T ++ HL + +EE A AK +F L + +N DD E L Sbjct: 204 ALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQV-INADDEIGREWLTQLP 262 Query: 240 HALGIKTI------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +A+ + T + F K+ F L+ + SW +L + IG Sbjct: 263 NAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRL-------IGAFNV 315 Query: 294 QNMLMTLGIVSILTADVDTAIK 315 N+L + L D+ IK Sbjct: 316 NNLLTAFAGLLALGFDIQDLIK 337 >gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 501 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 158/368 (42%), Gaps = 45/368 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F AI G DG++FI AVQKGA ++ D+ V Sbjct: 8 IKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIK----DCIVK 63 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D L L K +I +TG+ GKTTT ++ L K IG+ Sbjct: 64 KVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAGLIGTLF 123 Query: 143 -------YNNHIGVPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 Y + + P T L +M + V + E+ L R H + IA+ Sbjct: 124 IKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNR--VHGIDFDIAI 181 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247 T I HL+ I + ++K ++F+ L + +N+DD + ++L+ K L I Sbjct: 182 HTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILAI--- 238 Query: 248 YSFGKSKNA-------DFQL-RKWKQCSEQ--SWME-VQLQGKSMEVVHHGIGYHMAQNM 296 ++G S + DF + C ++ + +E V+++ V + IG H N Sbjct: 239 -TYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNA 297 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ + +L +D ++++ + + R + + + FT+ID+ Y NP+S +A Sbjct: 298 LLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQ----IIYRDKFTVIDD-YCHNPSSYEAV 352 Query: 357 ISVLSQIS 364 + + + Sbjct: 353 FNAIQNLQ 360 >gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] Length = 493 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 ++ +++DSR + F AIKG DG FI A+++GA V+ +D V G++S Sbjct: 20 ISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQGASAVLAQSDEVNKTGTISFLDQ 79 Query: 84 -PVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 P+ +D + ++ AVA R + K ++ ITG+ GKTT +++ + + K Sbjct: 80 TPIIYLDAL--SIKLSAVAGRFYHAEQRKMQLVGITGTNGKTTISQIIAQWATLLGKPAG 137 Query: 139 CIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRP 184 +G+ N + G P+ + + D++ + L +S G ++ + + Sbjct: 138 VMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAKLTALEISSHGLVQGRVNALNF 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALG 243 AV T ++ HL + A AK +F +I +N DD+ LK +A+G Sbjct: 198 DAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYSI-INADDTVGASWLKELPNAVG 256 Query: 244 I 244 + Sbjct: 257 V 257 >gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED133] gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp. 2_1_36FAA] gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSASGK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL EE A+AK I + + Sbjct: 162 DTLVMELSSFQLMGIEAF----HPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A T+ F ++ D ++++ + + Sbjct: 218 DYLVLNFNQDWAKGMASQTQA----TVVPFSTTEKED-----------GAYLDGDVLTFR 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ ++V G+ G H +N L T+ + + D T + LS F Sbjct: 263 GEAIIKVAEIGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAF 307 >gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 492 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 144/349 (41%), Gaps = 45/349 (12%) Query: 9 DLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL++ IQ ++ Q + GI + DSR + P F AIKG DGH++ AV++ Sbjct: 11 DLVKTIQ-----LINQPNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVER 65 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GA VV + LS+P V D ++ LA A A + + ITG+ GKTT Sbjct: 66 GAVAVVSERSL-----DLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFGIFE 166 T +L L + + IG+ I VP LA+M D G+ + Sbjct: 121 TTTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMR---DEGVTD 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVI--TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-- 222 + M L ++ ++ T + HL E A AK +F L + + Sbjct: 178 VMMEVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRG 237 Query: 223 --IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 LN DD+ L + + A + ++G AD +Q Q+ + QG Sbjct: 238 KVAVLNADDAQTPLYETMTGA----KVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAK 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V IG N+L+ G + ++ KAL + HP +GR +R Sbjct: 294 LPVTVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQR 342 >gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] Length = 485 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 54/379 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSL 81 + I DSR+I + FFAI+G DGH FI A++KGA ++V N +M I + Sbjct: 23 IENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKGAKVIVFDKGFENENMYKDITFI 82 Query: 82 SIPVFGVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + + LAVAA + K +I +TG+ GKTT+ M+ L Sbjct: 83 KVK--------NSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTSTFMIKSILEEAGFK 134 Query: 137 YACIGSYNNHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTH 180 +G+ N+IG P +L + VD VD+ + E+ L R + Sbjct: 135 VGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDR--VY 192 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239 + + + T + HL E ++K +F+ + I NY + + ++ K+ Sbjct: 193 GIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINSVINIDDNYGERILKEIEEKT 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 IK K +D + + S V +G ++ H G + N L + Sbjct: 253 FTYSIK--------KYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNALGS 304 Query: 300 LGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 I++ + + + + L GR + N G+ ++D Y P + Sbjct: 305 --ILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVD--YAHTPDGLD--- 357 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VL +G+ I+V G Sbjct: 358 NVLRTARDFTKGKLISVYG 376 >gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 518 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 157/367 (42%), Gaps = 39/367 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 ++GI+ +S+ + P + F A +G D HD+I A+ GA V++ D + + +IP Sbjct: 43 ISGITDNSKEVTPGKIFVACQGTKVDAHDYIEEAIANGASTVILERADYIDKVKDSAIPY 102 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F V + L KLA + + ITG+ GKTTT ++ ++ + IG+ Sbjct: 103 FKVRNGRKTLAKLASTFYDHPSHRLIVTGITGTNGKTTTTTLIDYIINQLGVKSGLIGTV 162 Query: 144 NNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187 N I L P + + E + E+++LT V H IA Sbjct: 163 NCKINGEEFDSKLTTPPATELYSLIEKMVQK--EVKYLTKEVSSHGLKQDRVSAINFDIA 220 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALG 243 IT I+ H+ ++ +K + F+ L LN DD S + ++K G Sbjct: 221 GITNISYDHMDFHDSWDDYFKSKTKFFQMLSPDSISVLNADDPNAISMGDKTRSKVITYG 280 Query: 244 IKTIYSFGKSKNAD---FQLRKWKQCSEQ----SWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I + + ++N D F+ Q E+ + V+ Q ++++ G H N Sbjct: 281 ISSPGAMITAENVDLKPFETSFTYQIKEELPTVTNKPVRPQSHNLKI--RMPGKHNIYNT 338 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ + + + D + IK F G +R + + FT+ID+ + NPAS+++ Sbjct: 339 LLAISVCIMAGFDPEQVIKTAEQF---PGLFRRLEV-IYKNSFTIIDDCAH-NPASIRSV 393 Query: 357 ISVLSQI 363 +SQ+ Sbjct: 394 FETISQL 400 >gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii NCTC 11218] Length = 495 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 33/371 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR I + F AI G DG FI A+ +GA LV+ GS+ + Sbjct: 27 VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV ++ + L++LA +IA+TG+ GKTT +++ + + A +G+ Sbjct: 87 VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146 Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188 N H+ V+V +FEL +S G ++ V V Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247 + ++ HL ++ A AK +F E T +N DD + HA+G+ Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHE-TRQAIINVDDEVGARWAQQLQHAVGV--- 262 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSI 305 S NA+ L + +S + + + G + ++ IG A N+++ L + Sbjct: 263 -SLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLLS 321 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++D + A P GR + ++ Y P +++ A+ L Sbjct: 322 LGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVV----DYAHTPDALEKALRAL---RV 374 Query: 366 HGEGRRIAVLG 376 H +G+ A+ G Sbjct: 375 HCQGQLWAIFG 385 >gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 489 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 154/374 (41%), Gaps = 45/374 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR + F IKG + DGHD+I A++ GA +V+ ++ I + +I V V Sbjct: 26 VSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSGALAIVIQEEI--KIDNENITVIKVR 83 Query: 90 DVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS----Y 143 + AL +A V SK ++ +TG+ GKTT + L S KK A IG+ + Sbjct: 84 NTKLALASIANVFYNEPSKEINLVGVTGTNGKTTVIHYIKDILESYKKRTAIIGTLGYEF 143 Query: 144 NNHIGV-----PLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIAV 188 N P T + + F F E+ S L + R + V Sbjct: 144 NKEKASIQKVNPTTPESLELQGLFREFINKGAENIVMEVTSSALAKQR--VEYCDFKVGV 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL +E + K ++F+ E G I N DD E + K+ I Sbjct: 202 FTNLSQDHLEEHGTMENYKNEKIKLFKKCE-LGVI--NLDDGIAEEIIQKASC----KIL 254 Query: 249 SFGKSKNADF---QLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 ++G +K AD ++R C + + +++ + + V I G N+L +G Sbjct: 255 TYGINKEADIRATEIRYRNDCIIFKIKFRDIKWRWWCITDVKVNIPGKITVYNVLAAIGA 314 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D+ I LS GR + + LN+ Y P +++ + + + Sbjct: 315 CIGLGMDMGDIISCLSNLRHVPGRLEMIKNNLNKNIIV----DYAHTPDALERLLMMARE 370 Query: 363 ISPHGEGRRIAVLG 376 + +G+ I V G Sbjct: 371 TT---KGKLITVFG 381 >gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM 16294] Length = 481 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 30/282 (10%) Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVD 159 +LRS II ITGS GKT+ K LS K YA S N G+ + + D Sbjct: 153 KLRSMKDLEIICITGSYGKTSIKNFTAQILSHKFKVYATPRSVNTLGGIIADINNNLSQD 212 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE- 218 + + E G G+I +T + P V+ + AH+ F ++ I + K EI + + Sbjct: 213 TEIYVCEAGARQSGDIYEITTFLEPQTVVVGRVGEAHIEYFKSLKNIIATKLEIMQSPKL 272 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 K I + D E K + + KN D L E + +++L+G Sbjct: 273 KQAFIHTSVTDEPHE-----------KVTFFGDEIKNIDAGL-------EGTDFDIELEG 314 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 K++ + +G N+ + + I D I A+ P E R + + G Sbjct: 315 KTLHLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQLIKA----GG 370 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 ++D+ YN N M I + S +GR++ V + E Sbjct: 371 KIILDDGYNGNIDGMLEGIRLCSL----HKGRKVIVTPGLVE 408 >gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. M334] gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. M334] Length = 450 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] Length = 492 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 153/385 (39%), Gaps = 49/385 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ F N IS+DSR+I + F A+ G DG FI A ++GA +V++D A G L Sbjct: 16 PESF-NNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQGAVAALVHSDDPAEHGRLK 74 Query: 83 IPVFGVDDVL-----------GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + G VL GA A RL+ +I +TG+ GKT+ +++ ++ Sbjct: 75 LEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLK----LIGVTGTNGKTSITQLMAQLVA 130 Query: 132 SIKKTYACIGSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTH----- 180 + K + +G+ N + L T + + F L + L + +H Sbjct: 131 LLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGADLCAMEVSSHGLIQG 190 Query: 181 ---LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FF 232 V +AV T ++ HL ++ AK +F+ + +N DD Sbjct: 191 RVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK-FTSLQSGLINLDDEVGRQWLS 249 Query: 233 ELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E AK I + Y+ S D + W E Q ++ +GY Sbjct: 250 EEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQ-----AKLASPLLGYF 304 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N++ LG + ++ D+ A SV K G+ R + G ++D Y P Sbjct: 305 NLSNLVAALGALYLIGYDMRA--MAASVPQLKSVAGRMERFTTDNGVTLVVD--YAHTPD 360 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 +++ A+ L H EG+ + G Sbjct: 361 AIEQALKALRG---HCEGQLWCLFG 382 >gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] Length = 533 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 146/369 (39%), Gaps = 45/369 (12%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDV 91 DSR + P FFAI G DG+ +I AV +GA ++ D+ GS I V+DV Sbjct: 68 DSRRVVPGALFFAIGGLRTDGNYYIEEAVDRGAVAIITEQDL----GSHFPIDYIQVEDV 123 Query: 92 LGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 AL +A R + + +TG+ GKTT ML L IG+ IG Sbjct: 124 RMALAVVAREFYGRPDERLGLTGVTGTNGKTTVS-MLVQHLIGGDDKVGLIGTIRYDIG- 181 Query: 150 PLTLARM---PVDVD----FGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIAP 194 P TL P VD E G + +H V +AV + Sbjct: 182 PRTLPSFRTTPESVDVYALLSQMEDGGCKDAVMEVSSHGVDQKRVYGLDIDVAVFLNLTQ 241 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFELLKAKSHALGIKTIYSF 250 H+ +E AK +F G + G + +N D ++ L + G +F Sbjct: 242 DHIDYHKSMEAYYEAKKGLFIG--RAGAVPHSAVVNMDCAYGRRL--LTELPGDVRALTF 297 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G+ +A + K + ++ + E+ G VV +G + N+L L ++ Sbjct: 298 GEHADAQVRAEKVRLLADHTEFELYWPGGQATVVSPLLGRYNVSNLLAALATGWAKGFEI 357 Query: 311 DTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +K + F RG R L Q + L+D Y ++K A +L +I+P Sbjct: 358 EHLVKRIPSF-----RGVPGRMELIHEKQPYNVLVD--YAHTDDALKNATGMLREITP-- 408 Query: 368 EGRRIAVLG 376 G+ I V G Sbjct: 409 -GKLIVVFG 416 >gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Heliobacillus mobilis] Length = 528 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 94/381 (24%), Positives = 157/381 (41%), Gaps = 47/381 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ ++G++ DSR +AP FF I G DGH+F AV+ GA ++VV L Sbjct: 52 PKQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVE-----RFVDLK 106 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P V +L A A +I +TG+ GKTTT M+ L + + I Sbjct: 107 VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVI 166 Query: 141 GSYNNHIG---------VPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N +G P + LA M D D + E+ L + R L V Sbjct: 167 GTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHRVLG--VNF 224 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTI---FLNYDDSFFELLKA 237 IA T + HL +E +AK ++F L K G + +N DD + Sbjct: 225 DIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSADYFLQ 284 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S + ++G ++A + + W + + VQ G ++++ G N L Sbjct: 285 VSSVPAV----TYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFNISNSL 340 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKA 355 + I+ + + ++AL GR + +++QG F ++D Y P + Sbjct: 341 AAFTVGWIVGMEPEQIVEALQSLRGVPGRFE----SVDQGQPFSVIVD--YAHTPDGL-- 392 Query: 356 AISVLSQISPHGEGRRIAVLG 376 ++VL+ EG+ + V G Sbjct: 393 -VNVLNTAEALAEGKIVTVFG 412 >gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 492 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/381 (24%), Positives = 144/381 (37%), Gaps = 53/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIVVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181 NN + V P TL R + D+ + E+ H+ ++ Sbjct: 138 --NNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 194 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELL 235 IAV T + HL E K +F L LN DD E Sbjct: 195 ---KIAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF 251 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K + A + ++G AD Q + + V +EV + +G N Sbjct: 252 KKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYN 307 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 308 ALAAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE- 362 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +VLS IS G+ I V G Sbjct: 363 --NVLSTISEFSTGKVITVFG 381 >gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] Length = 490 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 89/402 (22%), Positives = 150/402 (37%), Gaps = 62/402 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S + AFFAIKG DGH FI A+ KGA V + + P Sbjct: 22 VKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGASTVFIQDTSIIDTLKRKYPYI 81 Query: 87 GVDDVLGALNKLAVAA-RLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + LA A+ + ++ + +I ITG+ GKT+ +L + IG Sbjct: 82 NIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGKTSVSNLLAQYYENAGYKVGVIG 141 Query: 142 SYNNHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185 + N IG + TL M D + E+ + R + L H Sbjct: 142 TINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVVVAEVSSHAAHQFRVYSTLF--H 199 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAKSHAL 242 + T + HL +E AK E F ++ +N DD + Sbjct: 200 GGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAIASVNIDDPYG---------- 249 Query: 243 GIKTIYSFGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K IY+ K K +F+++ + ++ ++ +GK++ G Sbjct: 250 --KRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFKTKLRGLFNVY 307 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+ ++ + D+D P G R+ + F +ID Y P +++ Sbjct: 308 NLSASISFLIKDGFDIDFLKDKTLDLKPIRG---RFEVVEAKDFIVVID--YAHTPDALE 362 Query: 355 AAISVLSQISPHGEGRRIAVLG-----DMCE---MGELSQSF 388 + L+QI + R I V G D + MG+++Q F Sbjct: 363 NILKSLNQIK---QNRVITVFGAGGNRDRTKRPLMGKVAQDF 401 >gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi N40] Length = 508 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 86/387 (22%), Positives = 157/387 (40%), Gaps = 58/387 (14%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSIPV 85 G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ ++V + D+ + + + + Sbjct: 30 GVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSRDLDFYSSDVTYIKVDD 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT---------KEMLTIALSS---- 132 F + + + + + K +I +TG+ GK++ K+ + + S Sbjct: 90 FNIRKFMSNFSNIFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFF 148 Query: 133 -------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 IK Y + I L+ + + + I E SH ++ + + Sbjct: 149 DDGSGSLIKNPYRQSTPESTEIHSFLS-TMVKNEAQYAILE-STSHGLDLETARLIDVNY 206 Query: 186 IAVI-TTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALG 243 AV+ T I HL I+ + K +F + + G +N DD + K +A+ Sbjct: 207 FAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSDFK---NAVK 263 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---------HMAQ 294 YS KS ADF + S+++ + E H G+ Y + Sbjct: 264 KSFTYSL-KSSKADFFV---------SFIDEKTDSTRFEFYHKGVKYLANVSLLGSFNVE 313 Query: 295 NMLMTLGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N++ L +VS IL D+ + L+ +GR L Q F +ID Y P + Sbjct: 314 NVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAF 369 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCE 380 + + + + R I+V G E Sbjct: 370 SKLFPIFKRFATN---RLISVFGSAGE 393 >gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK564] gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK564] Length = 450 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ochrobactrum anthropi ATCC 49188] gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi ATCC 49188] Length = 490 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+KG DG F+ AV++GA ++ D +I +PV Sbjct: 24 ITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD AL A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ D G+ M SH + R L V+ Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELADEGVTHAAMEASSHGLDQRRLDG-VKLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + IEE AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|314934152|ref|ZP_07841513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653057|gb|EFS16818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 210 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 7/83 (8%) Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R +R++ N T+I+++YNA+P SMKAAI LS + EGR+I +L D+ E+GE S Sbjct: 77 RMERHQTTNN---VTVINDAYNASPTSMKAAIDTLSSM----EGRKILILADVLELGENS 129 Query: 386 QSFHIDLAEVLSLYNISHVWLSG 408 QS H ++ L+ I ++ G Sbjct: 130 QSMHEEVGAYLNNKTIEVLYTYG 152 >gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium kluyveri DSM 555] gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016] gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555] gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 485 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 145/368 (39%), Gaps = 41/368 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + + F I G DGH +I A + GA +V++ + IP V Sbjct: 26 IQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNGAAAIVLSKKVDF------IPDCTVI 79 Query: 90 DVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 +V LA+ + II ITG+ GKTT+ M+ L + +G+ + Sbjct: 80 EVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTSTFMVKSILETAGYKVGVVGTIS 139 Query: 145 NHIG---------VPLTLA-----RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N+IG P +L + VD VD+ + E L R + V A+ Sbjct: 140 NYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVMEASSHSLYLDR--VYGVEFCQAL 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL EE +K +F+ T +N DD + E + A G K Y Sbjct: 198 FTNLTRDHLDFHKTFEEYYKSKIILFKN---TVNSVINIDDKYGE--RVYEDAKGKKLTY 252 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + KNAD K S + +G + + + G + N L + G+ Sbjct: 253 AI--DKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIPGKYNVMNALGSAGVCLAEGI 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D++T K L GR + + N G+ ++D Y P ++ + + + + Sbjct: 311 DLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVD--YAHTPDGLENILKCAREFT---K 365 Query: 369 GRRIAVLG 376 G+ I+V G Sbjct: 366 GKLISVFG 373 >gi|254459232|ref|ZP_05072654.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1] gi|207084125|gb|EDZ61415.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1] Length = 481 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168 I+AITGS GKT+ K +T LS+ + Y+ S N G+ + +P D + I E G Sbjct: 162 IVAITGSYGKTSIKNFVTEILSTKYRVYSTPRSVNTIGGIMRDINESLPSDTEIYICEAG 221 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 G+I +T + P I V+ + AHL F ++ I + K EI + Sbjct: 222 ARESGDIYEITTFLEPQIVVVGKVGEAHLEYFKSLKNIIATKLEIMQ 268 >gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t. morphotype B'] Length = 481 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 37/368 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I DSR F AIKG DGH ++ +A++ GA ++VV+ A + +I V Sbjct: 23 ISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGARVIVVSD---AVFVAANIAVV 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D + +A + ++ +TG+ GKT+T +L L + +K IG+ Sbjct: 80 RVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGKTSTTFLLAEILEAYRKKIGVIGTIE 139 Query: 145 NHIG--VPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N IG V T P DVD I E+ L R I V Sbjct: 140 NRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVSSHALVLNR--VDGCDFDIGV 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL ++ A+AKA++F + + +N D + +++ A I Sbjct: 198 FTNLTQDHLDFHETMDNYAAAKAKLFSMCKIS---IINVDSPYSKVMLDSCKAETI---- 250 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++G A F + + ++ ++ GK +++V G N + + L Sbjct: 251 TYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGEFTVYNTMCAIICAYKLGV 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 +D AL GR + ++ +G+ L+D Y P ++ +VL+ I + Sbjct: 311 PLDFIAXALKNVKGVPGRVQSFQST--KGYSVLVD--YAHTPDGLE---NVLTAIKQFAK 363 Query: 369 GRRIAVLG 376 G + V G Sbjct: 364 GDIVTVFG 371 >gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] Length = 531 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 97/232 (41%), Gaps = 32/232 (13%) Query: 24 QGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 QG + ISI +SR + PQ F AIKG DGH F+ AV+KGA VV + A IG Sbjct: 25 QGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVVTEEPVEAPIG-- 82 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V V D AL +A R K + ITG+ GKTT L + Sbjct: 83 -VAVIRVKDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAEAMLGAAGCKVGI 141 Query: 140 IGSYNNH---------IGVP------LTLARMPVD--VDFGIFELGMSHLGEIRFLTHLV 182 +G+ ++ + P TLARM VD V I E+ L + R Sbjct: 142 VGTVSSRWPGHEKESSVTTPESLELQETLARM-VDAGVTHAIIEVSSHALTQSR--PAFC 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDD 229 + V T I HL +E AK +F+ L ++ T +N DD Sbjct: 199 QFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDD 250 >gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus epidermidis FRI909] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 39/326 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + V +G +VVVN + + ++ + +P Sbjct: 23 VDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKGNVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + T +TG+ GKT+ M+ + + K A +G+ Sbjct: 83 -----DTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMSH----LGEIRFLTHLVRP 184 + P T+A + VD + + +S LG +R V Sbjct: 138 NGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DD F + L Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLA---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ ++++G + A F + K+ + E S V +G N++ + Sbjct: 250 SVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYVGRFNISNIMAAM 309 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326 V +++ I A++ P EGR Sbjct: 310 IAVWSKGTNLNEIINAVTELEPVEGR 335 >gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] Length = 493 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 20/238 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 ++ +++DSR ++P F AIKG DG FI A+++GA V+ + D G++ + Sbjct: 20 ISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVIADADKENIAGTVKVIDN 79 Query: 84 -PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V +D + L+ +A A K ++ ITG+ GKTT +++ + +++ A + Sbjct: 80 AIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTNGKTTISQIIAQWTTLLEQPAAVM 139 Query: 141 GSYNN----HIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHI------- 186 G+ N + L P+++ + EL + L + +H LV+ + Sbjct: 140 GTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEVSSHGLVQGRVNALSFDA 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T ++ HL + A AK +F +I D + LK HA+ + Sbjct: 200 AVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNSIINGDDQVGCQWLKEMPHAVAV 257 >gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis CO72] Length = 520 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 155/379 (40%), Gaps = 51/379 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFI------LHAVQKGAGLVVVNTDMVASIGS-LSIP 84 +DSR I + F +K D + L +V+ A V+ D+ + IP Sbjct: 46 LDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDSAAFVISELDLAGLDLDDIQIP 105 Query: 85 VFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V ++ L L +AARL+ + IIA+TG+ GKTT +++ + + A Sbjct: 106 IISVPNIRTYLGDL-IAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASGISSAV 164 Query: 140 IGSYNN-HIGVPLTLARMPVDV-------------DFGIFELGMSHLGEIRFLTHLVRPH 185 +G+ N +G + A DV + L S G ++ V Sbjct: 165 MGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQGVPII 224 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHA 241 A+ T ++ HL + + AKA++F+ + G + L+ + + F+ A Sbjct: 225 GAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEAADFRI 284 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G YS K NADF + + + +EVQ M + +G N+L ++ Sbjct: 285 IG----YSQQKP-NADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLLASMA 339 Query: 302 IVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L AD+ I L + RG+ R + G F +ID Y P ++K Sbjct: 340 AFTALNPARAADLPNLITQL-----QGARGRMQRASSQTGAF-IID--YAHTPDALK--- 388 Query: 358 SVLSQISPHGEGRRIAVLG 376 VLS + H GR IAV G Sbjct: 389 QVLSSLRRHCTGRLIAVFG 407 >gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] Length = 493 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/372 (22%), Positives = 150/372 (40%), Gaps = 33/372 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 24 LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +D + L+++A +I +TG+ GKTT +++ + + A +G Sbjct: 84 DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143 Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + N + + TLA + + L +S G I+ + Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T ++ HL +EE A+AK +F + +N DD E+ A + L Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCAQAIINVDD---EVGAAWAKQLTNAI 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304 S + + L + +S + ++ G+ E H IG A N+++ + Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D + + P GR + ++ ++D Y P +++ A+ L Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQA--EHRAKVVVD--YAHTPDALEKALQAL---R 371 Query: 365 PHGEGRRIAVLG 376 H +G+ A+ G Sbjct: 372 VHCDGQLWAIFG 383 >gi|227551623|ref|ZP_03981672.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium TX1330] gi|257895775|ref|ZP_05675428.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12] gi|293377610|ref|ZP_06623799.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1] gi|227179186|gb|EEI60158.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium TX1330] gi|257832340|gb|EEV58761.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12] gi|292643610|gb|EFF61731.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1] Length = 444 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H ++ I+++ +A + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ L+A IY +G ++N D Q R ++ + S +V G V H Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 260 TVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371 >gi|157736998|ref|YP_001489681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Arcobacter butzleri RM4018] gi|157698852|gb|ABV67012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Arcobacter butzleri RM4018] Length = 478 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 28/273 (10%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168 I+ IT S GKT+ K L L + K Y S N G+ L + + +P D I E G Sbjct: 159 IVEITASFGKTSIKNYLYHILKNKYKVYKTPRSVNTIAGIVLDVNKDLPADTQIYIAEAG 218 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNY 227 G+I +T + P I VI ++ H+ F +E I + K EI + K G + Sbjct: 219 ARVKGDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILKSPNMKMGFV---- 274 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 ++ I + K N+ L K + W +V++ G Sbjct: 275 -----------HESVPISNSQNITKFPNS---LHIVKSNLDGIWFDVEVGGNIEHFYAPI 320 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+ + + L D+ AL+ E R ++ ++D+S+N Sbjct: 321 LGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIEANGK----IIVDDSFN 376 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 N M A+++ S EGR++ + + E Sbjct: 377 GNLEGMLEAVNICSSY----EGRKVIITPGLVE 405 >gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium phaeobacteroides BS1] gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium phaeobacteroides BS1] Length = 466 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 62/133 (46%), Gaps = 11/133 (8%) Query: 108 ATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165 A II ITG+ GKTTT M+ I LS + S N IGVP + L D + Sbjct: 108 AFIIGITGTDGKTTTSSMVEAICLSGANSREQRVFSAGN-IGVPFSSLVGEMRKGDIAVV 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 EL L R RP +AVIT I P HL + G ++ A AK I+ K T+ Sbjct: 167 ELSSYQLERCRSF----RPDVAVITNIMPDHLDRYGGSMKRYAEAKYRIYAQQRKQDTLV 222 Query: 225 LNYDDSFFELLKA 237 N DD E L+A Sbjct: 223 YNADD---ETLRA 232 >gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] Length = 493 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 83/372 (22%), Positives = 150/372 (40%), Gaps = 33/372 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 24 LVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIID 83 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +D + L+++A +I +TG+ GKTT +++ + + A +G Sbjct: 84 DIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMG 143 Query: 142 ---------------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + N + + TLA + + L +S G I+ + Sbjct: 144 TTGNGFLDDLKEAANTTGNAVEIQHTLASL-AEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T ++ HL +EE A+AK +F + +N DD E+ A + L Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ-HQCDQAIINVDD---EVGAAWAKQLTNAI 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGIVS 304 S + L + +S + ++ G+ E H IG A N+++ + Sbjct: 259 AVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D + + P GR + ++ A N+ + Y P +++ A+ L Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQ-AENRAKVVV---DYAHTPDALEKALQAL---R 371 Query: 365 PHGEGRRIAVLG 376 H +G+ A+ G Sbjct: 372 VHCDGQLWAIFG 383 >gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] Length = 518 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 152/380 (40%), Gaps = 40/380 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S+D+R+++ F A+ G DG FI ++ D + ++PV Sbjct: 31 VSGVSLDNRTLSAGSVFIAVPGDKVDGRAFI-EKCDSATAAILAEADTFGVDLTGAVPVV 89 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + + ++++A TII ITG+ GKTT +L LS ++ + +G+ Sbjct: 90 HIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTTCAYLLAQLLSKLQFSCGMVGTLG 149 Query: 145 ----NHIGVPLTLA----RMPVDVD-----------FGIFELGMSHLGEIRFLTHLVRPH 185 + G P+ L P +D G + +S G + V + Sbjct: 150 FAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQVGAVAMEVSSHGLAQGRVADVDFN 209 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGI 244 A+ T ++ HL + +EE A+ KA +F E+ + +N DD+ +L I Sbjct: 210 GAIFTNLSRDHLDYHASLEEYAATKAALF-AREELSFVVINADDAVGVNILTNGVAPQAI 268 Query: 245 KTIYSFGKSKNADFQLR--------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 YS G + Q +W S Q+ ++ + E+ +G + N+ Sbjct: 269 TYSYSLGGEQALVAQSENTIVAHSIEWG--SSQTVAQLHTPWGAAELATGLVGRYNLSNV 326 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L L + + + GR +R + Q +D Y P +++ Sbjct: 327 LAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSS-EQPLAVFVD--YAHTPDALE-- 381 Query: 357 ISVLSQISPHGEGRRIAVLG 376 VLS+++ + +G+ V+G Sbjct: 382 -KVLSEVAAYTQGKLWVVIG 400 >gi|167838007|ref|ZP_02464866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis MSMB43] Length = 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368 A+KA L F P +GR + R AL T+ID++YNANP SM+AAI VL +Q +P Sbjct: 2 AAVKAGLEAFAPVKGRLQVARAALGSLAGATMIDDTYNANPDSMRAAIDVLAAQSAP--- 58 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 R+ V+G+M E+G+ +FH ++ I ++ G L +A + H+ + Sbjct: 59 --RVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACEAYGAAAR-HFDD 115 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ ++VK S R+++ L E Sbjct: 116 AAALVAALVAANFGARATLLVKGSRFMKMERVVDALANE 154 >gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] Length = 523 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 106/262 (40%), Gaps = 37/262 (14%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 S+G +N +S+DSR + P FFA +G GHD+I AV KGA V V D + Sbjct: 35 SVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGA--VAVAYDPIIP 92 Query: 78 IGSL--------SIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLT 127 + S+ +P+ + D+ L +A LR + ++ +TG+ GKT+ L Sbjct: 93 LSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNGKTSVSHFLA 152 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLV 182 AL + IG+ +GV L A P D +L ++ R+ V Sbjct: 153 QALHQQEAPCGLIGT----LGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRYAVMEV 208 Query: 183 RPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 H A+ T ++ HL + +AK +F G +N DD Sbjct: 209 TSHALEQGRVNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLF-GQPGLRHAVINVDD 267 Query: 230 SFFELLKAKSHALGIKTIYSFG 251 + E A H T+ S+G Sbjct: 268 TAGEAFLA--HLPAEVTVISYG 287 >gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID1] gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID1] gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID1] Length = 445 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KAEIF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 500 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ AF IKG DGH++I A++ GA LVVV+ S I Sbjct: 38 ITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGARLVVVDEFFDTSKIDGKIDYI 97 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ +I +TG+ GKT+T M+ L + + IG+ Sbjct: 98 KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 157 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 N IG A+ P D M + G + + V H + V Sbjct: 158 NMIGSKEIEAQHTTPESYDLQKLFWQMKNEG-VDSVVMEVSSHSLELYRVYDCDFDVGVF 216 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E +AK ++FE +K +N DDS+ K + Sbjct: 217 TNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNADDSW-----GKRIIEMYPDCVT 268 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A + K ++ E+ GK E+ + G N L L + Sbjct: 269 YAKDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIE 328 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +DT K L GR + N+ F +ID Y P + ++++ + EG Sbjct: 329 LDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YAHTPDGL---LNLMKTVDDVAEG 381 Query: 370 RRIAVLG 376 R++ + G Sbjct: 382 RKVLLFG 388 >gi|311031282|ref|ZP_07709372.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. m3-13] Length = 436 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 43/333 (12%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG + K T IA+TG+ GKT+T +L+ + K Sbjct: 77 IEAAKELNIPVIRYPQFLG---------QFMEKYTSIAVTGAHGKTSTTGLLSHVIQGAK 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 T IG R D ++ +FE + FL++ P ++T I Sbjct: 128 PTSYLIGD---------GTGRGVEDSEYFVFEACEY---KRHFLSYY--PDYTIMTNIDF 173 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 H F I+++ SA E+ ++ I DD + + ++AK + IY +G + Sbjct: 174 DHPDYFGSIDDVFSAFQEM--AMQVKKGIIACGDDEYLQKIQAK-----VPVIY-YGFGE 225 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTA 313 DFQ R ++ +E + +V ++ +G G H N L + + VD Sbjct: 226 ENDFQARHVEKSTEGTTFDVYVRNNHYATFKINGYGDHNIMNSLAVIALCHYEEIPVDVI 285 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 L F EG +R+ + G LID+ Y +P ++A I +Q P + IA Sbjct: 286 QSQLLTF---EGVKRRFSEKV-IGSQVLIDD-YAHHPTEIRATIDAANQKYP--DRDVIA 338 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 V +Q+F + AE LS HV+L Sbjct: 339 VF--QPHTFTRTQTFLNEFAESLS--GADHVYL 367 >gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 464 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 95/399 (23%), Positives = 163/399 (40%), Gaps = 59/399 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ ++++S P + F A++G G D+I A+ KG ++V++ + + IP Sbjct: 19 IKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKGCVAILVDSKEIECV----IPSI 74 Query: 87 GVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D++ L LA + K II+ITG+ GKT+ ++ L+ + IG+ Sbjct: 75 RIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVAYFISQLLTKLGIKNGLIGTLGI 134 Query: 146 HIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 L+L P ++ I E+ L + R ++ A+ T Sbjct: 135 THSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSSHALTQDRIAGLNIKQ--AIFTN 192 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTI 247 + HL +++ + K ++F L+ ++ LN DDS F + K K + Sbjct: 193 LTQDHLDYHHTLDKYQATKEKLFV-LDTVESVILNQDDSHYKHFLNITKDKK-----RIS 246 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 YS G DF K EQ ++ VQL E+ +G N+L L V L Sbjct: 247 YSLG-----DFDSIK---TIEQGFL-VQLDHYVFEIPF--LGEFNLLNILAALNSVEALG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D I P GR +R L ID Y P ++ AI+ L + P+ Sbjct: 296 FKRDDIIPLFYQLLPPPGRMQRIEPHL-----AWID--YAHTPDAIGNAITTLKKHYPNF 348 Query: 368 EGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYN 400 + R + G EMG+++ +LA+ + L N Sbjct: 349 KIRIVFGCGGNRDKDKRAEMGKIAS----NLADTIILTN 383 >gi|257884456|ref|ZP_05664109.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,501] gi|257887239|ref|ZP_05666892.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,141,733] gi|257820294|gb|EEV47442.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,231,501] gi|257823293|gb|EEV50225.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium 1,141,733] Length = 444 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H ++ I+++ +A + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ L+A IY +G ++N D Q R ++ + S +V G V H Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 260 TVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371 >gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA 1090] gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae F62] gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria gonorrhoeae FA 1090] gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae F62] Length = 445 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KAEIF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 56/382 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ +GA V + AS+ + S + Sbjct: 17 LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAAVAFEAEGAASMHADSAVL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + G L+ A+A R + + ++ +TG+ GKT+ ++L AL + + +G Sbjct: 77 VPVKGLAGQLS--AIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQALDLLGQPCGIVG 134 Query: 142 SYNN---------------HIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180 + N +GV TLA + V ++ L + + F Sbjct: 135 TLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV T ++ HL +E +AKA++F +N DD+F L A++H Sbjct: 192 ----DVAVFTNLSRDHLDYHGSMEAYGAAKAKLF-AWPNLRCRVINLDDAFGRELAAQTH 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------GYHMAQ 294 + YS +AD + CSE + + ++ + + G+ G Sbjct: 247 ESRL-IGYSL---NDAD----AFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLS 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L +G + L +D +K L GR +R L G L+ Y P +++ Sbjct: 299 NLLAVVGALLGLDYALDEILKVLPQLQGPAGRMQR----LGGGDKPLVVVDYAHTPDALE 354 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 VL + PH EGR + + G Sbjct: 355 ---KVLEAMRPHVEGRLVCLFG 373 >gi|121535922|ref|ZP_01667718.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus carboxydivorans Nor1] gi|121305493|gb|EAX46439.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus carboxydivorans Nor1] Length = 183 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%) Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 VV IG H N L + + L + L F P G R G+ T+I Sbjct: 4 VVLPAIGRHNVYNALAAIAVGLGLGLAPEEIAAGLKKFAPS---GMRQHIEKKAGY-TII 59 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 +++YNA+P SM++AI L++I+ GR+IAVLGDM E+G +++ H + + L+ + Sbjct: 60 NDAYNASPLSMQSAIETLAEIAG---GRKIAVLGDMLELGHVAKEAHRRVGKQLAEIGVD 116 Query: 403 HVWLSG-----FHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 V G V A + +I + E D L +Q+ GD ++VK S Sbjct: 117 TVITVGTLARDIAVTAKACGVACAIACDTHEEAKDVLRQVMQA----GDTILVKGSRGMK 172 Query: 457 FYRLINL 463 +++++ Sbjct: 173 MEKVLDV 179 >gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans OS217] gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans OS217] Length = 479 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ + ++ IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASVYAQAQRDPTFVIGGLLNSAG---TNARLGT----SRYLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++VIT I H+ + G E++ + + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D + + +G + I ++G S++AD Q + Q QS V+ + K + +V + Sbjct: 234 DEINREIMPR---VG-RQIVTYGFSQDADVQALNFNQIGHQSQFVVRRKDKEDLALVLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343 G H N L + + S D ++ +KAL+ F EG G+R++ G L+D Sbjct: 290 PGEHNVLNALAAIAVASEDDIDDESIVKALAEF---EGIGRRFQHLGEFNTANGQVMLVD 346 Query: 344 ESYNANP----ASMKAAIS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P A++KAA + ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYDDFVEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ + G A AL RSI + + + D L + L GD++ Sbjct: 401 LLLDVYSAGEAAIPG----ADGRALCRSIRLRGQIDPIFVASPDQLASVLPDVLQAGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 498 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 100/400 (25%), Positives = 163/400 (40%), Gaps = 60/400 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + P F A++G DGH F AV++GA V+V + VA + + SIP V Sbjct: 26 ITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMVE-EPVAEVPA-SIPQVVVP 83 Query: 90 DV--LGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D AL VA RL + +I +TG+ GKTT ++ L S + IG+ Sbjct: 84 DTRHWSAL----VADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGT- 138 Query: 144 NNHIGVPLTLARMPVD----------------VDFG----IFELGMSHLGEIRFLTHLVR 183 +G L A P+ VD G + E+ L E R V Sbjct: 139 ---VGAKLGQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAG--VS 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKTGTIF--LNYDDSFFELL 235 A T + HL +E A AKA +F G + +++ +N DD + ++ Sbjct: 194 FACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSSVM 253 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S A I ++G + D + R + + + V + E+ IG N Sbjct: 254 AEASAA----PILTYGIERAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYN 309 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + I +++ T I+ +P G+ R Q F +D Y P ++ Sbjct: 310 TLAAVAI-ALVEGLTPTEIQEGIRSYPSVP-GRMERIDEGQPFSVFVD--YAHTPDGLEN 365 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ + + +P R + V+G C G+ ++ +AEV Sbjct: 366 VLASVREFAP---ARVLVVVG--C-GGDRDRTKRPKMAEV 399 >gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria subflava NJ9703] gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria subflava NJ9703] Length = 445 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLAGIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADMWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD+F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHKADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 C +Q + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGCLKQGNEDLIATQDIPLQ-----------GLHNAANVMAAIALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi subsp. equi 4047] gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi subsp. equi 4047] Length = 457 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 31/279 (11%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D + L ++ +A L S+A II ITGS GKTTT M+ L++ + G Sbjct: 94 VRALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNAGNHSALLAG--- 149 Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 +IG P + +A+ D + EL L T +PHIAVIT + P HL Sbjct: 150 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 204 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+ +AK I + + LN D + L K+ A + +S + + + + Sbjct: 205 EDYIAAKRRIQHRMTDKDYLVLNADQELVKSLAQKTKASPV--FFSTKEKVDGAYLADGY 262 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E+ M G G H +N L T+ + + + LS F Sbjct: 263 LYFKEERLMSAAELGVP--------GRHNIENALATIAVAKLRGISNQVISRTLSHF--- 311 Query: 324 EGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAIS 358 RG ++R LNQ T ++S + N + + A+S Sbjct: 312 --RGVKHRLQLVGTLNQ--VTFYNDSKSTNILACQKALS 346 >gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Rhizobium leguminosarum bv. viciae 3841] Length = 489 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 152/374 (40%), Gaps = 36/374 (9%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR + P AF A+ G DG FI+ A +GA + + + + A Sbjct: 24 PAGLLDISGLSSDSRKVMPGNAFVAVAGTKADGAGFIVDAAGRGAAIAIASQAVDA---- 79 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 SIPVF V + L+ A R T++A+TG+ GKT+ T+++ A +++ Sbjct: 80 -SIPVFAVKEPRRFLSIAAARFHGRQPDTMVAVTGTAGKTSVASFTRQIWAYAGHAAAMI 138 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL---GMSH---------LGEIRFLTHLV 182 T + N G T PV + + EL G++H L + R V Sbjct: 139 GTTGVVSPTRNEYGSLTTPD--PVSLHALLAELAGEGVTHAAMEASSHGLDQCRL--DGV 194 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 R A T + H+ +E +AK +F+ L G+ + + D + K+ Sbjct: 195 RLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKAATD 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I + G+ K L++ + + E+ + G+ EV G N L+ G+ Sbjct: 255 AGHDIRTVGR-KGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDIPLAGDFQVANALVAAGL 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + A+ AL GR G +D Y P +++ +VL Sbjct: 314 AMSTGVEAKIAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLGS 367 Query: 363 ISPHGEGRRIAVLG 376 + P GR I V G Sbjct: 368 VRPFTTGRVIVVFG 381 >gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] Length = 500 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 29/230 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---P 84 N +++DSR+I + F A+ G DG FI A+ GA V+V+TD G + + Sbjct: 21 NELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLLGDNA 80 Query: 85 VFGVDDVLGALNKL--AVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSI 133 GV LN+ A+AA+ A II ITG+ GKT+T +++ ++S+ Sbjct: 81 ERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQLVTSL 140 Query: 134 KKTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLT 179 ++ A +G+ N + L TL R + + + + +S G ++ Sbjct: 141 RRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLVQGRV 200 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 V +AV T + HL +E A+AK +F G LN DD Sbjct: 201 DAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR-FSTLGHGLLNLDD 249 >gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/390 (22%), Positives = 154/390 (39%), Gaps = 43/390 (11%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+L + +++ +V I +SRS+A + F AIKG DGHD+I +A+++GA V Sbjct: 6 DILYKVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQGAIAV 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML 126 V + + I V+D AL +A S ++ +TG+ GKTT +L Sbjct: 66 VC--EYLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTTIASLL 123 Query: 127 ---------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMS 170 T+ + K Y + + + + L+ M + V+F E+ Sbjct: 124 FQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFMEVSSH 183 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + R T + + T ++ HL E K F+ L + N DD Sbjct: 184 GIHQKR--TQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNLSSSAFALTNADDK 241 Query: 231 ----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + KAK + G+K ++ Q E S+ + L+ +V Sbjct: 242 NGAIMLQNTKAKQYKYGLKNYANYK------------AQILENSFSGMLLKINDSDVWTR 289 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A N+L +L + ++ +S G R++ +++ T I + Y Sbjct: 290 LIGGFNASNVLAIYATAELLGLEKTEILRLISELESVSG---RFQYLISEENITAIVD-Y 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++K + ++ I E I V+G Sbjct: 346 AHTPDALKNVLETINSIRTKNE-ELITVIG 374 >gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2866] Length = 488 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ VA IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H +A+ Sbjct: 142 GNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKVAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 464 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 16/311 (5%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+AITG+ GKTTTKEM+ LS+ ++ A S N+ L + D + +FE + Sbjct: 105 IVAITGTSGKTTTKEMIKHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAV 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G++ +P I +IT I HL+ +E AK E+ + ++ GT+ +N +D Sbjct: 165 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAED 224 Query: 230 SFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L +K + +K G + F+ + + ++ K+ ++ G Sbjct: 225 MNTKKLDISKFNGRLVKV----GIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGF 280 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESY 346 G H N L + + + A L F R + + L +G L+D+++ Sbjct: 281 GQHQVYNALAAIAAAYEIGVPIPVAANQLQSF-----RQLKKQLQLFEGINHSMLLDDTW 335 Query: 347 NANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + S++AA+ VL+++ G+G ++IAV+G + ++G H E++ + + Sbjct: 336 SITTTSLEAALKVLNEL---GDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLI 392 Query: 406 LSGFHVLALKD 416 G H + D Sbjct: 393 TIGEHARIMAD 403 >gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium novyi NT] gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium novyi NT] Length = 483 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 144/371 (38%), Gaps = 40/371 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I+ + F AI+G + DGH FI A+ +GA ++V + ++ G I V Sbjct: 23 VSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEGAKVIVCSKEIEIKKGITYIKVE 82 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 L + A+ L + + +I ITG+ GKTT+ M+ L S + IG+ Sbjct: 83 NTRKALAIM-----ASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILESAGHSTGLIGT 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPHI-------------AV 188 +N IG A + E+ + I + V H + Sbjct: 138 ISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVYGLEFSQGI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E AK +F+ + + +N DD++ E + K Y Sbjct: 198 FTNLTQDHLDFHKTFENYYRAKLSMFDNAKNS---IINIDDTYGERILNDVPDSSNKITY 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SI 305 S K AD + + + + + K + G + N L + G I Sbjct: 255 S--TEKKADLFAKDIVNHARGAEFVLCYKDKETHINLSIPGIYNVYNALCSAGACLSEGI 312 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 DV ++++ V E K Y + GF +ID Y P ++ ++L Sbjct: 313 SMEDVKKGLESVVVPGRCENATKDY----DLGFDVIID--YAHTPDGLE---NILETARD 363 Query: 366 HGEGRRIAVLG 376 +GR I+V G Sbjct: 364 FTKGRLISVFG 374 >gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL S4-378] Length = 491 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ GA Sbjct: 3 LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223 L + R + +AV ++ HL +EE A AK+ +F L + + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD ++ + A I +FG + ADF + S S +++ Sbjct: 236 AVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFS 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L V AI + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y+ P S+ ++VL I E R V+G Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378 >gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-93-1035] Length = 445 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KAEIF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAEIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] Length = 485 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 84/366 (22%), Positives = 140/366 (38%), Gaps = 31/366 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR + FFAI+G DGH +I V+ GA +V+ +++ I Sbjct: 23 VTALVFDSRKVVKDSVFFAIRGTMSDGHQYIDDTVEAGASVVIC--EVLPEIRRELATYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V++ AL ++A SK +I ITG+ GKTT +L + I + Sbjct: 81 QVENSSVALGQMAANFYGHPSSKLKLIGITGTNGKTTIATLLFKLFRELGYGVGLISTVQ 140 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGE------IRFLTHLVRPHI--------AVIT 190 NHI + + + EL S + + + +H V H V + Sbjct: 141 NHINDVVVPSTHTTPDPIALNELLQSMVDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFS 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I HL + AK F+ L N DD ++ + A T ++ Sbjct: 201 NITHDHLDFHHTFDNYIKAKKAFFDVLPANAFALTNLDDRNGMVMLQNTKA----TKKTY 256 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + ADF+ + E S+ + L +V +G A N+L G +L + Sbjct: 257 ALKQLADFKAK----IIENSFSGLHLDIDQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQ 312 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + ALS EGR + Q ++D Y P +++ +S + I G + Sbjct: 313 LAVLTALSNLTGAEGRFD--YVSSKQQIIGIVD--YAHTPDAVQNVLSTIQDIRK-GTEQ 367 Query: 371 RIAVLG 376 I ++G Sbjct: 368 VITIIG 373 >gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] Length = 493 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/360 (22%), Positives = 143/360 (39%), Gaps = 46/360 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I +DSR + P F AI+G DG FI AV +GA VV D S +P G+ Sbjct: 24 IQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDGEFIPPSTPVPCIGMR 83 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ L+ LA + K ++ ITG+ GK+TT ++ + + +G+ N + Sbjct: 84 DLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVANWRTLLGGKAGVMGTIGNGL 143 Query: 148 GVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITTIA 193 L T + + V + + + L + +H + H AV T ++ Sbjct: 144 FGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALPFAAAVFTNLS 203 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK- 252 HL +E +AK ++ + ++++ + +N DD LG K + + Sbjct: 204 RDHLDYHGTMEAYGAAKEQLLQLVDESNAV-INRDDE-----------LGAKWLEKYPAA 251 Query: 253 ---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGI------GYHMAQNMLMTL 300 S N + +Q + Q ++ QG ++ +G+ G N+L + Sbjct: 252 VAFSVNGPIEHHSGRQLTAQQ-LDFHQQGFRAQINSSWGNGVLSAPLLGRFNVSNVLAAM 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G++ +L D + + P G R C G L Y P +++ A+ L Sbjct: 311 GVMLVLGYDFNELLATAPKLQPVTG---RMEC-FGGGDTPLAVVDYAHTPDALEKALQAL 366 >gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CNPAF512] Length = 486 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 151/366 (41%), Gaps = 30/366 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+S DSR +AP AF A+ G DG FI A +GA + + + + A +IPV Sbjct: 27 ISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQPVDA-----AIPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIKKTYACI 140 V + L+ A R T++A+TG+ GKT+ T+++ A +++ T + Sbjct: 82 AVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVV 141 Query: 141 GSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRPHIAVIT 190 N G P++L ++ ++ D G+ M SH L + R V+ A T Sbjct: 142 SPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKLSAAAFT 199 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + H+ +E +AK +F+ L G + + D + K+ A + + Sbjct: 200 NLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAVKAAADAGHDVRTV 259 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G+ K L++ + + E+ + + EV G N L+ G+ Sbjct: 260 GR-KGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVAP 318 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A+ AL GR G +D Y P +++ +VL+ + P GR Sbjct: 319 KAAMAALEKLVGASGR-LELVGHTKDGALAYVD--YAHKPDALE---NVLNSVRPFTTGR 372 Query: 371 RIAVLG 376 + V G Sbjct: 373 VVVVFG 378 >gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 78/352 (22%), Positives = 148/352 (42%), Gaps = 42/352 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIP 84 V I+ D+R++ F +K + D H F A+++GA ++++ D V + Sbjct: 26 VKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAIKQGATILMIEHEIDQVPE----KVT 81 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + VDD A++ +A + +I +TG+ GKT+ + LS++ + IG+ Sbjct: 82 IIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTGTNGKTSITHFIAQVLSTLGEKTGVIGT 141 Query: 143 YNNHI-GVPLTLARM-PVDVD-----------------FGIFELGMSHLGEIRFLTHLVR 183 N + G L ++ P D +G+ E+ S L + R + + Sbjct: 142 IRNTLEGEKLKTKKINPTTPDAIELQASLKEMLDKGATYGVMEVTSSALAQNRV--YGMA 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + V T + HL +E +AK ++F+ + G + N DD E +K + H Sbjct: 200 YQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFKNC-RIGIV--NQDDLMAEKIKQEGHC-- 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++G K ADF+ + Q ++ GK + G N L T+ + Sbjct: 255 --KVITYGIDKKADFKAEQIHQGLTGVDFKLIYLGKQYSINFPVPGRFSVYNALATIATL 312 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMK 354 L ++ ++AL + G R++ N +G ++D Y +P S+K Sbjct: 313 VSLGYELTNILEALHWINEVPG---RFQIIPNTKGVLVVVD--YAHSPDSLK 359 >gi|293556209|ref|ZP_06674799.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039] gi|294615651|ref|ZP_06695506.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636] gi|291591480|gb|EFF23134.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636] gi|291601628|gb|EFF31890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039] Length = 444 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H ++ I+++ +A + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ L+A IY +G ++N D Q R ++ + S +V G V H Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371 >gi|257898345|ref|ZP_05677998.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15] gi|293571806|ref|ZP_06682822.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980] gi|257836257|gb|EEV61331.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15] gi|291608060|gb|EFF37366.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980] Length = 444 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 46/297 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIGDGTGH-GDP--------QAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H ++ I+++ +A + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYTSIDDVFTAFQTMAGQVKK--AIFAY 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ L+A IY +G ++N D Q R ++ + S +V G V H Sbjct: 208 GDDAYLRKLEADV------PIYYYGVTENDDIQARNIERTTSGSAFDV-YHGDEF-VGHF 259 Query: 287 GIGYHMAQNMLMTLGIVSIL---TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + N+L LG++++ D+ + + F G +R+ + T++D Sbjct: 260 TVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTF---PGVKRRFSEKIVAD-MTVVD 315 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + Y +PA +KA I +++ PH R IA++ + E +L+ ++ Sbjct: 316 D-YAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAEALDLADKVYL 371 >gi|323339597|ref|ZP_08079871.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC 25644] gi|323092992|gb|EFZ35590.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC 25644] Length = 467 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 40/317 (12%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L L V L + T I + G+ GKT+T +L+ LS + T IG GVP Sbjct: 112 LKVLTYPEVVEMLVEETTSIGVAGAHGKTSTTGLLSHVLSGVSPTSYLIGDGTGK-GVP- 169 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 D F +FE E R P ++T I H F+GIE++ A Sbjct: 170 -------DARFFVFEAD-----EYRRHFAGYHPDYTIMTNIDFDHPDYFTGIEDVCDAFQ 217 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ + +K +F+ +D + +K +Y +G +N D + K+ ++ S Sbjct: 218 ELADHTKK--ALFVWGEDKHLQNIKVDI------PVYRYGTEENDDVRAENIKRTTKGSS 269 Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 +V L + + + G H N L + + + D + + L F +G + Sbjct: 270 FDVYLHDEFLGTFDIPLFGKHNVLNSLAVIAVSHLEKIDAEEVKRELLTF-----KGVKR 324 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCE 380 R + + +I + Y +P+ + A I Q PH R +A++ D + Sbjct: 325 RFSEKKVADMVIIDDYAHHPSEIAATIDAARQQYPKKKIIAVFQPHTFSRTVALMDDFAK 384 Query: 381 MGELSQSFHIDLAEVLS 397 +L+ + L E+ S Sbjct: 385 SLDLADKVY--LTEIFS 399 >gi|20806550|ref|NP_621721.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|254478921|ref|ZP_05092283.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|20514987|gb|AAM23325.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|214035143|gb|EEB75855.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 450 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/362 (22%), Positives = 140/362 (38%), Gaps = 78/362 (21%) Query: 107 KATIIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMP-----VDV 160 K + +TG+ GKTTT ++ LS S +K N G+ +L + +D Sbjct: 47 KENKVIVTGTNGKTTTSGLIAHLLSYSGRKVVHNREGANMRTGIATSLIKSSSLTGNLDR 106 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D +FE+ ++L F+ + + P++ VIT L F ++ I + + L K Sbjct: 107 DAAVFEVDEANLS---FVVNEINPNVVVITNFFRDQLDRFGELDLIVNKVKKALSDLSKD 163 Query: 221 GTIFLNYDDSFF----ELLKAKSHALGI--------------------------KTIY-- 248 + LN DD F E L+AK GI K IY Sbjct: 164 SFVLLNADDPFTASIGEDLEAKVLYYGIEDDIKSLKSSSFEQKFCPVCGTKYEYKKIYYG 223 Query: 249 --------SFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + GK + + DF+ + ++ + K V + +G + N+L + Sbjct: 224 HLGNYYCPNCGKKRPSLDFRASDIFLSEDGIKFKLSYKDKIFTVKSNLVGLYNVYNILAS 283 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +L D T +KA+ + P EGR ++ + + LI NP ++ +++ Sbjct: 284 TSAGMLLNLDDSTILKAVENYWPIEGRLQKIQIRGKKAIINLI-----KNPVGFESTLNM 338 Query: 360 LSQISP-----------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 LSQ + +GR ++ L D ++L E LS ++H+ SG Sbjct: 339 LSQFDKPLNLLILINDNYADGRDVSWLWD------------VNLEEFLSKAKVNHIITSG 386 Query: 409 FH 410 Sbjct: 387 LR 388 >gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] Length = 464 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 49/363 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ ++++S P + F A++G +G D+I A+ KG ++V++ + +IP Sbjct: 19 IKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKGCVAILVDSKEIEC----AIPSI 74 Query: 87 GVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--- 142 V+++ L LA +K +I +TG+ GKT+ +++ L + IG+ Sbjct: 75 RVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVTYLISQLLEKLGVKNGLIGTLGI 134 Query: 143 ------YNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 Y N LTL R+ D+ + + E+ L + R ++ AV T Sbjct: 135 THNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISSHALAQNRIAGLNIKQ--AVFTN 192 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGIKTI 247 + HL ++E + K +F L ++ LN DD F ++ K K +T Sbjct: 193 LTQDHLDYHHTLDEYKTTKQRLFT-LNCVKSVILNQDDHHYKHFLKVSKGKK-----QTS 246 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 YS DF K Q Q ++ VQL E+ +G N+L TL V L Sbjct: 247 YSLN-----DFNSIKIIQ---QGFL-VQLDHYVFEIPF--LGEFNLLNILATLNSVEALG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + I + GR ++ + ID Y P +++ AI+ L + P+ Sbjct: 296 FKRNDIIPLIYQLSTPPGRMQQIN-----HYHAWID--YAHTPNALENAITTLQKHYPNF 348 Query: 368 EGR 370 + R Sbjct: 349 KIR 351 >gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3] gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3] Length = 489 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 111/425 (26%), Positives = 180/425 (42%), Gaps = 70/425 (16%) Query: 64 GAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VVV+T + A +L IPV ++L L R R +A+ G+ Sbjct: 80 GADVVVVSTAISADNPELLEAQALRIPVVQRAEMLAEL------MRYRHG---VAVAGTH 130 Query: 118 GKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT ++ ++ IG N G T AR+ + + + + Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNSAG---TNARL----GHSRYLIAEADESDAS 183 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 FL HL +P ++V+T I H+ + G E++ S + L G + DD L Sbjct: 184 FL-HL-QPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVREL 241 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQ 294 K +G K I ++G S++AD Q + Q + S ++ G + MEVV + G H Sbjct: 242 LPK---VGRK-IVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEVVVNLPGQH--- 294 Query: 295 NMLMTLGIVSILTAD-VDTA--IKALSVFHPKEGRGKRYR---C-ALNQGFFTLIDESYN 347 N+L L +++ T D +D A I+AL+ F +G G+R+ C N+G L+D+ Y Sbjct: 295 NVLNALAAIAVATEDEIDDAAIIQALADF---QGIGRRFEQLGCFDTNKGEMVLVDD-YG 350 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +P+ + A I PH R + D E+ LSQ +D +L Sbjct: 351 HHPSEVAATIKAAKAGWPEKRLVMVYQPHRYSRTRDLYDDFVEV--LSQ---VDCLLLLD 405 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451 +Y + G A AL RSI + + L + L GD+V+ + Sbjct: 406 VYAAGESPVPG----ADSRALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVLTQG 461 Query: 452 SNSCG 456 + + G Sbjct: 462 AGNIG 466 >gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] Length = 499 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 55/382 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT ++ LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184 + +G P TL R + D+ + E+ L H+ R Sbjct: 145 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 197 Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFEL 234 IAV T + HL +E K+ +F L TI LN DD E Sbjct: 198 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEY 257 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K + A + ++G AD Q + + V +EV + +G Sbjct: 258 FKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVY 313 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 314 NALAAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE 369 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 370 ---NVLSTISEFAKGKIITVFG 388 >gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 485 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 37/388 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 22 DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYIL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136 Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + + P +D IF+ + +I ++ V H A+ Sbjct: 137 KIGDKVFEAVNTTPESLDLIKIFDKTLKK--KIEYVIMEVSSHSLEIGRVEVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK ++F L+ +N DD + + L + I S Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRL-YDEFIVDNPEIIS 253 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G +N D + S+ +++V+ + + +V +G N L +GI + Sbjct: 254 YG-IENGDLE----GDYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALKIGIS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +K +S GR + C Q + ++D Y P ++ I I Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK--NGS 362 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS 397 R I + G + + +AE LS Sbjct: 363 RIITIFGCGGDRDRTKRPIMAKVAEDLS 390 >gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae bacterium D16] gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae bacterium D16] Length = 460 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++A+TGS GKTTT +++ L KT G +IG PL +P D + + Sbjct: 117 LVAVTGSDGKTTTTTIISEFLKEAGKTVYVGG----NIGKPL----LPDVADMDPEDYAV 168 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + +T P+IAVIT +AP HL +EE +AK IF + + LNYD+ Sbjct: 169 LELSSFQLMTMEQSPNIAVITNLAPNHLDYHHTMEEYTNAKKNIFLHQGEGDRLILNYDN 228 Query: 230 SFFELLKAKS 239 + A++ Sbjct: 229 EVTRSMAAEA 238 >gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] Length = 485 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ ++ Sbjct: 22 NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEM---KYNVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136 Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 +G + + P +D IF+ + +I ++ V H A+ Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ +N DD + Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDDY 236 >gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 93/381 (24%), Positives = 147/381 (38%), Gaps = 59/381 (15%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 VN I DSR + + F AIKG DGH++I A+ GA ++ T +PV Sbjct: 23 MVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAKTIICET----------MPV 72 Query: 86 FGVDDV----LGALNK-LAVAA-----RLRSKATIIAITGSVGKTTTKEML--------- 126 VDDV + NK LA+ A ++ +TG+ GKTT +L Sbjct: 73 TIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISSLLYQLFKKAGF 132 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLT 179 + L S K Y P L V V+F E+ + + R T Sbjct: 133 KVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVSSHGIHQKR--T 190 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235 + A+ T ++ HL E K +F+ L K + N DD + Sbjct: 191 EGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNLPKKAFVLTNVDDKNGLVMLQNT 250 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 KA+ + +KT AD++ Q E + L+ EV IG A N Sbjct: 251 KARKYTYALKTY--------ADYK----AQILENQFNGQLLKIDGSEVWSKLIGDFNAYN 298 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ML G +L + ++ LS +G R++ +++ T I + Y P ++K Sbjct: 299 MLAIYGTAQLLGLEKLEILRLLSELENVDG---RFQYFISKERITAIVD-YAHTPDALKN 354 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + ++++ G I V+G Sbjct: 355 VLDTINKLRT-GNENVITVVG 374 >gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] Length = 469 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 21/222 (9%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138 L IPV D L AL + +A+ G+ GKTTT ML ++L+++ +YA Sbjct: 92 LGIPVVHRSDALAAL---------MTGTRPLAVAGTHGKTTTTSMLAVSLTTLGLDPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + P + A G E+ ++ E H P +AV+ + H + Sbjct: 143 IGGDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 N++ IEEI + + GT+ ++ D L + TI ++G +++AD Sbjct: 193 NYASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYGSAEDADV 252 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++RK S + V + GK + G H A N + L Sbjct: 253 RVRKVSPRGLTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAAL 294 >gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus RF122] gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus RF122] Length = 494 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans PV-1] gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans PV-1] Length = 458 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 94/400 (23%), Positives = 162/400 (40%), Gaps = 53/400 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132 +A+ IPV ++L L ++ +A+ GS GKTT ++ + + Sbjct: 83 IAAAEKRGIPVIPRAEMLAELMRMKQG---------VAVAGSHGKTTMTSLIAHGMEAAG 133 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + TY IG G L P + + E S +R P IAV++ I Sbjct: 134 MDPTY-IIGGRLTATGSNARLGASP----WLVAEADESDGSFLRL-----SPTIAVVSNI 183 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 P HL ++ + A + G + L+++ L+ H K + ++G Sbjct: 184 DPEHLDHYGDFATLQEAFRTFVNLVPFYGRVVLHHEHPHVAALRLGLH----KPVTTYGS 239 Query: 253 SKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV 310 S AD L + + SE Q + + ++ H + G H A+N L + ++ L D+ Sbjct: 240 SLQADLHLLESRAGSEGQCFTAASREHGNLGEFHLPMPGRHNAENALAAMAVLMDLGIDI 299 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAA--------IS 358 +T AL+ F + R +R C G ++D+ Y +P A++ AA IS Sbjct: 300 ETIRSALASFEGIQRRFQRTSC----GTGVMVDD-YAHHPREVLATLVAARDCWPERHIS 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 V+ Q PH R ++ D MG + + L L +Y S + G + AL + Sbjct: 355 VIFQ--PHRFTRTRDLMDDF--MGAFDTANEVSL---LPIYAASEAAIEGVNSQALCQGM 407 Query: 419 PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 H H S E +D ++ L G +V++ + S G Sbjct: 408 LARGHRHVSLLENLDEAAAAVREQLAAGHIVLLMGAGSIG 447 >gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis SK2] gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis SK2] Length = 474 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 84/364 (23%), Positives = 156/364 (42%), Gaps = 40/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + +A + + T+ IG N G L + + + Sbjct: 119 IAVAGTHGKTTTTSLTAAIMAEAGLDPTF-VIGGRLNSAGTNARLGQ-------SRYLVA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P A++T + H+ + G ++ + E L G + Sbjct: 171 EADESDASFL-HL-QPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCV 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHH 286 DD L + + + + +G S++AD + +Q + V+ +G+ ++V + Sbjct: 229 DDPVVRKLLPRVN----RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLI 342 G H N L + + + A + I+ L+ F G G+R+ + G TL+ Sbjct: 285 MPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNF---TGVGRRFDVQGDYHFDGGSATLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P + A I + + P GRR+A+L +Q + D EVLS ++ Sbjct: 342 DD-YGHHPREVAATIDAIREGWP---GRRLAMLFQPHRYTR-TQDLYEDFVEVLSGVDVL 396 Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVVKSS 452 V+ +G + D AL RS+ + + D L + S L +GD++V + + Sbjct: 397 LMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGA 456 Query: 453 NSCG 456 + G Sbjct: 457 GNVG 460 >gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae JJA] gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae JJA] Length = 450 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 452 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 10/158 (6%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D + L ++ +A L S+A II ITGS GKTTT M+ L++ ++ G Sbjct: 90 VCALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNAGNQSALLAG--- 145 Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 +IG P + +A+ D + EL L T +PHIAVIT + P HL Sbjct: 146 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 200 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 E+ +AK I + + LN D + L K+ A Sbjct: 201 EDYIAAKWRIQHRMTDKDYLVLNADQELVKSLAQKTKA 238 >gi|294784925|ref|ZP_06750213.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium sp. 3_1_27] gi|294486639|gb|EFG34001.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium sp. 3_1_27] Length = 432 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 174/426 (40%), Gaps = 60/426 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H DG +F + K G+ N V + I + +D++ Sbjct: 32 DKKAMTSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + +++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 79 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLS 131 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P+I++I + P H+ ++ +E K Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270 I + + N DD E ++ + K I S K K AD ++ K C E S Sbjct: 188 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICYGENS 243 Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++V +L K G H +N L + IL D + + L + P E R + Sbjct: 244 IIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTEL 294 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N G I++S N S K AI I + G + +L+ Sbjct: 295 F---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP--- 340 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 LAE++ NI V+L G ++ L + + Y + + +++SL D Sbjct: 341 --LAEMIK-ENIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFT 394 Query: 450 KSSNSC 455 K SN Sbjct: 395 KESNEV 400 >gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. PCC 7002] gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp. PCC 7002] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 37/376 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIG 79 Q V G++ +S+++ P + F + G DG +F A++ GA VV+ + + A+ G Sbjct: 24 QQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFWQGAIEAGAIAAVVSPEALEKFPATKG 83 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKK 135 IPV D V+ +A K T ++ +TG+ GKTTT ++ L + ++ Sbjct: 84 ECVIPV--ADPVIACAE---IANLFYEKPTASLKLVGVTGTNGKTTTSHLIEYFLQAAQQ 138 Query: 136 TYACIGS-YNNHIGV-PLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPH--- 185 A IG+ Y G + P +D E G +H + +H + + Sbjct: 139 PTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNTH-AVMEVSSHALHQNRVK 197 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV T + HL +E+ AKA +F G +N D+ + + L +H Sbjct: 198 GCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEYCHGRAVVNLDNPYGDRL---AH 254 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG K + AD + + + ++ ++E +G +N++ + Sbjct: 255 KLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTVEFTSPLVGQFNLENVMAAI 314 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D++ I L F GR +R A +Q ++D Y P S++ ++L Sbjct: 315 GAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVIVD--YAHTPDSLE---NLL 369 Query: 361 SQISPHGEGRRIAVLG 376 P + I V G Sbjct: 370 KASRPFIAKKMICVFG 385 >gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] Length = 410 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL +EE A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A I +FG + ADFQ K S S ++ + Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AIK + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378 >gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 487 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 84/403 (20%), Positives = 161/403 (39%), Gaps = 40/403 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 PH +GR + + G + +S ++ E L+ VW++ Sbjct: 362 PHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLA----DGVWVT 400 >gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria innocua Clip11262] gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262] Length = 491 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ GA Sbjct: 3 LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223 L + R + +AV ++ HL +EE A AK+ +F L + + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD ++ + A I +FG + ADF + S S +++ Sbjct: 236 AVLNADDKESVRMQTATAA----HIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFA 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L V AI + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y+ P S+ ++VL I E R V+G Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378 >gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 528 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 98/423 (23%), Positives = 161/423 (38%), Gaps = 90/423 (21%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L Q Q H+ V G+SI+S+++ ++ FFAIKG + DG+DFI A+ + A LV Sbjct: 4 NLKQLFQQHN--------VKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALV 55 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + I V V+DV AL + + + A+TG+ GK++ + Sbjct: 56 ITDNKKNIVIDK----VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQ 111 Query: 129 ALSSIKKTYACIGSYNNHI--------GVP-------LTLARMPVD-----VDFGIFE-- 166 S + K A IG+ I VP L+ ++ + +++ FE Sbjct: 112 TYSLLGKKTASIGTIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEAS 171 Query: 167 ---LGMSHLGEIRF----LTHLVRPHIAVITT----------IAPAHLSNFSGIEEI--- 206 L + LGEI+ T + H+ T + HLS F+ EE Sbjct: 172 SHGLDQARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGD 231 Query: 207 --------ASAKAEIFEGLE------------------KTGTIFLNYDDSFFELLKAKSH 240 S +A+ GL +G LN D E +K H Sbjct: 232 TERRTAAYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLH 291 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 IK I + GK D ++ + + + + IG A N+L+ Sbjct: 292 NHNIKFI-TVGKK--GDLEITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAA 348 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V D + I+ L+ P +GR +R N F Y+ P +++ A++ L Sbjct: 349 LSVHYTGFDFNKIIEILTQVKPVKGRMERID---NTNIFV----DYSHTPDALEKALTEL 401 Query: 361 SQI 363 I Sbjct: 402 KNI 404 >gi|257869275|ref|ZP_05648928.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2] gi|257803439|gb|EEV32261.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2] Length = 444 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 42/295 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TGS GKT+T +L+ LS ++ T IG H G P + +F FE Sbjct: 106 TSIAVTGSHGKTSTTGLLSHVLSGVRPTSFLIGDGTGH-GDP--------NAEFFSFEA- 155 Query: 169 MSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P A++T I H + I+++ SA + + ++K IF Sbjct: 156 ------CEYRRHFLAYSPDYAIMTNIDFDHPDYYQSIDDVFSAFQSMAKQVKK--GIFAF 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD++ L+A IY +G + + D Q + ++ + S +V + +++ V Sbjct: 208 GDDAYLRKLEADV------PIYYYGVNDDDDVQAKNIQRTTTGSEFDVYIHNENIGHFVL 261 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + + D+ + + F + R + A T++D+ Sbjct: 262 PAFGQHNINNALGVIAVAYKEGLDMTEVAEEMLSFPGVKRRFSEKKVAD----MTIVDD- 316 Query: 346 YNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 Y +PA ++A I +++ PH R IA++ + E +L+ S ++ Sbjct: 317 YAHHPAEIRATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAEALDLADSVYL 371 >gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] Length = 478 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 129/323 (39%), Gaps = 45/323 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F AI G +DGH FI A+ G +VV D+ + G I Sbjct: 23 ITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANGTNTIVVTEDVSQNEG---INYI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +++ V K +I +TG+ GKTTT M++ L + IG+ Sbjct: 80 KVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTASMISHILEHLNSPCTNIGTNG 139 Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183 I P T + ++ V+ +D + E L + L I F Sbjct: 140 TFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGIDF------ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV ++ H+ +E AK +FE +K N DD + KA+ Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + Y+F +DF+ + + E+ K+++ V + N + + V Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIVAV 300 Query: 304 SILTADVDTAIKALSVFHPKEGR 326 ++L ++ K+L F E R Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323 >gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 487 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 96/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ VA R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T + + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSAAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 PH +GR + + G C G+ + +AEV+ VW++ D PR Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405 Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447 SE +F I+ V D V Sbjct: 406 --SEAPTNIFDDIRPGFVAADKV 426 >gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] Length = 487 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 152/373 (40%), Gaps = 38/373 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G +DG I A+Q+GA V + + +P+ Sbjct: 17 LIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAVAYEVEGATVLPITEVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYNN------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP--------HIA 187 + + G+ T + + G + + + +H + +A Sbjct: 135 TLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A AKA++F +N DD F L A+ + T Sbjct: 195 VMTNLSRDHLDYHGTMEAYAEAKAKLF-AWNDLKCRVVNLDDDFGRQLAAEKRESRLITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIV 303 S + ++ ++ + V QG+ HH +G N+L +G + Sbjct: 254 SLLDSSAYLYVREAQFDDHGVRATL-VTPQGE-----HHLRSTLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R L G L+ Y P +++ VL+ + Sbjct: 308 LGLDYALDEILKVLPKLEGPAGRMQR----LGGGTQPLVVVDYAHTPDALE---KVLTAL 360 Query: 364 SPHGEGRRIAVLG 376 PH +G+ + + G Sbjct: 361 RPHVKGQLLCLFG 373 >gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] Length = 490 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 119/316 (37%), Gaps = 26/316 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR P + F A+KG DGH FI +Q G +VV T + + + Sbjct: 29 INEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGISALVVET--IPENVPDQVTIV 86 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL LA A + T++ +TG+ GKTTT +L S + + + Sbjct: 87 QVANSAQALGFLASAFYEHPSHQLTLVGVTGTNGKTTTVTLLYDLFSGLGYKCGLLSTVE 146 Query: 145 NHIG--VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRP--------HIAVIT 190 N I V + P V M G E F+ +H V A+ T Sbjct: 147 NRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEVSSHAVDQGRIAGLDFKGAIFT 206 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I HL + AK F+ L K +N DD ++ + A ++ + Sbjct: 207 NITHDHLDYHLTFDNYIRAKKSFFDQLSKRAFALVNIDDKRGMVMTQNTAA----SVNRY 262 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + A+F+ R E S + L + + IG A N+L +L D Sbjct: 263 SLRQMAEFRAR----IIENSLTGLHLDIDNQDFYGRLIGEFNAYNLLAVYATAVLLEQDK 318 Query: 311 DTAIKALSVFHPKEGR 326 + LS EGR Sbjct: 319 VETLTQLSRLKAAEGR 334 >gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA1] gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA1] gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA4] gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA1] gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA3] gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL067PA1] gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA1] gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA2] gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA1] gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA3] gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA2] gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA1] gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA2] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 112/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186 + G L AR P D G+F E G S + I +H + + Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDV-VIEVSSHALALQRVDGTCFDV 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280 >gi|227502956|ref|ZP_03933005.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227076307|gb|EEI14270.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length = 80 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%) Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ NN IGVP+TL R+ + D+ + ELG +H GEI + L RP A++ +A AHL F Sbjct: 10 GNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGF 69 Query: 201 SGIEEIASAKA 211 + +A AK Sbjct: 70 GSLAGVAKAKG 80 >gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] Length = 505 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 29/228 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIP 84 + GI DSR I F A+ G DGH+FI +AV GA +++ D+ + I Sbjct: 21 IRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYTNTTEIT 80 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V+D+ L +A ++K I+ ITG+ GKTT+ + L +I + A IG+ Sbjct: 81 FVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTS----SFILENILEKTARIGT 136 Query: 143 YNNHI---------GVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186 N I P +L + + D+ I E+ SH EI + +++ Sbjct: 137 TGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVS-SHALEIGRV-DMLQFDS 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDDSF 231 A+ T + HL +E +AK ++F L G +N DD + Sbjct: 195 AIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEY 242 >gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans DSM 684] gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans DSM 684] Length = 456 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 45/340 (13%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138 L +PV ++L L +L IA+ G+ GKTTT M+ LS I T A Sbjct: 87 LLVPVIPRAEMLAELMRLKYG---------IAVAGTHGKTTTTSMVATLLSHGGIDPT-A 136 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +G N +G L + +F + E S G LT P IAV+T I HL Sbjct: 137 VVGGRLNALGSNAKLGQG----EFMVVEADESD-GSFLKLT----PTIAVVTNIDEDHLD 187 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 +SG++EI + + G L DD+ + L + K ++G + ADF Sbjct: 188 YYSGMDEIRGVFLDFINKIPFYGLAVLCLDDANIQTLLPQVQ----KRYVTYGLTPQADF 243 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + + + V + + + + + G H N L +L + L + T + Sbjct: 244 SATEIEHRAGGTEFTVHFRQEKLGRIRLEMPGRHNVLNALASLAVARELDVPMKTICEGF 303 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGE 368 F G +R++ L+ + D Y +PA +KA +S V+ PH Sbjct: 304 ESF---AGVQRRFQIKLDDEVMVVDD--YGHHPAEIKATLSAARNGWDRRVVVIFQPHRY 358 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 R A+ D ++ + D+ V+ +Y S + G Sbjct: 359 SRTQALFDDF-----VTAFYQADVLLVMDVYAASEAPIEG 393 >gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus influenzae F3031] gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae F3031] Length = 488 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ VA IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + + A +G+ Sbjct: 82 VKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA1] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 112/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186 + G L AR P D G+F E G S + I +H + + Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDV-VIEVSSHALALQRVDGTCFDV 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280 >gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] Length = 533 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 112/282 (39%), Gaps = 49/282 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---------------N 71 V+GI +DSR I P + F A G DG +I AV GA +V+ N Sbjct: 35 VSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVDGGATVVLFEQNDSETILETLLNDN 94 Query: 72 TDMVASIGSLS-IPVFGV----DDVLGALNKLA-----VAARL----RSKATIIAITGSV 117 + AS +LS + G+ + VL + L+ +AAR +K +++ +TG+ Sbjct: 95 QQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQVSHIAARFYGNPTNKMSVVGVTGTN 154 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ ++ AL ++ + + N L I L +L + Sbjct: 155 GKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSKLQATENTTPDAIAIQRLAAEYLARKNY 214 Query: 178 -LTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTG 221 +T V H IAV T ++ HL S +E AK ++F E LE Sbjct: 215 HMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDYHSDMESYFQAKRQLFIREELE--- 271 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 +N DD + L A+ + I + KN D + W Sbjct: 272 AAVINADDEYGRRL-LTDDAVACRKIAFSCEQKNEDLNIENW 312 >gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] Length = 505 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83 ++G++ S+ + P FFA+ G +DGHDFI A+Q G+ ++V + DM ++ + + Sbjct: 28 ISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRDMDFYSPNVTYIKV 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130 F + + + + + K +I +TG+ GK++ + + L Sbjct: 88 DDFSIRKFMSNFSNVFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146 Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTH 180 S IK Y + I L+ + V + I E SH L R + Sbjct: 147 FFDDGSGSLIKNPYRQSTPESTEIHAFLS-NMVKNGVQYAILE-STSHGLDLKTARLID- 203 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239 V AV T I HL I+ + K +F + + G +N DD + K Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSEFK--- 259 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +A+ YS KS ADF + + + + E +G + +G +N++ Sbjct: 260 NAVKKSFTYSL-KSSQADFFVSFINEKIDSTRFEFYYKGVKYFANVNLLGSFNVENVMAA 318 Query: 300 LGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +VS IL +D+ + L +GR L Q F +ID Y P + Sbjct: 319 LILVSQILNSDIQDIVDKLVCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFP 374 Query: 359 VLSQISPHGEGRRIAVLGDMCE 380 + + + + R I+V G E Sbjct: 375 IFKRFATN---RLISVFGSAGE 393 >gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum ATCC 12472] gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 464 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 154/368 (41%), Gaps = 44/368 (11%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + L + + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLTASVLGAAGLDPTFV--------IGGKLTAAGTNAKLGLGEFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P +AV+T I H+ + +++ A + + + G L Sbjct: 160 EADESDASFL-HLT-PVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCV 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284 DD ++ + K + ++G +AD + + Q +V ++ ++ +V Sbjct: 218 DDPNVREIRERV----TKPVTTYGLDDSADIYAENVRAAAGQMHFDVVVKNGAITRFPLV 273 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFF 339 + G H N L + I A ++ K LS F G G+R++ A + G F Sbjct: 274 LNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEF---AGVGRRFQRYGEVKAQDGGSF 330 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 TLID+ Y +P M A ++ + P RR+ +L ++ D +VLS Sbjct: 331 TLIDD-YGHHPVEMAATLAAVRGAFPD---RRL-LLAFQPHRYTRTRDLFEDFVKVLSGV 385 Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 + +S V+ +G + D AL R++ V + E + + I + DGDVVV Sbjct: 386 DALLLSEVYAAGEAPIVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVV 445 Query: 449 VKSSNSCG 456 + S G Sbjct: 446 TMGAGSVG 453 >gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/308 (24%), Positives = 129/308 (41%), Gaps = 32/308 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + TY G N+ + AR+ G + + Sbjct: 122 IAVAGTHGKTTTTSLVASVLAEGGLDPTYVIGGRLNS----SASHARL----GSGRYLVA 173 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I HL + G +++ E L G L + Sbjct: 174 EADESDASFL-HL-KPMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYGLAVLCH 231 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD L + + + S+G +++AD + +Q ++ V + V + Sbjct: 232 DDPVLRDLGPEI----ARQVRSYGFAEDADLRAVDIEQSGRRTRFTVVDGEATFPVEVNL 287 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343 G H QN L + + L DV +AL F +G G+R++ TL+D Sbjct: 288 PGRHNVQNALAAIAVARELHVDVAAIQRALQRF---QGIGRRFQDHGTLRFGDARVTLVD 344 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P + A + + P GRR+ V+ F D A VLS + Sbjct: 345 D-YGHHPREIAATLRAVRDGWP---GRRVLVVFQPHRYSRTRDLFE-DFARVLSEADALL 399 Query: 401 ISHVWLSG 408 ++ V+ +G Sbjct: 400 VTEVYAAG 407 >gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] Length = 505 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 153/364 (42%), Gaps = 30/364 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + + F AI +I A+ +GA V+V+ + L VF + ++ Sbjct: 41 DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAAEGV-ELDKQVFAIANLH 99 Query: 93 GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY------- 143 + ++A A + ++I ITG+ GKT+T +LT A + T A IG+ Sbjct: 100 EVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTLGAGITGE 159 Query: 144 ---NNHIGVPLTLARMPVDVDF---GIFELGM---SHLGEIRFLTHLVRPHIAVITTIAP 194 N + P A DF G+ + M SH E R + V +I T Sbjct: 160 RRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDG-VAFNIVAFTNFTR 218 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGK 252 HL +EE A+ KA+IF L T LN DD+ E + G++ I S G Sbjct: 219 DHLDYHGTMEEYAAQKAKIFT-LPGVTTALLNLDDAAAENHFHNTLPEGMRGIGMTSRGH 277 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ A + + +E ++ ++G+S VV IG N+L ++ + Sbjct: 278 SE-ASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQGIEPQA 336 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 +AL+ P GR R R ++ ++D + P +++ A++ L + G R + Sbjct: 337 IAEALAPLEPVLGRMTRIREN-DKLPLVVVDAGH--TPDAVRQAVTALRE---SGHTRIV 390 Query: 373 AVLG 376 V G Sbjct: 391 TVFG 394 >gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC BAA-430] gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC BAA-430] Length = 486 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 17/120 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---------PLTLARM 156 S TIIA+TGS GKT+ K L+ L K ++ S N G+ PLT Sbjct: 161 SNLTIIAVTGSYGKTSLKNYLSQILQESFKVHSTPRSVNTLTGIIADINQNLSPLT---- 216 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D I E G G+I+ + L+ P I V+ I AH+ F IE I K EI E Sbjct: 217 ----DIYIVEAGARGSGDIKEIVELIAPQIVVVGKIGEAHIEYFKNIENIYRTKYEILES 272 >gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae Cit 7] Length = 487 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F AI G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLADLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDTFGRELTGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP23-BS72] gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP23-BS72] Length = 450 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 28/230 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------- 80 N +++DSR+I + F A+ G DG FI + GA V+V+TD G Sbjct: 21 NDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDLGAAAVLVHTDDADQHGKVLHSDNA 80 Query: 81 ---LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIK 134 + I F + + A+ +S T +I ITG+ GKT+T +++ ++S+ Sbjct: 81 EHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLG 140 Query: 135 KTYACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTH 180 + A +G+ N + +TL R D + + + +S G ++ Sbjct: 141 RKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVD 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 V +AV T + HL +E A+AK +F G LN DD+ Sbjct: 201 AVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249 >gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 55/382 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181 NN + V P TL R + D+ + E+ H+ ++ Sbjct: 145 --NNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 201 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLNYDDSFFEL 234 IAV T + HL E K +F L EK + LN DD E Sbjct: 202 ---KIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLSTTEKKIAV-LNADDPSVEY 257 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K + A + ++G AD Q + + V +E+ + +G Sbjct: 258 FKKITSA----EVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEISLNLVGRFNVY 313 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 314 NALAAITVAIVEGIPLTNICDSLSNLKCIEGRME--IIDENQDFLVIVD--YAHTPDALE 369 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 370 ---NVLSTISEFSKGKVITVFG 388 >gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 509 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSRSI + FFA G DG FI A+++GA VV D + G+ P+ V Sbjct: 21 LSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAADFPLLAVT 80 Query: 90 DVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + ++A ++ A + +AITG+ GKT+ + L ALS + A IG+ Sbjct: 81 GLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGT 135 >gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS455] gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP-BS293] gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP14-BS292] gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS397] gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS457] gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS458] gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae INV200] gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS455] gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP14-BS292] gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP-BS293] gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS458] gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS457] gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae BS397] Length = 450 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 493 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 48/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-------TDMVASIG 79 + G+++DSR + F A+ G G +FI +A++ GA ++ + D +A+ Sbjct: 23 IAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTDAEGARIAADELAASD 82 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM----------LTIA 129 + + V L L A+ R T++A+TG+ GKT+ + + Sbjct: 83 AALVVVQDPRQTLAYTAALWFGAQPR---TMVAVTGTNGKTSISTFVRQIWTELGHMAVN 139 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFL--THLVR 183 L + A + P+TL R + + G+ M SH E R L HL Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGLEQRRLDGVHLT- 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHAL 242 A + HL + E +AKA +F+ L + GT +N DD ++ + A Sbjct: 199 --AAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGAAIRDIAQAR 256 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G +T+ + G S +AD L + + + +GK+ + + IG A+N+L+ G+ Sbjct: 257 G-QTVLTVG-SGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAENVLLACGL 314 Query: 303 VSILTADVDTAIKALSVF----HPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAI 357 V I + D +A VF H RG+ A + G +D ++ + A Sbjct: 315 V-IASGD-----EAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPD-----AVA 363 Query: 358 SVLSQISPHGEGRRIAVLG 376 + L + PH GR IA++G Sbjct: 364 TALQALRPHVMGRLIAIVG 382 >gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 487 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 96/443 (21%), Positives = 173/443 (39%), Gaps = 54/443 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ VA R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--VAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWPNLNCRVINLDDDFGRELAGLKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T + + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDGAAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 PH +GR + + G C G+ + +AEV+ VW++ D PR Sbjct: 362 PHAKGRLLCLFG--CG-GDRDRGKRPLMAEVVERL-ADGVWVT--------DDNPR---- 405 Query: 425 HYSETMDGLFLFIQSSLVDGDVV 447 SE +F I+ V D V Sbjct: 406 --SEAPTNIFDDIRPGFVAADKV 426 >gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O11] gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O46] Length = 494 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLT---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++S+G + A F + ++ LQG S + V Y + + Sbjct: 250 TVTPYEVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILTA---------DVDTAIKALSVFHPKEGR 326 I +I+ A ++T IKA+ P EGR Sbjct: 301 NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGR 335 >gi|307747707|gb|ADN90977.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni M1] Length = 475 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRTNENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] Length = 488 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 34/256 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ VA IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSETELSSEHLTVAFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRSAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E A+AK +F L+ T +N DD H + + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEI-------GHQWLTELPDA 253 Query: 250 FGKSKNADFQ--LRKW 263 S NADF+ L +W Sbjct: 254 IAVSMNADFKVGLHQW 269 >gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. AS9601] gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. AS9601] Length = 511 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 153/392 (39%), Gaps = 40/392 (10%) Query: 19 IGIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG F + A++ GA ++ Sbjct: 13 VGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS+ + ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173 L + K A G+ +N G A + + +F I E+ + Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230 + R A+ T + HL +E K ++F EK G LN+DD Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGICVLNHDDH 250 Query: 231 FFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287 + L + K +L + T + + +N DF K+ +E S + +++ Sbjct: 251 WISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFVPL 310 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDE 344 +G N + + I+ L + K + F GR ++ + N + T+I + Sbjct: 311 VGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRSLPTVIVD 370 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +K VL I EG+ I V G Sbjct: 371 -YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398 >gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] Length = 504 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 27/214 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----- 81 V G+ DSR + + F A+KG DG+ FI A+++GA ++ TD + +L Sbjct: 23 VRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAII--TDSAETFAALRERQP 80 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V V+ AL +++ A R + T+ A+TG+ GKTTT +L L S+ + Sbjct: 81 ELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTTAFLLEQMLRSVGRKSVL 140 Query: 140 IGSYNNHIG---------VPLT---LARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184 +G+ HIG P + LA V G E+ M SH E + L P Sbjct: 141 MGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVMEMSSHALEQERVWGL--P 198 Query: 185 -HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 +A+ T + HL +E AKA IF G+ Sbjct: 199 VDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGV 232 >gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] Length = 505 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83 ++G++ S+ + P FFA+ G +DGHDFI A+Q G+ ++V + DM ++ + + Sbjct: 28 ISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRDMDFYSPNVTYIKV 87 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL------------- 130 F + + + + + K +I +TG+ GK++ + + L Sbjct: 88 DDFSIRKFMSNFSNVFYDEPSK-KLKVIGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTV 146 Query: 131 -------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTH 180 S IK Y + I L+ + V + I E SH L R + Sbjct: 147 FFDDGSGSLIKNPYRQSTPESTEIHAFLS-NMVKNGVQYAILE-STSHGLDLKTARLID- 203 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239 V AV T I HL I+ + K +F + + G +N DD + K Sbjct: 204 -VNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSEFK--- 259 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +A+ YS KS ADF + + + + E +G + +G +N++ Sbjct: 260 NAVKKSFTYSL-KSSQADFFVSFIDEKIDSTRFEFYYKGVKYFANVNLLGSFNVENVMAA 318 Query: 300 LGIVS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +VS IL +D+ + L +GR L Q F +ID Y P + Sbjct: 319 LILVSQILNSDIQDIVDKLVCIKSLDGRMD--SINLGQNFSVIID--YAHTPGAFSKLFP 374 Query: 359 VLSQISPHGEGRRIAVLGDMCE 380 + + + + R I+V G E Sbjct: 375 IFKRFATN---RLISVFGSAGE 393 >gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus peroris ATCC 700780] gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus peroris ATCC 700780] Length = 450 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGQVLTAAGQN----GLLSGNIGYPASHVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P H+ E +AK I + + Sbjct: 162 DTLVMELSSFQLMGIESF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQKNMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277 + LN++ + L K+ A ++ F + D +++E L + Sbjct: 218 DYLVLNFNQDLAKELAEKTQA----SVVPFSTLEKVD-----------GAYLENGLLYFR 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M G+ G H +N L T+ + I D +T + LS F Sbjct: 263 GEAVMAADEIGVPGSHNVENALATIAVAKIRGVDNETIKETLSAF 307 >gi|237742552|ref|ZP_04573033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 4_1_13] gi|229430200|gb|EEO40412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 4_1_13] Length = 454 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 174/426 (40%), Gaps = 60/426 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H DG +F + K G+ N V + I + +D++ Sbjct: 54 DKKAMRSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 100 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + +++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 101 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNHAGYRAAYAGNIGRSLS 153 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P+I++I + P H+ ++ +E K Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 209 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270 I + + N DD E ++ + K I S K K AD ++ K C E S Sbjct: 210 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENS 265 Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++V +L K G H +N L + IL D + + L + P E R + Sbjct: 266 IIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTEL 316 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N G I++S N S K AI I + G + +L+ Sbjct: 317 F---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP--- 362 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 LAE++ NI V+L G ++ L + + Y + + +++SL D Sbjct: 363 --LAEMIK-KNIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRFT 416 Query: 450 KSSNSC 455 K SN Sbjct: 417 KESNEV 422 >gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 494 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 153/381 (40%), Gaps = 53/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR+I + F AI G DG FI AV +GA VV GS+ + Sbjct: 27 VEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGSVEWLDA 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV V ++ L++LA +I +TG+ GKTT +++ L + + A +G+ Sbjct: 87 VPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 143 YNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N I + TL+ + D + + +S LG ++ + + Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAED-NAVYTAMEISSLGLVQGRVKALDFEVG 205 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKT 246 V T ++ HL +EE A AK +F K +N DD + S+A+ + Sbjct: 206 VFTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEVGKAWMVDLSNAVAVSL 264 Query: 247 IYSFGKSKNADFQLRKW-----------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + G +Q W K + SW + QL S+ + IG A N Sbjct: 265 LPLSG------YQQSVWTSDVAYAETGIKLAFDGSWGQGQL---SVPL----IGQFNASN 311 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L+ + L D T I P GR + ++ N+ + Y P +++ Sbjct: 312 VLVAFATLLSLGIDKQTLIDTAPQLQPVIGRMELFQVP-NKAKVVV---DYAHTPDALEK 367 Query: 356 AISVLSQISPHGEGRRIAVLG 376 A++ L H G+ A+ G Sbjct: 368 ALAAL---RVHCSGKLWAIFG 385 >gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B] gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B] Length = 470 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 35/304 (11%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156 LA RLR T IA+ G+ GKTTT +L TI + IG N G L + Sbjct: 111 LAELMRLR---TGIAVAGTHGKTTTTSLLATIFTEAGLDPTVIIGGRLNAYGAGARLGQ- 166 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 G + + + + FL + P +V+T + HL +++GIE I A E G Sbjct: 167 ------GEYLIAEADESDGSFLC--LAPIASVVTNVDADHLDHYAGIEAIDDAFVEFLNG 218 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + DD L + + + ++G + A + R + ++ ++ V L Sbjct: 219 IPFYGVNVVCLDDPGVARLLPRIN----RPFVTYGFGEKARLRGRILETGAKSRFL-VSL 273 Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRCAL 334 G+ + E+ + G H QN L +G VS+ T I +AL+ F G G+R+ Sbjct: 274 DGEDLGEMRLNHPGRHNVQNALGAIG-VSLETGIAPAVIAEALAKFG---GVGRRFEIKG 329 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGEL 384 + ++D+ Y +PA ++A ++ + PH R A+ GD C E Sbjct: 330 ERAGVVVVDD-YGHHPAEIRATLATARAVYPDRRLVVAFQPHRFSRTKALFGDFCTCFEA 388 Query: 385 SQSF 388 + + Sbjct: 389 ADTL 392 >gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 486 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 107/423 (25%), Positives = 181/423 (42%), Gaps = 69/423 (16%) Query: 11 LQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 L+ + H IGI +G + I+ DSR + P FFAI G DG+ FI A++KGA Sbjct: 3 LKKLLNH-IGISYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKGAVA 61 Query: 68 VVVNTDMVASIGS--LSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+ + V + S +P V D+ AL K +I +TG+ GKTTT Sbjct: 62 VISDNAEVVKLYSKKYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKTTTS 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVD--VDFGIF 165 ++ L+ + A IG+ G P L R +D ++F + Sbjct: 122 YIIYNVLNKLGHKTAIIGTV--EYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEFVVS 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH E+ +T ++ A+ T + HL I +K ++F L K+ ++ + Sbjct: 180 EVS-SHGLELHRVTG-IKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF-FLTKSISV-I 235 Query: 226 NYDDSFFELLKAKSHALGIKTIY-----SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 N DD F ++L G++ I+ ++G KN ++ + S + ++L+ K Sbjct: 236 NIDDPFGKVLS------GLRAIFPCELITYG--KNGKVKIENVENKKFGSEITLRLENKR 287 Query: 281 MEVVHHGIGYHMAQN------MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + + G + A N +L++LG + D+ +IK P G+ Sbjct: 288 YVIKTNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-----P----GRLEEVVE 338 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 N ID Y P +++ ++VLSQI +G+ I V G + + F +AE Sbjct: 339 N----VFID--YAHTPDALEKVLTVLSQIK---KGKLITVFGCGGDRDREKRPFMGKVAE 389 Query: 395 VLS 397 S Sbjct: 390 KFS 392 >gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 495 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 145/367 (39%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ AF IKG DGH++I A++ GA LVVV+ S + Sbjct: 33 ITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGARLVVVDEFFDTSKIEGKVDYI 92 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ +I +TG+ GKT+T M+ L + + IG+ Sbjct: 93 KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 152 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 153 NMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 211 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E +AK ++F G+ K + N DDS+ K + Sbjct: 212 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDSW-----GKRIIEMYPDCVT 263 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A + K ++ E+ GK E+ + G N L L + Sbjct: 264 YAKDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIE 323 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +DT K L GR + N+ F +ID Y P + ++++ + EG Sbjct: 324 LDTIKKGLEDLKAVPGRFEIVES--NERFTIVID--YAHTPDGL---LNLMKTVDDVAEG 376 Query: 370 RRIAVLG 376 R++ + G Sbjct: 377 RKVLLFG 383 >gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces himastatinicus ATCC 53653] Length = 538 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 24/243 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G+ + V GI+ DSR++ P + + A+ G G DF A GA V+ + D Sbjct: 30 GVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAAAVLTDPDGAERAA 89 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137 + +PV VD+ G + LA ++ I ITG+ GKTTT ++ L + + Sbjct: 90 ATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKTTTAYLVDGGLRAAAEKA 149 Query: 138 A-----CIGSYNNHIGVPLTLAR--MPVDVD----FGIFELGMSHLGEIRFLTH---LVR 183 A IG+ IG + P D F + H + +H L R Sbjct: 150 AGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERDVHSVVMEVSSHALVLGR 209 Query: 184 P-----HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237 +AV ++P H+ SG+E+ AKA++F + + G I NYDD + L Sbjct: 210 VDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGVI--NYDDEYGRRLIE 267 Query: 238 KSH 240 +S Sbjct: 268 ESE 270 >gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 485 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 109/440 (24%), Positives = 177/440 (40%), Gaps = 65/440 (14%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L AI + + + +V G+ DSR ++ F I+G DGH F AV GA V+ Sbjct: 6 LSAILQNEMDDIFDPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVIS 65 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKE 124 + L +P V D ++A + R+R I +TG+ GKTTT Sbjct: 66 EYPL-----DLDVPNVVVADTKQTAGEVASVFYDHPSHRMR----IYGVTGTNGKTTTA- 115 Query: 125 MLTIALSSIKKTYACIGS------YNNHIGVPLT----------LARMPVDVDFGI---- 164 LT L + A I S +N I T LA M VD G+ Sbjct: 116 TLTYDLLRLSGRRAGIVSTIGARFHNQTIETANTTPEAVVLHRILAEM---VDAGVTDCV 172 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--T 222 E+ L E R + H A T + HL ++E A AKA +FE +E T Sbjct: 173 LEVSSHALMEGRVAG--IHFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEA 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I LN +DS ++ A+ +YS AD Q+ W+ + + V+++ +E Sbjct: 231 IVLNAEDSASHVM-AEFAPTRRAIMYSTTVDVEADVQV-IWRDET----VLVRMKEFKLE 284 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V +G A N+ +G+VS + T + + +GR +R + + Sbjct: 285 VPVRFMGAFNAANLAAAIGLVSTSDMALRTIVSNVPGLTLPKGRLERLATEDAEIYI--- 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 Y P ++ +S L Q + R + V+ + G+ + D+ + S Y S Sbjct: 342 --DYAHTPDGLEKCLSTLQQ-----DDRALVVV--LSAAGDRDPTKRQDMGRIASRY--S 390 Query: 403 HVWLSGFHVLALKDALPRSI 422 + + H + ++D P+ I Sbjct: 391 NEVIVTVHDVRMED--PKQI 408 >gi|283957222|ref|ZP_06374684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] gi|283791294|gb|EFC30101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] Length = 475 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] Length = 452 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 22/250 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ A GA V+ + + + +P Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAVLTDPAGAERVAAAGLPAL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD + +LA + I ITG+ GKTTT ++ L ++ T IG+ Sbjct: 95 VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTVHST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + V H I V Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-TDAVAMEVSSHALVLGRVDGCVFDIGVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++P H+ S +E+ AKA++F E+ +N DD + L AK + + T YS Sbjct: 213 TNLSPEHMEFHSDMEDYFRAKAQLFT-PERGRLGVVNADDEYGRRL-AKEAGVPVVT-YS 269 Query: 250 FGKSKNADFQ 259 +AD++ Sbjct: 270 AEGHPDADWR 279 >gi|157415066|ref|YP_001482322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386030|gb|ABV52345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Campylobacter jejuni subsp. jejuni 81116] gi|315931213|gb|EFV10185.1| mur ligase middle domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 475 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Azotobacter vinelandii DJ] gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii DJ] Length = 487 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 44/383 (11%) Query: 21 IVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 ++PQ + +++DSR + P + F A+ G DG I A+ +GA V Sbjct: 8 LLPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAAVAYEAAGAP 67 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSS 132 S +P+ + + G L+ A+A R + + ++ +TG+ GKT+ ++L AL Sbjct: 68 SFADGGVPLVPIKGLAGQLS--AIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDL 125 Query: 133 IKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH----- 185 + + IG+ N L R P + G+ G R ++ V H Sbjct: 126 LGERCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAG-ARAVSMEVSSHALAQG 184 Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL 235 +A+ T ++ HL ++ +AKA +F GL LN DD F LL Sbjct: 185 RVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFAWPGLR---CRVLNLDDPFGRLL 241 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG-IGYHMA 293 +++A + YS +S++A R+ + EV QG+ + +H +G Sbjct: 242 AGEANASRL-IGYSL-ESRSAQVHCRRAHFDEQGVRAEVATPQGEGL--LHSPLLGRFNL 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L +G + L +D ++ + GR +R L G L+ Y P ++ Sbjct: 298 SNLLAVVGALLGLDYALDEILRVVPQLQAPAGRMQR----LGGGAKPLVVVDYAHTPDAL 353 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 + VL + PH GR + + G Sbjct: 354 E---KVLEALRPHVRGRLLCLFG 373 >gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] Length = 531 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 112/256 (43%), Gaps = 32/256 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ S +A E F A+KG DGH +I A+++GA +VV+ + + G + + Sbjct: 32 VQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERGAAVVVLEDAVEPTPGVVCVQ-- 89 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +A A T++ ITG+ GKTTT +L + IG+ N Sbjct: 90 -VPDTRLALAHMAAAFYDHPSCNLTVVGITGTNGKTTTSYLLEAIWQASGAQVGVIGTVN 148 Query: 145 NHIG-----VPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 G P+T LA M VD I E+ SH +++ + VR + Sbjct: 149 CRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEVS-SHALDLKRV-QAVRFAAGL 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT----IFLNYDDSFFELLKAKSHALG 243 T ++ HL +E + K+ +F E L G +N DD + + L ++ Sbjct: 207 FTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQLAVINRDDPWGQKLLPQTS--- 263 Query: 244 IKTIYSFGKSKNADFQ 259 + ++G + AD + Sbjct: 264 -PPVLTYGFAAGADIR 278 >gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis SK150] Length = 459 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 115 AYLISEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSK 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IA IT + P HL +EE A+AK I + + Sbjct: 171 DTLVMELSSFQLMGIEDF----HPQIAAITNLMPTHLDYHGSVEEYAAAKWNIQKNMTAD 226 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + + + +++ A + F ++ D ++++ + + Sbjct: 227 DYLVLNFNQDWAKEMASQTQA----AVVPFSTTEKVD-----------GAYLDGDVLTFR 271 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M+ G+ G H +N L T+ + + D T + LS F Sbjct: 272 GEAIMQAAEIGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAF 316 >gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella pealeana ATCC 700345] gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC 700345] Length = 488 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 22/220 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83 I++DSR++ F AI G DG FI A ++GA +V+TD V + G L I Sbjct: 22 ITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQI 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F ++ + AL A +S+ I+ +TG+ GKT+ +++ K A +G+ Sbjct: 82 LFFQLNRQISALAAQAYPLS-QSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGTL 140 Query: 144 NNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAVI 189 N + P+TL + V+ + +S G ++ V +AV Sbjct: 141 GNGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 T ++ HL +EE AK +F+ G + +N DD Sbjct: 201 TNLSRDHLDFHHTMEEYGIAKKRLFQFANLRGGL-INIDD 239 >gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK597] gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mitis SK597] Length = 450 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] Length = 810 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 28/278 (10%) Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYN 144 V L L++ + A L + T I ++GS GKTT ++T + KK +YA IG N Sbjct: 83 AVRKQLPMLHRSELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYA-IGGLN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-I 203 + L+L ++ I E S +L P +AV+T + HLSNF G Sbjct: 142 S-----LSLNGYSGSSEYFIAEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSK 191 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E++AS E +E F N D + LK + S+G S++ ++ + Sbjct: 192 EKLASTIEEFTRKVENPRLCFYNGD---CQELKGRISGT------SYGFSQDCHLRIYSY 242 Query: 264 KQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 Q +S + GK +++ + IG H N + +GI L D ++ +AL F Sbjct: 243 SQNGWRSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFAG 302 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + R +R + FF E Y +P+ + + L Sbjct: 303 IQRRMERKNISEKFLFF----EDYAHHPSEISCTLRGL 336 >gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 513 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/363 (23%), Positives = 144/363 (39%), Gaps = 37/363 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + F AIKG DG+++I A+Q+GA +++ + ++G + Sbjct: 27 VQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGA-VIIYTEHRITALGVMIKICS 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 L L A K +I ITG+ GKTTT ++ AL + IG+ + Sbjct: 86 NARKTLADLCN-AFYDHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGTLDIK 144 Query: 147 IG--VPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 I T P D + E+ L R H ++ IA+ T Sbjct: 145 INNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSER--VHGIKFDIAIHT 202 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAK------SHALG 243 I HL+ + + +K ++F+ L LN DD+ ELL ++ L Sbjct: 203 NIERDHLNYHKNMGDYIRSKKKLFDCLSPGKVALLNLDDNHSLELLTGNNGLIVVTYGLN 262 Query: 244 IK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ T S N F + + + +EV+ + + +G H N L + Sbjct: 263 VRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSI--NLLGKHNIYNSLAAI 320 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +L + K + F G +R +G +T+ID+ ++ NPAS A + Sbjct: 321 TCCLLLDLSCEEIAKNIKSF---TGVTRRLEVIYKKG-YTVIDD-FSHNPASYGAVFESM 375 Query: 361 SQI 363 + Sbjct: 376 QNL 378 >gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 486 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 96/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G ++DSR + F A G +G DFI A+ GA +V + + + Sbjct: 26 VLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76 Query: 87 GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G ++ +LA +AAR + + A+TG+ GKT+ E+ A IG Sbjct: 77 GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMIAGHKAASIG 136 Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 SY+ + P LAR D+ IFE L + R + + Sbjct: 137 TLGVITAENSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 T+ + HL +E +AK +F E + GT + DD + + A Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTVIAHVQKR 252 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I G+ A +L + S+ + + +QG+S ++ IG + N L+ G+ Sbjct: 253 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGL 310 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V D+ + AL++ P GR +R + N G +D Y P ++AAI L Sbjct: 311 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 365 Query: 363 ISPHGEGRRIAVLG 376 PH EGR V G Sbjct: 366 -RPHTEGRLWVVFG 378 >gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] Length = 489 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 147/376 (39%), Gaps = 41/376 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F A+ G DG FI AVQ GA V+ D + P+ Sbjct: 23 ISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWPTDVPACPLV 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--ALSSIKK----TYACI 140 + AL +A ++AITG+ GKT+T + + AL K T Sbjct: 83 LASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQGFKAAAIGTLGLT 142 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL---GMSHL-----------GEIRFLTHLVRPHI 186 G+ I P PV + G+ L G H+ G + L HL Sbjct: 143 GAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEASSHGLEQGRLDGL-HLA---A 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-----AKSHA 241 A T + HL IE +AK ++F+ L I D + L+ A Sbjct: 199 AGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQAICAIAARRN 258 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L ++ + G + +L + + ++ G++ V+ G A N+L+ + Sbjct: 259 LRLRLVGEHGTT----LRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNVLLAVA 314 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVL 360 + + A++ + L H K RG+ R L G +D ++ + A +L Sbjct: 315 LAAQDNAEITRILPLLP--HLKGVRGRLERATVLPNGACAYVDYAHTPD-----ALARLL 367 Query: 361 SQISPHGEGRRIAVLG 376 + + PH G+ I VLG Sbjct: 368 ASLRPHARGKLIVVLG 383 >gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter heparinus DSM 2366] gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM 2366] Length = 485 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 141/372 (37%), Gaps = 43/372 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + DSR + AFFAIKG DGH +I V GAG+V+ + A I + Sbjct: 23 VSALVFDSRQVIKDAAFFAIKGTLADGHTYIAATVSAGAGVVICEV-LPAEIAP-DVTYI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + AL ++A K + ITG+ GKTT +L ++ I + Sbjct: 81 QVANSAVALGRMAANFYGNPSEKLQLTGITGTNGKTTIATLLFKLFRALGYKVGLISTVE 140 Query: 145 NHIG-----------VPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI------ 186 NHI PL L + D VD G M +H V H Sbjct: 141 NHINDEVIPATHTTPDPLALNALLQDMVDAGCDYCFM------EVSSHAVVQHRIEGLSF 194 Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V + I HL ++ AK F+ L + N DD ++ + A Sbjct: 195 AGGVFSNITHDHLDFHKTFDQYIKAKKAFFDALPASAFALTNLDDKNGMVMLQNTRA--A 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K Y+ + ADF+ + E S+ + L +V +G A N+L G Sbjct: 253 KKTYAL--KQLADFKAK----VIENSFKGLHLDIDDADVFFKLVGSFNAYNLLAVYGTAV 306 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L + + LS EGR + Q ++D Y P +++ +S + I Sbjct: 307 LLGQEKLDVLTLLSNLTGAEGRFDYITSS--QHIIGIVD--YAHTPDAVQNVLSTIQDIR 362 Query: 365 PHGEGRRIAVLG 376 G + I ++G Sbjct: 363 -KGTEQVITIIG 373 >gi|139437196|ref|ZP_01771356.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC 25986] gi|133776843|gb|EBA40663.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC 25986] Length = 472 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/301 (23%), Positives = 120/301 (39%), Gaps = 63/301 (20%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF---GIF 165 T +A+ G+ GKTTT M L RM +D F GI Sbjct: 116 TTVAVAGTHGKTTTSSMCATMLD-----------------------RMGLDPSFLIGGIV 152 Query: 166 E--------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 E + + + FL + P++ ++T + HL ++SGIEEI + A Sbjct: 153 EGYDTNGKNGSGDYFVAEADESDSSFL--FLNPNVVIVTNVEADHLDHYSGIEEIEATFA 210 Query: 212 EIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 + + + GT+ + +D EL K+ + + S+G +++ D QS Sbjct: 211 KFMSLVGEDGTVIVCGEDPHLVELAKSTG-----RHVLSYGFAESNDIVCMHPDVKGIQS 265 Query: 271 WMEVQLQGKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 V+ + + V G H N L + +L D+D+A KALS F EG + Sbjct: 266 DFIVRFEDGTEHAVEIKSNPGRHNMLNATAVLTVAHVLGFDIDSAAKALSSF---EGVRR 322 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMC 379 R+ + T++D+ Y +P +KA ++ S + PH R A+ D Sbjct: 323 RFTHVGDIDGITVVDD-YGHHPTEIKATLAAASSLGYKHVDVVFQPHRYSRLQALCDDFA 381 Query: 380 E 380 + Sbjct: 382 D 382 >gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL J1-023] Length = 491 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 152/394 (38%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ GA Sbjct: 3 LKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----- 223 L + R + +AV ++ HL +EE A AK+ +F L + + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 224 -FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD ++ + A + +FG + ADF + S S +++ Sbjct: 236 AVLNADDKESVRMQTATAA----HVITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFS 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L V AI + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAG--QDFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y+ P S+ ++VL I E R V+G Sbjct: 350 D--YSHTPDSL---LNVLQTIDEFAEKRVFVVVG 378 >gi|86152106|ref|ZP_01070318.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315124318|ref|YP_004066322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840891|gb|EAQ58141.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315018040|gb|ADT66133.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 475 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 391 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 13 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 67 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 68 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 127 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 128 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 185 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 243 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 244 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 299 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 300 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 352 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS I +G+ I V G Sbjct: 353 NVLSTIREFAKGKIITVFG 371 >gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus infantis ATCC 700779] gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus infantis ATCC 700779] Length = 450 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGYPASQVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I+ P IAVIT + P H+ E+ +AK I + Sbjct: 162 DTLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEDYVAAKWNIQSNMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277 + LN++ + L K++A + F + D +++E L + Sbjct: 218 DYLVLNFNQELAKELATKTNA----AVVPFSTLEKVD-----------GAYLEDGLLYFR 262 Query: 278 G-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G K M G+ G H +N L T+ + + D +T + LS F Sbjct: 263 GEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNETIKETLSAF 307 >gi|205356765|ref|ZP_03223524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345332|gb|EDZ31976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 475 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 202 TNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes Finland 1988] gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165] gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes J0161] gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900] gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165] gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900] gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] Length = 491 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL +EE A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A I +FG + ADFQ K S S ++ + Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AIK + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378 >gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 505 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 34/252 (13%) Query: 22 VPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 +PQ VN I++DSR +A F A+KG DG FI A+Q GA ++ D +A Sbjct: 23 LPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFIDTAIQAGAVAIIAEADGIAQ 82 Query: 78 IGSLSIPVFGVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALS 131 G + + L LN+ A+A R + + A+TG+ GKTT ++L + Sbjct: 83 DGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALYAVTGTNGKTTISQLLAQWAN 142 Query: 132 SIKKTYACIGSYNN---------------HIGVPLTLARM-PVDVDFGIFELGMSHL--G 173 I +G+ N I + TLA + DF E+ L G Sbjct: 143 LIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGLVEQGADFAAMEVSSHGLVQG 202 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-F 232 +R L H ++ T ++ HL ++ A AK +F G +N DD+ Sbjct: 203 RVRDL-HF---KASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HDAGVPIINADDAVGA 257 Query: 233 ELLKAKSHALGI 244 E L HA+ + Sbjct: 258 EWLHDLPHAVAV 269 >gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 492 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 146/380 (38%), Gaps = 51/380 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ IDSR I F + G + D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L S +G Sbjct: 78 PKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGKTTTSYLLEKIFSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNF--- 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------EKTGTIFLNYDDSFFELLK 236 IAV T + HL +E K +F L EK + LN DD E K Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLSTTEKKIAV-LNADDPSVEYFK 252 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + A + ++G AD Q + + V +EV + +G N Sbjct: 253 KITSA----EVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + + + + S EGR + NQ F ++D Y P +++ Sbjct: 309 LAAITVAMVEGIPLTNICDSFSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE-- 362 Query: 357 ISVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 363 -NVLSTISEFSKGKVITVFG 381 >gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG 19424] gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 474 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 113/433 (26%), Positives = 171/433 (39%), Gaps = 61/433 (14%) Query: 53 GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 GHD A GA VVV+T + V + S IPV +L L +L Sbjct: 56 GHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVVPRAVMLAELMRLKQG----- 107 Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 +AI G+ GKTTT ++ +A + T+ IG N G L G Sbjct: 108 ----VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GD 155 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 F + + + FL P I VIT I H+ + + A E + L G Sbjct: 156 FIVAEADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIA 213 Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS 280 L DD + E+L S K + +G +++A + + Q V QL G + Sbjct: 214 VLCVDDPNVREILPFVS-----KPVVRYGFAEDAQIRAVDARAVDGQMHFTVLRQLNGHT 268 Query: 281 ---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCAL 334 +E+V + G H QN L + I + L +KAL FH R +RY Sbjct: 269 EPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPD 328 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 G FTL+D+ Y +P M A ++ P RR+ + F D + Sbjct: 329 GAGTFTLVDD-YGHHPVEMAATLAAARGAFPE---RRLVLAFQPHRFTRTRDCFE-DFVK 383 Query: 395 VLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443 VL + +S V+ +G + D AL R++ V + E M+ + I +++ Sbjct: 384 VLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNAVRP 443 Query: 444 GDVVVVKSSNSCG 456 GDVVV + S G Sbjct: 444 GDVVVTMGAGSIG 456 >gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] Length = 492 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 145/381 (38%), Gaps = 53/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ + Sbjct: 23 ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEM 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHL 181 NN + V P TL R + D+ + E+ H+ ++ Sbjct: 138 --NNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF- 194 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELL 235 IAV T + HL E K +F L LN DD E Sbjct: 195 ---KIAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDPSVEYF 251 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K + A + ++G AD Q + + V +EV + +G N Sbjct: 252 KKITSA----EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYN 307 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 308 ALAAITVAMVEGIPLTNICDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE- 362 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 363 --NVLSTISEFSKGKVITVFG 381 >gi|313895810|ref|ZP_07829364.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975235|gb|EFR40696.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 141 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G +T I+++YNA+PASM+AA+ +++ P GRRIAVLGDM E+G S H + Sbjct: 9 GAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGAASAEGHRSVGRTA 65 Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + V G + +A + ++ T + ++ L DGD V+ K S Sbjct: 66 AAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGS 122 >gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] Length = 483 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 45/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85 + ++IDSR I F A++G DGH FI A+++GA ++ T G I V Sbjct: 23 IAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIEQGASAILCETIPEQQKAGVTYIVV 82 Query: 86 FGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--- 139 +D G + + + RL+ ++ +TG+ GKTT +L K Y C Sbjct: 83 SSTEDAAGKVATIFYGNPSMRLK----LVGVTGTNGKTTVATLLYNMFR--KFGYKCGLL 136 Query: 140 --IGSYNNHIGVPLT------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + +Y VP L RM +F SH + ++ L H Sbjct: 137 STVCNYIEEEAVPADHTTPDPIALNQLLHRMAESGCEYVFMECSSHAIAQKRISGL---H 193 Query: 186 IA--VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + + T + HL + +AK F+ L K+ N DD + A Sbjct: 194 FSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSLPKSSFAITNADDKNGMYMVQNCKA-- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 TI ++ ADF+ + + E ++E+ EV IG N+L G Sbjct: 252 --TIKTYSLRNMADFKAKILECHFEGMYLEID----GREVGVQFIGKFNVSNLLAVYGTA 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + A+S GR + R +G ++D Y P ++ ++ + ++ Sbjct: 306 MMLGKQPEDILLAMSTLKSVSGRLEPIRS--QEGVTAVVD--YAHTPDALANVLNAIHEV 361 Query: 364 SPHGEGRRIAVLG 376 G+G+ I V G Sbjct: 362 L-DGKGKVITVCG 373 >gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] Length = 493 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 29/245 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------ 81 N +++DSR++ P + F AI G DG +I AVQ+GA +V+TD S G Sbjct: 20 NKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASLVHTDDPESHGKCVDDEGK 79 Query: 82 SIPVFGVDDVLGALNKLAV---AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I F ++ L AL A A RL+ ++ +TG+ GKT+ +++ ++ + K A Sbjct: 80 QILFFQLNRQLSALAAQAYPLSAERLK----LVGVTGTNGKTSITQLMAQLVTLLGKQSA 135 Query: 139 CIGSYNNHI-----------GVPLTLARMPVDVDFGIFEL---GMSHLGEIRFLTHLVRP 184 +G+ N + +T+ + D EL +S G I+ V Sbjct: 136 VMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVSSHGLIQGRVEAVPF 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV T ++ HL ++ AK +F + +N DD + A+ H G Sbjct: 196 DVAVFTNLSRDHLDYHGTMQAYGDAKKRLFN-FPSLSSGLINLDDEIGKQWLAE-HDTGK 253 Query: 245 KTIYS 249 T +S Sbjct: 254 YTSFS 258 >gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 501 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 42/387 (10%) Query: 16 GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 GH + P + + G+ DSR + P + + A+ G + G DF A +GA V + + Sbjct: 26 GHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEATARGA--VAMLS 83 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL 130 D + I +P VDD AL LA A + + +TG+ GKT+T +L AL Sbjct: 84 DRPSDI----VPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNGKTSTVYLLEAAL 139 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGM---SH-LGE 174 + +T G G R + V+ G+ + M SH L E Sbjct: 140 VAAGLRTGVVTGVTVRGPGTVRPATRTTPEACELQQSFVEFVEEGVDAVAMEVSSHGLAE 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFE 233 R R + V T +A HL +E +AKA +FE L + + + DD + Sbjct: 200 HRIDGS--RFDVGVFTNLARDHLDYHPDMEAYYAAKARLFERDLCERAAVCI--DDDYGR 255 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A+ + + + + AD + S + +G+ + V +G H Sbjct: 256 RLAAE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVRLRVLGGHQV 312 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N + L +S+ D+ A+ + GR + R + Q F L+D Y N A Sbjct: 313 DNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE--RVDVGQPFLALVD--YVHNTAGQ 368 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCE 380 L ++P GR + VLG E Sbjct: 369 HRLFPYLRSVTP---GRIVVVLGATGE 392 >gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] Length = 496 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 158/383 (41%), Gaps = 56/383 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +++DSR + F A+ G G +FI +A++ GAG V+ + A+ ++ V Sbjct: 26 VTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTD----AAGAKIAADVL 81 Query: 87 GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTT----TKEMLT-I 128 G GA L VA R T++A+TG+ GKT+ T+++ + Sbjct: 82 G-----GADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTRQIWQEL 136 Query: 129 ALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDFGIFELGMSH---------LGE 174 L ++ T G + + P+TL RM G E G++H L + Sbjct: 137 GLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLA----GAAESGVTHAAMEASSHGLSQ 192 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE 233 R V+ A T HL + E+ +AKA +F L + G +N DD Sbjct: 193 RRL--DGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGV 250 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + A + A G + + + G+ + AD L + + + + +G+ + IG A Sbjct: 251 DMVAIARARG-QEVLTVGR-EAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQA 308 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L+ G+V D D L + GR + + G +D Y P ++ Sbjct: 309 DNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGR-MQLAAMRDNGAAVFVD--YAHTPDAV 365 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 AI L PH GR +A++G Sbjct: 366 ATAIKAL---RPHVMGRLVAIVG 385 >gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes EGD-e] gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-561] gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e] Length = 491 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL +EE A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A I +FG + ADFQ K S S ++ + Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AIK + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378 >gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] Length = 495 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 45/265 (16%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GI DSR + P + F + G DGHD+ AV GA +VV ++ + +P Sbjct: 24 RGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAAALVVEREL-----DVPVPQLV 78 Query: 88 VDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEML--------------- 126 V D A+ LA + R+R +I ITG+ GKTT ++ Sbjct: 79 VKDARHAMAVLADYMFDSPSRRMR----MIGITGTNGKTTITYLIEKIMQDAGVNTGLIG 134 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPH 185 TI + ++Y G+ + + L M V + E+ L + R R Sbjct: 135 TIQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFR-- 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYDDSFFELLKA 237 A+ T + HL + +EE +AK +F L + LN DD L+A Sbjct: 193 TAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNSKYAVLNADDPASSYLQA 252 Query: 238 KSHALGIKTIYSFGKSKNADFQLRK 262 ++ A + ++G K++D Q + Sbjct: 253 QTAA----QVITYGVEKDSDVQASR 273 >gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] Length = 514 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 41/305 (13%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA---SIGSLSIPV 85 G++ DSR + + FFA+ G H+DG FI A+Q+G+ ++V D+ + ++ + I Sbjct: 39 GLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQGSNVIVHTNDIDSYDPNVTYIKIDA 98 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + + + + + K II +TG+ GK++ + L S+ I + Sbjct: 99 CNIKRFMSNFSHIFYDEPSK-KLKIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFF 157 Query: 146 HIG------------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHL-VRPH 185 G + L L++M +V++ I E SH + R + + Sbjct: 158 EDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVE-STSHGLDARTSRLIDISYS 216 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGI 244 +AV+T I+ HL ++ +AK +F + G +N DD+ F + I Sbjct: 217 VAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIVNMDDNNFSVFLN-----AI 271 Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +Y++ ++KNADF + K + Q+ E H + Y N+ + + Sbjct: 272 NRVYTYSLENKNADFFVSKINE---------QMGFIEFEFYHKDVKYDARVNLTGSFNVE 322 Query: 304 SILTA 308 +++ A Sbjct: 323 NVMAA 327 >gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] Length = 493 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 25/224 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++ + +DSR I F AIKG DG FI A+ +GA V+ + G S Sbjct: 27 ISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIAQSCERHPQGVCSTESR 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV +D + L+ LA ++ +TG+ GKTT +++ L+ + K A +G+ Sbjct: 87 VPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQIIAQWLNLVGKRAAVLGT 146 Query: 143 YN-----------NHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186 N G + + + V + DF E+ L + R T P Sbjct: 147 AGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSHGLVQGRVKT---LPFA 203 Query: 187 A-VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A V T ++ HL +EE AK +F + G +N DD Sbjct: 204 AGVFTNLSRDHLDYHGTMEEYELAKRSLFTE-HQCGKAIINVDD 246 >gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 486 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 506 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 117/299 (39%), Gaps = 37/299 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR I P E F A+ G H G D+I A+ KGA VV AS L P Sbjct: 33 VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAP----ASARDLVAPAVEKR 88 Query: 90 DVLGALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + + AVA L ++A ++ ITG+ GKTTT ++ L++ + Sbjct: 89 ALAVYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVL 148 Query: 141 GSYNNH-----IGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N + PLT L M DVD + E+ L + R + Sbjct: 149 GTVNYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAG--LDF 206 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKS---- 239 AV+T + HL +E AK +F + G +N++D + L + Sbjct: 207 DAAVLTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGI 266 Query: 240 -HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +G ++ + Q R + +E +GKS V IG A N+L Sbjct: 267 GYGIGDSSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLL 325 >gi|57167794|ref|ZP_00366934.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli RM2228] gi|57020916|gb|EAL57580.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter coli RM2228] Length = 475 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 50/316 (15%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +S+ +F + L NK + + II IT S GKT+ K L L KTY Sbjct: 128 ISLKIFELFSNLYFKNKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTP 187 Query: 141 GSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 S N +G+ + + D I E G G+I +T + P I ++ I AHL Sbjct: 188 RSVNTLLGIIADINTNLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEY 247 Query: 200 FSGIEEIASAKAEIFEG--LEK----TGT------IFLNYDDSFFELLKAKSHALGIKTI 247 F IE K E LEK T T + L YDD +L +S G++ Sbjct: 248 FKNIENTRKTKLEALNSKRLEKAFLHTSTQKSEDELILLYDD---KLQDIQSSLQGLE-- 302 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ L+ K+ E +G AQN+ + + L Sbjct: 303 ------------------------FKINLENKTYEFKSQILGDFNAQNLCACILCANYLG 338 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ K + + E R + +++ +ID+S+N N M A+ ++ + Sbjct: 339 VKIEKIQKQVLKINSVEHRLQ----IISKEPKFIIDDSFNGNYKGMSAS----YKLCKNY 390 Query: 368 EGRRIAVLGDMCEMGE 383 +GR++ V + E+ + Sbjct: 391 KGRKVLVSPGIVEVDK 406 >gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 785 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 54/322 (16%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV+T + V + L IP L++ + A L ++ IA+ GS Sbjct: 70 RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175 GKTTT M+ + L + +GV T+ V + +LG + LG Sbjct: 121 HGKTTTTSMIGVTL--------------DRVGVSPTII-----VGGEVPDLGTNAKLGTS 161 Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 R+L +RPHIAV+T + H+ ++ +E+I +A + E ++ GT L Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGTAVL 221 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 +++ E+L+ + K + S+ AD++ + V +G M V Sbjct: 222 CFEN---EILRNIARETAHKVV-SYAIDHEADYRASNIETRGSVISFSVHERGTEMGRVL 277 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 I G H N L + + + + AL+ FH G +R++ + ++D+ Sbjct: 278 LNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFH---GAKRRFQTKGKERGVWVVDD 334 Query: 345 SYNANPASMKAAISVLSQISPH 366 Y +P + ++ Q +P Sbjct: 335 -YAHHPTEIAVTLAAARQTNPE 355 >gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis str. Sterne] gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 401 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 253 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 254 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 310 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS I +G+ I V G Sbjct: 363 NVLSTIREFAKGKIITVFG 381 >gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6] gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6] Length = 450 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELARKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIVVAKLRGVDNQTIKETLSAF 307 >gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 485 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 150/366 (40%), Gaps = 38/366 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 22 DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYIL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136 Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG V + P +D IF+ + +I ++ V H A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVIMEVSSHSLEIGRVEVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK ++F L+ +N DD + + L + I S Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRL-YDEFIVDNPEIIS 253 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G +N D + S+ +++V+ + + +V +G N L +GI + Sbjct: 254 YG-IENGDLE----GDYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALKIGIS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +K +S GR + C Q + ++D Y P ++ I I G Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK---NG 361 Query: 370 RRIAVL 375 RI + Sbjct: 362 SRIITI 367 >gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis N1568] Length = 469 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++VIT I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum H04402 065] Length = 483 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 144/370 (38%), Gaps = 36/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSYYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186 N+IG P + L ++ D VD+ + E+ L +L + V Sbjct: 142 NYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++ T + HL E ++K +F+ + + +N DDS+ E K ALG K Sbjct: 198 SIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKI 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y G KN D + S + + + + + G + N L ++G + Sbjct: 253 TY--GLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIPGKYNIYNALGSIGACLLE 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + T +AL GR + N G+ ++D Y P ++ ++L+ Sbjct: 311 GIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVD--YAHTPDGLE---NILNTAREF 365 Query: 367 GEGRRIAVLG 376 +GR I+V G Sbjct: 366 TKGRLISVYG 375 >gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus RS-1] gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus RS-1] Length = 457 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 33/294 (11%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156 LA RLR T IA+ G+ GKTTT +L TI + IG N G L + Sbjct: 98 LAELMRLR---TGIAVAGTHGKTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARLGQ- 153 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 G + + + + FL + P +V+T + HL ++ GIE I A + Sbjct: 154 ------GEYLIAEADESDGSFLC--LSPIASVVTNVDADHLDHYDGIEAIDDAFVDFLNN 205 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + DD + + + + I ++G S A + R + S EV L Sbjct: 206 IPFYGVNVVCLDDPGVARILPRVN----RPILTYGFSDKARLRGRIIDSGA-MSCFEVSL 260 Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 GK + E+ + G H N L +G+ + + T +AL+ F G G+R+ Sbjct: 261 DGKRLGEMRLNHPGRHNVLNALGAIGVSLEVGIPLGTIAEALAKF---AGVGRRFERKGE 317 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMC 379 + ++D+ Y +PA +KA ++ + PH R A+ GD C Sbjct: 318 KDGVVVVDD-YGHHPAEIKATLATARAVYPERRLVVAFQPHRFSRTKALFGDFC 370 >gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA2] Length = 499 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188 + G L AR P D G+F M+ G + + +A+ Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194 Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280 >gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] Length = 484 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 125/321 (38%), Gaps = 36/321 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I DSR + P F A++G DGH++I A++ GA +V +IG ++ + Sbjct: 24 ISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAVAIVCEDLPAHTIGEVAFMM- 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++A K ++ +TG+ GKTT +L + + + Sbjct: 83 -VADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKTTVATLLYQLFHDLGYKCGLLSTVE 141 Query: 145 NHIG---VPLTLARMPVDVDFGIFELGMSHLG-EIRFL---THLVRPHI--------AVI 189 N I +P T P V M + G + F+ +H V H + Sbjct: 142 NQINGKVIPATHT-TPDQVVLNSLLNDMVNQGCDYCFMEVSSHAVAQHRIEGLQFSGGIF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245 T + HL + AK F+ L K+ N DD + +A+ +K Sbjct: 201 TNLTHDHLDYHKTFDNYLKAKKAFFDALPKSAFALTNIDDRNGNIMLQNTRAQRKTYALK 260 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ AD++ + E + + L + EV +G A N+L G + Sbjct: 261 SL--------ADYKAK----ILENQFGGLLLDIDNEEVWFKMVGSFNAYNLLAVYGAARL 308 Query: 306 LTADVDTAIKALSVFHPKEGR 326 L D + +LS EGR Sbjct: 309 LGQDKTKVLTSLSKLKGAEGR 329 >gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus watsonii C-113] gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus watsonii C-113] Length = 452 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 31/239 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDD 90 +DSR P A P D +L A L+ +V S G +LS P V Sbjct: 40 MDSREFPPGLAALQEHNP-----DVVLRLGGFDAALIAEAEQLVVSPGVALSEPAIQVAQ 94 Query: 91 -----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+G + A A KA +I ITGS GK+T +L + K G Sbjct: 95 ARGIPVIGDIELFASYA----KAPVIGITGSNGKSTVTSLLEMMARQAGKQVLAGG---- 146 Query: 146 HIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 ++G+P L L PV D I EL L E + + V A + I+P H+ + ++ Sbjct: 147 NLGLPALELLEKPVP-DLYILELSSFQL-ETTYTLNTV---AACVLNISPDHMDRYPDLD 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 AKA I+ G TGT+ +N DD F A+ H ++ ++ G N ++ LR++ Sbjct: 202 AYFQAKARIYRG---TGTMIINTDD-FRVASLAQPHRSCLR--FTLGNPNNNEYGLREY 254 >gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 256 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 25/217 (11%) Query: 23 PQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P G ++G+S DSR +AP AF A+ G DG FI+ A +GA + + + + A Sbjct: 41 PAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIVDAAGRGAAVAIASQPVDA---- 96 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA--LSSIK 134 SIPV V + L+ A R T++A+TG+ GKT+ T+++ A +++ Sbjct: 97 -SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHAGHAAAMI 155 Query: 135 KTYACIGSYNNHIGV-----PLTLARMPVDV-DFGIFELGM---SH-LGEIRFLTHLVRP 184 T + N G P++L ++ ++ D G+ M SH L + R V+ Sbjct: 156 GTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL--DGVKL 213 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 A T + H+ +E +AK +F+ L G Sbjct: 214 AAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLPKG 250 >gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL074PA1] gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA2] gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA1] gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA2] gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA1] gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA2] gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA1] gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA2] gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL007PA1] gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL056PA1] gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA3] gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA2] gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA1] gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA1] gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL045PA1] gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA2] gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA1] gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA2] gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA3] gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL078PA1] gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA2] gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA3] gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA1] gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL038PA1] gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA2] gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL097PA1] gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA3] gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA2] gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA2] gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA1] gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL020PA1] gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL099PA1] Length = 499 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188 + G L AR P D G+F M+ G + + +A+ Sbjct: 136 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194 Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280 >gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] Length = 492 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 96/397 (24%), Positives = 163/397 (41%), Gaps = 43/397 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +LL Q ++GI P +G++ DSR + P + F A G DG +I A+ + Sbjct: 1 MTTPRELLD--QLAAMGIQP----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALAR 54 Query: 64 GAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA V+ + +++ + ++PV + + G L AV ++IAITG+ GK Sbjct: 55 GAVAVLWQPSADFSWDSTLATANLPVAALRPLAGPLAH-AVYGHPSEGLSLIAITGTNGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVP-------------LTLARMPVDV---DFG 163 TT + + A K A IG+ G P TL R D + Sbjct: 114 TTISQCIAQAY---PKPCAIIGTLG--AGFPDSLIETGFTTPEATTLMRYLADFRARNAA 168 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 L S +G + R +A+ T HL +E A AK ++F + T Sbjct: 169 ACALEASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFH-WPRLRTA 227 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKS 280 +N DD F L ++ A+ + Y+ G+++ L + + + + + L Sbjct: 228 IINLDDEFGLNLMRETTAMRVLG-YAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGR 286 Query: 281 MEVVHHGIGYHMAQNMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + V +G + N+L ++ A D AI+ LS P GR +R L Sbjct: 287 VAVDTTLVGRYNISNLLAVAAVLHDAGLAAADVAIR-LSELTPPPGRMER----LGGNGE 341 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ Y P +++ A++ L ++ GR V G Sbjct: 342 PLVVVDYAHTPDALENALTALRDVATTRAGRLSVVFG 378 >gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] Length = 476 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L+ I S I + G+S +S+ I F AI+G +DGH +I +A++ GA +V Sbjct: 6 ILKEISYISKNIQNDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENGASTIV 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLT 127 D V I V+D AL K++ + SK+ +I +TG+ GKTTT +++ Sbjct: 66 YTNDDVEFKN--EINYIKVEDARLALAKISNFLSDFPSKSLRMIGVTGTNGKTTTANIVS 123 Query: 128 IALSSIKKTYACIGS 142 L+ + +T A IG+ Sbjct: 124 FLLNKLGETCANIGT 138 >gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] Length = 493 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 32/388 (8%) Query: 12 QAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 QA+ S+G+ +G N GIS+DSR + P F A+ G G +FI +A+ GA Sbjct: 4 QAVPLSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVA 63 Query: 68 VVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+ + + ++ + + D AL++ A T+IA+TG+ GKT+ Sbjct: 64 VLTDAEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVS 123 Query: 124 EM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDF-GIFELGM--- 169 + + L+++ T G++ + P+TL R + GI M Sbjct: 124 TFVRQIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEAS 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228 SH + R L V A T HL + AKA +F L + GT +N D Sbjct: 184 SHGLDQRRLDG-VTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINID 242 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + A + A G + I + G+ D L + + + +GK+ + + I Sbjct: 243 DPKGVDMVAIARARGCEVI-TVGRD-GGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLI 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L+ G+V AD L GR + + G +D ++ Sbjct: 301 GGFQADNVLLAAGLVIACGADPAHVFDTLPHLTTVRGR-MQLAATRDNGGAVFVDYAHTP 359 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 + A + L + PH GR +A++G Sbjct: 360 D-----AIATALQAMRPHVMGRLVAIVG 382 >gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [uncultured Desulfobacterium sp.] Length = 537 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 100/396 (25%), Positives = 158/396 (39%), Gaps = 50/396 (12%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 S+ + P F A+ G DGHDF+ A++KGA +VV V SI + V++ Sbjct: 60 SQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTVKD----SI-IIEVENTRK 114 Query: 94 ALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148 AL ++A K II ITG+ GKTTT ++ L + IG+ N Sbjct: 115 ALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGFKTGVIGTINCRYSGKT 174 Query: 149 --VPLT----------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 P+T L+ M +D V + E+ + R AV T + Sbjct: 175 FPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFRIEGCFFDS--AVFTNLTQD 232 Query: 196 HLSNFSGIEEIASAKAEIF-EGL------EKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 HL +E + K ++F E L EK T+ +N DD E KA S L K I Sbjct: 233 HLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTV-INCDD---ERGKALSGILSTKCIK 288 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS---I 305 + G D + + + + + +G H +N++ G+ S I Sbjct: 289 T-GSDSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIMSAAGVASGLGI 347 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + IK+LSV G+ + G +D Y P ++K +VL + P Sbjct: 348 SSEIIKKGIKSLSVIP-----GRLEKINNEAGISVYVD--YAHTPDALK---NVLLSLRP 397 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +GR I V G + + + +LA LS + + Sbjct: 398 IVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAV 433 >gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] Length = 493 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 145/382 (37%), Gaps = 55/382 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT ++ LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184 + +G P TL R + D+ + E+ L H+ R Sbjct: 138 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 190 Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFEL 234 IAV T + HL +E K+ +F L LN DD E Sbjct: 191 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTDKKIAVLNADDPSVEY 250 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K + A + ++G AD Q + + V +EV + +G Sbjct: 251 FKKITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVY 306 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 307 NALAAITVALVEGIPLTNISDSLSTLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE 362 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 +VLS IS +G+ I V G Sbjct: 363 ---NVLSTISEFSKGKVITVFG 381 >gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] Length = 488 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 40/265 (15%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ VA IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGLRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTKLPDAIAV---- 256 Query: 249 SFGKSKNADFQLRKWKQCSEQSWME 273 S NADF++ WM+ Sbjct: 257 ----SMNADFKV------GSHQWMK 271 >gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] Length = 486 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 89/375 (23%), Positives = 140/375 (37%), Gaps = 49/375 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR + F A++G DGH FI +QKGA VV ++ + + Sbjct: 23 VTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGATAVVCE-ELPEIESTADCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +A SK ++ +TG+ GKTTT +L + + + Sbjct: 82 QVKDSAEALGMIASNFYDSPSSKLKLVGVTGTNGKTTTVTLLYRLFRKLGYKTGLLSTVE 141 Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHL---VRPHIAV----------- 188 N I + A P + M G TH V H AV Sbjct: 142 NIIEDKVVQATHTTPDAISLNKLLADMVKAG----CTHCFMEVSSHAAVQRRIAGLQFAG 197 Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + I HL +E AK F+GL +N DD ++ + A KT Sbjct: 198 GLFSNITHDHLDYHKTFDEYIKAKKLFFDGLPNDSFALINSDDKRGRVMIQNTRA---KT 254 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGYHMAQNMLMTLG 301 Y++ ADF+ + + +QG M+V IG A N+L Sbjct: 255 -YTYSLLALADFKGK---------LISTTMQGLEMDVDGIQAWFRLIGNFNAYNLLAVYA 304 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L D + + LS G R+ ++ T+I + Y P ++K + ++ Sbjct: 305 TAVLLGEDKEEVLMQLSTIEAANG---RFEQQISATRITVIVD-YAHTPDALKNVLETIT 360 Query: 362 QISPHGEGRRIAVLG 376 ++ G + I V+G Sbjct: 361 EL--KGANKIITVVG 373 >gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-003] Length = 491 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL +EE A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A I +FG + ADFQ K S S ++ + Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AIK + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAEKRVFVVVG 378 >gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA1] gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA2] gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA1] gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL086PA1] gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA1] gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA2] gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA1] gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL092PA1] Length = 499 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188 + G L AR P D G+F M+ G + + +A+ Sbjct: 136 FRLDGEELPSARTTVTTPESPDLEGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 194 Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 195 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 253 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 280 >gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] Length = 483 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 27/248 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + AFFA+ G DG + A +GA +VV +S+P+ Sbjct: 20 IAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVVAP-----RAAEVSLPLV 74 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSY 143 V DV +L A R + A+TG+ GK++ + L IAL + IG Sbjct: 75 VVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQIWIALGREAASLGTIGLI 134 Query: 144 NN---HIGVPLTLARMPVDVDFGIFEL---GMSHLG--------EIRFLTHLVRPHIAVI 189 + H G T PV + + EL G++HL + R L VR + Sbjct: 135 DKSGAHYGALTTPG--PVALHQTLDELCAGGVTHLAMEASSLGIDQRRLDG-VRLCVGAF 191 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL + +EE +AK +F+ L +TG T ++ D + E + A A G+ ++ Sbjct: 192 TNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAERVAAVCAARGL-ALF 250 Query: 249 SFGKSKNA 256 G A Sbjct: 251 DVGAKGRA 258 >gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] Length = 494 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 90/382 (23%), Positives = 151/382 (39%), Gaps = 56/382 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GSLS 82 ++G+ DSR + +AF A+ G H +I A++ GA ++++ ++ G+L Sbjct: 24 IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESEQAGECSERSGALI 83 Query: 83 IPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 +PV + LG L A R + ++ +TG+ GKT+ + + L + Sbjct: 84 VPVPELKVRLGKL-----ADRFFEYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCG 138 Query: 139 CIGSYNNHIGVPLTLARMPVD-----------VDFGIFELG--------MSHL---GEIR 176 +G+ G+P TL P V GI G SH G I Sbjct: 139 VLGTLG--YGMPETL--QPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRID 194 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT AV T + HL + AKA++F E+ + +N DD F L Sbjct: 195 RLTLTA----AVFTNLTRDHLDYHGSMAAYGEAKAKLFS-REELRFVVINVDDPFGRKLY 249 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQ 294 + + +S + + A+ L+++ C+ + L G+ E +G A Sbjct: 250 HQLEGKCDRLRFSLHEPQ-AELWLKEF--CALDNGFRAVLDGRWGEFTIEAPLMGRFNAS 306 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L + V L DV + P GR + + G ++D Y P ++ Sbjct: 307 NVLAAVATVMALGVDVTQVQHGVRRLVPPAGRLQVF--TAGDGARAVVD--YAHTPDALN 362 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 A++ L PH GR I V G Sbjct: 363 NALAAL---RPHVSGRLICVFG 381 >gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 487 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 75/373 (20%), Positives = 148/373 (39%), Gaps = 38/373 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G + DG I A+++GA V + + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAVAYEVEGSSVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ VA R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 77 IPVKGLAAQLSD--VAGRFYGDPSRSLNMVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATAIAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E +AKA++F +N DD F L H Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYGAAKAKLF-AWPNLNCRVINLDDEFGRKLATLKHE--- 247 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIV 303 + ++ + +A + + + + + + + +G N+L +G + Sbjct: 248 SRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQR----LGGASKPLVVVDYAHTPDALE---KVLEAL 360 Query: 364 SPHGEGRRIAVLG 376 PH +GR + + G Sbjct: 361 RPHAKGRLLCLFG 373 >gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] Length = 478 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/323 (24%), Positives = 129/323 (39%), Gaps = 45/323 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I F AI G +DGH FI A+ GA +VV D V I I Sbjct: 23 ITNVTNDSRKIKKGGVFVAISGMEFDGHRFIDKAIANGANTIVVTED-VTEID--DINYI 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +++ V K +I +TG+ GKTTT M++ L + IG+ Sbjct: 80 KVKDSRVALAQISNVVCDFPSKKLRVIGVTGTNGKTTTASMISHILEHLNSPCTNIGTNG 139 Query: 145 NHIG-----VPLT---------LARMPVD--VDFGIFE-----LGMSHLGEIRFLTHLVR 183 I P T + ++ V+ +D + E L + L I F Sbjct: 140 TFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGIDF------ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV ++ H+ +E AK +FE +K N DD + KA+ Sbjct: 194 -DVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK---IANVDDEYGRKAKAR----- 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + Y+F +DF+ + + E+ K+++ V + N + + V Sbjct: 245 FEDAYTFSLENESDFKAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300 Query: 304 SILTADVDTAIKALSVFHPKEGR 326 ++L ++ K+L F E R Sbjct: 301 NLLGYELKDIAKSLESFTGVEAR 323 >gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] Length = 501 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 33/230 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA--------S 77 +++DSR + + F A+KG DG FI +A+++GA +++ + D + + Sbjct: 24 MTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQFARYN 83 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML--------- 126 + + V V + L+ +A + A +K +I ITG+ GKTTT ++L Sbjct: 84 LDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQWHNLLGG 143 Query: 127 ------TIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLT 179 TI + I + + I V LAR + DF E+ L + R Sbjct: 144 HSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQYR--V 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 ++ +A+ T ++ HL I +AK +F L+ + LN DD Sbjct: 202 EALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQV-LNADD 250 >gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 487 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] Length = 458 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 86/223 (38%), Gaps = 26/223 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + DSR++ P + F AI DGHD+I A+ GA T ++A GS + V Sbjct: 4 ALKTDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGA------TKIIAEHGSYKVETIIV 57 Query: 89 DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSY 143 + L L +I +TG+ GKTTT M L +KK A IG Y Sbjct: 58 ESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFY 117 Query: 144 NNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + P+ VD V++ + E+ L + R H + T Sbjct: 118 YGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFT 175 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + HL +E A+AK +F +N DD ++ Sbjct: 176 NLTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQ 218 >gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] Length = 494 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 41/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR+I + F AI G DG FI AV +GA VV + G + + Sbjct: 27 VEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWLNA 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV V ++ L++LA +I +TG+ GKTT +++ L + + A +G+ Sbjct: 87 VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188 N ++ +++ + EL +S G ++ + + V Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEVGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTI 247 T ++ HL +EE A AK +F K +N DD + A S+A+ + + Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKRLFTQ-HKCKHAVINVDDEVGKAWMADLSNAIAVSLL 265 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMTLG 301 +D+Q W S+ ++ E ++ G IG A N+L+ Sbjct: 266 ------PLSDYQQSVW--ASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFA 317 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L D T + S P GR + ++ Y P +++ A++ L Sbjct: 318 TLLSLGIDKQTLVDTASQLQPVIGRMELFQVPSKAKVVV----DYAHTPDALEKALAAL- 372 Query: 362 QISPHGEGRRIAVLG 376 H G+ A+ G Sbjct: 373 --RVHCSGKLWAIFG 385 >gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] Length = 494 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 40/334 (11%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 IG + + V+ I+ DSR+ F A KG D H F + V +G ++VVN D+ Sbjct: 16 IGTLDKEVVD-ITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLKG 74 Query: 77 SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + +P D L + LA + + +TG+ GKT+ M+ + + Sbjct: 75 EVTQIIVP-----DTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLN 129 Query: 135 KTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIR 176 K+ A +G+ I P T++ ++ VD G + M SH LG +R Sbjct: 130 KSSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLR 189 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF 232 V +A+ + + HL +E AK+ +F E L K + LN DD F Sbjct: 190 G----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFS 245 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E L ++ ++++G +A F+ ++ + E S +V +G Sbjct: 246 EYLA----SVTPYEVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYVGKFN 301 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V A + I+A+ P EGR Sbjct: 302 ISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGR 335 >gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] Length = 488 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 36/260 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKWKQC 266 S NADF++ +W + Sbjct: 257 ----SMNADFKVGSHQWMKA 272 >gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str. Bath] gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str. Bath] Length = 472 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 156/366 (42%), Gaps = 43/366 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT + +A + T+ IG N +G L + G + + Sbjct: 114 VAVAGTHGKTTTTSLTASILAEGGLDPTF-VIGGRLNSVGANAQLGQ-------GEYLVA 165 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P IAV+T I H+ + + + A E + G L Sbjct: 166 EADESDASFL-HL-QPMIAVVTNIDQDHMGTYGNDFGRLKDAFVEFLHHVPFYGAAVLCA 223 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVH 285 +D ++L S K ++G+ + D + ++ QS V QG + +E+ Sbjct: 224 EDPGVRDILPRLS-----KPYRTYGEREGVDIRAVGIQRLGLQSRFSVLRQGAEPLEITL 278 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALN--QGFFTL 341 + GYH N L +G+ + L +AL+ F G G+R++ LN G T Sbjct: 279 NLPGYHNILNALAAIGVATELGVADAVIQRALAGFR---GIGRRFQINACLNFGDGEITF 335 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D+ Y +P+ + A + P RR+ V+ F D +VLS ++ Sbjct: 336 VDD-YGHHPSELAATLDSARNAWPD---RRLVVVFQPHRYTRTRDLFE-DFVQVLSRVDV 390 Query: 402 S---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 V+ +G +A D +L R+I V ++ET + +F + + L GDVV+ Sbjct: 391 LILLEVYSAGEAPIAGADGRSLSRAIRVRGQIDPIFAETPEEVFDILPNVLKPGDVVMTL 450 Query: 451 SSNSCG 456 + S G Sbjct: 451 GAGSVG 456 >gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] Length = 530 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++L Q Q H+ V G+SI+S+++ + FFAIKG + DG+DFI + + L Sbjct: 3 YNLKQLFQKHN--------VKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVAL 54 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+ + I V V+DV AL + + +IA+TG+ GK++ + Sbjct: 55 VITDNKKNTIIDD---KVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIA 111 Query: 128 IALSSIKKTYACIGSYNNHIGVPL 151 S + K A IG+ IGV + Sbjct: 112 QTYSLLGKKAASIGT----IGVEI 131 >gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] Length = 485 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 95/409 (23%), Positives = 161/409 (39%), Gaps = 72/409 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR+I + F A KG DG+DF AV+ GA +A + S+ P Sbjct: 25 VRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVENGA---------IAVVSSIYNPFL 75 Query: 87 GVDDVLG---ALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V ++ +L + +AA+ + K ++ ITG+ GKTT ++ + K Sbjct: 76 SVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKTTVSHLIKFLFDACDKPSGL 135 Query: 140 IGSY-----NNHIGVPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 IG+ NN I T LA M V + + S +G + V Sbjct: 136 IGTIEHILGNNRIQDGFTTPESCLLQKYLAEM-VKSNLTAAVIETSSIGLVLDRLANVEF 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + V+T + HL EE AK ++F L +G +N D L +AK Sbjct: 195 DVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQLSDSGLAVVNND-----LPQAKQFLEAT 249 Query: 245 KTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYHMAQ 294 + + ++G + AD++ S + G +++H G IG + Sbjct: 250 RAVPVTYGIEQLADYR---------ASNLRFSPFGADFDLIHKGEIFPCHSPLIGQYNVY 300 Query: 295 NMLMTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFFTLIDESYNANP 350 N+L + + L D+ + ++ GR + + C + ID Y P Sbjct: 301 NVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPIQSGPCPI------YID--YAHTP 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++ L + P G G+ I V G C G+ +S +A+V+ Y Sbjct: 353 DALDNVCQTLRTLLPSG-GKLIVVFG--CG-GDRDRSKRKIMAQVVEKY 397 >gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC 35185] gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC 35185] gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC 35185] gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC 35185] Length = 457 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 118/282 (41%), Gaps = 37/282 (13%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPV 158 + A L + A IA+ G+ GKTTT ML +AL +H G+ P + V Sbjct: 97 INAALLNAAKGIAVAGAHGKTTTTSMLGVAL--------------DHAGISPTIIIGGEV 142 Query: 159 DVDFGIFELGMSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 DV G +LG + FL +RPHIAV+T I HL ++ + I A Sbjct: 143 DVLGGNAKLGKGEYLVSEADESDGSFLK--LRPHIAVVTNIEDDHLDHYGTLANIRKAFR 200 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E E ++ G L +D+ E ++ + LG K I S+ AD++ K + Sbjct: 201 EFLENIKPGGHAVLCFDN---ENVRDIAQTLGRKVI-SYAIDHEADYRAGKIEMHGAGVD 256 Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 V +GK + V + G H + L T+ + V+ L++FH G +R+ Sbjct: 257 FSVLHEGKDLGRVRLNLPGRHNVLDALATVVTGLSIGLTVEQMAAGLALFH---GAKRRF 313 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + ++D+ Y +P + + Q P RRI Sbjct: 314 QTKGRVQDVWVVDD-YAHHPTEIATTLLAARQTKP----RRI 350 >gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] Length = 493 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 83/345 (24%), Positives = 138/345 (40%), Gaps = 55/345 (15%) Query: 20 GIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 IVP+ + + +DSR+ P F A+KG DG +I A++KGA V+ D Sbjct: 11 AIVPKTIKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQH 70 Query: 79 GSLS----IPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSS 132 + +PV + L+++A L K T+I +TG+ GKTT ++L Sbjct: 71 LQIEWHQDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKL 130 Query: 133 IKKTYACIGSYNN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIR 176 + T A +G+ N + + +LA+ + DF E+ SH G ++ Sbjct: 131 LGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVS-SH-GLVQ 188 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELL 235 + +A+ T ++ HL +E A+AK +F L+ I +N DD E L Sbjct: 189 HRVEALDFDVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQI-INADDPVGVEWL 247 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-------------EQSWMEVQLQGKSME 282 A+ + F ++ +KW + + E SW +L Sbjct: 248 AELGSAVAVSCREDFHPTQ------KKWLKATKITFNNKGAHIQFESSWGNGEL------ 295 Query: 283 VVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 H G IG N+L+ + L D D ++ S GR Sbjct: 296 --HSGLIGEFNVSNLLLVFATLLSLDYDFDELLRTASSLTGVCGR 338 >gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp. m3-13] Length = 449 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+A II ITGS GKTTT ++ L++ KK+ G+ N V + +A+ + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGN---VSVEVAQQATEKDIMVT 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T + RP I+V + AHL ++E AKA+IF K + Sbjct: 167 ELSSFQL----MGTDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFNQTKEDYAVV 222 Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNAD 257 N DD+ +++K GI+ TI F +K D Sbjct: 223 NADDA--QVMKLSE---GIQPTIVPFSTNKTVD 250 >gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU121] Length = 494 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 40/334 (11%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 IG + + V+ I+ DSR+ F A KG D H F + V +G ++VVN D+ Sbjct: 16 IGTLDKEVVD-ITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLNG 74 Query: 77 SIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + +P D L + LA + + +TG+ GKT+ M+ + + Sbjct: 75 DVTQIIVP-----DTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLN 129 Query: 135 KTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIR 176 K A +G+ I P T++ ++ VD G + M SH LG +R Sbjct: 130 KNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLR 189 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFF 232 V +A+ + + HL +E AK+ +F E L K + LN DD F Sbjct: 190 G----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFS 245 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E L ++ ++++G +A F+ ++ + E S +V +G Sbjct: 246 EYLA----SVTPYEVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQVESPYVGKFN 301 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V A + I+A+ P EGR Sbjct: 302 ISNIMAAMIAVWSKGATFEEIIEAVKSLEPVEGR 335 >gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi subsp. zooepidemicus] gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi subsp. zooepidemicus] Length = 457 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 31/279 (11%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +D + L ++ +A L S+A II ITGS GKTTT M+ L+ ++ G Sbjct: 94 VRALDKAISILTEVELA-YLVSEAPIIGITGSNGKTTTTTMIADVLNVGDQSALLAG--- 149 Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 +IG P + +A+ D + EL L T +PHIAVIT + P HL Sbjct: 150 -NIGFPASEVAQAATAKDILVMELSSFQL----LGTEQFQPHIAVITNLVPTHLDYHGSF 204 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+ +AK I + + LN D + L K+ A + +S + + + + Sbjct: 205 EDYIAAKWRIQHRMTGKDYLVLNADQELVKSLAQKTKASPV--FFSTKEKVDGAYLADGY 262 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E+ M G G H +N L T+ + + + LS F Sbjct: 263 LYFKEERLMSAAELGVP--------GRHNIENALATIAVAKLRGISNQVISRTLSHF--- 311 Query: 324 EGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAIS 358 RG ++R LNQ T ++S + N + + A+S Sbjct: 312 --RGVKHRLQLVGTLNQ--VTFYNDSKSTNILACQKALS 346 >gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] Length = 490 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 158/386 (40%), Gaps = 39/386 (10%) Query: 18 SIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +G+ P+ V+ ++ DSR + F A+ G G DFI +A++ GAG ++ + Sbjct: 7 DLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTDR- 65 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIAITGSVGKTT----TKE 124 A I + + V+ A+A T++A+TG+ GKT+ T++ Sbjct: 66 AGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTRQ 125 Query: 125 M--------LTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVD-VDFGIFELGMSHLG 173 + + I + ++ + G + V L LA M D V E L Sbjct: 126 IWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGLD 185 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFF 232 + R VR A T + HL +E AK +F GL G + +N DD Sbjct: 186 QKRM--DGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHG 243 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290 + GI+ I G ++ A+ L+ + +++ +V + QG + +V + IG Sbjct: 244 LRVAEACSTRGIEVI---GVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGA 300 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G+V D + +V H EG R + A + I Y+ P Sbjct: 301 FQAMNVLTAAGLVIAGGEDPE---DVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTP 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 S++ A+ L PH GR + V G Sbjct: 358 DSLEVALKAL---RPHVLGRLVVVFG 380 >gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] Length = 491 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 157/391 (40%), Gaps = 58/391 (14%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++GH+ G V DSR + P + F AI G YDGHDFI A GA ++V + Sbjct: 19 LEGHTRGQVRN--------DSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHERE 70 Query: 74 MVASIGSLSIPVF-GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + L P + V D A +L +I +TG+ GKTTT ++ Sbjct: 71 LT---DYLEKPTYIRVTDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIF 127 Query: 131 SSIKKTYACIGS---YNNHIGVPLT------------LARMPVD-VDFGIFELGMSHLGE 174 + + I + + I P T LA M + + EL L + Sbjct: 128 RNAGEPCGLISTVEYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQ 187 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE---GLEKTGTIFLNYDDSF 231 R + R A+ T + HL +E AK F GL+ GT +N DD F Sbjct: 188 GRI--NGARFRTAIFTNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLD--GTAVINIDDEF 243 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + L + + + +FG + AD+ + + +E S + + ++ +V + IG H Sbjct: 244 GKRL---ARDISGRQQVTFGMTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTH 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKE------GRGKRYRCALNQGFFTLIDES 345 N+ + A +D +K ++ H GR + +R + F + Sbjct: 301 NIHNL------TGAILAALDYGLKPEAISHALNRPIRVPGRLEPFRASPEGPVFYV---D 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y ++K + +L +I+ +G+ IAV G Sbjct: 352 YAHTDDALKNVLEILRKIT---KGKLIAVFG 379 >gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae COH1] gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae COH1] Length = 451 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ +I ITGS GKTTT M+ L++ + G +IG P + + + D Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 162 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L + A TI F ++ D + KQ + +G++ Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265 Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305 M V G+ G H +N L T+ + + Sbjct: 266 IMSVDDIGVPGSHNVENALATIAVAKL 292 >gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] Length = 507 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 40/324 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPV 85 + I+ +S+ + F AIKG DGH +I A++ A +++ + S I SL Sbjct: 28 IKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADKSFINSLKEKY 87 Query: 86 FGVDDVLGALN---KLA-VAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTY 137 V +G+ N LA ++A+L + T IAITG+ GKTTT +L AL S K Sbjct: 88 KNVC-FVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKAALESAKNKI 146 Query: 138 ACIGSYNNHIGVPLTLARM--PVDVDF-GIFELGMSHLGEIRFLTHLVRP---------- 184 A IG+ N IG + P VD IF+ + ++H+V Sbjct: 147 ALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYK-----KNVSHIVMEASSQALAMDR 201 Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI----FLNYDDSFFEL 234 A+ T + HL ++ AK ++F L+++ +N +F+ Sbjct: 202 CDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTDYFKE 261 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293 +K L +K + ++G ++ AD+ + S+ S E +GK + V +G Sbjct: 262 IKNYIKKLDLKMV-TYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGEFNV 320 Query: 294 QNMLMTLGIVSILTADVDTAIKAL 317 N L L D++ IKA+ Sbjct: 321 VNSLSVLAYAYEYKLDIEKVIKAI 344 >gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile] Length = 484 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 45/269 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR + F IKG DGH +I A++KGA +V D VA G I Sbjct: 23 INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFIVEED-VAIKGCTFIK-- 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D + K+A K +I +TG+ GKT+ +L L+ K IG+ Sbjct: 80 -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138 Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 +NN + M V L ++ + E F Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + T + P HL +E+ AK ++F + T +N DD + + Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268 + + Y++G ADF R K S+ Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273 >gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale ART12/1] Length = 393 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 20/269 (7%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158 + A L + A IA+ G+ GKTTT M+++ L K IG + +++ L + Sbjct: 80 ILAYLLNDAKGIAVAGAHGKTTTSSMISVVLEHAKVDPTILIGGFVDYLKGNAKLGKS-- 137 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D+ + E S ++F P IAVIT I H+ ++ +E I A + + L+ Sbjct: 138 --DYLVAEADESDGSFLKFY-----PKIAVITNIEDDHMDHYGSMENIIKAFIQFVQNLD 190 Query: 219 K-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 K TG L +D+ E ++ + + K I S+ +AD+ + K + V + Sbjct: 191 KETGLAVLCFDN---ENIRNIADKVDRKYI-SYALDHDADYMAKDIKIDGPHTSFTVIYK 246 Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G+ + V I G H N L T+ + + ++ + VF G +R++ Sbjct: 247 GEVLGDVALNIPGKHNVLNALATIAVCHHMGLSIEEIAEGFKVF---SGTKRRFQTKFRN 303 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISP 365 ++D+ Y +P ++ I Q +P Sbjct: 304 ENVWIVDD-YAHHPTEIQTTIKAAKQTNP 331 >gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] Length = 503 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 21/223 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR++ + F A G DG FI A+ +GA V+ + + ++P Sbjct: 16 LNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWDAHNFVWDKAWTVPNI 75 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 G+ D+ LA A +I +TG+ GKT+T + AL K A IG+ Sbjct: 76 GISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCALIGTLG 135 Query: 145 NHI---------GVPLTLARMPVDVDF-------GIFELGMSHLGEIRFLTHLVRPHIAV 188 N P + + DF E+ L + R + VR +A+ Sbjct: 136 NGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRV--NGVRFDVAL 193 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +T ++ HL +E A+ K +F+ + +N DD+F Sbjct: 194 LTNLSRDHLDYHGDMESYAATKRRLFD-WQSLNYAVINLDDAF 235 >gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 487 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] Length = 497 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 124/318 (38%), Gaps = 39/318 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I DSR F AIKG DGHD+I A KG+ + ++N D+ ++ I V Sbjct: 26 ISDIVYDSRKAVKDSIFVAIKGETVDGHDYIKGAYDKGSRVFIINHDLEIEDDAIKIIVP 85 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---- 142 VL ++ + + + K ++ ITG+ GKTT + L+ IG+ Sbjct: 86 DSRRVLSRMSAIFFSEPTK-KLKVVGITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVF 144 Query: 143 YNNHIGVPLTLARMPVDVDFGIFE-----------------LGMSHLGEIRFLTHLVRPH 185 YN+ L ++ I E L M + +I F Sbjct: 145 YNDVAEKTLNTTPESYELQKTIKEMLDAGVECVAMEVSSSGLMMGRVDDIDF-------D 197 Query: 186 IAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 I V T ++P H+ E K+ +F GL K G I ++ +++ + + AK G Sbjct: 198 IGVYTNLSPDHIGPKEHPTFEHYRECKSRLF-GLCKYGIINVDDENAQYMVDHAKCPTCG 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTL 300 +S K N + + S ++ + K + V I G N L + Sbjct: 257 ----FSIDKESNIKAGNIELTRSSASLGVDFDYKLKDQDTVRTHICSPGEFSIYNALAVI 312 Query: 301 GIVSILTADVDTAIKALS 318 G+ D D ++ALS Sbjct: 313 GVCDHFGIDRDKMLEALS 330 >gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491] gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis alpha710] gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria meningitidis WUE 2594] Length = 506 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 485 LNMGAGSIN--RVPAALLE 501 >gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis alpha14] gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis alpha14] Length = 506 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 485 LNMGAGSIN--RVPAALLE 501 >gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis Z2491] gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M01-240355] Length = 468 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 331 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 387 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 446 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 447 LNMGAGSIN--RVPAALLE 463 >gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae Rd KW20] gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae Rd KW20] gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] Length = 488 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ VA IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA + T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKWKQC 266 S NADF++ +W + Sbjct: 257 ----SMNADFKVGSHQWMKA 272 >gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae 35/02] gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae MS11] gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID18] gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae DGI2] gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 35/02] gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae MS11] gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID18] gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae DGI2] gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 35/02] gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae MS11] gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID18] gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae DGI2] gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 445 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus agalactiae ATCC 13813] Length = 455 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ +I ITGS GKTTT M+ L++ + G +IG P + + + D Sbjct: 110 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 165 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 166 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 221 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L + A TI F ++ D + KQ + +G++ Sbjct: 222 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 269 Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305 M V G+ G H +N L T+ + + Sbjct: 270 IMSVDDIGVPGSHNVENALATIAVAKL 296 >gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae DGI18] gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA6140] gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA19] gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID24-1] gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID332] gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae SK-92-679] gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 1291] gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae FA19] gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID332] gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-92-679] gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 1291] gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae FA19] gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID332] gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-92-679] Length = 445 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36] gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36] Length = 503 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 24/229 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 VN + IDSR + + F AI G DG FI A++ GA V+ + D A G + Sbjct: 32 VNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDYIDQ 91 Query: 83 ---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 I FG++ L AL + +I +TG+ GK+T +++ ++ + Sbjct: 92 RPIISFFGLNQALSALAD-NFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGKAGV 150 Query: 140 IGSYNNHIGVPLTLARMP----VDVDFGIFE----------LGMSHLGEIRFLTHLVRPH 185 +G+ N + LT A +DV I + +S G I+ + + Sbjct: 151 MGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSHGLIQGRVNALDFD 210 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +A+ T + HL ++ A AK +F+G K LN DD++ ++ Sbjct: 211 VALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHK--ILNVDDAYGKM 257 >gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP6-BS73] gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP6-BS73] Length = 434 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 90 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 145 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 146 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 201 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 202 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 255 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 256 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 291 >gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus thermophilus LMG 18311] gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus thermophilus CNRZ1066] gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus thermophilus LMG 18311] gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus thermophilus CNRZ1066] gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus thermophilus ND03] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ + Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 I LN++ + L +++A Sbjct: 218 DFIILNFNQDLAKELATQTNA 238 >gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 500 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 144/385 (37%), Gaps = 61/385 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIQI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L L+ +G Sbjct: 85 PKIIVKDARYAMAIIASHFYGYPSNKIKLIGITGTNGKTTTSYLLEKILTDHGFQTGLMG 144 Query: 142 SYNNHIG-----VPLTLARMPV-----------DVDFGIFE-----LGMSHLGEIRFLTH 180 + +G + P+ + D+ + E L M + F T Sbjct: 145 NNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKT- 203 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---------LNYDDSF 231 AV T + HL EE K +F L G F LN DD Sbjct: 204 ------AVFTNLTQDHLDYHGTFEEYKQVKGLLFSRL---GNDFSTTDKKIAILNADDPS 254 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E K + A + ++G AD Q + + V E+ + +G Sbjct: 255 VEYFKKVTSA----EVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEKEINLNLVGRF 310 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L D+ + S+ H K G+ NQ F ++D Y P Sbjct: 311 NVYNALAAITVA--LVEDIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD--YAHTPD 366 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 +++ +VLS IS +G+ I V G Sbjct: 367 ALE---NVLSTISEFSKGKIITVFG 388 >gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus anginosus 1_2_62CV] gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus anginosus 1_2_62CV] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 13/157 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ ++ G + +IG P + +A Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQS----GLLSGNIGFPASQVATTATKN 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P H+ E +AK I + + K+ Sbjct: 162 DTLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + LN++ + + L AK+ A T+ F ++ D Sbjct: 218 DFLVLNFNQTLAKELAAKTQA----TVVPFSTTEKVD 250 >gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 487 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 149/372 (40%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E A+AKA++F +N DD+F L + Sbjct: 192 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 251 ITYSQLHSSAYLYCRDAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLSAVGALL 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 309 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 361 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 362 PHAKGRLLCLFG 373 >gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-23m63] gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] Length = 484 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 45/269 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR + F IKG DGH +I A++KGA +V D V G I Sbjct: 23 INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D + K+A K +I +TG+ GKT+ +L L+ K IG+ Sbjct: 80 -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138 Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 +NN + M V L ++ + E F Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + T + P HL +E+ AK ++F + T +N DD + + Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268 + + Y++G NADF R K S+ Sbjct: 246 KGINV-PCYTYGVDTNADFMARDIKSDSD 273 >gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae ATCC 700669] gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae ATCC 700669] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC0288-04] gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC0288-04] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] Length = 467 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 161/368 (43%), Gaps = 35/368 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSIPVFGV 88 +DSR + P F A+ G G +FI +A+++GAG ++ + + + SLS V Sbjct: 1 MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60 Query: 89 DDVLGALNKLAVAARL---RSKATIIAITGSVGKTT----TKEMLT-IALSSIK-KTYAC 139 + LA AA L T+IA+TG+ GKT+ T+++ + ++ T Sbjct: 61 AE--DPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGV 118 Query: 140 IGSYNNHIG----VPLTLARMPVDVDF-GIFELGM---SHLGEIRFL--THLVRPHIAVI 189 G+Y+ +G P+TL RM + G+ M SH R L HLV A Sbjct: 119 EGAYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLV---AAGF 175 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T HL + +E +AKA +F L + G +N +DS + A + G + + Sbjct: 176 TNFTQDHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERG-QDLI 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G+ AD +L+ + + + + + + ++ IG A+N+L+ G+ A Sbjct: 235 TVGREVGADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGA 294 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D + + L GR + + G +D Y P ++ AI L PH Sbjct: 295 DAERVFETLPGMKTVRGR-MQLAATRDTGATVFVD--YAHTPDAVATAIKAL---RPHVM 348 Query: 369 GRRIAVLG 376 GR IA++G Sbjct: 349 GRLIAIVG 356 >gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus agalactiae NEM316] gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae 515] gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316] gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae 515] Length = 451 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 23/207 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ +I ITGS GKTTT M+ L++ + G +IG P + + + D Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAADDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 162 DILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L + A TI F ++ D + KQ + +G++ Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265 Query: 281 MEVVHH-GI-GYHMAQNMLMTLGIVSI 305 + +V G+ G H +N L T+ + + Sbjct: 266 IMLVDDIGVPGSHNVENALATIAVAKL 292 >gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae NCCP11945] gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria gonorrhoeae NCCP11945] Length = 445 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVMNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKRFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q S ++ LQG Sbjct: 252 GTGCLKQGNEDLISTQDIPLQG 273 >gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] Length = 489 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 23/149 (15%) Query: 6 TFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T DLL I GH+ G VP + I+ DSR + P F A+ G DG FI A+ Sbjct: 10 TMADLLALIAGHARLERGGSVP---IAAITSDSRKVGPGTLFVAVPGTKADGARFIPDAL 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V++ + + +P+ DV +L A R TI+A+TG+ GKT+ Sbjct: 67 AKGAAAVLMEP--TGAPPDMDVPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTS 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP 150 E +++ +A H+G+P Sbjct: 125 VAEF-------VRQIWA-------HLGIP 139 >gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP9-BS68] gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae SP195] gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP9-BS68] gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae SP195] gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA17570] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ +F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVAFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis OX99.30304] Length = 469 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae TIGR4] gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae TIGR4] gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae TIGR4] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus anginosus F0211] gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus anginosus F0211] Length = 450 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 13/157 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQN----GLLSGNIGFPASQVATTATQN 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P H+ E +AK I + + K+ Sbjct: 162 DTLVMELSSFQLMGIETF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + LN++ + + L AK+ A T+ F ++ D Sbjct: 218 DFLILNFNQTLAKELAAKTQA----TVVPFSTTEKVD 250 >gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126] gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126] Length = 465 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 63/303 (20%), Positives = 138/303 (45%), Gaps = 25/303 (8%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPV 158 V +L +A+ G+ GKTTT M+ L S KK A +G + + + + Sbjct: 105 VLGKLTEGMFTVAVAGTHGKTTTSSMIAHLLKSGKKDIAGFLGGITTNYDTNMIMNQS-- 162 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D I + FLT ++P++AV+T+ HL + +EE+ + + E + Sbjct: 163 DYKKAIIVVEADEFDR-SFLT--LKPNVAVVTSTDADHLDIYGKLEELKKSFSLFLENVN 219 Query: 219 KTGTIFLN---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 +G I++ +++ + +KAK + G+ G + Q++ K + + Sbjct: 220 PSGQIYIKDGLWEEIATKRIKAKPSSYGLNA----GDIRALHVQVKDAKFVFDVTLDNKV 275 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 ++G + V G+H +N ++ + I + L ++ + + +G +R+ + Sbjct: 276 IKGFQLSVP----GFHNVENAVVAIAIANQLGLSDKEILEGIRTY---QGVKRRFEYVIQ 328 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + F ID+ Y +P+ +KA ++ + + P G++++VL + ++ F ++ ++ Sbjct: 329 RNDFVFIDD-YAHHPSEIKAMLTSVRALYP---GKKVSVLF-QPHLYSRTRDFAVEFSQS 383 Query: 396 LSL 398 LSL Sbjct: 384 LSL 386 >gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum WAL-14673] gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum WAL-14673] Length = 459 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 47/382 (12%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141 IP+ ++LG + +++ IAI G+ GKTTT M+T I L + +G Sbjct: 94 IPMMSRAELLGQM--------MKNYREAIAIAGTHGKTTTTSMVTEIFLEADNNPTISVG 145 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 N IG ++ G E ++ E FL+ P +AVI I HL Sbjct: 146 GILNSIGG---------NIRVGGPEFFVTEACEYTNSFLSFY--PTMAVILNIEEDHLDF 194 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F I++I + + E + + GTI +N + L A + + +FG SK D+ Sbjct: 195 FKNIDDIRRSFRQFIEKVPENGTIIMNGTIENWRELTAGAAG----KVVTFGNSKENDYS 250 Query: 260 LRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + S+ ++ ++G+ E + G+ G H N L + + A ++ A + Sbjct: 251 FDAVVYDEYARPSF-DLYIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRG 309 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAIS-----VLSQISPHG 367 L F G +R+ T+ID+ Y +P A++KAA + + PH Sbjct: 310 LLKF---TGTNRRFEKKGELKGITIIDD-YAHHPQEIEATLKAAENYPHKRICCAFQPHT 365 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 R A + + + LS + + L ++ + +S ++AL + + Y Sbjct: 366 YTRTKAFMKEFAQA--LSLADCVMLTDIYPARETDTLGVSSADIVAL--LKEKGVDAWYL 421 Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449 T D + FI + GD+++ Sbjct: 422 PTFDDMEKFILENCTQGDLLIT 443 >gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis UMN179] gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis UMN179] Length = 480 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 154/380 (40%), Gaps = 55/380 (14%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IA+ G+ GKTTT M+ + A + + T+ G N H+G+ L + D Sbjct: 126 IAVAGTHGKTTTTAMIAMIYAQAKLDPTFVNGGLVKSAGTNAHLGLSRYLIAEADESDAS 185 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P +AV+T I P H+ + G EE+ L G Sbjct: 186 FLHL---------------QPMVAVVTNIEPDHMDTYHGNFEEMKQTYINFLHNLPFYGL 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 L DD + L K +G + + ++G S AD+++ + Q Q + + G+ M Sbjct: 231 AVLCADDPVLQTLLPK---VG-RQVITYGFSDKADYRIEDYSQTGFQGHYTVICPDGQRM 286 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337 E++ + G H A N L + D ++ + AL+ F +G G+R+ G Sbjct: 287 EILLNVPGKHNALNATAALAVAKEEGIDDESILAALADF---QGAGRRFDQLGSFIRPNG 343 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 LID+ Y +P + I Q + HG E +RI ++ F D +VL Sbjct: 344 KVMLIDD-YGHHPTEVNVTI----QAARHGWENKRIVMIFQPHRYSRTRDLFD-DFVQVL 397 Query: 397 SLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGD 445 S ++ V+ +G +A D+ + +D +FL + L DGD Sbjct: 398 SQVDVLIMLDVYPAGEAPIAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGD 457 Query: 446 VVVVKSSNSCG--FYRLINL 463 +++ + + S RL+ L Sbjct: 458 LILAQGAGSVSKLSRRLVEL 477 >gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus oralis ATCC 35037] gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus oralis ATCC 35037] gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus oralis ATCC 35037] gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus oralis ATCC 35037] Length = 450 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTQEKVDGAYLEDGQLYFRG--EVVMAASE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] Length = 492 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 49/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTI-----FLNYDDSFFELLKA 237 IAV T + HL +E K+ +F L TI LN DD E K Sbjct: 195 -KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPSVEYFKK 253 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + ++G AD Q + + V +EV + +G N L Sbjct: 254 ITSA----EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNAL 309 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + +LS EGR + NQ F ++D Y P +++ Sbjct: 310 AAITVALVEGIPLTNISDSLSNLKSIEGRME--IIDENQDFLVIVD--YAHTPDALE--- 362 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VLS I +G+ I V G Sbjct: 363 NVLSTIREFAKGKIITVFG 381 >gi|229196429|ref|ZP_04323176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228587066|gb|EEK45137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 147 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FT+I++++NA+P+SMKAAI L +++ + +++ V+GDM E+G+ +++H ++ ++L+ Sbjct: 20 FTIINDAWNASPSSMKAAIETLQKLNAY--KKKMIVIGDMLELGKKGETYHREIGKMLNE 77 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSC 455 +I +V+ G + + ++ H ++ D + L DVV++K S Sbjct: 78 ESIQYVFTYGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGM 137 Query: 456 GFYRLI 461 ++ Sbjct: 138 ALEEIV 143 >gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] Length = 491 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 101/413 (24%), Positives = 171/413 (41%), Gaps = 58/413 (14%) Query: 7 FHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++ I+ H I ++ +N GI+ DSR + FFA+ G DG ++I A+ KG Sbjct: 4 LKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAISKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSK-ATIIAITGSVGKTTT 122 A V + ++ G +P+ V ++L L+K+ + SK II +TG+ GKTTT Sbjct: 64 ASAVFLEGEVNNIYG---VPLVRVREILDVLSKVSSYFYDFPSKYLNIIGVTGTNGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIG---------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 +L S IG SY ++ P P D+ + ++ Sbjct: 121 TNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTP-----QPQDLQEILRKMVDR--- 172 Query: 174 EIRFLTHLVRPHI-------------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 E++FL + H AV T + HL +EE AK +IF LE Sbjct: 173 EVKFLAMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDG 232 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G +N D+ + + + + ++ KN D L+K + + +E+ Sbjct: 233 GFAVINRDNEWTGRISLPNRRVFWVSL------KNGDLYLKKHENTNNGMLLEIGTPLGD 286 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + G N+L +G++ L ++ K LS F +GR + R Q F Sbjct: 287 LIIDTKLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREG--QNFDV 344 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMGELS 385 ++D Y P + +VL + +GR I V G +MGE+S Sbjct: 345 IVD--YAHTPDGL---FNVLQTVKEFTKGRVIVVFGCGGDRDPTKRDKMGEIS 392 >gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus thermophilus LMD-9] gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus thermophilus LMD-9] Length = 450 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ + Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 I LN++ + L +++A Sbjct: 218 DFIILNFNQDLAKELATQTNA 238 >gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] Length = 497 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 154/376 (40%), Gaps = 46/376 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ P + + A+ G G DF+ A GA V+ + + +P Sbjct: 26 ITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAGLPAL 85 Query: 87 GVDDVLGALNKLAVAARLRSKATI----------IAITGSVGKTTTKEMLTIALSSIKKT 136 VDD + +LA ATI I ITG+ GKTTT ++ L + K T Sbjct: 86 VVDDPRARMGELA--------ATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST 137 Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------- 185 IG+ IG + P D M G + V H Sbjct: 138 -GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-TEAVAMEVSSHALVLGRVDA 195 Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 IAV T ++P H+ SG+E+ AKA++F +++ +N DD + L AK Sbjct: 196 CVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEYGRRL-AKEAT 253 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + T YS +AD++ + + + ++ + +G+ + G N L + Sbjct: 254 VPVVT-YSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLAGPFNVANTLAAI 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ D +A ++ GR + R Q FF ++D ++ + A SVL Sbjct: 313 VALAAAGLDPQSAADGVAAVPGVPGRLE--RVDEGQPFFAVVDYAHKTD-----AVESVL 365 Query: 361 SQISPHGEGRRIAVLG 376 + EG+ AVLG Sbjct: 366 RALRKVTEGKLHAVLG 381 >gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes L99] Length = 491 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 154/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL ++E A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A + +FG + ADF+ + S S ++ Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V IG N+L + L ++ AI L +GR + Q F ++ Sbjct: 292 VKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAG--QAFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I+ E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIAEFAEKRVFVVVG 378 >gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus TK-6] Length = 452 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 61/405 (15%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + IPV D+L L +L IA+ GS GKTTT M+ + Sbjct: 87 KMGIPVIPRGDMLAELFRLKEG---------IAVCGSHGKTTTTSMIAHMVHE------- 130 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHL 197 Y+ + + L + + G +L +S E FL L P +AVIT I HL Sbjct: 131 -AGYDPTVIIGGVLQKFGSNARLGKDQLIISEADESDGSFLKLL--PTVAVITNIDREHL 187 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNA 256 + ++EI SA + G +N DD + E++K+ L +FG + A Sbjct: 188 GYYKDLDEIKSAFLRFANSVPFYGFCVMNADDENSREVMKSVKAPL-----ITFGIEREA 242 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIK 315 R ++ +GK + +H + G H N L + + + V K Sbjct: 243 HLMARNLSLEGGCYSFDLFYEGKPLTRIHMSVAGRHNVYNALAGIAVCLRMGISVSNIKK 302 Query: 316 ALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQI---------- 363 AL F E R + +G+F + + Y +P ++A I L ++ Sbjct: 303 ALESFKNAERRLE------FKGYFKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVF 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 PH R + D E+ + A+V L +I + ++ +D L ++ Sbjct: 357 QPHRYSRTYYLFKDFVEV--------LKEADVCLLTDIYSAGEENSYGVSAQD-LAKAAG 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + E + LF I+ + D DV++ + S I+ EEF Sbjct: 408 CAFFENKEELFDAIEKKVKDADVILFMGAGS------ISRWCEEF 446 >gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae R6] gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae D39] gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus pneumoniae R6] gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae D39] Length = 450 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. Tu6071] gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. Tu6071] Length = 454 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 + A+ + +PV+G + +A RLR A +A+TG+ GKTTT ML L Sbjct: 66 LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 116 Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A +G +IGV L LA P DV EL L VRPH A Sbjct: 117 AAGHRTAAVG----NIGVSLLDAVLAEEPYDV--LAVELSSYQL----HWAPSVRPHSAA 166 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247 + +AP HL + A+ K ++EG + ++ + D + EL++A G + I Sbjct: 167 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 225 Query: 248 YSFGKSKNADF 258 ++ G + ++ Sbjct: 226 FTLGTPRPSEL 236 >gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM 43833] gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM 43833] Length = 472 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMP 157 A+AA + + T IA+ G+ GKTTT MLT+AL + C+G LA Sbjct: 107 ALAAVMEGR-TGIAVAGTHGKTTTTSMLTVALQKCGADPSYCVGGL---------LATTG 156 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + D G +L ++ E ++RP IA++T + HL N+ + + + A + Sbjct: 157 LGADDGAGDLFVAEADESDGSFLMLRPAIAIVTNVEADHLDNYGDVRAVHESFARF---V 213 Query: 218 EKTGTIF-LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 E+ G++ L DD L A + G+ T+ ++G+S AD++ Sbjct: 214 ERVGSLLVLCADDPGSAALAAPARERGL-TVVTYGESAGADYR 255 >gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] Length = 491 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 154/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL ++E A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A + +FG + ADF+ + S S ++ Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V IG N+L + L ++ AI L +GR + Q F ++ Sbjct: 292 VKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAG--QAFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I+ E R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIAEFAEKRVFVVVG 378 >gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 2336] gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336] Length = 495 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 29/222 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87 +DSR F AIKG DG +FI+ A+Q GA V+ TD+V ++S IP+ Sbjct: 28 LDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVSFEQNIPLIA 87 Query: 88 VDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 ++ L+ +A R S + T++ +TG+ GKTT ++L + T A +G+ Sbjct: 88 YYELSKHLSH--IADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHTSAVMGTI 145 Query: 144 NN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N I + +L + + DF E+ L + R R Sbjct: 146 GNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEALTFRA--G 203 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + T ++ HL +E A AK +F L I LN DD Sbjct: 204 IFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI-LNVDD 244 >gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 492 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 23/225 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V + +DSR + P + F AIKG DG FI A++ GA + + D + S Sbjct: 16 PSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIENGA--IAIIADRLCEFESSF 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 P++ V ++ L +L A+R S+ + +I +TG+ GK+TT M+ A Sbjct: 74 EPLYLVSELDKKLPEL--ASRFYSQPSQTLDLIGVTGTNGKSTTTAMIAHLAQFCSTESA 131 Query: 139 CIGS--YNNHIGVPLTLARMPVDVDFG--IFELGMSH--LGEIRFLTH-LVRPHI----- 186 IG+ Y + + + P VD + +L H L + +H LV+ + Sbjct: 132 IIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAMEVSSHGLVQQRVAKCQF 191 Query: 187 --AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 AV T ++ HL + AK +F E + LN DD Sbjct: 192 KAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQ-VVVLNQDD 235 >gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM 12563] gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM 12563] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 163/404 (40%), Gaps = 50/404 (12%) Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------IAITGSVGKTTTK 123 + D+ A + S +I + V K+ V +R A + IAI+GS GKTTT Sbjct: 63 IEDDITAVVTSSAISPANEEIVAAKAKKITVISRGEMLAELMRLRYGIAISGSHGKTTTT 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ + CI NH + + ++ + E S +R + Sbjct: 123 SLISQIMMHAGLNPVCIIG-GNHFNLKSNAVCNDLSSEYMVCEADESDGSFLR-----LS 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T I HL + +E + A E + G FL +++ L ++ Sbjct: 177 PVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCFENDVVRDLSKSAN--- 233 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ------SWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K YS+G K+ DF + K E ++ + G E IG H N L Sbjct: 234 -KKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLG---EFSVPLIGEHNILNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++G+ L DV + L F EG G+R L TL D+ Y +P +KA + Sbjct: 290 ASIGVAYHLGIDVPNIKEGLKTF---EGVGRRLN-KLYDKEITLFDD-YAHHPTEIKATL 344 Query: 358 S----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVW 405 S +++ PH R +L D +F+ D EV+ +Y Sbjct: 345 SSVRNAYKSRRIIAVFQPHRYSRTELLLND------FEYAFN-DADEVIITDIYAAGEAP 397 Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448 ++G + + D + + + +V Y + +D + ++S DGD+++ Sbjct: 398 IAGVNGEIICDIVKKQNKNVRYIKNIDEVLPVLESIKKDGDIII 441 >gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae Hungary19A-6] gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae Hungary19A-6] Length = 450 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVIPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae G54] gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54] gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae G54] Length = 450 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLVKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] Length = 506 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 152/368 (41%), Gaps = 30/368 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ P + + A+ G G DF+ A GA V+ + + +P Sbjct: 35 ITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAGLPAL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD + +LA + I ITG+ GKTTT ++ L + K T IG+ Sbjct: 95 VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + V H IAV Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-TEAVAMEVSSHALVLGRVDACVFDIAVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++P H+ SG+E+ AKA++F +++ +N DD + L AK + + T YS Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEYGRRL-AKEATVPVVT-YS 269 Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +AD++ + + + ++ + +G+ + G N L + ++ Sbjct: 270 AEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLAGPFNVANTLAAIVALAAAGL 329 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D +A ++ GR + R Q FF ++D ++ + A SVL + E Sbjct: 330 DPQSAADGVAAVPGVPGRLE--RVDEGQPFFAVVDYAHKTD-----AVESVLRALRKVTE 382 Query: 369 GRRIAVLG 376 G+ AVLG Sbjct: 383 GKLHAVLG 390 >gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. SA3_actG] gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. SA3_actF] Length = 474 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 26/191 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 + A+ + +PV+G + +A RLR A +A+TG+ GKTTT ML+ L Sbjct: 86 LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILE 136 Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A +G +IGV L LA P DV EL L VRPH A Sbjct: 137 AAGHRTAAVG----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAA 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247 + +AP HL + A+ K ++EG + ++ + D + EL++A G + I Sbjct: 187 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 245 Query: 248 YSFGKSKNADF 258 ++ G + ++ Sbjct: 246 FTLGTPRPSEL 256 >gi|296272623|ref|YP_003655254.1| Mur ligase middle domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096797|gb|ADG92747.1| Mur ligase middle domain protein [Arcobacter nitrofigilis DSM 7299] Length = 478 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 28/281 (9%) Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVD 159 RL+S IIAIT S GKT+ K L L S Y S N G+ L + R +P + Sbjct: 150 RLQSIKDLKIIAITASYGKTSIKNYLYQILKSKFNAYKTPRSVNTLAGLVLDVNRDLPEN 209 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 I E G G+I +++ + A++ + H+ F ++ I K EI + Sbjct: 210 TQIYIAEAGARMQGDIEEISNFLHQDYAILGQVGEQHIEYFKTLDNIIHTKMEILKSP-- 267 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +++KA H I + K + L K + W +V + K Sbjct: 268 -------------KMIKAFVHESV--PILDYEKIEKFPNDLNITKSNLDGIWFDVNIDEK 312 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +G A N+ + + L +D AL P E R ++ + G Sbjct: 313 QEHFYAPILGSFNAVNLTACILMAKELGMSIDQIKIALDKIKPVEHRLQK----IEAGGK 368 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +ID+S+N N M A+++ S+ +GR++ + + E Sbjct: 369 VIIDDSFNGNFEGMLEAVNLCSEY----KGRKVIITPGLVE 405 >gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 495 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 82/363 (22%), Positives = 147/363 (40%), Gaps = 28/363 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V Q + GIS S + F AI G DG +I +A+++GA L+V +D+ A Sbjct: 24 VEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERGASLIVTESDLTA---RE 80 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++P VD+ L+ L A +I ITG+ GKTTT L L A Sbjct: 81 NVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTTALFLQHLLKKAGFEVAY 140 Query: 140 IGSYNNHIGVPLTLARMPV-------------DVDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ N I +++ + D + E L + R ++ Sbjct: 141 FGTVYNEITCQRYESKLTTPSATEIQASLAWSNDDVVVIETSSQGLHQYRMAG--MQFDY 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL + +E AK +F ++ G +N + L + A G + Sbjct: 199 ALFTNLQHDHLDYYKTMEAYYQAKKSLFSLMKADGKAVINSYTMWGNRLAKELAANGKQV 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305 + K + L K ++ + + QG +E + + G + +N+++ ++ Sbjct: 259 LTVDTKKGATSYVLDK---TTDTAVVAFNGQGGQIEEIEAPLSGVYNQENLILATTVMVD 315 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D +A++ F GR + Y A G ++D Y P +++A ++ L+ P Sbjct: 316 LGLDAGNTNEAIADFAGIAGRLEYYPLA--DGNEMVVD--YAHTPDAIEALLTTLNAQYP 371 Query: 366 HGE 368 + E Sbjct: 372 NHE 374 >gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] Length = 505 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 41/334 (12%) Query: 1 MNPLWTFHDLLQAI--QGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 + P T L AI QG I +V P V G+SIDSR++ P EA FA KG + ++ Sbjct: 5 LPPETTLSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGP-EALFACKGAAFKPA-YL 62 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDV--LGALNKLAVAARLRSKATI 110 A+ GA + + +S LS GV DD+ A A R + I Sbjct: 63 EDALNAGAAAYLCDE---SSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDI 119 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVD-----FG 163 + ITG+ GK+TT +L ++ + IGS G+ + P VD F Sbjct: 120 MGITGTKGKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFN 179 Query: 164 IFELGMSHLGEIRFLTHLVRP--------HIAVITTIAPAHL--SNFSGIEEIASAKAEI 213 E G HL + +H ++ +A I H+ S E+ ++K I Sbjct: 180 TAESGRKHL-VMEVSSHALKYDRTLGLMLDVACFLNIGRDHISPSEHPSFEDYFASKLRI 238 Query: 214 FEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSW 271 F ++ T +N D D E+L+ HA + + +FG + AD+ R + C + Sbjct: 239 F---DQCRTAVVNLDSDLVDEVLE---HARRAERLLTFGVDRPEADYSARDVRPCRDGIA 292 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ +G + + G A+N L + + I Sbjct: 293 FDLACEGGARPMTLGMAGLFNAENALAAIAMARI 326 >gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 488 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS195] gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS195] gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS678] Length = 499 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 28/228 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--------- 80 +++DSR+I + F A+ G DG FI A+ A V+V+TD G Sbjct: 23 LTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLSAAAVLVHTDDADQHGKVLHSDNAEH 82 Query: 81 -LSIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKT 136 + I VF + + A+ +S T +I ITG+ GKT+T +++ ++S+ + Sbjct: 83 GVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLITSLGRK 142 Query: 137 YACIGSYNNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLV 182 A +G+ N + +TL R D + + + +S G ++ V Sbjct: 143 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQGRVDAV 202 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +AV T + HL +E A+AK +F G LN DD+ Sbjct: 203 PFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR-FSTLGHGLLNLDDA 249 >gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes 266] Length = 529 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 25/269 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 46 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAEAGVPII 105 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + R T+ ITG+ GKTTT ++ L + IG+ Sbjct: 106 VVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTIGTIG 165 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAV---------- 188 + G L AR P D G+F M+ G + + +A+ Sbjct: 166 FRLDGEELPSARTTVTTPESPDLQGLF-AAMAERGASDVVMEVSSHALALQRVDGTCFDV 224 Query: 189 --ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 225 VAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVK 282 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + + +D+Q+ W+ + +V Sbjct: 283 AVTT-SIHQPSDYQVTSWQAARAGAIFDV 310 >gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 489 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 87/369 (23%), Positives = 149/369 (40%), Gaps = 40/369 (10%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +Q +G +P+ + I+IDSRS+ P F IKG DGHD+ AV GA V+V Sbjct: 11 MQKKVVGQLPK-LITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGA-TVIVTER 68 Query: 74 MVASIGSLS-IPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTI 128 ++ G ++ + V LG L AA+ +I +TG+ GKT+ ++ Sbjct: 69 LLQLDGEIAQVIVKNTTRTLGIL-----AAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHN 123 Query: 129 ALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH- 185 L + + A G+ N GV A D ++ E R + V H Sbjct: 124 ILIGLGEKSALSGTIGFNLNGVLYESANTTSD-SLNTQQMIFRAKSEGCRAMVMEVSSHG 182 Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDD 229 +AV T + HL +E + K +F + LEK + LN DD Sbjct: 183 LALGRLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADD 242 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + E + + I+++G NA F+ + + +++ + V H +G Sbjct: 243 PWSE----RYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLG 298 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + ++ I+ + + P +GR ++ L F ID Y Sbjct: 299 EFNIYNVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLPIQIF--ID--YAHT 354 Query: 350 PASMKAAIS 358 P +++ AI+ Sbjct: 355 PDAIEKAIN 363 >gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 785 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 69/322 (21%), Positives = 134/322 (41%), Gaps = 54/322 (16%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV+T + V + L IP L++ + A L ++ IA+ GS Sbjct: 70 RGADAIVVSTAIPYDNPEVIAAWDLRIP---------KLHRSDINAALVNEYDGIAVAGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEI 175 GKTTT M+ + L +H+G T+ V + +LG + LG Sbjct: 121 HGKTTTTSMIGVTL--------------DHVGASPTII-----VGGEVPDLGTNAKLGTS 161 Query: 176 RFLTH----------LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 R+L +RPHIAV+T + H+ ++ +E+I +A + E ++ G L Sbjct: 162 RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIAAFRQFIEQVDTDGAAVL 221 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 ++++ + ++ + + S+ AD++ + V +G M + Sbjct: 222 CFENANLRNIARETK----RCVVSYAIDYEADYRASDIETRGSLISFTVHERGAEMGHIS 277 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 I G H N L + + ++ + AL+ FH G +R++ + ++D+ Sbjct: 278 LNIPGRHNVLNALACIAVARLVGVEFPAIRAALAQFH---GAKRRFQTKGKERGVWVVDD 334 Query: 345 SYNANPASMKAAISVLSQISPH 366 Y +P + ++ Q +P Sbjct: 335 -YAHHPTEISVTLAAARQTNPE 355 >gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas tunicata D2] gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas tunicata D2] Length = 478 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 26/263 (9%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + + T+ IG N G L F + Sbjct: 116 IAIAGTHGKTTTTSLIASVFAEAELDPTF-VIGGLLNSAGTNAKLGS-------SRFLIA 167 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P ++VIT I H+ + G E + E L G + Sbjct: 168 EADESDASFL-HL-QPMVSVITNIEADHMDTYQGDFENMKDTYIEFIHNLPFYGLAVVCC 225 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD E++K G K + ++G+S AD+++ + Q S V QG S+ V + Sbjct: 226 DD---EVVKELIPRFGRKFL-TYGQSSQADYRMSDFVQSGNTSQFVVTDKQGHSLNVKLN 281 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342 G H A N + + D I+AL+ F EG G+R+ A +G L+ Sbjct: 282 MPGLHNALNATAAIAVAKDEGIADDAIIRALAKF---EGIGRRFEHYGNFATERGDIMLV 338 Query: 343 DESYNANPASMKAAISVLSQISP 365 D+ Y +P+ + A I Q P Sbjct: 339 DD-YGHHPSEVAATIKAARQGWP 360 >gi|297519212|ref|ZP_06937598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli OP50] Length = 218 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 13/157 (8%) Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 AIKA L+ GR + A NQ L+D+SYNAN SM AA+ VL+++ G R Sbjct: 68 AIKAGLANLKAVPGRLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYR 120 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 + V+GDM E+G S++ H+ + E I V G A+ A + H+++ Sbjct: 121 VLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKT- 177 Query: 432 GLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 L ++S + + V ++VK S S ++ L E Sbjct: 178 ALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 214 >gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 494 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 27/233 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVASIGS 80 + + +DSR I F AIKG DG FI A+Q+GA ++ V +GS Sbjct: 27 IQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAAIQQGANAIIAEAGEQNVHGKVEQLGS 86 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +S V + D+ L++LA + S +IA+TG+ GKTT +++ L + A + Sbjct: 87 VS--VVYIADLSQKLSQLASRLQPLSYNQLIAVTGTNGKTTITQLIAQWLELSGQRAAVL 144 Query: 141 GSYNNHIGVPLTLA------RMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHI 186 G+ N LT A + + E + +S G ++ + + Sbjct: 145 GTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGAQYTAMEISSHGLVQNRVKALSFSV 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELL 235 V + ++ HL +EE A AK +F + +N DD S+ ELL Sbjct: 205 GVFSNLSRDHLDYHGTMEEYARAKLSLFT-VHDCAKAVINIDDTVGASWVELL 256 >gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP19-BS75] gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP19-BS75] Length = 450 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155] gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185] gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195] gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223] gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183] gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175] gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155] gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185] gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195] gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223] gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183] gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175] gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678] Length = 488 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 55/372 (14%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287 D+ + + +G + + ++G S +AD Q + Q Q V+ +GK+ +++V + Sbjct: 234 DAVVREIMPR---IG-RQLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKADLDLVLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADV--DTAI-KALSVFHPKEGRGKRY----RCALNQGFFT 340 G H N+L L +++ T D D+AI +AL F +G G+R+ + A +G Sbjct: 290 PGQH---NVLNALAAIAVATEDEIDDSAITQALVEF---QGIGRRFQHLGKFATPKGEVM 343 Query: 341 LIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 L+D+ Y +P+ + A I ++ PH R + D E+ LSQ + Sbjct: 344 LVDD-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFVEV--LSQ---V 397 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDG 444 D +L +Y+ ++G A AL RSI + + + D L + L +G Sbjct: 398 DCLLLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEG 453 Query: 445 DVVVVKSSNSCG 456 D+++ + + + G Sbjct: 454 DLLLTQGAGNIG 465 >gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Amoebophilus asiaticus 5a2] gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus 5a2] Length = 487 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 81/370 (21%), Positives = 139/370 (37%), Gaps = 36/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR F A+ G DGH +I A+ G+ ++ + + + Sbjct: 24 IKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSKAIIC--EKYPEHLATHVTYI 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V +V AL +A +K ++A+TG+ GKT+T +L + + + + + Sbjct: 82 QVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKTSTVHLLYRLFRQLGYSVGMLSTIH 141 Query: 145 NHI---GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AV 188 N I P TL P +D M G +F H A+ Sbjct: 142 NQINDQAFPSTLT-TPNAIDINKALAQMVTAG-CQFCFMEASSHAIVQNRLAGLELAGAL 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I+ HL + AK ++F+ L + N DD +++ + A T Y Sbjct: 200 FLNISHDHLDYHLTFDAYIQAKKKLFDELTANAFVLYNIDDKRGKIMIQNTRA----TTY 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + ADF Q +W ++L+ V +G A N+L +L Sbjct: 256 SMAIQRPADF----TAQVLANTWQGLELRIGGQNVWFQLLGTFNASNLLAAYATACLLGQ 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI--SPH 366 + ALS P GR + +ID Y P +++ + + QI S Sbjct: 312 PSQDILVALSSIKPITGRFQHIHTPKKPD--VIID--YAHKPEALEKILLSIQQIRESAK 367 Query: 367 GEGRRIAVLG 376 +G+ I ++G Sbjct: 368 QQGKIITIIG 377 >gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae P1031] gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae 70585] gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae 70585] gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae P1031] gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae INV104] gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA47901] Length = 450 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836] gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836] Length = 479 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 32/290 (11%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HI 147 L + A A + + IA+ G+ GKTTT MLT+AL + +YA G+ N H Sbjct: 102 LPRAAALASVMAGRRTIAVAGTHGKTTTTSMLTVALQHCAADPSYAIGGNLNESGSNAHD 161 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G G + + + FLT+ P ++++T++ P HL N+ Sbjct: 162 GT-------------GDLFVAEADESDKSFLTY--GPEVSIVTSVEPDHLDNYGDEASYT 206 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 A + + + G + + DD+ L + GI + ++G+S +AD ++ + Sbjct: 207 KAFEDFCDRVLPGGFLVICVDDAGARRLAGFARERGID-VRTYGESADADLRVTEITATG 265 Query: 268 E-QSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 QS++ V +G+ + VV+ G H A N L + L + L+ F G Sbjct: 266 AVQSFVPV-WRGRKLPVVNLQQAGKHNALNASAALAVGLGLGFSAADLAEGLASF---TG 321 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 G+R+ + + D SY +P + ++ Q++ GEGR IA Sbjct: 322 TGRRFEFKGQEDGVRVYD-SYAHHPTELAVDLTAARQVA--GEGRVIACF 368 >gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] Length = 495 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 86/380 (22%), Positives = 150/380 (39%), Gaps = 59/380 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S+ S + P + + A+ G G +F+ AV++GA V+ ++ V + +P Sbjct: 35 VTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVAVLSDSWGVEAAVEHGLPAL 94 Query: 87 GVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D A + AV + ++I ITG+ GKT+T ++ L + + IG+ Sbjct: 95 HHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTGLIGTVE 154 Query: 145 NHIGVPLTLAR--MPVDVDFG-----IFELGMSHLGEIRFLTHLVRPH--------IAVI 189 IG ++ P + E G++ + + +H + H + Sbjct: 155 TRIGAETIVSERTTPEATELQALFAYALEQGVTDI-VMEVSSHALTLHRAEGISFAVGGF 213 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T HL ++E +AKA++F+G + +N DD++ + L YS Sbjct: 214 TMFGLDHLDFHPTVDEYFAAKAKLFDG--RCRVEVVNADDAWAKRLVTPD-----TVTYS 266 Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVS 304 NA + + +QS+ G+ HHG G H N L+ G ++ Sbjct: 267 L-VDANATWSVDSITGSGFDQSFEVTSPHGR-----HHGSVRLPGRHNIANALLAYGCLT 320 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE--------SYNANPASMKAA 356 + V+TAI ++ CA G L+ E Y P ++ A Sbjct: 321 AVGVPVETAIAGVA------------DCAGVPGRMELVSEDNPVHGVVDYAHKPDAITA- 367 Query: 357 ISVLSQISPHGEGRRIAVLG 376 VL + P G IAV+G Sbjct: 368 --VLEALRPITSGSLIAVIG 385 >gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] Length = 495 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 29/222 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87 +DSR F AIKG DG +FI+ A+Q GA V+ TD+V ++S IP+ Sbjct: 28 LDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVSFEQNIPLIA 87 Query: 88 VDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 ++ L+ +A R S + T++ +TG+ GKTT ++L + T A +G+ Sbjct: 88 YYELSKHLSH--IADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHTSAVMGTI 145 Query: 144 NN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N I + +L + + DF E+ SH G ++ + Sbjct: 146 GNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVS-SH-GLVQHRVEALTFRAG 203 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + T ++ HL +E A AK +F L I LN DD Sbjct: 204 IFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKI-LNVDD 244 >gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC3059-06] gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC3059-06] Length = 450 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris AB-18-032] gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris AB-18-032] Length = 510 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 37/288 (12%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149 A+AA + + T+ A+ G+ GKT+T M+T+ I + +GS +H G Sbjct: 107 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVFQQAGADPSFVIGGEISEVGSGAHHGTGE 165 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + D F I+ RP ++++T I HL+ + + + + Sbjct: 166 YFVVEADESDRSFLIY-----------------RPFVSIVTNIEADHLNTYGDLANLEAT 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 AE + G I DD+ + L A A G + +Y++G+S +AD +L + + Sbjct: 209 FAEFARLTDPDGFIITCADDAGGQRLAATLRAQG-RRVYTYGESADADLRLSEMASSARG 267 Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G+S+ + G HMA N + +L + A AL+ F G + Sbjct: 268 VRYLAHIDGRSLGEFRMPVPGRHMALNSASAVLAAYLLELPLQAAEAALAAF---PGVRR 324 Query: 329 RY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 R+ R + G L+ + Y +P SM A+ L +++ GEGR + V Sbjct: 325 RFERKGVADGV--LVYDEYAYHPTSMTLALQTLREVA--GEGRLLVVF 368 >gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] Length = 491 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 96/405 (23%), Positives = 155/405 (38%), Gaps = 45/405 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I+ DSR + P F I G DGH F A + GA ++ + ++IPV Sbjct: 23 VNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELGAVAIIAEKTV-----DVAIPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 78 YVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137 Query: 145 NHIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P +L V + E+ L + R + +AV Sbjct: 138 RKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A AK+ +F L + LN DD ++ + A Sbjct: 196 FMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKIAVLNADDEESVRMQTATAA- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG ADF+ + S S ++ G ++ IG N+L + Sbjct: 255 ---HVITFGIKAAADFRASNIQITSHGSTFDLDTPGGHFKLKIKMIGNFSVYNVLAAIAT 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L +D AI + +GR + Q F ++D Y+ P + ++VL Sbjct: 312 SYALHIPLDNAISTVEAIPGVKGRFELVHAG--QDFPVIVD--YSHTPDGL---LNVLQT 364 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 IS E R V+G C G+ + +A+V Y + V+ S Sbjct: 365 ISEFAEKRVFVVVG--C-GGDRDKGKRPQMAKVAVKYATNPVFTS 406 >gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 500 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 147/386 (38%), Gaps = 63/386 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A + ++ +I ITG+ GKTTT +L L+ +G Sbjct: 85 PKIIVKDARYAMAVIASHFYSYPSNEMKLIGITGTNGKTTTSYLLEKILTDYGFQTGIMG 144 Query: 142 SYNNHIGVPLTLARMPVDV--------------------DFGIFELGMSHLGEIRFLTHL 181 NN GV + P D+ D+ + E+ L H+ Sbjct: 145 --NN--GVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYCVMEVTSQGL-------HM 193 Query: 182 VRP-----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDS 230 R IAV T + HL EE K +F L LN DD Sbjct: 194 ERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATDKKIAILNADDP 253 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 E K + A + ++G + AD Q + S+ V +E+ + +G Sbjct: 254 SVEYFKKVTSA----EVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEIEINLNLVGR 309 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L I + L + + S+ H K G+ NQ F ++D Y +P Sbjct: 310 FNVYNALAV--ITATLVEGIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD--YAHSP 365 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ +VLS IS + + I V G Sbjct: 366 DALE---NVLSTISEFSKAKIITVFG 388 >gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus agalactiae 2603V/R] gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus agalactiae A909] gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae 18RS21] gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae H36B] gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae CJB111] gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae 2603V/R] gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae A909] gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae 18RS21] gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae CJB111] gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalactiae H36B] Length = 451 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ +I ITGS GKTTT M+ L++ + G +IG P + + + D Sbjct: 106 AYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG----NIGFPASEVVQAANDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 162 DTLVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L + A TI F ++ D + KQ + +G++ Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265 Query: 281 -MEVVHHGI-GYHMAQNMLMTLGIVSI 305 M V G+ G H +N L T+ + + Sbjct: 266 IMSVDDIGVPGSHNVENALATIAVAKL 292 >gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] Length = 498 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 24/322 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + I+ DSR P F A G DG F+ AV GA ++ +L++P FG Sbjct: 18 DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDGDGFCAPALAVPGFG 77 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + LA + R + +TG+ GKTT +ML AL + + +G+ Sbjct: 78 VRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVGTLGC 137 Query: 146 HI------GVPLTLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHIAVITT 191 G+ T + + F F + +S +G + + + +A+ T Sbjct: 138 GFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVAIFTN 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 ++ HL +E A+AKA +FE E + + +N DD + L + G I Sbjct: 198 LSRDHLDYHGTMEAYAAAKARLFERPELSACV-INIDDPWGLALARRLVVEGRAVIACTL 256 Query: 252 KSKNADF-----QLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + NAD LR + + + + L +G+ E+ + + N++ G + Sbjct: 257 YAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAVAGALL 316 Query: 305 ILTADVDTAIKALSVFHPKEGR 326 D L P +GR Sbjct: 317 ARGIAFDELPPVLGRLAPPQGR 338 >gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 476 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L+ I S I + GIS DSR I F A KG +DGH +I A++ GA ++ Sbjct: 6 ILKEISYISKNIQNDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNGANTII 65 Query: 70 -VNTDMVASIGSLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEML 126 N D+ G I V D AL K++ + + SK+ +I +TG+ GKTTT ++ Sbjct: 66 YTNDDINFESG---INYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTTANLI 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 L+ + A IG+ G L MP + Sbjct: 123 AFVLNKLGSPCANIGT----DGADLINKTMPTE 151 >gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 499 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 81/359 (22%), Positives = 150/359 (41%), Gaps = 27/359 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + Q V I DSR ++ F A++G H DG D+I A+ G ++V S S Sbjct: 29 IAQCQVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRPES-ASD 87 Query: 82 SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V D A+ LA R + TI+ +TG+ GKTTT + S + A Sbjct: 88 EVVWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAAL 147 Query: 140 IGSYNNHIG---------VP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPH 185 + IG P L L R+ D VD G L M S ++ + + Sbjct: 148 FSTVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFA 207 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+ T + HL ++ +AK +F+ L +N DD ++ A Sbjct: 208 LALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTPDAYALVNADDRNGSVMVQNCAA---- 263 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++++ +AD+ + Q + S + L + +E+ +G + A N+ G+ + Sbjct: 264 HLHTYAMRSHADYMAQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARL 319 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D+D ++ + + G+ A +G+ ++D Y P +++ + +S+++ Sbjct: 320 LLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376 >gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA41317] Length = 450 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] Length = 497 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 142/375 (37%), Gaps = 33/375 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 Q V G+S+DSR F A+ G + G FI A+++GA V+ + + A L Sbjct: 23 QALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAAVLTDAEGAALARDLLD 82 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------EMLT 127 ++ + +D L+ A +IA+TG+ GKT+ E + Sbjct: 83 GAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSVASFTRQIWAELGFEAVN 142 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLV 182 + + ++ Y ++ P+TL R+ + V E L + R V Sbjct: 143 LGTTGVEGAYQVPLAHTTP--EPITLHRVLAECQAAGVTHAAMEASSHGLAQRRL--DGV 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241 + A T HL + +E AKA +F L + GT +N DD + + Sbjct: 199 QLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINIDDPRGAEMAEIARH 258 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + I G+ AD LR + + M +G+ + IG +N+L+ G Sbjct: 259 RG-QGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIGGFQGENLLLAAG 317 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AD L GR G +D Y P ++ AI L Sbjct: 318 LAIATGADPSRVFDTLPQMRTVRGR-MELAATRENGAAVFVD--YAHTPDAVGTAIRAL- 373 Query: 362 QISPHGEGRRIAVLG 376 PH GR IA++G Sbjct: 374 --RPHVMGRLIAIVG 386 >gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae WA1] gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae WA1] Length = 462 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 55/374 (14%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA RLR IAI+GS GKTTT +++ + CI NH + A Sbjct: 100 LAELMRLRYG---IAISGSHGKTTTTSLISQIMMHAGLNPVCIIG-GNHFNLKSNAACND 155 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + ++ + E S +R + P I V+T I HL + +E + A E + Sbjct: 156 LSSEYMVCEADESDGSFLR-----LSPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKV 210 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G FL ++D+ + L ++ K YS+G SK+ DF + ++ + V+ Sbjct: 211 PFYGCSFLCFEDNVVKDLSKSAN----KKYYSYGFSKDYDFYV-------DRDSIRVEAP 259 Query: 278 GKSMEVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 H+ IG H N L ++G+ L D+ + L F EG G Sbjct: 260 ITYFTAYHNSECLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTF---EGVG 316 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGD 377 +R L TL D+ Y +P +KA +S +++ PH R +L D Sbjct: 317 RRLN-KLYDKEITLFDD-YAHHPTEIKATLSSVRNAYKNRRIIAVFQPHRYSRTELLLND 374 Query: 378 MCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLF 434 +F+ D EV+ +Y + G + D + + + HV Y ++ + Sbjct: 375 ------FEYAFN-DADEVIISDIYAAGESPIPGISGEIICDVVRKQNNHVRYIPNIEDVL 427 Query: 435 LFIQSSLVDGDVVV 448 + DGD+++ Sbjct: 428 PVLDDIKKDGDIIL 441 >gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC1873-00] gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC1873-00] Length = 450 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEALIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] Length = 532 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 32/294 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+S+DSRSI P + + A+ G G F+ A GA V+ + V + +P+ Sbjct: 66 LVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTAGLPL 125 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D L VAA + + T ++ ITG+ GKTTT +L L + A +G Sbjct: 126 LVVPDPRAVLGD--VAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPA-ALVG 182 Query: 142 SYNNHIGVPLTLARM--PVDVDFGIFELGMSHLG----EIRFLTHLV--------RPHIA 187 + IG + + M P D M G + +H + R +A Sbjct: 183 TIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARYSVA 242 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T ++ HL E+ +AKA +F E+ +N DD + L A++ + + Sbjct: 243 GFTNLSQDHLDFHKTFEQYFAAKASLFT-PERCDLAVVNIDDKYGRRLAAQT----VVPL 297 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNML 297 + +++AD+ + Q SE + ++G ++E+V G +++A +L Sbjct: 298 VTVSTTRDADWTVAGTHQ-SEHGGTVIDIRGPGEALTVEIVLPG-DFNVANALL 349 >gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] Length = 485 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 148/372 (39%), Gaps = 38/372 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR++ P + FFA+ G DG FI A+ GA V V D + G +P Sbjct: 22 VTGLAADSRAVKPGDLFFALAGSKTDGARFIDAAIASGA--VAVAGDHAPARG--RVPFI 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + AL A R ATI A+TG+ GKT+ + A IG+ Sbjct: 78 ATPNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGYLSASIGT---- 133 Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187 +GV + +R P+++ + +L G++HL G ++ VR A Sbjct: 134 VGV-VAPSRAVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRVDGVRVRAA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ H+ + K +F L E G + D + + + A + Sbjct: 193 GFTNLSRDHMDYHPTVAHYLETKLRLFRDLVESDGIAVICADHDCSDTVIEAAGARNVPV 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + A +R + + V L+ G+ + +G +N L++ G+V Sbjct: 253 MRVGRRGDGARMGIRLVEAAIDGFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 DVD A AL H + RG+ R G +D Y P ++ A+ L Sbjct: 313 GTGGDVDQAFAALE--HLEGARGRIERIGERNGAQVFVD--YAHKPDALAKALQAL---R 365 Query: 365 PHGEGRRIAVLG 376 P+ + + + V G Sbjct: 366 PYAKRKLVVVFG 377 >gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. SPB78] gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. SPB78] Length = 474 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 + A+ + +PV+G + +A RLR A +A+TG+ GKTTT ML L Sbjct: 86 LFAAAEAAGVPVWG---------DVELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 136 Query: 132 SIKKTYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A +G +IGV L LA P DV EL L VRPH A Sbjct: 137 AAGHRTAAVG----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAA 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI- 247 + +AP HL + A+ K ++EG + ++ + D + EL++A G + I Sbjct: 187 VLNLAPDHLDWHGSMAAYAADKGRVYEG-NQVACVYNSADPATEELVRAADVEEGCRAIG 245 Query: 248 YSFGKSKNADF 258 ++ G + ++ Sbjct: 246 FTLGTPRPSEL 256 >gi|325519756|gb|EGC99063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. TJI49] Length = 161 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 22/162 (13%) Query: 315 KALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRI 372 + L F P +GR + R + T++D++YNANP SM+AAI VL+ Q +P R+ Sbjct: 3 QGLEAFEPVKGRLQVRRATVGGLAGATVVDDTYNANPDSMRAAIDVLAGQPAP-----RV 57 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--- 429 V+GDM E+G+ +FH ++ + ++ AL DA R Y +T Sbjct: 58 LVIGDMGEVGDEGPAFHREIGAYARERGVDALF-------ALGDA-SRDACTAYGDTARH 109 Query: 430 MDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467 + +++ L G V+VK S R+++ L + Sbjct: 110 FGDVGALVEALLASGYDAAATVLVKGSRYMKMERVVDALTNQ 151 >gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP11-BS70] gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae MLV-016] gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus pneumoniae AP200] gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP11-BS70] gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae MLV-016] gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus pneumoniae AP200] Length = 450 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGEH----GLLSGNIGYPASQVAQIASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|57237640|ref|YP_178888.1| Mur ligase family protein [Campylobacter jejuni RM1221] gi|121613032|ref|YP_001000484.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005421|ref|ZP_02271179.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|57166444|gb|AAW35223.1| Mur ligase family protein [Campylobacter jejuni RM1221] gi|87249533|gb|EAQ72493.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|315058249|gb|ADT72578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni S3] Length = 475 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 35/306 (11%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 K A+LR+ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADIN 201 Query: 155 R-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 + D I E G G+I +T ++PHI+++ I HL F +E I S K E Sbjct: 202 NNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNVHLEYFKSVENILSTKLEA 261 Query: 214 FEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 LEK L + + G K I + D +L E Sbjct: 262 LNSKRLEKA-------------FLHSSTQKEGDKLISLY------DEKLSLIHSSLEGLE 302 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +V ++ KS + +G AQN+ + + L ++ K + + E R + Sbjct: 303 FKVDIENKSYDFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ--- 359 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 L++ +ID+ +N N M + ++ +GR++ V + E+ E +I Sbjct: 360 -VLSREPKFIIDDGFNGNFKGMSTSY----KLCKSYKGRKVLVSPGIVEVSEEE---NIK 411 Query: 392 LAEVLS 397 LA++++ Sbjct: 412 LAKIIN 417 >gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] Length = 506 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 87/396 (21%), Positives = 162/396 (40%), Gaps = 42/396 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSLSIPV 85 G++ DSR + FFA+ G H+DG +FI A+++G+ ++V D+ ++ + I Sbjct: 33 GLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYDPNVTYIKIDS 92 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + + + ++ II +TG+ GK++ + L S+ I + Sbjct: 93 CNIKKFMSNFAHIFYNEPSKN-LKIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFF 151 Query: 146 HIG------------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR--P 184 G + L L++M +V++ I E SH +IR + L+ Sbjct: 152 EDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVE-STSHGLDIR-TSRLIDIAY 209 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL ++ +AK +F + G +N DD F Sbjct: 210 FVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIINMDDKNFSTFLNT----- 264 Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I Y++ ++KNADF + K + + E + + + G +N++ L + Sbjct: 265 INRAYTYSLENKNADFFVSKINEQMGFTEFEFYHKNVKYDARVNLTGSFNVENVMAALIV 324 Query: 303 VS-ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 VS ++ DV I L GR + Q F +ID Y P + + Sbjct: 325 VSQVMNVDVSELIDKLVNIEGLFGRMQ--GVDFGQDFSLIID--YAHTPGAFLKIFPIFK 380 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++S + R I+V G E L + ++A+ S Sbjct: 381 RLS---KNRLISVFGSAGERDVLKRKLQGEIADRYS 413 >gi|65317674|ref|ZP_00390633.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 247 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G R T+I+++YNA+P +M+AA +++ + G ++I VLGDM E+G+ Sbjct: 108 GMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD--GFSKKIVVLGDMLELGDQEV 165 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPRSIHVHYSETMDGLFLFIQSSLV 442 FH ++ +++ IS+V+ G + + P V + + L +Q+ + Sbjct: 166 QFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNE-RVKAYDNKEELVKELQAVVD 224 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 DVV+VK+S +I +L Sbjct: 225 TKDVVLVKASRGMKLEEVITML 246 >gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus pneumoniae TCH8431/19A] gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae Taiwan19F-14] gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus pneumoniae TCH8431/19A] gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA04375] gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA41301] gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA47368] Length = 450 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] Length = 504 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 137/348 (39%), Gaps = 27/348 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + IS DSR ++ FFA KG DGH +I A++K A +V +++ S ++ Sbjct: 34 ITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRARAIVC-SEIPRLYVSQAVTFL 92 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D L K A +++ +TG+ GKTTT + L IG+ Sbjct: 93 KVRDPRRTLGKAASLYYGNPSQHLSLVGVTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVC 152 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 Y+ + P D M G R V H + + Sbjct: 153 YDTTESCIPSSRTCPEGSDLQYMLYRMVQAG-CRAAVVEVSSHALDQGRIEGSNFRVGIY 211 Query: 190 TTIAPAHLSNFSGIEEIASAK----AEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGI 244 T HL +EE +K A I G E G + LN DD + LL K + I Sbjct: 212 TNFTQDHLDYHLTMEEYRRSKENFIAYIRGGKEGDGGVVLNLDDPQWRLLAEKLRKKMRI 271 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T+ S G+ K AD + + ++ GK +V +GY N L++LG V Sbjct: 272 VTVSSEGR-KEADLKAGSISCDRFSTKFVLEWAGKVFKVKSSLLGYFNVDNALLSLGGVL 330 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +L ++ +I L F GR ++Y G +ID +++ + S Sbjct: 331 LLGIPLEQSISFLEFFPGVPGRMEKYYS--KDGLLVVIDYAHSEDALS 376 >gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] Length = 506 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 22/231 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ A GA V+ + + +PV Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPSGAERAAATGLPVL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 ++ + +LA R + I ITG+ GKTTT ++ L + K T IG+ Sbjct: 95 VAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTTTAYLVEGGLRTAKST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H IAV Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIAVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKS 239 T ++P H+ SG+E+ AKA++F + G + N DD + L A++ Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGVV--NTDDEYGRRLAAQA 261 >gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] Length = 488 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila psittaci RD1] gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila psittaci 6BC] Length = 810 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 28/273 (10%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGV 149 L L++ + A L + T I ++GS GKTT ++T + KK +YA IG N+ Sbjct: 88 LPILHRSELLAFLMQEQTSILVSGSHGKTTVSSLITAIFQTAKKDPSYA-IGGLNS---- 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIAS 208 L+L ++ I E S +L P +AV+T + HLSNF G E++A Sbjct: 143 -LSLNGYSGSSEYFIAEADESDGSLKHYL-----PKVAVVTNLDNEHLSNFEGSKEKLAL 196 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 E +E F N D + LK + S+G S++ + ++ + Q Sbjct: 197 TIEEFTRKVEDPRLCFYNGD---CQELKGRISGT------SYGFSQDCNLRIHSYYQDGW 247 Query: 269 QSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +S + GK +++ + IG H N + +GI L D ++ +AL F + R Sbjct: 248 RSLFSLSFLGKDYLDIDLNLIGKHNIANAAVAMGIALTLGIDEESIREALKNFSGIQRRM 307 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +R + FF E Y +P+ + + L Sbjct: 308 ERKNVSEKFLFF----EDYAHHPSEISCTLRGL 336 >gi|167740315|ref|ZP_02413089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 14] Length = 189 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 8/84 (9%) Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368 AIKA L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P Sbjct: 27 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 83 Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392 R+ V+G+M E+G+ +FH ++ Sbjct: 84 --RVLVIGEMGEVGDEGPAFHREI 105 >gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP14-BS69] gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae CGSP14] gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae CCRI 1974] gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae CCRI 1974M2] gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP14-BS69] gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae CGSP14] Length = 450 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRDVDNQTIKETLSAF 307 >gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces bingchenggensis BCW-1] Length = 544 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 99/412 (24%), Positives = 156/412 (37%), Gaps = 47/412 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + V GI+ DSR++ P + + A+ G G DF A GA V+ + + + Sbjct: 58 EAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAADLGAVAVLTDPGGADRAAATGL 117 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKT----- 136 PV V++ G + LA + I ITG+ GKTTT ++ L + Sbjct: 118 PVLVVENPRGRMGALAATIYGEPGRDLLQIGITGTSGKTTTAYLVEGGLKAAAAKGDGSL 177 Query: 137 YACIGSYNNHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFL 178 IG+ + IG + P D G+ L M SH LG + Sbjct: 178 TGLIGTVESRIGDERIKSERTTPEATDLQALFAVMRERGVGSLAMEVSSHALVLGRVDGC 237 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +AV T ++P H+ S +E+ AKA++F + +N DD + + L Sbjct: 238 VF----DVAVFTNLSPEHMEFHSDMEDYFQAKAQLFTKARSRAAV-INLDDEYGKRLVDL 292 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S + +F + D R E + G + E V A N+ Sbjct: 293 SEV----PVTTFSAEGHPDAHWRAADVTVGPLGSEFTILGPNGESVTAAAPLPGAFNVAN 348 Query: 299 TLGIVSILTA---DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 TL V L D TA ++ GR +R Q + ++D ++ + A Sbjct: 349 TLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDA--GQPYLAVVDYAHKTD-----A 401 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 SVL + EGR AVLG C G+ Q + ++ Y + V S Sbjct: 402 VESVLRALRKVTEGRLHAVLG--C-GGDRDQQKRGPMGAAVARYADTAVLTS 450 >gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium animalis subsp. lactis V9] Length = 481 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 25/270 (9%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R S A I ITG+ GKT+T EM + L + T +G +IG L+ A + D Sbjct: 101 RTGSPAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVG----NIGNALSAAALDPVNDV 156 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 EL L T+ + A IT IA HL G+ A+ K+++F+G ++ Sbjct: 157 LCVELSSFQL----HFTYSLELDCAAITNIAADHLDWHGGMANYATDKSKVFDGAKR--V 210 Query: 223 IFLNYDDSFF-ELLKAKSHALGIKTI-YSFGKSKNADFQLRK-W-----KQCSEQSWMEV 274 I N D+ EL + A G + I ++ G+ + ++ W C Q+ E Sbjct: 211 IAYNAQDARVSELARTAQTAEGCEHIGFTLGEPVSGQIGIKDGWIVDMSGLCGGQT-GEA 269 Query: 275 QLQGKSMEVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + H G Y H+ + L L +V L ADV TA+ AL F P R + Sbjct: 270 YALAPIADFTHLAEPDGTIYPHLLADALTALILVVGLGADVATALNALKRFAPGGHRIQT 329 Query: 330 Y-RCALNQGFFTLIDESYNANPASMKAAIS 358 A +G +D+S N + +A+++ Sbjct: 330 VAELASPEGTIRFVDDSKATNAHAARASLN 359 >gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM 7084] gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM 7084] Length = 471 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + L+ P A + + P HL +E A+AK IF+ L ++ +D + + Sbjct: 179 SRLLHPRCAALLNVTPDHLEWHGSLEGYAAAKERIFQNLSGDDLAVVSQEDGYCRDAIGR 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQ 294 A G++T++ + + + W+ V+L G V G H AQ Sbjct: 239 LEARGVRTLHVGVREEPVSGE----AAFVRDGWLTVRLDGGERRVAPMANLPLRGEHNAQ 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 NML + L A V+ +AL FHP E R Sbjct: 295 NMLAASSMALFLGASVEAVRRALEGFHPIEHR 326 >gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te ligase mure [Rhodococcus equi 103S] gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 501 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 151/386 (39%), Gaps = 40/386 (10%) Query: 16 GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 GH + P + + G+ DSR + P + + A+ G + G DF A +GA V + + Sbjct: 26 GHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEASARGA--VAMLS 83 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL 130 D + I +P VDD AL LA A + + +TG+ GKT+T +L AL Sbjct: 84 DRPSDI----VPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNGKTSTVYLLEAAL 139 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGM---SH-LGE 174 + +T G G R + V+ G+ + M SH L E Sbjct: 140 VAAGLRTGVVTGVTVRGPGTARPATRTTPEACELQQSFVEFVEEGVDAVAMEVSSHGLAE 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 R R + V T +A HL +E +AKA +F G + + DD + Sbjct: 200 HRIDGS--RFDVGVFTNLARDHLDYHPDMEAYYTAKARLF-GRDLCERAAVCIDDDYGRR 256 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L + + + + + AD + S + +G+ + V +G H Sbjct: 257 LAGE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVRLRVLGGHQVD 313 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + L +S+ D+ A+ + GR + R + Q F L+D Y N A Sbjct: 314 NAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE--RVDVGQPFLALVD--YVHNTAGQH 369 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE 380 L ++P GR + VLG E Sbjct: 370 RLFPYLRSVTP---GRIVVVLGATGE 392 >gi|228993421|ref|ZP_04153337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228999465|ref|ZP_04159044.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17] gi|229007021|ref|ZP_04164649.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4] gi|228754260|gb|EEM03677.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4] gi|228760410|gb|EEM09377.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17] gi|228766489|gb|EEM15132.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 436 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 146/371 (39%), Gaps = 67/371 (18%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 HD+ +QG + F ++++ R SI P F + V++G Sbjct: 22 HDMKHTVQGSDF---EKRFFTQVALEKRGISILP----------------FDKNNVKEGQ 62 Query: 66 GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ N + + + L+IPV LG L SK T +A+TG+ GKT Sbjct: 63 VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------NLMSKYTSVAVTGAHGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178 +T +L + T IG H GV + + +FE E R FL Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P A++T I H F+ I ++ SA E+ L+ I DD + ++AK Sbjct: 160 SYY--PDYAIMTNIDFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297 + Y FG ++ DFQ R ++ ++ + +V ++ E G G H N L Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNAL 269 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + DV+ L+ F G KR G +ID+ Y +P + A I Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF----GGVKRRFNEKPMGEQVIIDD-YAHHPTEINATI 324 Query: 358 SVLSQISPHGE 368 Q P E Sbjct: 325 EAARQKHPERE 335 >gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] Length = 489 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 25/225 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR + + F A+KG +D F+ A+ GA V++ TD+ S+ + Sbjct: 18 VKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQWQNN 77 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV + L+ LA K T++ +TG+ GKTT ++L + + A + Sbjct: 78 VPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKAAVM 137 Query: 141 GSYNN---------------HIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N + V LA + DF E+ L + R ++ Sbjct: 138 GTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYR--VEALKF 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A+ T ++ HL +E+ A AK F L I LN DD Sbjct: 196 KSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQI-LNADD 239 >gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus viridans ATCC 11563] gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus viridans ATCC 11563] Length = 462 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 123/305 (40%), Gaps = 50/305 (16%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK----EML 126 N MV + +PV+ + +A ++ + ATII ITGS GKTTT EML Sbjct: 89 NNPMVVRAQEIGLPVY---------TDIELADKM-TDATIIGITGSNGKTTTTSLVGEML 138 Query: 127 TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 A S ++Y +IG+P L +A D I EL L T +PH Sbjct: 139 GKAASLAGESYVG-----GNIGIPSLDIASKAEADDRLILELSSFQL----MGTDAFQPH 189 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFE-LLKAKSHAL 242 IA IT I AHL ++ SAK +I + LN D D F + KA Sbjct: 190 IAAITNIYAAHLDYHGSMDGYISAKWQITANQTTDDFLILNADQMDVFGDRTTKATVVPF 249 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 TI G + D Q W E+ L K + G+H +NML+ + I Sbjct: 250 SATTIQPDGAWFDQDSQNFIWHD-------EIVLNRKDFFLP----GHHNLENMLVAVAI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNANPASMK-AAISV 359 +L + +S FH G ++R F ID YN + A+ A+I+ Sbjct: 299 GKLLGISNEEIKNGVSTFH-----GVKHRLQ----FVAEIDGRRFYNDSKATNNDASITA 349 Query: 360 LSQIS 364 L S Sbjct: 350 LDSFS 354 >gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC1087-00] gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae CDC1087-00] Length = 450 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A++ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 NTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 10403S] Length = 491 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 155/394 (39%), Gaps = 42/394 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL +EE A+AK+ +F L + Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD+ ++ + A I +FG + ADFQ K S S ++ + Sbjct: 236 AVLNADDAESVRMQKATAA----HIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFT 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AIK + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P + ++VL I + R V+G Sbjct: 350 D--YAHTPDGL---LNVLETIDEFAKKRVFVVVG 378 >gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] Length = 488 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum WM1] gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum WM1] Length = 459 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 43/380 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141 +P+ ++LG + +++ IA++G+ GKTTT M+T I L++ +G Sbjct: 94 LPILSRAELLGQM--------MKNYENSIAVSGTHGKTTTTSMITEILLAAEADPTISVG 145 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 N IG + + G+F FL+ P + VI I HL F Sbjct: 146 GILNSIGGNIRVGGP------GLFVTEACEYTN-SFLSFF--PTMEVILNIEADHLDFFK 196 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 I++I + E L G++ +N D E + + L + I ++GK + +Q Sbjct: 197 DIKDIRHSFRLFAEKLPPNGSLVINND---IESREEITEGLPCQVI-TYGKKPGSRYQAE 252 Query: 262 --KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ + + ++ +++L G ++ V G+ G H N L + + L + D K L Sbjct: 253 AIRFDEYARATY-DLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLK 311 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEG 369 F G +R+ T+ID+ Y +P ++A + PH Sbjct: 312 RF---TGTNRRFEKKGELSGVTIIDD-YAHHPQEIRATLETAKHYPHNKLWVAFQPHTYT 367 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R A L + + LS + + LA++ + + +S + + R + HY + Sbjct: 368 RTKAFLEEFADA--LSLADEVILADIYAARETDDLGISSGDI--AERIGKRGVKAHYFSS 423 Query: 430 MDGLFLFIQSSLVDGDVVVV 449 D + FI + + GD+++ Sbjct: 424 FDEIETFILENCIHGDLLIT 443 >gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 3_1_33] gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 3_1_33] Length = 432 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 23/255 (9%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFG 163 R K +IAITG+ GK+TT T +S + +Y +IG L+ + D+DF Sbjct: 88 RMKTKVIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFI 143 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 EL L I +P+I++I + P H+ + +E K I + + Sbjct: 144 SLELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDFYF 199 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD E ++ + K I S K K AD + K C + + + + S++ Sbjct: 200 IENIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSI-IDVDKLSLK- 253 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H +N L + IL D + + L + P E R + + N G I+ Sbjct: 254 -----GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FNYGKLKFIN 305 Query: 344 ESYNANPASMKAAIS 358 +S N S K AI Sbjct: 306 DSKATNVDSTKFAIE 320 >gi|167920622|ref|ZP_02507713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei BCC215] Length = 166 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 8/84 (9%) Query: 312 TAIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368 AIKA L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P Sbjct: 4 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 60 Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392 R+ V+G+M E+G+ +FH ++ Sbjct: 61 --RVLVIGEMGEVGDEGPAFHREI 82 >gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA] gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA] Length = 483 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A + Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLSFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + DGD Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGD 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] Length = 483 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 22/251 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR + P F A+ G G DFI A+ GA +++ + + A +PV Sbjct: 21 VRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAGASVILTDEPVEA-----PVPVI 75 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + L ++A R I+AITG+ GK++T E L + AC+G+ Sbjct: 76 AVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVEFLRQIWAGAGIEAACLGTLGVT 135 Query: 147 IG--VPLTLARMPVDVDF----------GIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192 G V +T P V G+ LGM S G + VR + T + Sbjct: 136 RGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEASSHGLKQHRMDGVRLQVGAFTNL 195 Query: 193 APAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 HL + ++K ++F E L G +N D + + A + G++ + + G Sbjct: 196 TQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDSEWGGKMAASARERGLE-VLTMG 254 Query: 252 KSKNADFQLRK 262 + +D +R+ Sbjct: 255 -WRGSDLAIRE 264 >gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC BAA-613] gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC BAA-613] Length = 472 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 45/381 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P+ ++LG L +R+ IAI+G+ GKTTT MLT L + G Sbjct: 107 LPMLSRAELLGEL--------MRNYKEAIAISGTHGKTTTTSMLTDILLA--------GD 150 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200 + I V L + ++ G +L ++ E FL+ P + VI + HL F Sbjct: 151 LDPTISVGGILKDIGGNIRVGGPDLFVTEACEYTNSFLSFY--PTMEVILNVEEDHLDFF 208 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 IE+I + E L G + +N S E ++ + L + + +FGK ++ + Sbjct: 209 KDIEDIRHSFRLFAEKLPAKGLLVVN---SGIEKVEEITRGLRCRVV-TFGKDLSSTYTA 264 Query: 261 RK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 R + + S+ ++ +QG+++ + G+ G H N L + I L D + L Sbjct: 265 RNITYDGFARPSY-DLVVQGETVTRITLGVTGEHNVYNSLAAIAIALELGVGFDAIMSGL 323 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368 F G +R+ T+ID+ Y +P +KA ++ PH Sbjct: 324 GRF---TGTDRRFEKKGEVAGVTVIDD-YAHHPQEIKATLAAARNYPHRKLWCVFQPHTY 379 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 R A L E LS + + LA++ + + +S V + L HY Sbjct: 380 TRTRAFLDQFAEA--LSAADEVVLADIYAARETDTLGVSSRDVADRIEKL--GTKAHYIP 435 Query: 429 TMDGLFLFIQSSLVDGDVVVV 449 + D + FI + ++GD+++ Sbjct: 436 SFDEIETFILENCMNGDLLIT 456 >gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 462 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 153/383 (39%), Gaps = 41/383 (10%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPV 158 + A +++ +AI+G+ GKT+T M++ + ++ ++ +G L + Sbjct: 104 LGALMKNYKISMAISGTHGKTSTTSMVSEIIRNLPERPTILLGG---------KLDDING 154 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 +V G E+ ++ E + P AVI I HL F +E I + + L+ Sbjct: 155 NVLVGNREIMLTEACEYKANVLKYFPTTAVILNIDEDHLDYFDNMEHIVNTFKGYADNLK 214 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 T+ LN DD + L+ + + T+ +FG +AD+ + K C E + E L Sbjct: 215 PGSTLILNIDDPYVRELQNRDNT----TVVTFGVENDADYTAKNIKFC-EDGYPEYDLYY 269 Query: 279 KSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 K +V+ +G H +N L + AI + H +G +R Sbjct: 270 KGSLIGKVILSVLGIHNIKNSLAAIACAHENNISFKDAIDGI---HSYKGVHRRLEFKGM 326 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQ 386 G + D+ Y +P + A++ + + PH R +L S+ Sbjct: 327 FGGAKVFDD-YAHHPTEILASLHAIKRGCERNLYCIFQPHTFTRTKILL------DSFSK 379 Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444 SF D + +Y H L DA+ ++ Y ET + F++ +L G Sbjct: 380 SFSEADYTIITDIYAAREKDYGDIHSKTLVDAINQNKDKALYIETFRDIVKFLKDNLRPG 439 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 D VV + Y++ +LLEE Sbjct: 440 DTVVTMGAGDV--YKIGEMLLEE 460 >gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga thiooxidans DMS010] gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga thiooxydans DMS010] Length = 413 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDF 162 ++A I+AITGS GK+T +L + KT G ++G P L P DF Sbjct: 72 AEAPIVAITGSNGKSTVTTLLALMAQLSGKTVKAGG----NLGTPALDLLEGETP---DF 124 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L +R L AV+ ++P H+ + + + AK +IF G G Sbjct: 125 YILELSSFQLETVRSLNAFA----AVVLNVSPDHMDRYDSVSDYQQAKQKIFNG---DGV 177 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG--KSKNADFQLRKW 263 + LN +D F + ++ + + FG KS+ DF L ++ Sbjct: 178 MVLNTEDPFVQEMRIEG-----RNHIGFGLHKSEGVDFGLLQY 215 >gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus YK9] gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus YK9] Length = 444 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/333 (23%), Positives = 147/333 (44%), Gaps = 46/333 (13%) Query: 56 FILHAVQ--KGAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + KGA LVV +T D V + L+IPV L++ + +RL + Sbjct: 37 FIGHEAEHVKGADLVVYSTALSKDNVERKAAEELNIPV---------LHRAQMLSRLMNA 87 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +A+ G+ GKTTT M+ + + + K TY IG ++G + G + Sbjct: 88 GKGVAVAGAHGKTTTSSMIALVMETCKIDPTY-IIGGEIVNVGTNAKAGK-------GEY 139 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL + P IA++T I P HL N+ G ++ A + ++ G Sbjct: 140 VVAEADESDGSFLQY--HPTIAIVTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPDGKAI 197 Query: 225 LNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + DD+ + L + AL I ++G + A+++ + + + G+++ Sbjct: 198 VCIDDTNLQEMLPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGETLG 257 Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V + G H N + T I++ L A + ++ +A+ +F G +R+ + Sbjct: 258 NVELSVPGRHNVYNAMAT--IITCLEAGLSFESVAEAIRLFR---GAKRRFHVLGEKNDI 312 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 +ID+ Y +P ++A IS + G+RI Sbjct: 313 LVIDD-YAHHPTEIQATIS-----AAKATGKRI 339 >gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM 10507] gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM 10507] Length = 459 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/365 (23%), Positives = 154/365 (42%), Gaps = 47/365 (12%) Query: 104 LRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPV---D 159 +R+ T IA+ G+ GKTTT M++ I L S +G G+ +PV + Sbjct: 107 MRNYDTPIAVAGTHGKTTTTSMISHILLESDCDPTISVG------GI------LPVIGGN 154 Query: 160 VDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + G E ++ E FL+ P I++I I HL F IE+I + E L Sbjct: 155 IRVGNSETFVTEACEYTNSFLSFF--PKISLILNIDADHLDFFKDIEDIRHSFRLFAEKL 212 Query: 218 EKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 GT+ +N D D + E+++ I ++G + NAD+ + Q +E + Sbjct: 213 PADGTLIINSDTDKYTEIIRDLPCE-----IITYGLNSNADYTAQNI-QYNEYGYATFDC 266 Query: 277 QGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + + + + G H N L TL + L + + L F +G +R++ Sbjct: 267 VKDGVNLGTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHF---QGTDRRFQYK 323 Query: 334 LNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGEL 384 G T+ID+ Y +P +KA + S+ PH R A+L + L Sbjct: 324 GKVGEVTVIDD-YAHHPTEIKATLTAAKNYPHKSLWCVFQPHTYTRTKALLPEFARA--L 380 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + + H+ LA++ + ++ +S + K L HY T D + ++ + + G Sbjct: 381 TFADHVVLADIYAARETDNLGISSRDL--QKQILELGTDCHYFSTFDEIENYLLENCIPG 438 Query: 445 DVVVV 449 D+++ Sbjct: 439 DLLIT 443 >gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Bacillus sp. m3-13] Length = 496 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 27/275 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR + F IKG DGH +I A++KGA ++VV DM + I Sbjct: 23 VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVVQ-DMPEQLVE-GICYV 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V D AL +LA A +K I+ +TG+ GKTT ++ + G+ Sbjct: 81 HVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLSGTIE 140 Query: 144 ----------NNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL--VRPHIAVIT 190 N LT+ RM D V+ G+ ++ M L L V V T Sbjct: 141 IDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLAGVEFQNGVFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS----FFELLKAKSHAL 242 + HL +E +AK +F + + K LN DD+ + ++ A+ Sbjct: 201 NLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQMTGARIITY 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 GIK F K++ F K E ++ E +L+ Sbjct: 261 GIKNEADF-KAREIQFFENKTSFVLETNFGEFELE 294 >gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 508 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/367 (20%), Positives = 134/367 (36%), Gaps = 42/367 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ DSR + P F ++G DGH + A GA ++V+ + S+ L +P Sbjct: 34 VRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDRPVETSLPQLCVP-- 91 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V LG L L R+ ++ +TGS GKTTT ++ L + +G+ Sbjct: 92 SVRAQLGPLGALLAGDPARALG-LVGVTGSNGKTTTSALVRGVLEAAGTCTGVVGTLGAQ 150 Query: 147 IG-----VPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LT P V+ L M + + F Sbjct: 151 VAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMDGLAF-------E 203 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV T HL + +E+ ++KA +FE +T + DD + L ++ Sbjct: 204 VAVFTGFEEDHLDHHGTVEQYWASKARLFE-PGRTAAGVVVTDDPWGRRLADQAAV---- 258 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G +AD ++ W+ + + + + V +G N+ + Sbjct: 259 RVTRVGSGADADVRVLGWRTGAAGTEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWATGRV 318 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D L+ P GR L ++ Y P ++ AA+ + ++ Sbjct: 319 LGVPPDRIAAGLAAVAPPRGR----NTVLGGSGRPVVVVDYAHTPRALAAAVDTVRDLT- 373 Query: 366 HGEGRRI 372 G G R+ Sbjct: 374 -GPGGRV 379 >gi|167817533|ref|ZP_02449213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 91] Length = 162 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 8/83 (9%) Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEG 369 AIKA L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P Sbjct: 1 AIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP---- 56 Query: 370 RRIAVLGDMCEMGELSQSFHIDL 392 R+ V+G+M E+G+ +FH ++ Sbjct: 57 -RVLVIGEMGEVGDEGPAFHREI 78 >gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp. RED65] gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp. RED65] Length = 446 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 37/277 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + A IIAITGS K+T +T + + K + ++G P L + D+D + Sbjct: 108 ANAPIIAITGSNAKST----VTTLVGEMAKQCGLKAAVGGNLGTP-ALELLNSDIDVYVM 162 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T + +A + I+P HL + E K +IF G EK + Sbjct: 163 ELSSFQLEA----TEHLNAKVATVLNISPDHLDRYDSYEGYYQTKYKIFNGCEKA---VI 215 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD+ A+ L F K ADF L + + Q W ++ ++G ++ V Sbjct: 216 NLDDNL-----AQPKTLNCPEQIGFSIDGKGADFVLDR----TAQPW-QLIVEGDALLSV 265 Query: 285 HHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G H N L L + D+D +KAL F G +RC + + Sbjct: 266 DQLKIKGLHNYSNALAALALGHGFGLDMDGMLKALKSFP-----GLDHRCQ----WIKQV 316 Query: 343 DES--YNANPAS-MKAAISVLSQISPHGEGRRIAVLG 376 DE YN + + + A + L + P R + +LG Sbjct: 317 DEVDFYNDSKGTNVGATEAALKGLGPEYAKRIVLMLG 353 >gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter carbinolicus DSM 2380] gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter carbinolicus DSM 2380] Length = 450 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 31/199 (15%) Query: 42 AFFAIKGPHYD--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--- 96 A A G +D GHD L A GA L+ ++ + L++P V GAL Sbjct: 47 AELADHGLRFDCGGHDAALLA---GADLIAISPGI-----PLTVPA-----VAGALQAGV 93 Query: 97 ----KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 ++ +AAR S A ++AITG+ GK+TT T + I + + ++G PL Sbjct: 94 PVQGEIEIAARELS-APMVAITGTNGKSTT----TCLMGEIMRCWGRRAFVGGNLGTPLI 148 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A D D+ + E+ L I RP ++ + HL ++G+ E +AK Sbjct: 149 EATRSTDWDWIVAEISSFQLEAI----DTFRPRYGMLLNLTADHLDRYAGMGEYVAAKLR 204 Query: 213 IFEGLEKTGTIFLNYDDSF 231 +FE + +N DD+ Sbjct: 205 LFENMTAEDVAVVNADDAL 223 >gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus porcinus str. Jelinkova 176] Length = 452 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160 A L S+A IIAITGS GKTTT M+ L+ ++ G +IG P + + + Sbjct: 106 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLAG----NIGYPASEVALKAEAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IA+IT + P HL +EE +AK I + + + Sbjct: 162 DRLVMELSSFQLMGVKAF----HPQIALITNLMPTHLDYHGSLEEYVAAKWNIQQRMTEE 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN D L +K+ A Sbjct: 218 DYVILNADQELTSTLASKTKA 238 >gi|283954368|ref|ZP_06371889.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] gi|283794167|gb|EFC32915.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] Length = 475 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 97 KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153 K A+L++ II IT S GKT+ K L L K+Y S N +G+ + Sbjct: 142 KKQAKAKLKTNQNLKIILITASFGKTSIKNFLYELLKDNFKSYKTPRSVNTLLGIVADIN 201 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + D I E G G+I +T + PHI+++ I AHL F +E I S K E Sbjct: 202 VNLTPDTQIYIAEAGARLKGDIDEITRFLEPHISIVGEIGNAHLEYFKSVENICSTKLE 260 >gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D] gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D] Length = 483 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A + Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLSFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + DGD Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGD 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus mutans UA159] gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus mutans UA159] Length = 451 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DV 160 A L S+A II ITGS GKTTT M+ L+ ++ G +IG P + PV + Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSG----NIGFPASEVAQPVTEK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PH+AVIT + P H+ E AK I + + K Sbjct: 162 DILVMELSSFQL----MGTESFHPHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTKE 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L ++ A Sbjct: 218 DFLVLNFNQDLAKDLANQTQA 238 >gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685] gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685] Length = 469 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIESAGAQMKFTVHVQMKGHEQEPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVV 447 Query: 448 V 448 + Sbjct: 448 L 448 >gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] Length = 496 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 97/401 (24%), Positives = 163/401 (40%), Gaps = 53/401 (13%) Query: 6 TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D++ I+G ++ P+ + ++IDSR+ F + G H DGH +I A G Sbjct: 4 TLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTT 121 A V+V D+ G + I V + + L A ++R +I ITG+ GKTT Sbjct: 64 AEAVLVEKDVPPVPGLVMIRVKSTQETMTELAPWFYDYPAQKMR----MIGITGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFGIF 165 T +L L++ IG+ N IG + TL RM D+ + Sbjct: 120 TTNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVM 179 Query: 166 E-----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EG 216 E L ++ + I + T A +T I HL +E AKA +F EG Sbjct: 180 EVSSHALALNRVAGIEYDT-------AALTNITQDHLDFHKTMENYREAKALLFTHLHEG 232 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 +K T N DD+ L+ + +KT + ++GK++ D ++ ++ + + Sbjct: 233 RKKGKTAIFNMDDASSPLIMNR-----VKTKVMTYGKARTNDVYPIRFHVGAKHMELSLH 287 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +M++ H G N++ + D ++ L F GR + Sbjct: 288 TPEGNMDLRLHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAG-- 345 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Q F ++D Y P + + QI+ +GR AV G Sbjct: 346 QPFTVIVD--YAHTPDGLDNVLRTARQIT---KGRLWAVFG 381 >gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria cinerea ATCC 14685] gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria cinerea ATCC 14685] Length = 445 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD+F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 263 WKQCSEQ------SWMEVQLQG 278 C +Q + ++ LQG Sbjct: 252 ETGCLKQGDEDLIATQDIPLQG 273 >gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP18-BS74] gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae 670-6B] gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP18-BS74] gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae 670-6B] gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae GA17545] Length = 450 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994] Length = 480 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167 TI+ +TGS GKT+ K + L YA S N G+ + +P + I E Sbjct: 160 TIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIRDVNESLPENTQVYICEA 219 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 G +G+I + L+ P I V+ + P HL F +E I K EI Sbjct: 220 GAREVGDIYAIAQLLHPQIVVVGKVGPQHLEYFKTLERIQRTKLEI 265 >gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187] gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187] Length = 484 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 104/418 (24%), Positives = 177/418 (42%), Gaps = 56/418 (13%) Query: 64 GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VVV+T + V + L IPV ++L L R R IAI G+ Sbjct: 78 GASVVVVSTAIHGDNPEVMAARELRIPVVRRAEMLAEL------MRYRHG---IAIAGTH 128 Query: 118 GKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTTT ++ A + T+ IG N G T AR+ + + + + Sbjct: 129 GKTTTTSLIASVYAQAGADPTF-VIGGLLNSAG---TNARLGTSR----YLIAEADESDA 180 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 FL HL +P +A++T I H+ + G ++ + E L G + DD Sbjct: 181 SFL-HL-QPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGLAVVCIDDPVIRE 238 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293 L + +G TI ++G S++AD Q++++ Q QS ++LQ S + + G H A Sbjct: 239 LLPE---IGRATI-TYGYSEDADVQVQEFVQEGSQSQFRLRLQDGSFLPLRLNLPGRHNA 294 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNAN 349 N T+ + D + AL+ F G G+R++ G L+D+ Y + Sbjct: 295 LNAAATVAVALEDHIPTDAIVDALAQF---AGVGRRFQQYGEFDTGAGKVLLVDD-YGHH 350 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406 P ++A ++ P RR+ VL ++ + D AEVL+ ++ V+ Sbjct: 351 PTEVRATLAATRAAWPE---RRL-VLVFQPHRYTRTRDLYDDFAEVLAKVDVLIMLDVYA 406 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKSSNSCG 456 +G + D + T+D +F+ + L DGDVV+ + + + G Sbjct: 407 AGEDPIPGADGRSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVLTQGAGNVG 464 >gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] Length = 512 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 150/376 (39%), Gaps = 39/376 (10%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G V G++ DSR + P AF A+ G DG +F+ A+++GA LVV ++ + P Sbjct: 42 GRVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVPEA------P 95 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC--- 139 V V D AL LA A + + +TG+ GKTTT L L+ C Sbjct: 96 VAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTCYALHAVLAGAFGEERCGLM 155 Query: 140 -----IGSYNNHIGVPLTLARMPVDVDF-GIFELGM--------SHLGEIRFLTHLVRPH 185 + V T V G+ E G+ SH +R + +R Sbjct: 156 TTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEG-IRFA 214 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV T ++ HL +EE K +F L G N DD++ L + ++ Sbjct: 215 GAVFTNLSRDHLDLHGTMEEYYRTKRRLF--LWARGPKLSNADDAWGRRLAGE-----VE 267 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG + AD+++ + + ++ +++ + G + QN + Sbjct: 268 GVRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPLFGDYNVQNAAGAAALALE 327 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T +AL GR +R GF ++D Y ++A + V +++ Sbjct: 328 LGVPGETVARALRGMPQVPGRFERV---GGPGFEVIVD--YAHTDVGLEAVLRVAREVAR 382 Query: 366 HGE-GRRIAVLGDMCE 380 G GR I V G E Sbjct: 383 RGRPGRVICVFGAAGE 398 >gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum WAL-14163] gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum WAL-14163] Length = 459 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 160/382 (41%), Gaps = 47/382 (12%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIG 141 IP+ ++LG + +++ IAI G+ GKTTT M+T I + + +G Sbjct: 94 IPMMSRAELLGQM--------MKNYREAIAIAGTHGKTTTTSMVTEIFMEADNNPTISVG 145 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 N IG ++ G E ++ E FL+ P +AVI I HL Sbjct: 146 GILNSIGG---------NIRVGGPEFFVTEACEYTNSFLSFY--PTMAVILNIEEDHLDF 194 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F I++I + + E + + GTI +N + L A + + +FG SK D+ Sbjct: 195 FKDIDDIRRSFRQFIEKVPENGTIIMNGTIENWRELTAGAAG----KVVTFGNSKENDYS 250 Query: 260 LRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + S+ ++ ++G+ E + G+ G H N L + + A ++ A + Sbjct: 251 FDAVVYDEYARPSF-DLYIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRG 309 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAIS-----VLSQISPHG 367 L F G +R+ T+ID+ Y +P A++KAA + + PH Sbjct: 310 LLKF---TGTNRRFEKKGELKGITIIDD-YAHHPQEIEATLKAAENYPHKRICCAFQPHT 365 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 R A + + + LS + + L ++ + +S ++AL + + Y Sbjct: 366 YTRTKAFMKEFAQA--LSLADCVMLTDIYPARETDTLGVSSADIVAL--LKEKGVDAWYL 421 Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449 T D + FI + GD+++ Sbjct: 422 PTFDDMEKFILENCTQGDLLIT 443 >gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] Length = 506 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF+ A GA V+ + + +PV Sbjct: 35 VTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAAVLTDPTGAERAAASGLPVL 94 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD + +LA + I ITG+ GKTTT ++ L +++ T IG+ Sbjct: 95 VVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLVEGGLKTVRST-GLIGTVE 153 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H I V Sbjct: 154 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDIGVF 212 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELL 235 T ++P H+ SG+E+ AKA++F K G + +N DD + L Sbjct: 213 TNLSPEHMEFHSGMEDYFQAKAQLF--TPKRGKLGVVNVDDEYGRRL 257 >gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 488 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/372 (20%), Positives = 147/372 (39%), Gaps = 36/372 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 18 LIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAVAYEVEGSNVLPLTDVPL 77 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 78 IPVKGLAAQLSD--IAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 192 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T ++ HL +E +AKA++F +N DD F + + Sbjct: 193 DVAVLTNLSRDHLDYHGTMEAYGAAKAKLF-AWPNLNCRVINLDDDFGRQMAGLKQESRL 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T S + K+ ++ + V QG+ + +G N+L +G + Sbjct: 252 ITYSQLDSSAYLYCREAKFDDDGVRATL-VTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 309 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K L GR +R L L+ Y P +++ VL + Sbjct: 310 GLDYALDEILKVLPKLEGPVGRMQR----LGGADKPLVVVDYAHTPDALE---KVLEALR 362 Query: 365 PHGEGRRIAVLG 376 PH +GR + + G Sbjct: 363 PHAKGRLLCLFG 374 >gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens 200] Length = 500 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 29/234 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI---P 84 N +++DSR+I + F A+ G DG FI A+ GA V+V+TD G + + Sbjct: 21 NELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLLGDNA 80 Query: 85 VFGVDDVLGALNKL--AVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSI 133 GV LN+ A+AA+ A II ITG+ GKT+T +++ ++S+ Sbjct: 81 ERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQLVTSL 140 Query: 134 KKTYACIGSYNNHIGVPL-----------TLARMPVDVD---FGIFELGMSHLGEIRFLT 179 + A +G+ N + L TL R + + + + +S G ++ Sbjct: 141 GRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLVQGRV 200 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 V +AV T + HL +E +AK +F G LN DD E Sbjct: 201 DAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR-FSTLGHGLLNLDDPVGE 253 >gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus mitis ATCC 6249] gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus mitis ATCC 6249] Length = 450 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAASE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 307 >gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 493 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 49/385 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++T +A + + T+ IG G L R Sbjct: 98 LAELLRLRQG---IAIAGTHGKTTTTSLITSVLAEAGMDPTF-VIGGRLEAAGSHAKLGR 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL HL +P +AV+T I H+ + ++ A + Sbjct: 154 -------GEFIVVEADESDASFL-HL-QPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFV 204 Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---- 269 + L G L DD+ E++ A + K + ++G S+ A + + Q Sbjct: 205 QHLPFYGMAVLCVDDAHVLEIMPAIT-----KPVTTYGLSETAQVRAADIRHSEGQMHFT 259 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + V + + +++V + G H QN L + + + + + ++AL+ F + R +R Sbjct: 260 ALIGVNGKTRKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQR 319 Query: 330 Y-RCAL------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 Y L G FTLID+ Y +P M A I+ P GRR+ VL Sbjct: 320 YGEIPLTDPETGRNGSFTLIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRY 374 Query: 383 ELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMD 431 ++ D +VLS ++ + V+ +G + D +L RS+ V + E +D Sbjct: 375 TRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPIIAADSKSLARSLRVLGKVEPIFVERVD 434 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456 L I S D DVV+V + S G Sbjct: 435 ELEEAIHSIARDKDVVLVMGAGSVG 459 >gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-175] Length = 513 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 42/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV Sbjct: 23 ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 78 YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P LTL D V + E+ L + R + +AV Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A+AK+ +F L LN DD ++ + A Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ AIK + +GR + Q F ++D Y P + ++VL Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364 Query: 363 ISPHGEGRRIAVLG 376 I+ E R V+G Sbjct: 365 IAEFAEKRVFVVVG 378 >gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 492 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/375 (21%), Positives = 156/375 (41%), Gaps = 39/375 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G++ +S+S++P F A KG +DG+ +I A+Q GA ++ TD+ + + Sbjct: 22 LLTGLTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSGACAIL--TDLFDPCLKKVVQI 79 Query: 86 FGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + + + ++ + ++ ITG+ GKTT ++ L IG+ Sbjct: 80 IHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTISFIIKYLLDLFHGPCGLIGTIE 139 Query: 145 NHIGVPLTLA-RMPVDVDFG---IFELGMSHLGE----------IRFLTHLVRPHIAVIT 190 +G A R DV ++E+ +S I+ + +AV + Sbjct: 140 YIVGSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVMEVTSHALIQKRVEYIDFDVAVFS 199 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-------IFLNYDDSFFELL--KAKSHA 241 + HL +E +AK +FEGL + T +N DD + E + ++H Sbjct: 200 NLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEKWAIVNIDDPWCEQIVKGCQAHR 259 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L ++G K AD Q K S+ + + + QG+++E +G N L +G Sbjct: 260 L------TYGIDKPADLQASHIKLSSQGTSINLTYQGQTIECFWPLLGRFNIYNCLAAIG 313 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + ++ ++ +GR ++ L + ID ++ + S +VL Sbjct: 314 VLLTQNIPLKEIVEKMACIPNVKGRLEKVLNNLELDIY--IDFAHTDDALS-----NVLK 366 Query: 362 QISPHGEGRRIAVLG 376 +S +GR + + G Sbjct: 367 TLSEIKKGRLLTIFG 381 >gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2654] Length = 495 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 83/382 (21%), Positives = 148/382 (38%), Gaps = 53/382 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S+DSR++ P F A+ G G +FI +A++ A ++ + + Sbjct: 24 ITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTDREGAR---------I 74 Query: 87 GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTT----TKEMLT-- 127 D++ + L V R ++A+TG+ GKT+ T+++ T Sbjct: 75 AADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTRQIWTEL 134 Query: 128 ------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRF 177 I + ++ +A + P+TL R+ ++ G+ M SH + R Sbjct: 135 GLMAANIGTTGVEGAFAAPSPHTTP--EPITLHRLLAEMSQAGVTHAAMEASSHGLDQRR 192 Query: 178 LTHLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFEL 234 L + H+A T HL + ++ AKA +F L G LN DD Sbjct: 193 LEGV---HLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGRE 249 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ + G + I S G++++ QL + + G+ V IG A+ Sbjct: 250 LEEIAQERGQEVI-SIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAE 308 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ G+ +D D GR + + G +D Y P ++ Sbjct: 309 NVLVAAGLAIASGSDPDEVFATFPALTTVRGR-MQLAAKRDNGAAIFVD--YAHTPDALA 365 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 A+ L PH G+ + V G Sbjct: 366 TALEAL---RPHVMGKLVVVFG 384 >gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D + + +G + + ++G S +AD Q + Q Q V+ +GK ++++ + Sbjct: 234 DPVVREIMPR---IG-RHLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSALIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ ++G A AL RSI + + + D L + L +GD++ Sbjct: 401 LLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1] gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens CN-32] gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1] gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens CN-32] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D + + +G + + ++G S +AD Q + Q Q V+ +GK ++++ + Sbjct: 234 DPVVREIMPR---IG-RHLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSALIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ ++G A AL RSI + + + D L + L +GD++ Sbjct: 401 LLLDVYSAGEAPITG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 45/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G ++DSR +A F A G +G DFI A+ GA +V + + + Sbjct: 26 VLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76 Query: 87 GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G ++ +LA +AAR + + A+TG+ GKT+ E+ + A IG Sbjct: 77 GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIG 136 Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 SY+ + P LAR D+ IFE L + R + + Sbjct: 137 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 T+ + HL +E +AK +F E + GT + DD + A Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKR 252 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I G+ A +L + S+ + + ++G+S ++ IG + N L+ G+ Sbjct: 253 GLKLI-DIGEKAEA-IRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALVAAGL 310 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V D+ + AL++ P GR +R + N G +D Y P ++AAI L Sbjct: 311 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 365 Query: 363 ISPHGEGRRIAVLG 376 PH EG V G Sbjct: 366 -RPHTEGLLWVVFG 378 >gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ AF IKG DGH++I A+Q GA LVVV S I Sbjct: 24 ITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQNGACLVVVEEFFDTSKIEGKIDYI 83 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ +I +TG+ GKT+T M+ L + + IG+ Sbjct: 84 KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIK 143 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 144 NMIGSREIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E +AK ++F G+ K + N DD + K + Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDRW-----GKRIIEMYPDSVT 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A R K ++ E+ G+ E+ + G N L L Sbjct: 255 YAKDSDAQVCARNIKLFVNKNQFELWYNGEKEEITLNIPGLFSIYNSLAASACCISLGIK 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +DT K L GR + N+ F +ID Y P + ++++ + EG Sbjct: 315 LDTIKKGLENLKAVPGRFEIVES--NEKFTIVID--YAHTPDGL---LNLMKTVDEVAEG 367 Query: 370 RRIAVLG 376 R++ + G Sbjct: 368 RKVLLFG 374 >gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2] gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2] Length = 462 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 150/357 (42%), Gaps = 44/357 (12%) Query: 29 GISIDSRSIAPQE--AFFAIKGPH-YDGHDFILHAVQKGAGLVVVNT----DMVASIGS- 80 G I +A QE A KG Y GH+ H KGA LVV +T D V + + Sbjct: 28 GYKITGSDVARQELTEKLAAKGAQIYIGHE-AEHV--KGADLVVYSTALSKDNVERMAAE 84 Query: 81 -LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L+IPV L++ + ARL + +A+ G+ GKTTT M+ + + C Sbjct: 85 ELNIPV---------LHRAQMLARLMNAGKGVAVAGAHGKTTTSSMIALVMEK------C 129 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 IG + G + + + + FL + P IA++T I P HL N Sbjct: 130 DADPTYIIGGEIVNVGTNAKAGKGEYVVAEADESDGSFLQY--HPSIAIVTNIEPDHLEN 187 Query: 200 FSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + G ++ +A + +++ G + DD L K A + ++G ++++ Sbjct: 188 YDGDFGKLKAAYVKFLSQVKENGKAIVCADDETITELLPKLDADTASKLITYGIDSDSEY 247 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV--DTAIK 315 + + E+ +G ++ + + G H N + T +++ L A + D K Sbjct: 248 KAENISLGDRKVSFEMTHRGTTLGTLELSVPGRHNVYNAMAT--VITCLEAGLSFDNIAK 305 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 A+ F G +R++ L + L+ + Y +P ++A IS + G+RI Sbjct: 306 AIHEFI---GAKRRFQV-LGEVNDILVIDDYAHHPTEIQATIS-----AAKATGKRI 353 >gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] Length = 492 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 23/226 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V + +DSR + P + F AIKG DG FI A++ GA V + D + + Sbjct: 15 APSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGA--VAIIADRLCEFETS 72 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTY 137 P++ V ++ L +L A+R + + +I +TG+ GK+TT M+ Sbjct: 73 FEPLYLVSELTKKLPEL--ASRFYQQPSHMLDLIGVTGTNGKSTTTAMIAHLAQFCNSQS 130 Query: 138 ACIGS--YNNHIGVPLTLARMPVDVDF------------GIFELGMSHLGEIRFLTHLVR 183 A IG+ Y + + + P VD + + +S G ++ + Sbjct: 131 AIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAMEVSSHGLVQQRVAQCQ 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 AV T ++ HL + AK +F+ E + LN DD Sbjct: 191 FKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPE-LVVLNQDD 235 >gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4] gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D+ + + +G + + ++G S +AD Q ++Q Q V+ +GK ++++ + Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFQQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ + G A AL RSI + + + D L + L +GD++ Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA + T++ +TG+ GKTT ++L + + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQLLAQWVELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDASAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella piezotolerans WP3] gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans WP3] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/363 (23%), Positives = 151/363 (41%), Gaps = 47/363 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----- 82 N +++DSR++ + F A+ G DG +I A+ GA V+V+TD G++S Sbjct: 20 NDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVLVHTDSPEEHGNISTDDGL 79 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I F ++ + L A A L SK II +TG+ GKT+ +++ K A + Sbjct: 80 LISFFQLNRQVSVL--AAQAYPLSSKRPKIIGVTGTNGKTSVTQLIAQLQQLQSKQTAVM 137 Query: 141 GSYNNHIGVPL------TLARMPVDVDFGIFE--------LGMSHLGEIRFLTHLVRPHI 186 G+ N + L T + + FE + +S G ++ V + Sbjct: 138 GTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVSSHGLVQGRVEAVPFDV 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T ++ HL +E +AK +F +N DD+ A+ A KT Sbjct: 198 AVFTNLSRDHLDYHHTMEAYGAAKQRLFT-FSSLRAGLINCDDAIGASWLAQ--ATSTKT 254 Query: 247 I-YSFGKSKNADFQLRKWKQCSEQS--------WMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +S + AD KQC W E + + +S +G N++ Sbjct: 255 LGFSIKGNTKADIYA---KQCLYHDGGVTCTLVWPEGEAKLQSPL-----LGDFNLSNLV 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 LG + ++ D+ ++ S P GR +R+ + G TL+ + Y P +++ A+ Sbjct: 307 AALGALYLVGEDMAAIVRLASALTPVAGRMERFTTS---GNVTLVVD-YAHTPDAIEQAL 362 Query: 358 SVL 360 L Sbjct: 363 QAL 365 >gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 482 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 14/174 (8%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-KLAVAARLRSKATIIAITGSVGKTT 121 + A +VVV+ + S S+ V+ V+G + + + ++ II ITG+ GK+T Sbjct: 75 ENADIVVVSPGVPLSTPSIVSAVYKGIPVIGEIELSWQILSLIKENVKIIGITGANGKST 134 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIR 176 T + L K G +IG P L L +D+++ + EL L I+ Sbjct: 135 TSTLTYEFLKRDGKKVQLAG----NIGYPMAEVVLKLLNKEIDMEYLVLELSSFQLEGIK 190 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +P A I I P H+ +S ++E AKA+IF+ + LN DD Sbjct: 191 TF----KPDFAAILNITPDHMDRYSDMKEYIEAKAKIFQNQNGDDYLILNMDDE 240 >gi|153951182|ref|YP_001398284.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938628|gb|ABS43369.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 475 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 II IT S GKT+ K L L K+Y S N +G+ + + D I E G Sbjct: 157 IILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDAQIYIAEAG 216 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 G+I +T ++PHI+++ I AHL F +E I S K E Sbjct: 217 ARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLE 260 >gi|189347972|ref|YP_001944501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlorobium limicola DSM 245] gi|226711892|sp|B3EIL0|MURD_CHLL2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189342119|gb|ACD91522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium limicola DSM 245] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 17/144 (11%) Query: 101 AARLRSKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVP---LTLAR 155 AA KA I ITG+ GKTTT +L +K Y N IGVP L L Sbjct: 98 AASWFCKARIAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGN--IGVPFSSLVLDM 155 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214 P D+ + EL L RP ++VIT I P HL ++G ++ A+AK I+ Sbjct: 156 APADL--AVVELSSYQLEG----CETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIY 209 Query: 215 EGLEKTGTIFLNYDDSFFELLKAK 238 + T+ N+DD LL+A+ Sbjct: 210 ASQRASDTLVYNFDDP---LLRAQ 230 >gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] Length = 491 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/356 (24%), Positives = 138/356 (38%), Gaps = 42/356 (11%) Query: 22 VPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 P G V ++ D+R + P FF + G DGHDF AV +GA +VV + Sbjct: 18 TPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPL----- 72 Query: 80 SLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 L +P V V A+ + A ARL++ + +TG+ GKTTT ++ L + Sbjct: 73 GLGVPELRVASVRAAMARAAANFNGDPTARLQT----VGVTGTNGKTTTAFLVRGLLEAA 128 Query: 134 KKTYACIGSYNNHIG-----VPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-- 185 + +G+ +G V T A + + D G I +H + H Sbjct: 129 GRQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRA 188 Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 A+ T + HL +E+ AK +FE G +N DD + L + Sbjct: 189 DAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFE--TGPGVAVVNVDDPYGRRLAEEL 246 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G + + +AD++ + S Q + + G QN+L Sbjct: 247 RADG-AALVTIALDHDADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNVLGA 305 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPASM 353 + V L ++ AL P+ GR G+ QGF L+D Y P S+ Sbjct: 306 VAAVRALGVPLEQIAAAL----PQAGRVPGRFEPVDEGQGFAVLVD--YAHTPDSL 355 >gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] Length = 511 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 36/282 (12%) Query: 11 LQAIQGHSI----GIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +++I+ H + GI+P +N IS +S+ + F + G + DG F + A+ Sbjct: 1 MRSIKLHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAI 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSV 117 + GA ++ IGS+ + +DD L + VA R K +I +TG+ Sbjct: 61 ENGAEAAIIGPAAKQKIGSIDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTN 120 Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVD 161 GKTT +L L + K A G+ +N G A + + + Sbjct: 121 GKTTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESE 180 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---E 218 F I E+ + + R AV T + HL S +E K ++F E Sbjct: 181 FAILEVSSHSIAQKRISG--CEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNE 238 Query: 219 KTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADF 258 K G LN+DD + L + + + + T + + KN DF Sbjct: 239 KDGISVLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDF 280 >gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. Y412MC61] gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC61] gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] Length = 489 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 41/360 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR +AP FF +KG DGHDF AV +GA +V + S+ +PV V Sbjct: 26 LEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPL-----SVDVPVVLVS 80 Query: 90 DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134 D A+ LA A R + +I +I + + K+ I IK Sbjct: 81 DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKV 140 Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++Y + + + T +M VD V+F E+ L + R H +AV T Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244 + HL +EE +AK +F L + LN+DD + K + A Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I ++G + +D + + + + S V +G N+L Sbjct: 255 -PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T AL+ P GR + Q F ++D Y P S++ A+ + Q++ Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369 >gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] Length = 486 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 170/427 (39%), Gaps = 49/427 (11%) Query: 7 FHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL+ +Q + G P+ + I D+R + P F I+G DGHDF A +KG Sbjct: 3 LHKLLRFLQPYMTFKGENPE--ITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122 A V+ ++ L IPV V + A+ LA A + + +I ITG+ GKTTT Sbjct: 61 AAAVIAQREL-----DLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMP-VDVDFGIFE 166 ++ L+ + IG+ I + T +M VD + E Sbjct: 116 SHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKT 220 + L E R H +IAV T + HL ++E AK +F L E+ Sbjct: 176 VSSHALDEGRI--HGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEP 233 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 LN DD + + A + S+G + AD + + S + ++ Sbjct: 234 KYAILNSDDPASAEYEKSTAA----HVISYGIDQEADLRAINIQMTSGGTEFDLISPFGK 289 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +V IG N+L ++G + IK+ GR + Q F Sbjct: 290 HKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG--QDFSV 347 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++D Y+ P S+K A+ + Q + R ++G C G+ +S +AE+ Y+ Sbjct: 348 IVD--YSHTPDSLKNALETVKQFALK---RIFTIVG--C-GGDRDRSKRPLMAEIACQYS 399 Query: 401 ISHVWLS 407 ++ S Sbjct: 400 TDPIFTS 406 >gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans PW2] gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans PW2] Length = 473 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 30/282 (10%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L IPV+ +L AL T IA+ G+ GKTTT M L + + + Sbjct: 97 LGIPVWPRAKMLAALGH---------GCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFL 147 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 IG + + G + + + + FL + P + V+T + HL ++ Sbjct: 148 ------IGGIVEGYKTNGRNGSGTYFVAEADESDSSFL--YLEPRVVVVTNVEADHLDHY 199 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + EI + A+ + + G I DD +EL ++ S K I ++G D Sbjct: 200 GSLAEIENTFAQFMSLVGEQGVIVACGDDKQLYELARSTS-----KRIVTYGFDARNDIV 254 Query: 260 LRKW-KQCSEQSWMEVQL-QGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 +C++ S ++ G+ EV + H G H N +G+ L D A +A Sbjct: 255 CEVCDDRCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARA 314 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 LS F EG +R+ + T++D+ Y +P +KA ++ Sbjct: 315 LSTF---EGVRRRFTRVGDVCGVTVVDD-YGHHPTEIKATLA 352 >gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 484 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 157/380 (41%), Gaps = 43/380 (11%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V G +N I IDSR + + F A+ G DG FI A+++GA VV V + + Sbjct: 14 VRAGLLN-IRIDSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVCRPCSV-PVQTG 71 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V +D AL LA AAR + T ++ ITG+ GKTT +L + Sbjct: 72 GAAVVVAEDPRKALGLLA-AARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTG 130 Query: 139 CIGSYN-----NHIGVPLT------LARMPVD-----VDFGIFELGMSHLGEIRFLTHLV 182 +G+ N + P+T L M D V+ E+ L + R Sbjct: 131 LLGTVNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSG--A 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHA 241 R A++T + HL +E SAK+ +F E ++ +N DD + L + Sbjct: 189 RFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQ--- 245 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQS---WMEVQLQGKSMEVVHHGIGYHMAQNM-- 296 LG YS + D Q+ + S + + +GK+ E+ +G A N+ Sbjct: 246 LGRGVGYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAG 305 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + G+ L + A++ L+ F GR +R ++G +D Y P +++ Sbjct: 306 VQAAGLAMGLPVE---AMQGLASFSGVPGRMERIEN--DKGLNVFVD--YAHTPDALE-- 356 Query: 357 ISVLSQISPHGEGRRIAVLG 376 +VL + G R IAV G Sbjct: 357 -NVLRALRAAGFARVIAVFG 375 >gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] Length = 515 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 46/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 V G+++DSR++ P + + A+ G G DF GA V+ + D V + + +P Sbjct: 36 VTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADAGAAAVLTDADGVERLRAAGVDLP 95 Query: 85 VFGVD---DVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 V V+ VLG +AAR+ T++ ITG+ GKTTT ++ AL ++ + Sbjct: 96 VIVVEAPRSVLG-----TIAARIYGTTDLSLTMVGITGTNGKTTTAYLVASALDALGQRT 150 Query: 138 ACIGSYNNHIG---------VPLT------LARM-PVDVDFGIFELGMSHLGEIRFLTHL 181 IG+ IG P + LA M D D + E+ L + R L Sbjct: 151 GLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTCVMEVSSHALSQHRVDGVL 210 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +++ T ++ HL + +E+ SAKA++F E++ + DD + L A+ Sbjct: 211 Y--DLSLFTNLSQDHLDFHADMEDYFSAKAQLFT-PERSTRGLICVDDIWGRRL-AEECG 266 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + T+ + + + AD+ + +E + ++ G +++ G N M Sbjct: 267 IPVTTLTTI-EGQTADWVV--TVDATEPARFALRGTGIELDLRSALPGDFNVANTAMAAV 323 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKR----YRCALNQGFFTLIDESYNANPASMKAAI 357 + +L D + +A+ GR ++ ++ G ++D Y P +++AA+ Sbjct: 324 ALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVVD--YAHTPDAVEAAL 381 Query: 358 SVLSQISPHGEGRRIAVLG 376 + L P GR + VLG Sbjct: 382 AAL---RPTTTGRLVVVLG 397 >gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] Length = 494 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ + Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTP 253 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++S+G + A F + ++ LQG S + V Y + + Sbjct: 254 Y----EVFSYGIDEEAQFMAKNIQES---------LQGVSFDFVTPFGTYPVKSPYVGKF 300 Query: 301 GIVSILT---------ADVDTAIKALSVFHPKEGR 326 I +I+ ++ IKA+ P EGR Sbjct: 301 NISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGR 335 >gi|167586016|ref|ZP_02378404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia ubonensis Bu] Length = 175 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%) Query: 315 KALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRI 372 + L F P +GR + R A + T++D++YNANP SM+AAI VL +Q +P R+ Sbjct: 17 QGLEAFEPVKGRLQVRQAIAGSLAGATVVDDTYNANPDSMRAAIDVLAAQPAP-----RV 71 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 V+GDM E+G+ +FH ++ I ++ AL DA R Y +T Sbjct: 72 LVIGDMGEVGDEGPAFHREVGAYARERGIDALF-------ALGDA-SRDACASYGDT 120 >gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 317 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 27/233 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 18 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + G L+ A+A R + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 78 IPVKGLAGQLS--AIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRCGIVG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L R + V H Sbjct: 136 TLGTGFYGSLQSGRHTTPDPIAVQATLTDL---RKAGARAVAMEVSSHGLDQGRATALAF 192 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +AV+T ++ HL +E A+AKA++F + + +N DD F L A Sbjct: 193 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRV-INLDDDFGRELAA 244 >gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] Length = 484 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 34/271 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F L + I+G + +P ++GI+ D+R+ + F IKG +DGHD + KG Sbjct: 6 FMKLYELIKGVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGC 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123 +VV D+ L + V D A L A + +I +TG+ GKTT Sbjct: 66 AVVVCERDL-----GLERQIV-VSDTRAAFPMLCAAWFGHPERELELIGVTGTNGKTTIT 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHL 181 ++ LS IG+ N IG + + +FEL M+ G ++ Sbjct: 120 TVIKKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAG-CKYTVME 178 Query: 182 VRPH-------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 V + V T + HL +E AK +F + + + +N D Sbjct: 179 VSSQGLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLF---DISDSAIINID 235 Query: 229 DSFFELLKAKSHALGIKTIY-SFGKSKNADF 258 D + + +A I Y S+ + +ADF Sbjct: 236 DEY-----GRRYAKEIPCPYKSYSVNGSADF 261 >gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum PSI07] gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum PSI07] Length = 483 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + D D Sbjct: 386 GTVDALLLAEVYAAGEPSIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6] gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6] Length = 462 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 79/343 (23%), Positives = 135/343 (39%), Gaps = 54/343 (15%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140 +IP+ +LG + ++S I ++G+ GKTTT M + + +++ K + Sbjct: 93 NIPLLTRAQLLGEM--------MKSYKIPICVSGTHGKTTTTSMASHVLMAADKNPTISV 144 Query: 141 GSY------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 G N HIG + D + E + F P I++I I Sbjct: 145 GGILPLIKGNYHIG----------NTDTFLMEACEYTNSFLDFF-----PKISIILDIDA 189 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKS 253 HL F +E+I ++ + E L GT+ +N DD F+++ + L + I YS Sbjct: 190 DHLDFFKDLEDIRNSFRKFAELLPADGTLIINADDPAFKMI---TKDLPCEVITYSLSNI 246 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 N + + + S+ + G H N L + + L D DT Sbjct: 247 GNYTADMITYDELGHASFRALYKGEPIGNFALQVPGSHNVSNALAVIALAEKLGIDADTI 306 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------S 364 K FH G +R+ T+ID+ Y +P +KA ++ ++ Sbjct: 307 QKGFDSFH---GTNRRFEQKGEMNGATVIDD-YAHHPTEIKATLNTARRVPHKTIWCVFQ 362 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-----LSLYNIS 402 PH R ++L E LS + H+ LA++ L +Y IS Sbjct: 363 PHTYTRTKSLLPQFAEA--LSIADHVVLADIYAARELDIYGIS 403 >gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus infantis SK1302] gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus infantis SK1302] Length = 450 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISDAPIVGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGYPASQVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I+ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGIQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQSNMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---Q 277 + LN++ + L K++A T+ F + D +++E L + Sbjct: 218 DYLVLNFNQELAKELATKTNA----TVVPFSTLEKVD-----------GAYLEDGLLYFR 262 Query: 278 G-KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G K M G+ G H +N L T+ + + D + + LS F Sbjct: 263 GEKVMAADEIGVPGSHNVENALATIAVAKLRGVDNEIIKETLSAF 307 >gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 99/381 (25%), Positives = 152/381 (39%), Gaps = 53/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI DSR + F I G H DGH FI AV GA +V + V I V Sbjct: 37 ITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAGASAIVTTREDVEV--PEGIAVL 94 Query: 87 GVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++ AL+ + AR K ++ ITG+ GKTTT + L IG Sbjct: 95 RVKELQPALDTIVPYFHDYPAR---KMRVVGITGTNGKTTTSYITRAILRKAGYKVGLIG 151 Query: 142 SYNNHIG---VPL------------TLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + I +P+ TLA M +D+ + E+ L + R + Sbjct: 152 TIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVMEVSSHALDQNRVAG--IEFD 209 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSH 240 AV T + HL ++ AKA++F+ + +TG T +N DD+ + A H Sbjct: 210 TAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKTAVVNIDDAVGATMLA--H 267 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---MEVVHHGIGYHMAQNML 297 A Y+ K AD LR + E L +S M + H G N++ Sbjct: 268 AKCKHLTYAI--EKEAD--LRATDILVHANGAEFVLHHESFGEMPLKLHITGIFNVYNVM 323 Query: 298 MTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +G + L +D A+ + L F GR + + Q F ++D Y P ++ Sbjct: 324 SAVG--AALAEHIDAAVIKETLEAFTAVPGRFELVKAG--QDFSIIVD--YAHTPDGVEN 377 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + +I+ + R IAV G Sbjct: 378 VLKTARKIA---KKRIIAVFG 395 >gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] Length = 494 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 V+ I+ DSR+ F A KG D H+F + +++G +VVVN ++ + + +P Sbjct: 23 VDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELEGEVTQVIVP 82 Query: 85 VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + L VA+ L + T +TG+ GKT+ M+ + + K Sbjct: 83 -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKN 131 Query: 137 YACIGSYNNHIG---------VPLTLA-----RMPVDVDFGIFELGMS----HLGEIRFL 178 A +G+ I P T++ + VD + + +S LG +R Sbjct: 132 SAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLGRLRG- 190 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234 V +A+ + + HL +E AK+ +F E L K + LN DD F Sbjct: 191 ---VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEF--- 244 Query: 235 LKAKSHALGIKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 SH L T ++++G A F + + + ++ V +G Sbjct: 245 ----SHYLASVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYRVKSPYVGRF 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V A ++ I A++ P EGR Sbjct: 301 NISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGR 335 >gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 491 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 42/371 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV V Sbjct: 26 IAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVIYVR 80 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D A+ LA ++ ITG+ GKTT ++ + + IG+ I Sbjct: 81 DSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKI 140 Query: 148 G---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 G P LTL D V + E+ L + R + +AV Sbjct: 141 GDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAVFMN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIK 245 ++ HL +EE A+AK+ +F L + LN DD ++ + A Sbjct: 199 LSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA---- 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 255 HVITFGIKQQADFKANNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFA 314 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++ AIK + +GR + Q F ++D Y P + ++VL I+ Sbjct: 315 LHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLETIAE 367 Query: 366 HGEGRRIAVLG 376 E R V+G Sbjct: 368 FAEKRVFVVVG 378 >gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] Length = 489 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 136/350 (38%), Gaps = 48/350 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + H++ + I DSR +AF AI+G DGH FI AV+ Sbjct: 1 MKQLKDLLFGVSLHAVSGSTAVGIESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKN 60 Query: 64 GAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAIT 114 G V+ D+ + + + D AL +A +A LR ++ +T Sbjct: 61 GVRAVICEELPQDLADGVTYVEVA-----DTQLALAVMASNYYGNPSANLR----LVGVT 111 Query: 115 GSVGKTTTKEML---------TIALSSIKKTYACIGSYNNHIGVP--LT----LARM-PV 158 G+ GKTT +L + L S K + + P LT L+RM Sbjct: 112 GTNGKTTVSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEA 171 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 V+F E+ + + R T + + T ++ HL + K ++F+GL Sbjct: 172 GVEFCFMEVSSHGIAQRR--TEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDGLP 229 Query: 219 KTGTIFLNYDDS--FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 K+ N DD F + ++ L ++ ADF+ + +Q + +++Q Sbjct: 230 KSAFALTNADDKNGLFMIQNTRARKL------TYALRSYADFRAQILEQQLDGQLLKIQ- 282 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 EV IG A N+L S+L ++ LS +GR Sbjct: 283 ---DNEVWTKLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDGR 329 >gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D12] gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] Length = 483 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 150/367 (40%), Gaps = 41/367 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ DSR IA F A++G DGH FI A+QKGA LV V+ ++ G I + + Sbjct: 27 GMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQQGIGYILIKNL 86 Query: 89 DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 LG L A+ + K I+ +TG+ GKTTT +L L K A G+ Sbjct: 87 RKHLGVL-----ASNFYDWPQKKMKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIE 139 Query: 145 NHIGVPLTLA--RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI-------------AVI 189 IG + A P +D I + +H + ++ V H A+ Sbjct: 140 YKIGKEVIEAPNTTPESLDL-IKMIKKAHDQGLEYIVMEVSSHALELGRVNMLEFDGAIF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E+ AK ++F L G N DDS+ + L + H + S Sbjct: 199 TNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKGIKIFNIDDSYGKRLWEEFHGV------S 252 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G +K AD Q + + +E+ L G E +G N+L +L +V L Sbjct: 253 YGMNK-ADVQGKILAFEGGREEIELSLFGNKKECKIQILGGFNLYNLLGSLALVKELGMS 311 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + L GR + C Q + +ID ++ + A ++L + G Sbjct: 312 DEDIFSKLGNLKGAPGRFETLDCG--QDYMVIIDYAHTGD-----ALENILQAVQEIKSG 364 Query: 370 RRIAVLG 376 + I + G Sbjct: 365 KIITIFG 371 >gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 482 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 150/372 (40%), Gaps = 43/372 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I IDSR + F A+ G DG FI AV +GA +V + V GS +IP+ VD Sbjct: 20 ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCRHNEVEYCGS-AIPIV-VD 77 Query: 90 DVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D L +LA + II +TG+ GKTT +L + IG+ Sbjct: 78 DPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTIAYRW 137 Query: 148 G-----VPLT----------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 PLT LA+M VD +F SH + R + + + + T + Sbjct: 138 PGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGV-IFTNL 196 Query: 193 APAHLSNFSGIEEIASAKAEI-FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 HL ++E AKA + FE K + + D+ + + A + I FG Sbjct: 197 TQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQW-----GRKLAKLVPEIIGFG 251 Query: 252 KSKNADFQLRKWK----QCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 KN Q+ + S ++ + +Q+ + K E+ +G H A+N+L V Sbjct: 252 -FKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLA----VQA 306 Query: 306 LTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ + A + F G G+ R + +D ++ + A I+VLS + Sbjct: 307 ISLQLGLAPEDFCCFEKFTGVPGRLERIVNKKQLDIFVDYAHTPD-----ALINVLSALR 361 Query: 365 PHGEGRRIAVLG 376 G R I V G Sbjct: 362 DVGFKRIITVFG 373 >gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 13/146 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-NNHIGVPLTLARMPVDVDFGI 164 S AT I ITG+ GK+TT ++ L A + SY +IG PL R+ + G Sbjct: 107 SDATFIGITGTNGKSTTTTLIGAMLKQ-----AGLPSYVAGNIGTPL--CRVAPSLAAG- 158 Query: 165 FELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E ++ L + T RP +A++ +AP HL + +E+ AKA IFE + Sbjct: 159 -ECVVAELSSFQLETIDEFRPRVALLLNLAPDHLDRYDQVEDYYRAKARIFENQRPSDFA 217 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYS 249 +N DD +L+ + A G + +S Sbjct: 218 VINADDPL--VLQVSAQARGRRIAFS 241 >gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580] Length = 488 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 147/382 (38%), Gaps = 58/382 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHD+ A +KGA +V ++ A +PV Sbjct: 24 ITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-----DVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 + AL L+ A + + +I ITG+ GKT+T M+ IG+ Sbjct: 79 IIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMY 138 Query: 144 ----------NNHIGVPLTLA---RMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPHI 186 N +TL R VD VD + E+ H+G + H I Sbjct: 139 TKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRV----HGCDYDI 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237 A T + HL +EE AK+ +F L E LN DD ++F + + Sbjct: 195 AAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAYFAQVTS 254 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H L ++G +AD K + + ++ S +V +G N+L Sbjct: 255 -AHLL------TYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVL 307 Query: 298 M---TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 I A + I+ L K RG+ Q F ++D Y P S++ Sbjct: 308 TAAAIAIAADIPFATITEGIEGL-----KGVRGRFELVDAGQDFPVIVD--YAHTPDSLE 360 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 ++ ++ EG+ V+G Sbjct: 361 NVLNTCRGLT---EGKLFVVVG 379 >gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium vannielii ATCC 17100] Length = 470 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R+ + +IAITG+ GK+TT + L++ + C G+ + L L VD Sbjct: 109 RVGANCPVIAITGTNGKSTTTALSNHLLNAAGRASVCGGNIGRAV---LDLPPF-VDGQH 164 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L LT + P ++ I P H+ +E A+ K ++F + GT Sbjct: 165 YVLELSSFQLD----LTPSLDPDAGILLNITPDHIDRHGSLEGYAAVKEKLFANMTGGGT 220 Query: 223 IFLNYDDSFFELLKAKSHALGIKTI 247 + DD+ + + A++ A G++T+ Sbjct: 221 AVIGADDALCDAIAARAEARGVRTL 245 >gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27] gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27] Length = 464 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 44/316 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128 NT++ A+ G L IPV ++L L + IA+ G+ GKTTT ++ + Sbjct: 77 NTEVSAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 126 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +++ T+ IG N IG L + G + + + + FL L++P +AV Sbjct: 127 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 176 Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246 IT + H+ + G + +A E L G + DD ELL + Sbjct: 177 ITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPGIG-----RP 231 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304 + ++G K AD+ LR+ KQ Q+ +V GK + VV + G H A N L + + Sbjct: 232 VLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 291 Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359 L D+AI+ L F G G+R++C A G L+D+ Y +P + A + Sbjct: 292 ELGI-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 346 Query: 360 LSQISPHGEGRRIAVL 375 + P RR+ V+ Sbjct: 347 IRAGWPE---RRLVVI 359 >gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] Length = 483 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 43/372 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 + G++IDSR I F AI G DGH FI A++ GA V+ ++ + V Sbjct: 23 ITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELGATAVLCEKLPEEQDPKVTFVQV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + +G + R K ++ +TG+ GKTT +L + + N Sbjct: 83 ASTESCVGEVATQFYGDPSR-KLKLVGVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCN 141 Query: 146 HIG-----------VPLTLARM-----PVDVDFGIFE-----LGMSHLGEIRFLTHLVRP 184 +I P+ L R+ ++ E + +G ++F L Sbjct: 142 YIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYAFMECSSHAIAQKRIGGLKFAGGL--- 198 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 T + HL E AK F+GLEK N DD ++ A Sbjct: 199 ----FTNLTRDHLDYHKTFENYRDAKKAFFDGLEKDAFAITNADDKNGMVMVQNCKA--- 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + ++ ADF+ K +C + M + + GK EV IG N+L G Sbjct: 252 -NVKTYSTRTMADFKA-KIIECHFEG-MYLDINGK--EVGVQFIGKFNVSNLLAVYGAAV 306 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L + + +S GR + +G+ ++D Y P +++ ++ + ++ Sbjct: 307 MLGKKPEDILLIMSTLKSVNGRLEPIHSP--EGYTAIVD--YAHTPDALENVLNAIHEVL 362 Query: 365 PHGEGRRIAVLG 376 +G+G+ I V G Sbjct: 363 -NGKGKVITVCG 373 >gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] Length = 501 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 98/411 (23%), Positives = 153/411 (37%), Gaps = 58/411 (14%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L T L +A+ + Q + DSR I P + F A G DG + A Sbjct: 1 MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATII 111 V +GA +V + V P D + AL L A + + ++ Sbjct: 56 VARGAAACLVECEGVE-------PFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVL 108 Query: 112 AITGSVGKTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARM------PV 158 A+TG+ GKT+T L AL+ + K A +G+ +GVP L PV Sbjct: 109 AVTGTNGKTSTAWWLADALNQLSKEELPALAGCALVGTLG--MGVPPALQTTGMTTPDPV 166 Query: 159 DVD--FGIF-ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + F F E G S +G R H+A+ T HL G+ Sbjct: 167 RLQRAFAQFAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQ 226 Query: 209 AKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK +F+ GL +N DD L A+ + ++S A Q + Sbjct: 227 AKRALFDWPGLRAA---VVNVDDPQGAALHAELQGSDLD-LWSISLQGPARLQAKHIVHT 282 Query: 267 SEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + V +G EV+ IG + N+L + + L + A++A + P G Sbjct: 283 GAGLALTVA-EGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPG 341 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 R ++ A L+ Y P ++ A++ L ++ GR V G Sbjct: 342 RMEQLAAAGQ----PLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFG 388 >gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium medicae WSM419] gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae WSM419] Length = 486 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/393 (22%), Positives = 154/393 (39%), Gaps = 44/393 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +F +L ++G + I + GI+ DSR + P + F A+ G DG +I A+ +GA Sbjct: 10 SFPELSAQLKGDAANIE----IGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT---- 121 VV T A G I VF + + L K + + R T++A+TG+ GKT+ Sbjct: 66 SAVVAGTSARAEAG---INVFTISEPRRFLAKASSSFFGRQPETMVAVTGTAGKTSVASF 122 Query: 122 TKEM------------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168 T+++ T +S + Y + + + P++L ++ ++ D G+ Sbjct: 123 TRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPD-----PVSLHKLLAELADEGVTHAA 177 Query: 169 M---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 M SH L + R V A T + H+ +E ++K +F L G+ Sbjct: 178 MEASSHGLDQQRL--DGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLPKGSPA 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEV 283 + + D + + + + G +N DF L++ + + EV + E+ Sbjct: 236 VIFADDQWSADAIAAARKAGHDVRTVG--RNGDFIALKRVEHFRHKQSAEVHVGDDIYEI 293 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L+ G+ A AL GR G +D Sbjct: 294 HVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGR-LELVGQTKDGALAYVD 352 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ +VL + P GR + V G Sbjct: 353 --YAHKPDALS---NVLESLRPFTTGRVVVVFG 380 >gi|289443662|ref|ZP_06433406.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46] gi|289416581|gb|EFD13821.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46] Length = 258 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 39/207 (18%) Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + A V+ AL+ P R + T+ID++YNA Sbjct: 55 GDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSR--HRMQVTTRGDGVTVIDDAYNA 112 Query: 349 NPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + + Sbjct: 113 NPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVV 172 Query: 407 SGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-----------LVD----------- 443 G RSI +H+ ++G + +++ + D Sbjct: 173 VGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADGDAALALLRAE 223 Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEE 467 GDVV+VK+SN+ G + + L+ + Sbjct: 224 LRPGDVVLVKASNAAGLGAVADALVAD 250 >gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Koribacter versatilis Ellin345] gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Koribacter versatilis Ellin345] Length = 453 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 +IAITGS GKTTT + L S K G +IG P ++ A++ D + + E+ Sbjct: 110 VIAITGSNGKTTTTSLCGDILQSGGKKTLVGG----NIGTPAISFAQLANDDTWSVLEIS 165 Query: 169 MSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L I RF RP IA I I P HL E+ A+AK IFE + LN Sbjct: 166 SFQLETIERF-----RPEIAAILNITPDHLDRHGTFEKYAAAKERIFENQREHDFAILNA 220 Query: 228 DDS 230 D+ Sbjct: 221 DNE 223 >gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437] Length = 466 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 27/266 (10%) Query: 111 IAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT M+ T+ TY IG +G P + + Sbjct: 110 IAVAGAHGKTTTSSMIAQTMEEGGADPTY-VIGGEVVSLGSNAKAGSSP-------YVVA 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P IAV+T I P HL N+ G E++ A +++ G L + Sbjct: 162 EADESDGTFLEYF--PRIAVVTNIEPDHLENYEGSFEKLKEAYRRFLSQVKEDGVAILGW 219 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286 DD + + A + ++ + AD+ +Q ++ V QG + +V H Sbjct: 220 DDPYLPEIAGACRA----RVITYALDREADYTATHLQQVLNRTQFTVNYQGTPLGDVTIH 275 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + + DT + LS F G +R++ + + L+ + Y Sbjct: 276 VPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRFR---GAKRRFQV-IGEADGILVVDDY 331 Query: 347 NANPASMKAAISVLSQISPHGEGRRI 372 +P ++A I+ L ++ RRI Sbjct: 332 AHHPTEIRATINGLKALN-----RRI 352 >gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC 19707] gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC 19707] Length = 476 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 44/316 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128 NT++ A+ G L IPV ++L L + IA+ G+ GKTTT ++ + Sbjct: 89 NTEVSAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 138 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +++ T+ IG N IG L + G + + + + FL L++P +AV Sbjct: 139 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 188 Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246 IT + H+ + G + +A E L G + DD ELL + Sbjct: 189 ITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPGIG-----RP 243 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304 + ++G K AD+ LR+ KQ Q+ +V GK + VV + G H A N L + + Sbjct: 244 VLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 303 Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359 L D+AI+ L F G G+R++C A G L+D+ Y +P + A + Sbjct: 304 ELGI-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 358 Query: 360 LSQISPHGEGRRIAVL 375 + P RR+ V+ Sbjct: 359 IRAGWPE---RRLVVI 371 >gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] Length = 495 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 30/275 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +P + G+ +DSR++ P E F A++G +DG ++ A GA +V ++ L Sbjct: 27 LPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALVEDELPGEEPPL 86 Query: 82 SIPVFGVDDVLGALNKLA-VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKT 136 V + G +KL +A R + + A+TG+ GKTT ++ L S Sbjct: 87 PCVV-----IPGLRHKLCEIAGRYYRDPSRQMHVAAVTGTNGKTTVSQLFAQLLRSAGYD 141 Query: 137 YACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPHI------- 186 IG+ + GV ++ P + + E+ S G+ + F++ V H Sbjct: 142 CGVIGTLGASLTAGVQDSVHTTPDSI--AMQEILASWAGQAVPFVSMEVSSHALDQGRVN 199 Query: 187 ------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 A+ T + HL +E +AKA +F E T LN DD F ++L + Sbjct: 200 GLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLF-AFESLRTAILNSDDPFSDVLAGR-M 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 +LG+ + +AD +L + S M ++ Sbjct: 258 SLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLE 292 >gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii 37] gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas ingrahamii 37] Length = 509 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 25/229 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V+G+++DSR I F A++G +DG FI +++ GA V+ T + G ++ Sbjct: 23 PSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQVT 82 Query: 83 I----PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKT 136 I PVF V L+ LA R +IA+TG+ GKTT +L + + K Sbjct: 83 IKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGKQ 142 Query: 137 YACIGSYNNHI------GVPLTLARMPV----------DVDFGIFELGMSHLGEIRFLTH 180 A +G+ N + + TL + V ++ I E+ L + R Sbjct: 143 SAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGR--VS 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 V A+ T + HL +E AK +FE I +N DD Sbjct: 201 AVPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQRI-INADD 248 >gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes Clip81459] gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-064] gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 1816] Length = 491 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 42/371 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV V Sbjct: 26 IAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVIYVR 80 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D A+ LA ++ ITG+ GKTT ++ + + IG+ I Sbjct: 81 DSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKI 140 Query: 148 G---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 G P LTL D V + E+ L + R + +AV Sbjct: 141 GDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAVFMN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHALGIK 245 ++ HL +EE A+AK+ +F L + LN DD ++ + A Sbjct: 199 LSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA---- 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 255 HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFA 314 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++ AIK + +GR + Q F ++D Y P + ++VL I+ Sbjct: 315 LHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLETIAE 367 Query: 366 HGEGRRIAVLG 376 E R V+G Sbjct: 368 FAEKRVFVVVG 378 >gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 497 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 65/375 (17%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IA+ G+ GKTTT M+++ A + + T+ G N H+G L + D Sbjct: 142 IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 201 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P I+++T I P H+ + G +E+ L G Sbjct: 202 FLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGL 246 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 L DD E+L +G + + ++G S+NAD+++ ++Q Q + + G+ + Sbjct: 247 AVLCADD---EVLMELVPLVG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERI 302 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336 +V+ + G H A N L + D + AL+ F +G G+R+ L Q Sbjct: 303 DVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADF---QGAGRRFD-QLGQFIRPN 358 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386 G L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 359 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 415 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQS 439 +D+ +L +Y + G A AL RSI + S+T + L + Sbjct: 416 ---VDVLIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-EQLGEVLDQ 467 Query: 440 SLVDGDVVVVKSSNS 454 + DGD+++ + + S Sbjct: 468 IIQDGDLILAQGAGS 482 >gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] Length = 472 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 31/314 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIGSYNN-----HI 147 L++ A L + + I G+ GKT+T MLT+AL + + ++A G N H Sbjct: 102 LHRAQALAGLMAGHRVACIAGTHGKTSTTSMLTVALQNCRMDPSFAIGGDLNESGANAHH 161 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G + G+F + + + FLT+ P +AV+T + P HL + E Sbjct: 162 G------------EGGVF-VAEADESDGSFLTYT--PSVAVVTNVEPDHLDHHGTAEAYV 206 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC 266 ++ +E G + + DD L ++ A G++ Y S D ++ + Sbjct: 207 KVFSDFVGQIEPGGLLIVCADDEGAARLGEEAAAAGVRVRRYGRAASGEGDVRVLDYTPA 266 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + L G+ ++ G HMA N + L L A +D L+ F G Sbjct: 267 PDGGVVRIALDGEEHDLRVAVPGEHMALNAVAALLAGLELGAPLDGMAAGLAAFG---GV 323 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +R+ G + D+ Y +P + A + + + G GR + V + +Q Sbjct: 324 RRRFEFKGRAGDVRVYDD-YAHHPTEVAAQLRAVRTAA--GNGRVVVVF--QPHLYSRTQ 378 Query: 387 SFHIDLAEVLSLYN 400 +F + AE LSL + Sbjct: 379 TFAAEFAEALSLAD 392 >gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] Length = 491 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV Sbjct: 23 ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 78 YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P LTL D V + E+ L + R + +AV Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A+AK+ +F L + LN DD ++ + A Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ AIK + +GR + Q F ++D Y P + ++VL Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364 Query: 363 ISPHGEGRRIAVLG 376 I+ E R V+G Sbjct: 365 IAEFAEKRVFVVVG 378 >gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria monocytogenes str. Scott A] Length = 494 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV Sbjct: 26 ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 80 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 81 YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 140 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P LTL D V + E+ L + R + +AV Sbjct: 141 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A+AK+ +F L + LN DD ++ + A Sbjct: 199 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 258 ---HVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 314 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ AIK + +GR + Q F ++D Y P + ++VL Sbjct: 315 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 367 Query: 363 ISPHGEGRRIAVLG 376 I+ E R V+G Sbjct: 368 IAEFAEKRVFVVVG 381 >gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] Length = 480 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 155/370 (41%), Gaps = 37/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G +ID+R +AP F A +G +G DFI AVQ GA VV + G++ I Sbjct: 24 VSGFAIDNRKVAPGTVFGAFQGARMNGEDFIPAAVQAGAVAVVARPEARVE-GAIHI--- 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 D+ +LA +A+TG+ GKT+T E+ + A IG+ Sbjct: 80 AHDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVT 139 Query: 145 ---NHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + + LT P V F G+ G++H G ++ T + A Sbjct: 140 TSVDQVSTGLT---TPDIVTFLSNMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAF 196 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL ++ AK +F+G + G + DD + + + ++ G++ + Sbjct: 197 TNLSRDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVWADDEWSDKVIRRATKRGLR-VL 255 Query: 249 SFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S G A LR + Q +EV+++GK +V IG + A N L +V Sbjct: 256 SVGVQGQA---LRLANRTPTQLGQTLEVEVEGKPYKVSLPLIGAYQAANALTAAALVIAG 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 DV ++ L P GR +R G +D Y P ++AAI L PH Sbjct: 313 GEDVGKVLELLGRVQPVRGRLERA-VITRAGAPVYVD--YAHTPDGLRAAIEAL---RPH 366 Query: 367 GEGRRIAVLG 376 +GR I + G Sbjct: 367 TKGRLITLFG 376 >gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis Z2491] gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis Z2491] Length = 445 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGAPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum CMR15] Length = 483 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + D D Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|289550504|ref|YP_003471408.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|289180036|gb|ADC87281.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus lugdunensis HKU09-01] Length = 437 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 123/304 (40%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPQS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ RP A++T I H F +E++ A E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--RPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMANNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD L IY +G S D + + + +V + GK + Sbjct: 201 IAWGDDEHLRKLNVDI------PIYYYGLSDKDDVYANDIQITDKGTEFDVYINGKYYDH 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H QN L + I + DV +AL F G KR L+ Sbjct: 255 FLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETF----GGVKRRFNETKYDQQVLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + + LS++ H+ L Sbjct: 311 DD-YAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFAD--SLSKADHVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] Length = 482 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 16/144 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76 P+ V G+++DSR + P F A+ G PH DGHDF+ A+ +GA VV + Sbjct: 16 PEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALARGAVAVVGEKPL-- 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 +L +P V D AL LA K ++ +TGS GK+TT +L L + Sbjct: 74 ---ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGSKGKSTTASLLHHLLKRAQ 130 Query: 135 KTYACIGSYNNHIGVPLTLARMPV 158 A + + +G AR PV Sbjct: 131 GGSALLSTVGLRLG---EEARPPV 151 >gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] Length = 487 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 147/374 (39%), Gaps = 47/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ DSR + Q F A KG +GH FI A++KGA +VV + + + + Sbjct: 24 VQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGATVVVC--EDLPGLTHAEVTYV 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------------TIA 129 V + AL +A K ++I +TG+ GKTT +L TI Sbjct: 82 VVPNSQEALGVMAANWFDHPSKKLSLIGVTGTNGKTTVTSLLYALFTKAGYPSGLISTIK 141 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRF--LTHLVRPHI 186 + +K Y + + + L M + + E+ + ++R LT Sbjct: 142 ILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVSSHGIAQMRIKGLTF----EG 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHAL 242 A+ T ++ HL K +F+GL T +N DD + KAK + Sbjct: 198 AIFTNLSQDHLDYHKTFANYRDTKKLLFDGLSTTAFALVNSDDKNGLFMLQNTKAKKMSY 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K + ADF+ Q E + L+ EV +G A N+L Sbjct: 258 GLKGV--------ADFK----AQILENQFSGQLLKIDQQEVWTTLLGQFNAYNILAIYAT 305 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++L + ++ +S GR +Y + NQ ++D Y P ++ + + Q Sbjct: 306 ATLLGLNTLEVLQHISTLENVAGRF-QYFISKNQ-ITAIVD--YAHTPDALDNILETIGQ 361 Query: 363 ISPHGEGRRIAVLG 376 I E + I V+G Sbjct: 362 IRTKNE-KLITVVG 374 >gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] Length = 488 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVEFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKGLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] Length = 482 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 16/144 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76 P+ V G+++DSR + P F A+ G PH DGHDF+ A+ +GA VV + Sbjct: 16 PEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALARGAVAVVGERPL-- 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 +L +P V D AL LA K ++ +TGS GK+TT +L L + Sbjct: 74 ---ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGSKGKSTTASLLHHLLKRAQ 130 Query: 135 KTYACIGSYNNHIGVPLTLARMPV 158 A + + +G AR PV Sbjct: 131 GGSALLSTVGLRLG---EEARPPV 151 >gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] Length = 490 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 144/373 (38%), Gaps = 36/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 ++GI+ DSR P F A++G H DG +I A +GA V++ D G P Sbjct: 25 IHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQGAAAVLLEAD----PGFTPPPDA 80 Query: 85 -VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D AL ++A A R A I AITG+ GKT+T E L + IG+ Sbjct: 81 TYLVAADARAALARIARALTPRVPAHIAAITGTNGKTSTAEFLRQIWTVQALPAGTIGTL 140 Query: 144 NNHIGVPL----TLARMPVDVDF-----GIFELGMSHLG--------EIRFLTHLVRPHI 186 PL + P V + + G+ H+ E R L L P+ Sbjct: 141 GAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEHVAIEASSHGLEQRRLDGLA-PYA 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF---LNYDDSFFELLKAKSHALG 243 A + + HL E +AK +F+ + G I + DD+ L+A + G Sbjct: 200 AGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIAAFNADMDDATCAALRAIAARRG 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + +L + + V + E+ +G NML+ + Sbjct: 260 L--VLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREMEVPLVGRFQVDNMLLACAMA 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D A+ L H GR +R L+ G +D Y P +++ +L + Sbjct: 318 GRDEGAADHAVSLLPRLHGVRGRMERA-AVLDSGAAAYVD--YAHTPDAIE---RLLCSL 371 Query: 364 SPHGEGRRIAVLG 376 PH GR + V+G Sbjct: 372 RPHTPGRLVIVMG 384 >gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] Length = 488 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 147/382 (38%), Gaps = 58/382 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHD+ A +KGA +V ++ A +PV Sbjct: 24 ITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-----DVPVI 78 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 + AL L+ A + + +I ITG+ GKT+T M+ IG+ Sbjct: 79 IIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMY 138 Query: 144 ----------NNHIGVPLTLA---RMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPHI 186 N +TL R VD VD + E+ H+G + H I Sbjct: 139 TKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRV----HGCDYDI 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDD---SFFELLKA 237 A T + HL +EE AK+ +F L E LN DD ++F + + Sbjct: 195 AAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAYFAQVTS 254 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H L ++G +AD K + + ++ S +V +G N+L Sbjct: 255 -AHLL------TYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVL 307 Query: 298 M---TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 I A + I+ L K RG+ Q F ++D Y P S++ Sbjct: 308 TAAAIAIAADIPFATITEGIEGL-----KGVRGRFELVDAGQDFPVIVD--YAHTPDSLE 360 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 ++ ++ EG+ V+G Sbjct: 361 NVLNTCRGLT---EGKLFVVVG 379 >gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium roseum DSM 43021] gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium roseum DSM 43021] Length = 465 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 95 LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 + ++ +A RLR A +A+TG+ GKTT MLT L++ +G ++G P+ Sbjct: 88 IGEVELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAGHAALAVG----NVGTPVV 143 Query: 153 LARM-PVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 A P DV + F+L S + PH A + +AP HL +EE A Sbjct: 144 EAVTGPADVLAVELSSFQLHRSPS---------LAPHTAAVLNVAPDHLDWHGSLEEYAR 194 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 K EIF + GT+ N DD + L A Sbjct: 195 VKGEIF---TRAGTVVHNADDEWSARLAAP 221 >gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechocystis sp. PCC 6803] gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803] Length = 505 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 32/371 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-V 85 V G+S +S + P F + G DG +F A++ GA VV+ + + V Sbjct: 35 VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGECV 94 Query: 86 FGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 V D++ LA A T ++ +TG+ GKTTT ++ L+ +++ A +G+ Sbjct: 95 IAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTL 154 Query: 143 YNNHIGVPLTLAR-MPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIA 187 Y G T P D + + E+ L + R L A Sbjct: 155 YTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFA--CA 212 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL +E +AKA +F+ G +N DD + + L + L + + Sbjct: 213 VFTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDR---LPLDQV 269 Query: 248 YSFG-KSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y++ ADF + Q + V QG+ + +G N+L + Sbjct: 270 YTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGE-FPFLSPLVGQFNLANVLAAIASGLH 328 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D +K L F GR ++ + +Q ++D Y P S++ A+ P Sbjct: 329 LGLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVD--YAHTPDSLENALKAARPFIP 386 Query: 366 HGEGRRIAVLG 376 GR I + G Sbjct: 387 ---GRLICIFG 394 >gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 535 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 106/497 (21%), Positives = 196/497 (39%), Gaps = 74/497 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ S+ + F IKG DGH++ HA +GA +++V D + I + + V Sbjct: 29 IKKIAYHSKEVGADTLFVCIKGHQTDGHNYAKHAASQGATVIIVE-DFIEDIHVIQLKVS 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + L L+ +S I +T + GKTT M+ + + IG+ Sbjct: 88 DSREALAILSSNFFDHPSKS-MNIFGVTATNGKTTITYMIEEIFKASQLKSGLIGTILVK 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTH-----------LVRPH-----IAV 188 I + ++R+ + + H + R +TH L R + + Sbjct: 147 IDKEIEMSRLTTPESYDL----QQHFARMRDREITHVSMEVSSSALELKRVYNTDFDVVA 202 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I+P H+ + AKA + K T LN D+ L+ ++ A + Sbjct: 203 FMNISPEHIKLHESFDAYFDAKASLIRNASKASTAILNLDEPLLIPLEKETEA----QVI 258 Query: 249 SFG-KSKNADFQLRKWKQCSEQSWMEVQ-------LQGKSMEVVHHG-----IGYHMAQN 295 +FG ++K+ + + S V L GK++E+ +GYH N Sbjct: 259 TFGIENKSGTITVSDIRFSSGIPSFTVNIRKPFNTLSGKTIEITSFDLEMSVLGYHSIYN 318 Query: 296 MLMTL--GIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L L G+V+ L D+ IK +G +R++ ++ F + D N N + Sbjct: 319 ALTALVTGLVNDLPIEDIQRGIKNF------QGVERRFQVLYDKEFKVIDDLLLNQN--N 370 Query: 353 MKAAISVLSQISPHGEGRRIAVLGD-----MCEMGE-LSQSFH-IDLAEVLSLYNISHV- 404 + + + +S + + A+ G E+ E L++ FH + +A+++ SHV Sbjct: 371 IDSCMETISHLDYNELHLVHAIRGSNGPAHSTEIAESLTKWFHKMKIAKIILTTAPSHVN 430 Query: 405 --------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC- 455 L F LK I V + + +D LF L D++++ ++S Sbjct: 431 KIDEVTEEELDAF----LKVMHQNKIEVTFFKELDDTLLFGVEQLNVADILLISGAHSMD 486 Query: 456 -GFYRLINLLLEEFPAI 471 G + + LL E +P + Sbjct: 487 QGARKTLELLKEIYPQV 503 >gi|305432184|ref|ZP_07401348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Campylobacter coli JV20] gi|304444727|gb|EFM37376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Campylobacter coli JV20] Length = 475 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/316 (23%), Positives = 121/316 (38%), Gaps = 50/316 (15%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +S+ +F + L NK + + II IT S GKT+ K L L KTY Sbjct: 128 ISLKIFELFSNLYFKNKAKAKLQNNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTP 187 Query: 141 GSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 S N +G+ + + D I E G G+I +T + P I ++ I AHL Sbjct: 188 RSVNTLLGIIADINTNLSDDTQIYIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEY 247 Query: 200 FSGIEEIASAKAEIFEG--LEK----TGT------IFLNYDDSFFELLKAKSHALGIKTI 247 F IE K E LEK T T + L YDD + ++A L K Sbjct: 248 FKNIENTRKTKLEALNSKRLEKAFLHTSTQKSEDELILLYDDK-LQDIQASLQGLEFK-- 304 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + L+ K+ E +G AQN+ + + L Sbjct: 305 --------------------------INLENKTYEFKSQILGDFNAQNLCACILCANYLG 338 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ K + + E R + +++ +ID+ +N N M A+ ++ + Sbjct: 339 VKIEKIQKQVLKINSVEHRLQ----IISKEPKFIIDDGFNGNYKGMSAS----YKLCKNY 390 Query: 368 EGRRIAVLGDMCEMGE 383 +GR++ V + E+ + Sbjct: 391 KGRKVLVSPGIVEVDK 406 >gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis audaxviator MP104C] gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis audaxviator MP104C] Length = 455 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 31/290 (10%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVP 150 L + + + RL + IA+ G+ GKTTT ++ L IG N G Sbjct: 89 LPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTTSLVAFLLERTGLDPTVIIGGEMNGFG-- 146 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + G E ++ E L+ P I ++T + HL + ++ I A Sbjct: 147 --------NAKAGGGEYLVAEADESDGSFSLLHPSIVIVTNVEDDHLDYYRTVDAIRRAF 198 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QC--- 266 E + + G LNYDD F L+ +H L I ++G + +AD++L + C Sbjct: 199 REFIFKVPRDGVAVLNYDDPF---LRQMAHELPFPVI-TYGCAPDADYRLAGFHLNCAVS 254 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S + + +L G+ + G H N L + + L + +AL F R Sbjct: 255 SAEVYWRRELLGRFELTIP---GRHNLLNALAVVAVGRHLGLEFPEIARALRDF-----R 306 Query: 327 GKRYRCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 G R R L + + + Y +P +KA + Q P R IAV Sbjct: 307 GVRRRFELVGESRGVRVVDDYAHHPTEIKATLEAARQTRPK---RLIAVF 353 >gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae NCCP11945] gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2] gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 468 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 387 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 446 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + LLE Sbjct: 447 LNMGAGSIN--RVPSALLE 463 >gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Symbiobacterium thermophilum IAM 14863] gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium thermophilum IAM 14863] Length = 455 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 22/142 (15%) Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPL--TLARMP----VD 159 +A +I +TGS GKTTT ++ I ++ ++TY +IG PL + +P V Sbjct: 109 RAPVIGVTGSAGKTTTTTLIGEILRAAGRETY-----VGGNIGKPLIEQVEAIPSEAVVV 163 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 ++ F+L + H PHIAV+T ++P HL + +EE AK IF Sbjct: 164 LELSSFQLQLVHRS----------PHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSP 213 Query: 220 TGTIFLNYDDSFFELLKAKSHA 241 + LN DD A++ + Sbjct: 214 ADWLVLNADDPTVRAFAAEARS 235 >gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum GMI1000] gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase (udp-n-acetylmuramoyl-l-alanine synthetase) protein [Ralstonia solanacearum GMI1000] Length = 483 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + D D Sbjct: 386 GTVDALLLAEVYAAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 510 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/374 (22%), Positives = 149/374 (39%), Gaps = 38/374 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVASIGSLS 82 V+G+S DSR I AFF++ G + DG +I A+ GA +++ +T+ VA + + Sbjct: 22 VSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANGASVIITDSKYDTNDVAQV--VI 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +F + GA + I+ ITG+ GKTT M+ L++ IG+ Sbjct: 80 KDIFRFMSLFGA----KFYNYPDRELNIMGITGTNGKTTVTYMIESILANSGIECGVIGT 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPH-------------IA 187 N + A I+ + +S+ G I++L V H A Sbjct: 136 VNYRYKGKVIEANNTTPQSLDIYRIMRDISNNG-IKYLVMEVSSHALSLGRVYGIEFDTA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSHAL 242 V T + HL ++ AK+ +F+ L +N DD + L + Sbjct: 195 VFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCAIINVDDEYGRKLLKVGISA 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 IK +YS + ADF+ K ++ + + K + IG H N L L Sbjct: 255 EIK-LYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRARIRIKHIGVHNVYNALAALAA 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + A++ L+ GR ++ + GF ++D Y ++++ + L Sbjct: 314 AVCSEISFENAVEGLNNSSRVPGRLEKVN-TIGLGFEIVVD--YAHTDDALESVLRALKD 370 Query: 363 ISPHGEGRRIAVLG 376 ++P R I V G Sbjct: 371 LNPK---RIIIVFG 381 >gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina NCIMB 400] gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQADRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++VIT I H+ + G E++ + + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D E+++ +G + + ++G S+ AD Q + Q QS V+ GK ++++V + Sbjct: 234 D---EVIREIMPRIG-RQVVTYGFSEEADVQAINFAQNGHQSSFTVKRHGKDNVDIVLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343 G H N L + + S D ++AL+ F EG G+R++ G L+D Sbjct: 290 PGEHNVLNALAAIAVASEDDIDDSAIVQALAEF---EGIGRRFQHLGEFETPNGSVMLVD 346 Query: 344 ESYNANP----ASMKAAIS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P A++KAA + ++ PH R + D ++ LSQ +D Sbjct: 347 D-YGHHPSEVLATIKAARAGWPDKRLVMAYQPHRYSRTRDLYEDFVDV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y + G A AL RSI + + + D L + L GD+ Sbjct: 401 LLLDVYAAGEAPIPG----ADGRALCRSIRLRGQIDPIFIASPDQLAAVLPDVLQHGDLF 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 MTQGAGNIG 465 >gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont 6C6] Length = 475 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 +I +T S GKT+ K + LS + YA S N GV + + + + E+G Sbjct: 160 VIGVTASYGKTSIKNFIAHLLSKKYRVYATPRSVNTLGGVIRDINENLDEKIQIYVVEMG 219 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 G+I +T LV PH A++ I AH+ F +E I K EI Sbjct: 220 ARERGDILEITQLVNPHYAIVGQIGTAHIEYFKSLENIRDTKMEI 264 >gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ + + Sbjct: 22 NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYVLIEE 81 Query: 88 VDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + LG A N R K II +TG+ GKT++ M+ + I T IG+ Sbjct: 82 IRHKLGYIASNFYEWPQR---KLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136 Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 +G + + P +D IF+ + +I ++ V H A+ Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ +N DD++ Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNY 236 >gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996] gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996] Length = 469 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGSEQAPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ + L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGF---EGVGRRFQKYGEIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVV 447 Query: 448 V 448 + Sbjct: 448 L 448 >gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-23m63] gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile NAP08] gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile NAP07] gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile NAP08] gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile NAP07] Length = 450 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/388 (20%), Positives = 162/388 (41%), Gaps = 59/388 (15%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R IA++G+ GKT+T ML+ YA + P L + + G Sbjct: 98 MREYKNSIAVSGTHGKTSTTSMLSTIFE-----YADLD--------PTILVGGNLSMIGG 144 Query: 164 IFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 ++G S+ F+T P I+++ + HL FSGI+EI ++ + Sbjct: 145 NVKIGNSN----HFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFG 200 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWME 273 + L G +N DD + + A TI +G+ + D ++ S Sbjct: 201 KLLPPEGYFIINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFR 256 Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ QG+ + + G H N + + D++T K + ++ +G G+R+ Sbjct: 257 IEYQGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIY---KGVGRRFET 313 Query: 333 ALNQGFF--TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEM 381 +G++ L+ + Y +P +KA ++ ++ PH R ++L Sbjct: 314 ---KGYYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLL------ 364 Query: 382 GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439 GE S++F+ D + +Y H L + L ++ Y + + + +++ Sbjct: 365 GEFSEAFYAADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRE 424 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ D D+V+ ++ + Y++ +LL+E+ Sbjct: 425 NVKDNDLVI--TAGAGPIYKVADLLVEK 450 >gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D11] gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ + + Sbjct: 22 NGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNVSYVLIEE 81 Query: 88 VDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + LG A N R K II +TG+ GKT++ M+ + I T IG+ Sbjct: 82 IRHKLGYIASNFYEWPQR---KLKIIGVTGTNGKTSSTYMIEKLMGDIPVTR--IGTIEY 136 Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 +G + + P +D IF+ + +I ++ V H A+ Sbjct: 137 KVGDEVFDAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLELGRVDVIDFDCALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ +N DD++ Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNY 236 >gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 156/372 (41%), Gaps = 36/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ ++ DSR +A F A+ G DG F A Q+GA V A + ++ Sbjct: 21 VSDLTADSRQVATGTVFVAVPGTKADGRRFAAQAAQRGAAAVAGEGTRPADLPD-AVAWI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 V D AL A T++A+TG+ GK++ + + L+ + + A +G+ Sbjct: 80 PVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFVRQILARLGRDAASLGTVGIV 139 Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 + + + TLAR+ + G+ +L M SH E R L VR A Sbjct: 140 TGRGAQYGSLTTPDPVTLHRTLARLAAE---GVTDLAMEASSHGIEQRRLDG-VRLDAAG 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL + IEE +AK +F L G +N D ++ E + A + A G + + Sbjct: 196 FTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAYAERVIAAAEAAG-RPV 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL- 306 + G+ D ++ + V G++ ++ +G +N L+ G+ Sbjct: 255 RTVGRGGR-DLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQVENALVAAGLALATP 313 Query: 307 --TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 AD D AL GR +R A +G L+D Y P +++ SVL+ + Sbjct: 314 AGAADPDGVFAALDHLTGVPGRMERIGEA--RGGLCLVD--YAHKPEALE---SVLTALR 366 Query: 365 PHGEGRRIAVLG 376 P GR +AV G Sbjct: 367 PFATGRLVAVFG 378 >gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] Length = 496 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/360 (24%), Positives = 141/360 (39%), Gaps = 35/360 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ D+R + P F AI+G DGH FI AV KGA +VV G + V Sbjct: 23 VTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKGAAALVVEDKAKIPEGYEGV-VV 81 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L+ LA + + +TG+ GKT+ M L+ K IG+ N Sbjct: 82 QVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSVTYMTEAILNHGKIPTGVIGTVN 141 Query: 145 NHIGVPLTLARMPV-DVDF-----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 +H+G + + M D F G + M SH + R + + P VI Sbjct: 142 HHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDSV--PFNTVI 199 Query: 190 -TTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL + +E AK +F L ++ +N D F L+ A+ Sbjct: 200 FTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVNTADKFGRRLRVADPAV- 258 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++++G+ K++D + K + +V EV G H N L LG Sbjct: 259 ---LWTYGE-KDSDIRYEILKMDFALTHFKVWTPVGEGEVRLPMSGTHNVMNALAALGAG 314 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ I+AL F GR + N F Y P +++ + L+++ Sbjct: 315 LSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFV----DYAHTPDALENVLMALTKV 370 >gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] Length = 497 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 30/370 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIP 84 V GIS +S S +E F + G DG +F A++ GA VV++ I L Sbjct: 27 VKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQSAIKAGAVAVVISPQAAIKFPINDLHC- 85 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V+DV+ +++A A + +I +TG+ GKTTT ++ L+ KK A IG+ Sbjct: 86 VIIVEDVILTASEIATAFYSYPSEDIKMIGVTGTNGKTTTTHLIEYFLTECKKNTALIGT 145 Query: 143 -YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187 Y+ G T + P + +L + + + + V H ++ Sbjct: 146 LYSRWNGFKQTSIHTTPFSPELQA-QLSQAVIDKNEYCVIEVSSHALVQGRVKGCGFNVS 204 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK +F G +N DDS+ E L LG + + Sbjct: 205 IFTNLTQDHLDFHKNLENYFLAKQLLFSPEYLQGKAVVNIDDSYGERL---IQYLGPQKV 261 Query: 248 YSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 YS+ ++ ADF ++ ++ G + E +G N+L + + L Sbjct: 262 YSYSIENTMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAIATLFHL 321 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D++T I L F GR ++ + Q ++D Y P S++ ++L P Sbjct: 322 NIDLETVINKLPQFPGVPGRVEKIEVSEVQDISVIVD--YAHTPDSLE---NLLKATRPF 376 Query: 367 GEGRRIAVLG 376 G+ I V G Sbjct: 377 ISGKVICVFG 386 >gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] Length = 481 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 155/371 (41%), Gaps = 36/371 (9%) Query: 24 QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + FV G I DSR I + F A+ G DGH++I AV GA +V+ + ++ Sbjct: 17 KDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMVIAEKKDI-TVADKD 75 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + VD++ L +A + K II ITG+ GKTT+ +L L + + I Sbjct: 76 VTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYILDSMLENTSRI-GTI 134 Query: 141 GS--YNNHIGVP------LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 G + I P L L +M V++ I E+ SH EI + L + Sbjct: 135 GYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVS-SHALEIGRVDMLEFDSV- 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E +AK ++F L +N DDS+ E + + K+ Sbjct: 193 MFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAVNIDDSYGERIYNSN-----KSY 247 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S+ K++D + + + + V QG +G + N+L +G++ L Sbjct: 248 KSYSIIKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLYNLLGCIGVLLNLG 307 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISP 365 D+ I+ + GR + +N+G F ++D ++ N ++L + Sbjct: 308 FDIRDIIERVKRVGYVPGRFE----LVNEGQDFRVIVDYAHTDNGLE-----NILETVRK 358 Query: 366 HGEGRRIAVLG 376 E R I + G Sbjct: 359 ITEKRVITIFG 369 >gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] Length = 491 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 42/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F I G DGH F AV+ GA ++ + +SIPV Sbjct: 23 ISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAIIAEKQL-----DVSIPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 78 YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG P LTL D V + E+ L + R + +AV Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A+AK+ +F L + LN DD ++ + A Sbjct: 196 FMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAA- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ADF+ + S S +++ + + IG N+L + Sbjct: 255 ---HVITFGIKQQADFKASNIRITSHGSAFDLRTPIGNFTLKIKMIGNFSVYNVLAAIAT 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ AIK + +GR + Q F ++D Y P + ++VL Sbjct: 312 SFALHIPMEKAIKTVESIPGVKGRFELVHAG--QEFPVIVD--YAHTPDGL---LNVLET 364 Query: 363 ISPHGEGRRIAVLG 376 I+ E R V+G Sbjct: 365 IAEFAEKRVFVVVG 378 >gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis ATCC 25196] gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 522 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 49/385 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++T +A + + T+ IG G L R Sbjct: 127 LAELLRLRQG---IAIAGTHGKTTTTSLITSVLAEAGMDPTFV-IGGRLEAAGSHAKLGR 182 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL HL +P +AV+T I H+ + ++ A + Sbjct: 183 -------GEFIVVEADESDASFL-HL-QPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFV 233 Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---- 269 + L G L DD+ E++ A + K + ++G S+ A + + Q Sbjct: 234 QHLPFYGMAVLCVDDAHVLEIMPAIT-----KPVTTYGLSETAQVRAADIRHSEGQMHFT 288 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + V + + +++V + G H QN L + + + + + ++AL+ F + R +R Sbjct: 289 ALIGVNGKTRKLKIVLNLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQR 348 Query: 330 Y-RCAL------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 Y L G FTLID+ Y +P M A I+ P GRR+ VL Sbjct: 349 YGEIPLTDPETGRNGSFTLIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRY 403 Query: 383 ELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMD 431 ++ D +VLS ++ + V+ +G + D +L RS+ V + E +D Sbjct: 404 TRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPIIAADSKSLARSLRVLGKVEPIFVERVD 463 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCG 456 L I S D DVV+V + S G Sbjct: 464 ELEEAIHSIARDKDVVLVMGAGSVG 488 >gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16] gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16] Length = 434 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 141/357 (39%), Gaps = 60/357 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 LS+PV LG L SK T IA+TGS GKTTT +L + T Sbjct: 82 QLSVPVIRYHRFLG---------ELASKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG G P + + +FE E R FL++ P A+IT I H Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIITNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F+ I+++ SA ++ + ++K I DD + + ++AK I +G + D Sbjct: 177 DYFANIDDVFSAFQQMAQQVKK--GIVACGDDPYLQNIQAKV------PILFYGLGEEND 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 FQ R + +E + +V ++ S + G H N L + + D T Sbjct: 229 FQARNIVKTTEGTAFDVFVRNTFFASFTIPR--FGTHNVLNALAVIALCHYEGIDAGTIA 286 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------IS 364 L F +G +R+ G LID+ Y +P + A + Q Sbjct: 287 ARLQTF---QGVKRRF-SEKTVGRQVLIDD-YAHHPREIMATLEAARQKYPGREVVAIFQ 341 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 PH R L + E L Q+ ++ L ++ H LS + L++ +PRS Sbjct: 342 PHTYTRTQTFLSEFAE--SLQQADYVYLCDIFGSAREHHGKLS---IRDLQEKIPRS 393 >gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora bispora DSM 43833] gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora bispora DSM 43833] Length = 462 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 23/167 (13%) Query: 95 LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 + ++ +A RLR A +A+TG+ GKTT MLT L++ +G ++GVP+ Sbjct: 94 IGEVELAWRLRGDGAAPWLALTGTNGKTTAVRMLTSMLTAAGLKALAVG----NVGVPIV 149 Query: 153 LA-RMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 A R P DV + F+L S + P A + +AP H+ +EE A+ Sbjct: 150 EAVREPYDVLAVELSSFQLHWSSG---------IAPLAAAVLNVAPDHIDWHGSLEEYAA 200 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSK 254 AKA+IF T+ N DD L A G + + ++ G + Sbjct: 201 AKAKIF---RNAPTVIYNADDERCARLAEPYRAAGRRVVGFTLGAPR 244 >gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] Length = 505 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 29/228 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I++DSR + F A+ G DG FI A++ GA ++ D +A+ G +++ Sbjct: 32 IDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIANEGDIALKDG 91 Query: 87 GVDDVLGALN-KL-AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L LN KL A+A R K + A+TG+ GKTT ++L + + + Sbjct: 92 VYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWANLVGYKAGVM 151 Query: 141 GSYNNHIGVPL---------------TLARM-PVDVDFGIFELGMSHL--GEIRFLTHLV 182 G+ N + V L TLA++ DF E+ L G IR L H Sbjct: 152 GTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGLVQGRIRDL-HF- 209 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ T ++ HL ++ A AK +F ++G +N DD+ Sbjct: 210 --KASIFTNLSRDHLDYHGNMQNYADAKKSLFTE-HQSGIAIINADDA 254 >gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 488 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/378 (22%), Positives = 151/378 (39%), Gaps = 47/378 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G+ +DSR + + F A+ G +DG FI AV GA +V + + +L +P+ Sbjct: 21 MISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVAGFVEALQVPL 80 Query: 86 FGVDDVLGALNKLAVAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + ++ +A+R + ++ I +TG+ GKTTT ++ + K+ IG Sbjct: 81 VEMPEL--QQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKSCGVIG 138 Query: 142 SY-----------NNHIGVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + N ++L + D D G++ M S ++ + V A Sbjct: 139 TLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNGVGFETA 198 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 V T ++ HL +E AK +F EGL+ +N DD F + G++ Sbjct: 199 VFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKHA---LVNLDDEFGARV-CDVVEPGVQ 254 Query: 246 TI-YSFGKSK------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I YS + ADF + W + E V G N+ Sbjct: 255 LITYSVSNPQADVFVEQADFSAGRVTGVLRTPW-------GTGEFVSPLPGDFNLANLAA 307 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + V++ + +K +S P GR + L G +ID Y P +++ Sbjct: 308 AVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSLSNTL--GLQVIID--YAHTPDALE---Q 360 Query: 359 VLSQISPHGEGRRIAVLG 376 VL+ + H +G+ + V G Sbjct: 361 VLTALRLHVDGQLVVVFG 378 >gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] Length = 488 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 +++DSR+ F AIKG DG +I A+Q GA V+ D + +P+ Sbjct: 21 MTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQVRYEQQVPL 80 Query: 86 FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA + + T++ +TG+ GKTTT ++L + T A +G+ Sbjct: 81 IAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGHTSAVMGTI 140 Query: 144 NN---------------HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N + + +LA DF E+ SH G ++ V A Sbjct: 141 GNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVS-SH-GLVQHRVEAVHFSAA 198 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AK +F L+ I D L A+ + Sbjct: 199 VFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHIIDADDPVGAAWLAEMPEAVAV--- 255 Query: 248 YSFGKSKNADFQLR--KW 263 S NADF R KW Sbjct: 256 -----SANADFAPRQAKW 268 >gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] Length = 521 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 118/282 (41%), Gaps = 47/282 (16%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74 G + +VP + +DSR + + F A+ G DG FI +AV++GA V V D Sbjct: 18 GKAASLVP----GSLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQGAAAVFVEADKE 73 Query: 75 ---VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V IG +PV ++ + L++LA A + ++ ITG+ GKTT +L Sbjct: 74 WQGVHWIG--EVPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTNGKTTCSLLLAQL 131 Query: 130 LSSI--KKTYACIGSY-----NNHIGVPLT-----------LARMPVDVDFGIFEL--GM 169 L+ + + A IG+ + H P+ PV + + +L G Sbjct: 132 LAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVALQRILRQLRTGG 191 Query: 170 SHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEK 219 + I +H ++ A+ T + HL + AKAE+ GL+ Sbjct: 192 ASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKAKAELLFMPGLKH 251 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 N DD++ + L AK+ A G+ I F + AD LR Sbjct: 252 A---LFNMDDAWVKALAAKTPA-GVSAI-GFSLQEPADVYLR 288 >gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus thermodenitrificans NG80-2] gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus thermodenitrificans NG80-2] Length = 434 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 141/357 (39%), Gaps = 60/357 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 LS+PV LG L SK T IA+TGS GKTTT +L + T Sbjct: 82 QLSVPVIRYHRFLG---------ELASKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG G P + + +FE E R FL++ P A+IT I H Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIITNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F+ I+++ SA ++ + ++K I DD + + ++AK I +G + D Sbjct: 177 DYFANIDDVFSAFQQMAQQVKK--GIVACGDDPYLQNIQAKV------PILFYGLGEEND 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 FQ R + +E + +V ++ S + G H N L + + D T Sbjct: 229 FQARNIVKTTEGTAFDVFVRNTFFASFTIPR--FGTHNVLNALAVIALCHYEGIDAGTIA 286 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ----------IS 364 L F +G +R+ G LID+ Y +P + A + Q Sbjct: 287 ARLQTF---QGVKRRF-TEKTVGRQVLIDD-YAHHPREIMATLEAARQKYPGREVVAIFQ 341 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 PH R L + E L Q+ ++ L ++ H LS + L++ +PRS Sbjct: 342 PHTYTRTQTFLSEFAE--SLQQADYVYLCDIFGSAREHHGKLS---IRDLQEKIPRS 393 >gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM 6724] gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM 6724] Length = 464 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 51/293 (17%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +IP+ D+L L K K +II + G+ GKTTT M+ + L Sbjct: 87 NIPILHRSDLLADLTK--------EKKSII-VGGAHGKTTTTSMIALVLE---------- 127 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH----------LVRPHIAVITT 191 NN I P L ++ D G G + LG +L + P+I VIT Sbjct: 128 --NNKID-PTILVGGELE-DIG----GNAKLGNGEYLVAEGDESDGSILKLDPYILVITN 179 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 I HL + +E+I ++ E + K G LN D E ++ + K Y++G Sbjct: 180 IDNDHLDYYKSLEKIKDTFLKVIEKVPKGGFAVLNLD---CENVRDIIRKIKNKEYYTYG 236 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADV 310 S NADF+ S +V + + + V + G H N L + + IL D Sbjct: 237 FS-NADFKADNIVLNLSGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSAIAVSKILGLDF 295 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAISVL 360 +T KAL F +G + R L +G L+ + Y +P +KA + L Sbjct: 296 ETTTKALERF-----QGVQRRIQL-KGIIEDDILVFDDYGHHPTEIKATLETL 342 >gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] Length = 487 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 145/372 (38%), Gaps = 43/372 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ DSR + + F AIKG DGHD+I AV +GA ++ T + S I Sbjct: 24 IRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAIAIICET--IPSEIINGITYI 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML---------------TIA 129 V+D AL +A ++ ++ +TG+ GKTT +L T+ Sbjct: 82 QVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIATLLYNLFMAAGYETGLLSTVK 141 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + K+ Y + + + + L M VD + +S G + T + + Sbjct: 142 IMVGKQQYKATHTTPDSLTINRYLREM-VDAGVSYCFMEVSSHGIHQKRTEGLTFAGGIF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL +E K + F+ L KT +N DD ++ + A Sbjct: 201 TNLSHDHLDYHKDFKEYRDVKKKFFDQLSKTAFALVNADDKNGMVMLQNTSA-------- 252 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIVS 304 K + L+ Q +E QLQG E+ IG A N+L Sbjct: 253 ----KKVTYALKSMADHKAQ-ILENQLQGLLLKLDGQELWVKLIGNFNAYNVLAIYATAE 307 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L + ++ +S +GR + + N ++D Y P ++K + ++ I Sbjct: 308 LLGLETIETLQLISTLESVDGRFQYFIS--NTKVTAVVD--YAHTPDALKNVLETINTIR 363 Query: 365 PHGEGRRIAVLG 376 G + I V+G Sbjct: 364 T-GNEQLITVVG 374 >gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. C300] gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. C300] Length = 450 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 21/221 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279 + LN++ + L +K+ A T+ F + D L + C EV + Sbjct: 218 DFLVLNFNQDLAKELASKTQA----TVVPFSTQEKVDGAYLEDGQLCFRG---EVVMAAS 270 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L + + + D T + LS F Sbjct: 271 EIGVP----GSHNVENALAAIAVAKLRGVDNQTIKETLSAF 307 >gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] Length = 494 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 98/392 (25%), Positives = 158/392 (40%), Gaps = 47/392 (11%) Query: 9 DLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +LLQ ++ +IG Q V I+ SR I P FFAIKG H DGH FI + + G Sbjct: 5 ELLQGVEVLQTIGDTSQE-VGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQ-QGK 62 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTT 121 V+V D+ ++ + V D A+ ++A + +LR ++ +TG+ GKTT Sbjct: 63 VLVVEDLPEALAE-GVTYVQVTDTSRAMGQIAAHFYGHPSEQLR----LVGVTGTNGKTT 117 Query: 122 TKEM---------LTIALSSIKKTYACIGSYNNHIGVP--LTLAR-MPVDVDFGIFELGM 169 + + L S Y H P LTL + + V G+ M Sbjct: 118 IASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFM 177 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH + + LV V T + HL + K + F+ L KT N Sbjct: 178 EVSSHGIALHRIEGLVFAG-GVFTNLTQDHLDFHETFAQYRDTKKKFFDHLPKTAFALTN 236 Query: 227 YDDS--FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +D + L +H K+ Y+ G++ ADF+ Q E ++ + L+ + EV Sbjct: 237 IEDKNGAYMLQNTSAH----KSTYALGRA--ADFK----GQLLESTFAGMTLRVGNHEVW 286 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N+L +L + + +S GR + + G ++D Sbjct: 287 TSLIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQYFVSP--SGVTVIVD- 343 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ I + I + R I V+G Sbjct: 344 -YAHTPDALQNVIETILDIKDPSQ-RLITVVG 373 >gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Acidovorax ebreus TPSY] gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY] Length = 501 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 98/411 (23%), Positives = 153/411 (37%), Gaps = 58/411 (14%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L T L +A+ + Q + DSR I P + F A G DG + A Sbjct: 1 MNALHTLTTLQEAVD-----WLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATII 111 V +GA +V + V P D + AL L A + + ++ Sbjct: 56 VARGAAACLVECEGVE-------PFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVL 108 Query: 112 AITGSVGKTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLARM------PV 158 A+TG+ GKT+T L AL+ + K A +G+ +GVP L PV Sbjct: 109 AVTGTNGKTSTAWWLADALNQLSKEELPALAGCALVGTLG--MGVPPALQTTGMTTPDPV 166 Query: 159 DVD--FGIF-ELG-------MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + F F E G S +G R H+A+ T HL G+ Sbjct: 167 RLQRAFAQFAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQ 226 Query: 209 AKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK +F+ GL + +N DD L A+ + ++S A Q + Sbjct: 227 AKRALFDWPGLRAS---VVNVDDPQGAALHAELQGSDLD-LWSVSLQGPARLQAKHIVHT 282 Query: 267 SEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 V +G EV+ IG + N+L + + L + A++A + P G Sbjct: 283 GAGLAFTV-AEGAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPG 341 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 R ++ A L+ Y P ++ A++ L ++ GR V G Sbjct: 342 RMEQLAAAGQ----PLVAVDYAHTPDALHQALAALKPVAAQRGGRLWCVFG 388 >gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] Length = 477 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 29/357 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++++S+ + F AI G +DG D+I A++ A V+ + + + ++P FG++ Sbjct: 15 LTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESANYSKNKAWNVPSFGIE 74 Query: 90 DVLGALN-KLAVAARL-----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + LN K+A A L +I +TG+ GKT+ L SS+ ++ IG+ Sbjct: 75 N----LNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIGTL 130 Query: 144 NNHIG--------VPLTLARMPVDVDF---GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 + P T+A + DF GI M SH + + ++V I V+ Sbjct: 131 GSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFD-IKVL 189 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL + K + F E LN DD + L + K + + Sbjct: 190 TNVTRDHLDYHKTLANYQKIKKQFFSDGE-CKNFILNIDDCIGQELLMEVD-WSEKNLTT 247 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + AD + + ++ + K+ + + G H N+L +G + Sbjct: 248 YAIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFS 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +D IKA+ + GR + + + ++D Y P ++K + L IS + Sbjct: 308 IDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLD--YAHTPDALKNVLQSLRAISDN 362 >gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] Length = 493 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/380 (22%), Positives = 155/380 (40%), Gaps = 49/380 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83 V+ + +DSR + P F A+ G DG FI A+++GA + V + G++ I Sbjct: 24 LVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIID 83 Query: 84 --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV +D + L+ +A +I +TG+ GKTT +++ L + A +G Sbjct: 84 DVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAVMG 143 Query: 142 SYNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHL--GEIRFLTHLVR 183 + N + + TL+ + + E+ L G ++ L+ Sbjct: 144 TTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAA- 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHAL 242 V T ++ HL +EE A+AK +F + I +N DD ++ S+A+ Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKRAI-INVDDEVGHQWASQLSNAI 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGK--SMEVVHHGIGYHMAQNM 296 I N +F+ W +E S+ E ++ GK S E+ IG A N+ Sbjct: 259 AISL------KPNTEFESAIW--ATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNL 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ + L + ++ P GR + ++ ++D Y P +++ A Sbjct: 311 MLAFATLLSLGIEKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKA 366 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L H EG+ A+ G Sbjct: 367 LQAL---RVHCEGQLWAIFG 383 >gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus cristatus ATCC 51100] gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus cristatus ATCC 51100] Length = 455 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 111 AYLISDAPIIGITGSNGKTTTTTMIAEVLTAGGQN----GLLSGNIGFPASQVAQDASET 166 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL EE +AK I + + + Sbjct: 167 DTLVMELSSFQLMGIEAF----HPEIAVITNLMPTHLDYHGSFEEYVAAKWNIQKNMTAS 222 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L K+ A Sbjct: 223 DYVVLNFNQDLAKELAKKTAA 243 >gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 469 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 27/296 (9%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +L PV G ++L L ++ +AI GS GKTTT ++ L + Sbjct: 87 ALGTPVIGRAEMLAELMRVKYG---------VAIAGSHGKTTTTSLVATVLRA------- 130 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 + + V +A + + G +L ++ E + P IAV+T I P HL + Sbjct: 131 -AGLDPTVVVGGKMAALGTNARLGAGDLLVAEADESDGSFLRLTPTIAVVTNIDPEHLDH 189 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + E I A E + G L D + L + + ++G S +D+ Sbjct: 190 YGTHERIKDAFVEFAARVPFYGLAVLCLDHPHVQDLLPRIP----RRHVTYGVSPQSDYS 245 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 R + ++ +G+ + + G H N L T+ + L +D +AL+ Sbjct: 246 ARGIQFRGLETSFNAYRRGEPLGGFTVKMPGAHNVLNCLATIAVADELEVPLDVTKQALA 305 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 F G +R+ + G T+ID+ Y +PA ++A I + P GE R+ V Sbjct: 306 TFG---GVARRFTVVGSIGGVTMIDD-YGHHPAEIRATIDAARRAFP-GEDHRVVV 356 >gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase [Aromatoleum aromaticum EbN1] gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase [Aromatoleum aromaticum EbN1] Length = 502 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 24/322 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI+ DSR + P E F A G DG ++ A+++GA V+ + + +LS+P Sbjct: 21 HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDSDGMRLEALSVPALP 80 Query: 88 VDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143 V + LG + SK + +TG+ GKTT + L AL+ + IG+ Sbjct: 81 VSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIGTLGC 140 Query: 144 ---------NNHIGVPLTLARMP---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 N L + RM V G + +S +G + + V +AV T Sbjct: 141 GFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVAVFTN 200 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI--YS 249 + HL S +E A AKA +F+ L G +N+DD F + A G+ I Sbjct: 201 LTRDHLDYHSSMESYAVAKARLFD-LPGIGAAVINFDDDFGLAQARRLAASGMPVIGYTR 259 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIVS 304 F + +A R SEQ+ + HH + M N++ +G + Sbjct: 260 FVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAVIGSLL 319 Query: 305 ILTADVDTAIKALSVFHPKEGR 326 + +D ++++S P GR Sbjct: 320 VRDVPMDDIVRSVSRLTPPAGR 341 >gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae 35/02] gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI18] gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19] gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11] gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID18] gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1] gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID24-1] gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID332] gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291] gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19] gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11] gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18] gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1] gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332] gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2] gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62] gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria gonorrhoeae FA 1090] gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae NCCP11945] gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291] gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19] gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11] gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18] gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1] gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332] gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2] gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62] Length = 506 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + LLE Sbjct: 485 LNMGAGSIN--RVPSALLE 501 >gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114] gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114] Length = 469 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDVV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + L+E Sbjct: 448 LNMGAGSIN--RVPSALVE 464 >gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 535 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 105/495 (21%), Positives = 201/495 (40%), Gaps = 70/495 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I+ S+ + F IKG DGH++ HAV +GA +++V + + L + V Sbjct: 29 INKITYHSKEVETDTLFVCIKGHQTDGHNYAKHAVSQGATVIIVE-QFIEDLDVLQLKVS 87 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +VL L+ +S ++ +T + GKTT M + + IG+ Sbjct: 88 NSREVLAILSSNFFDQPSKS-MSLFGVTATNGKTTITYMTEEIFKAYQLKSGIIGTIVVK 146 Query: 147 IGVPLTLARM--PVDVDFGIF-----ELGMSHLG--------EIRFLTHLVRPHIAVITT 191 I + ++R+ P D + + ++H+ E++ + H + T Sbjct: 147 IDKEIEMSRLTTPESYDLQQYFAKMRDQEITHVSMEVSSSALELKRVYH-TDFDVVAFTN 205 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 I+P H+ E AKA + K T LN D+ L ++ A + +FG Sbjct: 206 ISPEHIQLHDSFEAYFDAKASLIRNASKMSTAILNLDEQLLIPLAEETAA----QVVTFG 261 Query: 252 -KSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGI-----GYHMAQNMLM 298 ++K+ + + S +V +Q G+ +E + GYH N L Sbjct: 262 IENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSGERIEPTSFDLELSIPGYHSIYNALT 321 Query: 299 TL--GIVSILTAD-VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L G+V+ + + V IK G +R++ ++ F + D N N ++ + Sbjct: 322 ALVTGLVNDIPLEYVQRGIKNF------RGVERRFQILYDKEFKVIDDLLLNQN--NIDS 373 Query: 356 AISVLSQISPHGEGRRIAVL------GDMCEMGE-LSQSFH-IDLAEVLSLYNISHV--- 404 + ++ + + E + L E+ E L++ FH + +++++ SHV Sbjct: 374 CMETINHLD-YNELHLVHALRGSNGPAHSTEIAESLAKWFHELKISKIILTTASSHVAKK 432 Query: 405 ------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--G 456 L+ F LK +I V +S +D F L + DV+++ ++S G Sbjct: 433 DAVTDEELAAF----LKVMKQSNIEVTFSTELDDALRFGVERLNEEDVLLISGAHSMDQG 488 Query: 457 FYRLINLLLEEFPAI 471 + + LL E +P + Sbjct: 489 ARKTLELLKEIYPTV 503 >gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus kaustophilus HTA426] gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Geobacillus kaustophilus HTA426] Length = 489 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 41/360 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR +A FF +KG DGHDF AV +GA +V + S+ +PV V Sbjct: 26 LEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPL-----SVDVPVVLVS 80 Query: 90 DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134 D A+ LA A R + +I +I + + T K+ I IK Sbjct: 81 DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIIEQIARKTGKKTGLIGTVHIKV 140 Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++Y + + + T +M VD V+F E+ L + R H +AV T Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244 + HL +EE +AK +F L + LN+DD + K + A Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I ++G + +D + + + + S V +G N+L Sbjct: 255 -PIVTYGMREKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T AL+ P GR + Q F ++D Y P S++ A+ + Q++ Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369 >gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7] gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7] Length = 488 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D+ + + +G + + ++G S +AD Q + Q Q V+ +GK ++++ + Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ + G A AL RSI + + + D L + L +GD++ Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 499 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/357 (22%), Positives = 150/357 (42%), Gaps = 27/357 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q V I DSR + F A++G H DG D+I A+ G ++V S+ S + Sbjct: 31 QCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESL-SDEV 89 Query: 84 PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKT 136 V D A+ LA R + TI+ +TG+ GKTTT + + + + + Sbjct: 90 AWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFS 149 Query: 137 YACI----GSYNNHIGVP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 CI Y P L L R+ D VD G L M S ++ + + +A Sbjct: 150 TVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALA 209 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL ++ +AK +F+ L +N DD ++ A + Sbjct: 210 LFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSPDAYALVNADDRNGSVMVQNCAA----HL 265 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +++ +AD+ + Q + S + L + +E+ +G + A N+ G+ +L Sbjct: 266 HTYAMRSHADYMAQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARLLL 321 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D+D ++ + + G+ A +G+ ++D Y P +++ + +S+++ Sbjct: 322 PDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376 >gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum CFBP2957] gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum CFBP2957] Length = 483 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P GRR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + D D Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parasanguinis F0405] gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parasanguinis F0405] Length = 449 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 23/222 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P H+ E +AK + + + + Sbjct: 162 DVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217 Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 I LN++ + L K K+ L T+ + D L K+K EV ++ Sbjct: 218 DVIVLNFNQDLAKELATKTKARVLPFSTVEKVDGAYLED-GLLKFKG-------EVVMRA 269 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + + + + LS F Sbjct: 270 DELGVP----GSHNVENALATIAVAKVRGVENEVIKETLSAF 307 >gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Haemophilus influenzae 10810] Length = 488 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 36/263 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87 +DSR + + F AIKG DG+ FI A+ GA VV T++ + +++ +PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIRNVPVVK 83 Query: 88 VDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ N Sbjct: 84 YYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN 143 Query: 146 HIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITT 191 + + A+ + + F+ + I +H + H A+ T Sbjct: 144 GLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTN 203 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSF 250 + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV------ 256 Query: 251 GKSKNADFQLRKWKQCSEQSWME 273 S NADF++ WM+ Sbjct: 257 --SMNADFKV------GSHQWMK 271 >gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis ATCC 49296] gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sanguinis ATCC 49296] Length = 450 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKDLASKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAASE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSSF 307 >gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM 20745] gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM 20745] Length = 473 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 115/274 (41%), Gaps = 20/274 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL 153 + + A+ RL + +A+ G+ GK+TT ML +AL + + +G+ +G T Sbjct: 102 IKRAALLGRLCDERVCLAVAGTHGKSTTSGMLALALVHAGEDPSFAVGAVVKELG---TN 158 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 AR G F + + + FL + P +AV+T I H F E + A Sbjct: 159 ARP----GAGPFFVAEADEYDYSFL--WLHPDVAVVTNIEHDHPDLFPSRESVLEAFTRF 212 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSW 271 G+ GT+ ++ DD L A+ LG + + +FG NAD+ + + ++ Sbjct: 213 VSGMRPDGTLVVSADDPGCRDLLAR---LGDRRPRVVTFGSDPNADWSIVRDEETGSGDL 269 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + G+++ + G+H N L L + + L+ F G G+R+ Sbjct: 270 VRAP-GGRTLRLRLAVPGWHNRLNALAALAAGEAAGVAPERLLPGLAAFG---GVGRRFE 325 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 T++D+ Y +P ++A I + P Sbjct: 326 VRGQARGVTVVDD-YAHHPTEIRATIEAARERYP 358 >gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 463 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 13/151 (8%) Query: 82 SIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 ++PV + +D + + ++ VA R+ SKA II ITGS GKTTT ++ L + + Sbjct: 86 ALPVQWAIDRHIEIVTEVEVAYRM-SKAPIIGITGSNGKTTTTTLVGKMLEEAELSPVVA 144 Query: 141 GSYNNHIGVPLTLARMPV-DVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLS 198 G +IG L+ A + + D + EL L G F RPHIA + + HL Sbjct: 145 G----NIGRALSEAALDANETDRLVVELSSFQLKGTTDF-----RPHIACLLNVYETHLD 195 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +E+ ++KA++F + T +N+DD Sbjct: 196 YHGSMEDYVASKAKLFANQTQEDTAVINWDD 226 >gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens NRL30031/H210] gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens NRL30031/H210] Length = 469 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + L+E Sbjct: 448 LNMGAGSIN--RVPSALVE 464 >gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha153] Length = 445 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-63q42] gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile ATCC 43255] Length = 484 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 101/269 (37%), Gaps = 45/269 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + DSR + F IKG DGH +I A++KGA +V D V G I Sbjct: 23 INNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D + K+A K +I +TG+ GKT+ +L L+ K IG+ Sbjct: 80 -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138 Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 +NN + M V L ++ + E F Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + T + P HL +E+ AK ++F + T +N DD + + Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268 + + Y++G ADF R K S+ Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273 >gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter sp. K31] gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31] Length = 485 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 148/372 (39%), Gaps = 35/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+ G DG FI A+ GA ++ D + LS+PV Sbjct: 19 ITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIASGAAAILAPDD----VEGLSVPVV 74 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 D+ A A AT IA+TG+ GKT+ + + A +G+ Sbjct: 75 HAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAASMGTLGVV 134 Query: 145 -NHIGVP---LTLARM--PVDVDFG-----IFELGMSHLG--------EIRFLTHLVRPH 185 + G+P LT + P D + +G++HL + R L VR Sbjct: 135 VSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRLDG-VRLA 193 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALGI 244 A T HL + +AK +FE L G T LN D F + + G Sbjct: 194 AAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASAAVTSG- 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +TI S G +L + +++ Q + +V+ G A N+L+ G+V Sbjct: 253 QTILSVGHEGQG-LKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAAGLVL 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D+D I AL GR +R +G +D Y P ++ +VL+ + Sbjct: 312 ATGEDLDATIAALEHLEGAAGRLQRVGTGA-RGGEAYVD--YAHTPDGLE---TVLAALR 365 Query: 365 PHGEGRRIAVLG 376 PH G+ I V G Sbjct: 366 PHTRGKLIVVFG 377 >gi|167825933|ref|ZP_02457404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 9] gi|167847419|ref|ZP_02472927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei B7210] Length = 165 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 8/84 (9%) Query: 312 TAIK-ALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGE 368 AIK L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P Sbjct: 3 AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP--- 59 Query: 369 GRRIAVLGDMCEMGELSQSFHIDL 392 R+ V+G+M E+G+ +FH ++ Sbjct: 60 --RVLVIGEMGEVGDEGPAFHREI 81 >gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3] gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3] Length = 488 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 49/369 (13%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D+ + + +G + + ++G S +AD Q + Q Q V+ +GK ++++ + Sbjct: 234 DAVVREIMPR---IG-RHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L +Y+ + G A AL RSI + + + D L + L +GD++ Sbjct: 401 LLLEVYSAGEAPIPG----ADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLL 456 Query: 448 VVKSSNSCG 456 + + + + G Sbjct: 457 LTQGAGNIG 465 >gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M0579] gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240149] gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis NZ-05/33] Length = 445 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae SK-93-1035] gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae SK-93-1035] gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae SK-93-1035] Length = 506 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + LLE Sbjct: 485 LNMGAGSIN--RVPSALLE 501 >gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] Length = 488 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 155/377 (41%), Gaps = 46/377 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 V G++ DSR + P F A+ G DG F A GA +V + A + L+ Sbjct: 23 VTGLTADSRRVRPGFVFVAVPGTTMDGRSFATAAAAAGAVAMVTEGPRPEALPAEVAYLA 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P D AL A R TI+A+TG+ GK++ + + L+ + + A +G+ Sbjct: 83 VP-----DARRALALAAARLFARQPETIVAVTGTSGKSSVADFVRQVLARLGRRSASLGT 137 Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184 + + + TL R+ D GI +L M SH E R L VR Sbjct: 138 LGVVTGEGAAYGSLTTPDPVTLHETLDRLAGD---GITDLAMEASSHGIEQRRLDG-VRL 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243 A T + HL E +AK +FE L T +N D + + A A G Sbjct: 194 TAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLPDAATAIVNADGPMADRVAASVRARG 253 Query: 244 IKTIYS--FGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + G++ + + + R + Q + ++ +G++ +V +G +N L+ Sbjct: 254 LPLVTTGLSGETLRLSAVETRGFAQA-----LTIKAEGRAYQVDLPLVGGFQVENALVAA 308 Query: 301 GIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+V A + ++ H G+ R A + G ++D Y P ++ V Sbjct: 309 GLVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHNGALCVVD--YAHKPEALA---GV 363 Query: 360 LSQISPHGEGRRIAVLG 376 L + P GR + V+G Sbjct: 364 LQALRPFTTGRLVCVMG 380 >gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] Length = 514 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 85/386 (22%), Positives = 159/386 (41%), Gaps = 55/386 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV-----VVNTDMVASIGSL 81 + + DSR ++ + F A+ G +G DF A+++GA V + ++ S + Sbjct: 30 IRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGAVAVLSEQSIEEPSLLESASAH 89 Query: 82 SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + + + + +++L+ A TI +TG+ GKT+ L AL+++ A Sbjct: 90 QVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDGKTSVAHFLAQALTALNPPVAL 149 Query: 140 IGSYNN------HIGVPLTLARMPVDVDFGIF-ELGMSHL-------GEIRFLTHLVRPH 185 +G+ + H T + + F F E G+ H+ G + + V Sbjct: 150 VGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRHVAMEVSSHGLDQGRVNGVAFD 209 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T + HL + + A AK ++F GL+ + LN DD F +L AL Sbjct: 210 LAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKAS---VLNCDDDFGCML-----ALE 261 Query: 244 IK---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IGYH 291 ++ +Y +G + Q+ + +++ + G +V G +G Sbjct: 262 LEERLPVYGYGFDGDMSPQMTARVRGHN---LQLTVDGLRFDVSSGGQRYTVDVALMGRF 318 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANP 350 A N+L + + L + A++ +S P G R C L G ++D Y P Sbjct: 319 NASNVLAVITSLLALGVPLPEAVEVVSRLQPVPG---RMECLKLPNGAVAVVD--YAHTP 373 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ +S L + H GR V G Sbjct: 374 QALEQTLSSLRE---HSGGRLFTVFG 396 >gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2846] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 36/263 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPVFG 87 +DSR + + F AIKG DG+ FI A+ GA VV T++ + +++ +PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIRNVPVVK 83 Query: 88 VDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + L+ LA V SK T++ +TG+ GKTT ++L + A +G+ N Sbjct: 84 YYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN 143 Query: 146 HIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVITT 191 + + A+ + + F+ + I +H + H A+ T Sbjct: 144 GLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTN 203 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSF 250 + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV------ 256 Query: 251 GKSKNADFQLRKWKQCSEQSWME 273 S NADF++ WM+ Sbjct: 257 --SMNADFKV------GSHQWMK 271 >gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 451 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ K+ G + +IG P + +A+ D Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PH+AVIT + P H+ G EE +AK I + + Sbjct: 162 DTLVMELSSFQL----MGTDTFHPHMAVITNLMPTHIDYHGGFEEYVAAKWNIQKNMTAE 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L K+ A Sbjct: 218 DYLVLNFNQDLAKELAQKTAA 238 >gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] Length = 492 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 41/359 (11%) Query: 27 VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSI 83 +NG +++DSR + + F A+ G DG D+I A+ +GA LV+ + +++ S Sbjct: 26 MNGHMTLDSRKVGEGDIFVALPGVQRDGRDYIKQALAQGAALVLAEANDFNISTDADSSS 85 Query: 84 PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V D+ L LA + ++A+TG+ GKT+ E + L ++ C+G Sbjct: 86 RIMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVG 145 Query: 142 SYNNHI-GVPLTLARMPVDV--------DF---GIFELGMS------HLGEIRFLTHLVR 183 + + + P DV D+ GI + + H G + L+ Sbjct: 146 TLGSRLEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSL--- 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE--LLKAKSHA 241 H V T + HL + A+AK +F IF N DD L A + A Sbjct: 203 -HTGVFTNLTRDHLDYHGNAADYAAAKLSLFNTFNLKRAIF-NADDPVASQVLAVAGASA 260 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +GI G + +R + +E+Q + E+ G A N++ + Sbjct: 261 IGITL---EGAEAHVQVAIRSMRPM----LLEIQSPWGAAEINLALSGRFNAFNVVAAIV 313 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L D A P GR +R + N+ ++D Y P ++++A+ L Sbjct: 314 AVTGLGHDFHRVCAAAESLKPVPGRMERILMSGNR--LAVVD--YAHTPDALESALQTL 368 >gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus MO6-24/O] gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus MO6-24/O] Length = 442 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 31/300 (10%) Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LVV N + + + + V+G + A AA +IAITGS GK+T + Sbjct: 69 ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 LT +++ IG +IGVP L + +V+ + EL L E HLV Sbjct: 125 -LTGVMANACGVKCAIGG---NIGVP-ALDLLEQEVELYVLELSSFQL-ETTSSLHLV-- 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A ++ H+ + G+++ AK IF+ K G + N DD + SH + Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQL 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG S + +F + + +SW+ Q +G H N+L+ L +++ Sbjct: 231 LALVTFG-SDDKEFGVMSHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361 D + AL + G +RC A N+G +++S N AS +AA+S L+ Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340 >gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] Length = 526 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 29/257 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + GI++ S F AI G G F A++ GA +V+ + D A L +P Sbjct: 45 LRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVP 104 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D + +L + A ++ T +A+TG+ GKTTT ++ A++S + G+ Sbjct: 105 VIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGT 164 Query: 143 YNNHIGVPL------TLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPH------- 185 H+G P+ T A PV F +E G G I H + H Sbjct: 165 VETHVG-PISFEAVRTTAEAPVVARFLAATEQYECGA---GVIELSAHALSLHRVDGIVF 220 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A T + HL + +E AKA +F E + + DD + L A+ + + Sbjct: 221 DVAAFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRL-AQQATVPV 278 Query: 245 KTIYSFGKSKNADFQLR 261 T+ + + + AD+Q+R Sbjct: 279 TTVSALTE-EAADWQVR 294 >gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] Length = 493 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q F++ +++DSR+I + F A+ G DG FI A+ +GA V+V+TD + G + Sbjct: 18 QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGAIAVLVHTDSIEEQGKVIA 76 Query: 84 PVFGVDDVLGALNK-LAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 GV L K ++ A +R I+ ITG+ GKT+T ++ ++ ++ Sbjct: 77 TEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGK 136 Query: 137 YACIGSYNNHI-----------GVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182 A +G+ N + +TL R + D G+ M S G ++ V Sbjct: 137 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLYEFADKGVNTCAMEVSSHGLVQGRVDAV 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 +AV T + HL +E A+AK +F Sbjct: 197 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR 229 >gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC 39073] gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 468 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 158/393 (40%), Gaps = 49/393 (12%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ S+PV ++L ARL + IA+ G+ GKTTT ++ + + Sbjct: 81 NPEVVAAR-QRSLPVVKRGELL---------ARLFNARRGIAVAGAHGKTTTSALVALVM 130 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + A IG Y P DF + E S + FL ++P IA+I Sbjct: 131 KEGGLEPAAVIGGYVRE----FASNAYPGRGDFLVAEADES---DGSFL--WLKPEIALI 181 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I HL ++ ++ I +A + + + G L +D L A S + + + Sbjct: 182 TNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAEDPRVAGLVACSP----RQVIT 237 Query: 250 FGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +G + D+ Q+ + + E L +M V G H N L + Sbjct: 238 YGLNGRPDYRATGVQMAGMGGRAAIYYREQYLGQLTMAVP----GRHNILNALGAIAAGH 293 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +AL F G G+R+ + G ++D+ Y +P ++A ++ SQ+ Sbjct: 294 QLGIPFAVMARALGQF---RGVGRRFEILWDDGTTRVVDD-YAHHPTEIRATLAAASQV- 348 Query: 365 PHGEGRRIAVLGDMCEM------GELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDA 417 G R +AV E Q+F D+ V +Y L G + + Sbjct: 349 --GAKRVVAVFQPHRYTRTHHLYREFGQAFRQADVVIVNDIYPAGEAPLPGVNSQLITGE 406 Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448 + S H V+Y T++ F++ S GD+V+ Sbjct: 407 IKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVL 439 >gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio cellulolyticus CD2] gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio cellulolyticus CD2] Length = 464 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 33/263 (12%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164 A I A+TGS GKTTT ++ L++ + Y C +G +IG PL L+++ + D + Sbjct: 117 AQIFAVTGSDGKTTTTTLIYNMLTA--QGYNCWLGG---NIGTPL-LSKIDEIKETDKVV 170 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T + P++AV+T +AP HL ++E AK IF K+ + Sbjct: 171 LELSSFQLH-----TMTLSPNVAVVTNLAPNHLDMHKSMDEYIEAKKNIFLHQSKSDKVI 225 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 LN+D+ ++ + S + +Y F + D M V GK + E+ Sbjct: 226 LNFDN---DITREFSKDVKGNVVY-FSRVNKID------SGAKMDGEMLVYSDGKDIREI 275 Query: 284 VHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V+ G G H +N L + V I ++DT + + F E R + R F+ Sbjct: 276 VNSGDIVIPGVHNIENYLAAIAAV-IDYVEIDTIKRVATTFKGVEHRIELVRELDGIKFY 334 Query: 340 TLIDESYNANPASMKAAISVLSQ 362 ++S ++P+ A ++ Q Sbjct: 335 ---NDSIASSPSRTIAGLNSFKQ 354 >gi|237743960|ref|ZP_04574441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 7_1] gi|229432991|gb|EEO43203.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 7_1] Length = 454 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 23/253 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIF 165 K IIAITG+ GK+TT T +S + +Y +IG L+ + D+DF Sbjct: 112 KTKIIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFISL 167 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L I +P+I++I + P H+ + +E K I + + Sbjct: 168 ELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 223 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD E ++ + K I S K K AD + K C + + + + S++ Sbjct: 224 NIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKICHGKDSI-IDVDKLSLK--- 275 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H +N L + IL D + + L + P E R + + N G I++S Sbjct: 276 ---GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FNYGKLKFINDS 329 Query: 346 YNANPASMKAAIS 358 N S K AI Sbjct: 330 KATNVDSTKFAIE 342 >gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae bacterium Broad-1] gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae bacterium Broad-1] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 40/303 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIAL 130 ++A IP++G ++ +A RLR + A +A+TG+ GKTTT +ML L Sbjct: 104 LLAQARERGIPIWG---------EVELAWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNIL 154 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + +G ++G+P+ A M + + +F + +S ++ + + + AV+ Sbjct: 155 RTAGLRSVAVG----NVGLPIVEAVMDPE-PYDVFAVELSSF-QLHYTSSMA-AEAAVVL 207 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKT--------GTIFLNYDDSFFELLKAKSHAL 242 IA HL + +EE A+ K ++EG+E+ T+ L + E +A L Sbjct: 208 NIAEDHLDWYPSMEEYAADKGRVYEGVERACVYNVADEATMHLVEEADVVEGARAIGFTL 267 Query: 243 GIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + G ++ D + +Q S ++ S H QN L Sbjct: 268 GTPAVGQVGVVEDILVDRAFIEERQTSAAELCQISDLASSAP--------HYVQNALAAA 319 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L F P G R G T +D+S NP + +A++ Sbjct: 320 ALARAHGVSQAAVRDGLKSFRPD---GHRIEVVAEVGGVTWVDDSKATNPHAAQASLQAY 376 Query: 361 SQI 363 + Sbjct: 377 DPV 379 >gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 496 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 152/390 (38%), Gaps = 65/390 (16%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q + I DSR F I G H D H FI + GA V+ S+ + Sbjct: 22 QTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGARAVLTER------ASVDV 75 Query: 84 P----VFGVDDVLGALNKLA-----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 P V V ++ AL+ + AR+ ++ ITG+ GKTTT ++ L Sbjct: 76 PAGVAVLYVLNLEKALDTIVPFFYDYPARVMR---VVGITGTNGKTTTSYLVRAILRHAG 132 Query: 135 KTYACIGSYNNHIG---VPLT------------LARMPVD-VDFGIFE-----LGMSHLG 173 IG+ I +P + LA M +D + E L + + Sbjct: 133 HRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVSSHALALGRVA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKTGTIFLNYD 228 I F T AV T + HL +E A AKA +FE G ++ T LN D Sbjct: 193 GIEFDT-------AVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTAVLNAD 245 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D+ E ++A + I ++G AD + + + + + GK + +H GI Sbjct: 246 DAASETMRAYTRC----PIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTGI 301 Query: 289 -GYHMAQNMLMTLGI-VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N+L +G ++ A D A AL+ F GR + R Q F ++D Y Sbjct: 302 TGLFNVHNVLAAVGASLAEQVAATDIA-AALTAFTGVPGRFELVR--EGQDFAVIVD--Y 356 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLG 376 P M+ + ++ +G IAV G Sbjct: 357 AHTPDGMENVLRTARAVT---KGHIIAVFG 383 >gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 36/257 (14%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPV 85 +DSR + + F AIKG DG+ FI A+ GA VV T++ V IG ++PV Sbjct: 24 LDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVDFIG--NVPV 81 Query: 86 FGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L+ LA V SK T++ TG+ GKTT ++L + A +G+ Sbjct: 82 VKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKTTISQLLAQWAELLGHRAAVMGTI 141 Query: 144 NNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAVI 189 N + + A+ + + F+ + I +H + H A+ Sbjct: 142 GNGLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIY 248 T + HL +E A+AK +F L+ T +N DD ++ L A+ + Sbjct: 202 TNLTRDHLDYHQSMENYAAAKKRLFTELD-TQIKVINADDEIGYQWLTELPDAIAV---- 256 Query: 249 SFGKSKNADFQL--RKW 263 S NADF++ +W Sbjct: 257 ----SMNADFKVGSHQW 269 >gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] Length = 499 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/354 (22%), Positives = 149/354 (42%), Gaps = 27/354 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR + F A++G H DG D+I A+ G ++V S+ S + Sbjct: 34 VTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESL-SDEVAWL 92 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIKKTYAC 139 V D A+ LA R + TI+ +TG+ GKTTT + + + + + C Sbjct: 93 TVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVC 152 Query: 140 IG----SYNNHIGVP--LTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAVIT 190 I Y P L L R+ D VD G L M S ++ + + +A+ T Sbjct: 153 IRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFT 212 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL ++ +AK +F+ L +N DD ++ A ++++ Sbjct: 213 NLTRDHLDYHGTMQAYIAAKKLLFDNLSPDAYALVNADDRNGSVMVQNCAA----HLHTY 268 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +AD+ + Q + S + L + +E+ +G + A N+ G+ +L D+ Sbjct: 269 AMRSHADYMSQLLGQYVDGSTL--LLDNEEVEI--KLVGSYNAYNVTAVYGVARLLLPDL 324 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D ++ + + G+ A +G+ ++D Y P +++ + +S+++ Sbjct: 325 DKSLILRGISSLEHVNGRFDLLASPRGYHVVVD--YAHTPDALENLLKTVSELN 376 >gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 89/393 (22%), Positives = 154/393 (39%), Gaps = 43/393 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMVASI 78 V G+++DSR + P F A+ G G +FI +A+++GAG ++ + ++V + Sbjct: 18 VTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELVGAD 77 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---- 134 +L + +D AL A T++A+TG+ GKT+ ++ Sbjct: 78 AALVV----AEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAI 133 Query: 135 --KTYACIGSYNNHIG----VPLTLARMPVDVDFGIFEL----GMSHLGEIRFLTHLVRP 184 T G Y + P+TL R+ + SH + R L VR Sbjct: 134 SLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDG-VRL 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243 T + HL +E +AKA +F+ LE+ +N DD + + G Sbjct: 193 KAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERG 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +K + + GK + AD ++ + + + G++ V IG A+N+L G+ Sbjct: 253 LK-LTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLA 311 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + I+ L GR G +D Y+ P ++ S L + Sbjct: 312 IAAGDEAPRVIETLPGLTTVRGR-MELAAVRENGAAVFVD--YSHKPGALA---SALQSL 365 Query: 364 SPHGEGRRIAVLGDMCE--------MGELSQSF 388 PH GR + V G + MGE ++ F Sbjct: 366 RPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQF 398 >gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] Length = 485 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 31/326 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 22 DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136 Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 IG P +L + + +++ + E+ SH EI + +V A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK ++F L+ +N DD + + L + I S Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRL-YDEFIVDNSEIIS 253 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G + D + + +++++ + + +V +G N L +GI + Sbjct: 254 YGID-SGDLE----GDYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIGIS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALN 335 ++ +K +S GR + C N Sbjct: 309 MEEILKRVSTIKAAPGRFEALDCGQN 334 >gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] Length = 485 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 137/363 (37%), Gaps = 53/363 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+R + F IKG DGH F + A ++GA ++ + + IPV V + Sbjct: 28 DNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPV-----DVDIPVIIVRNTK 82 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-- 148 A+ LA + K ++ ITG+ GKTTT ++ +T IG+ IG Sbjct: 83 RAMALLADRFYGQPSRKFRLVGITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDE 142 Query: 149 -------VP--LTL--------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 P LTL AR D + E+ L E R H IAV T Sbjct: 143 TLETKNTTPDSLTLQKTFHEMNARGVTDC---VMEVSSHSLVEGR--VHGCDYDIAVFTN 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSF---FELLKAKSHAL 242 + HL + E AK+ +F L +K LN DD+ FE + A Sbjct: 198 LTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAASKEFEQVTAVP--- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++G +ADF + + + + EV G NML + Sbjct: 255 ----VITYGIDHDADFMAENIDMHARGTTFTLVTPFEKREVRLKLAGKFSVYNMLAAIAA 310 Query: 303 VSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +D+ IK EG RG+ Q F ++D Y P S++ + + Sbjct: 311 GVVSGVPLDSVIKTAEAM---EGVRGRFELVNGGQDFSVIVD--YAHTPDSLENVLKTIR 365 Query: 362 QIS 364 Q + Sbjct: 366 QFA 368 >gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 90/386 (23%), Positives = 148/386 (38%), Gaps = 35/386 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q + ++ G V+G+ DSR + P FFA++G DGH FI A+ +GA VV Sbjct: 6 LCQILDPSAVSGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVV 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTI 128 + + G I V D A SK ++ ITG+ GKTT ++ Sbjct: 66 MESPHTLPTGVTGILV--KDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVES 123 Query: 129 ALSSIKKTYACIGSYNNHI---------GVPLTLARMPVDVDFG-------IFELGMSHL 172 L + A +G+ + P ++ M DF + E+ SH Sbjct: 124 ILLAAGYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVS-SHS 182 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDS 230 E R + V + V T + P HL +E AK +F GL + N DDS Sbjct: 183 LEQRRVDG-VWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDS 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + L A + + G + D ++ + + +G Sbjct: 242 WGARLGAM-----LPAVIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSPLVGD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + QN+L G+ + L T KAL+ + G+ A +G L+D ++ + Sbjct: 297 YNLQNLLCAAGVGAALDMVPATIAKALA--QAPQVPGRLESIANERGALVLVDYAHTGD- 353 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ + L Q+ P R + V G Sbjct: 354 -ALENVLVTLRQLQPR---RLLCVFG 375 >gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum DSM 273] gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium luteolum DSM 273] Length = 460 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 44/241 (18%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLT--LARMPVDV 160 +A I ITG+ GKTTT ++ ++ + +G Y +IGVP + + M + Sbjct: 107 RARIAGITGTDGKTTTATLVQRMAEAVGR----LGGYRAYGVGNIGVPFSSKVEEME-ER 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 D + EL L RP A+IT I P HL + G I A AK I L Sbjct: 162 DIAVVELSSYQLERCSSF----RPEAALITNITPDHLDRYGGDIMRYADAKYRIAMNLGS 217 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQCSEQSWM 272 +GT+ N DD +L+A+ G++ T G ++ L E W+ Sbjct: 218 SGTLVYNADDP---ILRARFSVGGLQFSTVPFSTAGPVGGDPSSGIYL-------EDGWV 267 Query: 273 EVQLQGKSMEVVHHG-------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 L+ ++H G H N+L +G+ L D ++AL F E Sbjct: 268 HAGLR----RLIHTSEFQKGSFRGNHNNSNVLGAIGLARALRLDEKAVLQALREFPGVEH 323 Query: 326 R 326 R Sbjct: 324 R 324 >gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM 43043] gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM 43043] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 18/256 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT +LT+AL + ++A G H T A D D + E Sbjct: 131 VAVAGANGKTTTTSLLTVALQGCGLDPSFAVGGELARH----GTNAHRGAD-DIFVVEAD 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + F+ + RP +A++T + P HL + + +A + ++ G + D Sbjct: 186 ES---DGSFIVY--RPEVAIVTNVQPDHLDFYGSFAVVQAAYEALVATIQPGGLLVTCAD 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D+ L ++ A G + + ++G +AD L ++Q S V +G + Sbjct: 241 DAGSRALAERATARGTR-VLTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTLGIP 299 Query: 289 GYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H A N + V L D + L+ F G +R+ ++D+ Y Sbjct: 300 GRHNALNAVAAYTAAVHGLGQQPDRVLAGLASF---TGTRRRFEPKGEAAGVVVVDD-YA 355 Query: 348 ANPASMKAAISVLSQI 363 N + A + SQ+ Sbjct: 356 HNAGKVAAVVETASQL 371 >gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 149/374 (39%), Gaps = 43/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ S ++ F A+ G DG ++ A+Q+GA +V+ ++ + + Sbjct: 22 VTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRGASAIVIGKGKGVTV-PAGVALI 80 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 VD+ AL K+A R +A+TG+ GKT+ + +S+ + A +G+ Sbjct: 81 EVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVADFTRQIFTSLGRKAASVGTIGIV 140 Query: 145 -------------NHIGVPLTLARMPVDVDFGI----FELGMSHLGEIRFLTHLVRPHIA 187 + + + TLA + D G+ FE L + R V A Sbjct: 141 KPDGAVYGSLTTPDPVTLHTTLASL---ADEGVTHLAFEASSHGLDQNRL--DGVELSAA 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ E +AK +F E L+ +N D + + A + A G++ Sbjct: 196 AFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDGARSADVAAAAKARGLR- 254 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+S + + + Q + + G+S +V +G + +N L+ G+ Sbjct: 255 VMTVGQSGDT-LKRTSLTRDGFQQRIGILFDGRSFDVRLPLVGAYQVENALVAAGLAIAT 313 Query: 307 TADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D + AL GR G+R G ++D Y P ++ AA L Sbjct: 314 GEKADAVLAALESLKGVPGRLEIIGER------NGGLAVVD--YAHKPEALAAA---LDA 362 Query: 363 ISPHGEGRRIAVLG 376 P GR I+V G Sbjct: 363 CRPFVTGRLISVFG 376 >gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] Length = 497 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 20/313 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+AITG+ GKTTTKEM+ LS+ ++ A S N+ L + D + +FE + Sbjct: 138 IVAITGTSGKTTTKEMIKHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAV 197 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G++ +P I +IT I HL+ +E AK E+ + ++ GT+ +N +D Sbjct: 198 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAED 257 Query: 230 ---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 ++ K L + G + F+ + + ++ K ++ Sbjct: 258 MNTKKLDISKFNGRVLKV------GIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVP 311 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDE 344 G G H N L + + + A L F R + + L +G L+D+ Sbjct: 312 GFGQHQVYNALAAIAAAYEIGVPIPVAANQLQSF-----RQLKKQLQLFEGINHSMLLDD 366 Query: 345 SYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +++ S++A + VL+ + GEG ++IAV+G + ++G H E++ + Sbjct: 367 TWSITTTSLEAGLKVLNDL---GEGKKKIAVIGTITDLGSWGYIIHEQAGELIHRIGVDV 423 Query: 404 VWLSGFHVLALKD 416 + G H + D Sbjct: 424 LITIGEHARIMAD 436 >gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parasanguinis ATCC 15912] gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus parasanguinis ATCC 15912] Length = 449 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 23/222 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + EL L I P IAVIT + P H+ E +AK + + + + Sbjct: 162 EVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217 Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 I LN++ + L K K+ L TI + D L K+K EV ++ Sbjct: 218 DVIVLNFNQDLAKELATKTKARVLPFSTIEKVDGAYLED-GLLKFKG-------EVVMRA 269 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + + + + + LS F Sbjct: 270 DELGVP----GSHNVENALATIAVAKVRSVENEVIKETLSAF 307 >gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. TJI49] Length = 131 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR++ P + F A+KG +D HDF+ +GA + + + L++P+ Sbjct: 29 VSTDSRTVGPGDLFVALKGERFDAHDFLGDVAARGAAAAL----VAHAPAGLAMPLIVGG 84 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + AL LA R R ++A+TGS GKTT KEM+ Sbjct: 85 ETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMI 121 >gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] Length = 477 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 57/377 (15%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73 H +GI P + DSR + F A G DG +I A+ GAG V+ + Sbjct: 8 HDLGIRPSSLTS----DSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEGFS 63 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 A + ++++PV + G + S ++ +TG+ GKT+ + LT L+S+ Sbjct: 64 WPADLQAVNLPVKDLRKQAGEIAD-EFYGHPSSALWMVGVTGTNGKTSCTQWLTHCLNSL 122 Query: 134 KKTYACIGSYNNHIGVPLTLARM------PVDVDFGIFE----------LGMSHLGEIRF 177 ++ A IG+ N G P LA P+ + + E + +S G + Sbjct: 123 QRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQG 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD----SF 231 + V IAV T + HL ++ A+AK + E GL+ LN +D +F Sbjct: 181 RVNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLK---LAVLNAEDAYGLTF 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHG 287 + L+++ + + S+G ++ D C+ ++ M++ + +V H Sbjct: 238 LQALRSEG-----RPVLSYGM-QSGDV------HCTSLHLHETGMQLSVTTPWGDVTLHA 285 Query: 288 --IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G A N+L L + + ++ A +A++ P GR ++Y N +ID Sbjct: 286 AVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY--GGNAMPVVVID-- 341 Query: 346 YNANPASMKAAISVLSQ 362 Y P +++ A+ L + Sbjct: 342 YAHTPDALENALQALRE 358 >gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella woodyi ATCC 51908] gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC 51908] Length = 502 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 22/223 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGS 80 VN +S+DSR + + F A+ G DG D+I A + GA + +V+TD V + S Sbjct: 19 VNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSLVHTDNPEMHGKVLTSNS 78 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I F + L AL A + + ++ +TG+ GKT+ +++ L + K A + Sbjct: 79 TQIFFFQLSRQLSALAAQAYPLPVE-RLKLVGVTGTNGKTSITQLMAQLLVCLGKQPAVM 137 Query: 141 GSYNNHI-----------GVPLT-LARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHI 186 G+ N + P+T +A++ + G + + +S G I+ V + Sbjct: 138 GTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVSSHGLIQARVDAVPFDL 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYD 228 A+ T ++ HL ++ AK +F+ K+G I L+ D Sbjct: 198 AIFTNLSRDHLDYHGTMQAYGEAKFRLFKFPSLKSGVINLDDD 240 >gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] Length = 477 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 156/377 (41%), Gaps = 57/377 (15%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--- 73 H +GI P + ++ DSR + F A G DG +I A+ GAG V+ + Sbjct: 8 HDLGIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEGFS 63 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + ++++PV + G + R+ ++ +TG+ GKT+ + LT L+S+ Sbjct: 64 WPTDLQAVNLPVKDLRKQAGEIADEFYGHPSRA-LWMVGVTGTNGKTSCTQWLTHCLNSL 122 Query: 134 KKTYACIGSYNNHIGVPLTLARM------PVDVDFGIFE----------LGMSHLGEIRF 177 ++ A IG+ N G P LA P+ + + E + +S G + Sbjct: 123 QRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQG 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDD----SF 231 + V +AV T + HL ++ A+AK + E GL+ LN +D +F Sbjct: 181 RVNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLK---LAVLNAEDAYGLTF 237 Query: 232 FELLKAKSHALGIKTIYSFG------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + L+++ + + S+G S + + W +V LQ M Sbjct: 238 LQALRSEG-----RPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVM---- 288 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G A N+L L + + ++ A +A++ P GR ++Y N +ID Sbjct: 289 ---GRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGRMEQY--GGNAMPVVVID-- 341 Query: 346 YNANPASMKAAISVLSQ 362 Y P +++ A+ L + Sbjct: 342 YAHTPDALENALQALRE 358 >gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1] gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1] Length = 480 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 102/428 (23%), Positives = 178/428 (41%), Gaps = 60/428 (14%) Query: 57 ILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108 I HA + G ++VV+T + ++ L IPV ++LG L + Sbjct: 69 IGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRAEMLGELMRYRYG------- 121 Query: 109 TIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 IA+ G+ GKTTT ++ +A T+ IG N G L G F Sbjct: 122 --IAVAGTHGKTTTTSLIASILAEGGSDPTF-VIGGRLNSAGTNAKLG-------TGRFL 171 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225 + + + FL HL +P ++V+T I H+S ++G + L G L Sbjct: 172 VAEADESDASFL-HL-QPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLHNLPFYGLAVL 229 Query: 226 NYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV 283 DD + E+L S + + ++G AD Q + QS V + +S+ + Sbjct: 230 CVDDPTIREILPQIS-----RPVVTYGIDHEADIQAVDIQNVGLQSTYRVLRRDAESLSI 284 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFF 339 + G H N L + + S D +AL F +G G+R++ + G Sbjct: 285 TLNIPGRHNVLNSLAAIAVASDENIAGDAIARALEKF---QGVGRRFQIQGEIPIMGGTV 341 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 TL+D+ Y +P + A I+ + Q P RR+ ++ ++ + D +VLS Sbjct: 342 TLVDD-YGHHPREVAATIAAVRQSWP---SRRLVMIYQPHRYSR-TRDLYEDFVQVLSDV 396 Query: 400 NI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 ++ V+ +G +A D +L RSI + + E L ++ L++GDVV+ Sbjct: 397 DVLLLMEVYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLEKHLLNGDVVL 456 Query: 449 VKSSNSCG 456 + + + G Sbjct: 457 TQGAGNVG 464 >gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] Length = 492 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 27/228 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V+ + +DSR + P + F AIKG DG FI A++KGA V V D + Sbjct: 16 PSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGA--VAVIADRLCEFDVAF 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++ V ++ L +L A+R K + +I +TG+ GK+TT M+ A Sbjct: 74 ESLYLVSELDKKLAEL--ASRFYDKPSHNLDLIGVTGTNGKSTTTAMIAHLAQYCNTQSA 131 Query: 139 CIGSYNNHIGVPLTLARM----PVDVDF------------GIFELGMSHLGEIRFLTHLV 182 IG+ G P L + P VD + + +S G ++ Sbjct: 132 IIGTLG--FGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAMEVSSHGLVQHRVAQC 189 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + AV T ++ HL + AK +F + + LN DD+ Sbjct: 190 QFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ-LVVLNQDDN 236 >gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] Length = 501 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 143/376 (38%), Gaps = 41/376 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR +AP +AF A G DG + A+ +GA +V + V G + + Sbjct: 25 LQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQEDVEPFGLAGEHIAALP 84 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------YACI 140 + A +A R + ++A+TG+ GKT+T L AL+ + K A + Sbjct: 85 GLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALNGLSKKELPALAGCALV 144 Query: 141 GSYNNHIGVPLTLARM------PVDVDFGIFELGMSHLG------------EIRFLTHLV 182 G+ IGVP L+ PV + + LG E R + Sbjct: 145 GTLG--IGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEASSIGLAEQRLAGTQI 202 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ T + HL S + AK +F+ GL +N DD+ L A+ Sbjct: 203 --SVALFTNLTQDHLDYHSDMAAYWQAKRVLFDWPGLRAA---VVNIDDAHGARLHAELQ 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ ++S A Q R V +++ + IG + N+L + Sbjct: 258 GGGLD-LWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGLYNVSNLLGVI 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L + A+ A + P GR ++ A L+ Y P ++ A++ L Sbjct: 317 AGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQ----PLVAVDYAHTPDALHQALAAL 372 Query: 361 SQISPHGEGRRIAVLG 376 ++ GR V G Sbjct: 373 RPMAAQRGGRLWCVFG 388 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 Query: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 Query: 361 SQISPHGEGRRIAVLG 376 I GR I V G Sbjct: 374 KNIRTITSGRIIVVFG 389 >gi|167896008|ref|ZP_02483410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 7894] Length = 160 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 7/78 (8%) Query: 317 LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAV 374 L F P +GR + R A T+ID++YNANP SM+AAI VL +Q +P R+ V Sbjct: 4 LEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLV 58 Query: 375 LGDMCEMGELSQSFHIDL 392 +G+M E+G+ +FH ++ Sbjct: 59 IGEMGEVGDEGPAFHREI 76 >gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] Length = 526 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 29/257 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 + GI++ S F AI G G F A++ GA +V+ + D A L +P Sbjct: 45 LRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVP 104 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D + +L + A ++ T +A+TG+ GKTTT ++ A++S + G+ Sbjct: 105 VIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGT 164 Query: 143 YNNHIGVPL------TLARMPVDVDF----GIFELGMSHLGEIRFLTHLVRPH------- 185 H+G P+ T A PV F +E G G I H + H Sbjct: 165 VETHVG-PISFEAVRTTAEAPVVARFLAATEQYECGA---GVIELSAHALSLHRVDGIVF 220 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A T + HL + +E AKA +F E + + DD + L A+ + + Sbjct: 221 DVAAFTNLQHDHLDYYGDMENYFQAKALLFTP-EHSRHGVVCVDDEWGRRL-AQQATVPV 278 Query: 245 KTIYSFGKSKNADFQLR 261 T+ + + + AD+Q+R Sbjct: 279 TTVSALTE-ETADWQVR 294 >gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gloeobacter violaceus PCC 7421] gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gloeobacter violaceus PCC 7421] Length = 489 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 90/397 (22%), Positives = 149/397 (37%), Gaps = 45/397 (11%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P H+LL A G +P + G+S DSR + P + F + G DG +F A+ Sbjct: 2 PAMRLHELL-ARTGLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTT 121 GA +V++ + A ++PV V DV+G +LA A ++ +A T Sbjct: 61 GGAAGLVISEN--ARGVEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLAGVTGTNGKT 118 Query: 122 TKEMLTIALSSIKKTYACIGS-YNNHIG--------VPLT------LARM-PVDVDFGIF 165 T L L + +G+ Y+ G P LA+M +G+ Sbjct: 119 TTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ L + R R AV T + HL +E AKA +F ++G + Sbjct: 179 EVSSHALAQQRVAG--CRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPEYRSGRAVI 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + G++ ++ + FQ + + ++G + V Sbjct: 237 NADDPW-----------GVRLAAAYDQVWTYSFQPGADIYPEDAVFTPEGIRGTLVTPVG 285 Query: 286 HG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +G N+L +G L D++ LS F GR +R + + Sbjct: 286 RAAFTSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGS-DDDIA 344 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y P ++ +L P GR I V G Sbjct: 345 VIVD--YAHTPDGLR---KLLEATRPFVRGRLICVFG 376 >gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing bacterium SS3/4] Length = 460 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 91/390 (23%), Positives = 160/390 (41%), Gaps = 48/390 (12%) Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 A+ + ++P+ ++LG L +++ IA++G+ GKTTT MLT L KK Sbjct: 87 AAAAAKNLPILSRAELLGQL--------MKNYEKSIAVSGTHGKTTTTSMLTEILMDEKK 138 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIA 193 N I V L + ++ G EL ++ E FL+ P++ +I I Sbjct: 139 --------NPTISVGGMLDSIGGNIRVGGPELFVTEACEYTNSFLSFF--PNMEIILNIE 188 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYS 249 HL F IE+I + + E L G + +N D + L K +G S Sbjct: 189 ADHLDFFKDIEDIRHSFRKFAELLPANGVLIINSDIRDYKEICDGLPIKVITVGSDPAKS 248 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTA 308 + + F C+ + +E GK+++ + G+ G H N L ++ L Sbjct: 249 HYSAADVTFN---ENACATYTLLE---DGKAIDTITLGVPGIHNVYNSLASIAAAHELGI 302 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362 + L F G +R+ G T+ID+ Y +P + A ++ Sbjct: 303 RGEGIRNGLLRF---TGTHRRFEKKGMIGGVTVIDD-YAHHPQEIAATLAAAKNYPHREI 358 Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 PH R A++ D + LS + H+ LA++ + ++ +S LA K A Sbjct: 359 WCVFQPHTYTRTKALMEDFAKA--LSAADHVVLADIYAARETDNLGISS-GTLAEKIA-A 414 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 HY + D + F+ + V+GD+++ Sbjct: 415 LGTDTHYFPSFDAIETFLLENCVNGDLLIT 444 >gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium thermocellum DSM 2360] gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium thermocellum DSM 2360] Length = 434 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165 A I A+TGS GKTTT ++ L ++ Y C +IG+PL L+++ D D + Sbjct: 85 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 139 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T P++AV+T ++P HL +EE SAK IF + L Sbjct: 140 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 194 Query: 226 NYDDS 230 N+D+ Sbjct: 195 NFDND 199 >gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium vitis S4] gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase [Agrobacterium vitis S4] Length = 486 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 96/399 (24%), Positives = 160/399 (40%), Gaps = 60/399 (15%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F DL + G +G V + GI+ DSR + P F A++G DG F+ AV +GA Sbjct: 11 FGDLTGPLDG-PVGDVE---ITGITADSRKVEPGMLFVALQGVKADGAGFVADAVARGAA 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ + + +++P D AL LA T++A+TG+ GKT+ Sbjct: 67 AVLSGSHL-----DIAVPALVTDQPRHALALLAARVYSGQPETMVAVTGTAGKTSVA--- 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFELGMS 170 S ++ +A G + IG ++ P D+G + + G++ Sbjct: 119 ----SFTRQIWAYAGLASAQIGTTGVIS--PTRSDYGSLTTPDPVALHQLLADLAQEGVT 172 Query: 171 H---------LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 H L + R VR A T + H+ + + +AK +F+ L G Sbjct: 173 HAAMEASSHGLDQSRL--DGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLPKG 230 Query: 222 T---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQ 277 + IF + + S + A+ ++T+ G DF L++ + + E+ Q Sbjct: 231 SPAVIFADDEWSAEAIRVARQAGHDVRTVGRAG-----DFLSLKRVEHFRHKQIAEIHHQ 285 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G EV G N L++ G+ + A+KAL GR + A N G Sbjct: 286 GAIFEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQA-NSG 344 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y P +++ VL+ + P GR I V G Sbjct: 345 ALAYVD--YAHKPDALE---KVLTAVRPFTSGRIIVVFG 378 >gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] Length = 482 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 98/247 (39%), Gaps = 29/247 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F I+G DGH + A GA ++V D+ + Sbjct: 22 IEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLEDLSCYKDCTII 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +A II ITG+ GKTT+ M+ L +G+ Sbjct: 82 KVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKTTSTFMMKAILEKAGYKVGLLGTIA 141 Query: 145 NHIG---------VP--LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHI 186 N+IG P L L ++ D VD+ + E+ L +L + V Sbjct: 142 NYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSL----YLDRVYGVEFKE 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL E ++K +F+ + + +N DDS+ E K ALG K Sbjct: 198 AIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS---VINIDDSYGE--KVLKKALGNKV 252 Query: 247 IYSFGKS 253 Y KS Sbjct: 253 TYGVEKS 259 >gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris aestuarii DSM 271] gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris aestuarii DSM 271] Length = 469 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 109/269 (40%), Gaps = 28/269 (10%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLT-LARMPVDVDF 162 A IIA+TG+ GKTTT ++ ++I +A Y +IGVP + + D Sbjct: 110 ARIIAVTGTDGKTTTATLI----AAICADHALAAGYRVFSVGNIGVPFSSMVGSMASGDI 165 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTG 221 + E+ L + RP IA++T I P HL + G + A AK IF + Sbjct: 166 AVVEVSSYQLEGCTWF----RPDIALMTNITPDHLDRYDGSMRLYAEAKYRIFSRQRQDD 221 Query: 222 TIFLNYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 T+ +N DD L + LG + + +FG +E W+ + G Sbjct: 222 TLIVNADDPI--LRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVTEGGWITLFKSGSL 279 Query: 281 ME-VVHHG-------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E V+ H +G H N L + + +AL F E R + Y C Sbjct: 280 DERVIAHEDLLKRGFMGRHNLSNALAAALAADAAGVPLSSIKRALKAFGGVEHR-QEYVC 338 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ I++S N +M+ A+ +S Sbjct: 339 EIDG--VICINDSKATNLNAMRQALEAVS 365 >gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] Length = 485 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + + Sbjct: 22 DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D++ L LA + K II +TG+ GKT++ M+ + T IG+ Sbjct: 79 IDEIRHKLGYLASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136 Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG V + P +D IF+ + +I ++ V H A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ T N DD + Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVFNIDDKY 236 >gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 43/387 (11%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + + P + + +DSR++ F A++G DG +I A+ KGA V+ T+ Sbjct: 10 QVELAPNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQ 69 Query: 78 IGSLSI----PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 S I P+ + L+ LA K T++ +TG+ GKTT ++L + Sbjct: 70 HLSTKIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTT 129 Query: 132 SIKKTYACIGSYNNHI------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + A +G+ N + T + + V F + I +H + H Sbjct: 130 LLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQH 189 Query: 186 --------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-LK 236 +A+ T ++ HL +E A AK +F L I +N DDS + L+ Sbjct: 190 RVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQI-INADDSVGQTWLQ 248 Query: 237 AKSHALGIKTIYSFG-------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +A+ + F K+ F + + E SW + +L IG Sbjct: 249 EQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSAL-------IG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L+ + L D++ +K + GR +R A NQ ++D Y Sbjct: 302 QFNVSNLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMERL-SASNQP-TAIVD--YAHT 357 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A L H +G+ V G Sbjct: 358 PDALEKA---LQAARLHCQGKLWCVFG 381 >gi|262066316|ref|ZP_06025928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium periodonticum ATCC 33693] gi|291380011|gb|EFE87529.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium periodonticum ATCC 33693] Length = 432 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 39/326 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H D +F + K G+ N V + I + +D++ Sbjct: 32 DKKAMTSEEAM-----QHLDNIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + V L++K IIAITG+ GK+TT T +S + Y +IG L+ Sbjct: 79 VAYNYM-VEKNLKTK--IIAITGTNGKSTT----TAKISDLLNHAGYKACYAGNIGRSLS 131 Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L + +P+I++I + P H+ + +E K Sbjct: 132 EVLLHEKDLDFVSLELSSFQLENVENF----KPYISMIINMGPDHIERYKSFDEYYDTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + ++ N DD E ++ + K I S KSK A+ + K + Sbjct: 188 NISKNQDENQYFIENIDDVEIE---KRAKQIKAKRI-SVSKSKEANIYVANDKIYVGKDC 243 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + + S++ G H +N L + IL D + + L + P E R + + Sbjct: 244 I-IDVDKLSLK------GIHNVENTLFMVATSEILNIDREKLKEFLMIATPLEHRTELF- 295 Query: 332 CALNQGFFTLIDESYNANPASMKAAI 357 N G I++S N S K AI Sbjct: 296 --FNYGKVKFINDSKATNVDSTKFAI 319 >gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium thermocellum ATCC 27405] gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium thermocellum ATCC 27405] Length = 466 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165 A I A+TGS GKTTT ++ L ++ Y C +IG+PL L+++ D D + Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T P++AV+T ++P HL +EE SAK IF + L Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 226 Query: 226 NYDDS 230 N+D+ Sbjct: 227 NFDND 231 >gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] Length = 494 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 84/376 (22%), Positives = 149/376 (39%), Gaps = 43/376 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR+I + F AI G DG FI AV +GA V+ + G + + Sbjct: 27 VEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWLNA 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV V ++ L++LA +I +TG+ GKTT +++ L + + A +G+ Sbjct: 87 VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188 N ++ + +++ + EL +S G ++ + + V Sbjct: 147 TGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEVGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL +EE A AK +F K +N DD K+ + Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDDEV-----GKAWVSDLSNAI 260 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQL-------QGK-SMEVVHHGIGYHMAQNMLMTL 300 + S +Q W + +QL QGK S+ + IG A N+L+ Sbjct: 261 AVSLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPL----IGQFNASNVLVAF 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D + S P GR + ++ N+ + Y P +++ A++ L Sbjct: 317 STLLSLGIDKQILVDTASQLQPVIGRMELFQTP-NKAKVVV---DYAHTPDALEKALAAL 372 Query: 361 SQISPHGEGRRIAVLG 376 H G+ A+ G Sbjct: 373 ---RVHCSGQLWAIFG 385 >gi|148927746|ref|ZP_01811182.1| cytoplasmic peptidoglycan synthetases domain protein [candidate division TM7 genomosp. GTL1] gi|147886909|gb|EDK72443.1| cytoplasmic peptidoglycan synthetases domain protein [candidate division TM7 genomosp. GTL1] Length = 302 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 25/215 (11%) Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + IAV+T + H+ F ++ +A + + + + +N DD E +K Sbjct: 1 IHADIAVVTGVTNEHMEFFKTLDAVAQEELAVSQF---SSLTVVNRDDVLGEFVKY---- 53 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQ 294 + +I ++G S +A+++ E S +E +GK M V H +G H + Sbjct: 54 VNTSSIDTYGLSGSAEYRF-----VVEDSSLEEGFRGKFISLEFGEMPVTLHVVGEHNTK 108 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + + + + L P +GR + + L+D+SYN++ + Sbjct: 109 AAVAAGLVAAKMGLSAKEIAAGLEKIRPVKGRMNLLKGLEDS---ILLDDSYNSSAVTAV 165 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AA+ L +I +RIA+LG + EMGELSQS H Sbjct: 166 AALQTLYKIQAP---QRIAILGSINEMGELSQSEH 197 >gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium thermocellum DSM 1313] Length = 466 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165 A I A+TGS GKTTT ++ L ++ Y C +IG+PL L+++ D D + Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T P++AV+T ++P HL +EE SAK IF + L Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAEDRLVL 226 Query: 226 NYDDS 230 N+D+ Sbjct: 227 NFDND 231 >gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 508 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 38/377 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR IA + F A G DG +I +A+++GA V+ + +D Sbjct: 25 LASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEWDVAHLAID 84 Query: 90 DVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143 D+ ++A A ++ +AITG+ GKT+ + L ALS + + A IG+ Sbjct: 85 DLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIGTLGVGI 144 Query: 144 ---NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT-------HLVRP-----HIAV 188 H +T P V + +S+LG H R +A+ Sbjct: 145 FTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSGMHFDMAL 204 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFELLKAKSHAL 242 T HL + AKA +F+ GL+ +N DD+ + L+++ + Sbjct: 205 FTNFTRDHLDYHGDMAAYEEAKAMLFDWPGLQHA---VINLDDAMGVRLVQRLQSRQADV 261 Query: 243 GIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMT 299 GI T Y+ K + LR S QS QL+ + +V +G N+L Sbjct: 262 GI-TGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQFNVSNVLGI 320 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +GI+ + A+ A+ GR ++ L G L+ Y P +++ ++ Sbjct: 321 IGILLAKGIALQDAVNAVEALTAVPGRMQQ----LGGGEAPLVVIDYAHTPDALEKTLAT 376 Query: 360 LSQISPHGEGRRIAVLG 376 L ++ G V G Sbjct: 377 LRSVANDRGGELWCVFG 393 >gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 485 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 46/374 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G ++DSR +A F A G +G DFI A+ GA +V + + + Sbjct: 26 VLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPE---------VKIE 76 Query: 87 GVDDVLGALNKLA---VAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 G ++ +LA +AAR + + A+TG+ GKT+ E+ + A IG Sbjct: 77 GAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIG 136 Query: 142 ---------SYNNHIGVP---------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 SY+ + P LAR D+ IFE L + R + + Sbjct: 137 TLGVITAKNSYSLGMTTPDVVTFLSCCSDLAR--ADISHVIFEASSHGLDQYR--SDGAK 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 T+ + HL +E +AK +F E + GT + DD + A Sbjct: 193 VIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKR 252 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I + K +L + S+ + + ++G+S ++ IG + N L+ G+ Sbjct: 253 GLKLIDIW---KAEAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGLVRAGL 309 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V D+ + AL++ P GR +R + N G +D Y P ++AAI L Sbjct: 310 VLATGGDIKQTMAALTLLKPVRGRLERATQSQN-GAEVYVD--YAHTPDGLRAAIEAL-- 364 Query: 363 ISPHGEGRRIAVLG 376 PH EG V G Sbjct: 365 -RPHTEGLLWVVFG 377 >gi|315657994|ref|ZP_07910868.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis M23590] gi|315497030|gb|EFU85351.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus lugdunensis M23590] Length = 437 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 122/304 (40%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPQS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ RP A++T I H F +E++ A E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--RPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMANNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD L IY +G S D + + + +V + GK Sbjct: 201 IAWGDDEHLRKLNVDI------PIYYYGLSDKDDVYANDIQITDKGTEFDVYINGKYYNH 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H QN L + I + DV +AL F G KR L+ Sbjct: 255 FLTPQYGNHNIQNALAVITISYLEDMDVANIKEALETF----GGVKRRFNETKYDQQILV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + + LS++ H+ L Sbjct: 311 DD-YAHHPREISATIETARKKYPNKEVIAVFQPHTFSRTQAFLNEFAD--SLSKADHVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M12] gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Xylella fastidiosa M12] Length = 491 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 45/383 (11%) Query: 22 VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 +PQ ++G+ +DSR + P +AF A+ G G FI A +GA ++ Sbjct: 10 IPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGV 69 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132 S+ +I V G+ LGA+ A R S+A T++ +TG+ GKT+T ++L A Sbjct: 70 SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 124 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185 + A G+ +GV L +P + LG++R + V H Sbjct: 125 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180 Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +AV T + HL +E +AKA +F + + +N DD F L Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAV-INVDD-LFGL 238 Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A G++ + S +AD + + ++ + V +G Sbjct: 239 RLLHGLAKGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 298 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L G++ L + LS P GR R Q + Y P ++ Sbjct: 299 DNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 355 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 VLS +S H GR I V G Sbjct: 356 G---QVLSSLSSHVCGRLICVFG 375 >gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid adding enzyme) [Neisseria meningitidis WUE 2594] Length = 445 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32] gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32] Length = 458 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 113/271 (41%), Gaps = 31/271 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT M+ L++ I T IG N IG L + G F + Sbjct: 108 IAIAGTHGKTTTTSMVATILATGGIDPTI-VIGGRLNSIGTNARLGQ-------GKFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL + P IAV+T I HL +SGIEEI E + G L D Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 + A L K ++G + ADF+ + + + +G+ + E+ + Sbjct: 218 NGNV----ADIIPLVKKRFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFNM 273 Query: 288 IGYHMAQNMLMTLGIVSILT---ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G H N L T+ + + L D+ K+ G G+R++ ++D+ Sbjct: 274 PGAHNVLNALATIAVATELDMRFEDIQAGFKSFG------GVGRRFQVKGEVNGIMVVDD 327 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL 375 Y +P +KA ++ + G RR+ V+ Sbjct: 328 -YGHHPTEIKATLAA----AKGGWDRRLVVV 353 >gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus australis ATCC 700641] gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus australis ATCC 700641] Length = 450 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGFPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P HL E +AK I + + Sbjct: 162 DTLVMELSSFQLMGIEAF----HPEIAVITNLMPTHLDYHGSFEGYVAAKWAIQKNMTAK 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 + LN++ + L ++ A T+ F + D +++E + + Sbjct: 218 DFVVLNFNQDLAKDLSQQTQA----TVVPFSTQEKVD-----------GAYLEDGVLYFR 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M G+ G H +N L T+ + + D T + LS F Sbjct: 263 GEAVMRADQIGVPGSHNVENALATIAVAKLRGIDNQTIQETLSAF 307 >gi|315504606|ref|YP_004083493.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5] gi|315411225|gb|ADU09342.1| UDP-N-acetylmuramate/alanine ligase [Micromonospora sp. L5] Length = 493 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 43/291 (14%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH-IGV 149 A+AA + + T+ A+ G+ GKT+T M+T+ L I + +GS +H G Sbjct: 109 ALAAAMTGRRTV-AVAGTHGKTSTTSMVTMVLQQAGTDPSFVIGGEISEVGSGAHHGTGE 167 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + D F I+ RP +++IT I HL+ + + + +A Sbjct: 168 HFVVEADESDRSFLIY-----------------RPFVSIITNIEADHLNTYGDLATLEAA 210 Query: 210 KAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AE + G + DD+ E L+A+ + ++++G+S +AD ++ + Sbjct: 211 FAEFARLTDPAGFVITCADDAGGCRLAETLRAEG-----RRVWTYGESADADLRMSEVVS 265 Query: 266 CSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + +++G+ + + + G HMA N + +L V A AL F Sbjct: 266 SAHGVRYQAEVEGRPLGEIRLPVPGRHMALNSAAAVLAAYLLDLPVAAAEAALGAFPGVR 325 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 R +R A L+ + Y +P SM A+ L +++ G+GR I V Sbjct: 326 RRFERKGAADG----VLVYDEYAYHPTSMTLALQTLREVA--GDGRLIVVF 370 >gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 502 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 93/399 (23%), Positives = 156/399 (39%), Gaps = 44/399 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR+I P F + G + DGHD+I HA+Q GA ++ ++ G+++ Sbjct: 23 ITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNGAVAIMAEKELPELPGNIT--RI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L LA + + +I ITG+ GKTTT M+ L+ + IG+ Sbjct: 81 TVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTTTHMVDKVLNDSNRKTGIIGTLY 140 Query: 145 NHIG--VPLTLARMPVDVD--------------FGIFELGMSH---LGEIRFLTHLVRPH 185 IG V TL P + +G+ E+ SH +G +R Sbjct: 141 MKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLEVS-SHGLDMGRVRGCDF----Q 195 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKSH 240 V T ++ HL +E + K +F L + + LN DD+ ++ Sbjct: 196 TVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKVVLNADDAASSYYGKRTS 255 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I ++G AD + + + V+ S + G H N L + Sbjct: 256 A----QIVTYGIHNPADVRALHIQNTGDGCRFIVETPWGSSDFTMKVYGVHNVYNALAAI 311 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + +L F GR + + ++ F ++D Y NP +KA + Sbjct: 312 TTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKT--DRSFRVVVD--YAHNPDGLKATLLSA 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 +I+ G+ I V+G E L + D+A S Y Sbjct: 368 KEIT---SGKMICVMGCRGERDRLKRPIMADIAASYSDY 403 >gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 462 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 40/366 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAVAGTHGKTTTTSLVASILAAGGMDPTF-VIGGRLNAAGANACLGS-------GDFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I+V+T I H+ + + A E + L G L Sbjct: 160 EADESDASFL--FLSPVISVVTNIDADHMETYGHDFNRLKQAFVEFLQRLPFYGVAVLCA 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGK--SMEV 283 DD+ E++ S K I ++G A+F Q + V++ G + V Sbjct: 218 DDANVREIMPQVS-----KQIVTYGLDPAANFYAENVTAEGGQMRFDCVRVNGSVSRLPV 272 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCAL-NQGFFTL 341 + G H N L + + S + D +KAL+ F R +RY AL + G FTL Sbjct: 273 TLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIALADGGCFTL 332 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400 +D+ Y +P M A ++ P GRR+ + F D +VLS + Sbjct: 333 VDD-YGHHPVEMSATLTAARGAFP---GRRLLLAFQPHRYTRTRDRFE-DFVKVLSGVDA 387 Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 ++ V+ + + D AL R++ V + E++ + I + DGDVV+ Sbjct: 388 LVLTEVYAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAILDIVRDGDVVITM 447 Query: 451 SSNSCG 456 + S G Sbjct: 448 GAGSIG 453 >gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 447 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 89/333 (26%), Positives = 139/333 (41%), Gaps = 43/333 (12%) Query: 51 YDGHDFILHAVQKG-AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAAR 103 Y GH+ A Q G A +VV++T + + L SIPV + L AR Sbjct: 49 YIGHE----ARQVGDAEVVVISTAIPKTNPELLEARRRSIPVIPRAEAL---------AR 95 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDF 162 + ++ IA+ G+ GKTTT M+ +L ++ + A +G N IG +V F Sbjct: 96 ILAEGRGIAVAGTHGKTTTTSMIAHSLRALGENPTALVGGELNDIGS---------NVIF 146 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G +L ++ E + P AVIT I H ++ +EE+ A GL G Sbjct: 147 GREDLIVAEADESDRSILRLHPQAAVITNIEYDHPDFYASLEEVVETFARFVAGLPPEGH 206 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L DD L L + ++G S +LR + S S++ + K E Sbjct: 207 LVLCADDPRCRRLA----ELAPCPVTTYGLSGG---ELRA-RVLSPGSYLLFEGARKRGE 258 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G H N L GI L D A + L F G +R++ + ++ Sbjct: 259 VSLGVYGRHNVLNSLAAAGIARWLGHDPLEAARTLGSFG---GVRRRFQLKGERSGVRVV 315 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 D+ Y +P + A + V ++ + EGR IAV Sbjct: 316 DD-YAHHPTEIMAILDV-ARATAAPEGRIIAVF 346 >gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum WCFS1] gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum WCFS1] Length = 550 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 128/329 (38%), Gaps = 44/329 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A+ G H DGHD + A++KGA ++V + + +++PV Sbjct: 82 VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNVPVI 136 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V++ A+ LA K +I +TG+ GKTT ++ ++ IG+ Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196 Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + I TLA M D G+ + M S + + + IA Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237 V T + HL + + AKA +F L GT LN DD FE A Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H L +FG +A + + S + ++ + G V IG NML Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326 D IK+L +GR Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395 >gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 463 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 115/286 (40%), Gaps = 35/286 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ +S+ + FFAI+G DGHDFI A++KGA VV ++ + V+ Sbjct: 13 ITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPF-KDFKNIIV----VE 67 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSS------IKKTYACIG 141 D A + A +I +TG+ GKT+T ++ LS I Y +G Sbjct: 68 DSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTMYYKLG 127 Query: 142 SYNNHIGVPLTLARMPV-----------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 N I P T + +DF E+ L ++R + + V T Sbjct: 128 --NEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLR--VYPTKFFATVFT 183 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E +AK +F+ E + LN DD + +L + I ++ Sbjct: 184 NLTQDHLDYHKTMENYFNAKRRLFKDYEYEVCV-LNIDDDYGSMLYEEFKDKAI----TY 238 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 G S+NA ++ + Q E + K E+ + G A NM Sbjct: 239 GYSENAHLKIDYFDQ--ENKVFGFYYKNKHYEIKTNLKGDFQAYNM 282 >gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J] gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J] Length = 483 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 151/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A + Sbjct: 271 PLSITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGK 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P RR+ + F D +VL Sbjct: 331 GHFTLIDD-YGHHPVEMAATLAAARGAFPD---RRLVLSFQPHRFTRTRDCFE-DFVKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D AL R++ V + E ++ + I + DGD Sbjct: 386 GTVDALLLAEVYAAGEPPIIAADGRALTRALRVANKIEPVFVEQIEDMPQAILDAAQDGD 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Nigg] gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Weiss] gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 802 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 124/307 (40%), Gaps = 46/307 (14%) Query: 90 DVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141 + L ALNK + A L + I +TGS GKTT ++T+ L KT + IG Sbjct: 78 EFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 N G+ + ++ + E S G IR + P +VIT I HLSNF Sbjct: 138 GLNGE-GINGSSGS-----EYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFG 186 Query: 202 GIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E A + F KT I + N D S + +S +G ++FG + + D + Sbjct: 187 GDRERLLASLQDFS--TKTRQICWYNGDCS-----RLRSCLVG----HTFGFTSSCDLHI 235 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 ++Q +S+ V+ Q E V +G H N +G+ L D DT AL Sbjct: 236 LTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQR 295 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEG 369 F + R +R N L E Y +P+ + + VL+ PH Sbjct: 296 FPGVQRRLQRK----NSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFS 351 Query: 370 RRIAVLG 376 R +G Sbjct: 352 RLKECMG 358 >gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493] gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331] gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493] gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331] Length = 465 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152 L + + A L + IA+ G+ GKTTT ML+ A +++ T+ G NN Sbjct: 95 LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211 ++ P V G + + + + FL + P IAV+T I HLS + G + Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 + E + G + L DD + L + + ++G S +A +++ + Q QS Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260 Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328 ++ Q K+ V + G H A N I ++ + +K+L+ F + R Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTI 320 Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354 R L +G LI E Y +P +K Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345 >gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] Length = 489 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 49/367 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR ++ FF I+G DGHD+ A +GA VA + +PV Sbjct: 24 IKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADRGA---------VAFLTEEELPVD 74 Query: 87 G----VDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 G V D A+ +L AAR + T+I +TG+ GKT+ + L Sbjct: 75 GTQLIVRDSRRAMAQL--AARFYNYPSDRMTMIGVTGTNGKTSVTHFIQDLLKRAGTEAG 132 Query: 139 CIGS-YNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLT--------HLVRPH--- 185 IG+ Y G+ T+ P L +L +T HL R H Sbjct: 133 MIGTMYTELKGIQTETVNTTPESFTLQK-RLNEMYLAGAEAVTMEVSSHALHLGRVHGTA 191 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKA 237 +AV T ++ HL +++ A AK+ +F L G +N DDS+ +++ Sbjct: 192 FDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAYKRAVINVDDSYADIMLG 251 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S + ++G K D + + E ++L +S V G N L Sbjct: 252 ASAV----PVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQSYPVQLKLAGTFSVYNAL 307 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 V + + + A + LS + RG+ R + F ++D Y P ++ I Sbjct: 308 AAFAAVYAIGIEPEQAARFLSEL--PQVRGRFERVETDAPFHVIVD--YAHTPDGLENVI 363 Query: 358 SVLSQIS 364 + + Sbjct: 364 RTAKETT 370 >gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB] gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB] Length = 480 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 98/403 (24%), Positives = 168/403 (41%), Gaps = 57/403 (14%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYAC 139 S+PV ++L L K+ V+ IA++GS GKTTT M+ ++S + T Sbjct: 105 SVPVIPRAEMLAELLKMKVS---------IAVSGSHGKTTTTSMIATVMASGGLDPTM-V 154 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 IG IG + ARM G F + + + FL + P +AVIT I HL Sbjct: 155 IGGKLGSIG---SNARM----GHGEFIVAEADESDGSFLK--LSPSLAVITNIDREHLDF 205 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + GIE+I A + + G+ L DD + + + + KTI ++G AD++ Sbjct: 206 YRGIEDIKDAFLQFANIVPFYGSAVLCLDDPHIKTILSD---IKRKTI-TYGMEPAADYR 261 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT---ADVDTAIK 315 ++ + + E+ + + + V + G N L T+ + L D+ +K Sbjct: 262 AQELRFNGAVTEYELYYRTECLGSVTLSVPGMFNVYNSLATVAVARELDMTFPDIQQGLK 321 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPH 366 + G G+R T++D+ Y +P + A ++ Q+ PH Sbjct: 322 SYV------GVGRRLEVKGKIAGVTVVDD-YGHHPTEISATLAAARQVWKNRMIVVFQPH 374 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---H 423 R A+ + +G +++ DL V +Y S + G AL D + RS+ Sbjct: 375 RYTRTQALFREF--LGAFTEA---DLLIVTDIYPASEDPIEGVTAEALCDGI-RSLTRRE 428 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVK---SSNSCGFYRLINL 463 V Y + ++ + + GD V+ + S NS G L L Sbjct: 429 VRYIPNFSDITDYLMTVVQPGDTVITQGAGSVNSVGVSLLSRL 471 >gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] Length = 485 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 22 DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136 Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 IG P +L + + +++ + E+ SH EI + +V A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ +N DD + Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEY 236 >gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA6140] Length = 506 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 154/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCV 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D ++L+ Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKILNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 425 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + LLE Sbjct: 485 LNMGAGSIN--RVPSALLE 501 >gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] Length = 833 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 124/307 (40%), Gaps = 46/307 (14%) Query: 90 DVLGALNK-------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141 + L ALNK + A L + I +TGS GKTT ++T+ L KT + IG Sbjct: 109 EFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIG 168 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 N G+ + ++ + E S G IR + P +VIT I HLSNF Sbjct: 169 GLNGE-GINGSSGS-----EYFVAEADESD-GSIRNYS----PEFSVITNIDDEHLSNFG 217 Query: 202 GIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 G E A + F KT I + N D S + +S +G ++FG + + D + Sbjct: 218 GDRERLLASLQDFS--TKTRQICWYNGDCS-----RLRSCLVG----HTFGFTSSCDLHI 266 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 ++Q +S+ V+ Q E V +G H N +G+ L D DT AL Sbjct: 267 LTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTIRDALQR 326 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEG 369 F + R +R N L E Y +P+ + + VL+ PH Sbjct: 327 FPGVQRRLQRK----NSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFS 382 Query: 370 RRIAVLG 376 R +G Sbjct: 383 RLKECMG 389 >gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] Length = 485 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 22 DGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEM---KHNVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +DD+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 IDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITR--IGTIEY 136 Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 IG P +L + + +++ + E+ SH EI + +V A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ +N DD + Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEY 236 >gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 144/375 (38%), Gaps = 62/375 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +S+ I F AIKG DGH +IL A +KGA +V D + IP Sbjct: 25 IKKICYNSKFITESSLFVAIKGYITDGHKYILQAYEKGAVCAIV-EDFI----DCEIPQL 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143 V++ L ++ K I+ IT + GKTTT ML + IG+ Y Sbjct: 80 KVENTRIELANVSKNFYDDPSQKLNIVGITATNGKTTTSFMLDKIYNDAGYRTGIIGTVY 139 Query: 144 NNH--IGVPLTLARMPVDVDFGIF------------ELGMSHLGEIRFLTHLVRPHIAVI 189 + I +P L P ++ F + +S E + + +I Sbjct: 140 TKYSDITIPSVLT-TPESLELQSFFRDMLKKKIEKVTMEVSSSSEELYRVKNIDFNIVAF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELL---KAK------- 238 + H+ E+ AK+++ + K LN D D +LL KA+ Sbjct: 199 NNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAILNMDFDHIKDLLTQTKARVITYSLE 258 Query: 239 --SHALGIKTI--------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + I + Y F ++N DF + L+ +S E+ Sbjct: 259 NNDYDFSISELDLSTGFGKYIFNVNRNIDFN-------------DFVLKKQSFEINLSVA 305 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 GY N + + I + DVD K++S F G +R+ ++ F +ID+ Y A Sbjct: 306 GYSSVMNSVAAIIISLVQNIDVDIIKKSISAFS---GVERRFEMIYDEK-FKIIDDHY-A 360 Query: 349 NPASMKAAISVLSQI 363 N ++ + LS++ Sbjct: 361 NVKNIDVTLETLSKM 375 >gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae RC385] gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae RC385] Length = 444 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DVD + EL Sbjct: 114 VIAITGSNGKSTVTD-LSGMLANAAGVKAAVG---GNIGVP-ALDLISPDVDLYVLELSS 168 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 169 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 221 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++ M E+ L Sbjct: 222 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 271 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 272 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 319 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 320 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 369 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 370 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 423 >gi|229087237|ref|ZP_04219383.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44] gi|228696079|gb|EEL48918.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L S+ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ + ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDVNDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ E G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] Length = 494 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 59/336 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ DSR+ F A KG D H F + +G ++VV + Sbjct: 23 VTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ------------ 70 Query: 87 GVDDVLGALNKLAVAARLR--------------SKATIIAITGSVGKTTTKEMLTIALSS 132 +V G + ++ V+ LR + T +TG+ GKT+ M+ + Sbjct: 71 ---EVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRK 127 Query: 133 IKKTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGE 174 + K A +G+ I P T++ ++ VD G + M SH LG Sbjct: 128 LHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS 230 +R V +A+ + + HL +E AK+ +F E L K + LN DD+ Sbjct: 188 LRG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDA 243 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F E L ++ I+++G +A F+ + + E+ + V +G Sbjct: 244 FSEYLA----SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGK 299 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V +T ++A+ P EGR Sbjct: 300 FNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGR 335 >gi|30022759|ref|NP_834390.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 14579] gi|206969750|ref|ZP_03230704.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134] gi|218233375|ref|YP_002369485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264] gi|228910543|ref|ZP_04074357.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 200] gi|228954966|ref|ZP_04116983.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960959|ref|ZP_04122591.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048395|ref|ZP_04193963.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676] gi|229072191|ref|ZP_04205399.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185] gi|229081944|ref|ZP_04214436.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2] gi|229112151|ref|ZP_04241693.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15] gi|229129967|ref|ZP_04258932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4] gi|229147254|ref|ZP_04275609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24] gi|229152887|ref|ZP_04281070.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550] gi|229181005|ref|ZP_04308340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W] gi|229194183|ref|ZP_04321039.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876] gi|296505155|ref|YP_003666855.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis BMB171] gi|33301350|sp|Q816X6|MURC_BACCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226711860|sp|B7H746|MURC_BACC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|29898318|gb|AAP11591.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 14579] gi|206735438|gb|EDZ52606.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134] gi|218161332|gb|ACK61324.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264] gi|228589274|gb|EEK47237.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876] gi|228602562|gb|EEK60048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W] gi|228630707|gb|EEK87353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550] gi|228636212|gb|EEK92687.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24] gi|228653492|gb|EEL09365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228671267|gb|EEL26569.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15] gi|228701532|gb|EEL54026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2] gi|228710929|gb|EEL62896.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185] gi|228723120|gb|EEL74497.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676] gi|228798739|gb|EEM45720.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804693|gb|EEM51295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228849107|gb|EEM93947.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 200] gi|296326207|gb|ADH09135.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis BMB171] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65 HD+ +QG + F +++ RSI+ P F + V++G Sbjct: 22 HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62 Query: 66 GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ N + + + L+IPV LG L S+ T +A+TG+ GKT Sbjct: 63 VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178 +T +L + T IG H GV + + +FE E R FL Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P A++T I H F+ I ++ SA E+ L+ I DD + ++AK Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297 + Y FG ++ DFQ R ++ ++ + +V ++ + G G H N L Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + DV+ L+ F EG +R+ G +ID+ Y +P + A I Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324 Query: 358 SVLSQISPHGE 368 Q P E Sbjct: 325 EAARQKHPERE 335 >gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 484 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 152/369 (41%), Gaps = 33/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS DSR + FFA+ G DG + A +GA +V ++I L +PV Sbjct: 22 VTGISSDSRQVKAGVVFFALAGTKADGAVYAEDAAARGAAAIVAGKG--STIAGLPVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139 VDD AL + A + ++A+TG+ GKT+ E A +SI T Sbjct: 80 AVDDPRLALAQSAARYFGKQPEIMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139 Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 N++ + P+ L ++ ++ D G+ M SH + R L V+ T Sbjct: 140 APGRNDYGSLTTPDPVALHQLLQELADAGVTHASMEASSHGLDQRRLDG-VKLAAGGFTN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248 + H+ IE+ AK +F+ L G IF + S + AK+ L + T+ Sbjct: 199 LGRDHMDYHPTIEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTTVAAKAAGLNVLTV- 257 Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ DF +L++ + + EV+ G E+ G N L++ G+ Sbjct: 258 ----GRHGDFLRLKRVEHERHRQRAEVEADGVLYEIDLPLAGDFQISNALVSAGLAISTG 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V A+ AL GR N G +D Y P +++ +VL+ + P Sbjct: 314 TPVAKALMALEKLKGAPGRLDLVGTTGN-GAPVYVD--YAHKPDALE---NVLASVRPFT 367 Query: 368 EGRRIAVLG 376 GR I V G Sbjct: 368 TGRVIVVFG 376 >gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 470 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 37/288 (12%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138 LS+PV D L A L + IA+ G+ GKTTT ML +AL + + +YA Sbjct: 92 LSVPVVHRSDAL---------ASLMTGLRAIAVAGTHGKTTTTSMLAVALGALGLDPSYA 142 Query: 139 CIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 G N H G D D + E S ++ P +A++ + Sbjct: 143 IGGDLAGPGSNAHHG----------DGDIFVAEADESDRSFQKYA-----PEVAIVLNVE 187 Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H +N++ ++EI + EIF G + GT+ + D L ++ I ++G+ Sbjct: 188 LDHHANYASMDEIYESF-EIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGE 246 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++++ S + V L G+ + G H A N + L + L VD Sbjct: 247 SEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDE 306 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 AL + G G+R + G +ID SY +P M A + + Sbjct: 307 LATALGAY---TGVGRRLQLKGEAGGVQVID-SYAHHPTEMTADLEAM 350 >gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured marine microorganism HF4000_APKG2M17] Length = 455 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 108 ATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164 A IIAITGS GKTTT E+L + + + T+ C ++G P + R D D + Sbjct: 111 AHIIAITGSNGKTTTTELLGHLFRKAGRNTFVC-----GNVGRPFSDDTDRTGPD-DLVV 164 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 E+ L I RP ++++ I P HL ++ I+ A++K I E T Sbjct: 165 LEVSSFQLDHIDSF----RPDVSILLNITPDHLDRYNQDIDRYAASKLRICENQTGVDTF 220 Query: 224 FLNYDD---SFFELLKAKSH-ALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ- 275 N DD + F +A+ ALGI + I + G +N+D LR Q E++ M + Sbjct: 221 IFNQDDERIARFVRKRARGPIALGISITEEIRATGFLRNSDLMLRINDQ--EENLMPTEK 278 Query: 276 --LQGK 279 L+G+ Sbjct: 279 LALRGR 284 >gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus DK 1622] gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus DK 1622] Length = 455 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++ +A R+ S + ITG+ GK+TT + T+ S K+T+ ++G P + A Sbjct: 99 GEVELAGRMLSGVPLFGITGTNGKSTTTALTGTLFASGDKRTF-----VGGNLGRPFSEA 153 Query: 155 RM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 M P D D + EL L IR L RP A I + P H+ + AKA I Sbjct: 154 AMSPGDWDALVVELSSYQLEGIRTL----RPRGAAILNLTPDHIDRYPSHAAYGEAKARI 209 Query: 214 FEGLEKTGTIFLNYDDS 230 F+ + + +N DD+ Sbjct: 210 FQNQQAGDFVVVNADDA 226 >gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus parasanguinis ATCC 903] gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus parasanguinis ATCC 903] Length = 449 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 29/225 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ + Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQG----GLLSGNIGFPASQVAQTATEK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I P IAVIT + P H+ E +AK + + + + Sbjct: 162 DVLVMELSSFQLMGIEAF----HPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEK 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQ 277 I LN++ + L K+ A + F + D +++E ++ + Sbjct: 218 DVIVLNFNQDLAKELATKTKA----RVLPFSTIEKVD-----------GAYLEDGLLKFK 262 Query: 278 GKS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 G++ M G+ G H +N L T+ + + + + + LS F Sbjct: 263 GEAVMRADELGVPGSHNVENALATIAVAKVRGVENEVIKETLSAF 307 >gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M23] gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23] gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 491 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 149/383 (38%), Gaps = 45/383 (11%) Query: 22 VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 +PQ ++G+ +DSR + P +AF A+ G G FI A +GA ++ Sbjct: 10 IPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGV 69 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132 S+ +I V G+ LGA+ A R S+A T++ +TG+ GKT+T ++L A Sbjct: 70 SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 124 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185 + A G+ +GV L +P + LG++R + V H Sbjct: 125 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180 Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +AV T + HL +E AKA +F + + +N DD F L Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAV-INVDD-LFGL 238 Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A G++ + S +AD + + ++ + V +G Sbjct: 239 RLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 298 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L G++ L + LS P GR R Q + Y P ++ Sbjct: 299 DNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 355 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 VLS +S H GR I V G Sbjct: 356 G---QVLSSLSSHVCGRLICVFG 375 >gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 155/398 (38%), Gaps = 50/398 (12%) Query: 9 DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ H++ P G++ID+ + P F A+ G G + AV +GA Sbjct: 5 DLIAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64 Query: 67 LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGK 119 V+V+ + A++G + V V DV A VA+R + +IAITG+ GK Sbjct: 65 AVLVDQQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF----------- 162 T+ M L ++ IG+ + IG +P ++ P D Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 163 -GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 G L + +G LTH + + V T + HL + +E AK +F+GL Sbjct: 181 CGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLC 237 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + + N DD + A L + ++ +AD++ + S + G Sbjct: 238 RCAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDG 291 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + G N L T+ +L + + AL GR +R + ++ G Sbjct: 292 RKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQ--ISGGT 349 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y +P S+ VL+ I GR I V G Sbjct: 350 SVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382 >gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] Length = 494 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 59/336 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I+ DSR+ F A KG D H F + +G ++VV + Sbjct: 23 VTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQ------------ 70 Query: 87 GVDDVLGALNKLAVAARLR--------------SKATIIAITGSVGKTTTKEMLTIALSS 132 +V G + ++ V+ LR + T +TG+ GKT+ M+ + Sbjct: 71 ---EVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRK 127 Query: 133 IKKTYACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGE 174 + K A +G+ I P T++ ++ VD G + M SH LG Sbjct: 128 LHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGR 187 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDS 230 +R V +A+ + + HL +E AK+ +F E L K + LN DD+ Sbjct: 188 LRG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDA 243 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F E L ++ I+++G +A F+ + + E+ + V +G Sbjct: 244 FSEYLA----SVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGK 299 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V +T ++A+ P EGR Sbjct: 300 FNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGR 335 >gi|326202129|ref|ZP_08191999.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium papyrosolvens DSM 2782] gi|325987924|gb|EGD48750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium papyrosolvens DSM 2782] Length = 465 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 14/126 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164 A + A+TGS GKTTT ++ LS ++ Y C +G +IG+PL L+++ + D + Sbjct: 117 AQVFAVTGSDGKTTTTTLIYKILS--EEGYNCWLGG---NIGIPL-LSKIDEVAETDKVV 170 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L IR P +AV+T ++P HL ++E AK IF ++ + Sbjct: 171 LELSSFQLMTIRDC-----PSVAVVTNLSPNHLDVHKSLQEYIDAKKNIFIYQKENEKLV 225 Query: 225 LNYDDS 230 LNYD+ Sbjct: 226 LNYDNE 231 >gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] Length = 516 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 88/392 (22%), Positives = 144/392 (36%), Gaps = 76/392 (19%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79 V I+ DSR + F AI G DG F+ A+ GA +V + + Sbjct: 43 VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102 Query: 80 SLSIPVFGVDDVLGALNKLA---VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + I V + L AL + + LR ++ +TG+ GKT+T ML + Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKHLR----LVGVTGTNGKTSTATMLHRLFERLGYK 158 Query: 137 YACIGSYNNHIGV-----------PLTLARMPVDVDFGIFELGMSH-------------- 171 IG+ N IG P+ LA++ + + + G SH Sbjct: 159 SGLIGTVENRIGNEIIPATHTTPDPIALAQLL----YRMQQAGCSHVFMEVSSHAAHQRR 214 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS- 230 +G + F+ L T + HL ++E AK F+ L +N DD Sbjct: 215 IGSLEFVGGL-------FTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPNAFALVNADDRN 267 Query: 231 ---FFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + AK + G+K+ F K DF+ + W+ + Sbjct: 268 GSVMLQNTSAKKYTYGLKSFADFKAKVVEGDFRGTELLLNDRSVWIPL------------ 315 Query: 287 GIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G A N+ + +L D+ D ++ALS EG R+ G ++D Sbjct: 316 -VGAFNAYNITLVYAAARLLLPDLEQDVLLQALSTIETAEG---RFEVISEGGRIGIVD- 370 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ + + + P G GR I V+G Sbjct: 371 -YAHTPDALIKVLETIRPLVPQG-GRVITVVG 400 >gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] Length = 492 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 152/373 (40%), Gaps = 40/373 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G +ID+R +AP F A +G +G DFI A++ GA VV G+L I Sbjct: 22 VTGFAIDNRKVAPGTVFGAFQGAQVNGEDFIPAAIEAGAVAVVARAAAKVE-GALHI--- 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 D +LA + I+A+TG+ GKT+ EM + A IG+ Sbjct: 78 ASDIPRKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGTLGVT 137 Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + + LT P V F G+ G++H+ G ++ V A Sbjct: 138 TPDESVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGVAVEAAGF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFE---LLKAKSHALG 243 T + HL + +E+ +AK +F+ + G I++ +S + + AK L Sbjct: 195 TNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRGLT 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T+ G+ D +L + + V+ G + IG + N L++ G+ Sbjct: 255 VMTVGEQGE----DIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLA 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D A++ P GR +R A + G ID Y P +++AAI+ L Sbjct: 311 LATGIDASRVWDAVARLQPVRGRLERAVIAPS-GAPVYID--YAHTPDALEAAIAAL--- 364 Query: 364 SPHGEGRRIAVLG 376 PH GR I V G Sbjct: 365 RPHVTGRLITVFG 377 >gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] Length = 508 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/403 (21%), Positives = 161/403 (39%), Gaps = 56/403 (13%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR ++ FFA+ G H++G FI A+Q+G+ ++V D+ ++ V Sbjct: 33 GLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDI--DFYDSNVTYIKV 90 Query: 89 D--DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D ++ ++ A K II +TG+ GK++ + L S+ I + Sbjct: 91 DPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVF 150 Query: 145 NHIG------------------VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHL-VRP 184 G + L L++M +V++ I E SH + R L + Sbjct: 151 LEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIE-STSHGLDDRTSRLLDIEY 209 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALG 243 +AV+T I+ HL ++ AK +F G +N DD+ F + Sbjct: 210 SVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHGGFGIINMDDNHFSVFMN-----S 264 Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I Y++ K++ ADF + K + Q+ E H+ I Y N+ + + Sbjct: 265 INRTYTYSLKNEKADFFISKINE---------QMGFTEFEFYHNKIKYAARVNLTGSFNV 315 Query: 303 VSILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 +++ A +VD + + + + G+ Q F ++D Y P + Sbjct: 316 ENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLIVD--YAHTPGAFL 373 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + +++ + R I+V G E L + ++A+ S Sbjct: 374 KMFPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS 413 >gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99] gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99] Length = 489 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 34/294 (11%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIA 129 N ++VA+ L IPV ++L L R R +A+ G+ GKTTT ++ ++ Sbjct: 94 NPELVAA-RKLRIPVVQRAEMLAEL------MRYRHG---VAVAGTHGKTTTTSLIASVY 143 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + IG N G T AR+ + + + + FL HL +P ++V+ Sbjct: 144 AQAGRDPTFVIGGLLNSAG---TNARL----GHSRYLIAEADESDASFL-HL-QPMVSVV 194 Query: 190 TTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T I H+ + G E++ S + L G + DD L K +G K I Sbjct: 195 TNIEADHMDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVIRELLPK---VGRK-IV 250 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S+G S++AD Q + Q +S ++ +G +EV+ + G H N L + + + Sbjct: 251 SYGFSEDADIQALNFVQQGYRSHFTLRREGVADIEVMVNLPGEHNVLNALAAIAVATEDE 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAI 357 + + ++AL+ F EG G+R++ A ++G L+D+ Y +P+ + A I Sbjct: 311 IEDEAIVRALAEF---EGIGRRFQQLGSFATSKGEVMLVDD-YGHHPSEVTATI 360 >gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii CbuG_Q212] gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212] Length = 465 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152 L + + A L + IA+ G+ GKTTT ML+ A +++ T+ G NN Sbjct: 95 LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211 ++ P V G + + + + FL + P IAV+T I HLS + G + Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 + E + G + L DD + L + + ++G S +A +++ + Q QS Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260 Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328 ++ Q K+ V + G H A N I ++ + +K+L+ F + R Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTI 320 Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354 R L +G LI E Y +P +K Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345 >gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC 43768] gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC 43768] Length = 469 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPD---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334] gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii CbuK_Q154] gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334] gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154] Length = 465 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLT 152 L + + A L + IA+ G+ GKTTT ML+ A +++ T+ G NN Sbjct: 95 LKRGEMLANLMKEYQSIAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNN------- 147 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211 ++ P V G + + + + FL + P IAV+T I HLS + G + Sbjct: 148 -SQTPARVGNGHYFIAEADESDASFL--FMHPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 + E + G + L DD + L + + ++G S +A +++ + Q QS Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIA----PLLSRRVITYGFSSDAQYRVVDYCQQGIQSL 260 Query: 272 MEVQ-LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK- 328 ++ Q K+ V + G H A N I ++ + +K+L+ F + R Sbjct: 261 FQIHSPQRKAPLTVKLSMPGQHNALNATAVTAIADVVRMNEPALLKSLADFPGVDRRFTI 320 Query: 329 RYRCALNQGFFTLIDESYNANPASMK 354 R L +G LI E Y +P +K Sbjct: 321 RGEMILPKG-NALIIEDYGHHPNEIK 345 >gi|75760821|ref|ZP_00740837.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899844|ref|YP_002448255.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842] gi|228903207|ref|ZP_04067341.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 4222] gi|228941870|ref|ZP_04104416.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967789|ref|ZP_04128805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228974796|ref|ZP_04135361.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981390|ref|ZP_04141690.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis Bt407] gi|226711859|sp|B7IKV4|MURC_BACC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|74491675|gb|EAO54875.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540867|gb|ACK93261.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842] gi|228778590|gb|EEM26857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis Bt407] gi|228784924|gb|EEM32938.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791943|gb|EEM39529.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228817804|gb|EEM63883.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228856489|gb|EEN01015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 4222] gi|326942473|gb|AEA18369.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65 HD+ +QG + F +++ RSI+ P F + V++G Sbjct: 22 HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62 Query: 66 GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ N + + + L+IPV LG L S+ T +A+TG+ GKT Sbjct: 63 VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMSQYTSVAVTGAHGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178 +T +L + T IG H GV + + +FE E R FL Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P A++T I H F+ I ++ SA E+ L+ I DD + ++AK Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297 + Y FG ++ DFQ R ++ ++ + +V ++ + G G H N L Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + DV+ L+ F EG +R+ G +ID+ Y +P + A I Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324 Query: 358 SVLSQISPHGE 368 Q P E Sbjct: 325 EAARQKHPERE 335 >gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR + + F A+KG +D F+ ++ GA VV+ TD+ S+ + Sbjct: 18 VKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQWQNN 77 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV + L+ LA K T++ +TG+ GKTT ++L + A + Sbjct: 78 VPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKAAVM 137 Query: 141 GSYNNHIGVPLTLAR----MPVDV-----DF-----GIFELGMSHLGEIRFLTHLVRPHI 186 G+ N + + A+ V+V DF G + +S G ++ ++ Sbjct: 138 GTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEALKFKA 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A+ T ++ HL +E+ A AK F L I LN DD Sbjct: 198 AIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQI-LNADD 239 >gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus gallolyticus UCN34] gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus gallolyticus UCN34] Length = 451 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ K+ G + +IG P + +A+ D Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T + PHIAVIT + P H+ EE +AK I + + Sbjct: 162 DILVMELSSFQL----MGTDIFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L K+ A Sbjct: 218 DFVVLNFNQDLAKELAQKTVA 238 >gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str. Ikeda] gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str. Ikeda] Length = 502 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 149/365 (40%), Gaps = 47/365 (12%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 GAG+VV+ N + A+I S IP+ ++L L +RSK I AI+G Sbjct: 83 NGAGIVVISSAIKHNNPEYQAAI-SAKIPIISRAEMLAEL--------MRSKIAI-AISG 132 Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 S GKTTT ++ + + T G NN T A + D D+ I E S Sbjct: 133 SHGKTTTTALIACIFEACGLHPTVITGGIMNN----KATNAYLG-DGDYFIAEADESDAT 187 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I+ + IAVIT I HL + + + SA + L G DD + Sbjct: 188 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 242 Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285 L AK + + I ++G SKNA Q + S +V+++ + +V Sbjct: 243 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 299 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N L + I L D++ F +G +R+ T+ID+ Sbjct: 300 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 355 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403 Y +PA + A I + I+ +GR IAV + +L F V LY IS Sbjct: 356 YAHHPAEIIATIDIARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 414 Query: 404 VWLSG 408 ++ +G Sbjct: 415 IYDAG 419 >gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem] gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem] Length = 461 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 136/354 (38%), Gaps = 40/354 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT M+ LS I T IG N +G L + G F + Sbjct: 108 IAVAGTHGKTTTTSMVATILSKGGIDPTI-VIGGRLNSLGTNARLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL L+ P IAV+T I HL +SGIEEI E + G L D Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 + + + K S+G S ADF+ K + +G + E+ Sbjct: 218 NGNIADVLPRVK----KRFTSYGMSAQADFRATDVKLSGFSTSFVAHHKGVRLGEITFSM 273 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L +T + + F G G+R+ ++D+ Y Sbjct: 274 PGAHNVLNALAAIAVAMELDIPFETIQEGFAGFG---GVGRRFHLKGEANGIMVVDD-YG 329 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVL 396 +P +KA + PH R + ++ E E ++FH D+ + Sbjct: 330 HHPTEIKATLGAAKAGFAENRLVVVFQPH----RYSRTKELFE--EFVKAFHDADVLILT 383 Query: 397 SLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448 +Y + G AL + + R V + D L ++ L GD+++ Sbjct: 384 DIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVLAPGDILL 437 >gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630] gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-66c26] gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP 107932] gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-63q42] gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC 43255] gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-76w55] gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-97b34] gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-37x79] gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CD196] gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile R20291] gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile QCD-32g58] gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium difficile] gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CD196] gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile R20291] Length = 450 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 77/388 (19%), Positives = 162/388 (41%), Gaps = 59/388 (15%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R IA++G+ GKT+T ML+ YA + P L + + G Sbjct: 98 MREYKNSIAVSGTHGKTSTTSMLSTIFE-----YADLD--------PTILVGGNLSMIGG 144 Query: 164 IFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 ++G S+ F+T P I+++ + HL FSGI+EI ++ + Sbjct: 145 NVKIGNSN----HFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFG 200 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWME 273 + L G +N DD + + A TI +G+ + D ++ S Sbjct: 201 KLLPPEGYFIINGDDENIDDILYDVKA----TIIKYGRDSDNDAVIKDIHFDNSGHGIFR 256 Query: 274 VQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ +G+ + + G H N + + D++T K + ++ +G G+R+ Sbjct: 257 IEYEGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIY---KGVGRRFET 313 Query: 333 ALNQGFF--TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEM 381 +G++ L+ + Y +P +KA ++ ++ PH R ++L Sbjct: 314 ---KGYYKNALVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLL------ 364 Query: 382 GELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439 GE S++F+ D + +Y H L + L ++ Y + + + +++ Sbjct: 365 GEFSEAFYAADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRE 424 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ D D+V+ ++ + Y++ +LL+E+ Sbjct: 425 NVKDNDLVI--TAGAGPIYKVADLLVEK 450 >gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 461 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 19/146 (13%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPV 158 A L S+A IIAITGS GKTTT M+ L+ ++ G +IG P + L P Sbjct: 115 AYLVSEAPIIAITGSNGKTTTTTMIADVLNHGGQSALLSG----NIGYPASEVVLKAEPK 170 Query: 159 D---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 D ++ F+L +G F PHIA+IT + P H+ +E +AK I + Sbjct: 171 DRLVMELSSFQL----MGVDAF-----HPHIALITNLIPTHIDYHGSLENYVAAKWNIQQ 221 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241 + + LN D +L +K+ A Sbjct: 222 RMTNEDYVILNADQELTRVLASKTQA 247 >gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 261 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 34/255 (13%) Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGIKTIYSFGKSKN 255 F IE I + K E+ E L + G NYD+ + + L K K++ GIK I Sbjct: 4 FKTIENIQNTKYELIEDLPEDGIAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKL----- 58 Query: 256 ADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 D + + + S + ++G + +G H N+L +L +++ Sbjct: 59 -DVYAKDIRVNEKGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIK 117 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 + E R + + +ID+++N+NP +AA+SV+ + EG++I + Sbjct: 118 NGIEKVKAVE---HRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIII 171 Query: 375 LGDMCEMGELSQSFH----IDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSET 429 M E+G + + + I++A+V +V L G + A +K AL I +++E Sbjct: 172 TPGMVELGAIEEEENYKIGIEIAKVC-----DYVILVGQKISAPIKRAL---IDNNFNED 223 Query: 430 MDGLFLFIQSSLVDG 444 +F SL DG Sbjct: 224 R----IFTVKSLNDG 234 >gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ +I ITGS GKTTT T ++ + G +IG P + + + D Sbjct: 106 AYLVSESQLIGITGSNGKTTT----TTXIAEVLNAGGQRGLLAGNIGFPASEVVQAANDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ RPHIAVIT + P HL E+ +AK I + Sbjct: 162 DTLVXELSSFQLXGVKEF----RPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSS 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L + A TI F ++ D + KQ + +G++ Sbjct: 218 DFLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQ--------LFYKGEN 265 Query: 281 MEVVHH-GI-GYHMAQNMLMTLGIVSI 305 + V G+ G H +N L T+ + + Sbjct: 266 IXSVDDIGVPGSHNVENALATIAVAKL 292 >gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 476 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 65/375 (17%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IA+ G+ GKTTT M+++ A + + T+ G N H+G L + D Sbjct: 121 IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P I+++T I P H+ + G +E+ L G Sbjct: 181 FLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGL 225 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 L DD E+L +G + + ++G S+NAD+++ ++Q Q + + G+ + Sbjct: 226 AVLCADD---EVLMELVPLVG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERI 281 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336 +V+ + G H A N L + D + AL+ F +G G+R+ L Q Sbjct: 282 DVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADF---QGAGRRFD-QLGQFIRPN 337 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386 G L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 338 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQS 439 +D +L +Y + G A AL RSI + S+T + L + Sbjct: 395 ---VDALIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPILVSDT-EQLGEVLDQ 446 Query: 440 SLVDGDVVVVKSSNS 454 + DGD+++ + + S Sbjct: 447 IIQDGDLILAQGAGS 461 >gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 458 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 26/223 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + +SR++ P + F AI DGHD+I A+ GA T ++A GS + V Sbjct: 4 ALKTNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGA------TKIIAEHGSYKVETIIV 57 Query: 89 DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSY 143 + L L +I +TG+ GKTTT M L +KK A IG Y Sbjct: 58 ESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFY 117 Query: 144 NNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 P+ VD V++ + E+ L + R H + T Sbjct: 118 YGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRI--HGLEFDEVAFT 175 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + HL +E A+AK +F +N DD ++ Sbjct: 176 NLTQDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQ 218 >gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 485 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 83/366 (22%), Positives = 151/366 (41%), Gaps = 38/366 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 22 DGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEM---KHNVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D+ L +A + K II +TG+ GKT++ M+ + I T IG+ Sbjct: 79 VEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITR--IGTIEY 136 Query: 146 HIG---------VPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 IG P +L + + +++ + E+ SH EI + +V A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVS-SHSLEIGRV-EVVDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK ++F L+ +N DD + + L + I S Sbjct: 195 TNLTQDHLDYHITMENYFQAKRKLFLKLKDINNSVINIDDKYGKRL-YDEFIIDNPEIIS 253 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G D + + +++++ + + +V +G N L +GIV + Sbjct: 254 YGID-GGDLE----GDYLDDGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLKIGIS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +K +S GR + C Q + ++D Y P ++ I I G Sbjct: 309 MEEILKRVSTIKAAPGRFEALDCG--QDYKVIVD--YAHTPDALVNVIVAARNIK---NG 361 Query: 370 RRIAVL 375 RI + Sbjct: 362 NRIITI 367 >gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] Length = 486 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 145/377 (38%), Gaps = 57/377 (15%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + F IKG DGH +I A +KGA + ++ D+ + V+ Sbjct: 26 VEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKGARVFLIQDDVDFKEDCTYVK---VE 82 Query: 90 DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---YN 144 D + K+A K +I +TG+ GKT+ + L + K IG+ ++ Sbjct: 83 DTRKTMAKVAANFCEHPADKFDVIGVTGTNGKTSITTFINEILRNCNKKVGLIGTIKIFD 142 Query: 145 NHIGVPLTLARMPVDVDF-GIFE------------------LGMSHLGEIRFLTHLVRPH 185 VP + + P VD IF+ L +S + + F Sbjct: 143 GDNEVP-SNSTTPESVDLQKIFKRMVDNGCDCCAMEVSSHSLELSRVDDTNF-------K 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241 I + T + P HL +E AK ++F + T +N DD +E +K Sbjct: 195 IGIFTNLTPDHLDFHKTLENYRKAKEKLFH--KTTQANIINVDDEGGRKIYEAIK----- 247 Query: 242 LGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ T Y++G +ADF + K + + + ++ G N L + Sbjct: 248 -GLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTPNHTEDIFIPVPGKFTVYNTLAVI 306 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISV 359 +L D + + +L G R+ N +G ++D Y P +++ +V Sbjct: 307 AACEMLGIDKEDYLNSL---RNTGGVAGRFETVPNDKGISVIVD--YAHTPDALE---NV 358 Query: 360 LSQISPHGEGRRIAVLG 376 L+ EG IAV G Sbjct: 359 LNTAREFVEGDLIAVFG 375 >gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] Length = 495 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 149/383 (38%), Gaps = 45/383 (11%) Query: 22 VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 +PQ ++G+ +DSR + P +AF A+ G G FI A +GA ++ Sbjct: 14 IPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGV 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132 S+ +I V G+ LGA+ A R S+A T++ +TG+ GKT+T ++L A Sbjct: 74 SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 128 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH-- 185 + A G+ +GV L +P + LG++R + V H Sbjct: 129 LGVRSATCGT----LGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 184 Query: 186 -----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +AV T + HL +E AKA +F + + +N DD F L Sbjct: 185 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAV-INVDD-LFGL 242 Query: 235 LKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A G++ + S +AD + + ++ + V +G Sbjct: 243 RLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNV 302 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L G++ L + LS P GR R Q + Y P ++ Sbjct: 303 DNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDAL 359 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 VLS +S H GR I V G Sbjct: 360 G---QVLSSLSSHVCGRLICVFG 379 >gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium narugense DSM 14796] gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium narugense DSM 14796] Length = 464 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 41/290 (14%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +IPV G D++ L L I +TG+ GKTT E + K Y G Sbjct: 97 NIPVVGELDLVFGL--------LPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAG 148 Query: 142 SYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 ++G P L+ + D+ G + EL + FL +P IA+IT + H+ Sbjct: 149 ----NVGTP--LSEIIYDIVTGSNLVLELSSYQIENSIFL----KPKIAMITNLTLDHID 198 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 ++ ++E +AK +F+ E +I+ N DD + E K+ L K + SK DF Sbjct: 199 RYANLDEYFNAKVHLFKNQENGYSIY-NKDDPYLE-KNIKNLTLKTKIL---NVSKRKDF 253 Query: 259 QL------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + + + + + L S++ G H +N L + + + + Sbjct: 254 SIAGVIENKIFVKDNLDFVKIIDLSDLSLK------GEHNIENALFVASSLYLSSVEPKH 307 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 KALS F E R +R+ ++G T I++S + NP S A+ + Sbjct: 308 IEKALSTFSGVEHRQERFYT--HKG-ITWINDSKSTNPESTIVALKTWGE 354 >gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] Length = 490 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLARCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRMIVVFG 378 >gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 463 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 89/380 (23%), Positives = 159/380 (41%), Gaps = 38/380 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVF 86 D++ A EA A+ + GH + A VVV++ + +A L IPV Sbjct: 40 DAKESATAEALRALGATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVV 97 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYN 144 D L +L LR IA+ G+ GKTTT ML ++LS + + +YA G + Sbjct: 98 HRSDALASLMD-----GLRP----IAVAGTHGKTTTTSMLAVSLSELGLRPSYAIGGDLD 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 P + A G E+ ++ E H P +A++ + H +N++ ++ Sbjct: 149 ----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMD 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 EI + + + K GT+ +N D L + A G++ + ++G +++AD ++ Sbjct: 199 EIYESFETFVDRIAKGGTLVVNADHEGARELTWRVTASGVRVV-TYGDAEDADVRVLSVA 257 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 +S + V L G+ + G H A N + L L + AL+ + Sbjct: 258 PQGLKSEVTVLLDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAY---T 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G +R + +ID SY +P M A + + + G+ R + V + Sbjct: 315 GVKRRLQLKGEAAGVQVID-SYAHHPTEMTADLEAMRAAA--GDARILVVF--QPHLFSR 369 Query: 385 SQSFHIDLAEVLSLYNISHV 404 +Q ++ E L+L + S V Sbjct: 370 TQELGKEMGEALALADGSLV 389 >gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus vestibularis F0396] gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus vestibularis F0396] Length = 450 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ + Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTNQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L +++A Sbjct: 218 DFVILNFNQDLAKELATQTNA 238 >gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 45/301 (14%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 L K T +AITGS GKT+T +++ L S+K T IG GV D Sbjct: 98 GELIKKYTSVAITGSHGKTSTTGLMSHVLGSLKTTSYLIGD-GTGKGVE----------D 146 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 F L E FL + P A+ T I H + IEE+ +A + ++ Sbjct: 147 GEYFVLEADEYRE-HFLAY--EPDYAIFTNIDFDHPDFYHNIEEVFAANRKFAHQVKN-- 201 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGK 279 + DD + + LK + ++ +G N DF + + + ++ S +V +QGK Sbjct: 202 KVIAYGDDPYLQKLKDEV------DVWYYGID-NDDFDIVAKDIVRNTKGSHFDVWVQGK 254 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 H G H N L +G + D + +AL+ F +G + R N+ F Sbjct: 255 HYGNFSIHTFGQHSILNSLAVIGFCYLEGFDPEDVQEALTSF-----KGVKRR--FNERF 307 Query: 339 FT--LIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +I + Y +P+ +KA I +V+S PH R +A+L E + S Sbjct: 308 VEDMVIVDDYAHHPSEIKATIDAARQQYPDKAVISVFQPHTYSRTLALLDQFAEALDKSD 367 Query: 387 S 387 + Sbjct: 368 A 368 >gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid adding enzyme) [Neisseria meningitidis 8013] Length = 445 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGKKNGVVFIDDSKGTNVGATAAAITGLQN 343 >gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis N1568] Length = 445 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|300173070|ref|YP_003772236.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887449|emb|CBL91417.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 444 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 31/265 (11%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + T IA+ G+ GKT+T +L L +I T IG GVP + + Sbjct: 103 QTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVPNS-------------Q 148 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 ++ E R P A++T I H F IE++ +A ++ ++K IF Sbjct: 149 FFVAEADEYRRHFKDYAPDYAILTNIDFDHPDYFKNIEDVTNAFSDFANHVKK--AIFAW 206 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284 DD+ L+ K+ T+Y +G S +N DF + ++ S V +G+++ E Sbjct: 207 GDDAHLRALRPKA------TVYYYGTSPENDDFVAENIHKSTQGSHFNVTFRGETLGEFS 260 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLID 343 G H N L + + + D+D + L + +G + R + Q T+ID Sbjct: 261 VPLFGQHSILNALAVIAVAYMEKVDLDLIREYLMTY-----QGVKRRFSEKQIADITVID 315 Query: 344 ESYNANPASMKAAISVLSQISPHGE 368 + Y +P + A + Q P+ + Sbjct: 316 D-YAHHPTEIDATLDAARQKYPNKQ 339 >gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256] gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256] Length = 469 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 145/361 (40%), Gaps = 44/361 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDAADIYATDIESVGAQMKFTVHVQMKGHEQAPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ + L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGF---EGVGRRFQKYGDMKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 V 448 + Sbjct: 448 L 448 >gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 129/333 (38%), Gaps = 52/333 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A+ G H DGHD + A++KGA ++V + + +++PV Sbjct: 25 VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNVPVI 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V++ A+ LA K +I +TG+ GKTT ++ ++ IG+ Sbjct: 80 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 139 Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVR 183 + I TLA M D G+ + M LG + + + Sbjct: 140 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDY--- 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FE 233 IAV T + HL + + AKA +F L GT LN DD FE Sbjct: 194 -DIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFE 252 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A +H L +FG +A + + S + ++ + G V IG Sbjct: 253 QYTA-AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNV 305 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 NML D IK+L +GR Sbjct: 306 YNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGR 338 >gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ K+ G + +IG P + +A+ D Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAVIT + P H+ EE +AK I + + Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L K+ A Sbjct: 219 DFVVLNFNQDLAKELAQKTAA 239 >gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M6190] gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis ES14902] Length = 445 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus salivarius SK126] gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus salivarius SK126] Length = 450 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTAQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGIDSF----HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNQMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L ++ A Sbjct: 218 DFVVLNFNQDLAKELATQTKA 238 >gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis alpha275] Length = 429 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 69 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 120 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 121 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 178 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 179 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 234 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 235 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 291 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 292 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 347 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 348 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 407 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 408 LNMGAGSIN--RVPAALLE 424 >gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT 5369-93] gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT 5369-93] Length = 440 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVGG---NIGVP-ALDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++M E+ L Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLVARNEAFMACAELSL----- 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans CH34] gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans CH34] Length = 471 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 149/369 (40%), Gaps = 43/369 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +AI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 VAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P + VIT I H+ + + A E + L G L Sbjct: 160 EADESDASFLNLF--PVMEVITNIDADHMDTYGHDFARLKQAFVEFTQRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKS---M 281 DD + E+L S K + +G +++A + + Q V QL G + + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRQLNGHAEPPL 272 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGF 338 ++V + G H QN L + I + L + +KAL FH R +RY G Sbjct: 273 DIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGVGRRFQRYGEVATPDGSGT 332 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+D+ Y +P M A ++ P RR+ + F D +VL Sbjct: 333 FTLVDD-YGHHPVEMAATLAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFVKVLGT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G + D AL R++ V + E ++ + I +++ GDVV Sbjct: 388 VDALLLAEVYAAGESPIVAADGRALTRALRVANKVEPVFVEQIEDMPQAILNAVRPGDVV 447 Query: 448 VVKSSNSCG 456 V + S G Sbjct: 448 VTMGAGSIG 456 >gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 155/398 (38%), Gaps = 50/398 (12%) Query: 9 DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ H++ P G++ID+ + P F A+ G G + AV +GA Sbjct: 5 DLMAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64 Query: 67 LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGK 119 V+V+ + A++G + V V DV A VA+R + +IAITG+ GK Sbjct: 65 AVLVDQQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF----------- 162 T+ M L ++ IG+ + IG +P ++ P D Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 163 -GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 G L + +G LTH + + V T + HL + +E AK +F+GL Sbjct: 181 CGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLC 237 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + + N DD + A L + ++ +AD++ + S + G Sbjct: 238 RRAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLTVDASGSRFTLHHDG 291 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + G N L T+ +L + + AL GR +R + ++ G Sbjct: 292 RKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQ--ISGGT 349 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y +P S+ VL+ I GR I V G Sbjct: 350 SVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382 >gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M13/05/1] Length = 488 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLARCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRMIVVFG 376 >gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus vestibularis ATCC 49124] gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus vestibularis ATCC 49124] Length = 450 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ + Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNYGGKS----GVLSGNIGFPASEVAQSVTNQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGIESF----HPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L +++A Sbjct: 218 DFVILNFNQDLAKELATQTNA 238 >gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] Length = 493 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +++DSR+I + F A+ G DG FI A+ +GA V+V+TD + G + GV Sbjct: 23 LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDKIDEQGKVIATEQGVQ 82 Query: 90 DVLGAL-NKLAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 L +++ A +R I+ ITG+ GKT+T ++ ++ ++ A +G+ Sbjct: 83 IYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGKAAVMGT 142 Query: 143 YNNHIGVPL-----------TLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAV 188 N + L TL R + D G+ M S G ++ V +AV Sbjct: 143 LGNGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAV 202 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE 215 T + HL +E A AK +F Sbjct: 203 FTNLTRDHLDYHGDMENYAEAKQMLFR 229 >gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 505 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 145/371 (39%), Gaps = 42/371 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ISIDSR + F ++G G +F A ++GA V+ + + L+IP V Sbjct: 36 ISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSE----RVDDLAIPQLIVK 91 Query: 90 DVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS--YN 144 D G LA A SK +I +TG+ GK+TT ++ L + IG+ YN Sbjct: 92 DA-GEACGLASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIGTIVYN 150 Query: 145 N---HIGVPLTLARMP---------VD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + H T + P VD + E + + R L AV T Sbjct: 151 DGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCLY--DRAVFT 208 Query: 191 TIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTI 247 + P HL +E AK ++F + + +N DD + E + + H LG Sbjct: 209 NLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKIANEFAPHVLG---- 264 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSME-VVHHGIGYHMAQNMLMTLGIVSI 305 +S + + F + M++ G ++E V +G + N L + Sbjct: 265 FSLRQKADNAFYGSIRRSSIRGIIMDISFPDGSTLENVTLPLLGEYNVLNALAASSVAWS 324 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + K L P GR +RY + G +ID Y P +++ VLS + P Sbjct: 325 LDFDAEVIRKGLENCPPVPGRLERY--FVEDGPVCIID--YAHTPDALE---KVLSTVKP 377 Query: 366 HGEGRRIAVLG 376 GR V G Sbjct: 378 LCSGRVWLVFG 388 >gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum R] gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum] gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R] Length = 486 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 38/337 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140 IPV D+LG L +T + I G+ GKT+T M +A+ + + ++A Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G N + + G E+ ++ E +P++AV+T + P HL F Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259 E + + G + + +D L +S GIKT+ Y + A + Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263 Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + +E + + + G+ + V+ G HM N L ++ DVD Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323 Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368 ++ LS F G +R+ A+ G F I + Y +P + A +S +++ G+ Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 GR I + + F + AE LSL + + V Sbjct: 381 GRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVL 415 >gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria meningitidis ATCC 13091] gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria meningitidis ATCC 13091] Length = 445 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 529 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 37/288 (12%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138 LS+PV D L A L + IA+ G+ GKTTT ML +AL + + +YA Sbjct: 151 LSVPVVHRSDAL---------ASLMTGLRAIAVAGTHGKTTTTSMLAVALGALGLDPSYA 201 Query: 139 CIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 G N H G D D + E S ++ P +A++ + Sbjct: 202 IGGDLAGPGSNAHHG----------DGDIFVAEADESDRSFQKYA-----PEVAIVLNVE 246 Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H +N++ ++EI + EIF G + GT+ + D L ++ I ++G+ Sbjct: 247 LDHHANYASMDEIYESF-EIFAGRIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGE 305 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S+ AD ++++ S + V L G+ + G H A N + L + L VD Sbjct: 306 SEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDE 365 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 AL + G G+R + G +ID SY +P M A + + Sbjct: 366 LATALGAY---TGVGRRLQLKGEAGGVQVID-SYAHHPTEMTADLEAM 409 >gi|192359638|ref|YP_001983384.1| UDP-N-acetylmuramate--L-alanine ligase [Cellvibrio japonicus Ueda107] gi|190685803|gb|ACE83481.1| UDP-N-acetylmuramate--alanine ligase [Cellvibrio japonicus Ueda107] Length = 474 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 105/428 (24%), Positives = 185/428 (43%), Gaps = 73/428 (17%) Query: 63 KGAGLVV----VNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV VN +G+ L IPV ++LG L R R IA+ G+ Sbjct: 74 QGADVVVNSSAVNNTNPEVVGARELRIPVVRRAEMLGEL------MRYRHG---IAVAGT 124 Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT +L +A + + T+ IG N G L + + + + Sbjct: 125 HGKTTTTSLLASILAAADLDPTF-IIGGLVNSTGTNAQLG-------GSRYLVAEADESD 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 FL HL +P +A++T I H+ + G F L+KT FL ++ F+ L Sbjct: 177 ASFL-HL-QPMVAIVTNIDADHMETYGG----------DFSRLKKTFVEFL-HNLPFYGL 223 Query: 235 LKAKSHALGI--------KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 I + I ++G +++ DF+ +Q S +V L+ + E +H Sbjct: 224 AVVCGEDPVIRDIIPDVARPILTYGFNEHCDFRATNIRQDKMSSEFDV-LRPGNPEPLHI 282 Query: 287 GIGYHMAQNMLMTLGIVSILTAD--VDTAIKA-LSVFHPKEGRGKRYRCALN----QGFF 339 + N+L ++++ T + D+AI+A L+ F +G G+R++ N G Sbjct: 283 RLNIPGIHNVLNATAVIAVATDEGISDSAIQAGLANF---QGVGRRFQVYGNFPVGDGST 339 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 L+D+ Y +P + A I + P RR+ ++ ++ + D EVLS Sbjct: 340 MLVDD-YGHHPREVAAVIKAVRDGWPE---RRLVMVYQPHRFTR-TRDLYEDFVEVLSTV 394 Query: 400 N---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 + + V+ +G + D+ L RSI + ET+DG+ I+ + GD+V+ Sbjct: 395 DALVMLEVYSAGEEPIPGADSRHLCRSIRARGVIEPVFVETVDGVPDVIKDLVRAGDIVI 454 Query: 449 VKSSNSCG 456 + + + G Sbjct: 455 TQGAGNVG 462 >gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 491 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 146/374 (39%), Gaps = 42/374 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + P F I G DGH F A + GA ++ + +++PV Sbjct: 23 IDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELGAVAIIAEKTV-----DVTVPVI 77 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA ++ ITG+ GKTT ++ + + IG+ Sbjct: 78 YVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMY 137 Query: 145 NHIGVPL---------------TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG + T M ++ V + E+ L + R + +AV Sbjct: 138 RKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVMEVSSHALVQGR--VYGSDYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHAL 242 ++ HL +EE A AK+ +F L +N DD+ ++ + A Sbjct: 196 FMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKVAVINIDDAESSRMQTATAA- 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG K ADF+ K S S +++ + + IG N+L + Sbjct: 255 ---HVITFGIKKQADFRASNIKIASHGSTFDLRTPVGNFTLKIKMIGNFSVYNVLAAIAT 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ AI + +GR + + Q F ++D Y+ P S+ ++VL Sbjct: 312 SFALKIPINNAIATVEDIPGVKGRFE--LVSAGQDFPVIVD--YSHTPDSL---LNVLQT 364 Query: 363 ISPHGEGRRIAVLG 376 I E R ++G Sbjct: 365 IDEFAEKRVFVIVG 378 >gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 325 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DS + P + F + G H DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV T ++ HL +E A+AKA++F + + +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRV-INLDDDFGRRLAGEEQ 246 >gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 493] gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella burnetii RSA 331] gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella burnetii CbuG_Q212] gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 493] gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 331] gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii CbuG_Q212] Length = 442 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GKTT ++ + + + + + G +IG P+ L ++ + D+ + EL Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T +R A I I+ H++ ++ +++ AK I Y D Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205 Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281 F ++ A H K SFG + ADF L + Q + Q + + +Q + Sbjct: 206 CFIPIVNADEPEIWRHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 HH QN L L + + ++ + L F G R+RC + + + Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHVLRDFS-----GIRHRCQWVRKYKEI 314 Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++S N + +AAI L Q + +G+ I + G + + S L +V+ Y Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + V L G L+ L + ++++M+ + GD+V++ S +C + Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423 Query: 460 L 460 + Sbjct: 424 M 424 >gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] Length = 495 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 10 LLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L++ +G I I+ Q + + ++++I F IKG +D HD I V++GA Sbjct: 3 LIENAEGLDIEIISGELQDEFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 VVV D I I V V D AL +L+ A + K II ITG+ GKTT+ Sbjct: 63 AVVVQKD----IKRDDICVIKVSDTRVALARLSAAYFSHPAKKMKIIGITGTKGKTTSSY 118 Query: 125 ML 126 ML Sbjct: 119 ML 120 >gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9215] gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9215] Length = 514 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 155/392 (39%), Gaps = 40/392 (10%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG F + A++ GA ++ + Sbjct: 13 VGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS+ + ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173 L + K A G+ +N G A + + +F I E+ + Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230 + R A+ T + HL S +E K ++F EK G LN+DD Sbjct: 193 QKRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVLNHDDH 250 Query: 231 FFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287 + L + + + + T + + +N DF K+ +E S + +++ Sbjct: 251 WISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFVPL 310 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFFTLIDE 344 +G N + + I+ L + K + F GR ++ + +++ T+I + Sbjct: 311 VGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRSLPTVIVD 370 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +K VL I EG+ I V G Sbjct: 371 -YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398 >gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella burnetii Dugway 5J108-111] gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii Dugway 5J108-111] Length = 442 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GKTT ++ + + + + + G +IG P+ L ++ + D+ + EL Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T +R A I I+ H++ ++ +++ AK I Y D Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205 Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281 F ++ A H K SFG + ADF L + Q + Q + + +Q + Sbjct: 206 CFIPIVNADEPEIWRHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 HH QN L L + + ++ + L F G R+RC + + + Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHVLRDFS-----GIRHRCQWVRKYKEI 314 Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++S N + +AAI L Q + +G+ I + G + + S L +V+ Y Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + V L G L+ L + ++++M+ + GD+V++ S +C + Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423 Query: 460 L 460 + Sbjct: 424 M 424 >gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp. SPB74] gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp. SPB74] Length = 474 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 26/181 (14%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV+G + +A RLR A +A+TG+ GKTTT ML L + A + Sbjct: 95 VPVWG---------DVELAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAV 145 Query: 141 GSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 G +IGV L LA P DV EL L VRPH A + +AP HL Sbjct: 146 G----NIGVSLLDAVLAEEPYDVL--AVELSSYQL----HWAPSVRPHSAAVLNLAPDHL 195 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNA 256 + A+ K I+EG + ++ D + +L++A G + I ++ G + + Sbjct: 196 DWHGSMAAYAADKGRIYEG-NQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPS 254 Query: 257 D 257 + Sbjct: 255 E 255 >gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis 961-5945] gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis G2136] Length = 445 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPRNELLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGKKNGVVFIDDSKGTNVGATAAAITGLQN 343 >gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6578] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 26/280 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L AI+ + V ++ DSR + FFA+ G H DGH F+ A+++GA VV Sbjct: 1 MLDAIKPEEVRGEGDPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVV 60 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 ++ + + + +I +TG+ GK++T + Sbjct: 61 HERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQL 120 Query: 130 LSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDF------GIFELGMSHLGEIRFLTH 180 L + CI + G P L + + F + E G +H + +H Sbjct: 121 LRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTH-AVVEATSH 179 Query: 181 LVRPHIA----------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + P A V+T I H+ E+ K +F GL + G LN DD Sbjct: 180 GLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEEGKAVLNLDDP 239 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 L ++ A G+ Y G + A R W + E+S Sbjct: 240 SSGFLAERTRA-GVWG-YGLGAREGA----RLWAEVREES 273 >gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI 454] gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia rhizoxinica HKI 454] Length = 487 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 149/366 (40%), Gaps = 42/366 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 132 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 183 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 184 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 241 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEV 283 DD + E+L S K I +G ++ AD +R C+ M + +++ Sbjct: 242 DDPNVREILPFVS-----KPIIRYGFAQEAD--VRATHVCARDGRMHFTVHRADAAPLDI 294 Query: 284 VHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341 V + G H QN L + I + L AD D AL+ F+ R +RY L +G L Sbjct: 295 VLNLPGTHNVQNALAAIAIATELEVADADIQ-SALAEFNGVGRRFQRYGEVPLTRGGAYL 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400 + + Y +P M A I+ P RR+ ++ F D +VLS + Sbjct: 354 LIDDYGHHPVEMAATIAAARGAFPD---RRLVLVFQPHRYTRTRDCFE-DFVKVLSTVDA 409 Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 ++ V+ +G + D AL R+I V + +T+D + + + + DGDVV+ Sbjct: 410 LVLTEVYAAGEAPIVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMVADGDVVMTM 469 Query: 451 SSNSCG 456 + S G Sbjct: 470 GAGSIG 475 >gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 149/381 (39%), Gaps = 47/381 (12%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F A G DG FI A+ +GA ++V + G+ + V VD+ AL LA AA Sbjct: 37 FVAASGTAEDGARFIPDALARGATVIVAGPGIALPEGAKAALVT-VDEPRKALGLLA-AA 94 Query: 103 RL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS---------YNNHIGVP 150 R R ++ +TG+ GKTT ++ ++ K +G+ + + P Sbjct: 95 RCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRWPGVTRDASLTTP 154 Query: 151 LTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 L A D + E L + R + V T + HL + Sbjct: 155 DCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAG--LSFAAGVFTNLTQDHLDYHKDM 212 Query: 204 EEIASAKAEIF-EGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQL- 260 E +AKA++F E L T LNYDD F LLK A+G Y K+ +L Sbjct: 213 ETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVG----YGLTKAPAGFARLL 268 Query: 261 ----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 R + + + ++ EV G H A N+L +G L +T A Sbjct: 269 VGGIRSHDR--DGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYET-FDA 325 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L+ H GR +R A G +D Y P +++ +VL GR AV G Sbjct: 326 LADCHGAPGRLERIPNA--SGLTVFVD--YAHTPDALE---NVLGAAREFTAGRLFAVFG 378 Query: 377 DMCEMGELSQSFHIDLAEVLS 397 C G+ ++ +AE +S Sbjct: 379 --CG-GDRDRTKRPRMAEAVS 396 >gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] Length = 488 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 39/372 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A + ++A+TG+ GKT+ S ++ +A G + Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVA-------SFTRQIWAYAGFPAAN 132 Query: 147 IGVPLTLARM-----------PVDVDFGIFEL---GMSHLG--------EIRFLTHLVRP 184 IG + M PV++ + EL G++H + R L VR Sbjct: 133 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRL 191 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 192 AAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAG 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + G+ N L++ + + +EV++ + E+ G N L+ G+ Sbjct: 252 CDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAM 310 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A++AL++ GR A G +D Y P +++ +VL+ + Sbjct: 311 VTGVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVR 364 Query: 365 PHGEGRRIAVLG 376 P GR I V G Sbjct: 365 PFTTGRVIVVFG 376 >gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000] gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000] Length = 465 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 24/199 (12%) Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 D+V +I V G ++ A L I++TG+ GKTTT ++ +SS Sbjct: 99 DIVKEAKKRNIKVIG---------EIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIISS 149 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 KK +G+ N + D+ + EL L + HI+VI I Sbjct: 150 YKKA-RLLGNVGNTFSKEVESIEKDEDI---VLELSSFQLETVDNF----HSHISVILNI 201 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-----ELLKAKSHALGIKTI 247 A HL + IE+ +AK I + + LNYD+S+ EL+K K + + T Sbjct: 202 AEDHLDRYKDIEDYFNAKKNITKNQNSNDFLILNYDNSYTNSYYNELIKTKDISFNVLTF 261 Query: 248 YSFGKSKNADFQLRKWKQC 266 + K+K A+ +C Sbjct: 262 ST--KNKEANLYYNSEDEC 278 >gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] Length = 454 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 42/353 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IAI GS GKTTT M+ L IG G L R G F + Sbjct: 109 IAIAGSHGKTTTTSMVGTVLGKTGFDPTVVIGGKLEAYGSNAKLGR-------GEFLVAE 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + FL + P I I I HL + +E+I +A E + G + N DD Sbjct: 162 SDESDGSFLK--LTPTIVSINNIDLEHLGFYKDLEDIKNAFVEFANKVPFYGFVVANIDD 219 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288 + + + + I FG SK+AD + K + + ++ G+ +H + Sbjct: 220 ENVKSIIPRIE----RKIIKFGLSKDADIRGYDLKLVNGRYKFKINDFGE----IHLSVP 271 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L T+ I + L ++L F + +R+ + G + D Y Sbjct: 272 GIHNVYNALATISICNELGVPFCVIKESLENFKNAK---RRFEIKYSDGILVIDD--YAH 326 Query: 349 NPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLS 397 +P +KA +S ++S PH R ++ + E SF I D+ + Sbjct: 327 HPTEIKATLSAARDMYGQNRIISVFQPHRYSRVYSLFDEFVE------SFDIPDIVIITD 380 Query: 398 LYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +Y+ + G L D + R +V Y + ++ ++S + +GDVV+ Sbjct: 381 IYSAGENPIEGVSGQLLADKIRQRRNNVFYVKDVNEAESLLKSIIKNGDVVLT 433 >gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 491 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 93/400 (23%), Positives = 154/400 (38%), Gaps = 50/400 (12%) Query: 7 FHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL+ H++ P G++ID+ + P F A+ G G + AV +G Sbjct: 3 LSDLIAGQDHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARG 62 Query: 65 AGLVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSV 117 A V+V+ + A++G + V V DV A VA+R + +IAITG+ Sbjct: 63 AVAVLVDEQAPTLPAAMGDVC--VLRVPDVRKA--AAVVASRYFGEPGRAMDLIAITGTN 118 Query: 118 GKTTTKEMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF--------- 162 GKT+ M L ++ IG+ + IG +P ++ P D Sbjct: 119 GKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRD 178 Query: 163 ---GIFELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 G L + +G LTH + + V T + HL + +E AK +F+G Sbjct: 179 RACGSVVLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG 235 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L + + N DD + A L + ++ +AD++ + S + Sbjct: 236 LCRRAVV--NADDP----VGAGIRKLMPGAVTTYALDGDADYRASDLAVDASGSRFTLHH 289 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G+ G N L T+ +L + + AL GR +R + + Sbjct: 290 DGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQ--IPG 347 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 G ++D Y +P S+ VL+ I GR I V G Sbjct: 348 GTSVIVD--YAHSPDSLN---KVLTTIRGFARGRVITVFG 382 >gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium colombiense DSM 12261] gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium colombiense DSM 12261] Length = 457 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 44/300 (14%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV G D VA ++ K +I +TGS GK+TT T+ + + K Y + Sbjct: 96 IPVIGEIDF--------VAPHIKGK--VIGVTGSNGKSTT----TMLIGHLLKKYGYKTA 141 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG PL+L ++DF + EL L + HL++ H+A++T +AP H+ Sbjct: 142 VAGNIGNPLSL-HASQNLDFIVIELSSFQL----YWAHLLKSHVAIVTNLAPDHIDWHGS 196 Query: 203 IEEIASAKAEIFEGLEKTG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADF 258 AKA + L++ G + N D +L S + ++Y G+ D Sbjct: 197 FTNYLKAKARLVR-LQEPGHWAVVQNRDVDALQL----SGKSAVASLYWEGQEPVHKTDA 251 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + +Q + S+ + +L +V IG H +N+ MT + + K LS Sbjct: 252 YICMGEQEAWLSYNKKELLFDYRDV--DLIGRHNLENLAMTASALILGGVPCSNLTKQLS 309 Query: 319 VFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 F P +RC ID+S N A+ A++ + G ++ +LG Sbjct: 310 DFIPLP-----HRCTFVAEINGVRYIDDSKGTNVAASATALTSI-------HGPKVVILG 357 >gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 498 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 20/232 (8%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I +P+ +N + +DSR + P++ F A+KG DGH+FI A+ K V+ Sbjct: 14 IKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAVLSEVSERKQH 73 Query: 79 GSLSIPVFGVDDVLGALNK--LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSS 132 G ++ L+K ++ R S+ +I ITG+ GKTT +++ Sbjct: 74 GKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTVTQLINQWSEL 133 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------- 185 + A +G+ N L I S L +++ +T V H Sbjct: 134 LGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSVTIEVSSHGLVQNRV 193 Query: 186 ------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 A+ T + HL +++ AK +F I LN +D + Sbjct: 194 KNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTD-HTVNKIILNANDKY 244 >gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 490 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 39/372 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L A + ++A+TG+ GKT+ S ++ +A G + Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVA-------SFTRQIWAYAGFPAAN 134 Query: 147 IGVPLTLARM-----------PVDVDFGIFEL---GMSHLG--------EIRFLTHLVRP 184 IG + M PV++ + EL G++H + R L VR Sbjct: 135 IGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRL 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 AAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAG 253 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + G+ N L++ + + +EV++ + E+ G N L+ G+ Sbjct: 254 CDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAM 312 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A++AL++ GR A G +D Y P +++ +VL+ + Sbjct: 313 VTGVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVR 366 Query: 365 PHGEGRRIAVLG 376 P GR I V G Sbjct: 367 PFTTGRVIVVFG 378 >gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 458 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 43/326 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + + +A+ + +IPV ++LG + + + T + ++G+ GKTTT MLT L Sbjct: 82 DNEELAAARAKNIPVITRAELLGEI--------MTNYKTAVGVSGTHGKTTTTSMLTEIL 133 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAV 188 + GS + + V L + ++ G + ++ E FL+ P I + Sbjct: 134 VN--------GSLDPTVSVGGILPSIHGNLRIGHSDNFVTEACEYTNSFLSFF--PTIEI 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247 I I HL F I +I ++ L + G + +N D D+ E+ K + + Sbjct: 184 ILNIEEDHLDFFKDINDIRNSFGRYVRLLPENGLLVINNDIDNVEEIYKNAACP-----V 238 Query: 248 YSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVS 304 + GK+ +AD+ + + S+ ++ QG ++ + + G H N L + + Sbjct: 239 ITVGKTPDADYTADNISFDEFGCPSYDLIR-QGNTIGRIALSVPGIHNVYNSLAAIAVAI 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------ 358 L D+ T I +L FH G +R++ FT+ID+ Y +PA + A I+ Sbjct: 298 HLGIDISTIIDSLKGFH---GTDRRFQKKGTVNGFTIIDD-YAHHPAEINATINSAMNYP 353 Query: 359 ---VLSQISPHGEGRRIAVLGDMCEM 381 ++ PH R A L D ++ Sbjct: 354 HKKLVIIFQPHTYTRTKAFLKDFADV 379 >gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] Length = 519 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 95/408 (23%), Positives = 159/408 (38%), Gaps = 70/408 (17%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + L+ ++ H+ PQG + DSR + P + F A G DG + A+ +GA Sbjct: 21 EALEWLRAHA----PQG---ALRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAAC 73 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------RSKATIIAITGSVGK 119 +V + V + FG + V AL L A L + ++A+TG+ GK Sbjct: 74 LVEREGVEAF------RFGAEGV-AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGK 126 Query: 120 TTTKEMLTIAL-----SSIKKTYAC--IGSYNNHIGVPLTLARM------PVDVD----- 161 T+T + AL S + C IG+ +GVP +L PV + Sbjct: 127 TSTTWWIADALNLLAGSGLATHGGCGLIGTLG--VGVPPSLQGTGLTTPDPVRLQQAFAG 184 Query: 162 -----FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE- 215 G + S +G +R +AV T HL +G+ AK+ +F+ Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244 Query: 216 -GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 GL+ +N DD L S L + I + S +L Q + +W E Sbjct: 245 PGLQAA---VVNIDDPRGGEL---SDTLAQRPIDLWTTSITGPARL----QARDVTWGEG 294 Query: 275 QLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 L+ E V IG++ N+L + + L ++ A+ A + P GR + Sbjct: 295 GLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRME 354 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +++ L+ Y P +++ A+ L ++ GR V G Sbjct: 355 ----LIHEPGQPLVAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFG 398 >gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] Length = 517 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 145/370 (39%), Gaps = 37/370 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR IAP + F A G DG + A+ +GA +V VA+ + P + + Sbjct: 39 DSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAPGASLASLP 98 Query: 93 GALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 G L A +AA+ + + ++A+TG+ GKT+T L AL+ K+ C + Sbjct: 99 G-LKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPVCALAGTLG 157 Query: 147 IGVPLTLA----------------RMPVDVDFGIFELGMSHLG--EIRFLTHLVRPHIAV 188 +GVP L R VD + S +G + R +R A+ Sbjct: 158 LGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGTQIR--AAI 215 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T HL + AK +F+ GL+ +N DD L A+ A + Sbjct: 216 FTNCTQDHLDYHGSMAAYWRAKRALFDWPGLQAA---VINIDDPAGAQLHAE-LAGRVPD 271 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++S A R ++ V+ + IG++ QN+L L + L Sbjct: 272 LWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLATLRSL 331 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A++A + P GR ++ AL ++D Y P ++ A+ L ++ Sbjct: 332 GWPLAEALQAGAGLQPVPGRMQQL--ALAGQPLVVVD--YAHTPDALAKALQALRPLAAR 387 Query: 367 GEGRRIAVLG 376 GR V G Sbjct: 388 RAGRLWCVFG 397 >gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M01-240013] Length = 506 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 147/367 (40%), Gaps = 44/367 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S + E R VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLSAAR--GAYLEKR--LVLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484 Query: 448 VVKSSNS 454 + + S Sbjct: 485 LNMGAGS 491 >gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 515 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84 V + +DSR +A AF A+KG DG DFI AV GA +++ D G S+ Sbjct: 30 MVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDTQQEHGQTSMRE 89 Query: 85 ---VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + D+ L+ LA S+ II +TG+ GKT+T ++ + + + K A Sbjct: 90 QSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQLAALLNKRAAS 149 Query: 140 IGS 142 IG+ Sbjct: 150 IGT 152 >gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC 13091] gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC 13091] Length = 469 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 ++ + V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDVLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus bovis ATCC 700338] gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus bovis ATCC 700338] Length = 452 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 13/157 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ K+ G + +IG P + +A+ D Sbjct: 107 AYMISAAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIA+IT + P H+ EE +AK I + + Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAIITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + LN++ + L K+ A + F +K D Sbjct: 219 DFVVLNFNQDLAKELAQKTAA----QVVPFSTTKKVD 251 >gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio vulnificus YJ016] gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus YJ016] Length = 442 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 31/300 (10%) Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LVV N + + + + V+G + A AA +IAITGS GK+T + Sbjct: 69 ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 LT +++ IG +IGVP L + +V+ + EL L E HLV Sbjct: 125 -LTGVMANACGVKCAIGG---NIGVP-ALDLLEQEVELYVLELSSFQL-ETTTSLHLV-- 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A ++ H+ + G+++ AK IF+ K G + N DD + SH Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQS 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG S + +F + + +SW+ Q +G H N+L+ L +++ Sbjct: 231 LALVTFG-SDDKEFGVMSHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361 D + AL + G +RC A N+G +++S N AS +AA+S L+ Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340 >gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium johnsoniae UW101] gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium johnsoniae UW101] Length = 487 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 87/383 (22%), Positives = 143/383 (37%), Gaps = 65/383 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + + F AI+G DGHD+I A+Q GA ++ D + + Sbjct: 24 IQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQLGAKAIIC--DKLPENIQKDVTYI 81 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML---------------TIA 129 V D AL +A +K ++ +TG+ GKTT +L T+ Sbjct: 82 QVKDTNTALAFMAANYFGDPSAKLKLVGVTGTNGKTTIASLLFQLFEKAGFKVGLLSTVK 141 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT------HLVR 183 + K Y + + + + L M E G++H F+ H R Sbjct: 142 IVVDKTEYPATHTTPDSLTINHYLNEMA--------EAGVTHC----FMEVSSHGIHQKR 189 Query: 184 PHI-----AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + T ++ HL E K F+ L KT + N DD ++ Sbjct: 190 TEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSLPKTAFVLSNIDDKNGSVMLQN 249 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMA 293 + A K + L+ + Q +E QL G ++V + IG A Sbjct: 250 TAA------------KKLTYALKSYADYRAQ-ILESQLSGLLLKVNDNEVWVKLIGTFNA 296 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L G L D A++ LS GR +Y + N G ++D Y P ++ Sbjct: 297 YNVLAIYGTAVELGIDSLEALRLLSDLESVSGRF-QYIVSDN-GITAVVD--YAHTPDAL 352 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 + + ++ I E + I V+G Sbjct: 353 ENVLKTINDIRTKNE-QLITVVG 374 >gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM 17629] Length = 459 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M++ L + + + I V L+ + ++ G E +S Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229 E RP ++I I HL F I +I + E G +N + D Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285 S+ E++ + I ++G DF K C+ + M QG + V Sbjct: 226 SYEEIVAGLP-----QKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + G H N L + + + L D ++ + L F G +R++ T+ID+ Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334 Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P ++A ++ + PH R A L D ++ LS + + LA++ Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391 Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +S +L L L + ++ HY + + + F+ + V+GD+++ Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443 >gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 480 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 120 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 171 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 172 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 229 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 230 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 285 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 286 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 342 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 343 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 398 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 399 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 458 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 459 LNMGAGSIN--RVPAALLE 475 >gi|229163681|ref|ZP_04291629.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803] gi|228619818|gb|EEK76696.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803] Length = 436 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H FS I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFSDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. C150] gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. C150] Length = 450 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L+ K+ G + +IG P + +A+ Sbjct: 106 AYLVSEAPIIGITGSNGKTTTTTMIADVLNHGGKS----GVLSGNIGFPASEVAQSVTAQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I PHIAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGIDSF----HPHIAVITNLMPTHIDYHGSFEAYVAAKWNIQNRMTSD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 I LN++ + L K+ A Sbjct: 218 DFIILNFNQDLAKELATKTKA 238 >gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] Length = 495 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 47/271 (17%) Query: 21 IVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 +V G V+ GI DSR + + F + G DGHD+ A+ GA +VV ++ Sbjct: 15 VVGDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAAALVVEREL---- 70 Query: 79 GSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + +P V D A+ LA + R+R +I ITG+ GKTT ++ + Sbjct: 71 -DVPVPQLVVKDARHAMAVLADYMFDSPSRRMR----MIGITGTNGKTTITYLIEKIMKD 125 Query: 133 IKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH---- 185 IG+ G P++ P V+ + M+ G ++ V H Sbjct: 126 AGVNTGLIGTIQMRYGGQSYPMS-GTTPEAVELQRYLGNMAEQG-VQCCVMEVSSHALEQ 183 Query: 186 ---------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--------EKTGTIFLNYD 228 A+ T + HL + +EE +AK +F L + LN D Sbjct: 184 GRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDSKYAVLNAD 243 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 D L+A++ A + ++G K +D Q Sbjct: 244 DPASSYLQAQTAA----QVITYGVEKESDVQ 270 >gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703] gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703] Length = 469 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 152/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P ++V+T I H+ + ++++ A + + G FL Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A +S P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLSAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I + Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDVV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + L+E Sbjct: 448 LNMGAGSIN--RVPSALVE 464 >gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 445 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F + ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEQEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 1587] gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae MZO-2] gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 1587] gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae MZO-2] Length = 440 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP +L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-SLDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++ M E+ L Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 464 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 41/333 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159 A L +A G+ GKTTT ML A+ ++ T+ G + + + Sbjct: 100 AELGRGLKTLAAAGTHGKTTTSSMLATAIDALGLDPTFVVGGMVDAY--------KTNAK 151 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218 G + + + + FL + P++A++T + P HL +++ GI+EI A+ + Sbjct: 152 SGTGEYYVVEADESDGSFLN--LSPYVALVTNVEPDHLDHYTGGIDEIRDTFAKFMSSVP 209 Query: 219 KTGTIFLNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G + DD EL++ A++ A K +Y++G + D + + S ++ + Sbjct: 210 DEGACVVFGDDP--ELVRIARASA---KRVYTYGLGEGNDIVVSGYSTKGISSTFDLSMP 264 Query: 278 GKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 S + G H A N LG+V L DV A + ++ + G +R+ Sbjct: 265 DGSNVTCTLKKNPGLHNALNAAGILGVVFALGLDVAAAAEGIADY---TGVRRRFDLVGE 321 Query: 336 QGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQ 386 T++D+ Y +P +KA +S V + PH R A L D E + Sbjct: 322 AAGVTVVDD-YAHHPTEIKATLSAAAGLDFKRVFALFQPH-RYSRTASLTD-----EFGK 374 Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +F D+ ++ +Y + G + DA+ Sbjct: 375 AFADADVLRIMDVYPAGEAPIEGVSGKLIADAV 407 >gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M6190] gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M0579] Length = 506 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 485 LNMGAGSIN--RVPAALLE 501 >gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113] gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113] Length = 477 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 60/410 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--I 128 N ++ A+ G L IPV ++L L + IA+ G+ GKTTT ++ + Sbjct: 90 NPEVRAARGRL-IPVVPRAEMLAELMRFRYG---------IAVAGTHGKTTTTSLIAGIL 139 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +++ T+ IG N IG L + G + + + + FL L++P +AV Sbjct: 140 GEANLDPTF-VIGGQVNSIGANSRLGK-------GEYLVAEADESDASFL--LLQPLLAV 189 Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKT 246 IT + H+ + G + +A E L G + DD ELL + Sbjct: 190 ITNVDADHMDAYGGDFIALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPDIG-----RP 244 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVS 304 + ++G K AD+QL+ KQ ++ +V GK + VV + G H A N L + + Sbjct: 245 VLTYGTCKEADYQLQALKQIRARTQFQVARPGKDNWLTVVLNLPGAHNALNALAAIAVAH 304 Query: 305 ILTADVDTAIKA-LSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISV 359 L D+AI+ L F G G+R++C A G L+D+ Y +P + A + Sbjct: 305 ELGV-ADSAIQRFLKGF---SGIGRRFQCYGEIATPAGKVLLVDD-YGHHPRELAATLEA 359 Query: 360 LSQISPHGEGRRIAVLGD---MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHV 411 + P RR+ V+ +L ++F +D+ +L +Y V + G Sbjct: 360 IRVGWPE---RRLVVIFQPHRYTRTRDLFEAFIQVLSQVDVLFLLEVYPAGEVPIGGADS 416 Query: 412 LALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 AL A+ R I V E ++ + L + L +GD+++ + G Sbjct: 417 RALWQAIQARGQVRPILVEDKEIIEEMLLDL---LREGDLLLTVGAGDIG 463 >gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] Length = 485 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 86/398 (21%), Positives = 153/398 (38%), Gaps = 51/398 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIG 79 P V+GI +DSR +A + F A+ G DG D+I A+ GA ++ + + G Sbjct: 15 PNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAILAEGSSLRYEENGG 74 Query: 80 SLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 ++ + + GV + L +A R AT+I +TG+ GKT+ + + Sbjct: 75 AVCVFMPGVKEQLS-----EIAGRFFNHPSRHATLIGVTGTNGKTSVTHLAAQLAEKLGY 129 Query: 136 TYACIGSYN---------------NHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLT 179 T A IG+ + + V L+ + + DF E+ L + R Sbjct: 130 TAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAMEVSSHALVQRR--V 187 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAK 238 +R AV T I+ HL + AK +FE E + +N DD + + L+ Sbjct: 188 EALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDFELNHRV-INLDDRYLRDWLEGA 246 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S+ L I S A+ Q+ + + +G+ + +G N++ Sbjct: 247 SNGLSI----SLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFSTPLLGRFNVYNVVS 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I+ + + P GR + A G L+ Y P +++ Sbjct: 303 AVAIMLAQKQSLTAIAQHCRHLSPVPGRME----AFQAGSSALVVVDYAHTPDALQ---Q 355 Query: 359 VLSQISPHGEGRRIAVL--------GDMCEMGELSQSF 388 VL + H +G+ V G +MG+++ F Sbjct: 356 VLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEF 393 >gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei U32] gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei U32] Length = 465 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 33/300 (11%) Query: 110 IIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNN-----HIGVPLTLARMPVDVDF 162 + I G+ GKT+T MLT+AL + ++A G N H G + Sbjct: 114 VACIAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGANAHHG------------EG 161 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G+F + + + FLT+ P +AV+T + P HL + E E + G Sbjct: 162 GVF-VAEADESDGSFLTY--SPSVAVVTNVEPDHLDHHGTAEAYTKVFTEFVSRIVPGGL 218 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKS 280 + + DD + L ++ LG++ + +G++ D ++ ++ + + + L G+ Sbjct: 219 LIVCGDDPAADDLGRQAEDLGVR-VRRYGRTATGPGDARILEYVPAPDGGVVRLVLDGEE 277 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + V G HMA N + L L A V + L+ F G +R+ G Sbjct: 278 VSVRVAVPGEHMALNAIAALLAGIELGAPVPGLVDGLAAFG---GVRRRFEFKGRAGDVR 334 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + D+ Y +P + A + + + G GR I V + +++F ++ AE LSL + Sbjct: 335 VYDD-YAHHPTEVAAQLRAVRTAA--GSGRVIVVF--QPHLYSRTKTFSVEFAEALSLAD 389 >gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] Length = 492 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 26/252 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + +DSR + P + F AIKG DG FI A++ GA ++ D + S P++ Sbjct: 20 VNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAIIA--DRLCEFESDFEPLY 77 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V ++ L LA + ++ +TG+ GK+TT M+ A IG+ Sbjct: 78 LVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTTTAMIAHLAQFCHTQAAIIGTLG 137 Query: 143 ---------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP---HIAVIT 190 N + L R+ D+ +L + + H V AV T Sbjct: 138 YGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAMEVSSHGLVQHRVDQCYFKAAVFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL ++ AK +F + I LN DD E K ++ + Sbjct: 198 NLSRDHLDYHGDMQSYGDAKLMLFRDFDADHVI-LNQDDGQAEQWIEK---YSFNSLICY 253 Query: 251 GKS----KNADF 258 G+ KNA F Sbjct: 254 GRKNLAPKNAQF 265 >gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter sp. Fw109-5] gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter sp. Fw109-5] Length = 461 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 32/178 (17%) Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104 +D DF A LVVV+ + ++ + +PV+G ++ +AAR Sbjct: 63 HDAEDFTR------ADLVVVSPGVPMALAEVVRARAAGVPVWG---------EVELAARF 107 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + I+AITG+ GK+TT + + ++T+ ++G PL + D G Sbjct: 108 LAGVPIVAITGTNGKSTTTALAGALFARHRRTF-----TGGNLGTPLCQHVL----DGGG 158 Query: 165 FELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E+ ++ L + L +RP +A I + P HL + +++ A+AKA +F GL++ G Sbjct: 159 AEVVVAELSSFQMEGLLSLRPRVAAILNVTPDHLDRYRDVDDYAAAKARLF-GLQQPG 215 >gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani ATCC 19707] gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosococcus oceani ATCC 19707] gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] Length = 519 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 27/236 (11%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VN 71 SIG V + ++ +S+DSR +AP FFA +G GH I AV +GA +V V+ Sbjct: 31 SIGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIVYDPVIPVS 90 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIA 129 + + +IP+ + D+ + +A LR + ++ +TG+ GKT+ L A Sbjct: 91 PAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTSVSHFLAQA 150 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFLTHLVRPH- 185 L +G+ G+ TL P+ + +L IR+ V H Sbjct: 151 LHRQGIPCGLVGTLGK--GLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVLEVSSHA 208 Query: 186 ------------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A+ T ++ HL + +AK +F E + +N DD Sbjct: 209 LEQGRVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQPELRHAV-INIDD 263 >gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TMA 21] gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TMA 21] Length = 467 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F L + Q E + + E+ +G Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAELSL--VG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ + A+ AL K G +RC A N G +++S Sbjct: 297 RHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA VL+ + L Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V +P + ++M+ + I++ L GD+V++ S +C + Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRTQLKSGDMVLL--SPACASF 446 >gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus downei F0415] gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus downei F0415] Length = 451 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S++ II ITGS GKTTT M+ L++ ++ G +IG P + +A D D + Sbjct: 110 SESPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGFPASEVAMTATDQDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + PH+AVIT + P H+ EE +AK + + + + Sbjct: 166 MELSSFQLMGVETF----HPHMAVITNLMPTHIDYHGTFEEYVAAKWHLQDQMTAGDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN++ + L K+ A T+ F + D Sbjct: 222 LNFNQDLAKDLATKTQA----TVVPFSTQEEVD 250 >gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL001PA1] gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA2] gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA3] gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA4] gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL060PA1] gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA2] gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL103PA1] Length = 499 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 23/257 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + + G H G F AV+ GA V+ + D +P+ Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEAGVPII 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ V T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 VVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV----------- 188 + G L AR P D M+ G + + +A+ Sbjct: 136 FRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTCFDVV 195 Query: 189 -ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + HL + ++ +AKA +F L + G I N DD L + A G+K Sbjct: 196 AFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVI--NVDDPRGRQLVERMQANGVKA 253 Query: 247 IYSFGKSKNADFQLRKW 263 + + + +D+Q+ W Sbjct: 254 VTT-SIHQPSDYQVTSW 269 >gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] Length = 487 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 150/391 (38%), Gaps = 41/391 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S+ P VN I DSR + + F AI G DGHDFI A ++GA Sbjct: 4 LKDILYKVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAI 63 Query: 67 LVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 ++ D V I + D AL +A ++ ITG+ GKTT Sbjct: 64 AIICEQMPEDFVNGITYVQ-----TSDTAQALAVMASNYYENPSENLKLVGITGTNGKTT 118 Query: 122 TKEML----TIA------LSSIK-----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165 +L T A LS++K + + + + + + LA M V++ Sbjct: 119 IATLLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNEAGVEYCFM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + + R T + + T ++ HL E K F+ L KT Sbjct: 179 EVSSHGIHQKR--TEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNLPKTAFALS 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD +++ + A + ++ AD++ Q E + + L+ EV Sbjct: 237 NIDDKNGQVMLQNTRAKKV----TYALKSFADYR----AQILENQFTGLLLKVNDQEVWV 288 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG A N+L +L A++ LS GR + A + ++D Sbjct: 289 KLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISA--KKITAIVD-- 344 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++K + ++ I E I V+G Sbjct: 345 YAHTPDALKNVLETINDIRTKNE-ELITVVG 374 >gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa DSM 16922] gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa DSM 16922] Length = 443 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 41/246 (16%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEM---------LTIALS-SIKKTYACIGSYN 144 ++++ A+R +++ IIAITGS GKTTT + L + L +I K++A + + + Sbjct: 90 ISEIEFASRF-TESKIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQLVAED 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGI 203 H ++ + E+ L +IRF +P+IA+I I P HL + + Sbjct: 149 PH--------------EYYVIEISSFQLDDIRFF----KPYIAIILNITPDHLDRYENNF 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ A +K I E N DD L + KT +S + +K Sbjct: 191 DKYAHSKFRITENQTDKEYFVYNVDDEKINELIKELKIKANKTSFS--------MKDKKQ 242 Query: 264 KQCSEQSWMEVQLQGKS--MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K + + E++ S M + G IG H N L +IL D ++LS F Sbjct: 243 KAYANEKIFEIKDNDNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDF 302 Query: 321 HPKEGR 326 E R Sbjct: 303 KSVEHR 308 >gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] Length = 493 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 83/380 (21%), Positives = 153/380 (40%), Gaps = 49/380 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-- 83 V+ + +DSR + P F A+ G DG FI A+++GA + V + G++ I Sbjct: 24 LVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIID 83 Query: 84 --PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV +D + L+ +A +I +TG+ GKTT +++ L + A +G Sbjct: 84 DVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAVMG 143 Query: 142 SYNN---------------HIGVPLTLARMP-VDVDFGIFELGMSHL--GEIRFLTHLVR 183 + N + + TL+ + + E+ L G ++ L+ Sbjct: 144 TTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAA- 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHAL 242 V T ++ HL +EE A+AK +F + I +N DD ++ S+A+ Sbjct: 203 ---GVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCERAI-INVDDEVGHQWASQLSNAI 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME----VQLQGKSMEVVHHG--IGYHMAQNM 296 + N +F+ W +E S+ E ++ GK H IG A N+ Sbjct: 259 AVSL------KANTEFESAIW--ATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNL 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ + L + ++ P GR + ++ ++D Y P +++ A Sbjct: 311 MLAFATLLSLGKEKQALLETAGQLQPVLGRMELFQT--EDRAKVVVD--YAHTPDALEKA 366 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L H EG+ A+ G Sbjct: 367 LQAL---RVHCEGQLWAIFG 383 >gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] Length = 529 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 36/226 (15%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G++P + I S + P F AI+G DGHDFI A+ +GA + VV V + Sbjct: 23 GVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFIDQALARGA-VAVVAEKEVDARD 81 Query: 80 SLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 ++++ V + L L+ + A +ARL ++ +TG+ GKTTT ++ L K Sbjct: 82 AVTVRVADARNALALLSAVFYGAPSARL----VLVGVTGTNGKTTTAALVEHILVKAGKQ 137 Query: 137 YACIGSYN-NHIGV----PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP------- 184 IG+ N ++G PLT P D M+ G +TH+V Sbjct: 138 VGVIGTGNFRYVGRRFKNPLT---TPESADLQHILRDMATAG----VTHVVMEVSSHALA 190 Query: 185 ---------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 +A+ T + HL +E K +F G G Sbjct: 191 QQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGTRSVG 236 >gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 454 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 173/424 (40%), Gaps = 56/424 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H +G +F + K G+ D V + I + +D++ Sbjct: 54 DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 100 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + L++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 101 IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 153 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P I++I I P H+ + +E + K Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKF 209 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + + N DD E ++ ++ + K I S K K AD + +++ + Sbjct: 210 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 260 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + ++ GI H +N L + IL D + + L + P E R + + Sbjct: 261 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELF- 317 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N G I++S N S K AI I + G + +L+ Sbjct: 318 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 362 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 LAE++ NI V+L G +++ L + V Y + + I++SL D K Sbjct: 363 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKD 418 Query: 452 SNSC 455 S+ Sbjct: 419 SDEV 422 >gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] Length = 511 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 85/395 (21%), Positives = 156/395 (39%), Gaps = 46/395 (11%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG + + A++ GA ++ + Sbjct: 13 VGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS+ + ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGSYNNH------IGVPLT----------LARMPVDVDFGIFELGMSHLG 173 L + K A G+ N + + T A + + +F I E+ + Sbjct: 133 LKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDS 230 + R A+ T + HL S +E K ++F EK G LN+DD Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVLNHDDH 250 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV------QLQGKSMEVV 284 + L S L +++ K ++F+ + +++ + E+ + +++ Sbjct: 251 WISKL---SSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREKIQLF 307 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTL 341 +G N + + I+ L + K + F GR ++ + N + T+ Sbjct: 308 VPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRSLPTV 367 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 I + Y P +K VL I EG+ I V G Sbjct: 368 IVD-YAHTPDGLK---KVLQSIKKLCEGKLITVFG 398 >gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 488 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG] gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF] gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp. Tu6071] gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp. Tu6071] Length = 470 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140 IPV D L AL + +AI G+ GKTTT ML ++L+++ +YA Sbjct: 94 IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G + P + A G E+ ++ E H P +AV+ + H +N+ Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + IEEI + + GT+ ++ D L + + ++G +++AD ++ Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRV 254 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K S + V L GK + G H A N + L Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294 >gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 334] gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella burnetii CbuK_Q154] gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 334] gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii CbuK_Q154] Length = 442 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 54/361 (14%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GKTT ++ + + + + + G +IG P+ L ++ + D+ + EL Sbjct: 108 IIAITGSNGKTTVTTVVGLMMKAAGRNVSVCG----NIGEPV-LEQITPEPDYYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T +R A I I+ H++ ++ +++ AK I Y D Sbjct: 163 FQLE----TTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRI-------------YTD 205 Query: 230 SFFELLKAKS-----HALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGKSM 281 F ++ A H K SFG + ADF L + Q + Q + + +Q + Sbjct: 206 CFIPIVNADEPEIWCHLPFNKKPLSFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKL 265 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 HH QN L L + + ++ + L F G R+RC + + + Sbjct: 266 NARHH------LQNALAALALGTAAKIPIENMLHLLRDFS-----GIRHRCQWVRKYKEI 314 Query: 342 --IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++S N + +AAI L Q + +G+ I + G + + S L +V+ Y Sbjct: 315 DYYNDSKGTNVGATRAAIESLGQAA---KGQLILIAGGQGKGADFS-----PLKDVVKRY 366 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + V L G L+ L + ++++M+ + GD+V++ S +C + Sbjct: 367 -VKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL--SPACASFD 423 Query: 460 L 460 + Sbjct: 424 M 424 >gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] Length = 469 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140 IPV D L AL + +AI G+ GKTTT ML ++L+++ +YA Sbjct: 94 IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G + P + A G E+ ++ E H P +AV+ + H +N+ Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + IEEI + + GT+ ++ D L + + ++G +++AD ++ Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRV 254 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K S + V L GK + G H A N + L Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294 >gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis DSM 16069] gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis DSM 16069] Length = 444 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 58/342 (16%) Query: 32 IDSRSIAPQEAFFAIKGP----HYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVF 86 +D+R IAP P ++G F + + G+ + D+ A+ S + V Sbjct: 37 MDTRDIAPGHEELEKLAPGSLLKWNGQQFTEYDELVVSPGIAIARDDIQAAQES-GVSVI 95 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 G ++ N L V IAITGS GK+T +++ +++ K A +G + Sbjct: 96 GDIELFAQANTLPV----------IAITGSNGKSTVTDLVGELINASGKK-ALVGG---N 141 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP L + ++ D+ EL L R L P A + ++ HL + +E Sbjct: 142 IGVP-ALDLLKLEGDYVALELSSFQLESTRSL----EPVAATVLNVSEDHLDRYKNYQEY 196 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK I+ K T +N DD + A+S + I FG S N+D Sbjct: 197 IDAKRSIY---AKARTCLVNADDENTWIKSAESG----QNILRFGLSNNSD--------- 240 Query: 267 SEQSWMEVQLQGKSMEVVHHG-----------IGYHMAQNMLMTLGIVSILTADVDTAIK 315 + W + ++ ++H G G H A N+ + L +V I A+++ Sbjct: 241 -KIDWA---VDFETCTIMHDGNEILKLDELTLQGIHNALNVAVALALVDI--AEIELTQA 294 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L +G R + + T I++S N + AAI Sbjct: 295 VLDAAKSYQGLPHRSQLVAIKDGITFINDSKATNVGATVAAI 336 >gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC 49989] Length = 464 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 55/365 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IAI+G+ GKTTT M+++ L++ KK + I V L+ + ++ G E Sbjct: 110 TSIAISGTHGKTTTTSMVSLILNNAKK--------DPTILVGGNLSDINGNLKIGKSEYF 161 Query: 169 MSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 ++ E FL +RP + +I I HL F IE IA + E + K G + + Sbjct: 162 VTEACEYMDSFLN--LRPKVELILNIDSDHLDYFDDIEHIAKSFRAFAELVPKDGLV-IG 218 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADF----------QLRKWKQCS-EQSWMEVQ 275 YD + F K+ + + +FG S+ +D+ L +K C+ E V+ Sbjct: 219 YDANPF----VKAALKNVSNVVTFGFSRGSDYVAEDIEFDHQGLPSFKICNGENVVANVK 274 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CAL 334 L+ G H QN L L D L+ F G +R+ + Sbjct: 275 LKIP---------GEHNIQNALAAAACTHTLGVDGSDIENTLNEF---SGINRRFDIVGM 322 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELS 385 G L+D+ Y +P ++A + ++ PH R A+ D LS Sbjct: 323 IGGSVKLVDD-YAHHPTEIEATLDAAKKMKHNRLWCLFQPHTYTRTKALFSDFAPA--LS 379 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ I + E+ + I+ LS ++ +K P V++ E M+ + F+ +L Sbjct: 380 KADIIVMNEIYAAREININKLSAKSIVEDIKKRFPEK-EVYFFEDMEDMAGFVYENLKIN 438 Query: 445 DVVVV 449 D+V+ Sbjct: 439 DLVIT 443 >gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti B1/94] Length = 488 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649] gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649] Length = 972 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156 S+ I+A+TG+ GKTTT M+ + + + + + L ARM Sbjct: 497 SRVPIVAVTGTNGKTTTSRMIAHIMKGVGRKVGMTSTDGIVVDERLVFKADASGPKSARM 556 Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKA 211 + VDF + E+ G +R R +AV+T +AP HL + +E++A KA Sbjct: 557 VLQNPRVDFAVMEVARG--GILREGLGYDRNDVAVVTNVAPDHLGLRGINTVEQLADVKA 614 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK 238 I E + + G LN DD ++ + Sbjct: 615 VIVEAVPRNGFAVLNADDPLVRKMRKR 641 >gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium chlorochromatii CaD3] gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium chlorochromatii CaD3] Length = 464 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 22/234 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDFG 163 KA ++ ITG+ GKTTT ++ + K + + G+P + LA P DV Sbjct: 104 KARMVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVLAMQPNDV--A 161 Query: 164 IFELGMSHLGE-IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTG 221 + EL L I F P +++IT I P HL + ++ A AK IF + Sbjct: 162 VIELSSYQLERSISF-----HPQVSLITNITPDHLDRYGQNMQRYAEAKYRIFMNQQAGD 216 Query: 222 TIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 T N DDS + S A+ +++ +FG + QL K + + + V+ + Sbjct: 217 TFIYNQDDSMLQAAFGASQIAVPCRSV-AFGLEPLTNVQLDKRRVLVNGNMVVVRQNDGA 275 Query: 281 M-------EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + EV++ G H N+L + + L + +AL+ F E R Sbjct: 276 LQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVEHR 329 >gi|72161512|ref|YP_289169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Thermobifida fusca YX] gi|122063271|sp|Q47QX1|MURD_THEFY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|71915244|gb|AAZ55146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobifida fusca YX] Length = 465 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Query: 95 LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-- 151 + + +A RLR + +A+TG+ GKTTT ML L + + +G ++G P+ Sbjct: 95 IGDVELAWRLRPAGQVWLAVTGTNGKTTTVRMLEAMLRADGRRALAVG----NVGTPVID 150 Query: 152 -TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LA P D EL L + V+PH A I +AP HL G+E A+AK Sbjct: 151 AALADGPDRWDILAVELSSFQL----HWSATVQPHAAAIINLAPDHLDWHGGMEPYAAAK 206 Query: 211 AEIFEGLEKTGTI-FLNYDDSFFELLKAKSH 240 A+++ GTI +N D L A++H Sbjct: 207 AKVY----GAGTIRIVNAADPALREL-AETH 232 >gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 484 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 157/374 (41%), Gaps = 59/374 (15%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + + T+ IG N G T AR+ + I E Sbjct: 120 IAIAGTHGKTTTTSLIATIFAQAELDPTF-VIGGLLNSAG---TNARLGSS-QYLIAEAD 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S HL +P ++V+T I P H+ + G +++ + L G L Sbjct: 175 ESDAS----FVHL-QPMVSVVTNIEPDHMETYQGDFDKMQDTYIDFLHNLPFYGLAVLCI 229 Query: 228 DDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVH 285 DD L + IK Y ++G S+NAD + K QS + ++ ++V Sbjct: 230 DDPVITELLPR-----IKRKYLTYGYSENADVRATNVKHRFNQSEFTLIRKDHDDIQVTV 284 Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAIK-ALSVFHPKEGRGKRYRC----ALNQGF 338 + G H N+L +L +++ T + D+AIK AL+ F G G+R+ A G Sbjct: 285 NAPGKH---NVLNSLAAIAVATDENIADSAIKTALANF---SGIGRRFEMLGEFATGDGD 338 Query: 339 FTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSF 388 L+D+ Y +P ++A I+V PH R + D + LSQ Sbjct: 339 VLLVDD-YGHHPTEVEATIAVARNNWPDRRLVMAYQPHRYSRTRDLYEDFVRV--LSQ-- 393 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLV 442 +D+ +L +Y+ + G A +L RSI Y L + +L Sbjct: 394 -VDVLLLLDVYSAGEEKIEG----ADSKSLCRSIRQRGQLEPIYVADKSELPKLLADNLS 448 Query: 443 DGDVVVVKSSNSCG 456 D D+++ + + + G Sbjct: 449 DQDILMTQGAGNIG 462 >gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis 053442] Length = 451 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 91 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 142 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 143 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 200 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 201 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 256 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 257 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 313 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 314 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 369 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 370 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 429 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 430 LNMGAGSIN--RVPAALLE 446 >gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 490 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 155/405 (38%), Gaps = 47/405 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G + D+ + P F A+ G G + A+ +GA V+V+ D V + V V Sbjct: 27 GTAFDADRVTPGSLFIAVPGHVEGGPGAVAPALARGAAAVMVDADCVLPAAARDACVVRV 86 Query: 89 DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSY 143 D A V AR + ++AITG+ GKT+ M+ L + T A IG+ Sbjct: 87 ADTRTA--AALVTARYFGEPGRQMDVVAITGTNGKTSVSYMVESVLRISEGTRAGVIGTA 144 Query: 144 NNHIG-----VPLTLARMPVDVDFGIFELGMSHLG---------EIRFLTHLVRP---HI 186 + IG +P ++ P D M G + LTH V + Sbjct: 145 GSRIGDEPIPMPPSVLTTPETPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDV 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T ++ HL + +E AK +F+GL + + N DD + A A+ Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCRHAVV--NVDDP----VGAGIQAMMPGA 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ AD++ + S + +G+ G N L T+ +L Sbjct: 259 VTTYALDAEADYRATDLVVDAAGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVL 318 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D+ + AL GR +R A G ++D Y +P S+ VL + Sbjct: 319 GHDLTGLVAALERMPQIPGRFERLTTA--AGTSVIVD--YAHSPDSLN---KVLGTVRGF 371 Query: 367 GEGRRIAVLG--------DMCEMGELSQSFHIDLAEVLSLYNISH 403 GR + V G EMG ++ + H DL VL+ N H Sbjct: 372 ARGRVVTVFGCGGDRDTTKRAEMGTIAGT-HSDLC-VLTSDNPRH 414 >gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] Length = 490 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp. Y4.1MC1] gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp. Y4.1MC1] Length = 451 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 26/220 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 S+A I ITGS GKTTT ++ L +K G +IGV +A+ ++ + Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGVAACEVAQKAEANNWLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L IR RPHI+V+ I AHL E A AKA IF+ Sbjct: 166 TELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280 +N DD +++ ++ K I+S K ++ ++ W + + ++ L GK Sbjct: 222 VNADDEL--VMRLAENSCAQKVIFSATKKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGK- 278 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 H +N+L + + + D K L+ F Sbjct: 279 ----------HNLENILAAVAVAKLTGVDNKAIAKVLTTF 308 >gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans NN2025] gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans NN2025] Length = 451 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DV 160 A L S+A II ITGS GKTTT M+ L+ ++ G +IG P + PV + Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSG----NIGFPASEVAQPVTEK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PH+AVIT + P H+ E AK I + + + Sbjct: 162 DILVMELSSFQL----MGTESFHPHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTEK 217 Query: 221 GTIFLNYDDSFFELLKAKSH 240 + LN++ + L ++ Sbjct: 218 DFLVLNFNQDLAKDLANQTQ 237 >gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae bv. albensis VL426] gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae bv. albensis VL426] Length = 467 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F L + Q E + + E+ +G Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAEL--SLVG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ + A+ AL K G +RC A N G +++S Sbjct: 297 RHNVANVLTVLALLDSAEVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA VL+ + L Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 446 >gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 499 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA +V D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] Length = 487 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/382 (22%), Positives = 155/382 (40%), Gaps = 56/382 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I AV +GA V + A + + S + Sbjct: 17 LIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAAVAFEAEGAAPMHAESAVL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + G L+ A+A R + + +I +TG+ GKT+ ++L AL + + +G Sbjct: 77 VPVKGLAGQLS--AIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTH 180 + + +GV TLA + V ++ L + + F Sbjct: 135 TLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +AV T ++ HL +E +AKA++F +N DD+F L ++H Sbjct: 192 ----DVAVFTNLSRDHLDYHGSMEAYGAAKAKLF-AWPNLRCRVINLDDAFGRELAQQAH 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI------GYHMAQ 294 + + S + F CSE + + ++ + + G+ G Sbjct: 247 D---SRLIGYSLSDASAFLY-----CSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLS 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L +G + + +D +K L GR +R L G L+ Y P +++ Sbjct: 299 NLLAVVGALLGMDYGLDEILKVLPQLQGPAGRMQR----LGGGDKPLVVVDYAHTPDALE 354 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 VL + PH +GR + + G Sbjct: 355 ---KVLEAMRPHVQGRLVCLFG 373 >gi|228923443|ref|ZP_04086729.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836228|gb|EEM81583.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 436 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 67/371 (18%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGA 65 HD+ +QG + F +++ RSI+ P F + V++G Sbjct: 22 HDMKHTVQGSD---YEKRFFTQTALEKRSISILP----------------FDKNNVEEGQ 62 Query: 66 GLVVVNT-----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ N + + + L+IPV LG L ++ T +A+TG+ GKT Sbjct: 63 VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FL 178 +T +L + T IG H GV + + +FE E R FL Sbjct: 114 STTGLLAHVMQGAHPTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFL 159 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P A++T I H F+ I ++ SA E+ L+ I DD + ++AK Sbjct: 160 SY--NPDYAIMTNIDFDHPDYFADINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAK 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNML 297 + Y FG ++ DFQ R ++ ++ + +V ++ + G G H N L Sbjct: 216 VPVI----FYGFG--EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNAL 269 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + DV+ L+ F EG +R+ G +ID+ Y +P + A I Sbjct: 270 AVIALCHYENVDVEAVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATI 324 Query: 358 SVLSQISPHGE 368 Q P E Sbjct: 325 EAARQKHPERE 335 >gi|149193790|ref|ZP_01870888.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus TB-2] gi|149135743|gb|EDM24221.1| UDP-N-acetylmuramate--L-alanine ligase [Caminibacter mediatlanticus TB-2] Length = 436 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 34/249 (13%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I++ G+ GK+TT T LSSI + +C IG+ + + AR VD D +FE Sbjct: 104 VISVCGAHGKSTT----TAILSSILQNASCLIGAESKEFK---SNARY-VDSDLMVFEAD 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + F+ P+IAV+T P H+ ++ ++ + E F L+K +N D Sbjct: 156 ES---DGSFVDS--NPYIAVVTNTEPEHMEFYNHDLDLFYSHYEEF--LKKAKIRVVNGD 208 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D F + L + +K +Y +KN F++R + +G EV +G Sbjct: 209 DEFIKKLN-----IPMKKVY-LKDAKNIRFEIR-----DNNPKTIFEYKGYEFEV--YGF 255 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H+A + L+ + D + K + + +G KR+ N+ F LID+ Y Sbjct: 256 GEHLALDALLAIEAAKEFL-DYNEISKNIKNY---KGIKKRFDILQNESSFVLIDD-YGH 310 Query: 349 NPASMKAAI 357 +P +KA + Sbjct: 311 HPTEIKATL 319 >gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] Length = 501 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 49/95 (51%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S DSR I P + F AI G H DG FI AV +GA V++ + + + Sbjct: 33 VFGLSADSRRINPGDLFVAIPGTHADGSRFIADAVARGASAVLMEPAAPRPVLPPHVALA 92 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 DV +L+ A R ATI A+TG+ GKT+ Sbjct: 93 FSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKTS 127 >gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 452 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ K+ G + +IG P + +A+ D Sbjct: 107 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGKS----GLLSGNIGFPASEVAQTATDK 162 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAVIT + P H+ EE +AK I + + Sbjct: 163 DILVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFEEYVAAKWNIQKNMTAD 218 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN++ + L K+ A Sbjct: 219 DFVVLNFNQDLAKELAQKTVA 239 >gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum centenum SW] gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodospirillum centenum SW] Length = 491 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 145/367 (39%), Gaps = 27/367 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR I P F A+ G +DG DFI AV GA V+ V G + + Sbjct: 27 ITALTADSRKIVPGTLFAALPGTRHDGRDFIAQAVAAGASAVLAPKGTVLPPGCEHVAL- 85 Query: 87 GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 ++D+ +AA I A+TG+ GKT+T + S + +G+ Sbjct: 86 -IEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNGKTSTAQFTRQIWSGLGHRSGAMGTLG 144 Query: 144 ---NNHIGVPLTLARMPVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIAVIT 190 + + PV++ + EL G++HL G +F V A T Sbjct: 145 LVADGFPNIETLTTPDPVELHRLLAELARGGVTHLAMEASSHGLDQFRLDGVLVTCAGFT 204 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYS 249 + HL +E AKA +FE + G + LN D FE L A + +T+ Sbjct: 205 NLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVAVLNADTPQFEALAALCRSRK-QTVIG 263 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G+ + + L + +E+++ G + +G N L LG+V D Sbjct: 264 YGE-RGRELALHSARPLPHGQQVEIEVFGTRHSLELPLVGNFQLWNALCALGLVIGSGED 322 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A L+ GR L G +D Y P ++ +VL + PH G Sbjct: 323 PAAATAQLARLEGVRGR-LDLVARLKNGAAVYVD--YAHTPDGLE---TVLKALRPHTVG 376 Query: 370 RRIAVLG 376 R +AV G Sbjct: 377 RLVAVFG 383 >gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia floridanus] gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia floridanus] Length = 480 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 98/409 (23%), Positives = 175/409 (42%), Gaps = 55/409 (13%) Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-- 127 +N V L IPV ++++ + + L IAI G+ GKTTT MLT Sbjct: 91 INNPEVQQAKRLKIPV---------IHRVKILSELMRYKYGIAIAGTHGKTTTVSMLTNI 141 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + + T+ G + GV AR+ DF I E S +R P +A Sbjct: 142 YVEAGLDPTFVNGGIIRSQ-GVS---ARLGYGNDF-IAESDESDKSFLRLC-----PVVA 191 Query: 188 VITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I H++ + E + + + L G + DD + + + + Sbjct: 192 VITNIDTDHMNTYHQNFEYLQEVFIKFLDKLPMYGYAVVCIDDPVVRKILPRIN----RK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I ++G SK+A + K+ Q E+S + ++ K ++VV + GYH A N ++ V+I Sbjct: 248 IITYGFSKDATLCIVKYYQYREKSNFTILIKNNKELQVVLNTPGYHNALNAAASIA-VAI 306 Query: 306 LTADVDTAI-KALSVFHPKEGRGKRYRCALNQ---------GFFTLIDESYNANPASMKA 355 DT I K++S F G +R+ N G +ID+ Y +PA +++ Sbjct: 307 EEGIRDTVILKSMSNF---TGTNRRFEFLGNYPLNIINGRVGKVMVIDD-YGHHPAELRS 362 Query: 356 A-ISVLSQISPHGEGRRIAVLG--DMCEMGELSQSF-----HIDLAEVLSLYNISHVWLS 407 I++ + S H R + V EL +F +D+ +L +Y+ + Sbjct: 363 TIIAIRTGWSDH---RLVMVFQPHRFTRTHELYDNFVRVLSTVDVLLMLDIYSAGEQPIM 419 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNS 454 G + +L D++ + V + FL F+ + L D D+++++ + + Sbjct: 420 GINAQSLCDSILKYAKVQPIFVQNECFLLKFLMNLLRDKDLLLIQGAGT 468 >gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 492 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G + D+R + P + FFAI G G + AV GA V+ +TD A + +PV Sbjct: 28 ITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDTDG-ADFVTADVPVI 86 Query: 87 GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + DV + +A A K T A+TG+ GKTTT M+ L+++ +T IG+ Sbjct: 87 ILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHILNTLGETTGLIGT 144 >gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis FAM18] gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis 053442] gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis G2136] gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M01-240149] Length = 468 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 386 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 387 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 446 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 447 LNMGAGSIN--RVPAALLE 463 >gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70] Length = 482 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 98/437 (22%), Positives = 171/437 (39%), Gaps = 86/437 (19%) Query: 59 HAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------ 110 HA + GA +VVV++ + A V+ V ++ V R + A I Sbjct: 76 HAAENIDGASVVVVSSAIRAD---------NVEVVAAQERRIPVIQRAQMLAEIMRFRHG 126 Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IA+ G+ GKTTT M+++ A + + T+ G N H+G L + D Sbjct: 127 IAVAGTHGKTTTTAMISMIYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 186 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P ++V+T I P H+ + G EE+ L G Sbjct: 187 FLHL---------------QPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNLPFYGL 231 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 L DD L K +G + + ++G S+ AD+++ ++Q Q + + G+ + Sbjct: 232 AVLCADDDVLTELTPK---VG-RQVITYGFSEKADYRIEDYQQTGFQGHYTVITPSGERI 287 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336 +V+ + G H A N L + + + AL+ F +G G+R+ L Q Sbjct: 288 DVLLNVPGRHNALNATAALVVAKEEGIGNEAILAALADF---QGAGRRFD-QLGQFIRPN 343 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386 G L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 344 GKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIAMIFQPHRYSRTRDLFDDFVQV--LSQ 400 Query: 387 SFHIDLAEVLSLYNISHVWLSG---------FHVLALKDALPRSIHVHYSETMDGLFLFI 437 +D+ +L +Y ++G L D + S H E +D + Sbjct: 401 ---VDVLIMLDVYAAGETPIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQV---- 453 Query: 438 QSSLVDGDVVVVKSSNS 454 L DGD+++ + + + Sbjct: 454 ---LQDGDLILAQGAGN 467 >gi|89100115|ref|ZP_01172984.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911] gi|89085205|gb|EAR64337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911] Length = 431 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 77/329 (23%), Positives = 130/329 (39%), Gaps = 47/329 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K T +A+TG+ GKT+T +L + K T IG R D ++ +F Sbjct: 99 KKFTSVAVTGAHGKTSTTGLLAHVMKGAKPTSFLIGD---------GTGRGDADAEYFVF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F+ I+++ SA E+ + K I Sbjct: 150 E-----ACEYRRHFLSYF--PDYAIMTNIDFDHPDYFANIDDVFSAFQEMSWQVNK--GI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 F DD + ++AK L Y FG+ DFQ R + +E + +V ++ + Sbjct: 201 FACGDDEQLQKIQAKVPVL----FYGFGEEN--DFQARNVIKSTEGTTFDVFVRNTFYDT 254 Query: 284 VH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G H N L + + D + L F G + R + + +I Sbjct: 255 FSIPQFGDHNVLNSLAVIALCHYEEIDSEIVKDLLLTF-----EGVKRRFSEKKVASQVI 309 Query: 343 DESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + Y +P ++A + Q PH R L D E L+++ + L Sbjct: 310 IDDYAHHPTEIRATVEAARQKYPEKEIVAVFQPHTFTRTQTFLDDFAE--SLNKADKVYL 367 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ +H L+ + L+D +P S Sbjct: 368 CDIFGSARENHGKLT---ITDLQDRIPSS 393 >gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] Length = 496 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 15/218 (6%) Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 +G+ E+ L + R +AV T + HL +E+ +AKA++F G Sbjct: 180 YGVMEVSSHALAQRR--VQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKS 280 +N DD + + L +L + ++S+ S +A+F R C E + + L Sbjct: 238 KAIINLDDPYGKRL---IDSLSREKVWSYSVSDSSANFYTRDL--CYEANGVSGILHTPI 292 Query: 281 MEVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 EV + +G + N+L +G V L D+ ++ L +F GR +R + Q Sbjct: 293 GEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDI 352 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y P S++ ++L P EGR I V G Sbjct: 353 SVIVD--YAHTPDSLE---NLLKAARPFIEGRMICVFG 385 >gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC 23970] gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC 23970] Length = 469 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCV 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDAADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758] gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758] Length = 470 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 41/329 (12%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IALSSIKKTYACI 140 ++P+ ++LG L + + T +AI+G+ GKTTT ML+ IAL++ Sbjct: 104 NLPMLSRAELLGQL--------MTNYKTPVAISGTHGKTTTTSMLSHIALAA-------- 147 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 + + I V L + ++ G +L ++ E P I +I + HL F Sbjct: 148 -NLDPTISVGGILKAIEGNIRVGGPDLFITEACEYTNSFLHFSPKIGIILNVDADHLDFF 206 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +++I ++ + L + GT+ +N D E + + L + I +FGK + D+ Sbjct: 207 KDLDDIRNSFHLFAKLLPENGTLVINGDIDKIEEITSD---LSCRVI-TFGKEASLDYSA 262 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +EQ + V H + G H N L + + IL +T L Sbjct: 263 ANITY-NEQGNASFDVVKDGQNVAHLALAVGGEHNVYNALAAIAVADILGVPAETIQTGL 321 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGE 368 + FH G +R+ G T+ID+ Y +P + A + + PH Sbjct: 322 ASFH---GTDRRFEYKGEVGGVTIIDD-YAHHPTEIAATLKSAAHYPHKKLWCIFQPHTY 377 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 R A+ + E L+ + H+ LA++ + Sbjct: 378 TRTKALFSEFAEA--LAHADHVILADIYA 404 >gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 451 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 26/220 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 S+A I ITGS GKTTT ++ L +K G +IGV +A+ ++ + Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGVAACEVAQKAEANNWLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L IR RPHI+V+ I AHL E A AKA IF+ Sbjct: 166 TELSSFQLAGIRDF----RPHISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280 +N DD +++ ++ K I+S K ++ ++ W + + ++ L GK Sbjct: 222 VNADDEL--VMRLAENSCAQKVIFSATKKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGK- 278 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 H +N+L + + + D K L+ F Sbjct: 279 ----------HNLENILAAVAVAKLTGVDNKAIAKVLTTF 308 >gi|125625078|ref|YP_001033561.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|166224698|sp|A2RNJ0|MURC_LACLM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|124493886|emb|CAL98880.1| UDP-N-acetyl muramate-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300071883|gb|ADJ61283.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 443 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + G+ GKT+T ML +S+I T IG R ++ +FE Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGNAGSEYFVFE-- 152 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++T I H F GIE++ SA + ++K IF + Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D L AK+ IY +G N D++ + + S + +G+ + V Sbjct: 208 DVNLRKLSAKA------PIYYYGFEANDDYRAENLIRSTRGSSFDAYFRGEKIGHFVVPA 261 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L D+ L F RG + R + T+I + + Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTDVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381 +P ++A + Q PH R IA + E+ Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360 >gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa C102] gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa C102] Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADVVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E S ++ LQG Sbjct: 252 ETGRLKQGNEDLISTQDIPLQG 273 >gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio fructosovorans JJ] gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio fructosovorans JJ] Length = 441 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 30/202 (14%) Query: 44 FAIKGPHYDGHDFILHAVQKGAGLVV--------VNTDMVASIGSLSIPVFGVDDVLGA- 94 F K P DF AV+ G L V DMV + S I G+ D L A Sbjct: 40 FLEKNPKSVADDFRAEAVEAGYDLRVGAHGPADFAGADMV--VLSPGIRAAGLADCLAAC 97 Query: 95 -----LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L++L +A+ ++ I+A+TGS GKTTT +++ L + + G +IG Sbjct: 98 PGAQVLSELELASWFVTE-PIVAVTGSNGKTTTVMLVSHLLEAAGRKVFTGG----NIGT 152 Query: 150 PLT---LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 PL+ LA P DV + E+ L L RP +AV+ +P HL + +EE Sbjct: 153 PLSEYVLAGDPADVV--VLEVSSFQLQ----LVKSFRPKVAVLLNFSPNHLDWHADLEEY 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYD 228 SAK IF T L D Sbjct: 207 LSAKLNIFAAQRPGDTAILPRD 228 >gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] Length = 488 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 54/381 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 V ++ DSR + P F A+ G DG F A GA +V D+ ++ LS Sbjct: 23 VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVAMVAEGPRPADLPQAVAYLS 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P D AL A AT++A+TG+ GK++ + + L+ + + A +G+ Sbjct: 83 VP-----DARRALALAAARLHPGQPATVVAVTGTSGKSSVADFVRQILARLGRRSASLGT 137 Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184 + + + TL R+ D GI +L M SH E R L VR Sbjct: 138 LGVVTGEGAAYGALTTPDPVTLHETLDRLARD---GITDLAMEASSHGIEQRRLDG-VRL 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYD----DSFFELLKAKS 239 A T + HL +E +AK +FE L G T +N D D ++A+S Sbjct: 194 TAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNADGPMADRAVAAIRARS 253 Query: 240 HALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 L + T G++ D + R + Q + + QG+++ V +G + +N L+ Sbjct: 254 --LPLVTTGRAGETLRLDAVETRGFAQ-----RLTLAAQGRALTVDLPLVGSYQVENALV 306 Query: 299 TLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +V A ++ I AL H G+ R A ++G ++D Y P ++ Sbjct: 307 AAALVLATPAGRGRLEAVIGALG--HLAGVPGRLERVATHRGALCVVD--YAHKPEALA- 361 Query: 356 AISVLSQISPHGEGRRIAVLG 376 VL + P GR + V+G Sbjct: 362 --GVLQALRPFATGRLVCVMG 380 >gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-66c26] gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CIP 107932] gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-76w55] gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-97b34] gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-37x79] gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CD196] gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile R20291] gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-32g58] gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile CD196] gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile R20291] Length = 484 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 45/269 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N + +SR + F IKG DGH +I A++KGA +V D V G I Sbjct: 23 INNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEED-VEIKGCTFIK-- 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V D + K+A K +I +TG+ GKT+ +L L+ K IG+ Sbjct: 80 -VKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSITTILNEILTLNKNKVGLIGTIK 138 Query: 143 -----------------------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 +NN + M V L ++ + E F Sbjct: 139 IFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAMEV----SSHSLALNRVDETDF-- 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + T + P HL +E+ AK ++F + T +N DD + + Sbjct: 193 -----KLGIFTNLTPDHLDFHKDLEDYRKAKEKLF--FKTTMANIINIDDEGGKKIYENI 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE 268 + + Y++G ADF R K S+ Sbjct: 246 KGINV-PCYTYGVDTKADFMARDIKSDSD 273 >gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] Length = 428 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 28/225 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGS 80 V+ + +DSR+I ++F AI G DG FI AVQ GA V+ D V IG Sbjct: 32 VSNLELDSRAIQQGDSFVAIIGHTVDGRLFIERAVQAGATSVLAQADSEHKHGEVTYIGE 91 Query: 81 LS-IPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + I ++ +D +L +AARL + + +I +TG+ GKTT +++ + + A Sbjct: 92 VPIIHLYQLDTLLS-----VIAARLYQYQQQVIGVTGTNGKTTITQLIAQWIGLLGDKAA 146 Query: 139 CIGSYNNHIGVPLTLAR----MPVDVDFGIFELGM--SHLGEIRFLTH-LVRPHIAVI-- 189 +G+ N L A+ +DV + +L +H + +H LV+ +A + Sbjct: 147 IMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQGAHYTAMEVSSHGLVQGRVAAVPF 206 Query: 190 -----TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 T ++ HL +E +AK +F G + LN DD Sbjct: 207 KLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGHHCEHAV-LNIDD 250 >gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640] gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06] Length = 469 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 146/361 (40%), Gaps = 44/361 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 V 448 + Sbjct: 448 L 448 >gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 511 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 42/393 (10%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT- 72 +GI+P +N IS +S+ + F + G + DG F + A++ GA ++ + Sbjct: 13 VGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72 Query: 73 --DMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLT 127 + +ASI I V ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKERIASIDRERILV--IEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTITFLLE 130 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------DFGIFELGMSH 171 L + K A G+ N +A D +F I E+ Sbjct: 131 YLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILEVSSHS 190 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYD 228 + + R A+ T HL S +E K ++F EK G LN+D Sbjct: 191 IAQKRISG--CEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVLNHD 248 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVH 285 D + L + + + + T + + +N DF K+ +E S + +++ Sbjct: 249 DHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQLFV 308 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL--ID 343 +G N + + I+ L + K + F GR ++ + N +L I Sbjct: 309 PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRSLPTII 368 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +K VL I EG+ I V G Sbjct: 369 VDYAHTPDGLK---KVLQSIKKLCEGKLITVFG 398 >gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18] gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis alpha153] gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria meningitidis 8013] gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107] gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M13399] gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis ES14902] gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis 961-5945] gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis NZ-05/33] Length = 469 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ LLE Sbjct: 448 LNMGAGSIN--RVPAALLE 464 >gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate ligase [Streptomyces venezuelae ATCC 10712] Length = 565 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 29/255 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GI+ DSR++ P + + A+ G G DF+ A GA ++ + + +PV Sbjct: 76 ISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAAAILTDPTGAERAAATGLPVL 135 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V++ G + +LA R A + I ITG+ GKTTT ++ L +G+ Sbjct: 136 VVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAYLVEGGLRGTGHHTGLVGTVE 195 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SH---LGEIRFLTHLVRPHI 186 IG + P D G+ + M SH LG + + Sbjct: 196 MRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVSSHALVLGRVDGCVF----DV 251 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV ++P H+ S +E+ AKA +F E++ +N DD++ L ++ Sbjct: 252 AVFNNLSPEHMEFHSDMEDYFQAKAGLFT-PERSRLGVVNLDDAYGRRLVGEATV----P 306 Query: 247 IYSFGKSKNADFQLR 261 + +F AD R Sbjct: 307 VLTFSAEGRADADWR 321 >gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21] gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21] Length = 461 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 137/363 (37%), Gaps = 58/363 (15%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT M+ LS I T IG N +G L + G F + Sbjct: 108 IAVAGTHGKTTTTSMVATILSKGGIDPTI-VIGGRLNSLGTNARLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL L+ P IAV+T I HL +SGIEEI E + G L D Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLD 217 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + K S+G S ADF+ +V+L G S V H Sbjct: 218 NGNVADVLPRVK----KRFTSYGLSAQADFR-----------ATDVRLSGFSTSFVAHHK 262 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE----------GRGKRYRCALNQGF 338 G + + G ++L A A+ A+ + P E G G+R+ Sbjct: 263 GVRLGEITFSMPGAHNVLNALAAIAV-AMELDIPFETIQEGFAGFGGVGRRFHLKGEANG 321 Query: 339 FTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSF 388 ++D+ Y +P +KA + PH R + D ++F Sbjct: 322 IMVVDD-YGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFV------KAF 374 Query: 389 H-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGD 445 H D+ + +Y + G AL + + R V + D L ++ L GD Sbjct: 375 HDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAPGD 434 Query: 446 VVV 448 +++ Sbjct: 435 ILL 437 >gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 499 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 28/274 (10%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+ G+ GKT+T M+ AL I + IG +G T AR+ F + E Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P + VIT I P HL ++ A + L K G + L D Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSAAAFEQAFVDFTGRLRKGGALVLCAD 235 Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281 D+ E + A+ A G + I Y FG D QL + + + +V + Sbjct: 236 DAGVKRLAEQVSARGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295 Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 +V H + G HM N LG +L D+ I AL F G +R + + Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + D+ Y +P + A + ++ G+GR Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383 >gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1] Length = 459 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M++ L + + + I V L+ + ++ G E +S Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 E RP ++I I HL F I +I + E G +N + Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225 Query: 231 FFELLKAKSHALGI-KTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285 +E + A G+ + I ++G DF K C+ + M QG + V Sbjct: 226 RYEEIVA-----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + G H N L + + + L D ++ + L F G +R++ T+ID+ Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDTESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334 Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P ++A ++ + PH R A L D ++ LS + + LA++ Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391 Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +S +L L L + ++ HY + + + F+ + V+GD+++ Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443 >gi|239828070|ref|YP_002950694.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. WCH70] gi|259509774|sp|C5D6B2|MURC_GEOSW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|239808363|gb|ACS25428.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. WCH70] Length = 433 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/334 (26%), Positives = 137/334 (41%), Gaps = 55/334 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L +PV LG K T IA+TGS GKT+T +L + + T Sbjct: 82 ELGVPVIRYHRFLG---------EFLQKFTSIAVTGSHGKTSTTGLLAHVMQGVHPTSYL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG + G + ++ + +FE E R FL++ P A++T I H Sbjct: 133 IG---DGTGKGIEGSK------YFVFE-----ACEYRRHFLSYF--PDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F+ I+++ SA E+ L+ I DD + + ++AK L Y FG + D Sbjct: 177 DYFANIDDVFSAFQEM--ALQVKKGIIACGDDEYLQKIQAKVPVL----FYGFG--DDND 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 FQ R + +E + +V ++ S E+ H G H N L + + DV Sbjct: 229 FQARNVVKTTEGTAFDVFVRNTFFASFEIPH--FGDHNVLNALAVIALCHYEEMDVRIIQ 286 Query: 315 KALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L F +G +R+ + NQ LID+ Y +P + A I Q P GR I Sbjct: 287 ERLKTF---QGVKRRFSEKVLGNQ---ILIDD-YAHHPREIIATIDAARQKYP---GREI 336 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +Q+F + AE SL V+L Sbjct: 337 VAIFQPHTYTR-TQTFLREFAE--SLQQADQVYL 367 >gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus haemolyticus JCSC1435] gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus haemolyticus JCSC1435] Length = 449 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIAITG+ GKTTT ++ + K G + +IG V +A+ ++ Sbjct: 107 LISEAPIIAITGTNGKTTTSSLI----GDMFKKSRLTGRLSGNIGYVASKVAQETSPNEY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L RPHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LITELSSFQL----LGVEQYRPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTENDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRHLIESENLKAKT 238 >gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1] gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1] Length = 488 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 53/371 (14%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI G+ GKTTT ++ ++ + + IG N G T AR+ + + Sbjct: 123 VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGGLLNSAG---TNARLGTSR----YLIAE 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P ++V+T I H+ + G E++ S + L G + D Sbjct: 176 ADESDASFL-HL-QPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCID 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287 D + + + I ++G +AD Q + Q Q V+ +GK ++++ + Sbjct: 234 DPVVREIMPRIS----RHIVTYGFRDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLID 343 G H N L + + + D I+AL+ F +G G+R+ + A +G L+D Sbjct: 290 PGQHNVLNALAAIAVATEDEIDDSAIIQALAEF---QGIGRRFQHLGKFATPKGEVMLVD 346 Query: 344 ESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I ++ PH R + D E+ LSQ +D Sbjct: 347 D-YGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEV--LSQ---VDCL 400 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGD 445 +L +Y+ + G A AL RSI + +D +F+ + L +GD Sbjct: 401 LLLDVYSAGEAPIPG----ADGRALCRSIRLRGQ--LDPIFIASPEQLAEVLPDVLQEGD 454 Query: 446 VVVVKSSNSCG 456 +++ + + + G Sbjct: 455 LLLTQGAGNIG 465 >gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 499 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 28/274 (10%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+ G+ GKT+T M+ +L I + IG +G T AR+ F + E Sbjct: 125 LVAVAGAHGKTSTSSMMAHSLLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P + VIT I P HL ++ A L K G + L D Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSAAAFEQAFVNFTGRLRKGGALVLCAD 235 Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281 D+ E + A+ A G + I Y FG D QL + + + +V + Sbjct: 236 DAGVKRLAEQVSARGDADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295 Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 +V H + G HM N LG +L AD+ I AL F G +R + + Sbjct: 296 QVFHGQLNLRIGGKHMLLNAGGALGAAYVLGADLSQFIAALRTF---SGADRRMQPVGER 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + D+ Y +P + A + ++ G+GR Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383 >gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] Length = 491 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 139/370 (37%), Gaps = 30/370 (8%) Query: 26 FVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 +V G + DSR + P +AF A G DG F+ A+ GA +V D V + G Sbjct: 19 WVTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDAR 78 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V + D+ +A A + ++A TG+ GKT+T AL+ + + +G+ Sbjct: 79 VATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGVMGT 138 Query: 143 YN-------NHIGV----PLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 G+ P+TL R VD F L S +G + +A+ Sbjct: 139 LGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEIDVAL 198 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T HL + AK +F GL+ +N DD L A+ AL Sbjct: 199 FTNFTRDHLDYHGTMAAYWEAKRRLFAWPGLKAA---VINVDDEQGARLAAEPLAL---D 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++++ + A R + + ++EV IG + N+L LG + L Sbjct: 253 VWTYAVNGAARLVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A + P GR +R G + Y P +++ + L ++ Sbjct: 313 GVALADAAAVVPALTPVPGRMQRV-----PGEHVEVVVDYAHTPDALEKVLQALRPLAAA 367 Query: 367 GEGRRIAVLG 376 GR V G Sbjct: 368 RGGRLWCVFG 377 >gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM 11079-80] gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM 11079-80] Length = 467 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 106/434 (24%), Positives = 182/434 (41%), Gaps = 59/434 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL-VVVNTDMVASIGSLSIPVFGVDD 90 ID+R P G D +LH + G L ++N D+V + +++ + Sbjct: 65 IDTREAPP--------GQEQLSSDVVLH--RSGWNLEWLLNADLVVTNPGIALATPEIQQ 114 Query: 91 VLGALNKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VL A + L + +IAITGS GK+T + L+ L++ A +G +I Sbjct: 115 VLAAGIPVVGDIELFAWHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNI 170 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVP L + DV+ + EL L T ++ A ++ H+ + G+E+ Sbjct: 171 GVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYR 225 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK IF+ E T +N DD+ HA ++ + +FG + A F L + Q Sbjct: 226 QAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGR 276 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + + E+ +G H N+L L ++ + A+ AL K G Sbjct: 277 EYLFARDEAVMACAEL--SLVGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTG 329 Query: 328 KRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 +RC A N G +++S N AS AA+S L EG+ ++G + + + Sbjct: 330 LTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADF 383 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + LA VL+ + L F V +P + ++M+ + I+ L G Sbjct: 384 TP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSG 434 Query: 445 DVVVVKSSNSCGFY 458 D+V++ S +C + Sbjct: 435 DMVLL--SPACASF 446 >gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] Length = 489 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 140/360 (38%), Gaps = 41/360 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + +DSR +AP FF +KG DGHDF AV + A +V + S+ +PV V Sbjct: 26 LEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARKAAAIVAERPL-----SVDVPVVLVS 80 Query: 90 DVLGALNKLAVA--ARLRSKATII------------AITGSVGKTTTKEMLTIALSSIK- 134 D A+ LA A R + +I +I + + K+ I IK Sbjct: 81 DSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKV 140 Query: 135 --KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++Y + + + T +M VD V+F E+ L + R H +AV T Sbjct: 141 GDRSYPAANTTPESLILQRTFKQM-VDEGVEFVAMEVSSHALHQGR--VHGCDYDVAVFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSHALGI 244 + HL +EE +AK +F L + LN+DD + K + A Sbjct: 198 NLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVSQYYKHMTAA--- 254 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I ++G + +D + + + + S V +G N+L Sbjct: 255 -PIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETKLVGSFNVYNILAAAAACL 313 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T AL+ P GR + Q F ++D Y P S++ A+ + Q++ Sbjct: 314 ASGFSLETIAAALADVEPVPGRFE--TVDEGQNFTIIVD--YAHTPDSLENALKTVRQLA 369 >gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 149/375 (39%), Gaps = 40/375 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASI 78 + G+++DSR + F A+ G G +FI A++ GA ++ + ++ AS Sbjct: 23 ITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTDARGAEIAADELAASD 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT----------TTKEMLTI 128 +L + +D AL A TI+A+TG+ GKT T ++ + Sbjct: 83 AALIV----TEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVRQIWTELDLAAV 138 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFL--THLV 182 L + A + P+TL R + + G+ M SH E R L HL Sbjct: 139 NLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGLEQRRLDGVHLT 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241 A + HL E +AKA +F+ L + G +N D ++ + A Sbjct: 199 ---AAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGAEMRRIAEA 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + I + G + AD L + + + +GK + + IG A+N+L+ G Sbjct: 256 RG-QNILTVGP-EGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAENVLLACG 313 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +V D D L GR + + G +D ++ + A + L Sbjct: 314 LVIAAGEDPDRVFDTLPHLTTVRGR-MQLAATRSNGAAVFVDYAHTPD-----AVATALK 367 Query: 362 QISPHGEGRRIAVLG 376 + PH GR IA++G Sbjct: 368 AMRPHVMGRLIAIVG 382 >gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris vibrioformis DSM 265] gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium phaeovibrioides DSM 265] Length = 465 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 16/134 (11%) Query: 107 KATIIAITGSVGKTTTKEM---LTIALSSIKKTYAC-IGSYNNHIGVPLT--LARMPVDV 160 +A I+ ITG+ GKTTT + + A S++ A +G +IGVP + + M + Sbjct: 107 RARIVGITGTDGKTTTATLVHDIAAAEGSLRGNRAWGVG----NIGVPFSAMVGEME-EG 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 D + EL L R +T RP ++V+T I P HL + G +E A+AK I ++ Sbjct: 162 DTAVVELSSYQL--ERCVTF--RPDVSVLTNITPDHLGRYDGSMERYAAAKFRICMNQKE 217 Query: 220 TGTIFLNYDDSFFE 233 T+ N DDS E Sbjct: 218 GDTLIYNADDSLLE 231 >gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira defluvii] gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira defluvii] Length = 460 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 100/430 (23%), Positives = 166/430 (38%), Gaps = 65/430 (15%) Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + + N ++VA+ + IPV ++L L +L +AI G+ GKTTT Sbjct: 72 SAVAATNPEVVAA-KARQIPVIPRAEMLAELMRLKFG---------VAIAGAHGKTTTTS 121 Query: 125 MLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 M+ +A + T IG N +G L R D I E S +R Sbjct: 122 MVANVLAQGGLDPTM-VIGGKVNALGSHARLGRG----DLLIAEADESDGSFLRLA---- 172 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IA +T I HL ++ +E++ + E + G L DD L + Sbjct: 173 -PTIAAVTNIDREHLDHYGSMEKLNDSFLEFVNKVPFYGLAVLCSDDERLRNLLPRV--- 228 Query: 243 GIKTIYSFG---------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292 +K ++G + D LR+W S V +G+++ I G H Sbjct: 229 -VKRYQTYGLHEHPGHVPDFRATDISLRQWG-----SEFRVFFRGRNLGPFRLSIPGIHN 282 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L+ + I L VD K L+ F G +R+ + ++D+ Y +P Sbjct: 283 VSNSLVAIAIGMELDIPVDLIRKGLAAF---SGVERRFHLRGEKAGIMVVDD-YGHHPTE 338 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFHIDLAEVL---SLYNIS 402 ++A I+ Q G RR+ VL M E + +F D A+ L +Y Sbjct: 339 VRATIAAAKQ----GWDRRVVVLFQPHRYSRSRDLMQEFAHAF--DQADALFMTEIYAAG 392 Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + G L +A+ + H + E D + + +L GD+V+ + ++ Sbjct: 393 EQPIPGVSGAKLVEAVQAAGHPSATFVERKDTMAEQVLPTLKSGDLVITLGAGD--IWKT 450 Query: 461 INLLLEEFPA 470 +LE PA Sbjct: 451 GLAILERLPA 460 >gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus capsulatus str. Bath] gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus capsulatus str. Bath] Length = 459 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 35/201 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V G L+ A R A ++AITG+ GK+T ++ + + K + ++G P Sbjct: 111 VFGDLDLFACCVR----APVVAITGANGKSTVTTLVGL----MAKAAGVNAAVGGNLGTP 162 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + L + + + EL L + L +A + I+P H+ + + A AK Sbjct: 163 M-LDLLDAAAELYVLELSSFQLER----SELFEADVATVLNISPDHMDRYPDLASYAEAK 217 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQ 269 +F G G + LN DD L A + G + + + G D+ L +W+ + Sbjct: 218 RRVFRG---EGLMVLNQDDP----LVAAMYRPGRRAVRFGLGSGDELDYSLARWEG---R 267 Query: 270 SWM-----------EVQLQGK 279 +W+ EV+++G+ Sbjct: 268 AWLLAKGVPLLPADEVRIKGR 288 >gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] Length = 491 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 23/227 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q F++ +++DSR+I + F A+ G DG FI A+ +GA V+V+TD G + + Sbjct: 17 QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIV 75 Query: 84 PVFGVDDVLGALNK-LAVAARLRSKAT------IIAITGSVGKTTTKEMLTIALSSIKKT 136 GV L K ++ A +R I+ ITG+ GKT+T ++ ++ + Sbjct: 76 AEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGK 135 Query: 137 YACIGSYNNHI-----------GVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182 A +G+ N + +TL R + + G+ M S G ++ V Sbjct: 136 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAV 195 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +AV T + HL +E A+AK +F + LN DD Sbjct: 196 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR-FDSLRHGLLNLDD 241 >gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] Length = 499 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida W619] gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619] Length = 496 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/403 (21%), Positives = 162/403 (40%), Gaps = 48/403 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ + F A+ G DG D I A+ +GA V + +P+ Sbjct: 18 LIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDALARGAAAVAYEQQGTHVLPITDVPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++ L+ +A R + + ++ +TG+ GKT+ +++ AL ++ + IG Sbjct: 78 IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDALGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEI--RFLTHLVRP--------HIA 187 + L R+ P+ V +++L + + +H + IA Sbjct: 136 TLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKA----KSHA 241 V+T ++ HL +E +AKA++F GL +N DD F L A + Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLR---CQVVNLDDGFGRRLAADFARRPSV 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQ 294 I+T +N+D L C E + + V QG+ + +G Sbjct: 253 DHIETRLLSYSLENSDASL----YCREAKFDDDGVRAIIVTAQGERT-LRSQLLGRFNLS 307 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 NML + + L +D +K GR +R L G L+ Y P +++ Sbjct: 308 NMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQR----LGGGEKPLVVVDYAHTPDALE 363 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 VL + PH G+ + + G + + ++AE L+ Sbjct: 364 ---KVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLA 403 >gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis biovar Abortus 2308] gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 6 str. 870] gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 4 str. 292] gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-acetylmuramyl-tripe [Brucella melitensis biovar Abortus 2308] gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] Length = 488 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] Length = 474 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 148/359 (41%), Gaps = 41/359 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR + F A G DG FI A+ GA V+ + G P + V Sbjct: 13 GMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQE-----GFDWNPAWTV 67 Query: 89 D--DVLGALNKL-AVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 D V G + A+A + + +I +TG+ GKT+ L A +++++ IG Sbjct: 68 DHQPVTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIG 127 Query: 142 SYNNHIGV-----------PLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPH 185 + N P+ L M D + E+ L + R + + Sbjct: 128 TLGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGR--VNGIDFK 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV+T + HL + A AK ++F LN DD+F L ++ A G K Sbjct: 186 VAVLTNLTRDHLDYHGDMASYADAKRKLFH-FGGVQAAILNQDDAFGRALLSELKAKG-K 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG-IGYHMAQNMLMTLGIV 303 + S+G S D +E M+V QG++M VH +G A N+L L + Sbjct: 244 HVLSYGLS-GGDVCGHDLHFDAEGLHMQVHTPQGEAM--VHAKLVGRFNASNLLAVLATL 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ A++ L+ P GR ++ L G L+ Y +P +++ A++ L + Sbjct: 301 LASEVALEDAVRVLADIRPAPGRMQQ----LGGGGQPLVVVDYAHSPDALEKALNALRE 355 >gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae MZO-3] gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae V51] gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae AM-19226] gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae MZO-3] gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae V51] gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae AM-19226] gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae LMA3894-4] Length = 440 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++ M E+ L Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis HS1] gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5] gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5] gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis HS1] Length = 464 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELG 168 IIAITGS GKT+ K L L Y+ + S N +G+ + + + I E G Sbjct: 140 IIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDINQNLDETSTLYIAEAG 199 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 G+I+ + L+ H A+IT I H+ F I+ I KAE+ + Sbjct: 200 ARQKGDIKAIGSLLEHHYAIITEIGNQHIEYFKDIDSIYETKAELLQS 247 >gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria mucosa ATCC 25996] gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria mucosa ATCC 25996] Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQRESKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 12129(1)] gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 12129(1)] Length = 467 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 110/440 (25%), Positives = 182/440 (41%), Gaps = 71/440 (16%) Query: 32 IDSRSIAP-QEAFFAIKGPHYDGHDF--ILHAVQKGAGLVVVN------TDMVASIGSLS 82 ID+R P QE + H G +F +L+A LVV N T + + + Sbjct: 65 IDTRETPPGQEQLSSDVALHRGGWNFEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 119 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV G ++ +IAITGS GK+T + L+ L++ A +G Sbjct: 120 IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 167 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IGVP L + DV+ + EL L T ++ A ++ H+ + G Sbjct: 168 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 220 Query: 203 IEEIASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E+ AK IF+ E T +N YD F HA ++ + +FG + A F L Sbjct: 221 MEDYRQAKLRIFDHAE---TAVVNAYDTQTF-----PDHAAHLQVV-TFGVEQAAQFSLA 271 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + Q E + + E+ +G H N+L L ++ + A+ AL Sbjct: 272 Q-HQGREYLFARDEAVMACAELSL--VGRHNVANVLTVLALLDSAGVNFRLALDAL---- 324 Query: 322 PKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 K G +RC A N G +++S N AS AA+S L EG+ ++G + Sbjct: 325 -KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGV 377 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 + + + LA VL+ + L F V +P + ++M+ + I+ Sbjct: 378 GKGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIR 428 Query: 439 SSLVDGDVVVVKSSNSCGFY 458 L GD+V++ S +C + Sbjct: 429 PQLKSGDMVLL--SPACASF 446 >gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 486 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 38/337 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140 IPV D+LG L +T + I G+ GKT+T M +A+ + + ++A Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G N + + G E+ ++ E +P++AV+T + P HL F Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259 E + + G + + +D L +S GIKT+ Y + A + Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263 Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + +E + + + G+ + V+ G HM N L ++ DVD Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323 Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368 ++ LS F G +R+ A+ G F I + Y +P + A +S +++ G+ Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 GR I + + F + AE LSL + + V Sbjct: 381 GRVIVAF--QPHLYSRTIEFQKEFAEALSLADAAVVL 415 >gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 550 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 127/329 (38%), Gaps = 44/329 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++PV Sbjct: 82 VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 136 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V++ A+ LA K +I +TG+ GKTT ++ ++ IG+ Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196 Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + I TLA M D G+ + M S + + + IA Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237 V T + HL + + AKA +F L GT LN DD FE A Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H L +FG +A + + S + ++ + G V IG NML Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326 D IK+L +GR Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395 >gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium kluyveri DSM 555] gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016] gi|189082874|sp|A5N4L3|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|254766045|sp|B9DY75|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555] gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 458 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 114/289 (39%), Gaps = 27/289 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 F D Q I+ IG+V G N ID + + + F K P G + +K Sbjct: 4 NFDDFKQFIKCKKIGVVGIGISNKPLIDFLLKLGARVSAFDKKSPDEIG-EVARELKEKN 62 Query: 65 AGLVV--------VNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLR-SKATIIAI 113 LV+ + D++ S+ I P F GA + +R A I + Sbjct: 63 VDLVLGEKYLNDLSDFDIIFKTPSMRIDSPAFVKAKEKGAYITSEMEEFIRYCPAKIYGV 122 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTT T + +I K +IG PL + D + + L Sbjct: 123 TGSDGKTTT----TTLMYNILKKQGYKSWIGGNIGTPLFSEVEEITPDDRV----VIELS 174 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + +T + P +AVIT ++P HL +EE AK IF+ + + LN D+ Sbjct: 175 SFQLMTMNISPEVAVITNVSPNHLDIHKDMEEYIMAKKNIFKYQSNSDLLVLNKDNELTN 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQG 278 + ALG +S + N L K C + + E++L+G Sbjct: 235 SMTG--EALGKVRQFSIKEKLNKGGYLNKDSLCIDGDEVCKLSEIKLKG 281 >gi|30316070|sp|Q8RDQ1|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Length = 432 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 173/424 (40%), Gaps = 56/424 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H +G +F + K G+ D V + I + +D++ Sbjct: 32 DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + L++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 79 IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 131 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P I++I I P H+ + +E + K Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + + N DD E ++ ++ + K I S K K AD + +++ + Sbjct: 188 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 238 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + ++ GI H +N L + IL D + + L + P E R + + Sbjct: 239 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELF- 295 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N G I++S N S K AI I + G + +L+ Sbjct: 296 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 340 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 LAE++ NI V+L G +++ L + V Y + + I++SL D K Sbjct: 341 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMRKRFTKD 396 Query: 452 SNSC 455 S+ Sbjct: 397 SDEV 400 >gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 550 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 127/329 (38%), Gaps = 44/329 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++PV Sbjct: 82 VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 136 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V++ A+ LA K +I +TG+ GKTT ++ ++ IG+ Sbjct: 137 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 196 Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + I TLA M D G+ + M S + + + IA Sbjct: 197 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FELLKA 237 V T + HL + + AKA +F L GT LN DD FE A Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H L +FG +A + + S + ++ + G V IG NML Sbjct: 314 -AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNML 366 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR 326 D IK+L +GR Sbjct: 367 AAFAAAYASGIPEDQIIKSLEKVTGVKGR 395 >gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfurihydrogenibium azorense Az-Fu1] Length = 424 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 20/181 (11%) Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVP DV I EL L + T +P IAVI I+ HL ++ Sbjct: 115 GVPFIETAGKNDV--AILELSSFQL----YSTKTFKPKIAVILNISKDHLDWHKKMKHYI 168 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WK 264 +K +IF+ + + LNYDD+ + +KAKS IY F S N Q +K K Sbjct: 169 LSKFKIFKNQTEEDYLILNYDDNCLKQIKAKSQ------IYYF--SLNQLPQDKKGIYLK 220 Query: 265 QCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + LQ K ++V +G H QN++ +L + + D+D +K + F Sbjct: 221 NIEKSGEYILTLQDKEKIDIKVKTSLVGLHNLQNIMASLVVSYLYGLDLDKVLKVIQEFK 280 Query: 322 P 322 P Sbjct: 281 P 281 >gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] Length = 483 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +N I DSR I+ + F AI+G DGH FI A+ +GA ++V + ++ I V Sbjct: 23 INAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEGAKVIVCSKEVEIHEEITYIKVQ 82 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 L + A+ L + + +I ITG+ GKTT+ M+ L + IG+ Sbjct: 83 NTRKALAIM-----ASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILELAGHSTGLIGT 137 Query: 143 YNNHIG 148 +N IG Sbjct: 138 ISNFIG 143 >gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica RCB] gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica RCB] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 154/378 (40%), Gaps = 41/378 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155 LA RL+S IAI G+ GKTTT ++T +A I T+ IG N G L Sbjct: 98 LAELMRLKSG---IAIAGTHGKTTTTSLVTSILAEGGIDPTF-VIGGRLNAAGANARLGS 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL + P I+V+T I H+ + E + SA + Sbjct: 154 -------GDFLVAEADESDASFL--FLSPVISVVTNIDADHMETYGHDFERLKSAFVDFL 204 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273 L G + DD+ + + K I ++G S +F + Q + Sbjct: 205 NRLPFYGVAVVCGDDANIRDILPRVP----KQIITYGLSNECNFHAENIVADNGQMRFDC 260 Query: 274 VQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330 V++ G + + + + G H N L + + + + +KAL+ F R +RY Sbjct: 261 VRVNGTTSRLSITLNTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYG 320 Query: 331 RCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 AL G FTL+D+ Y +P M A ++ P GRR+ + F Sbjct: 321 EVALPAGGSFTLVDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE 376 Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438 D +VLS + ++ ++ +G + D +L R++ V + E + + I Sbjct: 377 -DFVKVLSTVDALCLAEIYAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIM 435 Query: 439 SSLVDGDVVVVKSSNSCG 456 DGDVV+ + S G Sbjct: 436 DVARDGDVVLCMGAGSIG 453 >gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 449 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 20/158 (12%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT ++ ++T G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTTVTSLIGDMFDKSRQT----GLLSGNIGYVASKVAQEAKPEDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L I RPHIA+IT I AHL +EE +AK I++ + Sbjct: 163 LITELSSFQLLGIE----QYRPHIAIITNIYSAHLDYHGTLEEYRNAKRRIYKNQTEDDF 218 Query: 223 IFLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNAD 257 + NY+ + LK+K +Y F S+ D Sbjct: 219 LICNYNQRHLIETDGLKSK--------VYYFSTSQEVD 248 >gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADVVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---GGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E S ++ LQG Sbjct: 252 ETGRLKQGNEDLISTQDIPLQG 273 >gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 489 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 33/283 (11%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNN-----HIG 148 +A+AA + K ++ A+ G+ GKT+T MLT+A+ + + ++A G N H G Sbjct: 108 RAVALAAVMAGKRSV-AVAGTHGKTSTTSMLTVAVQACGVDPSFAIGGDLNESGSNAHAG 166 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 D + E S + FL L+ PH A++T + HL N+ + + + Sbjct: 167 ----------GGDVFVAEADES---DRSFL--LLAPHGAIVTNVEADHLDNYGDLAAVEA 211 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 A + L+ G + L DD L+ ++T +G ++++D +L + E Sbjct: 212 AFDRFLQTLDPAGFVVLCADDPGSARLRTVPTPARVRT---YGTAEDSDLRLVDVEVGPE 268 Query: 269 QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + L G + V + G HMA+N L L + I L F G Sbjct: 269 TTAWTAVLDGDVLGRVPIRVPGEHMARNSAAALLAGLELGLPAEGLISGLGRFG---GVH 325 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 +R+ G + D+ Y +P ++A + ++ G GR Sbjct: 326 RRFELKGTVGGVRVYDD-YAHHPTEVEAQLRAARAVA--GTGR 365 >gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 151/372 (40%), Gaps = 34/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 ++G+++DSR + F A+ G G DFI +A++ GA ++ + + A + + Sbjct: 23 ISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTDAEGARIAAAELAASQ 82 Query: 83 IPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEML----------TIA 129 + V+D LA+ A L AT++A+TG+ GKT+ + + Sbjct: 83 AALVVVED---PRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVRQIWTELGHDAVN 139 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPH 185 L + A + P+TL R + V G+ M SH E R L +V Sbjct: 140 LGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGLEQRRLDGVVL-K 198 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T HL E +AKA +F L G +N DD ++A + A G Sbjct: 199 AAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGAEMRAIAAARG- 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + + G+ D L + + + +GK+ + IG A+N+L+ G+V Sbjct: 258 QNVLTVGRGP-CDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAENILLACGLVI 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L GR + N G +D S+ + A + L + Sbjct: 317 ASGGAPERVFETLPHLGTVRGRMQLAATRAN-GAAVFVDYSHTPD-----AVATALRALR 370 Query: 365 PHGEGRRIAVLG 376 PH GR +A++G Sbjct: 371 PHVMGRLVAIVG 382 >gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 2740-80] gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae NCTC 8457] gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 623-39] gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera CIRS 101] gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae INDRE 91/1] gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 2740-80] gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae NCTC 8457] gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae 623-39] gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera CIRS 101] gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae INDRE 91/1] Length = 440 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++ M E+ L Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 366 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii ATCC 43553] gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii ATCC 43553] Length = 468 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 154/374 (41%), Gaps = 55/374 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L + D+ + E Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL L P +A++T I H+ + + + SA E + L G+ L Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCS 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------K 279 DD+ E++ S + I ++G N D Q+R ++ + M +Q Sbjct: 218 DDANVREIMPFVS-----RPITTYG--LNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLP 270 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------- 331 ++V + G H +N L + + + L D ++L+ F +G G+R+ Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVSDDAIRESLAAF---KGVGRRFTQTGEFPVP 327 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + G FT+ID+ Y +P M A +S P RRI + F D Sbjct: 328 ASHGGGTFTVIDD-YGHHPVEMAATLSAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382 Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440 VL + ++ V+ +G L D AL R++ V + E + L + Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDF 442 Query: 441 LVDGDVVVVKSSNS 454 + DGDVV+V + S Sbjct: 443 VRDGDVVIVMGAGS 456 >gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] Length = 490 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] Length = 490 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989] gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989] Length = 440 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 11/136 (8%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LAR 155 ++ VA R A+TG+ GKTT +L L+ KK+ +IG PL LA Sbjct: 91 EIEVAYRYAKNFDYAAVTGTDGKTTVTTLLFEMLNRQKKSLVA-----GNIGTPLCELAL 145 Query: 156 MPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 D ++ + EL L I RPH++ +T +AP HL +E +K I+ Sbjct: 146 EYTDTNYNVALELSNFQLLGIETF----RPHVSTVTNLAPDHLDYMDSLEAYFESKMRIY 201 Query: 215 EGLEKTGTIFLNYDDS 230 E N DD Sbjct: 202 ENTNADDYFIRNVDDE 217 >gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae M66-2] gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX 330286] gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae B33] gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae RC9] gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio cholerae MJ-1236] gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae M66-2] gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae RC9] gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae B33] gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX 330286] gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae MJ-1236] Length = 467 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 137 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 191 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 192 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 244 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F L + Q E + + E+ +G Sbjct: 245 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ-HQGREYLFARDEAVMACAEL--SLVG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ + A+ AL K G +RC A N G +++S Sbjct: 297 RHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA VL+ + L Sbjct: 351 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLATLPVQ---L 397 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 398 CCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 446 >gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] Length = 476 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 23/247 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ +S + F A+KG +DGH +I A++KGA VV D+ I VF Sbjct: 24 VRAVTNNSLKVGEGFIFVAVKGSIFDGHKYIDEAIKKGAKAVVHTEDVEYREDITYIRVF 83 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 L ++ L + K ++I +TG+ GKTTT +++ + + A IG+ + Sbjct: 84 DPRQTLAEISNL-ITDFPSEKLSVIGVTGTNGKTTTSKLIAYLIEKVFGPCANIGTDGAN 142 Query: 147 IGVPL--TLARMP------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 +G + T P V+ L S G ++ VR + + + Sbjct: 143 VGGEIIETSNTTPDITEINRILEKCVEKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNL 202 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 + HL ++ AK +FE E T N DD + K T SFGK Sbjct: 203 STEHLDYHKTMDAYFKAKMILFENSEIT---IANIDDPW-----GKKAVELFPTTLSFGK 254 Query: 253 SKNADFQ 259 + A+ + Sbjct: 255 DEKANIR 261 >gi|172058258|ref|YP_001814718.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sibiricum 255-15] gi|229620035|sp|B1YKE8|MURC_EXIS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|171990779|gb|ACB61701.1| UDP-N-acetylmuramate--alanine ligase [Exiguobacterium sibiricum 255-15] Length = 431 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 +A L + ++ D LG L A RS +AITGS GKT+T +L+ LS I Sbjct: 77 IARAKELDLTIYHYYDFLGHL-----ADEYRS----VAITGSHGKTSTTGLLSHVLSGIT 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTI 192 T IG + G + A+ V FE + H + +P A++T I Sbjct: 128 PTAFLIG---DGTGAGVAEAKAFV------FEA-------CEYKRHFLYYKPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+GI+++ SA E+ ++ I DD + L+A L Y FG Sbjct: 172 DFDHSDYFTGIDDVVSAFQEM--AMQVKQAIVACGDDEHLQNLQANVPIL----YYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 +N DF+ + + +V L+ + G G H N L + I + + Sbjct: 225 -ENNDFRAENATSTPDGTSFDVYLRDDFYGTFLIPGFGRHHVLNALSVIAICQYEGLNKE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 LS F G KR N G L+D+ Y +P + A I + P E Sbjct: 284 EVAARLSTF----GGVKRRFSETNFGSQILVDD-YAHHPKEISATIESARKKYPDRE 335 >gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 443 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 119/302 (39%), Gaps = 49/302 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L +P++ LG L K T IA++GS GKT+T +L+ +S I+ T Sbjct: 85 ELGLPIYRYHKFLGDLIK---------NYTSIAVSGSHGKTSTTGLLSHVVSHIQPTSYL 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHL 197 IG FG L + H + P A+IT + H Sbjct: 136 IGD----------------GTGFGDEAANYFALEACEYRHHFLAYSPDYAIITNVDFDHP 179 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + I+ + A + F G I +D + L+AK ++ +G S + + Sbjct: 180 DFYPSIDAVFDA-MQTFANQTHKGVIACG-EDEYLRKLEAKV------PVHFYGFSHDNE 231 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTA 313 K ++ E S +V + G E HH G H N L + ++++ D D Sbjct: 232 VYADKIERTPEGSQFDVYING---EFYHHFVLPAFGQHNILNALAVITVLNLEGFDKDLV 288 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + ++ F G +R+ A TLID+ Y +P+ ++A I Q PH R +A Sbjct: 289 AQHIASF---PGVKRRF-SARKVNNLTLIDD-YAHHPSEIRATIDAAQQKFPH--KRIVA 341 Query: 374 VL 375 V Sbjct: 342 VF 343 >gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] Length = 496 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 F +LL+A++ + G V GI+ DSR + P+ F AIKG DGH++I A+++GA Sbjct: 3 FRELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGAL 62 Query: 67 LVVVN 71 VV+ Sbjct: 63 AVVME 67 >gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 526 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 151/385 (39%), Gaps = 50/385 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V I ++++++ F + G H G F A A V+ + D V + Sbjct: 21 PDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQF---ADSSSAAAVLTDHDGVEKVTRED 77 Query: 83 IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P+ VDDV L ++ AV T+I ITG+ GKTTT M+ AL + I Sbjct: 78 LPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKTTTSYMVEAALLHHGISTGLI 137 Query: 141 GSYNNHIG---VPLTLARMPVDVDFGIFEL----GMSH-----------LGEIRFLTHLV 182 G+ I VP TL +F + G++H LG + TH Sbjct: 138 GTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVVMEVSSHAIALGRV-LGTHF- 195 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK--TGTIFLNYDDSFFELLKAK-S 239 +A T ++ HL +E+ KA +F+ T + DD++ + L Sbjct: 196 --SVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSVVCIDDAWGQRLATMLP 253 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGI-GYH 291 H + T +A Q W S S M+ +Q G + +H + G Sbjct: 254 HPFTVST--EAASEHDASLQPDVWAGPS--SVMDNGVQTAELYGFGANEMTLHIPMPGRF 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N ++ +G++ + AI+ LS GR +R C Q F ++D Y P Sbjct: 310 NVANAMLAMGLLVKTGMKAEDAIEGLSTV-TVPGRLERIDCG--QDFMAVVD--YAHKPG 364 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 ++ A VL + H GR V+G Sbjct: 365 AIAA---VLDTLRAHVRGRIAIVVG 386 >gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 465 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 150/359 (41%), Gaps = 47/359 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFE 166 IAITG+ GKTTT ML++ L CI IG L + AR+ D ++ + E Sbjct: 108 IAITGAHGKTTTTSMLSLILEEASADPTCI------IGGELPNFGSNARVG-DSEYVVAE 160 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225 S +R+ P IAVIT I HL +++G +++ + + E ++ +G +F+ Sbjct: 161 ACESDHSFLRY-----SPQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFI 215 Query: 226 NYDDSFFE-LLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSME 282 + + + LL+ S K +FG S++ADF+ K + + + +E L S + Sbjct: 216 YSECEYHDYLLEGMS-----KNCKTFGFSQDADFRATDLKLNKGTTEFTIESDL-ADSFK 269 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G H N L + L +AL F G +R+ T++ Sbjct: 270 VELMVPGEHNILNALAAASVALDLKISPTAIKRALQKF---TGAKRRFMEIGQLQGATIV 326 Query: 343 DESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 D+ Y +P +KA + V++ PH R + D E D Sbjct: 327 DD-YAHHPTEIKATLKTAQEQSDNKVIAIFQPHRFTRTQYFMDDFASSFE-----EADTV 380 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV 449 + ++ + G + LKD + ++ V+ ++ M+ + + + + GD V+ Sbjct: 381 ILHKVFAAGEDEIPGANSKNLKDKIKENVPGLEVYVTDDMEDIAEIVSNIVDKGDYVIT 439 >gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] Length = 483 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 28/244 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR++ + F I+G DGH ++ AV GA V+ + D+ I Sbjct: 23 IREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNGAAAVICSKDIENLTECTVIKTE 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VL AL K +I ITG+ GKTT+ M+ L + +G+ N+ Sbjct: 83 DTRKVL-ALASANYYDHPSDKLKVIGITGTNGKTTSTFMMKSILEAQGYKVGLLGTIANY 141 Query: 147 IG---VP--------LTLARMPVD-----VDFGIFELGMSHLGEIRFLTHL--VRPHIAV 188 +G +P L L ++ + V++ I E+ L +L + V+ A+ Sbjct: 142 VGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIMEVSSHSL----YLDRVYGVKFCQAI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E +AK +F+ T + +N DD + E + S G KT Y Sbjct: 198 FTNLTRDHLDFHKTFENYYNAKLILFKN---TLSSVVNIDDEYGERVYEDSE--GKKTSY 252 Query: 249 SFGK 252 + K Sbjct: 253 AIDK 256 >gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 141/370 (38%), Gaps = 39/370 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G+ DSR I F AI G DGH I +++ GA ++ T V + Sbjct: 12 LSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQTLPVTL--RPDVTYI 69 Query: 87 GVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL ++ K +I +TG+ GKTT +L + I + Sbjct: 70 CVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLGYKVGLISTIC 129 Query: 145 NHIG---VPLT------------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N I VP T L +M + D+ E+ + + R + + Sbjct: 130 NCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIAGLQFKG--GI 187 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKT 246 T + HL + K F+ L N DD F L K+H K Sbjct: 188 FTNLTRDHLDYHKTFDIYRDVKKTFFDLLPTGAFALANKDDKNGAFMLQNTKAH----KK 243 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 YS ADF+ R + + M + + S +V G A N+L G +L Sbjct: 244 FYSL--QSLADFKSRILESHFNGTLMTINDKELSTLLV----GKFNAYNLLAIYGTAILL 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + D + LSV P GR + + +GF ++D Y P ++ ++ +++I Sbjct: 298 GQNSDEILVLLSVLRPVIGRFETLNAS--RGFTVIVD--YAHTPDALINVLNTINEILAR 353 Query: 367 GEGRRIAVLG 376 +G+ I V+G Sbjct: 354 -KGKIITVIG 362 >gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis 053442] gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis 053442] Length = 445 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEYEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + KQ +E + ++ LQ G H A N++ + + + + ++ Sbjct: 252 ETGRLKQGNEDLIATQDIPLQ-----------GLHNATNVMAAVALCEAVGLPREALLEH 300 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + F +G R + ID+S N + AAI+ L Sbjct: 301 VKTF---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN 343 >gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 490 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] Length = 490 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 488 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 38/272 (13%) Query: 19 IGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +GI G +N +++DSR+ F AIKG DG +I A++ GA V+ D Sbjct: 8 LGIDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQ 67 Query: 77 SIGSL----SIPVFGVDDVLGALNKLA-VAARLRSK-ATIIAITGSVGKTTTKEMLTIAL 130 + IP+ + L++LA V + SK T++ +TG+ GKTTT ++L Sbjct: 68 QHLQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWT 127 Query: 131 SSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGE 174 + T A +G+ N + G + + D DF E+ SH G Sbjct: 128 QLLGHTGAVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVS-SH-GL 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ V AV T ++ HL +E A+AK +F L+ I ++ DD + Sbjct: 186 VQHRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQI-IDADDPVGAV 244 Query: 235 LKAK-SHALGIKTIYSFGKSKNADF--QLRKW 263 A+ HA+ + S ADF Q W Sbjct: 245 WLAEMPHAVAV--------SAKADFLPQQANW 268 >gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] Length = 490 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 488 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi ATCC BAA-1116] gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 47/372 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ + +DSR + F AI G DG FI A+++GA V+ + G++ I Sbjct: 24 LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI-- 81 Query: 86 FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137 VDDV L AL+K +A L + T +I +TG+ GKTT +++ + + Sbjct: 82 --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139 Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ N + + TL+ + + L +S G I+ + Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238 V T ++ HL +EE A+AK +F + G +N DD ++ + L Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296 + A+ +K F +S A+ +S + ++ GK E H IG A N+ Sbjct: 257 ALAVSLKPTTEFSQSVYANH------IAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ + L + P GR + ++ N ++D Y P +++ A Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQA--NDNAKVVVD--YAHTPDALEKA 366 Query: 357 ISVLSQISPHGE 368 + L ++ HGE Sbjct: 367 LQAL-RVHCHGE 377 >gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio vulnificus CMCP6] gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus CMCP6] Length = 442 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 31/300 (10%) Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LVV N + + + + V+G + A AA +IAITGS GK+T + Sbjct: 69 ADLVVTNPGIALATPQIQTVLARGVAVVGDIELFAWAA----DKPVIAITGSNGKSTVTD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 LT +++ IG +IGVP L + +V+ + EL L E HLV Sbjct: 125 -LTGVMANACGVKCAIG---GNIGVP-ALDLLEQEVELYVLELSSFQL-ETTSSLHLV-- 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A ++ H+ + G+++ AK IF+ K G + N DD + SH Sbjct: 177 -AAAFLNLSEDHMDRYQGMDDYRQAKLRIFQH-AKHGVV--NRDDR--QTYPETSHGQQS 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG S + +F + + +SW+ Q +G H N+L+ L +++ Sbjct: 231 LALVTFG-SDDKEFGVISHQ---GESWLSYNQQPILASRELKLVGQHNVANVLVVLALLT 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLS 361 D + AL + G +RC A N+G +++S N AS +AA+S L+ Sbjct: 287 CAGIDYRKGLSALKSY-----TGLTHRCQVVADNRG-IKWVNDSKATNLASTQAALSGLN 340 >gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis ATCC 23445] gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 3 str. Tulya] gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC 23445] gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] Length = 488 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|33322727|gb|AAQ07098.1|AF496410_1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl lig [Lactobacillus delbrueckii subsp. lactis] Length = 109 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++ + YN+NP ++KA + Q+ GRRIAVL DM E+G S H LA L Sbjct: 9 IMSDIYNSNPTAVKAVTAXFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDK 68 Query: 401 ISHVWLSGFHVLALKDAL 418 I+ ++L G + L AL Sbjct: 69 INVLYLYGPEMNXLYQAL 86 >gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella canis ATCC 23365] gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC 23365] Length = 488 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|167614204|gb|ABZ89707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera aphidicola] Length = 439 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 48/346 (13%) Query: 110 IIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IIAITG+ GK+T M+T IA +S A +G +IG P+ L + D I EL Sbjct: 108 IIAITGTNGKSTVATMITKIAQNS--GYNALLGG---NIGCPV-LNLLHQKRDLYIIELS 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 L T ++ I+VI I H++ + G E+ K I+ G E +N Sbjct: 162 SFQLEN----TFNLKSKISVILNIHEDHINRYPQGFEQYKKTKLSIYHGAE---ICIMNS 214 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D ++ K+ K SFGK KN+D+ + K ++ S++ L K+ ++++ Sbjct: 215 HDQLNDIFDDKN-----KHYISFGK-KNSDYYIYK----NDTSFI---LCCKNEKILNSS 261 Query: 288 ----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 GYH N+L+++ I + I L F R++ N+ I+ Sbjct: 262 ELLLSGYHNYNNVLVSIAIADAMKFSRQYTIYTLKNF---SSLPHRFQTIQNKNNIDWIN 318 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +S + N S + A++ L++ +G +LG + G +F+I L + + NI Sbjct: 319 DSKSTNVNSTQVALNSLTK-----KGTIHLLLGGDSKSG----NFNI-LKKYFNKKNIKI 368 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V K +SI+V E + L I ++ GD V++ Sbjct: 369 YCFGKDGVKIFKICKKKSIYV---ENLKQAMLLISKTVKSGDTVLL 411 >gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 467 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 119/299 (39%), Gaps = 33/299 (11%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L IPV ++L L KL IA++GS GKTTT M+ L Sbjct: 88 ELGIPVIPRGEMLAELFKLKEG---------IAVSGSHGKTTTTSMVAHILEE------- 131 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 ++ + + L R+ + G +L +S E + P + VIT I H+ Sbjct: 132 -AGFDPTVIIGGILQRLGSNAKLGRGDLLVSEADESDGSFLKLSPAVNVITNIDLEHMDY 190 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + +E+I +A A+ + G N DD + A S K + +FG K AD Sbjct: 191 YRDLEDIVAAFAKFAGSVPFYGFCVANADDP--NVRNATSSV--TKKLITFGIEKEADVV 246 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + V +G+ + + I G H N L + L + AL Sbjct: 247 GTELSIEGGRYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSLELGVPFEVVRSALE 306 Query: 319 VFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 FH E R + +GFF I + Y +P ++A +S L ++ P GRR+ ++ Sbjct: 307 GFHNAERRMEL------KGFFGGVPIYDDYGHHPTEIRAVVSALREMYP---GRRLVMV 356 >gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78] gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78] Length = 470 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 21/220 (9%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACI 140 IPV D L AL + +AI G+ GKTTT ML ++L+++ +YA Sbjct: 94 IPVVHRSDALAAL---------MAGTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIG 144 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G + P + A G E+ ++ E H P +AV+ + H +N+ Sbjct: 145 GDLD----APGSNAH------HGTGEIFVAEADESDRSFHTYAPEVAVVLNVELDHHANY 194 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + IEEI + + GT+ ++ D L + + ++G +++AD ++ Sbjct: 195 ASIEEIYESFETFVGKIVPGGTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRV 254 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K S + V L GK + G H A N + L Sbjct: 255 HKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAAL 294 >gi|301056196|ref|YP_003794407.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis CI] gi|300378365|gb|ADK07269.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus biovar anthracis str. CI] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama I] gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama I] gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS] Length = 468 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 75/439 (17%) Query: 53 GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 GHD A GAG +V +T + V + + IPV +L L +L Sbjct: 56 GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107 Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 IA+ G+ GKTTT ++ +A + T+ IG LT A + G Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGQGE 155 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 + + + + FL L P +A++T I H+ + + + SA E + L G+ Sbjct: 156 YIVVEADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSA 213 Query: 224 FLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 L DD+ E++ S + I ++G S +A Q+ ++ + M +Q + + Sbjct: 214 ILCADDANVREIMPFVS-----RPITTYGLSPDA--QVCAQDVQADGTRMRFTVQRRDRD 266 Query: 283 VVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR--- 331 VV + G H +N L + + + L D D AI+ AL+ F +G G+R+ Sbjct: 267 VVLPALQVELNLPGLHNVRNALAAIAVATELGVD-DAAIREALAAF---KGVGRRFTQWG 322 Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 A G FTL+D+ Y +P M A ++ P RRI + Sbjct: 323 DLPVPAAHGGGIFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRIVLAFQPHRYTRTRD 378 Query: 387 SFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFL 435 F D VL + ++ V+ +G L D AL R++ V + E + L Sbjct: 379 CFE-DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQ 437 Query: 436 FIQSSLVDGDVVVVKSSNS 454 I + DGDVVVV + S Sbjct: 438 AILDFVRDGDVVVVMGAGS 456 >gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] Length = 494 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/332 (22%), Positives = 132/332 (39%), Gaps = 51/332 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + +++G +VVVN ++ + + +P Sbjct: 23 VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELEGDVTQVIVP 82 Query: 85 VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + L VA+ L + T +TG+ GKT+ M+ + + K+ Sbjct: 83 -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKS 131 Query: 137 YACIGSYNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFL 178 A +G+ I P T++ ++ VD G + + SH LG +R Sbjct: 132 SAYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRG- 190 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234 V +A+ + + HL +E AK+ +F E L K + LN DD F Sbjct: 191 ---VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGY 247 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L + ++++G A F + + + ++ V +G Sbjct: 248 LA----NVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYHVKSPYVGRFNIS 303 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V A ++ I A++ P EGR Sbjct: 304 NIMAAIIAVWSKGATMEEIINAVTSLEPVEGR 335 >gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MO10] gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK 757] gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MO10] gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK 757] Length = 444 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 114 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 168 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 169 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 221 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG + A F L R++ +++ M E+ L Sbjct: 222 T----QTFPDHAAHLQVV-TFGVEQAAQFSLAQHQGREYLFARDEAVMACAELSL----- 271 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 272 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 319 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 320 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 369 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 370 LPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 423 >gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio ammonificans HB-1] gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio ammonificans HB-1] Length = 413 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 42/309 (13%) Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + AV K G+ N ++ IPV+G ++ + R S + I++TG+ Sbjct: 41 IAAVVKSPGVPPRNP-LLEKAKRAGIPVYG---------EVELGYRF-SSGSFISVTGTN 89 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIR 176 GK+TT ++ AL + G+Y G+PL T A + F EL +I Sbjct: 90 GKSTTTAVIYHALKLSGRESFIGGNY----GIPLSTFALDTTEESFTALELSSF---QIE 142 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT R ++V + P HL+ +S EE AK + L+ + +N DD F+ LK Sbjct: 143 DLTSF-RSRVSVFLNVTPDHLNRYSSFEEYREAKLRL---LDFSDCAVVNGDDPSFKHLK 198 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K LG IY+F S ++ R + S + + ++ +H+ Y A Sbjct: 199 GK---LG---IYTFSVSTDSGADARVEGELLVFSGYRIPYRELPLKGIHNLENYLAALVA 252 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMK 354 L +G+ ++ KA +G +RC + +G +++S NP +MK Sbjct: 253 LAVVGLSE---EEIYEGFKAF--------KGLPHRCEVVGRKGGVVFVNDSKATNPDAMK 301 Query: 355 AAISVLSQI 363 A+ + Sbjct: 302 KALESFRSV 310 >gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 488 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|256850823|ref|ZP_05556212.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260661034|ref|ZP_05861948.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|282934508|ref|ZP_06339763.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii 208-1] gi|297205696|ref|ZP_06923091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615885|gb|EEU21073.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260547971|gb|EEX23947.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|281301455|gb|EFA93744.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii 208-1] gi|297148822|gb|EFH29120.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii JV-V16] Length = 435 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 32/260 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L+ T IG R D F ++E Sbjct: 106 TSIGISGAHGKTSTTALLSHVLTEAAPTSYLIGDGE---------GRGVKDSRFFVYE-- 154 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F I + SA + +K +F+ Sbjct: 155 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVW 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + ++ K Y++G + DFQ K+ ++ + V+ GK + E Sbjct: 208 GDDPRLQKIETKIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKT 261 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N L +G+ ++ K L + G KR + G T+ID+ Sbjct: 262 HLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD- 316 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P MKA I Q P Sbjct: 317 YAHHPTEMKATIQAAKQKFP 336 >gi|30264759|ref|NP_847136.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Ames] gi|47530235|ref|YP_021584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187576|ref|YP_030829.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Sterne] gi|52140819|ref|YP_086015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L] gi|65322056|ref|ZP_00395015.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bacillus anthracis str. A2012] gi|118479825|ref|YP_896976.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|165869729|ref|ZP_02214387.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0488] gi|167634042|ref|ZP_02392365.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0442] gi|167637992|ref|ZP_02396270.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0193] gi|170685837|ref|ZP_02877060.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0465] gi|170705461|ref|ZP_02895925.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0389] gi|177651186|ref|ZP_02934017.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0174] gi|190568261|ref|ZP_03021169.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196032962|ref|ZP_03100375.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W] gi|196040822|ref|ZP_03108120.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99] gi|196043730|ref|ZP_03110967.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108] gi|218905917|ref|YP_002453751.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820] gi|225866676|ref|YP_002752054.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB102] gi|227817477|ref|YP_002817486.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. CDC 684] gi|228917339|ref|ZP_04080893.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929741|ref|ZP_04092758.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948436|ref|ZP_04110719.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093789|ref|ZP_04224888.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42] gi|229124255|ref|ZP_04253447.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201] gi|229186944|ref|ZP_04314098.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1] gi|229602579|ref|YP_002868966.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0248] gi|254687497|ref|ZP_05151353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254725061|ref|ZP_05186844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. A1055] gi|254736798|ref|ZP_05194504.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254741835|ref|ZP_05199522.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Kruger B] gi|254754567|ref|ZP_05206602.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Vollum] gi|254757399|ref|ZP_05209426.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Australia 94] gi|300118871|ref|ZP_07056584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1] gi|33301353|sp|Q81KQ2|MURC_BACAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|59798169|sp|Q633A2|MURC_BACCZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222955|sp|A0RJS6|MURC_BACAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226711858|sp|B7JS63|MURC_BACC0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254763737|sp|C3PBF0|MURC_BACAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254763738|sp|C3L9Z3|MURC_BACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254763739|sp|C1EV43|MURC_BACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|30259434|gb|AAP28622.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. Ames] gi|47505383|gb|AAT34059.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181503|gb|AAT56879.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. Sterne] gi|51974288|gb|AAU15838.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L] gi|118419050|gb|ABK87469.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|164714558|gb|EDR20077.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0488] gi|167513809|gb|EDR89177.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0193] gi|167530843|gb|EDR93545.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0442] gi|170129586|gb|EDS98449.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0389] gi|170670301|gb|EDT21041.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0465] gi|172083012|gb|EDT68074.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0174] gi|190560517|gb|EDV14494.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|195994391|gb|EDX58346.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W] gi|196025066|gb|EDX63736.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108] gi|196028276|gb|EDX66885.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99] gi|218539138|gb|ACK91536.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820] gi|225790517|gb|ACO30734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 03BB102] gi|227004616|gb|ACP14359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CDC 684] gi|228596498|gb|EEK54164.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1] gi|228659557|gb|EEL15205.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201] gi|228689674|gb|EEL43482.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42] gi|228811423|gb|EEM57761.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829920|gb|EEM75540.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842329|gb|EEM87423.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266987|gb|ACQ48624.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. A0248] gi|298723716|gb|EFI64445.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid adding enzyme, MurD [Streptococcus oralis Uo5] gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid adding enzyme, MurD [Streptococcus oralis Uo5] Length = 450 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISDAPIIGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAQ 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAADE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQIIKEILSAF 307 >gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca ATCC 29256] gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca ATCC 29256] Length = 445 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 450 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQNNMAAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATKTQA----TVVPFSTKEKVDGAYLENGQLYFRG--EVVMAASE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGVDNQIIKETLSAF 307 >gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] Length = 499 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|42783876|ref|NP_981123.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10987] gi|49481451|ref|YP_038734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206978123|ref|ZP_03239006.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97] gi|217962174|ref|YP_002340744.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH187] gi|228987941|ref|ZP_04148048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141422|ref|ZP_04269960.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26] gi|229158298|ref|ZP_04286365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342] gi|229198852|ref|ZP_04325544.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293] gi|48428295|sp|P61675|MURC_BACC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|59798279|sp|Q6HCJ2|MURC_BACHK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226711861|sp|B7HSM3|MURC_BACC7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|42739806|gb|AAS43731.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 10987] gi|49333007|gb|AAT63653.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206743659|gb|EDZ55083.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97] gi|217066938|gb|ACJ81188.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH187] gi|228584626|gb|EEK42752.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293] gi|228625256|gb|EEK82016.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342] gi|228642203|gb|EEK98496.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26] gi|228771806|gb|EEM20265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324328581|gb|ADY23841.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 489 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 152/380 (40%), Gaps = 56/380 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 ++GI+ DSR + P + F I G DGH F A++ GA V+ D L+ P Sbjct: 23 ISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGAVAVLAERQLDTGGKATLLTTP 82 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D AL LA R ++A+TG+ GKTTT +++ L K A +G+ Sbjct: 83 -----DTRSALALLAANYYGRPSKSIRVVAVTGTNGKTTTTDLIKAILEEAGKKTAIMGT 137 Query: 143 YNNHIG---------VP--------LTLARMPVDVDFGIFE-----LGMSHLGEIRFLTH 180 +G P + L R D+ + E L + + EI F Sbjct: 138 LYAQVGEIQREMQHTTPEALEIESFMALCREE-KADYIVMEVSSHALQLQRVAEIDF--- 193 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAK 238 ++AV T + HL ++ +AK ++F+ + EK +N DD + E + Sbjct: 194 ----NVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAIINIDDPWAEEI--- 246 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I S+G K +D+Q + K + S + S+ + IG N L Sbjct: 247 FQAATIPC-RSYGIKKRSDYQAGELKIDLDGSSFRLHYGDNSLMINMKLIGLFSIYNALA 305 Query: 299 TLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L +D + AL+ GR ++ C Q F ++D Y P ++ Sbjct: 306 AISFA--LQEGIDPGLIQSALARVEGVPGRFEKVDCG--QDFAVIVD--YAHTPDGLE-- 357 Query: 357 ISVLSQISPHGEGRRIAVLG 376 ++L G+ R I V G Sbjct: 358 -NILQTSRELGKKRLICVFG 376 >gi|116512986|ref|YP_811893.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp. cremoris SK11] gi|123320128|sp|Q02W92|MURC_LACLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116108640|gb|ABJ73780.1| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 443 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + G+ GKT+T ML +S+I T IG R ++ +FE Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGNAGSEYFVFE-- 152 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++T I H F GIE++ SA + ++K IF + Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D L AK+ IY +G N D++ + + S + +G+ + V Sbjct: 208 DVNLRKLSAKA------PIYYYGFEANDDYRAENLIRNTRGSSFDAYFRGEKIGHFVVPA 261 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L D+ L F RG + R + T+I + + Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTDVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381 +P ++A + Q PH R IA + E+ Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360 >gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 495 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 147/379 (38%), Gaps = 50/379 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ +DSR +AP +AF AI G G F+ A GAG V+ + + +P Sbjct: 22 VCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEP---PAPNGMPVPAD 78 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V G +L V A R ++ +TG+ GKT+T ++L A++ + +G Sbjct: 79 AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPTGTLG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185 + +GV L A +P + + L ++R + V H Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237 +AV T + HL + + +AKA++F GL+ +N DD+F F L Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDAFGRTLFASLDP 250 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A+G+ S +A + + + +QG+ V +G N+L Sbjct: 251 ALRAIGV----SSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLL 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 G + L L P GR R A L+ Y P +++ A+ Sbjct: 307 AVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363 Query: 358 SVLSQISPHGEGRRIAVLG 376 S L H + R I V G Sbjct: 364 SSLRS---HAQDRLICVFG 379 >gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH] gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH] Length = 470 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155 KLA + I+AIT S GKT+ K L L K Y S N G+ + Sbjct: 141 KLAKEKLTKIDPKIVAITASYGKTSIKNFLYQLLEGTFKVYKTPRSVNTLKGIIKDINVD 200 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 MP +++ I E G G+I + + +++ I P H+ F ++ I K EIF+ Sbjct: 201 MPENIEIYIAEAGAREKGDILEIVEFLENEYSILGKIGPQHIEYFKTLDNIKQTKLEIFK 260 >gi|228935998|ref|ZP_04098808.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823766|gb|EEM69588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 23/202 (11%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138 LS+PV D L +L LRS IA+ G+ GKTTT ML +AL+ + +YA Sbjct: 92 LSVPVVHRSDALASLMT-----GLRS----IAVAGTHGKTTTTSMLAVALTELGLDPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + P T AR D D + E S ++ P +A++ + H + Sbjct: 143 IGGDLDG----PGTNARHG-DGDIFVAEADESDRSFQKY-----DPEVAIVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 N++ ++EI + E F G + GT+ ++ D + L AK I ++G+S+ AD Sbjct: 193 NYASMDEIYESF-ETFAGKIVPGGTLVISADQAGAVELTAKVRDRSSVKIVTYGESEAAD 251 Query: 258 FQLRKWKQCSEQSWMEVQLQGK 279 ++ K S + V L G+ Sbjct: 252 VRVHKITPRGLTSEVTVLLDGR 273 >gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia typhi str. Wilmington] gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington] Length = 457 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT +++ L+S Y G +IGVP A+ D + EL Sbjct: 107 IAITGTNGKSTTAALISHILNSNGLDYTVAG----NIGVPALQAKASKDG--YVLELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T +AV+ I P HL + + +AKA+IF+ ++K +N D+ Sbjct: 161 QLDLVKIFT----VKVAVLLNITPDHLDRYQDMNGYIAAKAKIFDRMDKDSYAVINIDND 216 Query: 231 F 231 + Sbjct: 217 Y 217 >gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp. 12_1_47BFAA] gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium longum subsp. longum F8] gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp. 12_1_47BFAA] Length = 481 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 32/276 (11%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + A I ITG+ GKT+T EM + L++ G+ + + ++L+R + Sbjct: 96 RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASG-DMSMSLSRCATNPQH 154 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + + +S ++ F L A IT IA HL G E A+ K+++F K Sbjct: 155 DVLCVELSSF-QLHFTDSLAL-DCAAITNIADDHLDWHGGRENYAADKSKVFHNA-KRAI 211 Query: 223 IFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 ++ D EL A A G + + ++ + + E W+ V G + Sbjct: 212 VYNAQDAKVSELAAAAQTAEGCRKVGFTLEAPQAGQIGI-------EDGWI-VDRSGVAG 263 Query: 282 EVVHHGIGY------------------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 V + H+ + L L +V L AD DTA+KAL+ F P Sbjct: 264 GAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPG 323 Query: 324 EGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS 358 R + A+ G +D+S N + +A++S Sbjct: 324 GHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLS 359 >gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC 15579] gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC 15579] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A I +TGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 ANIFGVTGSDGKTTTTTLVYEMLK--KEGYKTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ E + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVEAKKNIFKYQENNDLLV 225 Query: 225 LNYDDSFFELLKAKSHALG 243 LN DD + + ALG Sbjct: 226 LNKDDELTN--RMEKEALG 242 >gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum SS9] gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Photobacterium profundum SS9] Length = 506 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 30/245 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++IDSR I + F A+ G DG FI A+ GA V+ D +A G + Sbjct: 32 VVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNIAKHGDIVEQDG 91 Query: 87 GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V LN+ A+A R ++ ++A+TG+ GKTT ++L + I + Sbjct: 92 IVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNAGVM 151 Query: 141 GSYNNHIGVPLTLA--------RMP------VD--VDFGIFELGMSHL--GEIRFLTHLV 182 G+ N + LT A +P VD DF E+ L G ++ L + Sbjct: 152 GTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLVQGRVKALQFVA 211 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHA 241 ++ T ++ HL + A AK +F + G +N DD F L HA Sbjct: 212 ----SIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDIGFTWLADLPHA 266 Query: 242 LGIKT 246 + + T Sbjct: 267 VAVVT 271 >gi|257459539|ref|ZP_05624648.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268] gi|257442964|gb|EEV18098.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268] Length = 592 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFEL 167 TII IT S GKT+ K L L S + Y S N G+ + +P D I E Sbjct: 174 TIIQITASYGKTSIKNFLYQILKSDFRCYKTPRSVNTLAGLVRDVNEALPTDTQIYIAEA 233 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 G G+I +T + P I V+ I H+ F IE I K E Sbjct: 234 GARLSGDIAEITEFLAPQIVVVGEIGAQHIEYFKSIENIRKTKLE 278 >gi|167912655|ref|ZP_02499746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 112] Length = 158 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 7/78 (8%) Query: 317 LSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAV 374 L F P +GR + R A T+ID++YNANP SM AAI VL +Q +P R+ V Sbjct: 2 LEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMLAAIDVLAAQSAP-----RVLV 56 Query: 375 LGDMCEMGELSQSFHIDL 392 +G+M E+G+ +FH ++ Sbjct: 57 IGEMGEVGDEGPAFHREI 74 >gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans ATCC 25259] Length = 463 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 156/379 (41%), Gaps = 45/379 (11%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++ L + + TY IG LT A Sbjct: 98 LAELMRLRQG---IAIAGTHGKTTTTSLVASILGEAGMDPTYV--------IGGKLTAAG 146 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 + G F + + + FL + P IA++T I H+ + + + +A + Sbjct: 147 TNARLGQGDFLVAEADESDASFL--YLTPVIAIVTNIDADHMDTYGHDFDRLKTAFVDFC 204 Query: 215 EGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 + L G L DD+ E+L + + T Y F + Q+R E M Sbjct: 205 QRLPFYGMAVLCIDDANVREILPRITKPI---TTYGFDPAA----QVRAVDTRFEHGQMR 257 Query: 274 VQLQGKSM---EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 ++ + M +V + G H N L + + + + A +KAL+ FH R +RY Sbjct: 258 FTVKREGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRY 317 Query: 331 --RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + G + LID+ Y +P M A ++ P GRR+ ++ F Sbjct: 318 GEHPTKDGGCYWLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLVFQPHRYSRTRDCF 373 Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437 D +VLS + ++ V+ +G + D AL R++ V + E + + + Sbjct: 374 E-DFVKVLSETDALVLTEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVENVADVAATV 432 Query: 438 QSSLVDGDVVVVKSSNSCG 456 + + DVV+V + S G Sbjct: 433 RDLVQADDVVLVMGAGSIG 451 >gi|15615810|ref|NP_244114.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus halodurans C-125] gi|20139205|sp|Q9K7W1|MURC_BACHD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|10175871|dbj|BAB06967.1| UDP-N-acetylmuramate-alanine ligase [Bacillus halodurans C-125] Length = 433 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 133/346 (38%), Gaps = 65/346 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T IA+TGS GKT+T +L+ L S T IG + D + +F Sbjct: 99 QRFTSIAVTGSHGKTSTTGLLSHVLGSHCPTSFLIGD---------GTGKGAADSHYFVF 149 Query: 166 ELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E + H + RP ++T I H F I ++ SA E+ ++ I Sbjct: 150 EA-------CEYRRHFLNYRPDYCIMTNIDFDHPDYFDDINDVFSAFQEM--AMQVKKAI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD + + A + +Y +G +++ DFQ R + SE + +V ++ Sbjct: 201 VACGDDEQLQGIHAN-----VPVVY-YGFNEDNDFQARNIEVTSEGTHFQVFVRNN---- 250 Query: 284 VHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 H+G G H N L + + V+ + L F EG +R+ G Sbjct: 251 -HYGDFTIPRFGKHNVLNSLAVIALCHYENIPVEVLARELKTF---EGVKRRF-TEKTLG 305 Query: 338 FFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQS 387 LID+ Y +P + A I Q PH R A L + E L Q+ Sbjct: 306 GQILIDD-YAHHPTEISATIEAAKQKYPDRPVVAIFQPHTFSRTKAFLHEFAEA--LKQA 362 Query: 388 FHIDLAEV----------LSLYNISHVWLSGFHVLALKDALPRSIH 423 H+ L ++ LS+ ++ + G H+L+ D P H Sbjct: 363 DHVYLCDIFGSARENKGSLSIEDLQ-ALIPGAHLLSENDLAPLQDH 407 >gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] Length = 489 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 43/381 (11%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ + + +D+R + P F A+KG DG F+ A QKGA ++ + L Sbjct: 16 APEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAILFDNSDGFVPSEL 75 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML------------- 126 SIP V + +++LA K ++ +TG+ GK+T +++ Sbjct: 76 SIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQLIANWTELFGQRGGV 135 Query: 127 --TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183 T+ + +A + + I + LAR + VD E+ SH G ++ ++ Sbjct: 136 LGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS-SH-GLVQHRVSALQ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-----FFELLKAK 238 AV T ++ HL ++ A AK IF+ I LN DD+ ++ +A Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCI-LNADDATAREWLLQMPQAV 252 Query: 239 SHALGIKTIYSFGK---SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + + G + + + + SW + L + G N Sbjct: 253 VYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLL-------GKFNVSN 305 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L L ++ +L D +T + S P G R C NQ L+ Y P ++ Sbjct: 306 LLAALAVMLVLQYDFETLCQTASRLQPVTG---RMECFGNQD-QPLVVVDYAHTPDGLEK 361 Query: 356 AISVLSQISPHGEGRRIAVLG 376 A+ Q H G + G Sbjct: 362 ALQAARQ---HCHGHLFCLFG 379 >gi|222098159|ref|YP_002532216.1| udp-N-acetylmuramate--l-alanine ligase [Bacillus cereus Q1] gi|254765803|sp|B9J189|MURC_BACCQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|221242217|gb|ACM14927.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Q1] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] Length = 779 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 35/320 (10%) Query: 63 KGAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV+T D V I + L IP L++ + A L + IA+ GS Sbjct: 70 RGADAIVVSTAIPYDNVEVIAAWDLRIP---------KLHRSDINAALVNAYDGIAVAGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+ + L C G + I V + + + G +S E Sbjct: 121 HGKTTTTSMIGVTLD-------CAG-VSPTIIVGGEVPDLGTNAKLGTGRYLVSEADESD 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +RPHIAV+T + H+ ++ +E+I A + + GT L +++ + Sbjct: 173 GSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFVDQTDADGTAVLCFENEILRQIA 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ + S+ AD++ + S S+ + + V+ + G H N Sbjct: 233 CETPC----RVVSYAIDAEADYRAADMETHGSVISFTAFERGAEMGRVLLNIPGRHNVLN 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + + +AL+ FH G +R++ + ++D+ Y +P + A Sbjct: 289 ALACIAVARLAGVEFPEIRRALAQFH---GAKRRFQTKGKERGVWVVDD-YAHHPTEIAA 344 Query: 356 AISVLSQISPHGEGRRIAVL 375 ++ Q +P GR I V Sbjct: 345 TLAAARQTNP---GRLICVF 361 >gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] Length = 468 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 92/412 (22%), Positives = 171/412 (41%), Gaps = 42/412 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++ DSR + +AF AI+G DG+ +I AV++GA +V + I + V Sbjct: 7 ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTERE----IDHREVQVV 62 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VD+ L +LA V ++ +TG+ GKTTT ++ S T IG+ Sbjct: 63 KVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLIGTVK 122 Query: 145 NHIGVPLTLARMP--------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +G + A + VD + I + +S G + I V T Sbjct: 123 IKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDIVVYT 182 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL E+ + K E+F+ + T +N DD + + + + A + ++ Sbjct: 183 NLTKDHLDLHEDFEDYLATKKELFKQAGEESTALINLDDEYADRIMSGLSA----EVITY 238 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 G S AD Q+ + + S ++ + E+ + +G H N L + I Sbjct: 239 GFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLIYG 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V+ L F+P R + + FT+ID+ + NP + +A + ++ Sbjct: 299 LSVEEIKAQLKEFNPFFRRLE----VIYDDKFTIIDDCAH-NPGNYRAVFETIKELDYD- 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----NISHVWLSGFHVLALK 415 R+ ++ + G + + AE++S Y N+S ++++ LA K Sbjct: 353 ---RLYIINAI--RGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANK 399 >gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] Length = 533 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 54/368 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83 + GI++ ++ + P + F A+ G G + A+++GA V+ + +++A S+ Sbjct: 22 LTGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAAVLTDRAGAELLAGTDLGSV 81 Query: 84 PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V+ + LGA+ + R A ++ +TG+ GKTTT +L AL++ A I Sbjct: 82 ALLVVERPREHLGAIARQLYGDPSRRLA-VVGVTGTSGKTTTCYLLEAALAADGSRSAVI 140 Query: 141 GSYNNHIG------------VPLTLARMPVDVDFGIFELGM---SH---LGEI---RFLT 179 G+ I P A + V V+ G+ + M SH LG + RF Sbjct: 141 GTVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFA- 199 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238 + T ++ HL +E+ AKA +F+G + G ++ D + L A+ Sbjct: 200 ------VGAFTNLSQDHLDFHHDMEDYFRAKAMLFDG--RAGAHVIDVDTEYGARLAAEH 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQN 295 AL + + AD+ + + + V L G V + G N Sbjct: 252 PEALTVSD-----RPGAADWSV-EMVTLAANGVQHVVLSGPGKRQVTLDLAIPGAFNVGN 305 Query: 296 MLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + L V L DV A AL +V P G+ R Q F ++D Y P ++ Sbjct: 306 AAVALACVDALGRDVQQAADALATVVVP----GRMERVDAGQDFLAVVD--YAHKPGAVA 359 Query: 355 AAISVLSQ 362 A + + Q Sbjct: 360 AVLDAIGQ 367 >gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis OX99.30304] Length = 445 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNVDDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273 >gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus haemolyticus JCSC1435] gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus haemolyticus JCSC1435] Length = 494 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 39/326 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 V I+ DSR+ + F A KG D H F + V +GA ++VVN D+ + + +P Sbjct: 23 VTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQGAKVIVVNHQQDINGDVTQVIVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + T I +TG+ GKT+ M+ + + K A +G+ Sbjct: 83 -----DTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSIATMIHLIYRGLGKGSAYLGT 137 Query: 143 YNNHIG---------VPLTLA-----RMPVDVDFGIFELGMS----HLGEIRFLTHLVRP 184 I P T++ + VD + + +S LG +R V Sbjct: 138 NGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTMEVSSHGLSLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K LN DD F + L Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAVLNNDDDFSKYLA---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ I+++G +A F + ++ + + + V +G N++ + Sbjct: 250 SVTPYEIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYSVKTPYVGKFNISNIMAAM 309 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR 326 V ++ ++ + P EGR Sbjct: 310 IAVWSKGTSMEDIVRVVENLEPVEGR 335 >gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 431 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 19/226 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ P + + A+ G + G DF A GA V+ + + +PV Sbjct: 49 ITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAAVLTDESGAERAAATGLPVL 108 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 ++ G + +LA + I ITG+ GKTTT ++ L + ++ IG+ Sbjct: 109 VTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTTTAYLVEGGLKAAGRSTGLIGTVE 168 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + V H IAV Sbjct: 169 MRIGDERIKSERTTPEATDLQALFAVMRERG-ADAVAMEVSSHALVLGRVDGCVFDIAVF 227 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 ++P H+ S +E+ AKA++F ++ +N+DD + L Sbjct: 228 NNLSPEHMEFHSDMEDYFQAKAQLFT-PRRSREAVVNFDDEYGRRL 272 >gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] Length = 509 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84 + G+S+DSRSIA E F A+KG DG FI A+ +GA VV + S+ IP Sbjct: 33 ITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDFDFSSVPNDIP 92 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V ++ L+ +A +I +TG+ GKTT ++L + + + A IG+ Sbjct: 93 LVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAASIGT 152 >gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha710] Length = 445 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNVDDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273 >gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP3-BS71] gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pneumoniae SP3-BS71] gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pneumoniae OXC141] Length = 446 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 23/220 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A II ITGS GKTTT M+ L++ + G + +IG P + +A+ D Sbjct: 106 AYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ E +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ L +K+ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQD----LTSKTEA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVVMAANE 267 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D T + LS F Sbjct: 268 IGVP----GSHNVENALATIAVAKLRGVDNQTIKETLSAF 303 >gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] Length = 300 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 48/284 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSIP 84 ++ I+ DSR+ F A G D H F +G LVVVN + + A++ + +P Sbjct: 23 IDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLSANVTQVVVP 82 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D L + LA + + +TG+ GKT+ M+ + ++K A +G+ Sbjct: 83 -----DTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGT 137 Query: 143 YNNHIG---------VPLTLA---RMPVDVDFGIFELGM---SH---LGEIRFLTHLVRP 184 I P T++ ++ VD G + + SH LG +R V Sbjct: 138 NGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRG----VEF 193 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSH 240 +A+ + + HL +E AK+ +F E L K + LN DDSF E L+ Sbjct: 194 DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLR---- 249 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + ++S+G + A F ++ LQG S + V Sbjct: 250 TVTPYEVFSYGIDEEAQFMAENIQES---------LQGVSFDFV 284 >gi|229032342|ref|ZP_04188315.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271] gi|228729122|gb|EEL80125.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H FS I ++ +A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFSDINDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893] gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893] Length = 481 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 152/367 (41%), Gaps = 43/367 (11%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ L + + T+ IG N G L + + Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLDPTF-VIGGKLNSAGTNAQLG-------GSRYLVA 173 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P I+V+T I H+ + G IE + + L G + Sbjct: 174 EADESDASFL-HLT-PVISVVTNIEADHMDTYGGDIERLKQTFVDFLHNLPFYGVAVMCV 231 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEV 283 DD F E++ S A I ++G + +AD++ + ++ V+ G ++V Sbjct: 232 DDGFVQEIIPRISRA-----IITYGIDNPDADYRAENIESDGLRTRFVVRRPGGRSDLDV 286 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339 G H QN L + + + D + L+ F G G+R++ + +G Sbjct: 287 ELKMPGRHNVQNALAAIAVATDEGVDDAAICRGLAGF---AGVGRRFQVYGDYSTRKGTV 343 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEV- 395 TLID+ Y +P ++A I P RR+ +L +L + F L+EV Sbjct: 344 TLIDD-YGHHPTEVEAVIRAARDAWPD---RRLVMLYQPHRYTRTRDLYEDFVRVLSEVD 399 Query: 396 ----LSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + +Y+ + G AL +L + S+ + E + + ++L DGD+++ Sbjct: 400 GLLLMDVYSAGEPAIPGADGRALCRSLRQRGSVEPLFVEENGEIEALLANTLQDGDLLIT 459 Query: 450 KSSNSCG 456 + + G Sbjct: 460 QGAGDIG 466 >gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] Length = 492 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 140/373 (37%), Gaps = 37/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM---VASIGSLSI 83 + I DSR + FF I+G DGH ++ A+ +GA +V + + I + + Sbjct: 16 IESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLRRYYQGIVYVQV 75 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P DVL LN++A K T I +TG+ GKT ++ L K +G Sbjct: 76 P-----DVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARVVARLLGRYLKM-GYVG 129 Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185 NN I T+ +M V + F L +S G V Sbjct: 130 --NNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRVDSVNFS 187 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGI 244 I V T H+ I+ + + ++F L++ G LN D+ F L L Sbjct: 188 IVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRFNHFLSMNYKDLSE 247 Query: 245 KT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I S+G AD R + + S ++ ++ + V I N L L + Sbjct: 248 HAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTLAILTTL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + A+ P EGR + + Q F ++D Y + + + + + Sbjct: 308 YALEMTPEEIVNAIKYIQPVEGRME--VVPVKQPFHIIVD--YCQHAHNFEEVFKFVYGV 363 Query: 364 SPHGEGRRIAVLG 376 G G IAV G Sbjct: 364 K--GNGHLIAVFG 374 >gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] Length = 504 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 31/265 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G+S DSR+ + +FA+ G H DGH F+ A+ GA V+ + S+ I Sbjct: 24 LISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGARAVIHQVPL--SLYHPEIAY 81 Query: 86 FGVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138 V + +++ +A A +R+ +I +TG+ GK++T L L+ +K + Sbjct: 82 LQVTNSRISMSPVAAAFYDHPSRV---LKVIGVTGTDGKSSTVSFLHQLLTGMGLKCGFL 138 Query: 139 CIGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------ 185 +N NH A + E G SH I +H + P Sbjct: 139 STVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGCSH-AVIESTSHGLSPKNNRLGD 197 Query: 186 ----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSH 240 AVIT I+ HL +E+ KA +F + G +N DD L + Sbjct: 198 ICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAVINIDDKNHNLFAGTAS 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ 265 + YS ++ AD++ R ++ Sbjct: 258 GCRSISFYSATGAQKADYRARGIEE 282 >gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] Length = 493 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 52/333 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++PV Sbjct: 25 VTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNVPVI 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 V++ A+ LA K +I +TG+ GKTT ++ ++ IG+ Sbjct: 80 YVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMY 139 Query: 144 --------------NNHIGVPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVR 183 + I TLA M D G+ + M LG + + + Sbjct: 140 RKIKDEKLPTANTTPDAITTQRTLAAM---RDAGVETVAMEVSSIALVLGRVWGIDY--- 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGT---IFLNYDDSF---FE 233 IAV T + HL + + AKA +F L GT LN DD FE Sbjct: 194 -DIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFE 252 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A +H L +FG +A + + S + ++ + G V IG Sbjct: 253 QYTA-AHVL------TFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNV 305 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 NML D IK+L +GR Sbjct: 306 YNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGR 338 >gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] Length = 501 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 155/404 (38%), Gaps = 61/404 (15%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 HD +Q ++ G + DSR +AP + F A G DG + A+ +GA Sbjct: 9 HDAVQWLRERVTGT--------LQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATA 60 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEM 125 +V V + G + + + A +A ++A+TG+ GKT+T Sbjct: 61 CLVEQTGVEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTNGKTSTAWW 120 Query: 126 LTIALSSIKKT-------YACIGSYNNHIGVPLTLA----------------RMPVDVDF 162 L AL+S+ K A +G+ +GVP L R D Sbjct: 121 LAGALNSLSKQELHAPTRCALVGTLG--MGVPPALESTGMTTPDPVRLQRAFRQYADQGL 178 Query: 163 GIFELGMSHLG--EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLE 218 G + S +G E R +R +A+ T HL + + AK +F+ GL+ Sbjct: 179 GACAIEASSIGLAESRLDGTPIR--VAIFTNFTQDHLDYHGSMADYWLAKRALFDWPGLQ 236 Query: 219 KTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--- 273 +N DD L A+ AL + +I + G ++ A + Q + +E Sbjct: 237 AA---VINVDDPAGAQLHAELTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQ 293 Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 V LQ + IG++ N+L L + + A++A S P GR +R Sbjct: 294 RVPLQTRV-------IGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRL-V 345 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 A Q L+ Y P ++ A+ L ++ G+ V G Sbjct: 346 APGQ---PLVAVDYAHTPDALDKALQALRPLAVERGGQLWCVFG 386 >gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] Length = 471 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 +++DSR A + F AI G DG +I A+ +G +V D VA S++ +PV Sbjct: 1 MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPV 60 Query: 86 FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + ++ L+ LA A LR ++ +TG+ GKTTT ++L ++ +T A Sbjct: 61 IYLRNLNQHLSTLAGQFYHQPGAALR----LVGVTGTNGKTTTSQLLAQWSQALGETSAV 116 Query: 140 IGSYNN 145 +G+ N Sbjct: 117 MGTVGN 122 >gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] Length = 490 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 147/373 (39%), Gaps = 48/373 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S S + + F KG +D H+ I ++KGA VVV ++ L P Sbjct: 25 ITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEKEI-----DLDFPHI 79 Query: 87 GVDDVLGALNKLA------------------VAARLRSKATIIAITGSVGKTTTKEMLTI 128 V D K+A + + I + S+G+ + +LT Sbjct: 80 QVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTTVMIYHMLTSLGEKGS--VLTT 137 Query: 129 ALSSIKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVR 183 A+ I + SY + I P L+ M + + G F L +S ++ VR Sbjct: 138 AVKRILEN-----SYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + + T I+ HL E AK +F+ L+ G LN +S + KS + Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--ESLADTFNRKSRKI- 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +FG SKNAD++L + E + ++ + V IG A N + + Sbjct: 250 -----TFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAAAAIAAL 304 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D +L F EGR + R A G ++D + +P +++ + + +I Sbjct: 305 HQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKI 362 Query: 364 SPHGEGRRIAVLG 376 S +GR I V G Sbjct: 363 S---QGRVIVVFG 372 >gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio proteoclasticus B316] gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio proteoclasticus B316] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 37/302 (12%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT ML+ I L + IG IG ++ G E + Sbjct: 116 VAVAGTHGKTTTTSMLSKILLEADTDPTLSIGGIFKDIGG---------NIRVGQSEYFV 166 Query: 170 SHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 + E FL+ P I++I+ I HL F +++I + + + L GT+ +N Sbjct: 167 TEACEYTNSFLSFF--PKISIISNIDADHLDFFKDLDDIRHSFRKFAQLLPADGTLVING 224 Query: 228 D-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVV 284 D D+ E+ + TI ++G + D+ + + S+ G+++++ Sbjct: 225 DIDNVEEITDSLPC-----TIITYGSRDSFDYYPTDITYNEQGNPSFTAHLPGGETLDIS 279 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G H N L ++ + ++ D + ALS F G +R+ G T+ID+ Sbjct: 280 LAVPGIHNVYNALASIAVANLFGISKDNIVAALSAFG---GTSRRFEYKGEIGGVTIIDD 336 Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P +KA ++ PH R A+L + + LS + H+ LA++ Sbjct: 337 -YAHHPTEIKATLTAAQNYPHNKIWCVFQPHTYTRTKALLDEFADA--LSLADHVVLADI 393 Query: 396 LS 397 + Sbjct: 394 YA 395 >gi|229175402|ref|ZP_04302917.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3] gi|228608234|gb|EEK65541.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H FS I ++ +A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFSDINDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis FAM18] gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis FAM18] Length = 445 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATKDIPLQG 273 >gi|229823042|ref|ZP_04449111.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271] gi|229787481|gb|EEP23595.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271] Length = 443 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/331 (22%), Positives = 129/331 (38%), Gaps = 65/331 (19%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L +P++ LG L K T IA++G GKT+T +L L + Sbjct: 85 ELGLPIYRYHHFLGKLIK---------GYTSIAVSGCHGKTSTTGLLAHTLKHLAPLSYL 135 Query: 140 IGSYN-------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 IG N+ G+ R FL++ P A+IT + Sbjct: 136 IGDGTGYGQESANYFGLEACEYRR-------------------HFLSY--EPDYAIITNV 174 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ IE++ SA F G + T + +D++ L+A +Y +G Sbjct: 175 DFDHPDYFTSIEDVFSAFTS-FAG-QTTKAVIACGEDAYLRQLEAPV------PVYYYGF 226 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD--- 309 N+ ++ + S +V +GK + H + + N+L L ++++LT + Sbjct: 227 DSNSTVYATNIERTQDGSDFDVTFEGKFLGRFH--VPTYGKHNILNALAVITVLTLEGFP 284 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 D + L+ F G +R+ G T+ID+ Y +P+ +KA I Q Sbjct: 285 ADAIAQNLATF---TGVKRRFSVK-TVGDLTIIDD-YAHHPSEIKATIDATKQRYPDKRC 339 Query: 363 ---ISPHGEGRRIAVLGDMCEMGELSQSFHI 390 PH R +A+L + E L+ ++ Sbjct: 340 IAVFQPHTFSRTVALLNEFAESLNLADQVYL 370 >gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella termitidis ATCC 33386] gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella termitidis ATCC 33386] Length = 445 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 22/278 (7%) Query: 92 LGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 + ++++ +A R K T II+ITG+ GKTTT + L G+ Sbjct: 74 ISVISEIDLAYRYMDKKTKIISITGTNGKTTTATKIYELLKEAGFDAELAGNAGFSFAKL 133 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 ++ + P D+ + EL L V HIA I + P HL+ ++ +++ K Sbjct: 134 VSDGKEP---DYVVLELSSYQLEN----DPEVHSHIAGIINLTPDHLTRYNSLDDYYKTK 186 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI------KTIYSFGKSKNADFQLRKWK 264 IF+ + +N DD E+L+ S I K I+ G+ K FQ Sbjct: 187 FNIFDHQNENDYALINLDDK--EILRIISENKDIDDKIKAKRIFLSGEKKADVFQKDGMI 244 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + L S + G H +N+L + + IL D++ LS P E Sbjct: 245 NVTDHNSQLIPLMKTSELSLK---GKHNLENILFIISVGMILNVDIEVMKSFLSSTKPLE 301 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 R + + +G I++S N S AI + Sbjct: 302 HRLENF---FEKGKTVFINDSKGTNSESTIKAIEAFGK 336 >gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622] gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622] Length = 472 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 53/395 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ IPV ++L L +L A +A+ GS GKTTT M+ L Sbjct: 88 NPEVVAA-RQRKIPVIPRAEMLAELMRLKYA---------VAVAGSHGKTTTTSMVATVL 137 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 S+ A +G N + L + M V+ D E S L HL P I Sbjct: 138 SAAGLDPTAVVGGKVNVLDSNAKLGKSELMVVEAD----ESDGSFL-------HL-HPSI 185 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++T I P H+ ++ ++ + SA E + G L D+ + L + K Sbjct: 186 AIVTNIDPEHMDHYGDLDTLQSAFVEFCNRVPFYGLNVLCLDNPNVQALLPRIE----KR 241 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSI 305 ++G S AD++L + + + +S+ E +G H A N L + + Sbjct: 242 FVTYGSSHMADYRLENIQLDGFTTRFNAYRREESLGEFRVRMVGAHNAFNALAVIAVAEE 301 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358 + ++T ++L+ F G +R+ T++D+ Y +P + A ++ Sbjct: 302 MDIPLETVRESLAEFG---GVQRRFTVRGEAQGITVVDD-YGHHPTEVLATLAGARRAFG 357 Query: 359 --VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALK 415 V+ PH R D+ M E + SF+ D+ V S+Y + G AL Sbjct: 358 RRVVVAFQPH----RYTRTHDL--MKEFTTSFNDSDVLFVTSVYAAGEERIHGATGDALA 411 Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448 DA+ H V + E L + L +GD+V+ Sbjct: 412 DAVRAHGHRDVTFVEKRTDLPAALLPRLREGDLVL 446 >gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] Length = 499 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 25/219 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSRS+ + F A G DG FI A+++GA V+ + S+P V D+ Sbjct: 22 DSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHGFKWNPTWSVPNLAVSDLR 81 Query: 93 GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 +A V + K ++ ITG+ GKT+ L + ++ + A IG+ N G P Sbjct: 82 HQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSALIGTLGN--GFP 139 Query: 151 LTL---ARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 L A D + E+ L + R + V +A++T + Sbjct: 140 EALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRV--NGVHFDVALLTNL 197 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 HL ++ A+AK +F+ + LN DD F Sbjct: 198 TRDHLDFHGDMQSYAAAKKRLFDWASLKYAV-LNLDDMF 235 >gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium HTCC5015] gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium HTCC5015] Length = 468 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 30/294 (10%) Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +++P ++V+T I P HL+ + G E++ E L G + DD + + Sbjct: 169 ILQPVMSVVTNIEPDHLATYGGSFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPR- 227 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGI-GYHMAQNML 297 + +T+ ++G + AD Q + S +V L GK ++ + + G H QN L Sbjct: 228 --VTCQTL-TYGIQEGADIQAINLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNAL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASM 353 L I L D+ AL F G G+R++ G TL+D+ Y +P+ M Sbjct: 285 AALAIAHELGVSGDSISSALQSFG---GIGRRFQLLGDIQCGNGSVTLVDD-YGHHPSEM 340 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410 A + P RR+ V+ +Q D A VLS + ++ V+ +G Sbjct: 341 SATLRAARNAWPD---RRL-VVAFQPHRYSRTQDLFEDFASVLSAADALCLTEVYAAGEP 396 Query: 411 VLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + D + V + E+++ L +Q L +GDV++ + S G Sbjct: 397 AVPGADGRSLAAAVRARGQVNPVFVESVEALPEVLQGVLEEGDVLLTLGAGSIG 450 >gi|73662332|ref|YP_301113.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|109892744|sp|Q49YH1|MURC_STAS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|72494847|dbj|BAE18168.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 437 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 42/288 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGLGIPAS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F ++++ +A E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDVDDVFNAFQEMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD+ ++A +Y +G S D + + + +V +G+ + Sbjct: 201 IAWGDDTHLRKIEADV------PVYYYGFSNKDDVYADNLEISEKGTKFDVYFKGEYFDT 254 Query: 284 -VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + + ++D +AL F G KR G L+ Sbjct: 255 FLSPQFGDHNILNALSVITISYLESLNIDNIKEALETF----GGVKRRFNETKVGNQVLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCE 380 D+ Y +P + A I V++ PH R A LG+ E Sbjct: 311 DD-YAHHPREISATIETARKKYPNKDVIAVFQPHTFSRTQAFLGEFAE 357 >gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 473 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 6/186 (3%) Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP ++++T I HL+ + IEE+ AE G + +G+I + DD + + A Sbjct: 181 RPFVSILTNIDVDHLNTYGTIEELVEGFAEFLRGTDPSGSIIVCADDERAAAVGKRLAAE 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301 G +T+ S+G AD ++ + + + +G+ + + G H+A N L Sbjct: 241 G-RTVVSYGTDAEADLRIGEITIDASGARYTASYRGRDLGSFFVTVPGRHLALNSAAALL 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L DV+ L+ F G +R+ + DE Y +P +M AA+S L Sbjct: 300 AGLLLDVDVEELRTGLAAF---TGVRRRFELTGTVAGVRVYDE-YAYHPTAMNAALSTLK 355 Query: 362 QISPHG 367 I+ G Sbjct: 356 TIAEPG 361 >gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] Length = 512 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 102/407 (25%), Positives = 169/407 (41%), Gaps = 60/407 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSI 83 V +S DSR ++ FF KG ++ +++ A+++GA + V TD + + S Sbjct: 39 VTDLSYDSRKVSDGTLFFC-KGLKFNP-EYLASAIKEGATAAISELVYTDKLDQ-EAQST 95 Query: 84 PVFGVDDVLGALNKLAVAAR-----LRSKATIIAITGSVGKTT----TKEMLTIALSSIK 134 P V DV A+ AV AR K +I TG+ GKTT T+ +L + Sbjct: 96 PQIIVTDVQKAM---AVIARHFYGCPDEKLELIGFTGTKGKTTSVYFTRHILAHEFGPVV 152 Query: 135 KTYA----CIGSYN---NHIGVP--LTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184 ++ C+ N H+ P L L RM + VD G+ L M + + + Sbjct: 153 GQFSSIDECVDGKNFIEAHLTTPESLDLFRMMKEAVDNGMKYLAMEVSSQAYKKSRVYGL 212 Query: 185 H--IAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 H I V I+P H+S ++ K++I + + T+ LN ++ELL K+H Sbjct: 213 HFNIGVFLNISPDHISLVEHPTFDDYLWCKSQI---IVNSDTVILNRYMDYYELLAQKAH 269 Query: 241 ALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-----GYHMAQ 294 LG K I +FG + +AD++ + + +V ++ V G+ Sbjct: 270 ELGKKLI-TFGSDESDADYRY----HGKDHGYFDVSTHNDNLPEVTGEFRVMIPGHFNYS 324 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGR--GKRYRCALNQGFFTLIDESYNANPAS 352 N L + + + L D + L KE + G+ N G +D Y N S Sbjct: 325 NALAAITVSAQLKDDTSDFAQGL-----KETKVPGRMEFLKNNAGMVACVD--YAHNYLS 377 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + + + P +GR I V+G G ++S D+ LS Y Sbjct: 378 LSESFKFMKHEYP--DGRLIVVIG---AAGGKAESRRKDVGRALSEY 419 >gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] Length = 489 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 152/394 (38%), Gaps = 58/394 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F + G ++ HDFI ++KGA +V++ D+ G I V L Sbjct: 28 DSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKGAHAIVISQDVSLKEGMTYIRVKDTRIAL 87 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---- 148 AL A + ++ ITG+ GKT++ M+ L K IG+ IG Sbjct: 88 -ALLSCAYFNYPSKELKVVGITGTKGKTSSSLMIKSILEHAGKKVGIIGTNGTFIGDIHE 146 Query: 149 -----VPLTLARMPV-------DVDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVITT 191 P + + D ++ + E L M+ + I F V T Sbjct: 147 PTANTTPESYELQRIMRKMVEHDCEYCVMEVSSQALKMNRVAGIEF-------DYGVFTN 199 Query: 192 IAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 I+P H+ + E + K +F+ + N DD FE + + Sbjct: 200 ISPDHIGPNEHKDFAEYMACKKHLFDFCQ---VGLFNKDDEHFEEFTKDVPC----KVLT 252 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI---V 303 + K++D + + +E + + K + G A N L+ + I + Sbjct: 253 YSIEKDSDLKALHIELYNENGELGITFDTKGLINASFKASMPGKFNAYNALVAIMICYLI 312 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + T D+ + + V GRG+ + + + LID Y N S ++ IS + Q Sbjct: 313 DVPTKDIQNTLPQVHVL----GRGQVMHVSPD--YSVLID--YAHNGVSFESIISTVEQY 364 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +P+ + I V G G+ S++ + EV++ Sbjct: 365 NPN---KLIVVYG---SGGKRSKTRRYESGEVVA 392 >gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 495 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 142/369 (38%), Gaps = 30/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 V+G+ +DSR + P +AF AI G G F A Q GA ++ + +I Sbjct: 22 VSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPADAIA 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V G+ LGA+ L T++ +TG+ GKT+T ++L A IG+ Sbjct: 82 VPGLRSRLGAMADL-FHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLRGGSIGTLG 140 Query: 145 N--HIGVPLTLARMPVDVDFGIFELGMSHLG----EIRFLTHL--------VRPHIAVIT 190 H V T P+ + G+ G + +H V +AV T Sbjct: 141 AGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGVHYDVAVFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTI 247 + HL + AKA +F EGL + LN DD F +L + + + + + Sbjct: 201 NLTRDHLDYHGDMASYGEAKARLFLREGLR---SAVLNLDDEFGRVLAGRLAEGVRLVGV 257 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S G+ + A Q R + + E+ +S V +G N+L G++ L Sbjct: 258 SSRGQ-EGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVLHALG 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V LS P GR R G L+ Y P +++ A L+ + H Sbjct: 317 DSVACVAAILSRLQPVAGRMNRLG---GDGERPLVVVDYAHTPDALEQA---LASLRAHA 370 Query: 368 EGRRIAVLG 376 R V G Sbjct: 371 GARLTCVFG 379 >gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris HaA2] gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 468 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 118/286 (41%), Gaps = 30/286 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156 LA RL+S +AI G+ GKTTT M+ L + I G N G T AR+ Sbjct: 100 LAELMRLKS---CVAIAGTHGKTTTTSMVAALLDAGDFDPTVINGGIINAYG---TNARL 153 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ + E S + FL + +A++T + P HL +F + + A E Sbjct: 154 GAG-DWMVVEADES---DGTFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVEN 207 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + D + L K + + I ++G++ AD +L + K S +V Sbjct: 208 VPFYGFAVMCIDHPVVQALVGK---IEDRRIITYGENPQADARLLELKPSGSGSTFKVAF 264 Query: 277 QGKSMEVVHH-------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + H G H A N + + L DT KAL+ F G +R Sbjct: 265 RDRKAGTAHEIAELMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRR 321 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + + T+ID+ Y +P + A + Q + +GR IAV+ Sbjct: 322 FTKTGDWNGVTIIDD-YGHHPVEIAAVLKAARQST---DGRVIAVV 363 >gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 472 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 55/325 (16%) Query: 56 FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 F HA +GA +VVV N ++VA+ L IPV ++L L R R Sbjct: 57 FFGHAASNVEGASVVVVSTAISQENPELVAA-RELRIPVVRRAEMLAEL------MRYRH 109 Query: 107 KATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVD 159 IAI G+ GKTTT ++T S + T+ G N +G L Sbjct: 110 G---IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGCSRYL------ 160 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 + + + FL HL +P + V+T I H+ + G E + + L Sbjct: 161 -------IAEADESDASFL-HL-QPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLP 211 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G + DD L + + + ++G S++AD +L ++QC +Q + + + Sbjct: 212 FYGLAVMCIDDPVVRELLPRVG----RPMLTYGFSEDADVRLMDYQQCGQQGFFTIVRKD 267 Query: 279 K-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCA 333 K ++V + G H A N + + + D D I+AL+ F +G G+R+ Sbjct: 268 KPELKVTLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEF---QGTGRRFDHLGEFE 324 Query: 334 LNQGFFTLIDESYNANPASMKAAIS 358 G L+D+ Y +P+ + I Sbjct: 325 TGNGTAMLVDD-YGHHPSEVDVTIQ 348 >gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9301] gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9301] Length = 511 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 30/247 (12%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG F + A++ GA ++ + Sbjct: 13 VGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGSA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS + ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173 L K A G+ +N G A + + +F I E+ + Sbjct: 133 LKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230 + R A+ T + HL S +E K ++F +EK G LN+DD Sbjct: 193 QKRI--SGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVLNHDDP 250 Query: 231 FFELLKA 237 + L + Sbjct: 251 WISKLSS 257 >gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] Length = 507 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 37/317 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P + F A+ G DG ++ AV +GA VV +GS +P F Sbjct: 24 VTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSRGAVAVVSEK----PVGSSQVPFF 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL +A R + T++ +TG+ GKTTT +L ++ + IG+ Sbjct: 80 KVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTTTTYLLEAISAAAYASTGVIGTLG 139 Query: 145 -----------NHIGVPLTLARMPVD-VDFGIFELGM--SHLGEIRFLTHLVRPHIAVIT 190 N PL L R+ + VD G+ + M S ++ H + A T Sbjct: 140 YKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVMEVSSHALVQERVHGLTFKAAAFT 199 Query: 191 TIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSF----FELLKAKSHALGIK 245 + HL IEE AK +F E L TG +N DD++ + L+ + Sbjct: 200 NLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVNGDDTYASRIYNELRGQKRMAWKF 259 Query: 246 TIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302 + G+ AD F L+ K + ++ ++ + +G H +N+L G+ Sbjct: 260 SRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRL-------VGPHNLENILAATGVA 312 Query: 303 --VSILTADVDTAIKAL 317 I DV T I+ + Sbjct: 313 LGAGIARRDVQTGIERM 329 >gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis DSM 12885] gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis DSM 12885] Length = 479 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 10/202 (4%) Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF-EL 234 FL +L P IAV+T + P HL ++ G ++ A A + G + D +L Sbjct: 178 FLRYL--PEIAVVTNVEPEHLDHYGGDFAQLLQAFARFLRNVRPGGLVVACGDHPVLRQL 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMA 293 L ++ A G++ + +++++D + R + E + V G+ + V + G H Sbjct: 236 LADRTPAPGVRVVRYGMEAEDSDLRARDVQAGPEGTRFTVWQGGRPLGEVRLAVPGLHNV 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + L A AL+ FH G +R++ N+ ++D+ Y +P + Sbjct: 296 LNALAAVAVGLELRVPFAAAAAALASFH---GAKRRFQVIYNRDGILVVDD-YAHHPTEI 351 Query: 354 KAAISVLSQISPHGEGRRIAVL 375 +A + Q G GR IAV Sbjct: 352 RATLRAARQRQGEG-GRVIAVF 372 >gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] Length = 561 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 19/230 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF A GA V+ + + +PV Sbjct: 81 VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAAVLTDPAGADRAAATGLPVL 140 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 ++ + +LA + I ITG+ GKTTT ++ L + + +G+ Sbjct: 141 VTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTVYLMEGGLRAAGRATGLVGTVE 200 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H +AV Sbjct: 201 TRIGEERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 259 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++P H+ SG+E+ AKA++F ++ +N DD++ L A++ Sbjct: 260 NNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRRGVVNLDDAYGRRLAAEA 308 >gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium sinus F0268] gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium sinus F0268] Length = 456 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 29/233 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-I 164 SK + A+TG+ GKTTT ++ L S +G +IG P T + + + Sbjct: 105 SKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVG----NIGNPFTAEALETEEQSATV 160 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ L I P+++ IT I P HL ++ + K I E E+ +I Sbjct: 161 CEVSSFQLETIVDF----HPNVSAITNITPDHLDRHKTMKNYIAVKESIAENQEEEDSIV 216 Query: 225 LNYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRK----------WKQCSEQSWME 273 LNY D EL K K +L K ++ + + D + ++ +K+ ++ + Sbjct: 217 LNYMDP--ELRKFGKKRSLKPKVLWFSSEEEPKDTKEKESLFLRGDTFYYKKEDKEEKL- 273 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 K + H +G H +N+L +G+ + +D IK F P E R Sbjct: 274 --FTTKDV----HLLGKHNYENILCAVGVGLKMGVPMDKIIKVCKKFKPVEHR 320 >gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 490 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 47/365 (12%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 GAG+VV+ N + A+I + IP+ ++L L +RSK I AI+G Sbjct: 71 NGAGIVVISSAIKHNNPEYQAAILA-KIPIISRAEMLAEL--------MRSKVAI-AISG 120 Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 S GKTTT ++ + + T G NN T A + D D+ I E S Sbjct: 121 SHGKTTTTALIACIFEACGLHPTVITGGIMNNR----ATNAYLG-DGDYFIAEADESDAT 175 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I+ + IAVIT I HL + + + SA + L G DD + Sbjct: 176 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 230 Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285 L AK + + I ++G SKNA Q + S +V+++ + +V Sbjct: 231 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 287 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N L + I L D++ F +G +R+ T+ID+ Sbjct: 288 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 343 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403 Y +PA + A I I+ +GR IAV + +L F V LY IS Sbjct: 344 YAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 402 Query: 404 VWLSG 408 ++ +G Sbjct: 403 IYDAG 407 >gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri DSM 4166] Length = 487 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 70/389 (17%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82 + +++DSR + + F A+ G +DG D + A+ +GA V + D + ++ Sbjct: 17 LIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAAVM 76 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 +PV + G L+ A+A R + + ++ +TG+ GKT+ +++ AL + + Sbjct: 77 VPVH---HLAGQLS--AIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCG 131 Query: 139 CIGSYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRF 177 IG+ + IGV TLA++ V ++ L + + F Sbjct: 132 IIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEF 191 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +AV T ++ HL +E +AKA +F G+ +N DD F L Sbjct: 192 -------DVAVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAG 243 Query: 238 K-------SHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + S++L + Y + D R E+S L Sbjct: 244 EERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL----------- 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N+L +G + + +D + L GR +R L G L+ Y Sbjct: 293 -GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQR----LGGGDRPLVVVDYA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ VL+ + PH GR + + G Sbjct: 348 HTPDALE---KVLTALRPHARGRLLCLFG 373 >gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum SV96] gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum SV96] Length = 480 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 152/366 (41%), Gaps = 42/366 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + +A + T+ IG N G L G + + Sbjct: 119 IAVAGTHGKTTTTSLTASILAEGGLDPTF-VIGGRLNSAGSNAKLG-------LGHYLVA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL ++P +A++T I H++ + G + + E L G + Sbjct: 171 EADESDASFL--YLQPMMAIVTNIDQDHMATYEGSYQRLKDTFKEFLHHLPFYGLAVMCL 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVH 285 DD E ++A + K + ++G ++AD + KQ + +V +G ++V Sbjct: 229 DD---EGVRAVLPEIS-KPVTTYGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTL 284 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341 + G+H N L + + + L IK+L F +G G+R++ + +G TL Sbjct: 285 NMPGWHNMLNALAAISVATKLAVGDAAIIKSLGAF---KGIGRRFQLNGDLPMGEGKLTL 341 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D+ Y +P + A + L Q P RR ++ F D +VLS ++ Sbjct: 342 VDD-YGHHPREIAATLEALRQAWPD---RRSVIVFQPHRYTRTRDLFE-DFVQVLSTVDV 396 Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 V+ +G + D AL R+I V + E + L + ++ DV++ Sbjct: 397 LILMDVYAAGETAIPGADGRALSRAIRVRGQVDPVFVENWEELPQILAGIVLADDVILTM 456 Query: 451 SSNSCG 456 + + G Sbjct: 457 GAGNVG 462 >gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 484 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 38/387 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR F A++G H DGH F+ A+Q+G L++V +M A S + Sbjct: 24 VTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQGCTLIMVE-EMPAE-KSEGVTYM 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL A + ++ +TG+ GKTT +L +++ + + Sbjct: 82 MVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQ 141 Query: 145 NHIG---VPLT-----------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N IG +P T L R VD D+ E+ + + R +R + Sbjct: 142 NQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFMEVSSHAVVQQRIAG--LRFAGGI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + I HL + AK + F+ L++ N D+ ++ + A Sbjct: 200 FSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNGDEKNGSVMLQNTFAHK----K 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++G ADF+ + + S M + ++G EV +G A N+L G +L Sbjct: 256 TYGLKGVADFKAKIIE--SHFDGMLLNIEGH--EVWVKLVGEFNAYNILAVYGAAILLEQ 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + ALS EGR + G ++D Y P ++ +S ++ + E Sbjct: 312 ETVKVLTALSQITGAEGRFEAITS--KNGVIGIVD--YAHTPDAVANVLSTINNLRKK-E 366 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEV 395 + I VLG C G+ ++ ++AEV Sbjct: 367 QQIITVLG--CG-GDRDKTKRPEMAEV 390 >gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC 33656] gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC 33656] Length = 459 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 39/354 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M++ L + + + I V L+ + ++ G E +S Sbjct: 114 IAVAGTHGKTTTTSMISEILLAAQT--------DPTISVGGILSSIHGNLRVGDSEYFIS 165 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 E RP ++I I HL F I +I + E G +N + Sbjct: 166 EACEYTNSFLNFRPRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID 225 Query: 231 FFELLKAKSHALGI-KTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVH 285 +E + A G+ + I ++G DF K C+ + M QG + V Sbjct: 226 RYEEIVA-----GLPQKIITYGFDSKYDFYPENITYDDKACASFTAMR---QGSPLFDVK 277 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + G H N L + + + L D ++ + L F G +R++ T+ID+ Sbjct: 278 LSVPGAHNVSNALAAIALSTTLGLDEESILTGLDKFG---GADRRFQYKGKVNGVTIIDD 334 Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P ++A ++ + PH R A L D ++ LS + + LA++ Sbjct: 335 -YAHHPTEIRATLTAAQKYPHDRLVLCFQPHTYSRTKAFLNDFADV--LSMADVVVLADI 391 Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +S +L L L + ++ HY + + + F+ + V+GD+++ Sbjct: 392 YAAREQNTYGISSKDILDL--LLEKGVNAHYFPSFEEIEKFLSENCVNGDLLIT 443 >gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 115/272 (42%), Gaps = 38/272 (13%) Query: 19 IGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +GI G +N +++DSR+ F AIKG DG +I A+ GA V+ D Sbjct: 8 LGIDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQ 67 Query: 77 SIGSL----SIPVFGVDDVLGALNKLA-VAARLRSK-ATIIAITGSVGKTTTKEMLTIAL 130 + IP+ + L++LA V + SK T++ +TG+ GKTTT ++L Sbjct: 68 QHLQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWT 127 Query: 131 SSIKKTYACIGSYNNHI-----------GVPLTLARMPVD-----VDFGIFELGMSHLGE 174 + T A +G+ N + G + + D DF E+ SH G Sbjct: 128 QLLGHTGAVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVS-SH-GL 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ V AV T ++ HL +E A+AK +F L+ I ++ DD + Sbjct: 186 VQHRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQI-IDADDPVGAV 244 Query: 235 LKAK-SHALGIKTIYSFGKSKNADF--QLRKW 263 A+ HA+ + S ADF Q W Sbjct: 245 WLAEMPHAVAV--------SAKADFLPQQANW 268 >gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str. Boryong] gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str. Boryong] Length = 502 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 47/365 (12%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 GAG+VV+ N + A+I + IP+ ++L L +RSK I AI+G Sbjct: 83 NGAGIVVISSAIKHNNPEYQAAILA-KIPIISRAEMLAEL--------MRSKVAI-AISG 132 Query: 116 SVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 S GKTTT ++ + + T G NN T A + D D+ I E S Sbjct: 133 SHGKTTTTALIACIFEACGLHPTVITGGIMNNR----ATNAYLG-DGDYFIAEADESDAT 187 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I+ + IAVIT I HL + + + SA + L G DD + Sbjct: 188 FIK-----IPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQ 242 Query: 234 LLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVVH 285 L AK + + I ++G SKNA Q + S +V+++ + +V Sbjct: 243 NLIAK---ITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTL 299 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N L + I L D++ F +G +R+ T+ID+ Sbjct: 300 PALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNF---KGIARRFTKIGEYNNITVIDD- 355 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSFHIDLAEVLSLYNISH 403 Y +PA + A I I+ +GR IAV + +L F V LY IS Sbjct: 356 YAHHPAEIIATIDTARCIADKQQGRVIAVFQPHRYSRLKQLFSEFTHCFQRVDQLY-ISQ 414 Query: 404 VWLSG 408 ++ +G Sbjct: 415 IYDAG 419 >gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] Length = 503 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 157/385 (40%), Gaps = 59/385 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+GI+IDSR + P F A+ G G F+ A++ GA +V + A IG Sbjct: 28 VSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGATAIVTDPAGAAIIG------- 80 Query: 87 GVDDVLGALNKLAVAARLR-------------SKATIIAITGSVGKTTTKEMLTIALSSI 133 D ++G L V +R A + A+TG+ GKT+ L Sbjct: 81 --DTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTSVTSFL------- 131 Query: 134 KKTYACIGSYNNHIGV-----------------PLTLARMPVD-VDFGIFELGM---SHL 172 ++ + G +IG LTL R+ + + G+ M SH Sbjct: 132 RQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAMEASSHG 191 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSF 231 E R L ++ +A T + HL + +AKA +F L + G +N DD Sbjct: 192 IEQRRLEGVML-SVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINIDDPK 250 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + + G + I GK+ A +L + + + + +G++ + IG Sbjct: 251 GADIARVAEDRG-QEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLIGGF 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 A+N+L+ G+ +I + D D A + H RG R + A +G + + P Sbjct: 310 QAENVLLAAGL-AIASGD-DPAHVFAAFPHLTTVRG-RMQLAARRGNGASVFVDFAHTPD 366 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 +++ +VL I PH GR +A++G Sbjct: 367 AIE---TVLQAIRPHVMGRVVAIVG 388 >gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] Length = 483 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR + + F AI+G + DGH FI A++ GA +++ + + S I V Sbjct: 23 VNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENGAKVIICSKNTEFYENSTYIKVE 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 L A+ ++ +I ITG+ GKTT+ M+ L IG+ N Sbjct: 83 NTRKAL-AIMASNFYGNPSNEIKLIGITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANF 141 Query: 147 IG 148 IG Sbjct: 142 IG 143 >gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] Length = 564 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 22/243 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ P + + A+ G G DF A GA V+ + + + +PV Sbjct: 83 ITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAAVLTDPEGAERAAATGLPVL 142 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D + +LA R + + ITG+ GKTTT ++ L + +T +G+ Sbjct: 143 AVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLRAAGRTTGLVGTVE 202 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H +AV Sbjct: 203 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 261 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 ++P H+ +G+E+ AKA++F E + G + N DD + L AK ++ + T Sbjct: 262 NNLSPEHMEFHTGMEDYFQAKAQLFTERRARLGVV--NLDDEYGRRL-AKEASIPVVTFS 318 Query: 249 SFG 251 + G Sbjct: 319 AAG 321 >gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri A1501] gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas stutzeri A1501] Length = 487 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 70/389 (17%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82 + +++DSR + + F A+ G +DG D + A+ +GA V + D + ++ Sbjct: 17 LIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQALTGAAVM 76 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 +PV + G L+ A+A R + + ++ +TG+ GKT+ +++ AL + + Sbjct: 77 VPVH---HLAGQLS--AIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGEPCG 131 Query: 139 CIGSYN---------------NHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRF 177 IG+ + IGV TLA++ V ++ L + + F Sbjct: 132 IIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQGRVAALEF 191 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +AV T ++ HL +E +AKA +F G+ +N DD F L Sbjct: 192 -------DVAVFTNLSRDHLDYHGTMEAYGAAKARLF-GVPGLSCRVINLDDGFGRALAG 243 Query: 238 K-------SHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + S++L + Y + D R E+S L Sbjct: 244 EERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL----------- 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N+L +G + + +D + L GR +R L G L+ Y Sbjct: 293 -GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQR----LGGGDRPLVVVDYA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ VL+ + PH GR + + G Sbjct: 348 HTPDALE---KVLTALRPHARGRLLCLFG 373 >gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis MC58] gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis MC58] gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis H44/76] gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis CU385] gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis H44/76] Length = 445 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 30/180 (16%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRDD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD+F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 >gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] Length = 492 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 107/410 (26%), Positives = 170/410 (41%), Gaps = 66/410 (16%) Query: 23 PQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 PQ V GI+ DSR + P F AIKG DGH FI +A + GA Sbjct: 23 PQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGA---TAVVVEREVEVPA 79 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V V D AL LA K T++ +TG+ GKTTT ++ + Sbjct: 80 DLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKTTTTHLIAAIWRQVGLKPGV 139 Query: 140 IGSYNNHIG---VPLT------------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183 +G+ +N IG +P+T +A M DV E+ L R V+ Sbjct: 140 VGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVAMEVSSHALALNRVAG--VK 197 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV T I HL +E+ +AKA++FE K I N DD E L S Sbjct: 198 YDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDIKYAVI--NADDQAAEQLFKISRG-- 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSE-----------QSWMEVQLQGKSMEVVHHGIGYHM 292 +Y++G NAD + + + + + +E++L G+ V + Y + Sbjct: 254 --KVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKLTGR-FNVYNSLAAYTV 310 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANP 350 M LG + DV A++ ++ G R+ ++QG F ++D Y P Sbjct: 311 G----MVLGYNGM---DVKAALEGVT------GVAGRFEL-VDQGQDFAVVVD--YAHTP 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++ ++ QI+ +GR I V G C G+ ++ + E+ + Y+ Sbjct: 355 DGLENILTTARQIT---KGRLITVFG--CG-GDRDRTKRPIMGEIAARYS 398 >gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. M143] gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus sp. M143] Length = 450 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 19/220 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S+A I+ ITGS GKTTT M+ L++ + G + +IG P + +A+ Sbjct: 106 AYLISEAPIVGITGSNGKTTTTTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L ++ P IAVIT + P H+ EE +AK I + Sbjct: 162 DTLVMELSSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAA 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + LN++ + L ++ A T+ F + D + Q + EV + Sbjct: 218 DFLVLNFNQDLAKELATRTQA----TVVPFSTLEKVDGAYLEDGQLYFRG--EVIMAADE 271 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + V G H +N L T+ + + D + LS F Sbjct: 272 IGVP----GSHNVENALATIAVAKLRGIDNQIIKETLSAF 307 >gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha14] gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha14] Length = 445 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLAR 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 497 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/302 (20%), Positives = 110/302 (36%), Gaps = 71/302 (23%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + + DSR + P F A+ G + DGHDF AVQ+GA +VV + A Sbjct: 17 PAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVAAPA---H 73 Query: 83 IPVFGVDDVLGALNKLA----------------------------VAARLRSKATIIAIT 114 + V D AL +LA V A L + ++ +T Sbjct: 74 VAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQGHVVGLT 133 Query: 115 GSV-----GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 G+V G+ + T S +++ + + V ++ L M Sbjct: 134 GTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAV----------MEASSQGLDM 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIF 224 + + ++ F + + T + HL AKA++F L + G Sbjct: 184 NRVDDVEF-------DLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAV 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLR----KWKQCSEQSWMEVQ 275 LN DD E ++ + +Y++G + AD +L + + C+ Q + V Sbjct: 237 LNADDPASEYYRSVTEV----PVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVS 292 Query: 276 LQ 277 L+ Sbjct: 293 LR 294 >gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus vortex V453] gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus vortex V453] Length = 479 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165 +A II ITGS GKTTT + L S + G +IG PL+ A D + + Sbjct: 111 EAPIIGITGSNGKTTTTTWVGKLLESAGLSPIVAG----NIGTPLSEAAAEATPDNWMVV 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T RP IA + IA HL G+++ S+KA +F T L Sbjct: 167 ELSSFQLKG----TEEFRPRIACLLNIAETHLDYHGGMDDYISSKARLFVNQTADDTAVL 222 Query: 226 NYDD 229 N+DD Sbjct: 223 NWDD 226 >gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium thermocellum JW20] gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium thermocellum JW20] Length = 466 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIF 165 A I A+TGS GKTTT ++ L ++ Y C +IG+PL L+++ D D + Sbjct: 117 AEIFAVTGSDGKTTTTTLIYNMLK--EQGYKCW--LGGNIGIPL-LSKIEEIKDTDKVVL 171 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T P++AV+T ++P HL +EE AK IF + L Sbjct: 172 ELSSFQLH-----TMTKSPNVAVVTNVSPNHLDVHKSMEEYVFAKKNIFRYQSAEDRLVL 226 Query: 226 NYDDS 230 N+D+ Sbjct: 227 NFDND 231 >gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] Length = 515 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 162/395 (41%), Gaps = 35/395 (8%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL +LL A Q G+ + V GI+ DSR + P + + A+ G G +F A Sbjct: 10 RPLLGLVELLSA-QADGPGLA-KVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAA 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGK 119 GA + + + +PV DDV L + A V ++I +TG+ GK Sbjct: 68 AAGAVAIWTDPAGRHRAAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGK 127 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSHLG--- 173 TTT +L L + A IG+ IG +P +L P D M +G Sbjct: 128 TTTVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLT-TPEATDLHAIFAKMREVGVGA 186 Query: 174 -EIRFLTHLVRP--------HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTI 223 + +H + +AV T ++ HL + + + +AKA++F + G + Sbjct: 187 AAMEVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVV 246 Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSM 281 N DD + EL + L T +S +AD++ + ++ S V G Sbjct: 247 --NVDDGYGRELTRIAQVPL---TTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEA 301 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G N L IV+++ A + + A V G+ Q F L Sbjct: 302 DVSIQLPGPFNVANALAA--IVALVEAGLPLQVAAAGVGTLTGVPGRLEPIDEGQDFTAL 359 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y+ P +++A ++ L +++ GR I VLG Sbjct: 360 VD--YSHKPGAVEAVLTSLREVT---AGRLIVVLG 389 >gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. ORS278] gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Bradyrhizobium sp. ORS278] Length = 486 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 88/349 (25%), Positives = 145/349 (41%), Gaps = 45/349 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 HDLL G G+ P+ V+G++ DSR++ P + FFA+ G DG FI AV Sbjct: 3 LHDLL----GDQAGLDPRVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFIAAAVAA 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT-- 121 GA V + A G L +P + + AL A R ATI A+TG+ GKT+ Sbjct: 59 GAIAVAGHE---APAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAVTGTSGKTSVA 115 Query: 122 --TKEML-----------TIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T+++ T+ L S K+T Y + + + P+ L R +D I + Sbjct: 116 AFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPD-----PIALHRQ-IDE---ITQD 166 Query: 168 GMSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 G++HL G ++ VR T ++ H+ + +AK +F L Sbjct: 167 GVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVPP 226 Query: 221 G---TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G I +++ S + A + L + T+ + G A +L +E+Q Sbjct: 227 GGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQHC 286 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 G+ + +G +N L+ G+ +D +AL +GR Sbjct: 287 GRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGR 335 >gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] Length = 499 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 134/342 (39%), Gaps = 21/342 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + P D A Q G P + G++ DSR++ P F A+ G DG FI A Sbjct: 6 LRPSRAEADPGAADQARPAGADPD--IAGLTADSRAVRPGFVFAALPGVKADGRAFIADA 63 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGK 119 + KGA V+ GS ++ + L A ++A A R T++A+TG+ GK Sbjct: 64 LAKGAVAVLAPEGTELPAGSTALLLTDPQPRL-AFARMAAAFHGGRQPETVVAVTGTNGK 122 Query: 120 TTTKEMLT-----IALSSIKKTYACIGSYNNHIGV------PLTLAR-MPVDVDFGIFEL 167 T+T + + L + + H P++L R + D GI L Sbjct: 123 TSTVQFAAQIWARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHL 182 Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-F 224 M S G +F V A T + HL +E AKA +F+ + G I Sbjct: 183 AMEASSHGLEQFRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAV 242 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 LN D F G + + S+G + A+ ++ + + + + + G+ + V Sbjct: 243 LNADSDDFHFFATICDERG-QRVLSYGLA-GAELRVTGVEPLAHGQRLSLTVLGRDVTVD 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 G A N+L LG+V D A+ L GR Sbjct: 301 LPLAGRFQAWNVLCALGLVIGSGGDATRALATLPALEGVPGR 342 >gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas entomophila L48] gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas entomophila L48] Length = 487 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 154/376 (40%), Gaps = 44/376 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+ +GA V + + +P+ Sbjct: 17 LIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQGASVLPITEVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++G L++ +A R + + ++ +TG+ GKT+ ++L AL ++ + IG Sbjct: 77 IPVKGLIGQLSQ--IAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQALDALGQRCGLIG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFEL--GMSHLGEIRFLTHLVRP--------HIA 187 + L R+ P+ V + +L G + + +H + IA Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALEQGRVAALDFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL + +AKA++F + +N DD F L A++H Sbjct: 195 VMTNLSRDHLDYHGSMGAYEAAKAKLFAWSSLRARV-VNLDDDFGRRL-AEAHGQSRLIS 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYHMAQNMLMTL 300 YS F C + ++ + V QG+ + +G NML + Sbjct: 253 YSLQDPAATLF-------CKQAAFNDDGVRAVIVTPQGEHA-LRSRLLGRFNLSNMLAAV 304 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L +D +K H GR +R L G L+ Y P +++ VL Sbjct: 305 ATLLALDYPLDEILKVTPQLHGPIGRMQR----LGGGDKPLVVVDYAHTPDALE---KVL 357 Query: 361 SQISPHGEGRRIAVLG 376 + PH G+ + + G Sbjct: 358 EALRPHAHGKLLCLFG 373 >gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum SK46] gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum SK46] Length = 497 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 40/335 (11%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138 L IPV DVL L + SKA +IA G+ GKT+T M AL + + ++A Sbjct: 105 LDIPVLKRSDVLALLMQ-------DSKALLIA--GTHGKTSTTSMTVAALQAAGLDPSFA 155 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G +++ V+ G ++ ++ E +P +AVIT I P HL Sbjct: 156 VGG----------LMSKAGVNAHQGSGDVFVAEADESDASLLTYQPEVAVITNIEPDHL- 204 Query: 199 NFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +F G +E A + F E ++ G + + +D L ++ GI + G+ A Sbjct: 205 DFFGDDETYYAVFDAFAERIKDGGHLVVCAEDPHAAALGERAVERGINVLAYGGEDALAK 264 Query: 258 FQ-------LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 L W + +E + S+ H G HMA N L + + AD+ Sbjct: 265 HPTLPVGAVLHGWTPVGGGARVEATVGSTSVRFELHQPGRHMALNALAAMVGGDCVGADL 324 Query: 311 DTAIKALSVFHPKEGRGKR--YRCALNQGFF--TLIDESYNANPASMKAAISVLSQ-ISP 365 + L F G +R Y ++ +G F I + Y +P + A + + ++ Sbjct: 325 GRMARGLGEF---TGVRRRFDYHGSIGEGPFVGARIYDDYAHHPTEVSAVLGAARELVTE 381 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 G G IAV + +++F + A LSL + Sbjct: 382 AGRGNVIAVF--QPHLYSRTRNFADEFAAALSLAD 414 >gi|238855721|ref|ZP_04646017.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3] gi|260665507|ref|ZP_05866354.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|282934756|ref|ZP_06339996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii 208-1] gi|238831667|gb|EEQ24008.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3] gi|260560775|gb|EEX26752.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|281301167|gb|EFA93471.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii 208-1] Length = 435 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 32/261 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L+ T IG R D F ++E Sbjct: 106 TSIGISGAHGKTSTTALLSHVLTEAAPTSYLIGDGE---------GRGVKDSRFFVYE-- 154 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F I + SA + +K +F+ Sbjct: 155 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKK--ALFVW 207 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + ++ K Y++G + DFQ K+ ++ + V+ GK + E Sbjct: 208 GDDPRLQKIETKIPK------YTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKT 261 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N L +G+ ++ K L + G KR + G T+ID+ Sbjct: 262 HLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTY----GGAKRRFSEKDFGDITVIDD- 316 Query: 346 YNANPASMKAAISVLSQISPH 366 Y +P M+A I Q P+ Sbjct: 317 YAHHPTEMRATIQAAKQKFPN 337 >gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] Length = 503 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 148/372 (39%), Gaps = 33/372 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLS 82 + G+S+DSR + FFA+ G G D I +A++ GA ++ + + S Sbjct: 27 ITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTDAQGAQIAAKELADSS 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTK----------EMLTIA 129 + +D GA LA+ A L A T+IA+TG+ GKT+ E+ + Sbjct: 87 AALIIAEDPRGA---LALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMELAAVN 143 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPH 185 L + A + P+TL R GI + M SH + R L +V Sbjct: 144 LGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGLDQRRLDGVVLA- 202 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T HL E AK +F L + G +N DDS + + + G+ Sbjct: 203 AAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGPEVVQIAESRGL 262 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +TI + G+ +A +L + S + Q S + IG A N+L+ +V Sbjct: 263 ETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQADNVLLAAALVI 321 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D + A L GR ++ G +D ++ + A + L + Sbjct: 322 AAGGDPEEAFDTLPYLTTVRGR-MQHAATRRNGGSVFVDYAHTPD-----AVATALMAMR 375 Query: 365 PHGEGRRIAVLG 376 PH G+ IA++G Sbjct: 376 PHVMGKLIAIVG 387 >gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] Length = 493 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 88/380 (23%), Positives = 152/380 (40%), Gaps = 49/380 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ + +DSR + F AI G DG FI A+Q+GA V+ + G++ I Sbjct: 24 LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEI-- 81 Query: 86 FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137 VDDV L AL+K +A L + T +I +TG+ GKTT +++ + + Sbjct: 82 --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139 Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ N + + TL+ + + L +S G I+ + Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238 V T ++ HL +EE A+AK +F + G +N DD ++ + L Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296 + A+ +K F +S A+ +S + ++ GK E H IG A N+ Sbjct: 257 ALAVSLKPTTEFSQSVYAN------HIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ + L + P GR + ++ N Y P +++ A Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVV----DYAHTPDALEKA 366 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L H +G A+ G Sbjct: 367 LQAL---RVHCQGELWAIFG 383 >gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme DSM 15981] gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme DSM 15981] Length = 462 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 81/360 (22%), Positives = 152/360 (42%), Gaps = 37/360 (10%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R+ IAI+G+ GKTTT M+ L + G + + V L + ++ G Sbjct: 110 MRNYKQSIAISGTHGKTTTTSMVAEMLLA--------GDMDPTVSVGGILKDIGGNIRVG 161 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 +L ++ E FL+ P + V+ I HL F +E+I + + L + G Sbjct: 162 SPDLFVTEACEYTNSFLSFY--PTLEVVLNIEADHLDFFKDLEDIRHSFRLFAQKLPQDG 219 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279 + +N S E L+ + L + I +FG S ++ + + + + + S+ ++ +QGK Sbjct: 220 LLVIN---SGIENLQQITDGLKCR-IVTFGSSPDSHYTAQNITYDEFARPSY-DLIVQGK 274 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + V G+ G H N L + +V L + + L F G +R+ G Sbjct: 275 LVNRVSLGVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNF---SGTDRRFEKKGEIGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID+ Y +P +KA ++ PH R A L E L+ + Sbjct: 332 VTIIDD-YAHHPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAET--LAAADE 388 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + LA++ + + +S + L VH+ + D + FI + ++GD+++ Sbjct: 389 VILADIYAARETDTLGVSSADIARKIQEL--GTPVHFIPSFDEIETFILENCMNGDLLIT 446 >gi|219558135|ref|ZP_03537211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T17] gi|289570274|ref|ZP_06450501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mycobacterium tuberculosis T17] gi|289544028|gb|EFD47676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mycobacterium tuberculosis T17] Length = 163 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 37/157 (23%) Query: 339 FTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 T+ID+ YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + Sbjct: 8 VTVIDDVYNANPDSMRAGLQALAWIALQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 67 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSS-----------LVD- 443 ++S + + G RSI +H+ ++G + +++ + D Sbjct: 68 VRLDVSRLVVVGTG---------RSISAMHHGAVLEGAWGSGEATADHGADRTAVNVADG 118 Query: 444 -------------GDVVVVKSSNSCGFYRLINLLLEE 467 GDVV+VK+SN+ G + + L+ + Sbjct: 119 DAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 155 >gi|47565112|ref|ZP_00236155.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241] gi|47557898|gb|EAL16223.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241] Length = 436 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ SA E+ L I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDINDVFSAFQEM--ALRVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis ATCC 23457] gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC 23457] Length = 488 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G ID Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|229105316|ref|ZP_04235965.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28] gi|228678242|gb|EEL32470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28] Length = 436 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + I DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIAICHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC 29799] gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC 29799] Length = 461 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 8/130 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIA+TGS GKTTT T +S + K +IG PL LA P + ++ + Sbjct: 118 IIAVTGSDGKTTT----TTIISELLKKAGYNVYVGGNIGKPL-LAETP---NMEPDDMVV 169 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + +T + P IAV+T +AP HL +EE AK IF N+D+ Sbjct: 170 LELSSFQLMTMDMSPDIAVVTNVAPNHLDVHKSMEEYVEAKENIFAHQSTENLAVFNWDN 229 Query: 230 SFFELLKAKS 239 K+ Sbjct: 230 EITRDFSKKA 239 >gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella schoenbuchensis R1] Length = 483 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GIS DSR + P F A++G DG ++ A+++GA ++V TD ++ + +PV Sbjct: 21 ITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIV--TDYNCALEGVYVPVL 78 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V DV +L A + A+TG+ GKT+ Sbjct: 79 RVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTS 113 >gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 499 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 28/274 (10%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+ G+ GKT+T M+ AL I + IG +G T AR+ F + E Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P + VIT I P HL ++ A L K GT+ L D Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSSAAFEQAFVNFTGRLRKGGTLVLCAD 235 Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281 D+ E + + A G + I Y FG D QL + + + +V + Sbjct: 236 DAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295 Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 +V H + G HM N LG +L D+ I AL F G +R + + Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + D+ Y +P + A + ++ G+GR Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383 >gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon phaeoclathratiforme BU-1] gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon phaeoclathratiforme BU-1] Length = 464 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 22/166 (13%) Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 ++V ++ + +IP++ +++ +A+R KA I+ ITG+ GKTTT L AL Sbjct: 80 EVVTTLQARNIPLY---------SEIELASRF-CKARIVGITGTDGKTTTS-TLVHALCE 128 Query: 133 IKKTYACIGSYN-NHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +Y+ +IGVP + M +D+ D + EL L + ++P +AV Sbjct: 129 EDGLRNGYRAYSVGNIGVPFS--SMVLDMKAGDIAVVELSSYQLER----SPTLKPEVAV 182 Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I I P HL ++G ++ A+AK I+ T+ N DD+ Sbjct: 183 IMNITPDHLDRYAGELQGYAAAKFRIYANQGAGDTLIYNEDDALLR 228 >gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa] Length = 777 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 90/389 (23%), Positives = 161/389 (41%), Gaps = 67/389 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIP 84 + GI DSR ++ + F G DGH ++ A ++GA VV + D+ ++G ++ Sbjct: 268 ITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEADKRGAVAVVASKEVDIEETLGCKALV 327 Query: 85 VFGVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141 + V+D L LA A + SK +I ITG+ GKTTT + +K Y +G Sbjct: 328 I--VEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGKTTTANL-------VKGMYEAMGL 378 Query: 142 --------SY----NNHIGVPLT----------LARM------PVDVDFGIFELGMSHLG 173 +Y +N + P T +A+M V ++ L + Sbjct: 379 RTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEAVVMEATSQGLALGRCD 438 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDS 230 E+ F IAV T + HL EE +AKA++F + E+ + +N DD Sbjct: 439 EVDF-------DIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERHRKV-VNVDDP 490 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 A+ + + + ++KNAD K++ ++ + V +E+ +G Sbjct: 491 NAPFFIAQGNQ-EVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILEISSGLLGK 549 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYN 347 H N+L + + + A ++ ++ + G RC L Q F ++D Y Sbjct: 550 HNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG-----RCELIDEEQAFGVIVD--YA 602 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ + + ++ P R I V+G Sbjct: 603 HTPDALSRLLDSVRELRPK---RIITVIG 628 >gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus curdlanolyticus YK9] gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus curdlanolyticus YK9] Length = 489 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 11/132 (8%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A L S A II ITGS GKTTT + L + G +IG PL A D Sbjct: 106 AYLLSPAPIIGITGSNGKTTTTTWIGELLQAAGLRPIVAG----NIGTPLCEAAQEADAS 161 Query: 162 FGIF-ELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + EL L G F RPH+A++ + HL G+E+ ++KA++F Sbjct: 162 HTLVAELSSFQLKGTTSF-----RPHVALLLNVVETHLDYHGGMEDYVASKAKLFANQTA 216 Query: 220 TGTIFLNYDDSF 231 LN+DD+ Sbjct: 217 DDIAVLNWDDAI 228 >gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] Length = 519 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 31/238 (13%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNT 72 IG V + ++ +S+DSR + P FFA +G GH +I AV +GA +V V+ Sbjct: 32 IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIVYDPVIPVSP 91 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL 130 + + +IP+ + D+ L +A L+ + ++ +TG+ GKT+ L AL Sbjct: 92 VIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTSVSHFLAQAL 151 Query: 131 SSIKKTYACIGSYN---------------NHIGVPLTLARM-PVDVDFGIFELGMSHLGE 174 + IG+ + I V LA M + + E+ LG+ Sbjct: 152 HRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQ 211 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS 230 R V +IA+ T ++ HL + +AK +F GL +N DD+ Sbjct: 212 GRVSG--VAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQPGLRHA---VINGDDA 264 >gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum EbN1] gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1] Length = 471 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 150/370 (40%), Gaps = 43/370 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASILAEGGMDPTF-VIGGKLNAAGANARLGK-------GDFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L+ P I+VIT I H+ + + A + + L G L Sbjct: 160 EADESDASFL--LLTPVISVITNIDADHMDTYGHDFARLKQAFVDFLQHLPFYGVAVLCE 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + L K + +G S++A+ + + + +V S+ + Sbjct: 218 DDPHVRSIM----PLVSKQVVRYGLSESANIRAENVRAEGGRMLFDVVRTNGSVSRLPIE 273 Query: 288 I---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALN------QG 337 + G H N L + + + + IKAL+ F R +RY AL QG Sbjct: 274 LNLPGVHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYGEVALRDAEGTPQG 333 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 TLID+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 334 SCTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVLS 388 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D +L R+I V + E +D + + +++ DGDV Sbjct: 389 TVDALLLAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATVLAAVRDGDV 448 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 449 VITMGAGSIG 458 >gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] Length = 521 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 107/408 (26%), Positives = 162/408 (39%), Gaps = 60/408 (14%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR + P F AI+G H DGH ++ HA++ GA VVV+ +L +P+ V Sbjct: 27 GLAYDSRQVRPGWLFVAIRGFHVDGHQYVDHALKAGAVAVVVDVRHWNGPTTLGVPLITV 86 Query: 89 DDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D AL LA AA LR+ I ITG+ GK+TT ++++ L I + Sbjct: 87 ADSRVALAPLAANFYAHPAAHLRT----IGITGTKGKSTTTDLVSQVLEGGGLRTGMIST 142 Query: 143 YNNHIGV---PLTLARMPVDVD------FGIFELGMSHLGEIRFLTHLVRPH-------- 185 + IG P T + + + + G S+ + +H + P+ Sbjct: 143 VDFKIGARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSY-AVLESTSHALSPYWNRLGNVY 201 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF----EG-----------LEKTGTIFLNYD 228 +AV + HL E+ + KA +F EG +E+ N D Sbjct: 202 FDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSEASCHQGDRVERPVWAIANAD 261 Query: 229 D---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D FF L A S+A + +FG AD + S + V + Sbjct: 262 DPNCQFF-LDAAPSYARRL----TFGVRAAADVRAHAVASGPSGSHLRVTTPWGEAALHL 316 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N L L + ++ AI AL RG+ L Q F ++D Sbjct: 317 QIPGSFNVSNALAALSVALSQGVPLERAITALEAV--PGIRGRMQPIHLGQPFDVIVD-- 372 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 Y NP S + VLS + P +GR IAV G E +S ++A Sbjct: 373 YAHNPDSFE---QVLSMLRPLTKGRMIAVFGSAGERDRAKRSVQGEIA 417 >gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis 12822] gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica RB50] gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis] gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica RB50] Length = 468 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 75/439 (17%) Query: 53 GHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 GHD A GAG +V +T + V + + IPV +L L +L Sbjct: 56 GHD---RANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRLKRG----- 107 Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 IA+ G+ GKTTT ++ +A + T+ IG LT A + G Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGQGE 155 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 + + + + FL L P +A++T I H+ + + + SA E + L G+ Sbjct: 156 YIVVEADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSA 213 Query: 224 FLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 L DD+ E++ S + I ++G S +A Q+ ++ + M +Q + + Sbjct: 214 ILCADDANVREIMPFVS-----RPITTYGLSPDA--QVCAQDVQADGTRMRFTVQRRDRD 266 Query: 283 VVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIK-ALSVFHPKEGRGKRYR--- 331 VV + G H +N L + + + L D D AI+ AL+ F +G G+R+ Sbjct: 267 VVLPALQVELNLPGLHNVRNALAAIAVATELGVD-DAAIREALAAF---KGVGRRFTQWG 322 Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 A G FTL+D+ Y +P M A ++ P RRI + Sbjct: 323 DLPVPAAHGGGTFTLVDD-YGHHPVEMAATLAAARGAWPQ---RRIVLAFQPHRYTRTRD 378 Query: 387 SFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFL 435 F D VL + ++ V+ +G L D AL R++ V + E + L Sbjct: 379 CFE-DFVRVLGSADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQ 437 Query: 436 FIQSSLVDGDVVVVKSSNS 454 I + DGDVVVV + S Sbjct: 438 AILDFVRDGDVVVVMGAGS 456 >gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] Length = 499 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G ID Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|116617821|ref|YP_818192.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432302|ref|ZP_03914295.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271978|sp|Q03YA3|MURC_LEUMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116096668|gb|ABJ61819.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351908|gb|EEJ42141.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 444 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 31/264 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+ T IA+ G+ GKT+T +L L +I T IG GVP + F + Sbjct: 102 SQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGR-GVP--------NSQFFVV 152 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E E R P A++T I H ++GIE++ SA A+ ++K IF Sbjct: 153 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYTGIEDVTSAFADFANNVKK--AIFA 205 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 DD LK + +Y +G + DF + ++ S +V +GK + E Sbjct: 206 WGDDEHLRSLKPSAD------VYYYGVNPERDDFVATNIHKSTQGSHFDVVFRGKDLGEF 259 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342 G H N L + + + D+D + L + +G + R + Q T+I Sbjct: 260 AVPLFGQHGILNALAVIAVSYMEEVDLDLIRQYLLTY-----QGVKRRFSEKQIADITVI 314 Query: 343 DESYNANPASMKAAISVLSQISPH 366 D+ Y +P + A + Q P+ Sbjct: 315 DD-YAHHPTEITATLDAARQKYPN 337 >gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 23/225 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + D+R + F AIKG DGH FI A++KGA +VV + G + + Sbjct: 25 VSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVVQEETDDIQG---VTIV 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V++ AL LA S +I +TG+ GKTT M+ K IG+ Sbjct: 82 RVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIFRDQKDRTGLIGTMY 141 Query: 145 NHIG---------VP--LTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 IG P LTL + ++ + + +S + I+ + AV T Sbjct: 142 RRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQGRVWGIDVDTAVFT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKT----GTIFLNYDDSF 231 HL + E A AK+ +F L T T +N DD Sbjct: 202 NFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEM 246 >gi|281492643|ref|YP_003354623.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281376307|gb|ADA65798.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 443 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + G+ GKT+T ML +S+I T IG R ++ +FE Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 152 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++T I H F GIE++ SA + ++K IF + Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D L AK+ IY +G N D++ + + S + +G+ + V Sbjct: 208 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 261 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L D+ L F RG + R + T+I + + Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381 +P ++A + Q PH R IA + E+ Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360 >gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] Length = 811 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 30/274 (10%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGV 149 L +++ + A L + T I ++GS GKTT ++T + KK +YA IG N+ Sbjct: 88 LPMMHRAELLAFLMQEHTSILVSGSHGKTTVTSLITAIFQTAKKDPSYA-IGGLNS---- 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIAS 208 L+L + ++ I E S G +++ P IAV+T + HLSNF G E++A Sbjct: 143 -LSLNGYSGNSEYFIAEADESD-GSLKYY----HPKIAVVTNLDNEHLSNFEGNKEKLAL 196 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC 266 E ++ F N D + + KS+ +Y + ++ W+ Sbjct: 197 TIEEFARKVDNPNLCFYNGDCQELKGRISGKSYGFSQDCHLYIYSHRQDG------WRSV 250 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 S++E Q + + IG H N + +GI L D ++ +AL F + R Sbjct: 251 FSLSFLEKDYQDIDLNL----IGKHNVANAAVAMGIALTLGIDEESIREALKNFPGVQRR 306 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +R + + F L E Y +P+ + + L Sbjct: 307 MERKNTS--ETFLFL--EDYAHHPSEISCTLGGL 336 >gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase; AltName: Full=D-lysine-adding enzyme; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] Length = 490 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 38/368 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S S + + F +G +D H+ I ++KGA VVV ++ L P Sbjct: 25 ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEREI-----DLDFPYI 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGK-------------TTTKEMLTIALSSI 133 V D K+A ++ + T+ E ++ +++ Sbjct: 80 QVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAV 139 Query: 134 KKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIAV 188 K+ SY + I P L+ M + + G F L +S ++ VR + + Sbjct: 140 KRILG--NSYYDDITTPDAITILSAMKENREGGGKFFALEVSSHALVQQRVEGVRFDVGI 197 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T I+ HL E AK +F+ L+ G LN +S + KS + Sbjct: 198 FTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--ESLADAFNRKSRKI------ 249 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +FG SKNAD++L + E + ++ ++V IG A N + + L Sbjct: 250 TFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIGDFNAYNAAAAIAALHQLGY 309 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D +L F EGR + R A G ++D + +P +++ + + +IS + Sbjct: 310 DPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS---Q 364 Query: 369 GRRIAVLG 376 GR I V G Sbjct: 365 GRVIVVFG 372 >gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT] gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT] Length = 476 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 57/337 (16%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IAI G+ GKTTT M+ + A + + T+ G N ++G L + D Sbjct: 121 IAIAGTHGKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADESDAS 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P ++V+T I P H+ + G EE+ L G Sbjct: 181 FLHL---------------QPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGL 225 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 + DD +L S +G + + ++G S AD+++ ++Q Q + V G+ + Sbjct: 226 SVMCADDP---VLMELSSQVG-RQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERI 281 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336 +V+ + G H A N L + + + + AL+ F +G G+R+ L Q Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEF---QGAGRRFD-QLGQFIRPN 337 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386 G L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 338 GKVMLVDD-YGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +D+ +L +Y ++G A +L RSI Sbjct: 395 ---VDVLIMLDVYAAGEQAIAG----ADSRSLCRSIR 424 >gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] Length = 495 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLSIPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G +PV Sbjct: 30 LELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGANLVLAQADAEHPNGVSEYRQQVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + D+ L+++A + +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 IYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus pyogenes ATCC 10782] gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus pyogenes ATCC 10782] Length = 438 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 96 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 151 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 152 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 207 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 208 LNANQEISATLAKTTQA----TVIPFSTQKVVD 236 >gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis M5-90] Length = 490 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G ID Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYID--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus coleohominis 101-4-CHN] Length = 457 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 110 IIAITGSVGKTTT----KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++++TGS GKTTT ++ML LS I K Y +IGV T + D Sbjct: 114 LVSVTGSNGKTTTTTLIQKMLDAGLSHIAK-------YAGNIGVSFTKTAQELSAD---- 162 Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + ++ L + L T + PHIAVIT I HL E +AK I K + Sbjct: 163 DYLVTELSSFQLLGTPDLHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDDYLI 222 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 +N+D ++ + +S A I GKSK+ + Sbjct: 223 MNWDRDEWQEIARRSSAT-IVPFSRLGKSKDGAY 255 >gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus NJ8700] Length = 476 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 101/438 (23%), Positives = 173/438 (39%), Gaps = 82/438 (18%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H+ + GA +VV+++ + V + IPV +L L R R Sbjct: 67 FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQRAQMLAEL------MRFRHG 120 Query: 108 ATIIAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDV 160 IA+ G+ GKTTT M+++ A + + T+ G N H+G L + Sbjct: 121 ---IAVAGTHGKTTTTAMVSMIYAQAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADES 177 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 D L +P I+++T I P H+ + G +E+ L Sbjct: 178 DASFLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPF 222 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278 G L DD+ L + + + ++G S+NAD+++ ++Q Q + + G Sbjct: 223 YGLAVLCADDADLMSLVPQVG----RQVITYGFSENADYRIEDYQQTGFQGHYTVICPNG 278 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-- 336 + ++V+ + G H A N L + + + AL+ F +G G+R+ L Q Sbjct: 279 ERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADF---QGAGRRFD-QLGQFI 334 Query: 337 ---GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383 G L+D+ Y +P + I Q PH R + D ++ Sbjct: 335 RPNGKVMLVDD-YGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQV-- 391 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLF 436 LSQ +D +L +Y + G A AL RSI + S+T L Sbjct: 392 LSQ---VDALIMLDVYPAGESPIVG----ADSKALCRSIRNLGKVDPILVSDTAQ-LGDV 443 Query: 437 IQSSLVDGDVVVVKSSNS 454 I + DGD+++ + + S Sbjct: 444 IDQIIQDGDLILAQGAGS 461 >gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS315] gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes SSI-1] gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS10270] gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase [Streptococcus pyogenes] gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase [Streptococcus pyogenes MGAS315] gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase [Streptococcus pyogenes SSI-1] gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS10270] Length = 452 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTQA----TVIPFSTQKVVD 250 >gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase (udp-n-acetylmuramoyl-l-alanine synthetase) protein [Ralstonia solanacearum MolK2] gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase (udp-n-acetylmuramoyl-l-alanine synthetase) protein [Ralstonia solanacearum MolK2] Length = 483 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 149/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P RR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D +L R++ V + E ++ + I + D D Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|161723236|ref|NP_268197.2| UDP-N-acetylmuramate--L-alanine ligase [Lactococcus lactis subsp. lactis Il1403] gi|25014077|sp|Q9CE10|MURC_LACLA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|326407576|gb|ADZ64647.1| UDP-N-acetylmuramate--alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 443 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + G+ GKT+T ML +S+I T IG R ++ +FE Sbjct: 104 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 152 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++T I H F GIE++ SA + ++K IF + Sbjct: 153 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D L AK+ IY +G N D++ + + S + +G+ + V Sbjct: 208 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 261 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L D+ L F RG + R + T+I + + Sbjct: 262 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 316 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381 +P ++A + Q PH R IA + E+ Sbjct: 317 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 360 >gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M04-240196] Length = 445 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRDD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 486 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ F IKG DGH++I A+Q GA LVVV+ S I Sbjct: 24 ITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIEGKIDYI 83 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ +I +TG+ GKT+T M+ L + + IG+ Sbjct: 84 KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 143 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 144 NMIGSREIEAQHTTPESYDLQKLFWQMKSEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E +AK ++F G+ K + N DD + K + Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDMW-----GKRIIEMYPDSVT 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A R K ++ E+ G+ E+ + G N L L Sbjct: 255 YAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACCISLGIK 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D K L GR + NQ F +ID Y P + + +++++ +G Sbjct: 315 LDDIKKGLENLKAVPGRFEIVES--NQKFTVVID--YAHTPDGLLNLMKTVNEVT---DG 367 Query: 370 RRIAVLG 376 R++ + G Sbjct: 368 RKVLLFG 374 >gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] Length = 487 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCCIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++ HL +E A+AKA++F GL +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290 + T YS S + C E + + ++ + V HG +G Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +G + L + ++ L GR +R L G L+ Y P Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ VL + PH R + + G Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373 >gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens NRL30031/H210] gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens NRL30031/H210] Length = 445 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 71/180 (39%), Gaps = 30/180 (16%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A KA+IF G G LN DD F +K + + F ADF L + Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 >gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] Length = 493 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 47/372 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V+ + +DSR + F AI G DG FI A+++GA V+ + G++ I Sbjct: 24 LVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI-- 81 Query: 86 FGVDDV----LGALNKL--AVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY 137 VDDV L AL+K +A L + T +I +TG+ GKTT +++ + + Sbjct: 82 --VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKA 139 Query: 138 ACIGSYNN---------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A +G+ N + + TL+ + + L +S G I+ + Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSL-AEQKAQYTALEVSSHGLIQGRVKAL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAK 238 V T ++ HL +EE A+AK +F + G +N DD ++ + L Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTE-HQCGHAVINVDDVVGAAWAKQLN-N 256 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNM 296 + A+ +K F +S A+ +S + ++ GK E H IG A N+ Sbjct: 257 ALAVSLKPTTEFSQSVYAN------HIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANL 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ + L + P GR + ++ N ++D Y P +++ A Sbjct: 311 MLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKV--VVD--YAHTPDALEKA 366 Query: 357 ISVLSQISPHGE 368 + L ++ HGE Sbjct: 367 LQAL-RVHCHGE 377 >gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 101/415 (24%), Positives = 164/415 (39%), Gaps = 48/415 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DL++ +Q I ++ I DSR + A+KG DGH FI AV + Sbjct: 2 IMNLEDLIKKVQILDILGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFIDAAVAQ 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 GA VV N +I + I V+D AL +LA K +I ITG+ GKT+ Sbjct: 62 GAAAVVCNA-FPENIDT-DITYIKVEDSAKALGQLASGFFGNPSEKLNLIGITGTNGKTS 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VP--------LTLARMPVDV-----DFGIF 165 +L + A I + I +P +TL ++ + ++ Sbjct: 120 VTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEAVEAGCEYAFM 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + + R T + IA T I+ HL E K F+GL Sbjct: 180 EVSSHGIHQKR--TERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGLNPDAVAIT 237 Query: 226 NYDDSFFELL----KAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 N DD +++ KA + +KT+ + GK+ DF + M + GK Sbjct: 238 NLDDKNGKIMLQNTKATRKSYALKTMADYHGKTTETDF-----------NGMLLNFDGK- 285 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 E G N+L+ I D +KA+S+ +GR + + + G F Sbjct: 286 -EFWTTLTGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKS--DGGIFF 342 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 +ID Y P ++ + +++I E R I V G C GE Q+ ++ ++ Sbjct: 343 VID--YAHTPDALDNILDSINEIRTKNE-RLITVFG--C-GGERDQTKRPEMGKI 391 >gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551] gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase (udp-n-acetylmuramoyl-l-alanine synthetase) protein [Ralstonia solanacearum IPO1609] gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551] gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase (udp-n-acetylmuramoyl-l-alanine synthetase) protein [Ralstonia solanacearum IPO1609] Length = 483 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 149/371 (40%), Gaps = 47/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANARLGT-------GDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKS-- 280 DD + E+L S K + +G +++A Q+R + ME QL G + Sbjct: 218 DDPNVREILPFVS-----KPVVRYGFAEDA--QVRAVNARAVDGRMEFTVIRQLNGHAEP 270 Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQ 336 + + + G H QN L + I + L + +KAL+ F+ R +RY A Q Sbjct: 271 PLSITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQ 330 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M A ++ P RR+ + F D +VL Sbjct: 331 GRFTLIDD-YGHHPVEMAATVAAARGAFPD---RRLVLAFQPHRFTRTRDCFE-DFIKVL 385 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 + ++ V+ +G + D +L R++ V + E ++ + I + D D Sbjct: 386 GTVDGLLLAEVYSAGEPPIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDND 445 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 446 VVITMGAGSIG 456 >gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102] gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102] Length = 469 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL--YLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----ME 282 D + K K ++G AD + Q V +Q K E Sbjct: 219 DSEHVRAILPKIS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ P +R+ VL ++ D +VL+ Sbjct: 332 AALLVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKVLNT 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGDVV Sbjct: 388 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + S R+ + L+E Sbjct: 448 LNMGAGSIN--RVPSALVE 464 >gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] Length = 495 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 19 IGIVPQGFVNG--------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + ++PQ V G ++ DSR++ F +KG DGH F+ A +KGA +V Sbjct: 9 LALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAVAALV 68 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKE 124 D+ A + + + V D A+ + +LR +I +TG+ GKTT+ Sbjct: 69 E-DVPAEVPQ-GVTLIKVADTREAMELVTPYFYDYPGRKLR----MIGVTGTNGKTTSTN 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168 ++ + L IG+ N I +T A D+ + E+ Sbjct: 123 IIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVS 182 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIF 224 L R + AV+T I HL +E AK+ +FE G + Sbjct: 183 SHALALKRVAG--IEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAV 240 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 N DD +++ ++ A + ++G+ + D Sbjct: 241 FNMDDPSSAIIRERTKA----NVLTYGEGHDNDI 270 >gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 106/413 (25%), Positives = 157/413 (38%), Gaps = 70/413 (16%) Query: 9 DLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I G ++ P G V G+ +DSR + + F A G G FI AV +G Sbjct: 22 DVLREIPGAALS--PAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIPEAVARG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A V+V A +L V DV AL + A T ++ ITG+ GKTTT Sbjct: 80 ARAVIVARGSAAD--TLGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVGITGTNGKTTT 137 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG-EIRFL--- 178 ++ ACI G+ TL FG ++ SH E L Sbjct: 138 AHLV----------QACIDRCGGQAGIVGTLGYR-----FGDLDVHASHTSPEADELARV 182 Query: 179 ---------THL----------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 THL VR IAV T + HL +E A+AKA + Sbjct: 183 AAAMVARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARL 242 Query: 214 FEGLEKTGTIFLNYDDSF----FELL------KAKSHALGIKTIYSFGKSKNADFQLRKW 263 F L G +N DD F E+L + + L + A+ + Sbjct: 243 FVDL-GPGAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVEL 301 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + +++ + + + H +G H A N+L L + +L DV A ALS P Sbjct: 302 AHSASGTFIRARTPAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALS--SPI 359 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + G+ RC ++ Y P ++ VL+ + G GR + V G Sbjct: 360 QVAGRLERCDAPGADDVIVLVDYAHTPDALA---RVLASVRALGGGRVLCVFG 409 >gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336] gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336] Length = 476 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 57/337 (16%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IAI G+ GKTTT M+ + A + + T+ G N ++G L + D Sbjct: 121 IAIAGTHGKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADESDAS 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P ++V+T I P H+ + G EE+ L G Sbjct: 181 FLHL---------------QPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGL 225 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 + DD +L S +G + + ++G S AD+++ ++Q Q + V G+ + Sbjct: 226 SVMCADDP---VLMELSSQVG-RQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERI 281 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ----- 336 +V+ + G H A N L + + + + AL+ F +G G+R+ L Q Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEF---QGAGRRFD-QLGQFIRPN 337 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQ 386 G L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 338 GKVMLVDD-YGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV--LSQ 394 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +D+ +L +Y ++G A +L RSI Sbjct: 395 ---VDVLIMLDVYAAGEQAIAG----ADSRSLCRSIR 424 >gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836] gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836] Length = 953 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 16/147 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156 S+ I+A+TG+ GKTTT M++ + + + I L + ARM Sbjct: 516 SRIPIVAVTGTNGKTTTARMISHVFKGLGRKVGMTSTDGVVIDERLVIRADASGPKSARM 575 Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211 + VDF +FE+ G +R R +AV+ I P H L +E++A KA Sbjct: 576 VLQNPRVDFAVFEVARG--GILREGLGYERNDVAVVLNIQPDHLGLRGVDTLEQLADVKA 633 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK 238 + E + + G LN DD ++ K Sbjct: 634 VLVEAVPRDGFAVLNADDPLVRKMRRK 660 >gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia prowazekii str. Madrid E] gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia prowazekii] gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia prowazekii Rp22] Length = 445 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT +++ L+S Y G +IGVP A+ + + EL Sbjct: 107 IAITGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALQAKASNEG--YVLELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T +AV+ I P HL + + + +AKA+IF+ ++K +N D+ Sbjct: 161 QLDLVKSFT----VKVAVLLNITPDHLDRYQDMNDYIAAKAKIFDRMDKDSYAVINIDND 216 Query: 231 F 231 + Sbjct: 217 Y 217 >gi|296327766|ref|ZP_06870305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155113|gb|EFG95891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 428 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 172/424 (40%), Gaps = 56/424 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H +G +F + K G+ D V + I + +D++ Sbjct: 28 DKKAMTSEEAL-----NHLEGLEFFI----KSPGIPY--NDFVKEVQKRGIKI--LDEIE 74 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + L++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 75 IAYNYM-IEKGLKTK--IIAITGTNGKSTT----TAKISDMLNHAGYKATYAGNIGRSLS 127 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P I++I I P H+ + +E + K Sbjct: 128 EVLLKEKDLDFISLELSSFQLENIENF----KPCISMIINIGPDHIERYKSFDEYYNIKF 183 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 I + + N DD E ++ ++ + K I S K K AD + +++ + Sbjct: 184 NITKNQTEDLYFIENIDD---EEIEKRAKQIKAKRI-SVSKFKKADIFVE-----NDKIY 234 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + ++ GI H +N L + IL D + L + P E R + + Sbjct: 235 HDKDDIIDVDKLSLKGI--HNLENTLFMVATAEILKLDREKLKGFLMIATPLEHRTELF- 291 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N G I++S N S K AI I + G + +L+ Sbjct: 292 --FNYGKLKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP----- 336 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 LAE++ NI V+L G +++ L + V Y + + I++SL D K Sbjct: 337 LAEMIK-ENIKEVYLIGVIADKIENELKK---VGYEDNKIHKLVNIENSLQDMKKRFTKD 392 Query: 452 SNSC 455 S+ Sbjct: 393 SDEV 396 >gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Herminiimonas arsenicoxydans] gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Herminiimonas arsenicoxydans] Length = 508 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 87/377 (23%), Positives = 145/377 (38%), Gaps = 44/377 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSRSI + F A G DG +I A+++GA ++ + ++P +D++ Sbjct: 28 DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEWNVPHLAIDNLR 87 Query: 93 GALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS-------Y 143 +A A T+ +A+TG+ GKT+ + L ALS + + A IG+ + Sbjct: 88 ACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVGIFKH 147 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL------------VRPHIAVITT 191 H +T P V + M H G V +A+ T Sbjct: 148 GEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMALFTN 207 Query: 192 IAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245 HL + +AK +F+ GL +N DD+ E LK + +GI Sbjct: 208 FTRDHLDYHGDMAAYEAAKTMLFDWPGLRHA---VVNLDDALGVRLVERLKRRQSGIGI- 263 Query: 246 TIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGI 302 T Y+ AD L S + QL K V +G N+L +GI Sbjct: 264 TGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGIIGI 323 Query: 303 V---SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I ++V AI+AL+ G+ + + +ID Y P +++ ++ Sbjct: 324 LLAKGIALSNVVAAIEALTSV-----PGRMQQLGGAEAPLVVID--YAHTPDALEKTLAT 376 Query: 360 LSQISPHGEGRRIAVLG 376 L +++ G V G Sbjct: 377 LREVANERGGALWCVFG 393 >gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2] Length = 485 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ KGA V + + P+ Sbjct: 15 LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 74 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 132 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 133 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 189 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++ HL +E A+AKA++F GL +N DD F L + Sbjct: 190 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290 + T YS S + C E + + ++ + V HG +G Sbjct: 243 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +G + L + ++ L GR +R L G L+ Y P Sbjct: 293 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ VL + PH R + + G Sbjct: 349 DALE---KVLEALRPHAAARLLCLFG 371 >gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] Length = 487 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 84/369 (22%), Positives = 143/369 (38%), Gaps = 37/369 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83 V+ + DSR + + F A++G DGH FI AV GA +VV D+ I + + Sbjct: 24 VHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAKIVVCEQLPQDLSGHITYIQV 83 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 G L A N +K ++ +TG+ GKTT +L + I + Sbjct: 84 ENAGFALGLIAAN---FYDNPSAKLKLVGVTGTNGKTTVATLLYKLFVELGFRVGLISTV 140 Query: 144 NNHIGV-----------PLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIA 187 N + P++L + ++ D+ E+ + + R +T L Sbjct: 141 QNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFMEVSSHAVAQHR-ITGLSFVG-G 198 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + AK F+ L K+ +N DD ++ + A Sbjct: 199 VFTNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALVNIDDKNGSVMLQNTDAYK---- 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++G ADF+ R E + + +Q + EV +G A N+L + +L Sbjct: 255 KTYGLKNIADFKGR----IVESHFNGMLMQIDTREVWIRLVGAFNAYNLLAVYSVAILLE 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + LS EGR G ++D Y P +++ + + + + Sbjct: 311 QDTTRVLTILSRLTGAEGRFDTLVSG--NGVIGIVD--YAHTPDAVENVLRTIVDLRKNK 366 Query: 368 EGRRIAVLG 376 E + IAVLG Sbjct: 367 E-QIIAVLG 374 >gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M13399] gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240013] Length = 445 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNSDDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] Length = 501 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 63/375 (16%) Query: 11 LQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 L+ I G S VP+ ++ ++ DSR+ P AF AI G DG F+ A+ GA LV Sbjct: 8 LEKILGAS---VPESVDGIDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASLV 64 Query: 69 VVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V D+ + P V D V A A A T+ ITG+ GKTT+ +L Sbjct: 65 VAERDVEGA------PTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTTSSYVL 118 Query: 127 TIALSSI-----------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 LS+ ++ + + V LARM + G+ Sbjct: 119 HGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARM--------RDAGV 170 Query: 170 SHLGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 H+ + +H + H A+ T + HL +E+ K +FE + G Sbjct: 171 EHV-VLETSSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFEWTD--G 227 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---------WKQCSEQSWM 272 N DD++ + A+ + FG S+NAD+++ K + + + ++ Sbjct: 228 PKLTNVDDAYGARIVAE-----VPGTLGFGVSENADYRITKVHPSDGGTAFTLTTPERFL 282 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + +E+ +G + N+ I + +DT + A++ GR +R Sbjct: 283 DGRDAPGVIELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPA 342 Query: 333 ALNQGFFTLIDESYN 347 A +GF ++D ++ Sbjct: 343 ATAKGFEVVVDYAHT 357 >gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] Length = 485 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + + Sbjct: 22 DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D++ L +A + K II +TG+ GKT++ M+ + T IG+ Sbjct: 79 IDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136 Query: 146 HIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG V + P +D IF+ + +I ++ V H A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ N DD + Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKY 236 >gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 414 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 72/348 (20%), Positives = 140/348 (40%), Gaps = 58/348 (16%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 +KA +IA+TGS GK+T ML L ++ +G +IG P L ++ D+ + Sbjct: 94 NTKAKMIAVTGSNGKSTIVTMLDFVLRNLGYKSILVG----NIGTP-PLNKIGEKFDYCV 148 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ + L + V + + ++P HL + EE +K L K F Sbjct: 149 VEVSSFQID----LFNSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKL----NLAKFSKDF 200 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 YD H GIK ++Q+ + + + K +++ Sbjct: 201 FVYD----------VHNTGIKYA--------GEYQIVRGSIYKDTT--------KLLDIT 234 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTL 341 + G H +N+++ L I D+ A+ A+ F +G ++RC + N T Sbjct: 235 ETNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIKKF-----KGLKHRCEIVKNIAGVTY 289 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 I++S N + AA++ ++ I +LG + + G+ S +++ L+ Y + Sbjct: 290 INDSKGTNVGATIAALNSIT-----SSKNIILLLGGVAKGGDFSL-----MSKSLAKY-V 338 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +V+L G +++ + M F D ++V++ Sbjct: 339 KYVYLYGQDKEYIENYIKDLCQYQICNDMKDAFRLASQKAQDSEIVLL 386 >gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O395] Length = 467 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 108/439 (24%), Positives = 182/439 (41%), Gaps = 69/439 (15%) Query: 32 IDSRSIAP-QEAFFAIKGPHYDGH--DFILHAVQKGAGLVVVN------TDMVASIGSLS 82 ID+R I P QE + H G +++L+A LVV N T + + + Sbjct: 65 IDTREIPPGQEQLSSDVALHRGGWNLEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 119 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV G ++ +IAITGS GK+T + L+ L++ A +G Sbjct: 120 IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 167 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IGVP L + DV+ + EL L T ++ A ++ H+ + G Sbjct: 168 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 220 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + AK IF+ E T +N DD+ HA ++ + +FG + A F L + Sbjct: 221 MGDYRQAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ 272 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 Q E + + E+ +G H N+L L ++ + A+ AL Sbjct: 273 -HQGREYLFARDEAVMACAELSL--VGRHNVTNVLTVLALLDSAGVNFRLALDAL----- 324 Query: 323 KEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 K G +RC A N G +++S N AS AA+S L EG+ ++G + Sbjct: 325 KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVG 378 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + + + LA VL+ + L F V +P + ++M+ + I+ Sbjct: 379 KGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSMESIIRSIRP 429 Query: 440 SLVDGDVVVVKSSNSCGFY 458 L GD+V++ S +C + Sbjct: 430 QLKSGDMVLL--SPACASF 446 >gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 487 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++ HL +E A+AKA++F GL +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290 + T YS S + C E + + ++ + V HG +G Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +G + L + ++ L GR +R L G L+ Y P Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ VL + PH R + + G Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373 >gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] Length = 485 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 25/222 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + + Sbjct: 22 DGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEM---KHKVSYVL 78 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +D++ L +A + K II +TG+ GKT++ M+ + T IG+ Sbjct: 79 IDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR--IGTIEY 136 Query: 146 HIGVPL--TLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + + P +D IF+ + +I ++ V H A+ Sbjct: 137 KIGDEVFEAVNTTPESLDLIKIFDKTLKK--KIEYVVMEVSSHSLEIGRVDVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E AK ++F L+ N DD + Sbjct: 195 TNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKY 236 >gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] Length = 496 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/378 (22%), Positives = 142/378 (37%), Gaps = 54/378 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR++ F A+ G DGH+++ A++ GA V+V+ + S + V V+ Sbjct: 29 VTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSKPVDVS---GDVCVITVE 85 Query: 90 DVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141 D A+ + V A +I +TG+ GKTTT M+ L + IG Sbjct: 86 DTRAAM-MVCVPYFFDYPANSMRMIGVTGTNGKTTTSHMIRHILKAQGHKVGVIGTVHIM 144 Query: 142 ----SYNNHIGVPLTLARMPV-------DVDFGIFELGMSH---LGEIRFLTHLVRPHIA 187 SY H P + + V + + E+ SH LG + + + A Sbjct: 145 IGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVS-SHALALGRVSGVEY----DTA 199 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------FLNYDDSFFELLKAKSHA 241 V T + HL E +AK ++FE + K + +N DD++ + K+ A Sbjct: 200 VFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRVVEKTTA 259 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++ + + S V G V + G N L +G Sbjct: 260 ----PIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAIG 315 Query: 302 ---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I D+D A+K S G+ Q F ++D Y P ++ + Sbjct: 316 ACLLEGISMEDIDKALKTFSAV-----PGRFELIEEGQPFAVVVD--YAHTPDGLENILQ 368 Query: 359 VLSQISPHGEGRRIAVLG 376 I E R I V G Sbjct: 369 TAKAIQ---ENRIIVVFG 383 >gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 33 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 90 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 91 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 150 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 151 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 205 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 265 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 324 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 377 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 378 TTGRVIVVFG 387 >gi|331013841|gb|EGH93897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 92 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 +ID++YNANPAS+ AA+ +L+ S GR + VLGD+ E+GE ++ H D+ Sbjct: 16 VIDDTYNANPASINAAVDILTGFS----GRTVLVLGDIGELGEWAEQGHRDVG 64 >gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAb1] gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] Length = 487 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++ HL +E A+AKA++F GL +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVINLDDDFGRRLAGE 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290 + T YS S + C E + + ++ + V HG +G Sbjct: 245 EQDSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +G + L + ++ L GR +R L G L+ Y P Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ VL + PH R + + G Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373 >gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus HTA426] gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61] gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3] gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52] gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus HTA426] gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61] gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3] gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52] Length = 434 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 132/332 (39%), Gaps = 51/332 (15%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L +PV LG +L K T IA+TGS GKTTT +L + T Sbjct: 82 QLGVPVIRYHRFLG---------QLAGKFTSIAVTGSHGKTTTTGLLAHVMQGAHPTSYL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG G P + + +FE E R FL++ P A++T I H Sbjct: 133 IGDGTGK-GEPGS--------KYFVFE-----ACEYRRHFLSYF--PDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F+ ++++ SA ++ ++K I DD + ++AK L Y FG+ D Sbjct: 177 DYFANVDDVFSAFQQMANQVKK--AIVACGDDPYLPNIQAKVPIL----FYGFGEEN--D 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 FQ R + +E +V ++ S + G H N L + + D T Sbjct: 229 FQARNIVKTTEGMAFDVFVRNTFFASFAIPR--FGTHNVLNALAVIALCHYEGVDAGTIA 286 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 K L F +G +R+ G LID+ Y +P + A + Q P GR + Sbjct: 287 KRLQTF---QGVKRRF-SEKTVGRQVLIDD-YAHHPREITATLEAARQKYP---GREVVA 338 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +Q+F + AE SL HV+L Sbjct: 339 IFQPHTYTR-TQTFLREFAE--SLLQADHVYL 367 >gi|12725089|gb|AAK06138.1|AE006433_8 UDP-N-acetylmuramate-alanine ligase [Lactococcus lactis subsp. lactis Il1403] Length = 457 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + G+ GKT+T ML +S+I T IG R ++ +FE Sbjct: 118 TSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGD---------GTGRGIEGSEYFVFE-- 166 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++T I H F GIE++ SA + ++K IF + Sbjct: 167 -SDEYERHFMPY--HPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKK--GIFAYGE 221 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 D L AK+ IY +G N D++ + + S + +G+ + V Sbjct: 222 DVNLRKLTAKA------PIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPA 275 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L D+ L F RG + R + T+I + + Sbjct: 276 YGKHNVLNALSVVAVCHNLGLDMTEVADHLLTF-----RGVKRRFTEKKVGETVIIDDFA 330 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM 381 +P ++A + Q PH R IA + E+ Sbjct: 331 HHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEV 374 >gi|330684044|gb|EGG95800.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis VCU121] Length = 437 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F +E++ A E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--DPDYAIMTNIDFDHPDYFKDVEDVFDAFQEMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282 DD + L+A IY +G ++ D + + + S +V + G+ + Sbjct: 201 IAWGDDEYLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQFDVYINGEFYGQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + ++D +AL F + R + + NQ L+ Sbjct: 255 FLSPQYGDHNILNTLAVVTISYLEKMNIDNIKEALETFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + LS + H+ L Sbjct: 311 DD-YAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFAT--SLSAADHVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase [Kitasatospora setae KM-6054] Length = 480 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 29/144 (20%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSK-------ATIIAITGSVGKTTTKEMLTIALSSIKK 135 +PV+G + +A RLR+ A +A+TG+ GKTTT +ML L++ K Sbjct: 99 VPVWG---------DVELAWRLRAPHPATGEPAPWLAVTGTNGKTTTVQMLASILTAAGK 149 Query: 136 TYACIGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 A +G ++GVP+ LA P DV EL L +R H + + Sbjct: 150 RTAAVG----NVGVPVLDAVLAEEPYDVL--AVELSSYQL----HWAPSLRVHSGAVLNL 199 Query: 193 APAHLSNFSGIEEIASAKAEIFEG 216 AP HL +E A+AK I+EG Sbjct: 200 APDHLDWHGSMEAYAAAKGRIYEG 223 >gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] Length = 495 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++ + +DSR I + F AI+G DG FI A+ +GA +V+ D + G + Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHAHGQVEFREG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV + ++ L++LA + +I +TG+ GKTT +++ L + A +G+ Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|114778007|ref|ZP_01452907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus ferrooxydans PV-1] gi|114551613|gb|EAU54166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mariprofundus ferrooxydans PV-1] Length = 460 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 43/319 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM 169 IA+TG+ GK+TT ++ L + K+ +G +IG P ++ D + EL Sbjct: 112 IAVTGTKGKSTTSTIIHRMLQAAGKSSVLVG----NIGKPAFDELEALEQADVIVCELS- 166 Query: 170 SHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH LT + R P++AV+ + P HL +S ++ AK +F + LN D Sbjct: 167 SHQ-----LTTVTRSPNVAVLLNLFPEHLDYYSSLDAYYQAKTAVFRYQGPDDYLVLNAD 221 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 E + + AL K +S + D QL W ++S + +Q G +EV H Sbjct: 222 SP--ECREMTTTALAKKLQFS-----HDDCQLDAW---FDESSIHIQTDGGDIEVPHACC 271 Query: 289 GYHMAQNM--LMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 A NM +M + + A V+ A+ +AL F R + ++ QG T I++ Sbjct: 272 ELLGAFNMYNVMAAILATSRMAVVNRAVIEQALKGFTGLPDRMEYV--SVVQG-VTFIND 328 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE---LSQSFHIDLAEVLSLYNI 401 S + P + AA+S A +G + G+ ++ + LA ++ LY + Sbjct: 329 SISTTPDTTCAALSAFE-----------ASVGTLILGGQARPVATERYERLAAMIRLYGV 377 Query: 402 SHVWLSGFHVLALKDALPR 420 H+ + A++D L R Sbjct: 378 QHLIFLPQNGPAMRDILQR 396 >gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 488 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 22 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 80 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 139 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 140 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 194 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 254 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 313 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 366 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 367 TTGRVIVVFG 376 >gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS10750] gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS10750] Length = 452 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Actinobacillus succinogenes 130Z] gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus succinogenes 130Z] Length = 437 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 37/277 (13%) Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +V+G + A +++K ++AITGS GK+T +T ++ + K +IG+ Sbjct: 91 EVVGDIELFCREANIQAKP-VVAITGSNGKST----VTTLVAEMAKADGLRAGMGGNIGI 145 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P L+ + + D + EL L T +R A + + H++ ++ +E+ A Sbjct: 146 P-ALSLLDAEYDLYVLELSSFQLE----TTFGLRARAATVLNVTEDHMNRYADLEDYRQA 200 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +I+ E T +N +DS + K ++ K +SFG+S +AD+ L+ + +Q Sbjct: 201 KLKIYANAE---TAVINAEDSLTQDNKQRA-----KRQFSFGES-HADYWLK--TENGKQ 249 Query: 270 SWM---EVQLQGKSMEVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPK 323 M EV L +++ G H N L ++ + V + T + TA++ + Sbjct: 250 YLMAGREVVLPCDEVKIS----GRHNYMNALASIALAQAVGVKTHGIRTALRTFT----- 300 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G R++ A I++S N S AA++ L Sbjct: 301 -GLDHRFQLAHLANGVRWINDSKATNVGSTVAALTGL 336 >gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes str. Manfredo] gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes str. Manfredo] Length = 452 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS8232] gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS10394] gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus pyogenes MGAS8232] gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS10394] Length = 452 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM 9799] gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM 9799] Length = 486 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/292 (21%), Positives = 116/292 (39%), Gaps = 30/292 (10%) Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++P I+V+T I P H+ + G I ++ + L G L DD +++ + Sbjct: 185 LQPMISVVTNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAVLCLDDPGVQVILPRVG 244 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMT 299 + I ++G +AD + + Q ++ + + + +V + G H QN L Sbjct: 245 ----RRIVTYGFHPDADVRAEDFVQVGTRTQFTLHRPNRDPLPLVLNLPGRHNVQNALAA 300 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKA 355 + + + D AL F +G G+R++ G L+D+ Y +P+ + Sbjct: 301 IAVAMEEGVEDDAIEAALDQF---QGIGRRFQQYGEFDTGAGKVLLVDD-YGHHPSEVAV 356 Query: 356 AISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 I PH R + D C + LS+ +D ++ +Y+ Sbjct: 357 TIKAARASWPDRRLVMVFQPHRFSRTRDLYDDFCAV--LSE---VDCLLLMEVYSAGEDL 411 Query: 406 LSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + G AL + R I Y +GL + L DGDVV+ + + + G Sbjct: 412 IPGADSRALCRSIRQRGIDPVYVPGPEGLPALLADQLQDGDVVLTQGAGNIG 463 >gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 453 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 36/275 (13%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELG 168 II +TG+ GK+TT ++ LS + A G++ G PL A+ D+DF E+ Sbjct: 102 IIGVTGTNGKSTTSALIAHLLSKLGYKTALAGNF----GFPLADFAKQ--DLDFIAAEIS 155 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNY 227 L + HIAV+T I P HL + +K I + L G ++ N Sbjct: 156 SFQL----HWANRFSCHIAVVTNICPDHLDWHGSFKAYVESKKRIIDLLSSDGYCVYQNK 211 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + L + S GK + D + S ++ + + +++ + Sbjct: 212 DRELLRTNGCRGAVLRWASDCSTGKCEEQDEIIL------HDSEAYLRTESRDIKLFSYS 265 Query: 288 I----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTL 341 I G H +N M + V L D + LS F + +RC + T Sbjct: 266 ILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDF-----KNLPHRCEKVGEKKGITF 320 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ID+S N AS AI+ + G ++ +LG Sbjct: 321 IDDSKGTNVASSITAITSIP-------GTKVIILG 348 >gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] Length = 488 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 26/223 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ D+R + P F AI G + DGH FI A+ KGA +++ + ++PV Sbjct: 25 VTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKGAQMIIAQEPV-----ETTVPVV 79 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA +I +TG+ GKTT ++ + + IG+ Sbjct: 80 YVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTVTHLIEEVFHDLGEGTGLIGTLY 139 Query: 145 NHIGVPL---------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + TLA M D + + +S + ++ + I V Sbjct: 140 RKVNDQVYPTTNTTPDVLTNQKTLAEMR-DANVKTVSMEVSSIALVQGRVWGINYDICVF 198 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDD 229 T HL+ + + AK+ +F + T T +N DD Sbjct: 199 TNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKTAVMNIDD 241 >gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans BC] gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans K601] gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans BC] gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans K601] Length = 477 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 95/400 (23%), Positives = 168/400 (42%), Gaps = 53/400 (13%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++ +A + + T+ IG N G L + Sbjct: 98 LAELMRLRKG---IAIAGAHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGTNAKLGQ 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G + + + + FL L P +AV+T I H+ + + A + Sbjct: 154 -------GEYIVVEADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKQAFVDFL 204 Query: 215 EGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 + GT L D+ + ++L + + + S+G S+ A+ + + Q Sbjct: 205 HRMPFYGTAILCVDNPAIRDILPSVT-----CPVTSYGLSEGAEVRALDVRAVGTQMHFS 259 Query: 274 VQLQG----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 VQ + ++VV + G H N L + + + L + ++AL+ F G G+R Sbjct: 260 VQRRNGVTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGF---TGVGRR 316 Query: 330 YR-----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 ++ A + G FTLI E Y +P M A ++ P GRR+ + Sbjct: 317 FQRHGDLPAQDGGRFTLI-EDYGHHPVEMAATMAAARGAYP---GRRLVLAFQPHRYSRT 372 Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGL 433 F D +VL + ++ V+ +G + D +L R++ V + + + + Sbjct: 373 RDCFE-DFVKVLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADM 431 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFY--RLINLLLE-EFPA 470 I +S DGDVV+ + S G +++ +L + E PA Sbjct: 432 PQRIAASAKDGDVVLCMGAGSIGGVPAKIVEMLQKNELPA 471 >gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis M50/1] Length = 459 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 43/387 (11%) Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 A+ SIP+ ++LG + + + IA+ G+ GKTTT M++ L + K Sbjct: 87 AAAKERSIPMLSRAELLGQI--------MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA 138 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + I V L + ++ G ++ +S E P +VI + Sbjct: 139 --------DPTISVGGILKAIEGNIKVGKSDIFLSEACEYTNSFLHFYPRYSVILNVEAE 190 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK 254 HL F I++I ++ + +K G I +N + +++ EL + +FG + Sbjct: 191 HLDFFKDIQDIRNSFRKFAGNTKKDGAIIINGEIENYTELTSGLD-----PQVITFGLND 245 Query: 255 NADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + D+ + + + S+ + M+V H G H N L + + L D Sbjct: 246 SCDYYPSDITFDKTACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDA 305 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------I 363 + LS F + R + C T+ID+ Y +P ++A ++ Sbjct: 306 ILAGLSAFGGADRRFQYKGCVDG---VTIIDD-YAHHPTEIRATLTAAKNYPHKRLVLAF 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSI 422 PH R A L D ++ LS + + LA++ + + +S +LA LK+ + Sbjct: 362 QPHTYSRTKAFLDDFADV--LSMADVVVLADIYAAREKNTYGISSRDILAKLKE---KGT 416 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449 +Y + + + F+ + ++GD+++ Sbjct: 417 ECYYFPSFEEIEKFLLKNCINGDLLIT 443 >gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 487 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 48/367 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR + F AI G +GH++I A + GA +V + L P Sbjct: 24 ITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGATAIVCE-----QLPQLLFPDV 78 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126 V + + LA+ A K T++ +TG+ GKTT +L Sbjct: 79 SYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLS 138 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 T+A+ + + + + + + L M V + E+ + + R T + Sbjct: 139 TVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYCFMEVSSHGIDQHR--TEGLHFA 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241 + T + HL K F+ L T +N DD + KA+ Sbjct: 197 GGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPSTAFALVNIDDKNGAFMLQNTKAQKKT 256 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +KT +AD++ E + + L+ EV IG A N+L G Sbjct: 257 YALKT--------HADYK----AHIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVFG 304 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++L D A+ +S P GR + A G T++D Y P +++ + ++ Sbjct: 305 AATLLGVDELEALTLISAIEPVAGRFQYAVSA--TGVITIVD--YAHTPDALENVLKTIN 360 Query: 362 QISPHGE 368 I H E Sbjct: 361 DIRTHNE 367 >gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] Length = 486 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 147/372 (39%), Gaps = 66/372 (17%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + + F AI GP DG DF+ A++KGA +V ++ L I Sbjct: 24 VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAEL-ISHPSPR 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS------- 142 + LG L + SK ++ ITG+ GKTTT ++ LSS +G+ Sbjct: 83 EALGEL-AMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTVSYRWPG 141 Query: 143 YNNHIGVPLT----------LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 Y PLT LA+M VD + E+ L + R ++ AVIT Sbjct: 142 YEQE--APLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCG--LKFDAAVITN 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSF-FELLKAKSHAL----- 242 + HL +EE AK +F+ K G I N+DD F LL+ S A+ Sbjct: 198 VTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGII--NFDDPFGRRLLECYSPAIGYGMD 255 Query: 243 -----GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGK---SMEVVHHGIGYHMA 293 G K++ S D +R C + W +E L GK S + IG HM Sbjct: 256 ASCATGCKSLCGEMVSCTGD-GMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMG 314 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQGFFTLIDESYNANPAS 352 LT K ++VF +G G+ R +QG +D Y P + Sbjct: 315 ------------LTP------KQMNVFKEFDGVPGRLERVRNDQGLNIFVD--YAHTPDA 354 Query: 353 MKAAISVLSQIS 364 + + L + Sbjct: 355 LDNVLRTLKDLD 366 >gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL1A] gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. NATL1A] Length = 509 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 83/354 (23%), Positives = 137/354 (38%), Gaps = 45/354 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+AI + + +S DSR I + F + G DG F A+++GA Sbjct: 5 LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGAC 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVA--ARLRSKATIIAITGSV 117 +++ SL P D V+ + KLA + S+ +I ITG+ Sbjct: 65 AAIISKK-----ASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-------------YNNHIGVPLTLA-RMPVD--VD 161 GKTTT ++ +S+ A G+ Y VPL R V V+ Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVE 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 +G E+ L + R + A+ T ++ HL +E AKA +F ++ Sbjct: 180 YGAMEVSSHALSQNRVAG--CDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDD 237 Query: 220 TGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G +N DD + +L + + K ++ +N+ + + S M+ G Sbjct: 238 DGPRSVINIDDKWGSILAKELN----KKCWTCSLKENSQIREKPDLYISNLQIMQDGYMG 293 Query: 279 KSMEVVHHG------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 K G IG NML +GI+ ++ ++AL+ F GR Sbjct: 294 KLHTPFGVGNFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGR 347 >gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501] gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501] gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM 4166] Length = 485 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 26/258 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT +L A + T+ IG LT A + + + Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGSSRYLIA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H+S + G ++ E L G L Sbjct: 173 EADESDASFL-HL-QPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVLCV 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286 DD + + +G T ++G S++AD + +Q +++ V G + ++V H Sbjct: 231 DDPVVREIIPQ---IGRPTT-TYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLDVSVH 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + D + ++ L+ F G G+R++ ++ G L+ Sbjct: 287 MPGNHNVLNALATIAIATDEGIDDEAIVQGLAEF---AGVGRRFQVYGNLPVDGGSVMLV 343 Query: 343 DESYNANPASMKAAISVL 360 D+ Y +P + A I + Sbjct: 344 DD-YGHHPREVAAVIKAV 360 >gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL N1-067] Length = 491 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 96/425 (22%), Positives = 161/425 (37%), Gaps = 45/425 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + P V+ I+ DSR + F I G DGH F A + GA Sbjct: 3 LNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 V+ + ++IPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AVIAEKPI-----EVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFELG 168 ++ + + IG+ IG P +L V + E+ Sbjct: 118 LVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222 L + R + +AV ++ HL +EE A AK+ +F L Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD ++ + A + +FG +NADF+ + S S ++ + Sbjct: 236 AVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFDLTTPAGKFK 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AI + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAG--QDFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D Y+ P + ++VL I R V+G C G+ + +A++ Y + Sbjct: 350 D--YSHTPDGL---LNVLQTIDEFANNRVFVVVG--C-GGDRDKGKRPQMAKIAVQYATN 401 Query: 403 HVWLS 407 V+ S Sbjct: 402 PVFTS 406 >gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] Length = 501 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 85/378 (22%), Positives = 147/378 (38%), Gaps = 48/378 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + +AF A G DG ++ A+ +GA V+V D G + + G Sbjct: 26 LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVEAD-----GLQAFDLSG-- 78 Query: 90 DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSI----KKT 136 D + +L L A L + ++A+TG+ GKTTT L ALS + + Sbjct: 79 DRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTG 138 Query: 137 YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELGMSHLGEIRFLTH 180 A +G+ +GVP L R D + S +G + Sbjct: 139 CALVGTLG--VGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLD 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK 238 + +A+ T HL ++ AKA++F+ GL T +N DD+ L A+ Sbjct: 197 GSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLP---TAVVNIDDAHGARLWAR 253 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++S A Q + E V G S+ + +G + N+L Sbjct: 254 LQGRAMD-VWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLG 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L ++ A+ A + P GR ++ + + L+ Y P +++ A+ Sbjct: 313 VLAALRCLGLTLEEAVAACAHLEPVPGRMQQ----IVKPGQPLVAVDYAHTPDALEKALR 368 Query: 359 VLSQISPHGEGRRIAVLG 376 L + +G+ V G Sbjct: 369 ALQPAARQRQGKLWCVFG 386 >gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes M1 GAS] gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS5005] gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus pyogenes M1 GAS] gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS5005] Length = 452 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella vaginalis AMD] gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella vaginalis AMD] Length = 533 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 31/292 (10%) Query: 49 PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 P D HDF K +V T + S +IPV +V A + R Sbjct: 62 PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSNR 119 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 A I ITG+ GKT+T EM + L++ +G +IG ++ A + + D Sbjct: 120 TNKPAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAVG----NIGKSVSHAALECEHDAL 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 EL L T + A IT IA HL G+E A K+++F ++K + Sbjct: 176 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK-ALV 230 Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSM 281 + D+ +L A G K I ++ G+ K+ + ++ W + S + +G Sbjct: 231 YNAQDERVSKLADCAQVADGCKKIGFTLGEPKDGEIGVKDGW--IVDNSGVAGGTKGTLK 288 Query: 282 EVVH----------HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 +V G Y H+ + L L + LT DVD++++AL F P Sbjct: 289 PIVELRELKHLCEPDGSVYPHLLADALTALALSLGLTGDVDSSVRALREFTP 340 >gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 490 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F A ++GA ++ D +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDT--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia R551-3] gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas maltophilia R551-3] Length = 502 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 158/385 (41%), Gaps = 43/385 (11%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+P LL A+ GH + G+ +DSR++ P AF AI G G F+ Sbjct: 1 MSPSMLLSQLLPDVALAGHDP------VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54 Query: 59 HAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 A GAG ++ ++ A + ++++P G+ +GA+ A R+ A ++ +T Sbjct: 55 QARAAGAGAILFEPPAPAELPAPVDAIAVP--GLRARMGAMADQFHGAPSRAMA-MVGVT 111 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL---ARMPVDVDF 162 G+ GKT+T ++L A + IG+ + PL L A + D Sbjct: 112 GTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDA 171 Query: 163 GIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EG 216 G + M SH L + R V +AV T + HL + +AKA +F G Sbjct: 172 GARAVAMEVSSHALDQGR--VDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPG 229 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L+ +N DD+F L A A G++ I S + +A + + E+ Sbjct: 230 LKAA---VINLDDAFGRQLFAGLPA-GVQPIGLSSRGATDAIVRAEALQLDGRGIAFELA 285 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + G+ V +G N+L G + + + LS P RG+ R Sbjct: 286 IDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPI--RGRMNRLGGE 343 Query: 336 QGFFTLIDESYNANPASMKAAISVL 360 G T++ + Y P +++ A+ L Sbjct: 344 DGLPTVVVD-YAHTPDALEQALDSL 367 >gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] Length = 509 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/371 (22%), Positives = 143/371 (38%), Gaps = 32/371 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ + +SR P F AI+G DGH++I AV+ GA ++V ++ + V Sbjct: 25 VSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVRCGAKVIVCEKEVTMPPEITVVRVE 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 LG L + A R +A+ G+ GKTT +L + + +G+ N Sbjct: 85 NGRRTLGLLARNFYADPSRC-LVAVAVMGTNGKTTVTYILESIFQAAGFSCGVLGTVNYR 143 Query: 145 ---------NHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 N L L R+ + VD G+ L SH ++R + + + T Sbjct: 144 YPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLVAEVSSHAVDLRRIDD-CDFDLGIFTN 202 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTG------TIFLNYDDSFFELLKAKSHALGIK 245 + HL +E AK F + G + +N DD + + L ++ I Sbjct: 203 LTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHRYAMAVNADDPWGKRLIRETGE--IS 260 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG + AD + + + E+ + S +V IG N+L + Sbjct: 261 RPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMSFDVDTALIGKFNLYNVLAAVSASVA 320 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++ + + + GR ++ + F +D ++ + A VL +SP Sbjct: 321 LRVPIEAIRRGVRAMNAVPGRLEKVSGSTQPDVF--VDYAHTDD-----ALRRVLQSLSP 373 Query: 366 HGEGRRIAVLG 376 GR I V G Sbjct: 374 FKRGRIITVFG 384 >gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS6180] gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes NZ131] gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS6180] gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes NZ131] Length = 452 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] Length = 495 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 154/384 (40%), Gaps = 47/384 (12%) Query: 22 VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 +PQ ++G+ +DSR + P +AF A+ G G FI A +GA ++ Sbjct: 14 IPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGV 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132 S+ +I V G+ LGA+ A R S+A T++ +TG+ GKT+T ++L A Sbjct: 74 SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHC 128 Query: 133 IK-KTYAC----IGSYNNHIGVPLT----------LARMPVDVDFGIFELGM---SH-LG 173 + ++ C +G Y+ + T LA++ D G + M SH L Sbjct: 129 LGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLR---DEGAQAVAMEVSSHALD 185 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-F 232 + R V + V T + HL +E +AKA +F + + +N DD F Sbjct: 186 QGR--VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAV-INVDDPFGL 242 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 LL + + + G + +AD + + ++ + V +G Sbjct: 243 RLLHGLAKGMRRVGVSVCGHT-DADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFN 301 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L G++ L + LS P GR R Q + Y P + Sbjct: 302 VDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVV---DYAHTPDA 358 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + VLS +S H GR I V G Sbjct: 359 LG---QVLSSLSSHVCGRLICVFG 379 >gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus somnus 2336] gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus 2336] Length = 436 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 146/356 (41%), Gaps = 60/356 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GK+T +T +S + K +IG+P L + D D + EL Sbjct: 108 IIAITGSNGKST----VTTLVSEMAKEDGLKVGIGGNIGIP-ALELLQQDYDLYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A I I+ H+ + IE+ AK I+E ++ +N +D Sbjct: 163 FQLET----TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRA---VINAED 215 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHH 286 + +K+ +FG+S+ AD+ L+ + +Q M + L M++V Sbjct: 216 VL-------TTTEDLKSPITFGESQ-ADYWLK--TENGKQYLMAKERLILPCDEMKLV-- 263 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDES 345 G H N L S L VD + A+ K G R++ A + I++S Sbjct: 264 --GRHNYMNALA----ASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDS 317 Query: 346 YNANPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 N S AA++ L + G+G+ D +E+ +L N Sbjct: 318 KATNVGSTVAALTGLYVANKLHLLLGGDGK------------------SADFSELATLIN 359 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 H++ F K+ S+ +TM+ I+ +L GD+V++ S +C Sbjct: 360 QPHIYCYCFGQDG-KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL--SPACA 412 >gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium ferrooxidans DSM 13031] gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium ferrooxidans DSM 13031] Length = 465 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 18/139 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHIGVP---LTLA 154 A L +A ++ ITG+ GKTTT ++ I + + +Y +IG+P + L Sbjct: 99 AALFCRARVVGITGTDGKTTTATLI----HRICEADGLLHNYRAFSVGNIGIPFSSMVLE 154 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213 P DV + EL L RP IAVIT I P HL+ + G + A+AK I Sbjct: 155 MHPRDV--AVVELSSYQLERCVAF----RPDIAVITNITPDHLARYEGDMHRYAAAKFRI 208 Query: 214 FEGLEKTGTIFLNYDDSFF 232 ++ + T+ N DD Sbjct: 209 YQNQGERDTLIYNDDDPLL 227 >gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS9429] gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus pyogenes MGAS2096] gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS9429] gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus pyogenes MGAS2096] Length = 452 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 166 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 222 LNANQEISATLAKTTKA----TVIPFSTQKVVD 250 >gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] Length = 489 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 90/375 (24%), Positives = 148/375 (39%), Gaps = 37/375 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + + DSR I P + F A G DG D+I A+ K A V + +P+ Sbjct: 22 LIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVFYEANQYNPSIQTKVPL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +++ + + +AAR + II ITG+ GKT+ + + AL S IG Sbjct: 82 IPFENLQHRIGE--IAARFYDDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIRCGVIG 139 Query: 142 SY-----------NNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 + ++ P+ L + ++ G + M SH R + V+ I Sbjct: 140 TLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEG-VQFDI 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAK-SHALG 243 AV T ++ HL +E A AK +F+ GL TG + N DD+ + + A H L Sbjct: 199 AVFTQLSRDHLDYHGDMENYARAKELLFQQPGLH-TGVV--NCDDALGKRIIAHYRHQLT 255 Query: 244 IKTIYSFG-KSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + G K + Q Q + +EVQ G N+L L Sbjct: 256 LVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLLAVLS 315 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + D A+ LS GR + ++ I Y P +++ A++ L Sbjct: 316 VLCLCEIPFDKALLELSQLRNVPGRMQ----VVDSQRQPQIIVDYAHTPDALEKALTALR 371 Query: 362 QISPHGEGRRIAVLG 376 + H +GR I V G Sbjct: 372 E---HCQGRLICVFG 383 >gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] Length = 488 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 92/397 (23%), Positives = 152/397 (38%), Gaps = 47/397 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + + I V + DSR A AF A+KG DGH FI A+ Sbjct: 1 MKNLKDILYKVSANKIFGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLFIDKAINL 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 GA +VVV D + V D AL +A SK +I +TG+ GKTT Sbjct: 61 GA-IVVVCEDFPKEQKE-GVTYIQVSDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTT 118 Query: 122 TKEML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165 +L T+ + + + + + + + L +M VDF Sbjct: 119 VASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + + R T + V T ++ HL + K F+ L K+ + Sbjct: 179 EVSSHGIHQKR--TEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDTLPKSAFVLA 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KS 280 N DD + S A IK Y+ + AD++++ +E QL G Sbjct: 237 NIDDKNGRFMLQNSKA--IKKTYALKTA--ADYKVK---------ILEKQLSGTLIALDG 283 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFF 339 EV IG N+ + +L + ++ L++ E R+ ++Q G Sbjct: 284 TEVWIKLIGVFNIYNVTAVIATAELLGLE---KLEILTILSALESVSGRFEYVISQDGVT 340 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y P ++K + ++ I E + I VLG Sbjct: 341 AIVD--YAHTPDALKNVLETINDIKIGAE-KVITVLG 374 >gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] Length = 527 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 19/233 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V G++ DSR++ P + + A+ G + G DF + AV GA V+ + A + G +++PV Sbjct: 59 VTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAARLAGRVAVPV 118 Query: 86 FGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 DD L +A V T++ +TG+ GKTTT +L L + T +G+ Sbjct: 119 LVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTTGLLGTV 178 Query: 144 NNHIG---VPLTLARMPVDVDFGIFELGMSHLGE----IRFLTHLVRPHI--------AV 188 IG VP ++ P D M G + +H + H A Sbjct: 179 QTRIGGTVVP-SVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVDALRFTGAA 237 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 T ++ HL +E+ +AKA +FE + DD L + + A Sbjct: 238 FTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKDAVICVDDDWGRRLARQRPDA 290 >gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM 2075] gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM 2075] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 26/296 (8%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++ A+I L IPV ++L L +L +A+ G+ GKTT ++ L Sbjct: 78 NPEVAAAI-ELQIPVIPRAEMLAELMRLKYG---------VAVAGAHGKTTCTSLVATLL 127 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 ++ G + + V L + + G E ++ E + + P + V+T Sbjct: 128 AA--------GGLDPTVVVGGKLGALGTNAVLGRGEFLVAEADESDGSFNRLSPVVVVVT 179 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H+ ++ + + A E + G + DD L + K + ++ Sbjct: 180 NIDREHMDHYGSDQALDEAFVEFMNKVPFYGAAIICLDDPRVAALIPRVR----KRVITY 235 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTAD 309 G+S ADF+ R+ ++ + QG+++ V + G H N L L + L Sbjct: 236 GQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGVA 295 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A+ A + F G G+R L+ + Y +P ++A + P Sbjct: 296 MPVAMSACAGFG---GVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWP 348 >gi|308235556|ref|ZP_07666293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gardnerella vaginalis ATCC 14018] gi|311114356|ref|YP_003985577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella vaginalis ATCC 14019] gi|310945850|gb|ADP38554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella vaginalis ATCC 14019] Length = 525 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 + + A + ITG+ GKT+T EM + L++ +G +IG ++ A M + D Sbjct: 112 KTNNPAPWVGITGTNGKTSTTEMTSEMLTACGFDAPAVG----NIGKSVSHAAMESEHDV 167 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 EL L T+ +R A IT IA HL GIE A K+++F G++K Sbjct: 168 LCVELSSFQL----HFTNSMRLDCAAITNIAADHLDWHGGIEAYAKDKSKVFNGVKK--A 221 Query: 223 IFLNYDDSFFELLKAKSH 240 + N DS L A + Sbjct: 222 LVYNAQDSRVSELAANAQ 239 >gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum] Length = 486 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 38/337 (11%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140 IPV D+LG L +T + I G+ GKT+T M +A+ + + ++A Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G N + + G E+ ++ E +P++AV+T + P HL F Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259 E + + G + + +D L +S GIKT+ Y + A + Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTRDAVQAHPE 263 Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + +E + + + G+ + V+ G HM N L ++ DVD Sbjct: 264 VPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323 Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAI-SVLSQISPHGE 368 ++ LS F G +R+ A+ G F I + Y +P + A + +++ G+ Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLRRCATRVKAAGK 380 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 GR I + + F + AE LSL + + V Sbjct: 381 GRVIVAF--QPHLYSRTMEFQKEFAEALSLADAAVVL 415 >gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus somnus 129PT] gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus 129PT] Length = 436 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 146/356 (41%), Gaps = 60/356 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIAITGS GK+T +T +S + K +IG+P L + D D + EL Sbjct: 108 IIAITGSNGKST----VTTLVSEMAKEDGLKVGMGGNIGIP-ALELLQQDYDIYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A I I+ H+ + IE+ AK I+E ++ +N +D Sbjct: 163 FQLET----TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRA---VINAED 215 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ---LQGKSMEVVHH 286 + +K+ +FG+S+ AD+ L+ + +Q M + L M++V Sbjct: 216 VL-------TTTEDLKSPITFGESQ-ADYWLK--TENGKQYLMAKERLILPCDEMKLV-- 263 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDES 345 G H N L S L VD + A+ K G R++ A + I++S Sbjct: 264 --GRHNYMNALA----ASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDS 317 Query: 346 YNANPASMKAAISVLSQISP-----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 N S AA++ L + G+G+ D +E+ +L N Sbjct: 318 KATNVGSTVAALTGLYVANKLHLLLGGDGK------------------SADFSELATLIN 359 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 H++ F K+ S+ +TM+ I+ +L GD+V++ S +C Sbjct: 360 QPHIYCYCFGQDG-KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL--SPACA 412 >gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus polymyxa SC2] gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus polymyxa SC2] Length = 473 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165 KA II ITGS GKTTT + L + G +IG PL A + D + + Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAG----NIGTPLCEAAVDAKSDEWMVV 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L + +P +A + +A HL G+E+ ++KA +F + T + Sbjct: 167 ELSSFQLKGTKDF----KPAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVV 222 Query: 226 NYDDSFFELL 235 N+DDS L Sbjct: 223 NWDDSVCREL 232 >gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] Length = 356 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 13/193 (6%) Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKS--HALG 243 A T + HL ++E +AK +FE L G T LN D + + S LG Sbjct: 67 AGFTNLTQDHLDYHGTMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSAFASASIMAGLG 126 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G+ D L + E + + ++G+ +V+ G A N L+ G+ Sbjct: 127 VMGVGERGR----DLTLLARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLC 182 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D D I AL + +GR +R G + Y P ++ +VL+ + Sbjct: 183 IAGGEDPDRVIPALELIQGAQGRLQRIPGGARGGEVYV---DYAHTPDGLE---TVLNAL 236 Query: 364 SPHGEGRRIAVLG 376 PH GR I V G Sbjct: 237 RPHATGRLIVVFG 249 >gi|225009953|ref|ZP_03700425.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C] gi|225005432|gb|EEG43382.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C] Length = 318 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 8/136 (5%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++++ AAR ++A +I ITGS GKTTT + L S K A G+ + A Sbjct: 90 IDEVEFAARY-TEAVLIGITGSNGKTTTTMLTHHILKSDGKAVAMGGNIGVSFAKLVYEA 148 Query: 155 RMPV--DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 +P +D+ + EL L I RPHIA+IT I+P HL + G E A+ Sbjct: 149 HLPEAEKIDYYVLELSSFQLDNIENF----RPHIAIITNISPDHLDRY-GYEMDRYTAAK 203 Query: 213 IFEGLEKTGTIFLNYD 228 + + T +L YD Sbjct: 204 FRISMNQLPTDYLIYD 219 >gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] Length = 508 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 81/401 (20%), Positives = 158/401 (39%), Gaps = 52/401 (12%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR ++ FFA+ G +++G FI A+Q+G+ ++V D+ +++ Sbjct: 33 GLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDIDFYDSNVTYIKVDP 92 Query: 89 DDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG----- 141 ++ ++ A K II +TG+ GK++ + L S+ I Sbjct: 93 CNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLE 152 Query: 142 -------------SYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHL-VRPHI 186 S + L L++M +V++ I E SH + R L + + Sbjct: 153 DGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIE-STSHGLDDRTSRLLDIEYSV 211 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIK 245 AV+T I+ HL ++ AK +F G +N DD+ F + I Sbjct: 212 AVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHGGFGIINMDDNHFSVFMN-----SIN 266 Query: 246 TIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 Y++ K++ ADF + K + Q+ E H+ Y N+ + + + Sbjct: 267 RTYTYSLKNEKADFFISKINE---------QMGFTEFEFYHNKTKYAARVNLTGSFNVEN 317 Query: 305 ILTA--------DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 ++ A +VD + + + + G+ Q F ++D Y P + Sbjct: 318 VMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLIVD--YAHTPGAFLKM 375 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + +++ + R I+V G E L + ++A+ S Sbjct: 376 FPIFKRLA---KKRLISVFGSAGERDILKRRLQGEIADEYS 413 >gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus pyogenes M49 591] Length = 438 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 96 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 151 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 152 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 207 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 208 LNANQEISATLAKTTKA----TVIPFSTQKVVD 236 >gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] Length = 499 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 106/410 (25%), Positives = 166/410 (40%), Gaps = 63/410 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ DSR I F AIKG DGH +I A+++GA VV+ + G + Sbjct: 23 LTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGAVAVVLAQERTLPPG---VAWV 79 Query: 87 GVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VDD AL +L AAR K +I +TG+ GKTTT ++ L + + +G+ Sbjct: 80 RVDDTRLALGQL--AARFYDYPSRKLRLIGVTGTNGKTTTTHLIQAILEAGGRPAGLVGT 137 Query: 143 YNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IA 187 N +G + A P +D M L + R + V H +A Sbjct: 138 IGNRLGDRVLPAEHTTPESLDLQHLLYQMVSL-QARAVVMEVSSHALALHRVAGTEFDVA 196 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIF--LNYDDSFFELLKAKSHAL 242 V T + HL +E+ + KA +F+GL+ K G + +N DD + L AL Sbjct: 197 VFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPKYAVINGDDPYGSRLA----AL 252 Query: 243 GIKTIYSFG-----KSKNADFQLRKWKQCSEQSW------MEVQLQGKSMEVVHHGIGYH 291 + ++G + + D L S +W ME++L G+ Y+ Sbjct: 253 TPVPVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEAAMELRLTGR----------YN 302 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + N L L + D AI+AL F GR + R Q F ++D Y P Sbjct: 303 I-YNALAALAVALQEGIDPQVAIRALGRFKGVPGRLE--RVDQGQPFTVVVD--YAHTPD 357 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++ + Q++ GR + V G + + A LS Y+I Sbjct: 358 GLENVLRAARQVT---RGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSI 404 >gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum TLS] gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum TLS] Length = 465 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 108 ATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFG 163 A II ITG+ GKTTT +L A +K + N IG+P + + +P D Sbjct: 108 ARIIGITGTDGKTTTATLLHRICAAEGERKGFRAFSVGN--IGIPFS-SEVPGMTAADIA 164 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 + EL L E F RP+IAV+T + P H+ + G IE A+AK I T Sbjct: 165 VLELSSYQL-EACFD---FRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDT 220 Query: 223 IFLNYDD 229 + N+DD Sbjct: 221 LIYNHDD 227 >gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma proteobacterium HTCC2143] gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma proteobacterium HTCC2143] Length = 477 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 54/286 (18%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ A + + T+ IG N G Sbjct: 122 IAVAGTHGKTTTTSLIASVFAEARLDPTF-VIGGLLNSAGT------------------- 161 Query: 169 MSHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 + LGE RFL HL +P ++V+T I H++ + G ++ E Sbjct: 162 NAQLGESRFLVAEADESDASFLHL-QPMVSVVTNIEADHMATYDGDFNKLKKTFVEFLHN 220 Query: 217 LEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L G + DD ELL A A ++G S +ADF + + ++ V+ Sbjct: 221 LPFYGMAVMCIDDDVVRELLPAVGRA-----TLTYGFSHDADFSIVDVNKLGLRTSFSVK 275 Query: 276 LQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC- 332 G K +++ + G H N + + + D + + + F EG G+R++ Sbjct: 276 RPGKHKQIDITINMPGDHNVLNATAAIAVATDEGIDDEAIQRGIEKF---EGVGRRFQVY 332 Query: 333 ---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + +G L+D+ Y +P ++A IS Q P RR+ ++ Sbjct: 333 GEFDIEEGSVLLVDD-YGHHPTEVEATISAARQAWPD---RRLVMV 374 >gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] Length = 485 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 24/255 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASI 78 G P V GI+ DSR + P FFA++G +G+ F A++KGA VV ++ + Sbjct: 15 GGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKGASAVVTDSRKWFEKL 74 Query: 79 GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + PV V++ AL A + + + I+ +TG+ GKTTT +L AL+ + Sbjct: 75 SAAGKPVLLVENSRKALATAAANLYGNPQKELKILGVTGTNGKTTTTFLLFKALNRLGVK 134 Query: 137 YACIG--SYNNHIGVPLTLARMPVDV--------------DFGIFELGMSHLGEIRFLTH 180 IG S+ + + + P V +F + E+ L + R H Sbjct: 135 AGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVVCEVSSHGLHQHR--VH 192 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + A+ T + P HL +EE AKA++F L K + N DD + L A Sbjct: 193 GIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFR-LSKLSVV--NRDDPYGTTLSALRA 249 Query: 241 ALGIKTIYSFGKSKN 255 G KT+ KS+N Sbjct: 250 VNGGKTVTYGKKSRN 264 >gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] Length = 487 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 64/386 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR + P + F A+ G DG I A+ KGA V + + P+ Sbjct: 17 LIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDAPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ AVA R + + +I +TG+ GKT+ +++ AL + + +G Sbjct: 77 IAVKGLAAQLS--AVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + + + V TLA + V ++ L + + F Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGF--- 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAK 238 IAV T ++ HL +E A+AKA++F GL +N DD F L + Sbjct: 192 ----DIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLR---CRVVNLDDDFGRRLAGE 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--------IGY 290 + T YS S + C E + + ++ + V HG +G Sbjct: 245 EQYSELIT-YSLTDSS-------AFLYCREARFGDAGIE--AALVTPHGEGLLRSPLLGR 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +G + L + ++ L GR +R L G L+ Y P Sbjct: 295 FNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQR----LGGGDKPLVVVDYAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLG 376 +++ VL + PH R + + G Sbjct: 351 DALE---KVLEALRPHAAARLLCLFG 373 >gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] Length = 509 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 35/253 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+AI + + +S DSR I + F + G DG +F A+++GA Sbjct: 5 LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGAC 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVA--ARLRSKATIIAITGSV 117 +++ SL P D V+ + KLA + S+ +I ITG+ Sbjct: 65 AAIISKK-----ASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGS-------------YNNHIGVPLTLA-RMPVD--VD 161 GKTTT ++ +S+ A G+ Y VPL R V V+ Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVE 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 +G E+ L + R + AV T ++ HL +E AKA +F +E Sbjct: 180 YGAMEVSSHALSQNRVAG--CDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIED 237 Query: 220 TGTI-FLNYDDSF 231 G +N DD + Sbjct: 238 GGPRSVINIDDKW 250 >gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium modesticaldum Ice1] gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium modesticaldum Ice1] Length = 461 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 25/269 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M+ + L A I +G + G F + Sbjct: 109 IAVAGTHGKTTTSAMIGLMLEQCGLDPAII------VGGEIREIEGNAKWGQGDFMAAEA 162 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + FL + P +AVIT I HL ++ E I A + E L G + L DD Sbjct: 163 DESDRSFLK--LSPWMAVITNIEADHLDHYQSFEAIVEAFYQFTERLSGDGILLLCADDP 220 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----QLQGKSMEVVHH 286 LL+ + + + + ++G AD++ + S ++ + G+ M V Sbjct: 221 ---LLQEMAQRVTARRVVTYGMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVP- 276 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + ++ A ALS F G G+R++ +++D+ Y Sbjct: 277 --GEHNMSNALAAVACADLIGIPFAAAAAALSRFG---GVGRRFQRMGEAKGVSVVDD-Y 330 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P +KA ++ Q P GR +AV Sbjct: 331 AHHPTEVKATLAAARQTQP---GRLVAVF 356 >gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] Length = 498 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 88/397 (22%), Positives = 153/397 (38%), Gaps = 64/397 (16%) Query: 20 GIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 G+VP + I +DSR I F A+ G Y G F+ A++ A V+ + D Sbjct: 15 GLVPSNEIYTDPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDED 74 Query: 74 ----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + IP+ +D L+K +T+IA+TG+ GKT+ Sbjct: 75 GFNFAKKIFTKIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANF---- 130 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRF--LTHL---- 181 ++ + C+G +IG + +++ E + H L EI +TH Sbjct: 131 ---TRQIWECLGKKAVNIGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEA 187 Query: 182 ------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYD 228 V A T HL + ++K +FE L G++ +N D Sbjct: 188 SSHGLDQKRLDGVYLTAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMD 247 Query: 229 DS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQ---SWMEVQLQGK 279 D +E+ K + + I + GK+ N D L+ + +Q SW + +++ Sbjct: 248 DPKGLYIYEVAKLRG-----QDIITVGKN-NCDLTLKNCTFDATGQQILFSWRD-EIKSV 300 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +++ IGY A N+L +V + LS GR + + G Sbjct: 301 RLDL----IGYFQAMNILQAAALVIACGEQPNDVFDTLSELRTVSGR-MQLAAKRSNGAS 355 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y P +++ A L + PH GR + ++G Sbjct: 356 VFVD--YAHTPDAVETA---LKAMRPHVMGRLLIIVG 387 >gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes] Length = 439 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT M+ L++ ++ G +IG P + + + + D + Sbjct: 97 SEAPIIGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASKVVQKAIAGDTLV 152 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + + RPHIAVIT + P HL E+ +AK I + ++ + Sbjct: 153 MELSSFQLVGV----NAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLI 208 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 LN + L + A T+ F K D Sbjct: 209 LNANQEISATLAKTTKA----TVIPFSTQKVVD 237 >gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae V52] gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio cholerae O395] gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae RC27] gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae V52] gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O395] gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae RC27] Length = 440 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 109/447 (24%), Positives = 185/447 (41%), Gaps = 85/447 (19%) Query: 32 IDSRSIAP-QEAFFAIKGPHYDGH--DFILHAVQKGAGLVVVN------TDMVASIGSLS 82 ID+R I P QE + H G +++L+A LVV N T + + + Sbjct: 38 IDTREIPPGQEQLSSDVALHRGGWNLEWLLNA-----DLVVTNPGIALATPEIQQVLAAG 92 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV G ++ +IAITGS GK+T + L+ L++ A +G Sbjct: 93 IPVVGDIELFA----------WHVDTPVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG- 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IGVP L + DV+ + EL L T ++ A ++ H+ + G Sbjct: 141 --GNIGVP-ALDLISPDVELYVLELSSFQLET----TSSLKLKAAAFLNLSEDHMDRYQG 193 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-- 260 + + AK IF+ E T +N DD+ HA ++ + +FG + A F L Sbjct: 194 MGDYRQAKLRIFDHAE---TAVVNADDT----QTFPDHAAHLQVV-TFGVEQAAQFSLAQ 245 Query: 261 ---RKWKQCSEQSWM---EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 R++ +++ M E+ L +G H N+L L ++ + A+ Sbjct: 246 HQGREYLFARDEAVMACAELSL-----------VGRHNVTNVLTVLALLDSAGVNFRLAL 294 Query: 315 KALSVFHPKEGRGKRYRC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 AL K G +RC A N G +++S N AS AA+S L EG+ Sbjct: 295 DAL-----KSYTGLTHRCQVVADNHG-IKWVNDSKATNVASTLAALSGLKI-----EGQL 343 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 ++G + + + + LA VL+ + L F V +P + ++M+ Sbjct: 344 YLLVGGVGKGADFTP-----LAPVLATLPVQ---LCCFGVDG-HQFMPLHPSARFYDSME 394 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + I+ L GD+V++ S +C + Sbjct: 395 SIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411] gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411] Length = 460 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 78/319 (24%), Positives = 135/319 (42%), Gaps = 27/319 (8%) Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKAT 109 Y GH L +++ LVVV++ ++ + +I + D + + + + + A L + + Sbjct: 58 YLGHS--LSNIEEDVDLVVVSS----AVKNDNIELIQADKLNIPTIKRYQLLAHLVNNSN 111 Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ GS GKTTT + L + A IG +I + + + ++ I E Sbjct: 112 SIAVAGSHGKTTTTSLSASLLKNANLDPTAIIGGKLRNINNNVIIGK----CNYLIVEAD 167 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G FL L+ P I ++T I HL + E + K ++ ++ + + +N D Sbjct: 168 ESDGG---FL--LLNPKIGLLTNIDNDHLGFYGNFE---NEKVAFYDFMDNSEKLIINID 219 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287 D + K S + T YS KSK AD + + S ++ K +E + Sbjct: 220 DPIIKQWKNLSKRQNLLT-YSI-KSKKADVYAYDIQTNAAYSIFSIKTPTKKIEQIKLKI 277 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG H N L + + IL D K LS F EG +R+ N + D+ Y Sbjct: 278 IGTHNISNALAVVCLAEILEIGEDIIRKTLSEF---EGVDRRFTYVGNYRNLKVYDD-YA 333 Query: 348 ANPASMKAAISVLSQISPH 366 +P ++ + IS + Sbjct: 334 HHPTEIRETLKAAKLISKN 352 >gi|256845954|ref|ZP_05551412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 3_1_36A2] gi|256719513|gb|EEU33068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp. 3_1_36A2] Length = 432 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 173/427 (40%), Gaps = 62/427 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H DG +F + K G+ N V + I + +D++ Sbjct: 32 DKKAMTSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 78 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + +++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 79 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLS 131 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P+I++I + P H+ + +E K Sbjct: 132 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKF 187 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQC-SEQ 269 I + + N DD ++ + A IK S K K AD ++ K C E Sbjct: 188 NITKNQTEDLYFIENIDD-----VEIEKRAEQIKAKKISVSKIKKADIFVKNDKICHGEN 242 Query: 270 SWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S ++V +L K G H +N L + IL D + + L + P E R + Sbjct: 243 SIIDVDKLSLK---------GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTE 293 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N G I++S N S K AI I + G + +L+ Sbjct: 294 LF---FNYGKVKFINDSKATNVDSTKFAI--------QANKNSILICGGYDKGVDLAP-- 340 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 LAE++ NI V+L G ++ L + + Y + + +++SL D Sbjct: 341 ---LAEMIK-ENIKEVYLIGVIADKIEKELKK---IGYEDNKIHKLVNLENSLQDMKKRF 393 Query: 449 VKSSNSC 455 K SN Sbjct: 394 TKESNEV 400 >gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 486 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 33/367 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+ +S++ F IKG DGH++I A+Q GA LVVV+ S I Sbjct: 24 ITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIEGKIDYI 83 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + AL ++ +I +TG+ GKT+T M+ L + + IG+ Sbjct: 84 KTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIK 143 Query: 145 NHIGVPLTLAR--MPVDVDF----------GIFELGM---SHLGEIRFLTHLVRPHIAVI 189 N IG A+ P D G+ + M SH E+ F + + V Sbjct: 144 NMIGSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVVMEVSSHSLEL-FRVYDCDFDVGVF 202 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E +AK ++F G+ K + N DD + K + Sbjct: 203 TNLTQDHLDFHGTMENYFAAKLKLF-GMSKKRVV--NADDMW-----GKRIIEMYPDSVT 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + K +A R K ++ E+ G+ E+ + G N L L Sbjct: 255 YAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACCISLGIK 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D K L GR + NQ F +ID Y P + + +++++ +G Sbjct: 315 LDDIKKGLENLKAVPGRFEIVES--NQKFTVVID--YAHTPDGLLNLMKTVNEVT---DG 367 Query: 370 RRIAVLG 376 R++ + G Sbjct: 368 RKVLLFG 374 >gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD2M] gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD2] gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD2] gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD2M] Length = 465 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRTPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY + G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G +A DAL R++ + ET+D L + DGDVV+ + Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus oleovorans Hxd3] gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus oleovorans Hxd3] Length = 459 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 21/172 (12%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV G ++ +AAR +K + A+TG+ GKTT +L L + + G Sbjct: 96 IPVMG---------EMELAARFVTK-PVAAVTGTNGKTTVTTLLGDMLKASGRQVFVGG- 144 Query: 143 YNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +IG PL A + D + E+ L + RPH+AV+ IA HL+ + Sbjct: 145 ---NIGAPLIGFADKGENADMAVVEVSSFQLD----TSETFRPHVAVLLNIAEDHLARYV 197 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 +K IFE E +N D F +L+A K ++ GK+ Sbjct: 198 DFNAYVRSKGRIFENQEADDVAVINGAD--FHVLQASKGIRSRKLTFNAGKN 247 >gi|160897523|ref|YP_001563105.1| Mur ligase middle domain-containing protein [Delftia acidovorans SPH-1] gi|160363107|gb|ABX34720.1| Mur ligase middle domain protein [Delftia acidovorans SPH-1] Length = 1097 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 159/383 (41%), Gaps = 34/383 (8%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV V D+ L LA AAR R ++ ++A++G VGKT+T M+ L G Sbjct: 687 VPVLHVPDMEEGLRNLAQAARRRIQSPVVAVSGCVGKTSTLGMMRQCLQDGGDAR---GD 743 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA--------- 193 G L + + EL + L R L+ P I VIT ++ Sbjct: 744 ALLSQGTALQMINWSEASPCALLELPLQAL---RGDLPLIDPDILVITNLSINNTPHSGE 800 Query: 194 --PAHLSNFSGIEEIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHA--LGIKTI 247 P+ + G E A E+ E ++ G+ + D E HA +G++ I Sbjct: 801 SEPSGQAGLPG-ERKYEALQEVLEAMQHMHKGSALVT-DQDIGENPSVIEHAKRMGLRLI 858 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG NA + + + Q M G S++ G+HMA N L + L Sbjct: 859 -TFGPHCNAQVREMGFHNGNLQIGMGSLRLGISLQ----SDGHHMALNAQAALAALHALG 913 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +L+ + P G G+ L G L+D S + + SM AA S L ++PH Sbjct: 914 YAPAQVQASLAHWQPMIGAGQPQ--FLPSG-ICLLDHSLSNHLLSMTAAFSQLQSVAPH- 969 Query: 368 EGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 RR+ VL + + G+ S + + L ++ V L G + L AL +HV++ Sbjct: 970 VSRRLIVLAGI-QPGQASIDAAQLALEPLVRDAQARRVLLYGEPLRPLAAALGDLLHVNW 1028 Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449 + ++ L + + GD V++ Sbjct: 1029 YDDLNQLICSLLRTTHKGDTVLL 1051 >gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium bifidum S17] gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium bifidum S17] Length = 476 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 37/221 (16%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DS I F + P FIL A ++G IPV+ Sbjct: 47 DGIDWDSADIVMTSPVFNPRTP------FILEAQRRG------------------IPVYS 82 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 +V A +AR A + ITG+ GKT+T EM + L + +G +I Sbjct: 83 --EVELAWRLRVDSARTGRPAPWVGITGTNGKTSTTEMTSAMLCANGLVAPAVG----NI 136 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G ++ A + D D EL L T + A IT IA HL GIE A Sbjct: 137 GKAVSHAAVDPDNDALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYA 192 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTI 247 + K+++F + + + N DD L + +H A G + I Sbjct: 193 ADKSKVFRNVRR--ALVFNADDRRVSALASAAHTAEGCRRI 231 >gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] Length = 504 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 146/377 (38%), Gaps = 46/377 (12%) Query: 33 DSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR I FFA +G DG D+I A+ GA VV + ++P GV Sbjct: 27 DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEGFDWNPEWNVPHLGVMG 86 Query: 91 VLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143 L A AA A +IA+TG+ GKT+ + L +LS++ K A IG+ Sbjct: 87 -LKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLGVTV 145 Query: 144 --NNHIGVP----------LTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N GVP + L R+ + + S +G + + + + + Sbjct: 146 FVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPIDVGL 205 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T HL + +AK ++F+ GL+ LN DD + A +KT Sbjct: 206 FTNFTRDHLDYHHDMASYKAAKRKLFDWPGLKHA---VLNLDDPM-----GRELATALKT 257 Query: 247 IYSFGKS--KNADFQLRKWKQCS---EQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMT 299 S +NAD + K C S +E + S + IG A N+L Sbjct: 258 RISLTGYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGV 317 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG++ D A++ L P GR ++ +ID + P +M+ ++ Sbjct: 318 LGVLLAAGIHWDDAVRTLGDLLPPAGRMQQM--GGKNAPLVVID--FAHTPDAMEKGLAT 373 Query: 360 LSQISPHGEGRRIAVLG 376 L ++ G+ V G Sbjct: 374 LRHVANERNGKLWCVFG 390 >gi|56459548|ref|YP_154829.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR] gi|81363510|sp|Q5R0M0|MURC_IDILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56178558|gb|AAV81280.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR] Length = 490 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 102/424 (24%), Positives = 181/424 (42%), Gaps = 59/424 (13%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 +GA +VVV N ++VA+ L +PV ++L L R R IA+ G Sbjct: 81 EGASVVVVSSAIKADNAELVAA-HQLRVPVVRRAEMLAEL------MRFRHG---IAVAG 130 Query: 116 SVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 + GKTTT ++ +I + + IG N G L + + I E S + Sbjct: 131 THGKTTTTSLVASIFAEAGRDPTFVIGGLLNSAGSNARLG----NSKYLIAEADES---D 183 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 FL HL +P +A++T I H+ + G ++ E L G + DD Sbjct: 184 ASFL-HL-QPMVAIVTNIEADHMDTYEGDFNKLLDTYVEFLHNLPFYGLAVMCVDDPVVS 241 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHM 292 L + LG +T+ ++G S+ AD + +KQ + +S + +G K ++V + G H Sbjct: 242 DLIPR---LGRQTM-TYGFSEAADVRAIDYKQTASESCFTILRKGLKPLDVCLNLPGKHN 297 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + + + + D AIK S + EG G+R++ + G F + D+ N P Sbjct: 298 VLNALAAVAVATDEGIN-DEAIK--SALNKFEGIGRRFQ---HYGNFAISDKDSNKEPGE 351 Query: 353 M---------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401 + + ++ Q + G R V+ ++ + D VLS ++ Sbjct: 352 VMLVDDYGHHPSEVAATIQAAREGWPERRLVMAFQPHRYSRTRDLYEDFVNVLSQVDVLL 411 Query: 402 -SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 V+ +G ++ D +L RSI Y T+D + ++S L GD+++ + + Sbjct: 412 MLEVYSAGETPVSGADSRSLCRSIRQRGQIDPVYVATVDDMPEVLESVLAPGDLLLTQGA 471 Query: 453 NSCG 456 + G Sbjct: 472 GNIG 475 >gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 556 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 22/218 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGS 80 V+ ++ DSR F A+ G DGHD+I AV +G L++ V+ +A + Sbjct: 27 VSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGLAG 86 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++ D AL L A + + +I ITG+ GKTT +L ++S Sbjct: 87 EAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITGTNGKTTCAYLLEALIASGGGQPG 146 Query: 139 CIGSYN-NHIGVPLTLARM---PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRP 184 IG+ N + G + A P + + + E+ G++H+ ++ V Sbjct: 147 VIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRRVAGVEF 206 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 +A+ T ++ HL +E +AK +FE K G Sbjct: 207 DVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGA 244 >gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] Length = 532 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 84/381 (22%), Positives = 143/381 (37%), Gaps = 52/381 (13%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++GI DSR + + F G DGH F+ A ++GA ++V ++ IG V Sbjct: 24 IISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAVVIVATKEV--EIGESVKAV 81 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-- 141 V D L+ LA A R ++ ITG+ GKTTT +L S+ IG Sbjct: 82 VIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGTI 141 Query: 142 SYNNH-------------------IGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181 SY+ H + + R V V + L EI F Sbjct: 142 SYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDF---- 197 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDS----FFELL 235 +AV T + H+ + AK ++F + +N DD F L Sbjct: 198 ---DVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYFVSLG 254 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K + +FG K+AD + ++ + V+ ++E+ +G H N Sbjct: 255 NPKV------PVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYN 308 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L + + + A ++ ++ + GR + Q F ++D Y P ++ Sbjct: 309 ILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVE--LVDEEQPFAVIVD--YAHTPDALSR 364 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + + + P R I V+G Sbjct: 365 LLDTVRECGPR---RIITVVG 382 >gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] Length = 494 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR + F A+KG DG FI A++ GA V+ + G++ + Sbjct: 27 VQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASAIELGANAVIAESCEQHLAGTIEYIDT 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IPV + + L+ LA + II +TG+ GKTT +++ L I K A +G+ Sbjct: 87 IPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGTNGKTTITQLIAQWLELIGKKAAVMGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|229118178|ref|ZP_04247537.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3] gi|228665401|gb|EEL20884.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3] Length = 436 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis 89/1591] gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis 89/1591] Length = 447 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 27/224 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160 A L S A I+ ITGS GKTTT M+ L++ K G +IG P ++A+ Sbjct: 104 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCG----NIGYPASSVAQTATAE 159 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T RPHIAV+T + +H+ E+ +AK I + Sbjct: 160 DTLVMELSSFQL----MGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAE 215 Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + LN++ + L + K+ + + T+ + AD +L +G Sbjct: 216 DFVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLY--------------FKG 261 Query: 279 KS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + M+ G+ G H +N L T+ + +L D ++LS F Sbjct: 262 EYIMDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAF 305 >gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] Length = 489 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 148/366 (40%), Gaps = 27/366 (7%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P FFA+ G DG F+ A+ KGA + A I + + V Sbjct: 27 VTGLTADSRVVEPSNLFFALAGVKTDGARFVQEAISKGA--AAIVAASGAGISTDGVAVL 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 DD AL ++A A + A+TG+ GKT+ L + + A +G+ Sbjct: 85 RSDDPRLALARMAAAFFGPQPRVMAAVTGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVV 144 Query: 144 ---NNHIGV-----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 + G P+ L R+ ++ G+ M SH + R L ++ +A T Sbjct: 145 APGRSEYGSLTTPDPVALHRLLAELASEGVTHAAMEASSHGLDQRRLDGVML-SVAGFTN 203 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIYSF 250 + H+ +E+ +AK +F+ L G + + DD + E + G + + + Sbjct: 204 LGRDHMDYHPTMEDYMAAKMRLFDTLLPKGAPAVIFADDPWSEQAVEVAERAGAR-VLTV 262 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G+ K L++ + + EV L G+ E+ G N L+ G+ Sbjct: 263 GR-KGGFLSLKRVEHLRHKQIAEVHLDGRIFEIHVPLAGDFQISNALVAAGMAIATGTGA 321 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D A+ AL GR + G +D Y P +M+ +VL + P GR Sbjct: 322 DQAMAALEHLTGASGR-LELVGSTGDGAPAYVD--YAHKPEAME---NVLDAVRPFTTGR 375 Query: 371 RIAVLG 376 I V G Sbjct: 376 IIMVFG 381 >gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] Length = 503 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 51/409 (12%) Query: 20 GIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 GI P G + DSR I + FFA +G DG ++I A++ GA VV + Sbjct: 16 GICPNG---QLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESSDFEW 72 Query: 78 IGSLSIPVFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + GV + +A A + RS +IIA+TG+ GKT+T + + ALS + Sbjct: 73 NPDWKVDHLGVVGLKANAGPIADAFYGSPARS-MSIIAVTGTNGKTSTTQWIAQALSRLG 131 Query: 135 KTYACIGSY------NNHIGVP----------LTLARMPVDV---DFGIFELGMSHLGEI 175 + A IG+ N G + L R+ D+ + + S +G Sbjct: 132 RKTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGID 191 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + + + IA+ T HL + +AK +F G + +N DD+ L Sbjct: 192 QGRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLF-GWKGLKHAVVNLDDAMGIEL 250 Query: 236 KAKSHALGIKTIYSFGKSKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + T YS ++ AD +R E ++ ++ IG Sbjct: 251 ASELKSKMALTGYSINGAR-ADIPVLNAVDIRNRTHGDE---FRIESPYGDSKIRTQLIG 306 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L LG++ D D+A+++L+ GR + + + +ID + Sbjct: 307 RFNVSNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQ--QMGGKEAPLVVID--FAHT 362 Query: 350 PASMKAAISVLSQISPHGEGRRIAVL--------GDMCEMGELSQSFHI 390 P +++ +S L ++ G+ + G EMGE ++S + Sbjct: 363 PDALEKGLSTLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKAESADV 411 >gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans ATCC 17616] gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC 17616] gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC 17616] Length = 465 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY + G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G +A DAL R++ + ET+D L + DGDVV+ + Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens YS-314] gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] Length = 489 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 34/304 (11%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYAC 139 +IPV D+LG L L ++ I G+ GKT+T M +AL + + ++A Sbjct: 106 NIPVIRRSDLLGEL--------LEGHRQVL-IAGTHGKTSTTSMAVVALQAAGMDPSFA- 155 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 IG N G T A F + E S +R+ P IAV+T I P HL Sbjct: 156 IGGQLNKAG---TNAHQGTGEAF-VAEADESDASLLRYT-----PEIAVVTNIEPDHLDF 206 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-------- 251 F E + + L GT+ + DD L ++ A GI + +G Sbjct: 207 FKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAALGERAVARGINAV-GYGTVDAVAAH 265 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + + +E ++ + + G+ +E++ G HM N L +L AD+D Sbjct: 266 PTVPVKATILSSRVVAEGTYAVLDIDGREVEIILQIPGNHMVLNGAAALLSGYLLGADLD 325 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASMKAAI-SVLSQISPHGE 368 LS F R + Y + G F + + Y +P ++A + + ++ GE Sbjct: 326 KLAAGLSDFSGVRRRFE-YHGTVRGGQFDGASVYDDYAHHPTEVEAVLKAARERVDAAGE 384 Query: 369 GRRI 372 GR I Sbjct: 385 GRVI 388 >gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] Length = 492 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 156/379 (41%), Gaps = 47/379 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +++DSR + F A+ G G +FI +A++ GA V+ + A+ ++ V Sbjct: 19 ITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD----AAGARIAADVL 74 Query: 87 GVDD--VLGALNKLAVAARLRS------KATIIAITGSVGKTTT--------KEM----L 126 D V+ A + A+ S ++A+TG+ GKT+ +EM + Sbjct: 75 AASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCRQIWEEMGLAGV 134 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---SHLGEIRFLTHLV 182 + + ++ +A + P+TL R+ + GI + M SH + R L +V Sbjct: 135 NLGTTGVEGAWAY--PLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGLDQRRLDGVV 192 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241 A T HL E +AK +F L + G +N DD ++ A Sbjct: 193 LA-AAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGPVVAAICTQ 251 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNML 297 G + + G+S +A +L + + + QG+ HH IG A+N+L Sbjct: 252 RG-QEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRP----HHARLALIGGFQAENVL 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + G+V AD ALS GR + N G +D Y P +++ A+ Sbjct: 307 LAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRAN-GAAVFVD--YAHTPDAVETAL 363 Query: 358 SVLSQISPHGEGRRIAVLG 376 L PH GR +A++G Sbjct: 364 KAL---RPHVMGRIVAIIG 379 >gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341] gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341] Length = 440 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 61/360 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWM---EVQLQGKSM 281 + HA ++ + +FG A F Q R++ +++ M E+ L Sbjct: 218 T----QTFPDHAAHLQVV-TFGVEHAAQFSVAQHQGREYLFARDEAVMACAELSL----- 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGF 338 +G H N+L L ++ + A+ AL K G +RC A N G Sbjct: 268 ------VGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVADNHG- 315 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +++S N AS AA+S L EG+ ++G + + + + LA VL+ Sbjct: 316 IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVLAT 365 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + L F V K +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 366 LPVQ---LCCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL--SPACASF 419 >gi|229076197|ref|ZP_04209165.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18] gi|229099168|ref|ZP_04230102.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29] gi|228684396|gb|EEL38340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29] gi|228707060|gb|EEL59265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18] Length = 436 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSY--NPDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFADINDVFGAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|163942418|ref|YP_001647302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|229013893|ref|ZP_04171021.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048] gi|229062372|ref|ZP_04199689.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603] gi|229135527|ref|ZP_04264312.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196] gi|229169419|ref|ZP_04297128.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621] gi|229486469|sp|A9VKJ7|MURC_BACWK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|163864615|gb|ABY45674.1| UDP-N-acetylmuramate--alanine ligase [Bacillus weihenstephanensis KBAB4] gi|228614059|gb|EEK71175.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621] gi|228647948|gb|EEL03998.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196] gi|228716941|gb|EEL68627.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603] gi|228747562|gb|EEL97437.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048] Length = 436 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ I ++ +A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFADINDVFNAFQEM--ALQVKKGIIACGDDEELQKVQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 519 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 88/387 (22%), Positives = 148/387 (38%), Gaps = 63/387 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P + F A G DG + A+ +GA +V + V + FG + Sbjct: 35 LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVEREGVEAF------RFGAE 88 Query: 90 DVLGALNKLAVAARL---------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT---- 136 V AL L A L + ++A+TG+ GKT+T L AL+ + + Sbjct: 89 GV-AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWLADALNQLAGSGLAA 147 Query: 137 ---YACIGSYNNHIGVPLTLARM------PVDVD----------FGIFELGMSHLGEIRF 177 IG+ +GVP L PV + G + S +G Sbjct: 148 HGGCGLIGTLG--VGVPPELECTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEH 205 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELL 235 +R +AV T HL +G+ AK+ +F+ GL+ +N DD L Sbjct: 206 RLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQAA---VVNIDDPRGGEL 262 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH------HGIG 289 + L + I + S +L Q + +W E L+ E V IG Sbjct: 263 ---ADTLAQRPIDLWTTSITGPARL----QARDITWGEGGLRFTVAEGVQAHVLQTRVIG 315 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 ++ N+L + + L ++ A+ A + P GR + +++ L+ Y Sbjct: 316 HYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRME----LIHEPDQPLVAVDYAHT 371 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ A+ L ++ GR V G Sbjct: 372 PDALEQALQALRPVAEQRGGRLWCVFG 398 >gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] Length = 483 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 143/372 (38%), Gaps = 36/372 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + F A+ G DG F A+Q GA V+ + D+ L +P Sbjct: 18 ITGVTADSRKVRAGTLFAALPGTKVDGASFAAAAIQAGAAAVIADRDL-----GLPVPTI 72 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D A A R +A+TG+ GKT+ + +T A +G+ Sbjct: 73 VAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSASMGTLGVT 132 Query: 147 IGVP------LTLARM--PVDVDFG-----IFELGMSHLG--------EIRFLTHLVRPH 185 + P LT + P D I +G+SH + R L V+ Sbjct: 133 VSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRLDG-VKLT 191 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A + HL +E +AK +FE L + GT LN DS A + + Sbjct: 192 AAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNA-DSDAFPAFAAAAVIAG 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + G++ A +L K + E W+ + +G+S +V G A N L+ G+ Sbjct: 251 QWVMPVGET-GATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVAAGLCW 309 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ L GR +R +G +D Y P ++ +VL + Sbjct: 310 AAGLTLEEVFAGLEALEGAPGRLQRVGQG-ARGGEAYVD--YAHTPDGLE---TVLKALR 363 Query: 365 PHGEGRRIAVLG 376 PH GR I V G Sbjct: 364 PHVRGRLIVVFG 375 >gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens] Length = 539 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 37/373 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI DSR + P + F +KG DG++F A++KGA +V +++++ + G L V Sbjct: 32 ITGIQHDSRLVIPGDLFVCVKGLKSDGYEFAHQAIEKGAVAIVSSSEVLPAEG-LEASVV 90 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D L+ LA A ++ ITG+ GK TT ++ ++ +G+ N Sbjct: 91 -VEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGTIN 149 Query: 145 NHIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFL-------THLVRPH-----IAVI 189 +I L P V M H G + HL R +AV Sbjct: 150 YYINGKKKLEATHTTPDAVHLQKHMASMVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVF 209 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + +E A ++F + EK I +N DD + + + Sbjct: 210 TNLTHDPEDFHKSEDEYKEASGKLFAKMVNPEKHRKI-VNIDDPQSDYFVTQGNQDVPVV 268 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y+ G +KNAD + + +S + V+ ++E+ +G H N+L + + + Sbjct: 269 TYAMG-NKNADVYPLEVQLSLFESELLVRTPRGNLEISSGLLGRHNVYNILAAVAVGIAV 327 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKAAISVLSQI 363 A ++ ++ + G RC L Q F ++D + P + + + + Sbjct: 328 DAPLEDIVRGIEEVDAVPG-----RCELIDEEQAFAVIVDHA--NTPDGLSRLLDTVREC 380 Query: 364 SPHGEGRRIAVLG 376 P R I VLG Sbjct: 381 GPR---RIITVLG 390 >gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 552 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 22/211 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGS 80 V+ ++ DSR F A+ G DGHD+I AV +G L++ V+ +A + Sbjct: 27 VSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGLAG 86 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++ D AL L A + + +I ITG+ GKTT +L ++S Sbjct: 87 EAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITGTNGKTTCAYLLEALIASGGGQPG 146 Query: 139 CIGSYN-NHIGVPLTLARM---PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRP 184 IG+ N + G + A P + + + E+ G++H+ ++ V Sbjct: 147 VIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRRVAGVEF 206 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 +A+ T ++ HL +E +AK +FE Sbjct: 207 DVALFTNLSREHLDYHGDMESYFAAKKRLFE 237 >gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] Length = 509 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 158/384 (41%), Gaps = 47/384 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++ DSR + P F AI+G H DGH FI A+ +GA VVV+ V Sbjct: 26 VQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVAVPVVV 85 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D + AL LA A + T I ITG+ GK+TT ++ L++ + I + + Sbjct: 86 VADSRV-ALAPLAAAFYDYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGMISTVD 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELG--MSHLGE----------IRFLTHLVRPH------- 185 IG R P D E + L E I +H + P Sbjct: 145 FQIGN----RRWPNDTRQSTPEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVGC 200 Query: 186 ---IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIF--LNYDD---SFFELLK 236 +AV+ I HL E+ + KA++F L E++G+ + +N DD ++F L Sbjct: 201 AFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGSRWAIVNADDPNHAYF-LDA 259 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + A+ ++ +G + AD Q + S + V + ++ G A N Sbjct: 260 APADAVRLR----YGLHEPADVQGQILHSGPMSSVVRVTSPWGTTDLTVPLPGRFNASNA 315 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L + L+ V A ++ + RG+ Q F ++D Y NP S + Sbjct: 316 LAALTVA--LSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVD--YAHNPDSFE-- 369 Query: 357 ISVLSQISPHGEGRRIAVLGDMCE 380 + + + P +GR IAV G E Sbjct: 370 -QIFAMLRPQVQGRMIAVFGSAGE 392 >gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis ST3] gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis ST3] Length = 449 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 27/224 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160 A L S A I+ ITGS GKTTT M+ L++ K G +IG P ++A+ Sbjct: 106 AYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCG----NIGYPASSVAQTATAE 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T RPHIAV+T + +H+ E+ +AK I + Sbjct: 162 DTLVMELSSFQL----MGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAE 217 Query: 221 GTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + LN++ + L + K+ + + T+ + AD +L +G Sbjct: 218 DFVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLY--------------FKG 263 Query: 279 KS-MEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + M+ G+ G H +N L T+ + +L D ++LS F Sbjct: 264 EYIMDADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLSAF 307 >gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17] gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17] Length = 471 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 46/350 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158 +R K+T+ A+ G+ GKTTT M+ L + + T I SY ++ AR+ Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLGA 156 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D+ + E S +R IAV+T I P HL ++ + + A E E + Sbjct: 157 S-DWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFVENVP 210 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277 G L D + + + + + ++G S AD + + E ++ Sbjct: 211 FYGAALLCLDHPEVQNILPRVRD---RRVVTYGFSAQADVRGVNVTPIPGGNRFEAIIRH 267 Query: 278 ----GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331 +S+E + + G H QN L +G+ L D T + F + R K Sbjct: 268 RDGSSRSIEGIELPMPGRHNVQNALAAIGVALELGIDDATIQQGFGQFGGVKRRFTKVGE 327 Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382 A++ G T+ID+ Y +P ++A ++ V++ + PH R LG++ E Sbjct: 328 IAVDGGVATVIDD-YGHHPVEIRAVLAAAREGARGRVIAVVQPH----RFTRLGNLME-- 380 Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 E +F+ D V +Y + G AL + L R H + D Sbjct: 381 EFQTAFNDADRVLVTPVYAAGEQPIEGVDASALVEGLKRRGHRSTATVAD 430 >gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 462 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 37/335 (11%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 + + H +G D ++++ L N ++VA+ + +IP+ L++ + A Sbjct: 54 YLGHEASHVEGADLVVYST----ALPKDNVEIVAA-EARNIPI---------LHRSQMLA 99 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 RL ++ IA+ G+ GKTTT M+ + + C IG + Sbjct: 100 RLMNERKGIAVAGAHGKTTTSSMIALVMEK------CGADPTYIIGGEIMNIGSNAKAGT 153 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221 G + + + + FL + P +A++ I HL N+ G E + A A+ ++ G Sbjct: 154 GEYVVAEADESDGTFLQYY--PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGG 211 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + DD++ + + + ++G +AD+Q + V +G+++ Sbjct: 212 KAIVCKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENL 267 Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + G H N L TL I D A+ FH G +R++ Sbjct: 268 GKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDIL 324 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +ID+ Y +P + A IS + G+RI V+ Sbjct: 325 IIDD-YAHHPTEISATIS-----AAKATGKRIIVV 353 >gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] Length = 490 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 40/369 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 + G+S S + + F +G +D H+ I ++KGA VVV ++ + + Sbjct: 25 ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDLDFPHIQVFDS 84 Query: 84 --------PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 +F D DVL + + I + S+G+ + +LT A+ Sbjct: 85 RYFEAKVASLFFEDPWKDVL-TFGVTGTNGKTTTTMMIYHMLTSLGERGS--VLTTAVKR 141 Query: 133 IKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIA 187 I SY + I P L+ M + + G F L +S ++ VR + Sbjct: 142 I-----LGSSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFDVG 196 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T I+ HL E AK +F+ L+ G LN +S + KS + Sbjct: 197 IFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--ESLADAFNRKSRKI----- 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG SKNAD++L + E + ++ ++V IG A N + + L Sbjct: 250 -TFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIGDFNAYNAAAAIAALHQLG 308 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D +L F EGR + R A G ++D + +P +++ + + +IS Sbjct: 309 YDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS--- 363 Query: 368 EGRRIAVLG 376 +GR I V G Sbjct: 364 QGRVIVVFG 372 >gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella halifaxensis HAW-EB4] gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis HAW-EB4] Length = 488 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 21/206 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +++DSR++ F AI G DG FI A ++GA V+V+TD G L + G+ Sbjct: 22 LTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVLVHTDSPEEHGKL-VHEAGLQ 80 Query: 90 DVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + LN+ A+AA+ + + II +TG+ GKT+ +++ K A +G+ Sbjct: 81 ILFFQLNRQISALAAQAYPLSQVRPQIIGVTGTNGKTSVTQLIAQLQLLQGKQTAVMGTL 140 Query: 144 NNHI-----------GVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAVI 189 N + P+TL + + + + +S G ++ V +AV Sbjct: 141 GNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE 215 T ++ HL ++ +AK +F+ Sbjct: 201 TNLSRDHLDYHHTMDAYGAAKKRLFQ 226 >gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 486 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 79/357 (22%), Positives = 138/357 (38%), Gaps = 43/357 (12%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACI 140 IPV D+LG L +T + I G+ GKT+T M +A+ + + ++A Sbjct: 103 IPVIRRSDLLG---------ELLEGSTQVLIAGTHGKTSTTSMSVVAMQAAGMDPSFAIG 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G N + + G E+ ++ E +P++AV+T + P HL F Sbjct: 154 GQLN----------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVTNVEPDHLDFF 203 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQ 259 E + + G + + +D L +S GIKT+ Y + A + Sbjct: 204 KTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPE 263 Query: 260 LRKW------KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + +E + + + G+ + V+ G HM N L ++ DVD Sbjct: 264 VPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKL 323 Query: 314 IKALSVFHPKEGRGKRYR--CALNQGFFT--LIDESYNANPASMKAAISVL-SQISPHGE 368 ++ LS F G +R+ A+ G F I + Y +P + A +S +++ G+ Sbjct: 324 VEGLSDF---SGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAARTRVKAAGK 380 Query: 369 GRRIAVLGD--MCEMGELSQSFH-----IDLAEVLSLYNISHVWLSGFHVLALKDAL 418 GR I E + F D A VL +Y + G + DA+ Sbjct: 381 GRVIVAFQPHLYSRTIEFQKEFAGALSLADAAVVLEIYGAREQPVDGVSSEIITDAM 437 >gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia akari str. Hartford] gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia akari str. Hartford] Length = 492 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 55/296 (18%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAITG+ GK+TT +++ L+S Y G +IGVP A+ D + EL Sbjct: 105 NFIAITGTNGKSTTTALISHILNSSGLDYQVAG----NIGVPALQAK--ASKDGYVLELS 158 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 L ++ T IAV+ I P HL + +AK++IF+ ++K +N D Sbjct: 159 SFQLDLVKIFT----AKIAVLLNITPDHLDRHQHMNGYIAAKSKIFDRMDKDSYAVINID 214 Query: 229 DSFF-ELLKAKSHALGIKTIYSFGKSK-------------NADF--QLRKWKQCSEQSWM 272 + + E+ IK + F +K N +F +R Q + +S+ Sbjct: 215 NDYCREIFITLQQEQRIKLV-PFSVTKILENCISVVDNKINDNFFDDIRFECQYNSESFR 273 Query: 273 EVQLQGKSME---VVHHGI----------------------GYHMAQNMLMTLGIVSILT 307 + + QG+ E V H + G H +N+ + + I+ Sbjct: 274 QNEFQGEPAERIKVCEHRLDLQNSLVSNFLNDAVPFNNNLQGTHNDENIAASYAVAKIIG 333 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + ++++S F R +Y C++N ++S N S +I L I Sbjct: 334 VEPKKILESISGFQSLPHR-MQYICSINN--INFYNDSKATNAISAVQSIKALDNI 386 >gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia K279a] gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Stenotrophomonas maltophilia K279a] Length = 502 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 154/386 (39%), Gaps = 45/386 (11%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+P LL A+ GH + G+ +DSR++ P AF AI G G F+ Sbjct: 1 MSPSMLLSQLLPDVALAGHDP------VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54 Query: 59 HAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 A GA +++ A + + + I V G+ +GA+ A RS A ++ +TG+ Sbjct: 55 QARAAGASVILFEPPAPAELPAPADAIAVPGLRARMGAMADQFHGAPSRSMA-MVGVTGT 113 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVPLTL---ARMPVDVDFGI 164 GKT+T ++L A + IG+ + PL L A + D G Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173 Query: 165 FELGM---SH-LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLE 218 + M SH L + R V +AV T + HL + +AKA +F GL+ Sbjct: 174 RAVAMEVSSHALDQGR--VDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPGLK 231 Query: 219 KTGTIFLNYDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 +N DD+F F L A +G+ + + +A + + E+ Sbjct: 232 AA---VINLDDAFGGQLFAGLPAGVQPIGLSSR----GATDASVRAEALQLDGRGIAFEL 284 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + G+ V +G N+L G + + + LS P RG+ R Sbjct: 285 VIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPI--RGRMNRLGG 342 Query: 335 NQGFFTLIDESYNANPASMKAAISVL 360 G T++ + Y P +++ A+ L Sbjct: 343 EDGLPTVVVD-YAHTPDALEQALDSL 367 >gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50] gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50] Length = 460 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 42/305 (13%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A++G+ GKTTT ML+ I L + +G + IG ++ G + + Sbjct: 114 VAVSGTHGKTTTTAMLSYIMLEADVDPTISVGGIIDDIGG---------NIRVGSSDYFV 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + E H P+I++I + HL FSGIEEIA + + G + +N D Sbjct: 165 TEACEYTNSFHAFSPYISIILNVDADHLDFFSGIEEIAESFHTFATKTPENGKVIVNGDM 224 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSM-EVVHH 286 +F+ + + L + I +FG+ + ++ + ++ V + G+++ ++ H Sbjct: 225 KYFDTV---TRDLKCQVI-TFGEDPKNHYSAANIRFDEFGRPTYTLV-IDGENITDITLH 279 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--- 343 G H N L + + L D+D AIKA + H K G +R+ +G T++D Sbjct: 280 VFGKHNVYNSLSAIAAATELGIDID-AIKA-GLLHCK-GAERRFEY---KG--TILDNVK 331 Query: 344 --ESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + Y +P + A ++ PH R A+ D ++ LS H+ + Sbjct: 332 VMDDYAHHPTEIAATLAAAKNTDYHELWCVFQPHTYSRTYALFDDFAKV--LSVCDHVIV 389 Query: 393 AEVLS 397 A++ + Sbjct: 390 ADIYA 394 >gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240355] Length = 445 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD+F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDTFCCAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4] gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4] Length = 476 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 40/279 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ + T+ IG N IG L G + + Sbjct: 119 IAVAGTHGKTTTTSLIAGILGEGGFDPTF-VIGGRVNSIGANGRLGS-------GEYLVA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-----TGTI 223 + + FL HL +P +AV+T + H+ + G + + KA E L + Sbjct: 171 EADESDASFL-HL-QPLLAVVTNVDADHMGTYGG--DFTALKAAFLEFLHHLPFYGLAVV 226 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--M 281 LN D ELL + + ++G ++AD++LR+ K ++ V G + Sbjct: 227 CLN-DPVLRELLPDIG-----RPVLTYGTCEDADYRLRELKHVQGRTQFRVARPGNDNWL 280 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQ 336 VV + G H A N L + + L A+ D AI +AL F G G+R++C A + Sbjct: 281 TVVLNLPGAHNALNALAAMVVAHELGAE-DAAIQRALEGF---SGIGRRFQCYGEIATPR 336 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 G L+D+ Y +P + A + L P GRR+ V+ Sbjct: 337 GRVLLVDD-YGHHPRELTATLEALHAGWP---GRRVVVV 371 >gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] Length = 506 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 31/204 (15%) Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV T + HL +++ SAKA++F G +N DDS+ E L + L Sbjct: 208 EVAVFTNLTQDHLDYHQNMDDYFSAKAKLFSSDYLKGRAIINADDSYGERLIQQ---LPT 264 Query: 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----------YHM 292 + ++S+ ++ +ADF W + + S+ ++G ++H +G Y++ Sbjct: 265 EQVWSYSIQNPSADF----WTK--DLSYEPTGVRG----IMHTPVGEVSFNSPLVGQYNL 314 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + N+L +G V L D++ AL+ F GR +R + Q ++D Y P S Sbjct: 315 S-NLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQPEQDISVIVD--YAHTPDS 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ ++L P EG+ I V G Sbjct: 372 LE---NLLRASRPFIEGKMICVFG 392 >gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8] gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8] Length = 479 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 102/387 (26%), Positives = 159/387 (41%), Gaps = 45/387 (11%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ L + + T+ IG L A + G + + Sbjct: 108 IAVAGTHGKTTTTSLIASILGEAGMDPTFV--------IGGKLEAANANAKLGTGDYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P +AV+T I H+ + E++ SA E + L G + Sbjct: 160 EADESDASFL-HLT-PVMAVVTNIDQDHMDTYEHSFEKLKSAFVEFLQQLPFWGMAVVCV 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSME--V 283 DD+ E+L + K + ++G S++A + + + + VQ + G + E V Sbjct: 218 DDANIREILPRVT-----KPVMTYGLSEDARIRAKNVRADDGKMHFTVQRINGVTTEFDV 272 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQ 336 + G H N L + I S L IKAL F R +RY R A + Sbjct: 273 TLNLPGNHYVLNALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEVPAMPRNAASA 332 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTLID+ Y +P M+A I+ P+ RR+ + F D VL Sbjct: 333 GTFTLIDD-YGHHPVEMQAVIAAARGAFPN---RRLVMAFQPHRYTRTRDCFE-DFVRVL 387 Query: 397 SLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 S ++ + V+ +G + D +L R+I V + ET D L I D Sbjct: 388 SSADVVLLTEVYSAGEASIVAADTRSLIRAIRVAGKVEPLFVETTDELPQAILDIAHADD 447 Query: 446 VVVVKSSNSCGFYRLINLLLEEFPAIQ 472 VV+V + S G L L+ A Q Sbjct: 448 VVIVMGAGSIGQVALKTKELQAAKASQ 474 >gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 780 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 54/383 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 + GI DSR + + F G DGH ++ A ++GA VV + D+ ++G ++ Sbjct: 267 ITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 326 Query: 85 VFGVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLT---IALSSIKKTYAC 139 + V+D L L+ A + SK +I I+G+ GKTTT ++ A+ ++ Sbjct: 327 I--VEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKTTTAYLIKGMYEAMGLRTGMFST 384 Query: 140 IGSY---NNHIGVPLT----------LARM------PVDVDFGIFELGMSHLGEIRFLTH 180 + Y +N + P T +A+M V ++ L E+ F Sbjct: 385 VAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAVVMEASSHGLASGRCDEVDF--- 441 Query: 181 LVRPHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLK 236 IAV T + HL +F G EE AKA++F + E+ I +N DDS Sbjct: 442 ----DIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDPERHRKI-VNIDDSNASFFI 496 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ + + + ++K+AD K++ ++ + V +E+ +G H N+ Sbjct: 497 AQGNP-DVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 555 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASM 353 L + + + A ++ ++ + G RC L Q F ++D Y P + Sbjct: 556 LAAVAVGIAVGAPLEDIVRGIEEVDAVPG-----RCELIDEEQAFGVIVD--YAHTPDGL 608 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 + + ++ P R I V+G Sbjct: 609 SILLDSVRELKPK---RIITVIG 628 >gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] Length = 503 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 104/280 (37%), Gaps = 26/280 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL AI+ + V ++ DSR + FFA+ G H DGH F+ A+ +GA VV Sbjct: 8 LLDAIKPEEVRGGGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAVAVV 67 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 ++ + + + + +TG+ GK++T + Sbjct: 68 HERELPSYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGVTGTDGKSSTTYFIYQL 127 Query: 130 LSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDF------GIFELGMSHLGEIRFLTH 180 L + CI + G P L + + F + E G +H + +H Sbjct: 128 LRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTH-AVVEATSH 186 Query: 181 LVRPHIA----------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + P A V+T I H+ E+ K +F GL + G LN DD Sbjct: 187 GLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEGGKAVLNLDDP 246 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 L ++ A G+ Y G + A R W + E+S Sbjct: 247 SSGFLAERTRA-GVWG-YGLGTREGA----RLWAEVREES 280 >gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina MBIC11017] gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina MBIC11017] Length = 487 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 97/413 (23%), Positives = 161/413 (38%), Gaps = 67/413 (16%) Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG 141 P+F DVL AL ++ IAI G+ GKTTT ++ L +S+ T G Sbjct: 101 PIFHRSDVLAAL--------MQEFPQSIAIAGTHGKTTTSSLVGYLLLQASLDPTIIVGG 152 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 G T P + + E S ++F PHI VIT I H +++ Sbjct: 153 EVAAWGGNART-GESP----YLVAEADESDGSLVKFF-----PHIGVITNIELDHPDHYT 202 Query: 202 GIEEIASAKAEIF-EGLEKTGTIFLNYD-----DSFFELLKAKSHALGIKTIYSFGKSKN 255 ++++ S IF E ++ T+ ++ D D F L +S YS + Sbjct: 203 SLDQVVS----IFQEFVDHCHTLIVSVDCPTIADRFLALATDQS-----MITYSLSSKVS 253 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAI 314 AD+ ++ + + +EV +G+S+ + +G H N L + + + + Sbjct: 254 ADYTVQNIDYSGQGTIVEVLERGESLGQLELPLLGEHNLSNALAAVAVGRYVGLEFPAIA 313 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------------- 358 KAL F G +R+ LID+ Y +P+ ++ ++ Sbjct: 314 KALRTF---SGAKRRFEIYGEAQGICLIDD-YAHHPSEIQVTLASAKLQAQAAAATYSQS 369 Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD 416 V++ PH R E SQSF DL V +Y+ + L D Sbjct: 370 RVVAVFQPHRYSRAATFF------QEFSQSFQDADLVVVTDIYSAGEANPGTINGKKLAD 423 Query: 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 A+ + V + T+ + F+Q L GDVV+ + R+I LL F Sbjct: 424 AIAANHSVVTFQPTLTNVIDFLQGHLQSGDVVLFLGAGD--LNRIIPDLLTHF 474 >gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus] Length = 450 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. m3-13] Length = 418 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 78/384 (20%), Positives = 146/384 (38%), Gaps = 43/384 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L+Q + + + ++ I +DSR + FF IKG DGH F AV KGA Sbjct: 3 LQQLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----------------VAARLRSKAT 109 ++ + +++PV V D + A+ LA + Sbjct: 63 AIISEKPL-----DVAVPVIVVPDTMRAMAILADVFFQQPTHKLHLIGVTGTNGKTTTTH 117 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELG 168 II + T + TI + KTY + + + + + +M + VD + E+ Sbjct: 118 IIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQMVENKVDTVVMEVS 177 Query: 169 MS--HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220 H+G + +AV T + HL +EE AK+ +F L K Sbjct: 178 SHALHMGRVYGCDF----DVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSLGNSYNLAKP 233 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 LN DD ++ K + A + ++G ++ +D + + K ++ + ++ K Sbjct: 234 KYAVLNADDPASDIYKRATAA----QVITYGINETSDIRAKNVKTSAKGTTFDLVYDNKV 289 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + +G N+L + + ++T I + GR + Q F Sbjct: 290 VPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFEAIEAG--QDFTV 347 Query: 341 LIDESYNANPASMKAAISVLSQIS 364 ++D Y P S++ + Q+S Sbjct: 348 IVD--YAHTPDSLENVLKTTKQLS 369 >gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp. JDR-2] gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp. JDR-2] Length = 473 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 9/126 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S A II ITGS GKTTT + L G +IG+PL A D I Sbjct: 110 SAAPIIGITGSNGKTTTTTWIGKLLGEAGLNPIVAG----NIGIPLCEAAAEATKDNWI- 164 Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 ++ L + T RP IA++ IA HL G+E+ ++KA++F Sbjct: 165 ---VAELSSFQLKGTSSFRPRIALLLNIAETHLDYHGGMEDYVASKAKLFANQTADDVAV 221 Query: 225 LNYDDS 230 LN+DD+ Sbjct: 222 LNWDDA 227 >gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] Length = 480 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + P AF AI G DGH+FI A+ KGA ++ ++ + G IP+ V Sbjct: 15 ITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKSRSG---IPIVRVK 71 Query: 90 DVLGALNKLA 99 D L KLA Sbjct: 72 DSRSILGKLA 81 >gi|229019918|ref|ZP_04176714.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273] gi|229026149|ref|ZP_04182520.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272] gi|228735158|gb|EEL85782.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272] gi|228741383|gb|EEL91587.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273] Length = 436 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + L+IPV LG L ++ T +A+TG+ GKT+T +L + Sbjct: 77 IVAAKELNIPVHRYHHFLG---------DLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAH 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTI 192 T IG H GV + + +FE E R FL++ P A++T I Sbjct: 128 PTSYLIGDGTGH-GVE--------NSKYFVFE-----ACEYRRHFLSYY--PDYAIMTNI 171 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H F+ + ++ +A E+ L+ I DD + ++AK + Y FG Sbjct: 172 DFDHPDYFTDVNDVFNAFQEM--ALQVKKGIIACGDDEELQKIQAKVPVI----FYGFG- 224 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVD 311 ++ DFQ R ++ ++ + +V ++ + G G H N L + + DV+ Sbjct: 225 -EDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDHSVLNALAVIALCHYENVDVE 283 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 L+ F EG +R+ G +ID+ Y +P + A I Q P E Sbjct: 284 AVKHQLTTF---EGVKRRFN-EKPMGEQVIIDD-YAHHPTEINATIEAARQKHPERE 335 >gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis M23864:W1] gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis M23864:W1] Length = 449 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ ++ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEARPDEY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L I +PHIA+IT I AHL +E +AK +I++ K Sbjct: 163 LITELSSFQLLGIE----KYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRHLIESENLKAKT 238 >gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149] gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149] Length = 488 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP++++IT I HL+ + + + +A AE ++ G I DD L A Sbjct: 187 RPYLSLITNIEADHLNTYGDLATLEAAFAEFARLTDRRGFIVTCADDPGGRRLAQTLRAE 246 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301 G + ++++G++ +AD +L + ++ ++ G+S+ + G HM N + Sbjct: 247 G-RRVHTYGEAADADLRLSEIVSSAQGVRYLAEIDGRSLGEFRLPVPGRHMGLNSASAVL 305 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360 +L V+ A AL+ F G +R+ R + G L+ + Y +P SM A+ L Sbjct: 306 TAYLLGLPVEAAEAALAAF---PGVRRRFERKGVADG--VLVYDEYAYHPTSMTLALQTL 360 Query: 361 SQISPHGEGRRIAVL 375 +++ G+GR I V Sbjct: 361 REVA--GDGRLIVVF 373 >gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxidans DMS010] gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxydans DMS010] Length = 513 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 77/362 (21%), Positives = 148/362 (40%), Gaps = 39/362 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIG 79 + IS+DSR + F A+ + + A+ KGA V+++ D A + Sbjct: 29 MLTDISMDSRRVTAGGLFLALAKDEAERQKHLHQALDKGAFAVLIDADKPLTQTETAMLN 88 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135 + + V ++ + ++AAR + T+IA+TG+ GKT+ + + L + K Sbjct: 89 EAVVSAYPVKNL--SQQAGSIAARFYQQPSQHMTVIAVTGTNGKTSVSQFIAQVLEADGK 146 Query: 136 TYACIGSYN-------NHIGV----PLTLARMPV-----DVDFGIFELGMSHLGEIRFLT 179 IG+ G+ P+++ R+ ++ + E L + R Sbjct: 147 PCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYVVLEASSHALEQGRL-- 204 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAK 238 + V ++AV+T ++ HL + + A AK +FE + +N DSF L+ A Sbjct: 205 NSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE-MGSVSRAVINACDSFGRTLMNAL 263 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + T + S AD + + ++ + G+ + +G N L Sbjct: 264 RSDIQLLT---YSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLPVLGRFNVDNALA 320 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 TLG++ + A +ALS GR + Y ++ +ID Y P +++ A+ Sbjct: 321 TLGVLLSIGYQPSQARQALSQCRAVAGRMEAY--GVDGQPMLVID--YAHTPDALEQALR 376 Query: 359 VL 360 L Sbjct: 377 TL 378 >gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] Length = 563 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 29/160 (18%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + G VP V G S+DSR++ P + + A+ G + G F AV+ GA V+ + A Sbjct: 24 AAGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTDAAGAAV 83 Query: 78 I----GS-----------------------LSIPVFGVDDVLGALNKLAVAARLRSKA-- 108 I GS +P+ VDD L +LA A A Sbjct: 84 IRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYGDPGADL 143 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 T++ ITG+ GKTTT +L AL ++ + IG+ +G Sbjct: 144 TMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVG 183 >gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] Length = 493 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 22/213 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 Q F++ +++DSR+I + F A+ G DG FI A+ +G V+V+TD + G + Sbjct: 18 QTFLD-LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGVTAVLVHTDSIEEQGKVIT 76 Query: 84 PVFGVDDVLGALNK-LAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 GV L K ++ A +R I+ ITG+ GKT+T ++ ++ ++ Sbjct: 77 TEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGK 136 Query: 137 YACIGSYNNHIGVPL-----------TLARMPVD-VDFGIFELGM--SHLGEIRFLTHLV 182 A +G+ N + L TL R + G+ M S G ++ V Sbjct: 137 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAGKGVNTCAMEVSSHGLVQGRVDAV 196 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 +AV T + HL +E A+AK +F Sbjct: 197 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR 229 >gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 493 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + D+ I P +AF A KG + G +I A++KGA +VV+ + + L +P+ Sbjct: 22 IKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAIVVDDENYFNEADLPVPII 81 Query: 87 GVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V + L A + T+IA+TG+ GKTT + L+ + K IG+ Sbjct: 82 WVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFIGQILNQLDKRAMVIGT 139 >gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 43063] Length = 499 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 28/274 (10%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+ G+ GKT+T M+ AL I + IG +G T AR+ F + E Sbjct: 125 LVAVAGAHGKTSTSSMMAHALLDIGADPSFAIGGIIADLG---TGARLGSGSAF-VIEAD 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P + VIT I P HL ++ A + L K G + L D Sbjct: 181 ES---DGSFLNY--SPAVEVITNIEPDHLDHWGSSAAFEQAFVDFTGRLRKGGALVLCAD 235 Query: 229 DS----FFELLKAKSHALGIKTI-YSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSM 281 D+ E + + A G + I Y FG D QL + + + +V + Sbjct: 236 DAGVKRLAEQVSERGGADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQ 295 Query: 282 EVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 +V H + G HM N LG +L D+ I AL F G +R + + Sbjct: 296 QVFHGQLNLRIGGQHMLLNAGGALGAAYVLGVDLPQFIAALRTF---SGADRRMQPVGER 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + D+ Y +P + A + ++ G+GR Sbjct: 353 DGVRIYDD-YGHHPTEIAATLQAARDLA--GKGR 383 >gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1] gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseiflexus sp. RS-1] Length = 509 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 94/423 (22%), Positives = 160/423 (37%), Gaps = 53/423 (12%) Query: 7 FHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H++L+ + H + P+ + G+ DSR++ P F A +G H DGH +I A+++G Sbjct: 3 LHEILKHLCEPAHMPPVNPE--IAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA------ARLRSKATIIAITGSVG 118 A VV A G + +P V + AL LA A R+R I+ +TG+ G Sbjct: 61 AAAVVYEDP--AWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMR----IVGVTGTDG 114 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL----TLARMPVDVDFGIFELGMSHLG- 173 KTTT + ++AL + +G+ + IG + + P + M+ G Sbjct: 115 KTTTTFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLRDMAEAGC 174 Query: 174 ---EIRFLTHLVRPH----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--- 217 I +H + IAV T + HL +E+ KA +FE L Sbjct: 175 SYAVIEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEF 234 Query: 218 -------EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 ++ +N DD + + + Y+ +AD + + + Sbjct: 235 NDAAAPFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAV--HAHADVRAEDVRSTRDGL 292 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 V + + G N L L + ++ + AL RG+ Sbjct: 293 RFRVTTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERV--PGVRGRME 350 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R Q F L+D Y P + + + + P EG+ IAV G E + Sbjct: 351 RIEAGQPFTVLVD--YAHTPGAFEKLFRI---VRPLTEGQVIAVFGSAGERDRAKRPLQG 405 Query: 391 DLA 393 ++A Sbjct: 406 EIA 408 >gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] Length = 552 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 147/382 (38%), Gaps = 46/382 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GI+ DSR++ P + + A+ G G DF A GA ++ + + +PV Sbjct: 39 LSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASLGAAAILTDPAGAGPALATGLPVL 98 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYA------ 138 V D G + ++A + I ITG+ GKTTT ++ L + ++ A Sbjct: 99 VVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRAAQEARAKETGEE 158 Query: 139 -----CIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------ 185 IG+ IG + P D M G +R L V H Sbjct: 159 IPPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERG-VRALAMEVSSHALVLGR 217 Query: 186 -------IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKA 237 +AV ++P H+ S +E+ AKA++F + K G + N+DD + L Sbjct: 218 VDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQLFTKARSKLGVV--NHDDEYGRRLLT 275 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 +S + SF + D R + ++ V +G+ + G Sbjct: 276 ESEV----PVISFSAEGHPDADWRAEDVIVGSLDSTFTAVGPEGQRISARSPLAGPFNVA 331 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + ++ D TA ++ GR +R Q + ++D ++ + Sbjct: 332 NTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA--GQPYLAVVDYAHKTD----- 384 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 A SVL + EGR VLG Sbjct: 385 AVESVLRALRKVTEGRLYIVLG 406 >gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82] gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82] gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis XB6B4] Length = 459 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 43/387 (11%) Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 A+ SIP+ ++LG + + + IA+ G+ GKTTT M++ L + K Sbjct: 87 AAAKERSIPMLSRAELLGQI--------MDNYNNSIAVAGTHGKTTTTSMISQILLAAKA 138 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + I V L + ++ G ++ +S E P +VI + Sbjct: 139 --------DPTISVGGILKAIEGNIKVGKSDIFVSEACEYTNSFLHFYPRYSVILNVEAE 190 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSK 254 HL F I++I ++ + +K G I +N + +++ EL + +FG + Sbjct: 191 HLDFFKDIQDIRNSFRKFAGNTKKDGAIIINGEIENYTELTSGLD-----PQVITFGLND 245 Query: 255 NADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + D+ + + + S+ + M+V H G H N L + + L D Sbjct: 246 SCDYYPSDITFDETACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDA 305 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------I 363 + LS F + R + C T+ID+ Y +P ++A ++ Sbjct: 306 ILAGLSAFGGADRRFQYKGCVDG---VTIIDD-YAHHPTEIRATLTAAKNYPHKRLVLAF 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSI 422 PH R A L D ++ LS + + LA++ + + +S +LA LK+ + Sbjct: 362 QPHTYSRTKAFLDDFADV--LSMADVVVLADIYAAREKNTYDISSRDILAKLKE---KGT 416 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449 +Y + + + F+ + ++GD+++ Sbjct: 417 ECYYFPSFEEIEKFLLKNCINGDLLIT 443 >gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila RKU-1] gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga petrophila RKU-1] Length = 490 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 147/369 (39%), Gaps = 40/369 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 + G+S S + + F +G +D H+ I ++KGA VVV ++ + + Sbjct: 25 ITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDLDFPHIQVFDS 84 Query: 84 --------PVFGVD---DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 +F D DVL + + I + S+G+ + +LT A+ Sbjct: 85 RYFEAKVASLFFEDPWKDVL-TFGVTGTNGKTTTTMMIYHMLTSLGEKGS--VLTTAVKR 141 Query: 133 IKKTYACIGSYNNHIGVP---LTLARMPVDVDFG--IFELGMSHLGEIRFLTHLVRPHIA 187 I SY + I P L+ M + + G F L +S ++ VR + Sbjct: 142 I-----LGSSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFDVG 196 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T I+ HL E AK +F+ L+ G LN +S + KS + Sbjct: 197 IFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN--ESLADTFNRKSRKI----- 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG SKNAD++L + E + ++ + V IG A N + + L Sbjct: 250 -TFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAAAAIAALHQLG 308 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D +L F EGR + R A G ++D + +P +++ + + +IS Sbjct: 309 YDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVD--FAHSPDALEKLLKNVRKIS--- 363 Query: 368 EGRRIAVLG 376 +GR I V G Sbjct: 364 QGRVIVVFG 372 >gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9515] gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9515] Length = 511 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 35/254 (13%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG + + A++ GA ++ + Sbjct: 13 VGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS+ + ++D L + VA R K +I +TG+ GKTT +L Sbjct: 73 AKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173 L + K A G+ +N G A + + +F I E+ + Sbjct: 133 LKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDDS 230 + R A+ T + HL S +E K ++F EK G LN DD Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVLNIDDP 250 Query: 231 F-----FELLKAKS 239 + F+L K S Sbjct: 251 WISKLSFDLEKGSS 264 >gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis MA-4680] gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis MA-4680] Length = 464 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 22/209 (10%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132 +A L IPV D L ARL IA+ G+ GKTTT ML ++LS+ Sbjct: 86 LARAAELGIPVVHRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLSTLG 136 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + +YA G + P + A G ++ ++ E H P +A++ + Sbjct: 137 LAPSYAIGGDLD----APGSNAL------HGEGDIFVAEADESDRSFHKYAPDVAIVLNV 186 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H +N++ ++EI ++ + + + GT+ + D L + A G++ + ++G+ Sbjct: 187 ELDHHANYASMDEIYASFETFVDRITEGGTLVIAADHEGARELTRRVTASGVRVV-TYGE 245 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 S +AD + +S +EV L G + Sbjct: 246 SADADVCVLSVTAQGLKSEVEVLLDGTEL 274 >gi|291276690|ref|YP_003516462.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter mustelae 12198] gi|290963884|emb|CBG39720.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter mustelae 12198] Length = 490 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 113/278 (40%), Gaps = 24/278 (8%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 IIAIT S GKT+ K L L + + YA S N G+ + +P + I E G Sbjct: 167 IIAITASYGKTSIKNFLYQILRTQYQVYATPRSVNTIKGIVSDINENLPPHTEIYIVEAG 226 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNY 227 G+I + HL+ +I + HL F +E I K FE LE F L + Sbjct: 227 ARQKGDIAEIAHLLNHQYGIIGEVGEQHLEYFKKLENIMQTK---FELLESNRLEFALIF 283 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ F +K+ K I F +LR + E++ E++++ + Sbjct: 284 KDNTFPQYLSKN-----KKIQYFPT------ELRNEQANLEETSFELEIEQNFYTFKTNI 332 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G N+ + + L + T + L P R + +N ++D S+N Sbjct: 333 LGAFNIHNLSAAILLGHHLKIPIPTMQRVLGTLQPIPHRLT--KEVVNGK--MILDSSFN 388 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 N M ++ +I+ +GR++ + + E E S Sbjct: 389 GNLNGMLESV----RIAGLYDGRKVIITPGIIESDEKS 422 >gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae NSW150] gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae NSW150] Length = 469 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 93/438 (21%), Positives = 187/438 (42%), Gaps = 47/438 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 + K H G D ++ + + + N ++VA+ + IPV + + A+ A Sbjct: 64 YLGHKAEHIKGADVVV----RSSAVEWNNPEIVAAREQM-IPV---------IPRAAMLA 109 Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 L IA+ G+ GKTTT +++ +A + ++ IG N +G+ L + P Sbjct: 110 ELMRFRHGIAVAGTHGKTTTTSLVSSVLAEGGLDPSF-VIGGKLNSLGINAQLGQSP--- 165 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219 + + E S + FL ++P +A++T I H+ + + E++ + E L Sbjct: 166 -YFVVEADES---DASFL--FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 219 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G+ + DD E+ K + ++G ++ A ++ W Q S V ++ K Sbjct: 220 YGSAVVCIDDP--EVRKILPFIE--RPTLTYGFTEEAHYRAIDWTQNELISEFTV-IRPK 274 Query: 280 S---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 S +++ G H N L ++ I + L D ++ I+AL F +G G+R++ + Sbjct: 275 SYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKF---QGVGRRFQMLGEK 331 Query: 337 GF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID 391 F L+ + Y +P + + I + P+ + EL + F + Sbjct: 332 KFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLS 391 Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 LA+ L L++I + G + +L + + + L + S+ +GDV++ Sbjct: 392 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 451 Query: 449 VKSSNSCGFYRLINLLLE 466 ++ + S G +NL+ E Sbjct: 452 IQGAGSIGQI-AVNLMQE 468 >gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae D-4968] gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae D-4968] Length = 458 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 92/438 (21%), Positives = 185/438 (42%), Gaps = 47/438 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 + K H G D ++ + + + N ++VA+ + IPV + + A+ A Sbjct: 53 YLGHKAEHIKGADVVV----RSSAVEWNNPEIVAAREQM-IPV---------IPRAAMLA 98 Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 L IA+ G+ GKTTT +++ +A + ++ IG N +G+ L + P Sbjct: 99 ELMRFRHGIAVAGTHGKTTTTSLVSSVLAEGGLDPSF-VIGGKLNSLGINAQLGQSP--- 154 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEK 219 + + E S + FL ++P +A++T I H+ + + E++ + E L Sbjct: 155 -YFVVEADES---DASFL--FLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPF 208 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G+ + DD K + ++G ++ A ++ W Q S V ++ K Sbjct: 209 YGSAVVCIDDPEVR----KILPFIERPTLTYGFTEEAHYRAIDWTQNELISEFTV-IRPK 263 Query: 280 S---MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 S +++ G H N L ++ I + L D ++ I+AL F +G G+R++ + Sbjct: 264 SYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKF---QGVGRRFQMLGEK 320 Query: 337 GF---FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID 391 F L+ + Y +P + + I + P+ + EL + F + Sbjct: 321 KFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVLS 380 Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 LA+ L L++I + G + +L + + + L + S+ +GDV++ Sbjct: 381 LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVIL 440 Query: 449 VKSSNSCGFYRLINLLLE 466 ++ + S G +NL+ E Sbjct: 441 IQGAGSIGQI-AVNLMQE 457 >gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia succiniciproducens MBEL55E] gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E] Length = 488 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 21/223 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 +N +++DSRS+ F AIKG DG FI A+ GA V+ D +S Sbjct: 19 LNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQNQ 78 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IPV + L+ +A T++ +TG+ GKTT ++L + + A + Sbjct: 79 IPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPAVM 138 Query: 141 GSYNNHI------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHI------- 186 G+ N + T + + V F + I +H LV+ I Sbjct: 139 GTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHFAA 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + T ++ HL +E ASAK +F L I +N DD Sbjct: 199 GIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKI-INADD 240 >gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter tengcongensis MB4] gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 154/385 (40%), Gaps = 67/385 (17%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A+ GS GKTTT ++++ L Y+ P L +D G +G S Sbjct: 112 VAVAGSHGKTTTTSLISVILDR--------AGYD-----PTVLVGGEIDAIGGNVRVGKS 158 Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 F+T P+IAVI + HL F I+ I + + + G Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDG 214 Query: 222 TIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQL 276 + DD+ ++K K I ++G ++ +D+Q + K C+ V Sbjct: 215 FVVACKDDANTMHVIKGLE-----KNIVTYGINEKSDWQAKDITYDEKGCAS---FNVYY 266 Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +GK + I G H N L +L + +L D + A + + F +G +R+ Sbjct: 267 RGKFIGHFKLSIPGKHNIYNALASLAVTYLLGVDTEKAKEYIKEF---KGTHRRFEVKGV 323 Query: 336 QGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQ 386 T++D+ Y +PA + A + +++ PH R A+L D E Sbjct: 324 VEGVTVVDD-YAHHPAEIHATLEAAKNYPHKRIIAIFQPHTYSRTKALLSDFAE------ 376 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLV 442 SF D A+ + + +I +++ KD + R V Y + D + +++ + Sbjct: 377 SF--DAADKIIITDIYAAREKDTGIVSSKDLVDLIFKRGKDVLYIKDFDSIVEYLKENTE 434 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 +GD+V+ + + Y + LEE Sbjct: 435 EGDLVL--TIGAGNIYEVGEKFLEE 457 >gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maribacter sp. HTCC2170] gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maribacter sp. HTCC2170] Length = 444 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 34/184 (18%) Query: 62 QKGAGLVVVNTDMVASIGSL--SIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSV 117 +K + V++N D+V + ++P+ + ++ ++++ AAR ATII ITGS Sbjct: 53 EKHSKSVILNADVVMKSPGIPDTVPLIKELKEKLIPVISEIEFAARYID-ATIIGITGSN 111 Query: 118 GKTTT---------KEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 GKTTT +E L + ++ +I ++A + + N+H L ++ +D GI + Sbjct: 112 GKTTTTMLTNHIFKEEGLDVGMAGNIGDSFAKMVAENDHDNYVLEISSFQLD---GINDF 168 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226 RPHIA+IT I P HL + E ++K I E K + + Sbjct: 169 ---------------RPHIAIITNITPDHLDRYEYKFENYVASKFRIAENQSKEDYLIYD 213 Query: 227 YDDS 230 DD Sbjct: 214 ADDE 217 >gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] Length = 487 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 87/395 (22%), Positives = 156/395 (39%), Gaps = 43/395 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + ++ V + DSR + + F AIKG DGH +I A++ Sbjct: 1 MKTLKDILYKVHIEAVTGDTTIAVRELVFDSRKVQLNDVFIAIKGYEVDGHSYIEKAIKA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTT 121 GA + V+ ++ +I + I VD+ AL +A +I +TG+ GKTT Sbjct: 61 GA-IAVICEEIPKNIIN-GITYVQVDNGSSALAVMASNYYGNPSENLKLIGVTGTNGKTT 118 Query: 122 TKEML---------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIF 165 +L T+ + K Y + + + + L +M + V++ Sbjct: 119 IATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQKMNHEGVEYCFM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + + R + + + T ++ HL E K + F+ L K + Sbjct: 179 EVSSHGIHQKRTAGLVFQG--GIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKEAFCLV 236 Query: 226 NYDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 N DD + KAK + +KT AD++ Q E + L+ Sbjct: 237 NIDDKNGLVMMQNTKAKKYTYALKTY--------ADYR----AQILENRLAGLLLKINDN 284 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV IG A N+L +L + ++ +S GR + Y + N+ T+ Sbjct: 285 EVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFE-YFISKNK-ITTI 342 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y P ++K + ++ I G + I V+G Sbjct: 343 VD--YAHTPDALKNVLETINNIRT-GNEQLITVVG 374 >gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 454 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 146/375 (38%), Gaps = 48/375 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT LT A+ T IG N G L Sbjct: 98 LAELMRLRKG---IAIAGTHGKTTTTS-LTAAIFDEAGTDPTVIIGGRLNAYGSNARLGE 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 G F L + + FL + P + V+T + H+ + + I +A Sbjct: 154 -------GEFLLAEADESDGSFLC--LSPVVNVVTNVDLDHVDFYHDQQAIDTAFINFMN 204 Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWM 272 + G + DD+ L + K L Y FG D QLR + C E S Sbjct: 205 KVPFYGMNVVCGDDAGVRRLLPQIKRPVL----TYGFGP----DNQLRAETVTCGETSRF 256 Query: 273 EVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V L G+ + EV G H N L +G+ D ++ L+ F G G+R+ Sbjct: 257 RVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIAADVCLRGLANFR---GVGRRFE 313 Query: 332 CALNQGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEM 381 +G ++D+ Y +PA + A ++ ++ PH R A+ GD C+ Sbjct: 314 RKGERGGVLVVDD-YGHHPAEIAATLATARTCYPGRRLVVAFQPHRFSRTKALFGDFCKA 372 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQS 439 + ++D + +Y S + G +L + + + V Y + D + + Sbjct: 373 FD-----NVDKLLLTEIYPASEAPIPGVSGQSLAQGIRQVSNTDVDYFQDFDAMRAALPE 427 Query: 440 SLVDGDVVVVKSSNS 454 +L GD+ + + S Sbjct: 428 TLRPGDLFLTLGAGS 442 >gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MW2] gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MW2] gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ED133] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 476 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160 A L S A I+ ITGS GKTTT + L + G +IG+PL A D Sbjct: 108 AYLISPAPILGITGSNGKTTTTTWIGNMLEAAGMRPIVAG----NIGIPLCEAAEEADEG 163 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 ++ + EL L R RP +A + +A HL +++ S+KA++F +T Sbjct: 164 NWLVAELSSFQLKGTRAF----RPEVACLLNVAETHLDYHGTMDDYISSKAKLFANQRET 219 Query: 221 GTIFLNYDD 229 LN+DD Sbjct: 220 DRAVLNWDD 228 >gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] Length = 498 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 31/355 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IP 84 + G+ +DSR++ P AF AI G G F+ A GA ++ A + + + I Sbjct: 19 LTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAILFEPPAPAELPAPADAIA 78 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V G+ +GA+ A R+ A ++ +TG+ GKT+T ++L A + IG+ Sbjct: 79 VPGLRARMGAMADQFHGAPSRAMA-MVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLG 137 Query: 145 NHI---------GVPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHIAV 188 + PL L A + D G + M SH L + R V +AV Sbjct: 138 AGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGR--VDAVHYDVAV 195 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + HL + +AKA +F GL+ +N DD+F L A A G++ Sbjct: 196 FTNLTRDHLDYHGDMASYGAAKARLFHRPGLKAA---VVNLDDAFGRQLFAGLPA-GVQP 251 Query: 247 I-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I S + +A + + E+ + G+ V +G N+L G + Sbjct: 252 IGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGRFNVDNLLAVAGTLHA 311 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + LS P RG+ R G T++ + Y P ++K A+ L Sbjct: 312 QGQPLPRIAEVLSALQPI--RGRMNRLGGEDGLPTVVVD-YAHTPDALKQALDSL 363 >gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 472 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 91/396 (22%), Positives = 161/396 (40%), Gaps = 59/396 (14%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------- 132 +SIPV ++L L +L IA+ GS GKTTT M L+ Sbjct: 98 ISIPVIPRGELLAELMRLKYG---------IAVAGSHGKTTTTSMAATILNYAGLDPTVV 148 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + +G N +G DF + E S + FL + P IAV+T + Sbjct: 149 VGGRVGTMGGSNARVG----------HSDFLVVE---SDESDGSFLK--LAPIIAVVTNV 193 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL ++ ++ I +A E + G + + DD+ + L + + +TI ++G Sbjct: 194 DREHLDHYPDLDAIRAAFLEFVNKVPFYGAVIVCLDDANVQGLLPE---IRRRTI-TYGT 249 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGIGYHMAQNMLMTLGIVSILTAD 309 + AD + C + E +L+ ++ ++ H G H N + + + L Sbjct: 250 TAQADMEAGDIS-CGPFAS-EFRLRYRTADLGRFRLHIPGRHNVLNAMAAIAVAMELEVK 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 DT +AL F G +R++ + ++D+ Y +P ++A + Q Sbjct: 308 PDTIREALETF---SGVDRRFQLRGQERGIAVVDD-YGHHPTEIRATLDGARQCG----F 359 Query: 370 RRIAVLGDMCE-------MGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 RRI VL M E ++SFH D V+ +Y S + G +L + + + Sbjct: 360 RRIHVLFQPHRYTRTFHLMDEFARSFHQADSLFVMDIYAASEKPIPGVTAESLVERIRQF 419 Query: 422 IH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 H V Y T+D + ++ +GD+V+ + S Sbjct: 420 GHRGVEYVGTLDRGVDALVAAASEGDLVLTLGAGSV 455 >gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] Length = 480 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 86/389 (22%), Positives = 158/389 (40%), Gaps = 37/389 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V IS D+R I F A KG YD H+ I + V+V + P Sbjct: 24 VADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLV------TEKEFDFPTI 77 Query: 87 GVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + AL+ ++ +++ + I +TG+ GKTTT ++ + A G+ N Sbjct: 78 VVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTARFGTINY 137 Query: 146 HIGVPLTLARMPVDVDFGIFE-LGMSHLGEIRFLTHLVRPH-------------IAVITT 191 I L + + ++ LG++ F+ V H A+ T Sbjct: 138 KIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEVSSHALDQDRVYGINFNYAIYTN 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +++ ++K+++F E L G + N DD + + L I T YSF Sbjct: 198 LSGDHLDYHKDLDDYFNSKSKLFTEYLNGCGIV--NIDDEYGKKLLYLIKDNEILT-YSF 254 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +K A+ + + +++ + + L G+ + +G H N++ + L D Sbjct: 255 NNNK-ANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHHLGIDH 313 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D +A+ F GR ++ + + ID ++ + A +VLS + P + R Sbjct: 314 DRITRAIKTFSNVPGRLEK---LIYNNIYIFIDYAHTDD-----ALENVLSSLRPFRKRR 365 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 I + G C G+ +S +A+V Y Sbjct: 366 IITLFG--C-GGDRDKSKRPRMAKVAEKY 391 >gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] Length = 477 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 128/323 (39%), Gaps = 40/323 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSLSIP 84 ++ I DSR I + F AIKG +GHD+I A+ GA + ++ ++ ++I G I Sbjct: 14 ISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGA-IAIICEELPSNIVNGVTYIK 72 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------TIA 129 V ++ L L+ ++ +TG+ GKTT +L T+ Sbjct: 73 VKDTNEALAFLSA-NYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAGYKVGLLSTVK 131 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + Y + + + + L +M +F E+ + + R T ++ V Sbjct: 132 IMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKR--TEALQFVGGV 189 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL + E K F+GL K N DD K+ A+ ++ Sbjct: 190 FTNLSHDHLDYHNTFAEYRDVKKSFFDGLSKDAFAITNIDD--------KNGAIMLQNT- 240 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTLGIV 303 K+K + L+ + Q +E QL G EV IG A N+L G+ Sbjct: 241 ---KAKKLSYALKSYADYKAQ-ILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVA 296 Query: 304 SILTADVDTAIKALSVFHPKEGR 326 L D A++ LS GR Sbjct: 297 VELGIDKMEALRLLSELESVSGR 319 >gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] Length = 495 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++ + +DSR I E F AI+G DG FI A+ +GA +V+ D G + Sbjct: 27 ISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHVHGQVEFREG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV + ++ L++LA + +I TG+ GKTT +++ L + A +G+ Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9635] gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9635] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21193] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus N315] gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus COL] gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus RF122] gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JH1] gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9781] gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9763] gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9719] gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9299] gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8115] gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6300] gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6224] gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5948] gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5937] gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus D30] gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8117] gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus D139] gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9765] gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A10102] gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus H19] gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus 132] gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9754] gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8819] gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8796] gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus aureus] gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus COL] gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus RF122] gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus JH1] gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9781] gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9763] gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9719] gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9299] gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8115] gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6300] gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6224] gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5948] gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5937] gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus D30] gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus ED98] gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus D139] gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A10102] gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9765] gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8117] gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus H19] gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ST398] gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus 04-02981] gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9754] gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8819] gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8796] gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS01] gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus O11] gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus O46] gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus T0131] gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21189] gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21172] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] Length = 518 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ +S+ F I+G DGHD+I A GA +++ +V+ L P Sbjct: 26 IRGITCNSQKAEEDSLFVCIQGSRADGHDYIEEACNLGASCILIEK-LVSGGRMLKFPE- 83 Query: 87 GVDDVLGALNKLAVAARLR-------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V VL + A+A R K +I +TG+ GK+T M+ L S+ + Sbjct: 84 NVAVVLVKDTREALAGISRIWFGSPADKLKVIGVTGTKGKSTVAVMIREMLESLGQKCGL 143 Query: 140 IGSYNNHIG 148 IG+ +H+G Sbjct: 144 IGTIAHHLG 152 >gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M899] gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M809] gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MN8] gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C101] gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus C160] gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M809] gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] Length = 518 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 149/392 (38%), Gaps = 73/392 (18%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88 D+RS+A + FFA D H FI A+++GA V+V + + +L++P Sbjct: 34 DTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP---- 89 Query: 89 DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ALN+LA +A+ + + + ITG+ GKT+ + ++ AL+++ A IG+ Sbjct: 90 -----ALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184 H G P + D G + M H G + Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV T + HL E +AKA +F E + +N DD+ L A + Sbjct: 201 DIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQGHAR 259 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNML 297 Y + A + + L ++ G +H+ A+ + Sbjct: 260 TIAYGLDSEQGA---------LQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEV 310 Query: 298 MTLGIVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDE 344 TLG ++ L ADV + A+ L+ P GR +R L N +ID Sbjct: 311 QTLGAFNVSNLLGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVID- 369 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ + L ++ G I + G Sbjct: 370 -YAHTPDALEKTLEALRPMAAARGGELICMFG 400 >gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C427] gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C427] Length = 449 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----EKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum DSM 5476] gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum DSM 5476] Length = 463 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I A+TGS GKTTT +++ L + YN H+G + A +P + G ++ + Sbjct: 119 IYAVTGSDGKTTTTTLISEMLKA--------QDYNVHLGGNIGKALLPGIEEIGPDDVAV 170 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + L+ P +AVIT IAP HL +EE K + LN D+ Sbjct: 171 VELSSFQLLSMRQSPDVAVITNIAPNHLDVHGTMEEYIQCKCHLLWHQNAFSKAVLNADN 230 >gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola CNS-205] gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola CNS-205] Length = 511 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 8/196 (4%) Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP +++IT I HL+ + + + +A A+ + G + DD+ L Sbjct: 185 IYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFVVTCADDAGSRRLAETLR 244 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMT 299 A G + +Y++G S +AD +L + + ++ G+S+ + G HM N Sbjct: 245 AEG-RRVYTYGTSTDADLRLTEMASSTRGIRYLAEVDGRSLGEFRLPVPGRHMGLNSASA 303 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +L +D A AL+ F R +R A N L+ + Y +P + A+ Sbjct: 304 VLAAYLLGLPLDAAEAALAAFPGVRRRFERKGVADN----VLVYDEYAYHPTPIALALRT 359 Query: 360 LSQISPHGEGRRIAVL 375 L +++ G+GR I V Sbjct: 360 LREVA--GDGRLIVVF 373 >gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937] gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937] Length = 486 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M+T YA G P V+ G+ + + Sbjct: 122 IAVAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD+ L K +G + I ++G S +AD +L ++Q Q + Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSDDADVRLADYRQVGAQGLFTLAR 276 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 QGK + V + G H A N + + + D D ++AL+ F +G G+R+ Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDDAILRALARF---QGTGRRF 328 >gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] Length = 507 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 86/381 (22%), Positives = 143/381 (37%), Gaps = 52/381 (13%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++GI DSR + + F G DGH F+ A ++GA ++V ++ IG V Sbjct: 24 IISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAVVIVATKEV--EIGESVKAV 81 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-- 141 V D L+ LA A R ++ ITG+ GKTTT +L S+ IG Sbjct: 82 VIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGTI 141 Query: 142 SYNNH----IGVPLTLA---------------RMPVDV-DFGIFELGMSHLGEIRFLTHL 181 SY+ H P T R V V + L EI F Sbjct: 142 SYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDF---- 197 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG--TIFLNYDDS----FFELL 235 +AV T + H+ + AK ++F + +N DD F L Sbjct: 198 ---DVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRKVVNIDDPNAGYFVSLG 254 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K + +FG K+AD + ++ + V+ ++E+ +G H N Sbjct: 255 NPKV------PVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISSGLLGRHNVYN 308 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L + + + A ++ ++ + GR + Q F ++D Y P ++ Sbjct: 309 ILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVE--LVDEEQPFAVIVD--YAHTPDALSR 364 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + + + P R I V+G Sbjct: 365 LLDTVRECGPR---RIITVVG 382 >gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Arthrospira platensis NIES-39] Length = 498 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 38/376 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 + G++ +S + P + F + G DG DF A+ GA +V+ ++ S + Sbjct: 24 ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83 Query: 83 IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP V D+ A ++A A T ++ +TG+ GKTTT ++ L+++ K A Sbjct: 84 IPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKPTAL 143 Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183 +G+ Y G + + P V+ FG+ E+ L + R L + Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQ 203 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV T + HL +++ AKA +F G +N DD + + L A+ LG Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258 Query: 244 IKTIYSFGKS-KNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++S+ S +AD ++ Q + + S + +G + N+L L Sbjct: 259 GDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTPMGSASFSLPL--VGQYNLSNLLAAL 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D+ + L F GR +R + + Q ++D Y P S++ ++L Sbjct: 317 GAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQNITVIVD--YAHTPDSLE---NLL 371 Query: 361 SQISPHGEGRRIAVLG 376 P GR I V G Sbjct: 372 KASRPFIPGRMICVFG 387 >gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233] gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233] Length = 914 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 16/145 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---------ARM 156 ++ I+A+TG+ GKTT M+ S+ + + I L + ARM Sbjct: 502 ARIPIVAVTGTNGKTTCSRMIGHIFKSMGRKVGMTSTDGVVIDDRLVIRSDASGPRSARM 561 Query: 157 PVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKA 211 + VDF +FE+ G +R R +AV+ +AP HL +E++A K Sbjct: 562 VLQNPRVDFAVFEVARG--GILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQ 619 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLK 236 I E + K+G+ LN DD ++ Sbjct: 620 VIVEAVPKSGSAVLNADDPLVAGMR 644 >gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp. Y412MC10] gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp. Y412MC10] Length = 477 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 29/185 (15%) Query: 53 GH-DFILHAVQKGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLR 105 GH D ++H G L+V N + S+ L IP+ + ++ +A RL Sbjct: 63 GHPDELIHP---GVALLVKNPGIPYSVPPVQKAIELEIPI---------VTEVEIAYRL- 109 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 +A +I ITGS GKTTT + L + + G +IG PL+ A + D+ + Sbjct: 110 CEAPMIGITGSNGKTTTTTWVGKLLENAGLSPIVAG----NIGTPLSEAAATATEHDWMV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T RP I+ + + HL G+++ ++KA++F T Sbjct: 166 VELSSFQLKG----TEAFRPRISCLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAV 221 Query: 225 LNYDD 229 LN+DD Sbjct: 222 LNWDD 226 >gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU144] Length = 449 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + I + G + +IG + V D Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDIFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNY 227 + NY Sbjct: 219 LICNY 223 >gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 29/253 (11%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+A+ + P+ + +++DSR A + F AI G DG +I A+ +G V+ Sbjct: 6 LRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIA 65 Query: 71 NTDMVASIGSL----SIPVFGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKT 120 D A G++ IPV + + L+ LA A LR +I +TG+ GKT Sbjct: 66 EADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLR----LIGVTGTNGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNN----HIGVPLTLARMPVDVDFGIFEL--GMSHLGE 174 T ++L + +T A +G+ N + VDV + L + L Sbjct: 122 TITQLLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAA 181 Query: 175 IRFLTH-LVRPHIAVI-------TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +H LV+ +A + T ++ HL +E AK +F +G +N Sbjct: 182 MEVSSHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFS-THHSGEKIIN 240 Query: 227 YDDSFFELLKAKS 239 DD + AKS Sbjct: 241 ADDEVGQRWLAKS 253 >gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcus flavefaciens FD-1] Length = 479 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 89/391 (22%), Positives = 150/391 (38%), Gaps = 48/391 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +DLL+ +G + + I+ D+R +A F +KG +DGH ++KGA Sbjct: 3 LYDLLENNAETKLGNIE---ITSITDDTRKVAEGCLFVCVKGGSFDGHTAAAEMLEKGAA 59 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV D+ +G I + G + A K +I +TG+ GKTT ++ Sbjct: 60 AVVCEHDL--GLGDRQILTDNSRRLYGMMCS-AWFGHPEKKLHMIGVTGTNGKTTITNVI 116 Query: 127 TIALSSIKKTYACIGSYNNHIG---------VPLT------LARMP------VDVDFGIF 165 L +G+ N IG P+ L RM V ++ F Sbjct: 117 KHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRMVKAGCEYVVMEVSSF 176 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L + +G F T AV T + HL +E+ AK +F+ + + Sbjct: 177 GLVQNRIGASWFDT-------AVFTNLTQDHLDYHKDMEDYYQAKKMLFDICD---CALV 226 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + + L + +G + SF AD+ K S S GKS V Sbjct: 227 NIDDEYGKRLYGE---IGCEK-QSFSVKGCADYTADGIKIKSTGSSFWFCKGGKSHLVKC 282 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N+ + + VD I A+ ++ +GR + + FT+I + Sbjct: 283 RMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKGRCEVIPTGRD---FTVICD- 338 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ ++L + + + R I + G Sbjct: 339 YAHTPDALE---NILRSVREYTDNRLICLFG 366 >gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] Length = 496 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 74/338 (21%), Positives = 128/338 (37%), Gaps = 61/338 (18%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSIP 84 V+ I+ DSR+ F A KG D H F + +++G +VVVN ++ + + +P Sbjct: 23 VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELELDGEVTQVVVP 82 Query: 85 VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + L VA+ L + T +TG+ GKT+ M+ + + K Sbjct: 83 -----------DTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKN 131 Query: 137 YACIGSYNNHIG---------VPLTLA------------RMPVDVDFGIFELGMSHLGEI 175 A +G+ I P T++ + + G+S LG + Sbjct: 132 SAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLS-LGRL 190 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231 R V +A+ + + HL +E AK+ +F E L K + LN DD F Sbjct: 191 RG----VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDF 246 Query: 232 FELLKAKSHALGIKT---IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 SH L T ++++G A F + + + + V + Sbjct: 247 -------SHYLASVTPYEVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGDYRVKSPYV 299 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 G N++ + V A ++ I A++ P EGR Sbjct: 300 GRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGR 337 >gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] Length = 499 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 28/225 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I DSR + F I+G + DGH +I A++KGA VV+ D+ + S I Sbjct: 23 IDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKGAVAVVIEKDL--EVYSEDITYI 80 Query: 87 GVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V+D +G L L++ ++I +TG+ GKTTT ++ L +G+ Sbjct: 81 RVNDSRETMGYLASTFYNYPLKN-LSLIGVTGTNGKTTTTYLIKAILEEAGFNTGLVGTI 139 Query: 144 NNHIG---VPLT------------LARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185 N IG +P T ARM VD G+ M SH +++ + + Sbjct: 140 KNIIGDETLPATRTTPESLDLYRLFARM---VDSGVTHAVMEVSSHALDLKRVEGM-EFK 195 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 I V T I+ HL ++E AK+ +F LE G +N DDS Sbjct: 196 IGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPGGWAVVNIDDS 240 >gi|34763168|ref|ZP_00144135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887166|gb|EAA24270.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 305 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 40/280 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D +++ +EA H DG +F + K G+ N V + I + +D++ Sbjct: 54 DKKAMRSEEAL-----NHLDGIEFFI----KSPGIPYNN--FVKEVQKRGIKI--LDEIE 100 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 A N + + +++K IIAITG+ GK+TT T +S + +Y +IG L+ Sbjct: 101 IAYNYM-IEKGMKTK--IIAITGTNGKSTT----TAKISDMLNHAGYRAAYAGNIGRSLS 153 Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + D+DF EL L I +P+I++I + P H+ ++ +E K Sbjct: 154 EVLLKEKDLDFISLELSSFQLENIENF----KPYISMIINMGPDHIERYNSFDEYYDTKF 209 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270 I + + N DD E ++ + K I S K K AD ++ K C E S Sbjct: 210 NITKNQTEDLYFIENIDDVEIE---KRAKQIKAKRI-SVSKFKKADIFVKNDKICHGENS 265 Query: 271 WMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 ++V +L K G H +N L + I T D Sbjct: 266 IIDVDKLSLK---------GIHNLENTLFMVATAEIFTID 296 >gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella adiacens ATCC 49175] gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella adiacens ATCC 49175] Length = 452 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYN 144 VD L ++ +A R+ + T++ ITGS GKTTT + + L ++T+AC Sbjct: 93 VDKGLPVYTEIEIAQRVM-EGTVLGITGSNGKTTTTTLTNLMLHESFPERRTFAC----- 146 Query: 145 NHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 +IGVPL+ LA + D + EL L I RP +A I I AHL Sbjct: 147 GNIGVPLSQLAEDSKETDIYVTELSSFQLMGIEAF----RPKVACIVNIFSAHLDYHGSR 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 EE AK +I + +T FL Y+ F EL + Sbjct: 203 EEYVKAKLQITKN--QTEEDFLVYNADFPELYE 233 >gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor hydrothermalis 108] gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 83/382 (21%), Positives = 149/382 (39%), Gaps = 43/382 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDV 160 +R+ +IAI G+ GKTTT M+ L K Y +G++ +G + Sbjct: 98 MRNFKNVIAIAGTHGKTTTTSMIGYILK--KANYNPTILVGAFVKQLGGNFVIGSK---- 151 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D+ + E ++F P I VI I HL F I+ I ++ + + + + Sbjct: 152 DYLVVEACEYVDSFLKF-----NPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTS 206 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G + N DD + + +K H + + AD C++ + E ++ + Sbjct: 207 GFLVANCDDKNVKDIISKFHT----QVVCISTKEKADI-FADNISCND-GYYEFDVKNNN 260 Query: 281 MEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 E++ H I G+H N L + S L + T +ALS F G +R Sbjct: 261 NEILAHIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEFC---GASRRLEKVGEF 317 Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQS 387 L D+ Y +P +KA ++ L +IS PH R +L + E +L+ Sbjct: 318 NGIYLYDD-YAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKLADK 376 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + NI + + L LK+ I Y D + ++ GD++ Sbjct: 377 VIVTDVYAAREKNIFGITSEKLY-LKLKEI---GIDCEYISNFDDIACYVVKEAKKGDII 432 Query: 448 VVKSSNSCGFYRLINLLLEEFP 469 + + I+++L++ P Sbjct: 433 ATIGAGDVN--KCIDIILKKAP 452 >gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria lactamica ST-640] gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria lactamica 020-06] Length = 445 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 75/188 (39%), Gaps = 35/188 (18%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLA---RM 156 R +IAITGS GKTT ++ Y CI +IG P+ A R Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAGNIGTPVLEAEWQRA 157 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D + EL L T +RP A + I+ HL + + + A K +IF G Sbjct: 158 GKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG 213 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQ--S 270 G LN DD+F +K + + F ADF L + KQ +E + Sbjct: 214 ---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLERETGRLKQGNEDLIA 265 Query: 271 WMEVQLQG 278 ++ LQG Sbjct: 266 TQDIPLQG 273 >gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 258 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 38/217 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDI-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFE-----LGMSHLGEIRFLTH 180 + +G P TL R + D+ + E L M + E F Sbjct: 138 NNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKECNF--- 194 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 IAV T + HL +E K+ +F L Sbjct: 195 ----KIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 227 >gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] Length = 503 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 85/379 (22%), Positives = 146/379 (38%), Gaps = 43/379 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + +AF A G DG F+ K A T +V + G + G D Sbjct: 23 LRTDSRLVQRGDAFIAWPGHATDGRRFV-----KAALAAGAATCLVEAEG---VDAHGFD 74 Query: 90 DV-LGALNKLAVA---------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 D +GAL L A + + ++A TG+ GKT+T ALS + + Sbjct: 75 DARIGALPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGV 134 Query: 140 IGS----------YNNHIGV-------PLTL---ARMPVDVDFGIFELGMSHLGEIRFLT 179 +G+ HI P+TL R D F + S +G + Sbjct: 135 VGTLGIGEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRL 194 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +R +A+ T HL ++ +AK +F G +N DD+ L A+S Sbjct: 195 AALRIEVALFTNFTRDHLDYHGSMDAYWAAKRVLF-GWPGLKAAAVNLDDAQGAEL-ARS 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNML 297 A + ++++ ++ D +LR + L G ++ V IG + A N+L Sbjct: 253 LAGHVPELWTYSLERD-DVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLL 311 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +G + L + A++ + P GR ++ + Y P +++ A+ Sbjct: 312 AVIGGLRALGVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKAL 371 Query: 358 SVLSQISPHGEGRRIAVLG 376 L ++ GR + V G Sbjct: 372 GALRPLAAARGGRLLCVFG 390 >gi|289806271|ref|ZP_06536900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 136 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 8/83 (9%) Query: 313 AIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 A+KA L+ GR + + NQ ++D++YNAN SM AA+ VLS++ G R Sbjct: 55 AVKAGLAALKAVPGRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYR 107 Query: 372 IAVLGDMCEMGELSQSFHIDLAE 394 + V+GDM E+G S++ H+ + E Sbjct: 108 VLVVGDMAELGAESEACHLQVGE 130 >gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] Length = 506 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ DSR + FFA+KG DG+ F+ A++ GA VVV+ + IP Sbjct: 23 IEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGAVAVVVDGTLTPQ----GIPWV 78 Query: 87 GVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A++++A A AT ++ ITG+ GKTT ++ L A +G+ N Sbjct: 79 RVADARLAMSRMAAAFYGFPTATLPLVGITGTNGKTTITYLIESILEKSGIPAAVLGTVN 138 >gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC 43325] gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC 43325] Length = 482 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 147/376 (39%), Gaps = 67/376 (17%) Query: 111 IAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IAI G+ GKTTT M+++ A + + T+ G N H+G L + D Sbjct: 127 IAIAGTHGKTTTTAMISMVYAEAGLDPTFVNGGLVKSAGTNAHLGCSRYLIAEADESDAS 186 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P ++V+T I P H+ ++G EE+ L G Sbjct: 187 FLHL---------------QPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGL 231 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSM 281 L DD E L K +G + + ++G S+ AD+++ ++Q Q V G+ + Sbjct: 232 AVLCADDPVLEELMPK---VG-RQVITYGFSEKADYRIEDYQQTGFQGHYTVMTPSGERI 287 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQG 337 +V+ + G H A N L + + + + AL+ F +G G+R+ G Sbjct: 288 DVLLNVPGRHNALNATAALAVAKEEGIENEAILAALADF---QGAGRRFDQLGHFIRPSG 344 Query: 338 FFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQS 387 L+D+ Y +P + I Q PH R + D ++ LSQ Sbjct: 345 KVMLVDD-YGHHPTEVAVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQV--LSQ- 400 Query: 388 FHIDLAEVLSLYNISHVWLSG---------FHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 +D +L +Y ++G L D + S H E +D + Sbjct: 401 --VDALIMLDVYAAGEAPIAGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQI----- 453 Query: 439 SSLVDGDVVVVKSSNS 454 L DGD+++ + + + Sbjct: 454 --LQDGDLILAQGAGN 467 >gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 442 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 52/353 (14%) Query: 105 RSKATIIAITGSVGKTT-TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +K IIAITGS GK++ TK + I + TY IG +IG+P L + F Sbjct: 105 ETKVPIIAITGSNGKSSVTKIVKEIIQKAGFTTY--IGG---NIGIP-ALNIVNKFAHFF 158 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 I EL L T ++ +IA I I P HL+ +S I+E AK +I++ + Sbjct: 159 ILELSSFQLER----TFSLKAYIATILNITPDHLNRYSSDIKEYEKAKQKIYKN---SKI 211 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N D+ + A K I SFG + D+ L ++ L KS++ Sbjct: 212 CIINVDNP----VTINRQAQLTKCI-SFG-VHSGDYHL-------SHTYTNTWLCYKSLK 258 Query: 283 VVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQ 336 +++ G H NML L IV L +++ L F G +RC Sbjct: 259 LINTKKLKLSGRHNYINMLSALAIVHELKISFKISVRILKNF-----LGLPHRCQKVYKN 313 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 T I++S + N AS K+AI I+ G+ R I +G +S +++L + + Sbjct: 314 NNITWINDSKSTNIASTKSAI---QSINTKGKIRLI--------LGGDKKSSNLNLLKPI 362 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 N ++ G L + P + ET+ + I + GDVV++ Sbjct: 363 LKNNAIVIYCYGKDKKELFNLYPHKSKIF--ETLQEVMQHISVQVQPGDVVLL 413 >gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 511 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 142/362 (39%), Gaps = 66/362 (18%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F AIKG DGH FI A + GA + VV +I + + +++A+A Sbjct: 41 FVAIKGYVTDGHKFIKKARELGAEIAVVEDYSEENIKQIRVEN----------SRIALAD 90 Query: 103 RLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---IGVP-- 150 R+ +I IT + GKTTT M+ L K+ IG+ + +P Sbjct: 91 MARNFYEDPSKDMNVIGITATNGKTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSV 150 Query: 151 ------LTLARMPVDV-DFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 LTL D+ D G+ ++ M S + + + I + H+ Sbjct: 151 LTTPESLTLQSYFRDMKDKGVTDVTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHG 210 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-------------LGIKTI- 247 E K+ + ++ LN DD L+ K+ A GI+ + Sbjct: 211 SFENYFRFKSRLIRHAKEDALAILNADDEKIYSLRDKTKAQVLSFSLESNDAEFGIQDLD 270 Query: 248 YSFGKSK-----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S GK K N D +++ + E+S ++L +GY N L+ + I Sbjct: 271 LSSGKGKFTFKINRDIKIKDF--ILEKSEFNIEL---------GSVGYSSVMNSLVAIII 319 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D +T +AL F +G +R+ ++ F ++D+ + AN ++ A + L + Sbjct: 320 GLCLKIDTETIKRALKNF---KGVERRFELIFDEE-FKILDDHF-ANEKNIDATMETLKE 374 Query: 363 IS 364 + Sbjct: 375 MD 376 >gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria flavescens SK114] gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria flavescens SK114] Length = 445 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDVFCHAMKRAG-----REVKWFSLEHKADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ +E + ++ LQG Sbjct: 252 ETGRLKQGNEDLIATQDIPLQG 273 >gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium sp. P08] Length = 529 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 97/411 (23%), Positives = 161/411 (39%), Gaps = 45/411 (10%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT DL+ ++ G + G P + GI++DSR + P + + ++G H G F A + Sbjct: 27 WT--DLMASLDGCRADGNGPA--ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAES 82 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA V+ + +PV VDD A+ + T+ ITG+ GKTT Sbjct: 83 GAVAVLTDEHGAKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTT 142 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLAR----MPVDVDF-GIF----ELGMSH 171 T ++ L + IG+ + G L AR P D G+F E G S Sbjct: 143 TAFLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASD 202 Query: 172 LGEIRFLTHLVRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGT 222 + + +H + + T + HL +++ AKA +F L + G Sbjct: 203 V-VMEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGV 261 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I N DD L + A G++ + + + +D+Q+ W + + +V Sbjct: 262 I--NVDDPRGRQLIERMQANGVRAVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERT 318 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT- 340 + G +N M L ++ D L S P G+ R L T Sbjct: 319 LELSLPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQVP----GRMERVDLGADAPTA 374 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG-----DMCEMGELSQ 386 L+D + P ++ +A+ ++ GR IAVLG D + G + Q Sbjct: 375 LVD--FAHTPQAIASALDAARSLA--DSGRLIAVLGAGGDRDAVKRGPMGQ 421 >gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 510 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 102/259 (39%), Gaps = 30/259 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 P W LL+ S G+ VP + + +DSR P F A+ G G A Sbjct: 8 QPDWRLSTLLEGFAAVSPGLDVP---LRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEA 64 Query: 61 VQKGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117 + +GA V+ V + L +P V + L ++A +I +TG+ Sbjct: 65 LARGAVAVLWEPAPGVEAPVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTD 124 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI---------GVP--LTLARMPVD-----VD 161 GKT+ + L L IG+ + P L+L R D V Sbjct: 125 GKTSVSQFLAQTLYQESGRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVR 184 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEK 219 + + E+ L + R + IAV+T ++ HL +E A AKA +F GLE Sbjct: 185 YTVMEVSSHALVQGRINGAAL--DIAVLTNLSRDHLDYHDSMEAYAEAKARLFRWPGLE- 241 Query: 220 TGTIFLNYDDSFFELLKAK 238 T LN DD+F L A+ Sbjct: 242 --TAILNLDDAFGRKLAAE 258 >gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] Length = 488 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 97/378 (25%), Positives = 158/378 (41%), Gaps = 48/378 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSI 83 + DSR + + F A+ G + DG FI AV+ GA +VV + + AS+ + Sbjct: 19 VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78 Query: 84 PVFGVDDVLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V +D AL +LA AR R S+ I+ +TG+ GKTT+ +L + + Sbjct: 79 RVVYHEDPREALWRLA-EARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVL 137 Query: 141 GS----YNNHI-GVPLT----------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ + H PLT LA+M VD + E+ + + R V Sbjct: 138 GTVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCG--VPF 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-FELLKAKSHAL 242 A T + HL +E KA +F L + + +N DD + LL+ AL Sbjct: 196 AGAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCPRAL 255 Query: 243 GIKTIYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 SFG + + W + +E + + L+G++ E+ +G A N L+ Sbjct: 256 ------SFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASN-LL 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 T+ +++ T KAL F GR +R +QG +D ++ + A ++ Sbjct: 309 TVQALALETGLDPGQFKALESFTGVCGRLERVEN--SQGLNVFVDYAHTPD-----ALVN 361 Query: 359 VLSQISPHGEGRRIAVLG 376 VL + G R I V G Sbjct: 362 VLKALRGAGFKRIITVFG 379 >gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] Length = 581 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 27/263 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS+DSR + PQ+ + A+ G G F A++ GA ++ + +G +PV Sbjct: 63 VTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPVPVL 122 Query: 87 GVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGS 142 +++ +G L L + A+TG+ GKTT+ ML ++ + + IG+ Sbjct: 123 VTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGT 182 Query: 143 YN---NHIGVP--LTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAV 188 + + VP +T P V I + +H + H +A Sbjct: 183 IQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAG 242 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247 T + HL +E +KA++F E+ + DD + E + A +G + + Sbjct: 243 FTNLTQDHLDLHGTMEHYFESKAQLFT-PERAELAVITADDEWGEKMFSAACEQMGAQQV 301 Query: 248 YSFGKSKN-------ADFQLRKW 263 + ++ A+F R W Sbjct: 302 HRLVTARGAGLAEVPAEFGARDW 324 >gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas albilineans GPE PC73] gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate ligase protein [Xanthomonas albilineans] Length = 494 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 34/394 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82 V+G+++DSR++ P +AF AI G G F+ A GA ++ D+ AS +++ Sbjct: 22 VSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAPADLPASADAIA 81 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P G+ +GA+ + T++ +TG+ GKT+ ++LT A + IG+ Sbjct: 82 VP--GLRARMGAMAD-QLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGTCSGSIGT 138 Query: 143 YNNHI---------GVPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHI 186 + PL L A + D G + M SH L + R V + Sbjct: 139 LGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGR--VDAVHFDV 196 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIK 245 AV T + HL + +AKA +F + +N DD+F +LL A AL Sbjct: 197 AVFTNLTRDHLDYHRDMAAYGAAKARLF-AMPGLRAAVVNLDDTFGRQLLHALDPALRRI 255 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G+ A + + ++ + + + +G N+L G + Sbjct: 256 GVSSRGRD-GATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAGALYA 314 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L L+ P GR R Q L+ Y P +++ A+ L Sbjct: 315 LDVPPVRIAATLAQLQPIRGRMNRLGGRDAQ---PLVVVDYAHTPDALEQALQSLRD--- 368 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 H +GR + V G E + +A+ LS Y Sbjct: 369 HAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDY 402 >gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium vinosum DSM 180] gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium vinosum DSM 180] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 31/273 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A + AITGS GK+T ++ + ++ + +G ++G P+ L + DV+ + EL Sbjct: 117 APLCAITGSNGKSTVTTLVGL-MARLAGQRVAVG---GNLGEPV-LDLLAPDVERYVVEL 171 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L + L R AV+ ++ HL ++G+++ A KA I++G +N Sbjct: 172 SSFQLETVPSL----RADAAVVLNVSADHLDRYAGLDDYARTKARIYQGAR---IAVVNR 224 Query: 228 DDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + +G ++ G + +DF +R + QSW+ QG+ + Sbjct: 225 DDPIVAAMPRDPEREIG----FTLGVPEGSDFGVRVLEG---QSWI---CQGEEPILPTA 274 Query: 287 GI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 I G H N L L + + A +AL VF G R + D Sbjct: 275 AIRLPGRHNLANALAALALAQASAIPMAGACEALRVF---PGLPHRSEFVAERAGARWYD 331 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +S NP + AA+ L I G GR + + G Sbjct: 332 DSKGTNPGATIAALEGL--IPEDGSGRVVLIAG 362 >gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740] gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes] Length = 481 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/305 (22%), Positives = 123/305 (40%), Gaps = 52/305 (17%) Query: 95 LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LN+ A AA+ + TIIAITGS GKT+ K L L+ K +A S N G+ Sbjct: 143 LNRYATAAKDKLASMPNLTIIAITGSYGKTSLKNFLAQILNDNFKVHASPRSVNTFAGIV 202 Query: 151 LTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + P+ D I E G G+I+ + L+ H ++ + H+ F +E + Sbjct: 203 ADINENLSPLS-DIYIAEAGARTRGDIKEIGVLLEHHYGIVGKVGEQHMEYFRTLENVRE 261 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCS 267 K FEL ++ +K ++S+ G + + + + + Sbjct: 262 TK---------------------FELAQSPR----LKELFSYEGNTPPSGIKATSFP--T 294 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA---------DVDTAIKALS 318 E ++ L+G S E++ G Y +L + +I A ++ + ++ Sbjct: 295 ETRNIKATLKGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQRQVA 354 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P R ++ L ++D+S+N N M AI ++S GR++ V + Sbjct: 355 RLKPIPHRLQKMEVNLK----LILDDSFNGNLEGMLEAI----RLSSLYYGRKVIVTPGL 406 Query: 379 CEMGE 383 E E Sbjct: 407 VESTE 411 >gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-208] Length = 339 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 35/292 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 6 LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 66 AIIAENQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 121 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL ++E A+AK+ +F L + Sbjct: 181 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 LN DD+ ++ + A + +FG + ADF+ + S S ++ Sbjct: 239 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDL 286 >gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus oceani AFC27] gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus oceani AFC27] Length = 463 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 KA +I ITGS GK+T +L +A + ++ A ++G P L L PV D I Sbjct: 122 KAPVIGITGSNGKSTVTSLLEAMARQAGRQVLA-----GGNLGTPALELLEKPVP-DLYI 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T+ + A + I+P H+ + ++ AKA I+ G TGT+ Sbjct: 176 LELSSFQLET----TYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYRG---TGTMV 228 Query: 225 LNYDD 229 +N DD Sbjct: 229 INADD 233 >gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio shilonii AK1] gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio shilonii AK1] Length = 442 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 154/357 (43%), Gaps = 57/357 (15%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + LT A++ +G +IGVP L + ++ D + EL Sbjct: 110 VIAITGSNGKSTVTD-LTGAMAKAAGINVGVGG---NIGVP-ALDLLELNADLYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ ++ ++ H+ + G+E+ A AK IF E +N D+ Sbjct: 165 FQLE----TTYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIFFNAEHA---LVNRDE 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSMEVVH 285 S L + +FG ++ DF +R + Q W+ E + + +V Sbjct: 218 P------ETSPELAGLPVATFGFNEQ-DFGMR---EIDGQVWLVDNGETIISTDQLRLV- 266 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLID 343 G H N L+ ++ + + + L+ + G +RC + ++ ++ Sbjct: 267 ---GKHNWSNALVACALLKLSGINYRKGLACLAAY-----TGLSHRCQVVADEKGVKWVN 318 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +S N AS AA+S L+ EG+ ++G + + + S+ LA+ LS N+ Sbjct: 319 DSKATNVASTLAALSGLTL-----EGKLYLLVGGVGKGADFSE-----LAKPLSELNVKL 368 Query: 404 VWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G +AL P ++ +T++ + I L GD+V++ S +C + Sbjct: 369 CCFGRDGEEFMALH---PSAVRY---DTLNNVLTDITPELQKGDMVML--SPACASF 417 >gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus warneri L37603] gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus warneri L37603] Length = 449 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ ++ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKNSRLTGRLSGNIGYVASKVAQEVSSKEY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRHLIESENLKAKT 238 >gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum NCTC 2916] gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum NCTC 2916] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEDYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] Length = 492 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/419 (21%), Positives = 172/419 (41%), Gaps = 55/419 (13%) Query: 9 DLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L++AI ++ + G + GI+ S + P F KG +D H+ ++KGA Sbjct: 5 NLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEIIKKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTK 123 +VV + S+ P V D A + L+ +K I ITG+ GKTT Sbjct: 65 SFLVVEHPI-----SVDFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITGTNGKTTAA 119 Query: 124 EMLTIALSSIKKTYACIGS-YNNHIG---------VP-----LTLARMPVD-------VD 161 + L ++ + +G+ Y + +G P L + VD ++ Sbjct: 120 HLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKHFVME 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L M + ++F IA +T I HL +E K IF+ L++ G Sbjct: 180 VSSHSLAMKRVESVKF-------DIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEFG 232 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 ++ D F ++ + K IY G S+N+D+++ + + ++ + Sbjct: 233 IAVVS--DEFEHIVNKRVK----KVIY--GMSENSDYRILSAEIDKFGTNFVLKSRFGEH 284 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + G H A N + + + L D+++ I+A+ F EGR + R G + Sbjct: 285 KCSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIV 344 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +D + +P +++ + +I+ GR I V G G+ + +AEV+ Y+ Sbjct: 345 VD--FAHSPDALEKTLITARKIAS---GRIITVFG---AGGQADKGKRPMMAEVVCRYS 395 >gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069] gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069] Length = 489 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 162/369 (43%), Gaps = 48/369 (13%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT ++ A + T+ IG N G + AR+ F I E Sbjct: 124 VAVAGTHGKTTTTSLIASIFAEGGLDPTF-VIGGLLNSAG---SNARLGTS-RFFIAEAD 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL ++P +AV+T I H+ + G + + + + L G + Sbjct: 179 ES---DASFLH--IQPMVAVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVMCI 233 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVH 285 DD + + + + ++G S++AD + + Q +S +V + +E+ Sbjct: 234 DDKTVQEIMPRV----TRPTVTYGFSEDADVRAVDFTQSGTKSHFKVIRRDYDGELEITL 289 Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338 + G H QN L +++ T D D AI KALS F G G+R++ ++ Sbjct: 290 NLPGRHNVQN---ALAAIAVATEDGVSDQAIQKALSEFG---GIGRRFQMYGDFKVDGKT 343 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEV 395 TL+D+ Y +P+ + A I + + P RR+ ++ +L + F L+EV Sbjct: 344 ITLMDD-YGHHPSEVMATIEAMRRSWPE---RRLVMVYQPHRYSRTRDLYEDFSKVLSEV 399 Query: 396 LSLYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 +L + V+ +G + D +L RSI + E + L + + L DGDVV Sbjct: 400 DALL-LLEVYAAGEEPIPGADSRSLCRSIRQRGKIEPIHVEKIAQLPELLSNILQDGDVV 458 Query: 448 VVKSSNSCG 456 V + + + G Sbjct: 459 VTQGAGNVG 467 >gi|167945530|ref|ZP_02532604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 305 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 29/199 (14%) Query: 80 SLSIPVFGVD-----DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 SL PV G V+G + A AA A IIAITGS GK+T +T L + Sbjct: 6 SLQTPVIGAAIERGVPVVGDIELFAQAA----NAPIIAITGSNGKST----VTTLLGEMA 57 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 K + ++G P L + DV + EL L T +R +AV+ IA Sbjct: 58 KVAGLNVAVGGNLGEP-ALDLLDEDVQLYVVELSSFQL----ETTQSLRAKVAVVLNIAA 112 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK-SHALGIKTIYSFGKS 253 H+ + +++ +AKA ++ E+ +N DD + A + LG ++ G+ Sbjct: 113 DHMDRYVSLDDYIAAKAVVYRNAEQR---VVNRDDPRVVAMVADLDNTLG----FTLGEP 165 Query: 254 KNADFQLRKWKQCSEQSWM 272 + DF +R+ + + W+ Sbjct: 166 EGEDFGVRR---VAGKRWL 181 >gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 465 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 93/448 (20%), Positives = 174/448 (38%), Gaps = 90/448 (20%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DG D +++ A + N +M+ + L+IP +LG + ++ + Sbjct: 66 DGADLVVYT----AAVKEDNPEMIRA-RELNIPTIDRATLLGEI--------MKKYTYGV 112 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 + GS GKTTT ++++ L + +Y+ P L VD+ G +G S Sbjct: 113 GVAGSHGKTTTTSLISVLLEEM--------NYD-----PTVLVGGEVDIIGGNVRVGNSE 159 Query: 172 LGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 F+T P+IAVI + HL F I+ I + + + G Sbjct: 160 Y----FITEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPNDGF 215 Query: 223 IFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + DD + +LK + + I +FG N + + K E+ + S Sbjct: 216 VVACGDDPNTMSVLKNVN-----RNIITFGLDSNCTWNAKNIK-FDEKGF-------PSF 262 Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 +V H+G +G H N L TL + +L D+ + F +G +R+ Sbjct: 263 DVYHNGTFVERFELSIVGKHNILNALATLSVCHLLGVDIKKTPDIIKKF---KGTHRRFE 319 Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382 +ID+ Y +P +KA +S ++ PH R ++L D Sbjct: 320 FKGTIDGAVIIDD-YAHHPTEIKATLSSALNYPHNRIICVFQPHTYTRTYSLLND----- 373 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQ 438 + SF D A++ + +I ++ +D R V+Y + + +++ Sbjct: 374 -FAASF--DDADITIITDIYAAREKDTGIVRAEDLANLIKDRGNEVYYIKEFSDIVDYLK 430 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ +GD+V+ + Y + N+LL Sbjct: 431 GTIKNGDLVITIGAGDV--YEIGNMLLN 456 >gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp. BAL3] gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp. BAL3] Length = 467 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 30/266 (11%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + +IAITG+ GK+TT ++ L T G +IG+ + P + E Sbjct: 115 RPWVIAITGTNGKSTTTALIGWVLQQAGLTVHVGG----NIGIGVLALPEPTPGAVYVIE 170 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + L LT P A++T I+P HL G+E +AK IF+ + ++ Sbjct: 171 VSSYQLD----LTTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQ--SRKTAPYVG 224 Query: 227 YDDSF----FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 DD + ++ LKA+ A+ ++ + D L + W+ G+ Sbjct: 225 IDDPYGFAIWQELKAEGRAVDPVSV-----ERPMDDDLGMYLM---DDWLTYNAGGRPAP 276 Query: 283 VVHHG-----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 +V G H AQN V+ + +T +K L F G R + G Sbjct: 277 IVDLSKARSLPGRHNAQNAAFAFLAVNDMGIPEETVVKGLLTF---PGLAHRMEAVGHIG 333 Query: 338 FFTLIDESYNANPASMKAAISVLSQI 363 I++S N + + A++ ++ Sbjct: 334 HVRFINDSKATNADAARQALASYPKV 359 >gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas europaea ATCC 19718] gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas europaea ATCC 19718] Length = 521 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 25/217 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + P + F A G +D + I A+ +G ++ + IP GV + Sbjct: 32 DSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEKQGFSWKPEWKIPNLGVAGLR 91 Query: 93 GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-------- 142 K+A A ++ ITG+ GKTT + A++++ K A IG+ Sbjct: 92 HEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKTAVIGTLGHGFPGA 151 Query: 143 -YNNHIGVPLTLARMPVDVDF---GIFELGM---SH-LGEIRFLTHLVRPHIAVITTIAP 194 Y + P + + ++ G L M SH L + R + +AV+T + Sbjct: 152 LYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSEF--AVAVLTNLTR 209 Query: 195 AHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDD 229 HL ++ A+AKA++F EGL+ LN D+ Sbjct: 210 DHLDYHDSMDAYAAAKAKLFFWEGLQYA---VLNLDE 243 >gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha275] Length = 260 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 64/154 (41%), Gaps = 25/154 (16%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + A KA+IF G G LN DD+F +K Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDAFCRAMK 230 >gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] Length = 483 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 144/377 (38%), Gaps = 37/377 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P G++ DSR +AP F A+ G DG DFI A+ GA + V TD G Sbjct: 10 APDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGA--IAVLTD--ERDGEW 65 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IP V + A K A A + ++A+TG+ GK++T + L + + A +G Sbjct: 66 EIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHVSASVG 125 Query: 142 SYN---------------NHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRP 184 + + + V TLA + + G+ M S G ++ H V+ Sbjct: 126 TLGAVGPSGAVELGHTTPDPVAVQSTLAIL---ANEGVTHCAMEASSHGLAQYRMHGVQL 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALG 243 ++ HL E+ +AK ++F E L + +N D + A + A Sbjct: 183 AAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIATAAN 242 Query: 244 IKTIYSFGKSKN----ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +K ++ G + + R Q + W E K V IG A N L Sbjct: 243 LKP-FTVGWRGDHLWIDEISPRNTGQKLQLQW-ETPEGDKETIVNLPLIGEFQALNALAA 300 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 GI L AD A+ +GR + N G +D + P + ++ Sbjct: 301 AGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQN-GAGIFVD--FAHTPDGLD---TL 354 Query: 360 LSQISPHGEGRRIAVLG 376 L PH GR I V G Sbjct: 355 LRAARPHAAGRVICVFG 371 >gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD1] gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans CGD1] Length = 465 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY + G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ +L ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-ILAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G +A DAL R++ + ET+D L + DGDVV+ + Sbjct: 388 LTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N] gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N] Length = 468 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 53/373 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L + G F + Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTF-VIGGRLNSAGANAQLGQ-------GEFIVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L P +A+IT I H+ + + + SA E + L G+ L Sbjct: 160 EADESDASFLNLL--PVMAIITNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCA 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SM 281 DD+ E++ S + I ++G S +A + + + V+ QG+ ++ Sbjct: 218 DDANVREIMPFVS-----RPITTYGLSSDAQVRAENVQADGTRMRFSVRRQGREQDLPTL 272 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC-------- 332 EV + G H +N L + + S L D AI +AL+ F +G G+R+ Sbjct: 273 EVELNLPGLHNVRNALAAIAVASELGV-ADAAICQALAGF---KGVGRRFTQWGEFPVAE 328 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A G +++ID+ Y +P M A ++ P RRI + F D Sbjct: 329 AQGGGRYSVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-DF 383 Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441 VL + ++ V+ +G L D AL R++ V + E + L ++ + Sbjct: 384 VRVLGTADAVLLTEVYAAGEAPLVAADGRALARALRVAGKVEPLFVEDVAALPQAVRDFM 443 Query: 442 VDGDVVVVKSSNS 454 DGDV+++ + S Sbjct: 444 RDGDVLILMGAGS 456 >gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU121] Length = 449 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ ++ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKNSRLTGRLSGNIGYVASKVAQEVSSKEY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRHLIESENLKAKT 238 >gi|328947389|ref|YP_004364726.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema succinifaciens DSM 2489] gi|328447713|gb|AEB13429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema succinifaciens DSM 2489] Length = 531 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IIA+TGS GK++T L+ L+ + + C N + PL+ + Sbjct: 125 TKAPIIAVTGSKGKSSTVSALSYGLN--QAGFKCFLGGNITVS-PLSFLEKTDGTTPVVL 181 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L ++R L++P I++IT I P H + + ++ K IF +K L Sbjct: 182 ELSSWQLADLRG-RKLLKPKISIITKIVPDHQNWYGDMDSYVEDKKLIFADQDKNDFTIL 240 Query: 226 NYDD 229 ++D+ Sbjct: 241 DFDE 244 >gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum A2 str. Kyoto] gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum A2 str. Kyoto] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEDYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|225023733|ref|ZP_03712925.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC 23834] gi|224943615|gb|EEG24824.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC 23834] Length = 486 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 27/265 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + L++ + T+ IG LT A + G + + Sbjct: 128 IAIAGTHGKTTTTSLTASILTAAGLDPTFV--------IGGKLTAAGTNAKLGGGQYIVA 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I V+T I H+ + ++++ A E + G FL Sbjct: 180 EADESDASFL--YLTPVITVVTNIDTDHMDTYDHSVDKLHQAFVEFVHRMPFYGKAFLCI 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVV 284 D + + K ++G + AD Q V L +S+ EV Sbjct: 238 DSEHVRAILPEIQ----KPFATYGLDETADIYADNVHSEGAQMCFTVHLNKRSIAPFEVR 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFT 340 + G H N L +G+ ADV+ + L+ F G G+R++ L QG Sbjct: 294 LNAPGRHNVLNALAAIGVALECGADVEAIQRGLAGFG---GVGRRFQSYGEIKLPQGGSA 350 Query: 341 LIDESYNANPASMKAAISVLSQISP 365 L+ + Y +P M A +S P Sbjct: 351 LVIDDYGHHPVEMAATLSAARGAYP 375 >gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 293 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 35/292 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT------GT 222 L + R + +AV ++ HL ++E A+AK+ +F L + Sbjct: 178 SHALVQGRV--YGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 LN DD+ ++ + A + +FG + ADF+ + S S ++ Sbjct: 236 AVLNADDAESVRMQTATAA----HVITFGIKQQADFKASNIQITSHGSTFDL 283 >gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17] gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17] Length = 486 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 57/392 (14%) Query: 96 NKLAVAARLRSKATI------IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHI 147 N++ + R A I IA+ G+ GKTTT ++ A + + T+ IG N Sbjct: 101 NRIPIVPRAEMLAEIMRYRHGIAVAGTHGKTTTTSLIASVFAEAGLDPTF-VIGGKLNSA 159 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEI 206 G L + + + + FL HL P I+V+T I H+ + G +E++ Sbjct: 160 GTNAKLG-------GSRYLIAEADESDASFL-HLT-PLISVVTNIEADHMDTYGGDVEKL 210 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK 264 + L G + DD + E+L S +TI ++G + AD++ Sbjct: 211 KQTFVDFLHNLPFYGVAVMCIDDPYVREILPRIS-----RTIITYGIDNPEADYRAENIV 265 Query: 265 QCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILTAD-VDTAI--KALSV 319 ++ V+ G ++V G H N+L L ++++ T D VD A + L+ Sbjct: 266 SDGLRTRFLVKRPGPRADLQVELKMPGRH---NVLNALAVIAVATDDGVDDASIGRGLAG 322 Query: 320 FHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 F G G+R++ + +G TL+D+ Y +P + A I P GRR+ +L Sbjct: 323 F---AGVGRRFQVYGDYPIAKGSITLVDD-YGHHPTEVAAVIRAARDAWP---GRRVVML 375 Query: 376 GDMCEMGELSQSFHIDLAEVLS---------LYNISHVWLSGFHVLALKDALPRSIHVH- 425 ++ + D +VLS +Y+ + G AL +L + V Sbjct: 376 YQPHRFSR-TRDLYEDFVKVLSTVDGLLLMDVYSAGEAAIPGCDGRALCRSLRQRGKVEP 434 Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + E + + S L DGD+++ + + G Sbjct: 435 VFVEHNKDIETLLASVLRDGDLLITQGAGDIG 466 >gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] Length = 607 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 27/263 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS+DSR + PQ+ + A+ G G F A++ GA ++ + +G +PV Sbjct: 89 VTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPVPVL 148 Query: 87 GVDDV---LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGS 142 +++ +G L L + A+TG+ GKTT+ ML ++ + + IG+ Sbjct: 149 VTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGT 208 Query: 143 YN---NHIGVP--LTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH--------IAV 188 + + VP +T P V I + +H + H +A Sbjct: 209 IQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAG 268 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247 T + HL +E +KA++F E+ + DD + E + A +G + + Sbjct: 269 FTNLTQDHLDLHGTMEHYFDSKAQLFT-PERAELAVITADDEWGEKMFSAACEQMGAQQV 327 Query: 248 YSFGKSKN-------ADFQLRKW 263 + ++ A+F R W Sbjct: 328 HRLVTARGAGLAEVPAEFGARDW 350 >gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 465 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 32/49 (65%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 GI+ DSR + FFAI+G +DGH+F+ A+++GA VVV D+ A Sbjct: 14 QGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEA 62 >gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus oceani ATCC 19707] gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus oceani ATCC 19707] Length = 453 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 107 KATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 KA +I ITGS GK+T +L +A + ++ A ++G P L L PV D I Sbjct: 112 KAPVIGITGSNGKSTVTSLLEAMARQAGRQVLA-----GGNLGTPALELLEKPVP-DLYI 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T+ + A + I+P H+ + ++ AKA I+ G TGT+ Sbjct: 166 LELSSFQLET----TYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYRG---TGTMV 218 Query: 225 LNYDD 229 +N DD Sbjct: 219 INADD 223 >gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] Length = 495 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 102/394 (25%), Positives = 157/394 (39%), Gaps = 53/394 (13%) Query: 18 SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 ++G+ P G V G+++DSR + P F A+ G G F+ A+ GA ++ + Sbjct: 10 ALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAILTD 69 Query: 72 TDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTT-- 121 A GS + + D LA AA L R AT++A+TG+ GKT+ Sbjct: 70 AAGAALAREALQGSTAALIVAED----PRQALAGAAALWFGRQPATMVAVTGTNGKTSVA 125 Query: 122 --TKEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM- 169 T+++ + I + ++ +A ++ P+TL R+ D + G+ M Sbjct: 126 TFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLADAAEAGVTHAAME 183 Query: 170 --SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIF 224 SH E R L HL A T HL E +AKA +F L GT Sbjct: 184 ASSHGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTV 240 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD + A + G K I + G AD +L + + + QG Sbjct: 241 VNLDDPRGPEIAALARDRGQKVIGT-GFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTR 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLI 342 IG A N+ + G+ D + + F +G RG+ A Q G + Sbjct: 300 LPLIGGFQAWNVAVAAGLA---IGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFV 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P ++ A+ L PH GR I V G Sbjct: 357 D--YAHTPDALATALKAL---RPHVMGRIIVVFG 385 >gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus suis JS14] Length = 447 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160 A L S I+ ITGS GKTTT M+ L++ KK G +IG P ++A+ Sbjct: 104 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 159 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAV+T + +H+ E+ +AK I + Sbjct: 160 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 215 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279 + +N++ + L ++ A T+ F + D L K + ++ Sbjct: 216 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 264 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 M+ G+ G H +N L T+ + +L D ++LS F Sbjct: 265 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 305 >gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8] gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/397 (23%), Positives = 157/397 (39%), Gaps = 58/397 (14%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-------SIGSLSIPV 85 D R A E + Y GH A A VVV + VA + IPV Sbjct: 36 DLRGSATTERLARLGATIYTGHT----AANAAASDVVVTSSAVAKDNPEVLEARARKIPV 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSY 143 ++L L +L IAI G GKTTT M+ L+ ++ T +G Sbjct: 92 IQRAEMLAELMRLKYG---------IAIAGMHGKTTTTSMVAAVLAGGALDPT-VVVGGR 141 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 + +G L R + + + + FL + P +AV+T + H+ ++ + Sbjct: 142 VDAMGSNARLGR-------SQYLVAEADESDRSFLK--LSPILAVVTNLDREHMDTYADL 192 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 ++ E + + G I D+ E+L+A + + IY++G+S +ADF+LR Sbjct: 193 ADVERVFVEFMDRVPFYGAITACVDN---EMLRAILPRV-TRRIYTYGESPDADFRLRVL 248 Query: 264 KQCSE-QSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + + EV +G + + H G H N + I L + L+ F Sbjct: 249 RPAPDCHATFEVNTRGLVLGPFNLHVPGRHNLLNATAAVAIGVQLGIPPEKIAAGLASFR 308 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRI 372 G +R++ Q T++D+ Y +P ++A + VL PH R Sbjct: 309 ---GVDRRFQTKGVQNGVTVVDD-YGHHPTEIRATLQAARECGYGRVLVLFQPH----RY 360 Query: 373 AVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSG 408 D+ E + + +F D +VL +Y S + G Sbjct: 361 TRTRDLLE--DFTTAFGDADSLQVLDIYAASEQPIPG 395 >gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] Length = 495 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + +DSR I + F AI+G DG FI A+ +GA V+ D + G + ++PV Sbjct: 30 LELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYREAVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+++A +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 MYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 487 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 31/271 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ IQ I + I DSR + + F I+G G +I A+Q+GA Sbjct: 3 LQELLKGIQVEKIIGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGA- 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTT 122 + +++ +A G+ +I V L AVA+R T ++ +TG+ GKT+ Sbjct: 62 VAILSEKEIAIEGTTTIKVENSRKALA-----AVASRFYKFPTNTLKLVGVTGTNGKTSI 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFE 166 M+ L IG+ +N IG P +L + VD + E Sbjct: 117 TYMVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH E+ + H + + + T + P HL ++ +AK ++F + T +N Sbjct: 177 VS-SHALELGRVDH-TKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLF--YKTTLCNIIN 232 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 DD +++ + I I +FG ++ AD Sbjct: 233 VDDIHGKMIAEELKEEQIPLI-TFGMNQQAD 262 >gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 473 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 23/215 (10%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V+G +N +A I ITG+ GKTT +T LS I + + +IG P Sbjct: 106 VIGEIN---IAWESLKNINWIGITGTNGKTT----VTHLLSHILRENNLFAPFAGNIGTP 158 Query: 151 L---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 L + ++D+ + EL +I TH ++P I + TT P HL ++ Sbjct: 159 LCEIAYSTKSKNIDWIVAELSSF---QIEIATHCIKPKIGIWTTFTPDHLDRHKTLDNYF 215 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K + L+++ NYDD + E K+ + + I T + S + D+ + Sbjct: 216 KIKNSL---LKQSEFRIYNYDDQYLKENFKSLLNGIWITTNPNVSDSDHCDYWINNENFI 272 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 E+ + L+ ++ G H QN+L+ + Sbjct: 273 VERREKLLSLKNFKLK------GNHNTQNLLLAVA 301 >gi|2463563|dbj|BAA22556.1| MURD [Staphylococcus aureus] Length = 269 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A IIA+TG+ GKTT +T + + K G + +IG V +A+ D+ Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL +E +AK +I++ + Sbjct: 163 LVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRQVIESEELKAKT 238 >gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira murdochii DSM 12563] gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira murdochii DSM 12563] Length = 471 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 ++ A L IA+TG+ GKTTT ++ +SS KK +G+ N L Sbjct: 115 EIEFAYNLLPNRNYIAVTGTDGKTTTVTLIYKIISSYKKA-RLVGNVGNTFSKELETIEP 173 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ + EL L + HIA I IA HL + IEE +AK I Sbjct: 174 DEDI---VLELSSFQLETVEKF----HAHIAAILNIAEDHLDRYKDIEEYFNAKKNISIN 226 Query: 217 LEKTGTIFLNYDDSF 231 K + LNYD+ + Sbjct: 227 QNKNDFLILNYDNIY 241 >gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 511 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 30/239 (12%) Query: 19 IGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 +GI+P +N IS +S+ + F + G + DG + + A++ GA ++ + Sbjct: 13 VGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAIIGSA 72 Query: 74 MVASIGSLSIP-VFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIA 129 IGS+ + ++D L + V+ R K +I +TG+ GKTT +L Sbjct: 73 AKQKIGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTITFLLEYL 132 Query: 130 LSSIKKTYACIGS-YNNHIGVPLTL---------------ARMPVDVDFGIFELGMSHLG 173 L + K A G+ +N G A + + +F I E+ + Sbjct: 133 LKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILEVSSHSIA 192 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFLNYDD 229 + R A+ T + HL S +E K ++F +K G LN+DD Sbjct: 193 QNRISG--CEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVLNHDD 249 >gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrospira platensis str. Paraca] Length = 498 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 160/384 (41%), Gaps = 54/384 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 + G++ +S + P + F + G DG DF A+ GA +V+ ++ S + Sbjct: 24 ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83 Query: 83 IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP V D+ A ++A A T ++ +TG+ GKTTT ++ L+++ K A Sbjct: 84 IPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKPTAL 143 Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183 +G+ Y G + + P V+ FG+ E+ L + R L + Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQ 203 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV T + HL +++ AKA +F G +N DD + + L A+ LG Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----------YHM 292 ++S+ S D W + +QG V+H +G Y++ Sbjct: 259 GDRVWSYSVS---DPSTDIW--ADSLVYQPTGIQG----VLHTPMGSASFSLPLVGQYNL 309 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + N+L LG L D+ + +L F GR +R + + Q ++D Y P S Sbjct: 310 S-NLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQNITVIVD--YAHTPDS 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 ++ ++L P GR I V G Sbjct: 367 LE---NLLKASRPFIPGRMICVFG 387 >gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] Length = 485 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 146/367 (39%), Gaps = 35/367 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I+ DSR + F AIKG DGHDFI A+ GA +V+ ++ L I V Sbjct: 24 ISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINNGAVVVIGEKEINLPEDVLYIKVK 83 Query: 87 GVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 L + L A RL +I +TG+ GKTTT ++ L + +G+ Sbjct: 84 NSRKALSEASSLFFGKPAERL----NVIGVTGTNGKTTTTYLIKAILDEAGYSTGVVGTI 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVI 189 I L A + E+ + E + ++T V H + V Sbjct: 140 GIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVTMEVSSHSLKLHRVDHVKFEVGVF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL E+ ++K ++F+ K +N DD E L ++ L I I + Sbjct: 200 TNLTQDHLDFHVSFEDYYASKKKLFDLSRKA---VINVDDESGERLCSE---LNIPVI-T 252 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + KNAD + S+ EV G+ ++ + G N L + L D Sbjct: 253 YAIEKNADVRAENVVIGSDGVSYEVCAGGERRKITYKVPGRFSVYNSLAAISACLSLGID 312 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++T KAL GR + Q F ++D Y P ++ +VL+ + G Sbjct: 313 LETMAKALEKVRGVPGRFE--PVDEGQDFTVIVD--YAHTPDGLE---NVLNTVKTFARG 365 Query: 370 RRIAVLG 376 R I V G Sbjct: 366 RIITVFG 372 >gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida DSM 17836] gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida DSM 17836] Length = 479 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Query: 96 NKLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 +++ +A RLR A + +TG+ GKTTT +MLT L++ G ++G+PL Sbjct: 107 SEIELAWRLRDPANAAPWLCVTGTNGKTTTVQMLTAMLTAAGHRAVAAG----NVGLPLL 162 Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 A M P D EL L TH + H A + +AP H+ +E A+ K Sbjct: 163 EAVMDPEPYDVIAVELSSYQL----HFTHSMSAHSAAVLNLAPDHVDWHGSLEAYAADKG 218 Query: 212 EIFEGLE 218 IFE + Sbjct: 219 RIFENCQ 225 >gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus suis 98HAH33] gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis SC84] gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis P1/7] gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis BM407] gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis 98HAH33] gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis SC84] gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis BM407] gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis P1/7] gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis GZ1] Length = 449 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160 A L S I+ ITGS GKTTT M+ L++ KK G +IG P ++A+ Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAV+T + +H+ E+ +AK I + Sbjct: 162 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279 + +N++ + L ++ A T+ F + D L K + ++ Sbjct: 218 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 266 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 M+ G+ G H +N L T+ + +L D ++LS F Sbjct: 267 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 307 >gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 33/233 (14%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 + + GIS++S + + F AI+G DG D+I A+ KG ++ G + Sbjct: 17 ECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAKGVAAILAEAKGQTKHGEIHK 76 Query: 82 --SIPVFGVDDVLGALNKL--AVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSI 133 +P+ LNK+ A+A + + +I ITG+ GKTT +L LS + Sbjct: 77 LHDVPII----YFNQLNKMLSAIAGHFYQQPSRFLRLIGITGTNGKTTISYLLANWLSLL 132 Query: 134 KKTYACIGSYNNHIGVPLTLA--------------RMPVD--VDFGIFELGMSHLGEIRF 177 +T A +G+ N I L + R D V F I E+ L + R Sbjct: 133 GETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVKFSIIEVSSHGLVQDRV 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + AV + ++ HL + + AK ++F L + I +N DD+ Sbjct: 193 SN--LNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSELNVSKRI-INVDDT 242 >gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] Length = 495 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++ + +DSR I + F AI+G DG FI A+ +GA +V+ D G + Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV + ++ L++LA + +I +TG+ GKTT +++ L + A +G+ Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKSAVMGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium loti MAFF303099] gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mesorhizobium loti MAFF303099] Length = 484 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 153/369 (41%), Gaps = 33/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GIS DSR + P FFA+ G DG + A ++GA VV S+ L +PV Sbjct: 22 VTGISSDSRQVKPGVVFFALAGTKADGAAYAADAARRGALAVVAGKSN--SVAGLPVPVL 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSIKKTYAC 139 VDD AL A + T++A+TG+ GKT+ E A +SI T Sbjct: 80 TVDDPRLALALSAARYFGKQPRTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVV 139 Query: 140 IGSYNNHIGV----PLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHIAVITT 191 N + + P+ L ++ ++ D G+ M SH + R L V+ T Sbjct: 140 APGRNEYGSLTTPDPVALHQLLRELADAGVTYASMEASSHGLDQRRLDG-VKLAAGGFTN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIY 248 + H+ +E+ AK +F+ L G IF + S + A++ L + T+ Sbjct: 199 LGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAAQAAGLNVLTV- 257 Query: 249 SFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ DF L++ + + EV+ +G E+ G N L++ G+ Sbjct: 258 ----GRHGDFLTLKRVEHERHRQRAEVEAEGVLYEIDLPLAGDFQISNALVSAGLAISTG 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V A+ AL GR ++ G +D Y P +++ +VL+ + P Sbjct: 314 TPVAKALAALEKLKGAPGRLDLVGTTVS-GAPVYVD--YAHKPDALE---NVLASVRPFT 367 Query: 368 EGRRIAVLG 376 GR + V G Sbjct: 368 TGRVMVVFG 376 >gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum L-1] gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum L-1] Length = 473 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 84/369 (22%), Positives = 150/369 (40%), Gaps = 48/369 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158 +R K+T+ A+ G+ GKTTT M+ L + + T I SY ++ AR+ Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLG- 155 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + ++ + E S +R L AV+T I P HL ++ +++ A E E + Sbjct: 156 NSEWMVVEADESDGSFLRLDGTL-----AVVTNIDPEHLDHYGSFDKVKDAFVEFVENVP 210 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G L D + + + + I ++G S AD + + + +VQ++ Sbjct: 211 FYGAAMLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRE 267 Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331 + + GI G H N + +G+ + D T + F + R K Sbjct: 268 RDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFTKVGE 327 Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382 A+ G T+ID+ Y +P +KA ++ V++ + PH R L D+ M Sbjct: 328 IAVGGGTATVIDD-YGHHPVEIKAVLAAAREGAKGRVIAVVQPH----RFTRLRDL--MD 380 Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQS 439 E Q+F+ D+ +Y + G L L R H + + E D L I + Sbjct: 381 EFQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARVIAA 440 Query: 440 SLVDGDVVV 448 + D+++ Sbjct: 441 DVQADDMII 449 >gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM 555] gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016] gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555] gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 457 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 66/402 (16%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129 N + + L+IP+ + LG + ++ IA++G+ GKTTT ML+ I Sbjct: 81 NNEELLKAKDLNIPLMDRAEFLGEI--------MKGHKYNIAVSGTHGKTTTTSMLSSIT 132 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L + +G + IG + + P F I E ++F P I +I Sbjct: 133 LEANLDPTILVGGNLDIIGGNVRIGNSP----FFITEACEYKESFLKFF-----PFIGII 183 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 I HL + IEEI +A + + + K G + DD E + + + + S Sbjct: 184 LNIDADHLDYYKDIEEIQNAFIKFGKLIPKEGYLVCCADDRRMEKIISNVNC----NVMS 239 Query: 250 FGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILT 307 +G + D + E +++ EV K + ++ + G H N L ++ + IL Sbjct: 240 YG-IETGDITAKNICFDKEGRAFFEVYKSDKKLFSLNLSVPGEHNILNALASISVSLILN 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358 VD I L F +G +R+ + +ID+ Y +P +KA ++ Sbjct: 299 ISVDNIINGLKSF---KGTHRRFEIKGQRKGVVVIDD-YAHHPTEIKATLNAAKNYPHKR 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA- 417 ++ PH R I++ E + +F N+ + LS KD Sbjct: 355 IICVFQPHTFSRTISLF------KEFTAAFD----------NVDELILSDIFPAREKDTG 398 Query: 418 -----------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + R + + D + ++ + L +GDV++ Sbjct: 399 EISSSMLCEQIIKRGVKCRNIKDFDSIVQYLNNILTEGDVLL 440 >gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] Length = 486 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 143/378 (37%), Gaps = 54/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR AP F A+ G DG ++ K A + +PV Sbjct: 27 IGGITADSRKAAPGSLFVAVAGTKADGAAYV-----KDAVAKGAVAVVSGHAVDADVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L+ A + T++A+TG+ GKT+ S +++ +A G Sbjct: 82 AVTDPRLYLSLAASRFYGKQPETMVAVTGTAGKTSVA-------SFVRQIWAFAGHAAAQ 134 Query: 147 IGVPLTLARMPVDVDFGIFEL----------------GMSHLG--------EIRFLTHLV 182 IG +A P D+G G++H + R L V Sbjct: 135 IGTTGVIA--PGREDYGALTTPDPVTLHALLAELAAEGVTHAAMEASSHGLDQRRLDG-V 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFE--LLKAKS 239 + A T + H+ IE+ +AK +F+ L EK + DD + + + A Sbjct: 192 KLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIRAAAD 251 Query: 240 HALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 L ++T+ + D+ L++ + + +EV G EV G N L+ Sbjct: 252 AGLNVRTV-----GRKGDYLTLKRVEHFRHKQLIEVHHDGVIHEVDIPLAGDFQVANALV 306 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+ TA+KAL GR + N G +D Y P +++ + Sbjct: 307 AAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKN-GALAYVD--YAHKPDALE---N 360 Query: 359 VLSQISPHGEGRRIAVLG 376 VL+ + P GR I V G Sbjct: 361 VLTSVRPFTSGRIITVFG 378 >gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 453 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 21/191 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 ++A P DF L V G V + T + IPV G ++ +A Sbjct: 56 YYAGGYPEVKRQDFDLLVVSPG---VPLETAPIRQAREQGIPVIG---------EVELAY 103 Query: 103 RLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 L+ KA +AI+G+ GKTTT +L L+ + G +IG+PLT + Sbjct: 104 ILKPKAVEFLAISGTNGKTTTTSLLHYILAQAGRNALAGG----NIGIPLTTLLDSISAG 159 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L + RP+I + I P HL+ +E AKA+IF + Sbjct: 160 TIVVELSSFQL----ESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGD 215 Query: 222 TIFLNYDDSFF 232 NY+DS Sbjct: 216 YAVFNYEDSIL 226 >gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str. Paris] gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila str. Corby] gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila 2300/99 Alcoy] gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str. Paris] gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila str. Corby] gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila 2300/99 Alcoy] gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila 130b] Length = 469 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 46/353 (13%) Query: 63 KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA +VV N + + L IPV + + A+ A L IAI G+ Sbjct: 73 KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123 Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT +++ +A + ++ IG N G L + + + E S + Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232 FL ++P +AV+T I H+ + G E++ + E L G + D+ Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290 +L A + ++G + A ++ W Q S V K + + G Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347 H N L ++ I + L D D+ ++ L F +G G+R++ + F +I + Y Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +P + + I ++ P E R + V +QS H +VLSL + Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDVLSLSD 394 >gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dyadobacter fermentans DSM 18053] gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans DSM 18053] Length = 491 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 83/351 (23%), Positives = 133/351 (37%), Gaps = 44/351 (12%) Query: 10 LLQAIQGHSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L ++ G G + G+ V I +DSR + P F A++G DGH FI A GA Sbjct: 6 ILSSLLGEVKGAIIHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123 V + + + I V+D A+ +A A K ++ +TG+ GKT+ Sbjct: 66 --VAILCEELPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVA 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLT------------LARMPVDVDFGIFELG 168 L ++ + + N I +P T LA+M +F Sbjct: 124 TFLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEV 183 Query: 169 MSHLGEIRFLTHLVRPHIA--VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH +T L H A + T I HL + AK F+ L K+ +N Sbjct: 184 SSHSVAQHRITGL---HFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDALPKSAFALVN 240 Query: 227 YDDS----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 DD + KA+ ++T+ +F K K S+ + + + S E Sbjct: 241 IDDRRGTVMVQNTKARVETYSLQTLATF-----------KGKIISD-TLAGMHMDINSQE 288 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 V IG A N+L G +L + + LS GR +++ A Sbjct: 289 VWFRVIGRFNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSA 339 >gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] Length = 491 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 115/458 (25%), Positives = 192/458 (41%), Gaps = 69/458 (15%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR ++ +AF IKG +DGH+FI V KGA VVV D+ + VDD Sbjct: 29 DSRKVSDGDAFVCIKGAGFDGHEFIRDVVSKGAVAVVVMEDVEVDEDVTVVK---VDDTR 85 Query: 93 GALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL ++ K + ITG+ GKTTT M+ L S+ IG+ IG Sbjct: 86 LALACMSADYFGNPAEKLITVGITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDE 145 Query: 151 LTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRP---HIAVITTIA 193 +T A+ + + E + +S G + H V + T I Sbjct: 146 VTPAKNTTPESYVVQETFAKMVEQGCKCVVMEVSSQG---LMLHRVSGFTFDYGIFTNIE 202 Query: 194 PAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 P H+ + ++ K+ + L++ +N D F + + + H I+T +G Sbjct: 203 PDHIGPNEHKDFDDYLHCKSML---LKQCKHGIVNMDADFIDRV-LEGHTCDIET---YG 255 Query: 252 KSKNADFQLRKWKQCSEQSWMEV--QLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + + DF+ + K ++ + V L+GK V H G N L + I S T Sbjct: 256 VNGDYDFKAQDIKLFTKPGCLCVSYDLKGKMDFPVEIHVPGMFSVYNSLCAIAICSHFTE 315 Query: 309 DVD---TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 DV+ TA++ + V +G+ +++ F +ID ++NA S+++ ++ L Q +P Sbjct: 316 DVEKIQTALENVKV------KGRVEIIPISKRFTLMIDYAHNA--MSLESLLTSLKQYNP 367 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 R + V G C G S+ ++ EV S LS F ++ + PR Sbjct: 368 K---RLVTVFG--CG-GNRSKERRFEMGEVSS-------RLSDFTIVTSDN--PR----- 407 Query: 426 YSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + E MD + + + DG+ V V Y ++N Sbjct: 408 FEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILN 445 >gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] Length = 491 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S+DSR I F A++G DG FI A+ +GA +V+ T A G + + Sbjct: 20 VQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIKMHAQ 79 Query: 87 GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + ++ L L +A + ++ +I ITG+ GKTT +L AL + A + Sbjct: 80 VAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVKNAQM 139 Query: 141 GSYNN 145 G+ N Sbjct: 140 GTIGN 144 >gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 469 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 46/353 (13%) Query: 63 KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA +VV N + + L IPV + + A+ A L IAI G+ Sbjct: 73 KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123 Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT +++ +A + ++ IG N G L + + + E S + Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232 FL ++P +AV+T I H+ + G E++ + E L G + D+ Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290 +L A + ++G + A ++ W Q S V K + + G Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347 H N L ++ I + L D D+ ++ L F +G G+R++ + F +I + Y Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +P + + I ++ P E R + V +QS H +VLSL + Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDVLSLSD 394 >gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 465 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 122/302 (40%), Gaps = 42/302 (13%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG 141 IPV D+LG L T + G+ GKT+T M +AL + + + IG Sbjct: 94 IPVIRRSDLLG---------ELMEGYTQMLFAGTHGKTSTTSMAVVALQAAGEDPSFAIG 144 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 N G T A F + E S +R+ RP IAVIT I P HL F Sbjct: 145 GQLNRAG---TNAHHGSGAVF-VAEADESDGSLLRY-----RPDIAVITNIEPDHLDYFG 195 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--- 258 E + + + TGT+ + DD ++ G+ T+ +G + Sbjct: 196 DAETYYKVFDDFADRITDTGTLIVCLDDESAAECGVRALERGV-TVVGYGTMTHPSIPNA 254 Query: 259 -QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVD--TAI 314 + W+ ++ S ++V L G M H I G HM N + L V+ +TA D Sbjct: 255 AHVVDWRTENDLSVVKVNLNGTEM-TYHLSIPGKHMVLNSVAAL--VAGVTAGADPFALA 311 Query: 315 KALSVFHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + LS F G +R+ R L+ G T + + Y +P + A + + G G R+ Sbjct: 312 EGLSGF---TGVRRRFELRGELSDG--TRVYDDYAHHPTEVDAVLK-----AAKGTGARV 361 Query: 373 AV 374 V Sbjct: 362 VV 363 >gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus suis 05ZYH33] gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis 05ZYH33] Length = 449 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160 A L S I+ ITGS GKTTT M+ L++ KK G +IG P ++A+ Sbjct: 106 AYLVSDVPIVGITGSNGKTTTTTMIAEVLNAGKKPAKLCG----NIGYPASSVAQTATAE 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAV+T + +H+ E+ +AK I + Sbjct: 162 DTLVMELSSFQL----MGTESFHPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQRQMTAE 217 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKWKQCSEQSWMEVQLQGK 279 + +N++ + L ++ A T+ F + D L K + ++ Sbjct: 218 DFVVINFNQKEAKELAGQTKA----TVVPFSTQEVVDGAYLADGKLYFKGEYI------- 266 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 M+ G+ G H +N L T+ + +L D ++LS F Sbjct: 267 -MDADQIGVPGSHNVENALATIVVAKLLGVDQQAIQESLSAF 307 >gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] Length = 495 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 ++ + +DSR I + F AI+G DG FI A+ +GA +V+ D G + Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV + ++ L++LA + +I +TG+ GKTT +++ L + A +G+ Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] Length = 483 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 89/403 (22%), Positives = 154/403 (38%), Gaps = 68/403 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA---------VQKGAGLV--VVNTDMV 75 + G++ DSR + P F I+G DGHD+ + A ++ GL +V D Sbjct: 21 ITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAGAAAILCERAIGLENEIVCHDTH 80 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 + G + +G A RLR ++ +TG+ GKTT M+ L S Sbjct: 81 YAYGIVCGNWYG-----------NPARRLR----LVGVTGTNGKTTVSYMVKHILESAGH 125 Query: 136 TYACIGSYNNHIG-----------VPLT----LARMP-VDVDFGIFE-----LGMSHLGE 174 IG+ +N IG PL LARM ++ + E L L Sbjct: 126 QTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVMECSSHALDQQRLAG 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 +RF + T + HL +E AK ++F + +N DD++ E Sbjct: 186 LRFAS-------VGFTNLTQDHLDYHGDMESYYHAKKKLFSMCDAAA---VNMDDAYGER 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L A+ + T +S S ADF + + + S + +G V G Sbjct: 236 LAAEVRHICPVTTFST-VSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLPIPGDFSVA 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + + L ++ A + L+ GR + L G ++ Y +P ++ Sbjct: 295 NAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIE----VLPTGTDYVVIRDYAHSPDGLE 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 I+ + + + GR + + G C G ++ +AE+++ Sbjct: 351 KIITTMKKFA---RGRVVTLFG--C-AGNRDRTKRKKMAEIVA 387 >gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica T6c] gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 484 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 60/406 (14%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT--IALSS 132 V + + IPV ++L L R R IAI G+ GKTTT ++ A + Sbjct: 93 VNAANEMRIPVIRRAEMLAEL------MRFRHG---IAIAGTHGKTTTTSLIATIFAQAE 143 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + T+ IG N G T AR+ + I E S HL +P ++V+T I Sbjct: 144 LDPTF-VIGGLLNSAG---TNARLGSS-QYLIAEADESDAS----FVHL-QPMVSVVTNI 193 Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-SF 250 P H+ + G +++ + L G L DD L + IK Y ++ Sbjct: 194 EPDHMETYQGDFQKMQDTYIDFLHNLPFYGLAVLCIDDPVITQLLPR-----IKRKYLTY 248 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G S+ AD + K QS ++ + + ++VV + G H N+L L +++ T + Sbjct: 249 GYSEVADVRATHVKHTFNQSEFTLKRKDHQDIQVVVNAPGKH---NVLNALAAIAVATDE 305 Query: 310 --VDTAIK-ALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D AI AL+ F G G+R+ A +G L+D+ Y +P ++A I+V Sbjct: 306 NIEDAAITAALANF---SGIGRRFEMLGEFATGEGDVLLVDD-YGHHPTEVEATIAVARN 361 Query: 363 ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 PH R + D + LSQ +D+ +L +Y+ + G Sbjct: 362 NWPDRRLVMAYQPHRYSRTRDLYEDFVRV--LSQ---VDVLLLLDVYSAGEEKIEGADSK 416 Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 +L ++ + + Y + L + +L D D+++ + + + G Sbjct: 417 SLCRSMRQRGQLEPIYVADKNELPKLLADNLKDQDILLTQGAGNIG 462 >gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp. Ellin185] gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp. Ellin185] Length = 944 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 16/145 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---------- 155 S+ I+A+TG+ GKTTT ML + + K + I L + R Sbjct: 498 SRVPIVAVTGTNGKTTTSRMLAHIMKGLGKKVGMTSTDGIVIDERLLITRDASGPKSAKM 557 Query: 156 --MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211 VDF + E+ G +R R IAV+T I HL + +E++A+ K Sbjct: 558 VLQNPRVDFAVLEVARG--GILREGLGYDRNDIAVVTNIQSDHLGMRGINSLEDLANVKQ 615 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLK 236 I E + + G LN DD + ++ Sbjct: 616 VIVEAVPRDGFAVLNADDEYVRRMR 640 >gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR +AP + FFA G DG +I AV++GA VV + +P V Sbjct: 24 LTSDSRRVAPGDVFFAYVG-DADGRSYIADAVERGAAAVVYEAAGFTWPAQIDVPHLAVT 82 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGS 142 D+ ++A + + +A+TG+ GKT+ L IALS + T IG+ Sbjct: 83 DLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIGT 139 >gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 478 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 32/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR++ P F A+ G DG FI A+ GA V+V + P Sbjct: 12 ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVEV----PPQV 67 Query: 87 GVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 + + A+ A A + A+TG+ GKT+T E ++ + A IG+ Sbjct: 68 ALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGTL 127 Query: 143 ------YNNHIGVPLTLARMPVDVDFG-IFELGMSHL-------GEIRFLTHLVRPHIAV 188 ++N G+ T + D + E+G++H G + V+ A Sbjct: 128 GIIAPGWDNSGGL-TTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAA 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL + ++ A AK +F E L + T +N D GI T+ Sbjct: 187 FTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-TV 245 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +G++ Q +++++ G+++ + G A N L LG+ Sbjct: 246 LGYGRAARDLRLAAARPTADGQE-LDLEIMGRAVTIRLPLAGRFQADNALAALGLALACG 304 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 AD TA++AL GR ++ A G +D Y P +++ +VL + PH Sbjct: 305 ADPVTALEALGSLEGVHGRLQKV-AARAHGAPVYVD--YAHTPDALE---TVLKALRPHA 358 Query: 368 EGRRIAVLG 376 R + V G Sbjct: 359 SRRLVVVFG 367 >gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya dadantii Ech703] gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703] Length = 494 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 25/229 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 P+ + +++DSR A + F A+ G DG +I A+ +G +V D + G+ Sbjct: 18 PERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAIVAQADAASPNGTCC 77 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIK 134 +PV +DD+ L+ A+A R + +I +TG+ GKTTT ++L ++ Sbjct: 78 ELHGVPVVYLDDLNQRLS--ALAGRFYQHPSDTLQLIGVTGTNGKTTTAQLLAQWTQALG 135 Query: 135 KTYACIGSYNN----HIGVPLTLARMPVDVD--FGIFELGMSHLGEIRFLTHLVRPH--- 185 KT A +G+ N H+ VDV F + + + +H + H Sbjct: 136 KTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVAAMEVSSHGLVQHRVE 195 Query: 186 -----IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A T ++ HL + +AK +F + G +N DD Sbjct: 196 DVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFS-EHRVGQAVINADD 243 >gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 488 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 23/223 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ S+++ AF IKG DGH++I A+++GA L++V+ S + Sbjct: 24 IKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYDTSKLKDKVLFI 83 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + AL+ ++A + +I +TG+ GKT+T M+ L IG+ Sbjct: 84 KTSNTRKALS--VISANFFEHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHKVGLIGT 141 Query: 143 YNNHIGVPLTLAR--MPVDVDFG--IFELGMSHLGEI--RFLTHLVRPH--------IAV 188 N IG A+ P D FE+ ++ + +H + H + V Sbjct: 142 VKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHRVDCCDFDVGV 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 T + HL +E +AK ++FE +K +N DD + Sbjct: 202 FTNLTQDHLDFHGTMENYFAAKLKLFEMSKKR---VVNVDDEW 241 >gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S] gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S] Length = 473 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 84/369 (22%), Positives = 150/369 (40%), Gaps = 48/369 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158 +R K+T+ A+ G+ GKTTT M+ L + + T I SY ++ AR+ Sbjct: 105 MRLKSTV-AVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLG- 155 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + ++ + E S +R L AV+T I P HL ++ +++ A E E + Sbjct: 156 NSEWMVVEADESDGSFLRLDGTL-----AVVTNIDPEHLDHYGSFDKVKDAFVEFVENVP 210 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G L D + + + + I ++G S AD + + + +VQ++ Sbjct: 211 FYGAAMLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVQPIPGGNRFDVQIRE 267 Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331 + + GI G H N + +G+ + D T + F + R K Sbjct: 268 RDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFTKVGE 327 Query: 332 CALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMG 382 A+ G T+ID+ Y +P +KA ++ V++ + PH R L D+ M Sbjct: 328 IAVGGGSATVIDD-YGHHPVEIKAVLAAAREGAKGRVIAVVQPH----RFTRLRDL--MD 380 Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQS 439 E Q+F+ D+ +Y + G L L R H + + E D L I + Sbjct: 381 EFQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKRRGHRNAATVEGADDLARLIAA 440 Query: 440 SLVDGDVVV 448 + D+++ Sbjct: 441 DVQADDMII 449 >gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 491 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 97/425 (22%), Positives = 160/425 (37%), Gaps = 45/425 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + P V+ I+ DSR + F I G DGH F A + GA Sbjct: 3 LNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 VV + ++IPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AVVAEKPV-----DVTIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFELG 168 ++ + + IG+ IG P +L V + E+ Sbjct: 118 LVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGT 222 L + R + +AV ++ HL +EE A AK+ +F L Sbjct: 178 SHALVQGR--VYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN DD ++ + A + +FG +NADF+ + S S + + Sbjct: 236 AVLNADDEESVRMQTATAA----HVITFGIKENADFRATNIEITSHGSTFNLTTPAGKFK 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L + L ++ AI + +GR + Q F ++ Sbjct: 292 LKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAG--QDFPVIV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D Y+ P + ++VL I R V+G C G+ + +A++ Y + Sbjct: 350 D--YSHTPDGL---LNVLQTIDEFANKRVFVVVG--C-GGDRDKGKRPQMAKIAVQYATN 401 Query: 403 HVWLS 407 V+ S Sbjct: 402 PVFTS 406 >gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis HLHK9] gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9] Length = 469 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 150/375 (40%), Gaps = 41/375 (10%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ AL + + T+ IG LT A + G + + Sbjct: 108 IAIAGTHGKTTTTSLVASALGRAGLDPTFV--------IGGRLTAAGSNARLGSGDYLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AV+T I H+ + E + A + + L G L Sbjct: 160 EADESDASFLC--LSPVMAVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAVLCI 217 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285 DD E+L + + + ++G + +AD + + + Q +V Q + E H Sbjct: 218 DDKHVREILPFVT-----RPLTTYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRHP 272 Query: 286 ---HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341 + G H N L + I AD+ L+ F R +RY AL G Sbjct: 273 VTLNLPGRHNVLNALAAIAIGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQAT 332 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400 + + Y +P M A ++ P RR+ VL ++ D VLS + Sbjct: 333 VVDDYGHHPVEMAATLAAARGAFPE---RRL-VLAFQPHRYTRTRDLFEDFVGVLSTVDA 388 Query: 401 --ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 ++ V+ +G + D AL R++ V + E + L + L DGDVV+ Sbjct: 389 LLLAEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTM 448 Query: 451 SSNSCGFY--RLINL 463 + S G RL+ L Sbjct: 449 GAGSIGQTPGRLVTL 463 >gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf. novicida 3523] Length = 417 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 50/282 (17%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ I Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCIV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + + ++P HL + EE +K L K F Sbjct: 150 EVSSFQID----LFNCVRFDLGCVINVSPDHLDRYQNFEEYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK + + A ++ E L G+ Sbjct: 202 VYD----------VHNNGIKYAGEYQIIRGAIYR----GSIKLLDITETNLYGE------ 241 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLID 343 H +N+++ L I+ L D++ AI ++ F +G +RC + + T I+ Sbjct: 242 -----HNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGITYIN 291 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +S N + AA++ ++ I +LG + + G+ S Sbjct: 292 DSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328 >gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 473 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 29/254 (11%) Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 ++P +AV+T I P HL + E + +A + G L D + + A Sbjct: 174 LKPTVAVVTNIDPEHLDHHGSFEALETAFLNFVSSIPFYGFATLCIDHPAVQRMMAH--- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SME----VVHHGIGYHMAQ 294 + + I ++G S NAD + + +V L + ME V+ +G H Q Sbjct: 231 IKDRRIITYGMSANADVRATNLRVEGRNMLFDVLLSDRLVGEMERIDNVLFPMLGDHNVQ 290 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + D +L+ F G G+R+ T+ID+ Y +P +K Sbjct: 291 NCLAAIAVALEMNIDAKKIKDSLAAFG---GVGRRFETKGVSDGVTIIDD-YGHHPVEIK 346 Query: 355 AAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 AA+ +++ + PH R + D C G + + + +A+V Y Sbjct: 347 AALQAGRMMCGDNKLIAVVQPHRYSRLADLFTDFC--GCFNDADDVLVADV---YAAGET 401 Query: 405 WLSGFHVLALKDAL 418 + GF AL + L Sbjct: 402 PIEGFDKAALVEGL 415 >gi|167721346|ref|ZP_02404582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei DM98] Length = 152 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 7/74 (9%) Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMC 379 P +GR + R A T+ID++YNANP SM+AAI VL +Q +P R+ V+G+M Sbjct: 1 PVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAP-----RVLVIGEMG 55 Query: 380 EMGELSQSFHIDLA 393 E+G+ +FH ++ Sbjct: 56 EVGDEGPAFHREIG 69 >gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus pentosaceus ATCC 25745] gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus pentosaceus ATCC 25745] Length = 455 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + +I +TGS GKTT ++ + L KK G +IGVP T+A+ D + E Sbjct: 113 SELIGVTGSNGKTTVTTLIQLMLDDNKKHAYVAG----NIGVPATTVAQKATAEDKIVME 168 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L I L PHIAV+ I +HL E + K I + K + +N Sbjct: 169 LSSFMLAGIDRL----HPHIAVLNNIFASHLDWHKTRENYVNDKMNITKNQTKDDFLVIN 224 Query: 227 YDDSFFELLKAKSHA 241 +D++ ++ L ++ A Sbjct: 225 WDNTEWQELAKRTQA 239 >gi|319651887|ref|ZP_08006010.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2] gi|317396379|gb|EFV77094.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2] Length = 431 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 51/336 (15%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA+TG+ GKT+T +L + K T IG + + ++ +FE Sbjct: 102 TSIAVTGAHGKTSTTGLLAHVMRGAKPTSFLIGD---------GTGKGDKEAEYFVFE-- 150 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H F+ IE++ SA E+ + K IF Sbjct: 151 ---ACEYRRHFLSYY--PDYAIMTNIDFDHPDYFANIEDVFSAFQEMSWQVNK--GIFAC 203 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + ++AK + Y FG ++ DFQ R + +E + +V ++ E Sbjct: 204 GDDEQLQKIQAKVPVV----FYGFG--EDNDFQARNVVKTTEGTTFDVFVRNTFFETF-- 255 Query: 287 GIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLID 343 I + N+L +L ++++ ++D I + L F EG +R+ G +ID Sbjct: 256 SIPAYGDHNVLNSLAVIALCHYEEIDAKIVQEQLLSF---EGVKRRF-SEKKVGSQVIID 311 Query: 344 ESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P +KA + Q PH R A L D L+ + L Sbjct: 312 D-YAHHPTEIKATVEAARQKYPEKDVVAVFQPHTFTRTQAFLDDFASSLNLADKVY--LC 368 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 E+ +H L+ + LK +P + ++ ET Sbjct: 369 EIFGSARENHGKLT---IDDLKAKIPNAQILNEEET 401 >gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus uberis 0140J] gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus uberis 0140J] Length = 453 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160 A L S+A IIAITGS GKTTT M+ L+ K+ G +IG P + M Sbjct: 106 AYLISEAPIIAITGSNGKTTTTTMIADVLNHGGKSALLSG----NIGFPASEVAMTASQD 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D EL L I+ PHIA+IT + P HL + AK I + Sbjct: 162 DILTMELSSFQLMGIKDF----HPHIALITNLMPTHLDYHGSFDAYIQAKWNIQNNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN + + L K+ A Sbjct: 218 DVLILNAEQDQTKELAQKTQA 238 >gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium phaeobacteroides DSM 266] gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium phaeobacteroides DSM 266] Length = 464 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFG 163 KA II ITG+ GKTTT ++ + T+ +IG P + L P DV Sbjct: 104 KARIIGITGTDGKTTTATLVHRIFETDGMTHRYRAFSVGNIGQPFSSRVLTMRPEDV--A 161 Query: 164 IFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221 + EL L G F RP ++VIT I P HL + G + A K I+ K Sbjct: 162 VIELSSYQLEGCCTF-----RPDVSVITNITPDHLDRYEGELHNYAQTKYRIYAHQGKED 216 Query: 222 TIFLNYDDSFF 232 T+ N DD Sbjct: 217 TLVYNDDDPLL 227 >gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] Length = 459 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLAR 155 K T+I +TG+ GK+T ++L LS + IG+ IG PLTL R Sbjct: 85 KLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCCLIGTGRIVIGDEVRFSPNTTPDPLTLTR 144 Query: 156 MPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + + +D I E+ L R L +AV+T + HL ++ AK Sbjct: 145 LLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF--DLAVLTNLKQDHLDYHKTLKAYQRAK 202 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 +FE L++ GT LN DD + ++ H + ++++G+ Sbjct: 203 FMLFEKLKEKGTAILNQDDPVTQRWLSQLH----RPVFTYGRD 241 >gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] Length = 539 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++GI+ DSR + P F A+ G DG FI AV++GA ++ G P+ Sbjct: 75 ISGITADSRQVMPGWVFAALPGQKTDGRRFIADAVERGAAAILAPAGTAWPPGVPPRPMI 134 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + L +A TI AITG+ GKT+T + L + + ++ A +G+ Sbjct: 135 QDAEPRRLLALMAARLAGAQPHTIAAITGTNGKTSTADFLRQIWTLLGRSAASLGT 190 >gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24] gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24] Length = 467 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%) Query: 110 IIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ + G+ GK+TT M+T+ L + + T+A IG+ +GV D + E Sbjct: 118 VVTVAGTHGKSTTTSMVTVLLQGAGLDPTFA-IGANVPSLGVNAASGTS----DIFVAEA 172 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL + RPHIAV+T + P HL + E + + E L G + Sbjct: 173 DES---DGSFLNY--RPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACA 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 DD L ++ G + ++G +++A QLR W+ Sbjct: 228 DDPGARALAERTRTRGNTRVVTYGTAEDA--QLRLHDGGPGDVWV 270 >gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum Ba4 str. 657] gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum Ba4 str. 657] Length = 458 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGAYLSNNKLTMQGKEVCDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] Length = 520 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 147/388 (37%), Gaps = 63/388 (16%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+RS+A +AFFA D FI A+++GA V+V + G+L V + Sbjct: 34 DTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFG--GTLDASVA---HAV 88 Query: 93 GALNKLA---VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145 ALN+LA +A R + + ITG+ GKT+ + + ALS++ A +G+ Sbjct: 89 PALNELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGTLGTG 148 Query: 146 ------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAV 188 H G P + D G + M H G + IAV Sbjct: 149 LVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF----DIAV 204 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +AK +F E + +N DD+ L A +H Y Sbjct: 205 FTNLTQDHLDYHGTFAAYETAKTRLFAWPELRAAV-INRDDAAGRRLLASTHGHARTIAY 263 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNMLMTLG 301 + D + Q +W L ++ G +H+ A+ + TLG Sbjct: 264 GI-EGGQGDAHAKGAPQAD--AW----LTASNVRATATGTAFHLNTSDWGHAEVEVQTLG 316 Query: 302 IVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNA 348 + ++ L ADV D A+ L+ GR +R L N +ID Y Sbjct: 317 LFNVSNLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVID--YAH 374 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLG 376 P +++ + L I+ G + + G Sbjct: 375 TPDALEKTLEALRPIATARGGELVCMFG 402 >gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 448 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 12/163 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFG 163 ++A I+AITGS GK+T +T + + + + ++G P L + D Sbjct: 104 TRAPIVAITGSNGKST----VTTLVGEMARAAGLRAAVGGNLGTPALDLLPETGPEPDLY 159 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + EL L H P A I ++P HL A+AK IF + T+ Sbjct: 160 VLELSSFQLAAC----HDFHPRAAAILNLSPDHLDWHGDYAAYAAAKTRIFRAMGAGDTL 215 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 LN D+F L + A G++ + FG + D + + C Sbjct: 216 VLNAGDTFTAALPPQVPA-GVRVQF-FGGADEHDASIAGDRLC 256 >gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] Length = 494 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 149/381 (39%), Gaps = 40/381 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G+ P + GI++DSR + F A+ G G F A+ GA ++ + + Sbjct: 19 GVDP--MIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVA 76 Query: 80 SL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123 L ++ + V+D AL A T++A+TG+ GKT+ Sbjct: 77 ELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGH 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGIFELGMSHLGEIRFLT 179 + + + + ++ +++ N+ P+TL A+ SH E R L Sbjct: 137 QAVNLGTTGVEGSWSH--PLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGLEQRRLD 194 Query: 180 HLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLK 236 + H+A T HL E +AKA +F L G +N DD E ++ Sbjct: 195 GV---HLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMR 251 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + A G + + S G+ D L + + M K + + IG A+N+ Sbjct: 252 AVAAARG-QEVISVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENI 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355 L+ G+V D L H + RG+ A + G +D Y P ++ Sbjct: 310 LLACGLVIASGEDPQAVFDTLP--HLQTVRGRMQLAATRENGATVFVD--YAHTPDAVAT 365 Query: 356 AISVLSQISPHGEGRRIAVLG 376 AI L PH GR +A++G Sbjct: 366 AIKAL---RPHVLGRLVAIVG 383 >gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] Length = 511 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/380 (22%), Positives = 153/380 (40%), Gaps = 54/380 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82 V G++ DSR++ E FFA+ G + DG +I A+ GA VV ++D ++ ++ Sbjct: 48 VRGVASDSRAVLSGEVFFALAGANTDGARYIDQAIANGAVAVVGEQFPDSDHRVALVRVA 107 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK-------EMLTIALSSI-- 133 P + + R ATI A+TG+ GKT+ + L A +SI Sbjct: 108 NPRRALALAAARMFP-------RQPATIAAVTGTSGKTSVAAFTRQIWQRLGFAAASIGT 160 Query: 134 -------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLT 179 + Y + + + P+ L R ++D I G++HL G +F Sbjct: 161 IGLVTPQRSVYGSLTTPD-----PIALHR---EIDQ-IAGEGVTHLALEASSHGLDQFRL 211 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAK 238 VR A T ++ H+ + +AK +F L G ++ D E + A Sbjct: 212 DGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGAAVISADHEHSEAVIAA 271 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSE--QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + A G++ I + G++ N +R + + V+ +G+ + +G +N Sbjct: 272 ARARGLRLI-TVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRERGLRLPLVGEFQIENA 330 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ G+ D + AL H + +G+ G +D Y P ++ A Sbjct: 331 LVAAGLAIGTGGDAEQVFAALQ--HLEGAKGRLELVGDRNGAPIFVD--YAHKPDALAKA 386 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L P+ + + I V G Sbjct: 387 LQAL---RPYAKRKLIVVFG 403 >gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria polysaccharea ATCC 43768] gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria polysaccharea ATCC 43768] Length = 445 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNHRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + + A K +IF G G LN DD+F +K + + F ADF L + Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 263 ----WKQCSEQ--SWMEVQLQG 278 KQ E + ++ LQG Sbjct: 252 ETGTLKQGDEDLIATQDIPLQG 273 >gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum Bf] gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum Bf] Length = 458 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGAYLSNNKLTMQGKEVCDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans JJ] gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 45/300 (15%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARM 156 LA RLR+ IA+ G+ GKTTT +L TI + IG N G L + Sbjct: 111 LAELMRLRNG---IAVAGTHGKTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARLGQ- 166 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 G + + + + FL + P +V+T + HL +++ + I A + G Sbjct: 167 ------GEYLIAEADESDGSFLC--LSPIASVVTNVDADHLDHYADLAAIDDAFVDFLNG 218 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQ 275 + G + DD L + + + I ++G + A +LR K + S V Sbjct: 219 IPFYGVNVVCLDDPGVARLLPRVN----RPILTYGVTSQA--RLRGKILETGAASRFSVT 272 Query: 276 LQGK---SMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAI--KALSVFHPKEGRGKR 329 L GK M + H G N+L LG + + L A ++ + AL+ F G G+R Sbjct: 273 LDGKDLGEMRLAHPG-----RHNVLNALGAIGLSLEAGIELPVIAAALAKFG---GVGRR 324 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMC 379 + + ++D+ Y +PA ++A ++ + PH R A+ GD C Sbjct: 325 FERKGERNGVVVVDD-YGHHPAEIRATLATARTVYPDRRLVVAFQPHRFSRTKALFGDFC 383 >gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. e14] gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. e14] Length = 473 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 25/193 (12%) Query: 63 KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAIT 114 +GA LVV + + + G +PV+G + +A RLR A +A+T Sbjct: 72 EGAELVVTAPGWKPDKPLFQAAGRAGVPVWG---------DVELAWRLRGPDAAPWLAVT 122 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 G+ GKTTT +ML L + A +G +IGV L A + + + + + +S + Sbjct: 123 GTNGKTTTVQMLAAILKAAGLRTAAVG----NIGVSLLDAVLG-EEKYDVLAVELSSY-Q 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + L R H A + +AP HL +E A+ K ++EG + ++ D + +L Sbjct: 177 LHWAPSL-RAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEG-NRVACVYNVADKATEDL 234 Query: 235 LKAKSHALGIKTI 247 ++A G + + Sbjct: 235 VRAADVEEGCRAV 247 >gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] Length = 492 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 115/276 (41%), Gaps = 41/276 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + P F + G DGH F AV+ GA V+ D+ + +P Sbjct: 23 ITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVLSEQDLDVPATIVKVP-- 80 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D A+ LA + + +I +TG+ GKTTT ++ L K IG+ + Sbjct: 81 ---DTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQTGLIGTIH 137 Query: 145 NHIG---------------VPLTLARM-PVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG + + RM V+ D+ I E+ SH LG +R H Sbjct: 138 MRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVS-SHALELGRVRG----CEIH 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 AV T + HL +E AK+ +F L ++ T LN DD EL + Sbjct: 193 TAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASELYATVT 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 A + ++G + AD + ++ + S+ + V+ Sbjct: 253 PA----RVITYGIDQPADVRAKQIEITSKGTSFTVE 284 >gi|238060043|ref|ZP_04604752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp. ATCC 39149] gi|237881854|gb|EEP70682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp. ATCC 39149] Length = 452 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 134/356 (37%), Gaps = 42/356 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 + +TGS GK+TT +++ L+++ + + +IGVPL +P D D + EL Sbjct: 114 VGVTGSKGKSTTSSLISHLLTAVDRPNV----FGGNIGVPLL--DLP-DADLYVLELSSY 166 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ P +AV+T + P HL G E K + TI +N D Sbjct: 167 QCADL-----TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLLA--HGPQTIVVNGADP 219 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + LG + G W + + V +G Sbjct: 220 RL------AAELGDRPAVRAGSPDTTHVA----PGPDGTPWFHLGDRPLFPRAVLPLVGR 269 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPK-EGRGKRYRCALNQGFFTLIDESYNAN 349 H N+ + L +++ L DV AL+V +G R + T +D++ + Sbjct: 270 HNEGNLCVALAVLAALGVDVVARADALAVAVAGFQGLAHRLTEIADPSGLTFVDDTLATS 329 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV-LSLYNISHVWLSG 408 P + AI EGR + V+ + G LAE +++ I SG Sbjct: 330 PYAAMHAIDAY-------EGRPVTVIVGGADRGLDYAPLREHLAEREITVLGIPD---SG 379 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLIN 462 ++A LPR +E +D L ++ + L D VV+ S + + R N Sbjct: 380 QRIVATLAGLPRV----RAEVVDDLVAAVRRARELTPADGVVLLSPAAPSYGRFRN 431 >gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626] gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626] Length = 470 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 26/260 (10%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + TI A+ G+ GKTTT M+ L + ++ G + T R D+ Sbjct: 109 RGRKTI-AVAGTHGKTTTSSMIATMLDKMDLDPSFLIGGVVEGYD----TNGRNGSG-DY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E S G +LT P++ VIT I HL ++ +E I + L+ + T Sbjct: 163 FVCEADESD-GSFMYLT----PNVIVITNIEADHLDHYGTLENIEKTFCDFMRLLDPSET 217 Query: 223 IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGK 279 + +N D+ + EL ++ + + S+G S+ D+ + R Q E G Sbjct: 218 VIINGDNPHWVELARSTG-----RKVVSYGFSETCDYVCRARMRTQGIENPLSVTTPSGA 272 Query: 280 SMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 ++VV G H N L IL D+ A +ALS F +G +R+ + Sbjct: 273 CIDVVLPASPGTHNIANACAALATADILGYDLSEAARALSQF---KGARRRFTHVGDICG 329 Query: 339 FTLIDESYNANPASMKAAIS 358 T++D+ Y +P +KA +S Sbjct: 330 ITVVDD-YGHHPTEIKATLS 348 >gi|154149379|ref|YP_001406492.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381] gi|153805388|gb|ABS52395.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381] Length = 479 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 34/297 (11%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELG 168 II IT S GKT+ K L L K S N G+ + + D I E G Sbjct: 163 IIQITASFGKTSIKNFLFELLKDDFKVQKTPRSVNTLNGIIRDINENLSYDTKIYIAEAG 222 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 G+I+ +T + P I ++ I H+ F IE I + K E + FL+ Sbjct: 223 ARKNGDIKEITQFLNPQIVLVGEIGAQHIEYFKSIENIRATKLESLSS-NRLKHAFLHST 281 Query: 229 DSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LLK +++ + K I +F + N D ++L+ KS E + Sbjct: 282 ----TLLKENETNTIYDKQIANF--TANLD---------------GIKLEMKSGEKIFAE 320 Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 I G AQN+ + I L + + K H E R + + N+ F +ID+S+ Sbjct: 321 ILGDFNAQNLAACILIAKFLGINAEKIAKNAKNLHSVEHRLQ--KIMTNEKF--IIDDSF 376 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNIS 402 N N M A+ ++ + + R++ + + E E+++ I + E+ L I+ Sbjct: 377 NGNLKGMCASYDLVK----NYKSRKVIITPGIVEGTKEMNEILGIKINEIFDLVMIT 429 >gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] Length = 498 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 30/327 (9%) Query: 24 QGF---VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASI 78 +GF +G+ D R + P++ F A+ G +D + + ++ GLV+V+ D + Sbjct: 19 RGFYADCSGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAY 78 Query: 79 GSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S S+ PV + +L L TIIA+TG+ GKTT L +L+ + K Sbjct: 79 QSASVLPVLHLKTMLADL-AFGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKA 137 Query: 138 ACIGS--------YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 A IG+ H G+ L F + S +G + V Sbjct: 138 AVIGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACV 197 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHA 241 +A+ T ++ HL + +K I +N DDSF E L H Sbjct: 198 SIDVALFTNLSQDHLDYHGDMAAYGRSKM-ILASWPTLRLAVVNADDSFGVEFLAHVQH- 255 Query: 242 LGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + I + G AD Q+ + +E+++ G ++ IG A NM + Sbjct: 256 ---RNIDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALV 312 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGR 326 + L D +AL+ P GR Sbjct: 313 FATLVRLGYDASEVKRALAGVTPAPGR 339 >gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas acetoxidans DSM 684] gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas acetoxidans DSM 684] Length = 448 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 20/181 (11%) Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATI 110 GHD AV + A L+VV+ + L++PV +D + ++ A+R A + Sbjct: 59 GHD---DAVFQQADLIVVSPGV-----PLTVPVLAKAIDRGIPVWGEVEYASR-HLTAPV 109 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT E++ L K G +IGVPL A DVD+ + EL Sbjct: 110 IAITGTNGKSTTTELVGQMLRGCGKRVFVGG----NIGVPLIEA-AGQDVDYVVVELSSF 164 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L I L P A++ ++ HL + + +AK IF LN +D Sbjct: 165 QLETIDQL----HPRYALMLNVSVDHLDRYPDMAAYVAAKKAIFANQTADDIAVLNGEDE 220 Query: 231 F 231 Sbjct: 221 L 221 >gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae] Length = 515 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 53/280 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M I YA G P ++ G+ + Sbjct: 145 IAIAGTHGKTTTTAM-------IASIYAQAGLD-------------PTFINGGLVKAAGV 184 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +AVIT I H+ + G E++ Sbjct: 185 HARLGTSRYLIAEADESDASFLHL-QPLVAVITNIEADHMETYDGDFEKLKQTFISFLHN 243 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + L DD L + +G + I ++G S +AD ++ +KQ Q + V Sbjct: 244 LPFYGRVVLCIDDPVVRSLLPQ---IG-RYITTYGFSDDADVRITSYKQRGNQGFFTVAR 299 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + ++ + + + G H A N + + + D + AL F +G G+R+ N Sbjct: 300 ENRADLAFILNAPGRHNALNATAAIAVATEEGIDDSAILTALKKF---QGTGRRFDLLGN 356 Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPH 366 +G L+D+ Y +P + A I + P+ Sbjct: 357 FPLADVNGKKGSVMLVDD-YGHHPTEVDATIKAAKEGWPN 395 >gi|322421361|ref|YP_004200584.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18] gi|320127748|gb|ADW15308.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18] Length = 461 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 21/251 (8%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT M+ +A I T IG N +G L + G F + Sbjct: 108 VAVAGTHGKTTTTSMVATLLAKGGIDPTM-VIGGRLNSLGSNARLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL L+ P IAV+T I HL +SGIEEI E + G L D Sbjct: 160 EADESDGSFL--LLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKVPFYGLAVLCLD 217 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHG 287 + + + K S+G S ADF+ + + +G K E+ Sbjct: 218 NGNIADILPRVK----KRFTSYGLSAQADFRATDVRLSGFSTSFVAHHKGVKLGEITFSM 273 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + L +T + F G G+R+ ++D+ Y Sbjct: 274 PGAHNVLNALAAIAVAMELDIPFETIQEGFKAFG---GVGRRFSLKGEVNGIMVVDD-YG 329 Query: 348 ANPASMKAAIS 358 +P ++A ++ Sbjct: 330 HHPTEIRATLA 340 >gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens] gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens] Length = 456 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 14/258 (5%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165 KA I ITG+ GK+TT ++ L S A G +IG+P L L + I Sbjct: 112 KANYIGITGTNGKSTTTSLINHILQSNNYKSALGG----NIGIPVLNLPNFNNSNEHYIL 167 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L L + +IA + +I P HL ++ E+ +AK IF + Sbjct: 168 ELSSYQLD----LMLNYKFNIAALLSITPDHLDRYASFEDYKNAKLRIFNNQNHNDFAII 223 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + ++ E + + +TI + + K ++ E Q ++++ Sbjct: 224 SLNNHINEGIYNQLIIKNTQTIIPTSSQQLLKKGISVIKDKIYDNYFEN--QAFNLDLPS 281 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG H A+N+ M I I+ + IK L+ + G R L + +++S Sbjct: 282 SLIGPHNAENIAMAYTIAKIINLNSKQIIKNLNTY---IGLPHRMELFLKTEKLSFVNDS 338 Query: 346 YNANPASMKAAISVLSQI 363 N AS K A+ I Sbjct: 339 KATNIASTKEALRSFKNI 356 >gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 465 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 93/443 (20%) Query: 64 GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 GA LVV N +M+ + L+IP +LG + ++ I + GS Sbjct: 67 GANLVVYTAAVKEDNPEMIRA-RELNIPTIDRATLLGEI--------MKKYKYGIGVAGS 117 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT ++++ L + +Y+ P L VDV G +G S Sbjct: 118 HGKTTTTSLISVLLEEM--------NYD-----PTVLVGGEVDVIGGNVRVGKSDY---- 160 Query: 177 FLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 F+T P+IAVI + HL F I+ I + + + K G + Sbjct: 161 FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPKDGFVVACG 220 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DDS +LK + I +FG N + + K E+ + S +V ++ Sbjct: 221 DDSNTMSVLKNVD-----RNIITFGIDSNCTWNAKNIK-FDEKGF-------PSFDVYYN 267 Query: 287 G----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G +G H N L TL + +L D+ + + F +G +R+ Sbjct: 268 GVFIQNFELSIVGKHNIYNALATLAVCHLLGVDIKSTPSIIKKF---KGTHRRFEFKGTL 324 Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +ID+ Y +P +KA +S ++ PH R ++L D + S Sbjct: 325 DGAIIIDD-YAHHPTEIKATLSSALNYPHNRIICIFQPHTYSRTYSLLQD------FATS 377 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443 F D A++ + +I ++ KD R +Y + + +++S + Sbjct: 378 F--DNADITIITDIYAAREKDTGIVHAKDLAKLIRDRGNETYYIKEFTDIVDYLRSIIKS 435 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GD+V+ + Y + N+LL Sbjct: 436 GDLVITIGAGDV--YEVGNMLLN 456 >gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] Length = 510 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 108/402 (26%), Positives = 161/402 (40%), Gaps = 40/402 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T DLL + + + P ++ + DSR + P F AI+G H DGH+FI A+ GA Sbjct: 4 TLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123 VVV+ S +PV V D AL LA A + T I ITG+ GK+TT Sbjct: 64 AAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKGKSTTT 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------LGMSH 171 ++ L++ +T I + + IG R P D E + Sbjct: 124 DLTAQLLAAAGRTVGMISTVDFQIGT----RRWPNDTRQSTPEAPEVQALLREMVVAGCD 179 Query: 172 LGEIRFLTHLVRPH----------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKT 220 I +H + P +AV+ I HL E+ + KA++F L E+ Sbjct: 180 TAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERH 239 Query: 221 GTIF--LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G + +N DD A + ++ Y+ AD Q + S M + Sbjct: 240 GPTWAIVNADDPHHGTFLAAVPSQTMRLRYAL--HAPADVQGQIVHSGPASSHMRIHSPW 297 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +EV G A N+L L + LT V A +V H + RG+ + Q F Sbjct: 298 GEIEVNVPLPGRFNASNVLAALTVA--LTQGVPLERAAAAVAHVRAPRGRMVSINVGQPF 355 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 ++D Y NP S + + + + P GR IAV G E Sbjct: 356 TVIVD--YAHNPDSFE---QIFTMLRPQVTGRIIAVFGSAGE 392 >gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 43/238 (18%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ--------KGAGLVVVNTDMVASI 78 V G+++DSR I P F A++G + G ++ A+ + AG V D + Sbjct: 22 VGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALAAGAGAVLWEPAGDVAPEPDERTAA 81 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 +P+ V D+ L +AARL ++ ++ +TG+ GKT+ + L L Sbjct: 82 ERAGVPLIAVPDLGRRLGP--IAARLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDREA 139 Query: 135 KTYACIGSYN---------------NHIGVPLTLARM------PVDVDFGIFELGMSHLG 173 +G+ + V TLAR+ V ++ L + Sbjct: 140 HRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRVA 199 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +RF H AV+T + HL + A AK+ +F G+ LN DD+F Sbjct: 200 GVRF-------HTAVLTNLGRDHLDYHGDLAGYAEAKSRLF-GVPGLQWAVLNLDDAF 249 >gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] Length = 499 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + +DSR I + F AI+G DG FI A+ +GA V+ D + G + ++PV Sbjct: 34 LELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQVEYREAVPV 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+++A +I +TG+ GKTT +++ L + A +G+ N Sbjct: 94 MYLSELDQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153 >gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] Length = 494 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 19/221 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR+ + F A+ G DG FI AV G V+ D G + + Sbjct: 27 VEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGLIEWLDT 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV ++++ L++LA +I +TG+ GKTT +++ L + + A +G+ Sbjct: 87 VPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 143 YNN----HIGVPLTLARMPVDVDFGIFELG----------MSHLGEIRFLTHLVRPHIAV 188 N ++ +++ + EL +S G ++ + + V Sbjct: 147 TGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKALDFEVGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 T ++ HL +EE A AK +F K +N DD Sbjct: 207 FTNLSRDHLDYHGTMEEYALAKKSLFTQ-HKCKHAVINVDD 246 >gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [uncultured Desulfobacterium sp.] Length = 481 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 13/194 (6%) Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-TGTIFLNYDDSFFELLKAKSHAL 242 P IA++T+I H F +E + + + E + + I + D + L++ S Sbjct: 191 PLIAILTSIEFDHADIFRDLEHVKETFSRMIEKISPGSSLIVFDRDTNIKSLIRNSSC-- 248 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLG 301 I +GK+ ++D++L ++ ++ EV +GK+ IG H N L + Sbjct: 249 ---KIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSVIA 305 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L VDT AL F EG +R + T++D+ + +P ++K I + Sbjct: 306 AADNLKVPVDTIHDALETF---EGVKRRQEIRGERKGITVMDD-FAHHPTAVKETIKAVR 361 Query: 362 QISPHGEGRRIAVL 375 P +GR IAV Sbjct: 362 PFYP--DGRVIAVF 373 >gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] Length = 487 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + F A+ G DGHDFI A+ GA V+ + + S I Sbjct: 24 IQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAKAVIF--EKLPSELQKGITYV 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + A+ +A K ++A+TG+ GKTTT +L + + + + Sbjct: 82 QVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVTLLHQLFMRMGYSTGLLSTVE 141 Query: 145 NHIG---VPLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHI-------AVI 189 N I +P T P V + E G +H +V+ I AV Sbjct: 142 NKINEEVIPAT-HTTPDSVSIQALLKQMLEAGCTHCFMEASSHAIVQERIAGLKLAGAVF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIK 245 T I+ HL +E AK ++F+ L K +N DD + K G+K Sbjct: 201 TNISHDHLDYHLTFDEYIKAKKKLFDELPKAAFALVNGDDKRGMVMLQNCKGSHQTFGLK 260 Query: 246 TIYSF 250 T F Sbjct: 261 TPAEF 265 >gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270] gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270] Length = 441 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%) Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P+IA I I P H+ + K +IF+ ++K G + LN DD + ++ + Sbjct: 173 KPYIASIGNITPDHIDWHGSFDNYIEDKLKIFKNMDKNGNLILNIDDEILGKINVENTNV 232 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ +KNADF L SE ++ + SM+ + +G H AQN+L++L I Sbjct: 233 TKISL----NNKNADFYL------SENNFYHNDKKLFSMKDLKI-LGKHNAQNVLISLAI 281 Query: 303 VSILTADVDTAIKALSVFHPKEGR 326 +DT I A F E R Sbjct: 282 CYNYGIIMDTIIFACKNFGGVEHR 305 >gi|293510628|ref|ZP_06669333.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|291466519|gb|EFF09040.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus M809] Length = 437 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGVGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G ++ D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desmospora sp. 8437] Length = 70 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 + G+ +DSR + P + F A+KG DGH FI AV+KGA VV+ +M Sbjct: 23 ITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVEKGARAVVLEEEM 70 >gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella denitrificans ATCC 33394] gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella denitrificans ATCC 33394] Length = 445 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 100/262 (38%), Gaps = 29/262 (11%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVD 161 R IIAITGS GKTTT ++ + G +IG P+ LAR D Sbjct: 105 RQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAG----NIGTPVLEAWLARKGKPAD 160 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L T L+ A I+ HL + + + A AK IF G Sbjct: 161 VWVLELSSFQLET----TPLLDADAAACLNISEDHLDRYDDLLDYARAKDMIFNG---KA 213 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKS 280 LN DD+F +K +T++ F + D+ W+ EV L ++ Sbjct: 214 VQVLNADDAFCRAMKRDG-----RTVHYFSLQQPQDYH---WQAGAGSLHHQEVLLMPQT 265 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + G H N+L L + + D + + F +G R + T Sbjct: 266 DIPLQ---GSHNMANVLAALALCESIGLPRDRLLAHVKTF---KGLPHRVEKVGEKNGIT 319 Query: 341 LIDESYNANPASMKAAISVLSQ 362 ID+S N + AAI+ L + Sbjct: 320 FIDDSKGTNVGATVAAIAGLPE 341 >gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus brevis NBRC 100599] gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus brevis NBRC 100599] Length = 454 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 31/203 (15%) Query: 61 VQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + +G LVV N + V +L IPV + ++ +A+++ +KA II IT Sbjct: 66 IHEGVSLVVKNPGIPYEAAPVKQAQALGIPV---------VTEVELASQI-AKAPIIGIT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLG 173 GS GKTTT ++ + I K +IG L LA + G E ++ L Sbjct: 116 GSNGKTTTTTLVGL----IFKEAGLDAKVGGNIGTVLCGLAE-----EAGPDEWLVAELS 166 Query: 174 EIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + + T RPHI V+ + PAHL +EE +AK ++F L YD Sbjct: 167 SFQLMGTRKFRPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTADDAAILPYDQP-- 224 Query: 233 ELLKAKSHALGIKTIYSFGKSKN 255 E+++ K L +IY F KS+ Sbjct: 225 EIVE-KCKDLP-ASIYYFSKSQE 245 >gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 529 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS---- 82 + G+++ S PQ F AI G G F A K AG V V TD + ++S Sbjct: 48 IAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAA--KEAGAVAVLTDAAGASRAVSEGLG 105 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV VDD + LA A ++ A+TG+ GKTTT ++ AL+++ A Sbjct: 106 LPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAALC 165 Query: 141 GSYNNHIG 148 G+ +G Sbjct: 166 GTVETRVG 173 >gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 15998] gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 11379] gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] Length = 491 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 96/423 (22%), Positives = 157/423 (37%), Gaps = 51/423 (12%) Query: 9 DLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ H++ P G++ D+ + P F A+ G G + AV +GA Sbjct: 5 DLMAGQDHHALRGTPDRTDITAGVTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAV 64 Query: 67 LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK 123 V+V+ +L + V DV A +A +IAITG+ GKT+ Sbjct: 65 AVLVDEQAPPLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGKTSVS 124 Query: 124 EMLTIALSSIKKTY-ACIGSYNNHIG-----VPLTLARMPVDVDF------------GIF 165 M L ++ IG+ + IG +P ++ P D G Sbjct: 125 YMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRACGSV 184 Query: 166 ELGMSHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L + +G LTH + + V T + HL + +E AK +F+GL + Sbjct: 185 VLEATSMG---LLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRRAV 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + N DD L A L + ++ +AD++ + S + G+ Sbjct: 242 V--NADDP----LGAGIRKLMAGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYP 295 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G N L T+ +L + + AL GR +R + + G ++ Sbjct: 296 AAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQ--IPGGTSVIV 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMGELSQSFHIDLAE 394 D Y +P S+ VL+ I GR I V G EMG ++ + H DL Sbjct: 354 D--YAHSPDSLN---KVLTTIRGFARGRVITVFGCGGDRDTTKRAEMGAIAGT-HSDLCV 407 Query: 395 VLS 397 + S Sbjct: 408 LTS 410 >gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter hydrossis DSM 1100] gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter hydrossis DSM 1100] Length = 441 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 14/141 (9%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L ++++ AAR +++ I ITGS GKTTT ++ L++ A G+ V Sbjct: 92 LPVISEIEFAARY-TRSFTIGITGSNGKTTTTNLVYHLLATAGMDVAMGGN------VGK 144 Query: 152 TLARMPVDVD--FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIAS 208 + AR+ + D F + EL L IR RP IA+I I P HL + +E+ A+ Sbjct: 145 SFARIVAERDYPFYVLELSSFQLEGIREY----RPDIAMILNITPDHLDRYDYQLEKYAA 200 Query: 209 AKAEIFEGLEKTGTIFLNYDD 229 AK I + + T N DD Sbjct: 201 AKFNIVKAQQAEDTFLYNADD 221 >gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum parvum NCIB 8327] gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum parvum NCIB 8327] Length = 467 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--LARMPVDVDFGI 164 +A II ITG+ GKTTT ++ + + +IG P + ++ M D D + Sbjct: 107 RARIIGITGTDGKTTTATLIHRICEADGEQQGYRAFSVGNIGTPFSSEVSGMEPD-DIAV 165 Query: 165 FELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 EL L G F RP+IAV+T I P H+ + G I A AK I + T Sbjct: 166 LELSSYQLEGCSSF-----RPNIAVLTNITPDHMDRYGGDIHAYARAKFRIHASQQAGDT 220 Query: 223 IFLNYDDSFFELLKA 237 + N+DD LL+A Sbjct: 221 LIYNHDDP---LLRA 232 >gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894] Length = 488 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M +SSI YA G P V+ G+ + + Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S++AD ++ ++Q Q + Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVENYRQTGAQGHFTLVR 276 Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 Q K + V + G H A N + + + + D ++AL F +G G+R+ Sbjct: 277 QDKPELHVTLNAPGRHNALNAAAAVSVATEEGIEDDAILRALESF---QGTGRRF 328 >gi|134095970|ref|YP_001101045.1| UDP-N-acetylmuramate--L-alanine ligase [Herminiimonas arsenicoxydans] gi|166224695|sp|A4G8T7|MURC_HERAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|133739873|emb|CAL62924.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Herminiimonas arsenicoxydans] Length = 469 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 149/382 (39%), Gaps = 50/382 (13%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++ L+ + T+ IG N G L Sbjct: 98 LAELMRLRRG---IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGLLNSAGANAKLGA 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL + P I VIT I H+ + E++ A E Sbjct: 154 -------GEFIVAEADESDASFLN--LSPVIEVITNIDADHMETYEHDFEKLKQAFVEFT 204 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + L G L DD+ + + K I ++G ++A + K V Sbjct: 205 QRLPFYGVAVLCLDDATVREIMPRIS----KLITTYGFHEDAMVRAVDAKAVDGHMQFTV 260 Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-- 331 G + M+V + G H QN + I L KAL+ F G G+R+ Sbjct: 261 IQDGYAPMQVSLNQPGMHNVQNACAAIAIARELGVSDHATQKALTEF---TGVGRRFTRY 317 Query: 332 -----CALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 A+N G F L+D+ Y +P A IS P GRR+ VL Sbjct: 318 GEISFSAVNDKPAGSFALVDD-YGHHPVETAATISAARGAYP---GRRL-VLAFQPHRYT 372 Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL----- 435 ++ D +VLS + ++ V+ +G + D + + + +D +F+ Sbjct: 373 RTRDLFEDFVKVLSTTDMLLLAEVYAAGEQPIVAADGRTLAHALRVAGKVDPVFVEHIVD 432 Query: 436 ---FIQSSLVDGDVVVVKSSNS 454 I + + DGDVV+ + S Sbjct: 433 MPATIMNIVRDGDVVITMGAGS 454 >gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] Length = 494 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 147/381 (38%), Gaps = 40/381 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G+ P + GI++DSR + F A+ G G F A+ GA ++ + + Sbjct: 19 GVDP--MIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGAQIVA 76 Query: 80 SL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123 L ++ + V+D AL A T++A+TG+ GKT+ Sbjct: 77 QLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWVELGH 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----GMSHLGEIRFLT 179 + + + + ++ +++ N+ P+TL SH E R L Sbjct: 137 QAVNLGTTGVEGSWSH--PLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLEQRRLD 194 Query: 180 HLVRPHIAV--ITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLK 236 + H+A T HL E +AKA +F L G +N DD E ++ Sbjct: 195 GV---HLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMR 251 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + A G + I S G+ D L + + M K + + IG A+N+ Sbjct: 252 AVAAARGHEVI-SVGRGLG-DLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENI 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKA 355 L+ G+V D L H + RG+ A + G +D Y P ++ Sbjct: 310 LLACGLVIASGEDPQAVFDTLP--HLQTVRGRMQLAATRENGATVFVD--YAHTPDAVAT 365 Query: 356 AISVLSQISPHGEGRRIAVLG 376 AI L PH GR +A++G Sbjct: 366 AIKAL---RPHVLGRLVAIVG 383 >gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] Length = 503 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 45/389 (11%) Query: 18 SIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-------- 65 ++G+ QG + G+S+DSR + FFA+ G G DFI +A++ GA Sbjct: 14 ALGLRGQGGREATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTDAQ 73 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTT 122 G + ++ S +L I +D GA LA+ A L A T+IA+TG+ GKT+ Sbjct: 74 GAQIAANELAESTAALII----AEDPRGA---LALTASLWFGAHPETMIAVTGTNGKTSV 126 Query: 123 KEM-----LTIALSSIK-KTYACIGSYNNHIG----VPLTLARMPVDVDFG----IFELG 168 + + L+++ T G++ + + P+TL R + Sbjct: 127 STFARQIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEA 186 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227 SH + R L +V A T + HL E AK +F L + G +N Sbjct: 187 SSHGLDQRRLDGVVL-SAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINI 245 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + G++TI + G+ +A +L + S + Q S Sbjct: 246 DDPKGPEVVQIAQNRGLETI-TVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKL 304 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+L+ +V D + L GR ++ G +D ++ Sbjct: 305 IGGFQADNVLLATALVIAAGGDPEEVFDTLPYLTTVRGR-MQHAATRRNGGSVFVDYAHT 363 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 + A + L + PH G+ IA++G Sbjct: 364 PD-----AVATALMAMRPHVMGKLIAIVG 387 >gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter piscolens W5455] gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter piscolens W5455] Length = 436 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 125/324 (38%), Gaps = 78/324 (24%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 +D V+ + ++PV G D+L K IIA+TG+ GKTT ++ L Sbjct: 76 KSDAVSMARAKNVPVQGELDLLAPF----------LKGKIIAVTGTNGKTTCTALIAHLL 125 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + G+ IG PL A D + EL L + T L RP +AV+T Sbjct: 126 RNAGLNAVSAGN----IGNPLA-AHADRSYDAIVMELSSFQL---HWNTQL-RPDVAVLT 176 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELLKAKSHALGIKTIYS 249 +AP HL E + K +IF L + + + +D F + ++ + + Sbjct: 177 NLAPDHLDWHGSYENYKNDKCKIF--LPRQEECYAVTHDVDAFRVPAGRA-------VCA 227 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-------------IGYHMAQNM 296 G+ + + + G+ + +V HG +G H +N Sbjct: 228 LGRGN-----------------LRIDMDGRDVFLVGHGRRRLLFHKSSLKLLGSHNLENA 270 Query: 297 LMTLGIVSILTADVD--TAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352 M+ V++ DVD + H +RC Q ID+S N A+ Sbjct: 271 AMSCAAVALAFRDVDPSAGLAGFEALH--------HRCEPVGEQNGVLFIDDSKGTNVAA 322 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + AA+ ++ GR++ +LG Sbjct: 323 VIAALHSIN-------GRKLIILG 339 >gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans A8] gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans A8] Length = 468 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 55/374 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L + D+ + E Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL L P +A++T I H+ + + + SA E + L G+ L Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCS 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------K 279 DD+ E++ S + I ++G ++ A Q+R ++ + M +Q Sbjct: 218 DDANVREIMPFVS-----RPITTYGLNEEA--QVRAYEVQPAGTRMRFNVQRTHRDTLLP 270 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---- 335 ++V + G H +N L + + + L + +ALS FH G G+R+ + Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVADEAICEALSSFH---GVGRRFTQTGDFPVP 327 Query: 336 ----QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 G FT+ID+ Y +P M A ++ P RRI + F D Sbjct: 328 ANHGGGTFTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382 Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440 VL + ++ V+ +G L D AL R++ V + E + L + Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDF 442 Query: 441 LVDGDVVVVKSSNS 454 + DGDVV+V + S Sbjct: 443 VRDGDVVIVMGAGS 456 >gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2] gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2] Length = 514 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I DSR + P F A++G DGHD++ A+++GA VVV + + Sbjct: 30 ITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVEDALERGAAAVVVQQRVPGKQRMVE---- 85 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D A+ ++AAR + ++ ITG+ GKTTT +L + IG+ Sbjct: 86 -VADTRKAM--ASIAARFYDNPSESMCLVGITGTNGKTTTSFILESIFAQAGHCVGVIGT 142 Query: 143 YN 144 N Sbjct: 143 VN 144 >gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11] gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11] Length = 487 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 53/321 (16%) Query: 170 SHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217 + LG RFL HL +P ++++T I H+ + G E + + L Sbjct: 166 ARLGSSRFLIAEADESDASFLHL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNL 224 Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G + DD ELL S + + ++G S +AD +L ++Q +QS+ VQ Sbjct: 225 PFYGQAVMCVDDPVVRELLPQVS-----RQVITYGFSDDADVRLINYRQVGQQSFFTVQR 279 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331 + ++ +++V + G H A N + + + + + + AL F EG G+R+ Sbjct: 280 KDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNF---EGAGRRFDQLGE 336 Query: 332 CALNQGFFTLIDESYNANPA----SMKAAISVLSQ------ISPHGEGRRIAVLGDMCEM 381 G L+D+ Y +P ++KAA + ++ PH R + D + Sbjct: 337 FETGNGSAMLVDD-YGHHPTEVDVTIKAARAGWAEKRLVMIFQPHRYSRTRDLYDDFANV 395 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFL 435 + ++D+ +L +Y+ ++G A AL R+I + T++ L Sbjct: 396 LD-----NVDVLIMLDVYSAGETPIAG----ADGRALCRTIRGRGKIDPVFVPTIEALPP 446 Query: 436 FIQSSLVDGDVVVVKSSNSCG 456 + + + +GD+++ + + G Sbjct: 447 VLANIIQEGDLILTQGAGDVG 467 >gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM603] gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM603] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ +G +IGVP L + +V+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F + + Q E + S E+ +G Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGREYLFARDNAVLASSELSL--VG 269 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ +V A+ AL K G +RC A N G +++S Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA V + + L Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V K +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPELKSGDMVLL--SPACASF 419 >gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria lactamica ATCC 23970] gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria lactamica ATCC 23970] Length = 445 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R D + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A K +IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKDKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ E + ++ LQG Sbjct: 252 ETGRLKQGDEDLIATQDIPLQG 273 >gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] Length = 520 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 16/227 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR + P F AI+G +DGH +I AV+ GA V+ + GS ++ + D Sbjct: 41 LAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICEA-LPEDNGSGAVYIRVAD 99 Query: 90 DVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147 R S+ +I +TG+ GKTTT ++ L+S IG+ I Sbjct: 100 SRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARLIADMLNSCGIPAGYIGTNLCRIA 159 Query: 148 GVPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHL--VRPHIAVITTIAP 194 G ++L R + +D G M L + +R AV T ++ Sbjct: 160 GRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSSHALVLDRVSGLRFRCAVFTNLSM 219 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 HL + A AK +F+ L+ G N DD + + ++ A Sbjct: 220 EHLDFHQTMAGYADAKQILFDQLDPEGFAVFNIDDPYASQMASRVAA 266 >gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1] gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1] Length = 473 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 42/367 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT ++ L++ + + IG LT A + + + + Sbjct: 119 IAVAGTHGKTTTTSLMASILAATGEAPTFV------IGGRLTSAGANAQLGSSAYLVAEA 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229 + FL HL +P ++T I H+ + G E++ E L G L DD Sbjct: 173 DESDASFL-HL-QPQTVIVTNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAVLCVDD 230 Query: 230 -SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHG 287 + E+L S + + ++G + ADF + Q ++ + +G+ +++ Sbjct: 231 ENVREILPTLS-----RPVLTYGIDQEADFYATEIVQTGRYCEFLAHRPEGEPLKIRLPM 285 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLID 343 G H N L T+ + + L D L F EG G+R++ AL G + Sbjct: 286 PGRHNVLNALATIAVATDLGVDASAIQAGLMGF---EGVGRRFQEQKPLALPNGSNVMFV 342 Query: 344 ESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + Y +P+ + A I + PH R + D + LSQ +D+ Sbjct: 343 DDYGHHPSEVLATIKAIRAGWPEKRLVMVYQPHRYTRTRDLYEDFVRV--LSQ---VDVL 397 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVK 450 +L +Y+ ++G +L ++ + +V H D L + + L +GD+++ + Sbjct: 398 LLLDVYSAGEAPINGADSRSLCGSIRQRGNVDPIHVGSEAD-LRSILSNVLREGDLLITQ 456 Query: 451 SSNSCGF 457 + G Sbjct: 457 GAGDIGM 463 >gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] Length = 486 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 147/384 (38%), Gaps = 65/384 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V G++ DSR + P F A+ G PH DGH FI A+++GA VV D+ + Sbjct: 19 VRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIPEALRRGAIAVVGEQDL-----T 73 Query: 81 LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML-----------T 127 L +P V D AL LA + +TGS GK+TT +L T Sbjct: 74 LPVPYARVADSRQALALLARRFYGEPDRALRLFGVTGSKGKSTTAFLLHHLLEEAALLST 133 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---SH---LGEIRFLTHL 181 + L + IG + P A + D G+ E + SH L + LT Sbjct: 134 VGLRLGGEARPPIGHFTT-PEAPEVYAFLREAADRGLREAVLEVSSHALALKRVEGLTF- 191 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V P +F G E +AK + +E++ LN + E L+ + H Sbjct: 192 ---RVGVFVNFYPDDHLDFHGTPEAYFNAKTLL---VERSDLAVLNTSLTHLERLRQRPH 245 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNM 296 L FG W + E+ + L GK EV IG H +N Sbjct: 246 LL-------FGPGGEV------WAEGVREEEGLRFTLHTPWGKG-EVHLPLIGAHNVENA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L ++ ++ LS F G R + F +ID ++ S++AA Sbjct: 292 LAASAAALAAGVPLEKVLERLSGF---PGVPGRMEVVQEKPFRVVIDFAHTGK--SLEAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCE 380 + L P +GR + V+G E Sbjct: 347 LRTL---RPTTQGRLLLVVGAAGE 367 >gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158] gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158] Length = 465 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY + G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFH--VLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G V A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAIVTANGDALSRALRAAGKVEPVFVATVDEVPGALAQVARNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii DSM 6725] gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 35/281 (12%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 ++ +I I+G+ GKTTT M+ L +YN P L V G Sbjct: 98 MKDFKNVITISGTHGKTTTTSMIGYILKK--------ANYN-----PTVLVGAFVKQLGG 144 Query: 164 IFELGMSHLGEIRFLTHL-----VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 F +G + ++ P I VI I HL F I+ I ++ + + + Sbjct: 145 NFVIGSKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIP 204 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 +G + +NYDD + +K + L + I K K F CS+ + E ++ Sbjct: 205 TSGFLVVNYDD---KNVKDIINQLNTQIICISTKEKTDIFA--DNISCSD-GYYEFDVKN 258 Query: 279 KSMEVVHH---GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + E++ H I G+H N L + S L + T +ALS F G +R Sbjct: 259 NNDEILAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEQALSEFR---GASRRLEKVG 315 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L D+ Y +P +KA ++ L +IS EG+ +A+ Sbjct: 316 EFNGIYLYDD-YAHHPTEIKATLATLKKIS---EGKVLAIF 352 >gi|71902948|ref|YP_279751.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS6180] gi|109892746|sp|Q48V60|MURC_STRPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|71802043|gb|AAX71396.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS6180] Length = 442 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 81/325 (24%), Positives = 132/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G + DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +DTA+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDTALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|320537962|ref|ZP_08037869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema phagedenis F0421] gi|320145215|gb|EFW36924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema phagedenis F0421] Length = 480 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/277 (18%), Positives = 114/277 (41%), Gaps = 33/277 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-- 163 + A I+A+TGS GK++T L L + + + +G +T++ + + G Sbjct: 111 TDAPILAVTGSKGKSSTVSALQYGLQGM--------GFRSFLGGNITISPLDFLSETGKD 162 Query: 164 ---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + EL L ++R L++P +AVIT + P H + + +E + K ++ Sbjct: 163 TPVVLELSSWQLADLRG-KKLLKPEVAVITPVMPDHQNWYGSMEAYVADKKLLYADQTPE 221 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 F NYDD + ++ +++ + ++ + + W S +++ + Q + Sbjct: 222 EFCFCNYDDQWGKIFASET----VAQVFWYSIKPLPENLCGAWLDKSGEAFFRLHAQAEP 277 Query: 281 MEVVHHGI---GYHMAQNMLMTLGIVSILT------------ADVDTAIKALSVFHPKEG 325 + ++ + I G + +N++ + + +D++ A K +V G Sbjct: 278 LRLLPNEIMVPGSILKENVMNAAAAIFLFVRKQRGSFADTALSDLELAAKLSAVMKTYPG 337 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 R QG +++ P + AA+ ++ Sbjct: 338 LEHRLEFFYEQGGVRFYNDTTATVPEATAAALDAFTE 374 >gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii ATCC 14266] gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii ATCC 14266] Length = 477 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 37/342 (10%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ +IPV D+LG L + +T + I G+ GKT+T M +A+ Sbjct: 84 NPELVAA-REQNIPVIRRSDLLG---------ELMTGSTQVLIAGTHGKTSTTSMAVVAM 133 Query: 131 SS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + ++A IG N G T A F + E S +R+ P IAV Sbjct: 134 QAAGMDPSFA-IGGQLNKAG---TNAHQGSGHCF-VAEADESDASLLRY-----SPDIAV 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGI 244 +T I P HL F E + L TG + + DD + E K K G Sbjct: 184 VTNIEPDHLDFFHTPEAYFQVFDDFASRLTDTGVLVVCLDDEHAAALGERQKTKVTVRGY 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + + + + ++Q S +++ + +EV G HM N L Sbjct: 244 GSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAG 303 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID--ESYNANPASMKAAISV 359 + DV + +S F G +R+ A+ G + ++ + Y +P ++A ++ Sbjct: 304 VLAGGDVAALAQGISEF---SGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTA 360 Query: 360 LSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + ++ G G+ I V M +Q F + AE LSL + Sbjct: 361 AREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLAD 400 >gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201] gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201] Length = 468 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 110 IIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +IA+ G+ GKTTT M +AL + ++ ++A IG++ +G D G + + Sbjct: 114 VIAVAGTHGKTTTSSMTAVALRAAGLRPSWA-IGAHVADLGANAGF-------DAGEWFV 165 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + F+ + P +AV+T + P HL ++ E A E + + + GT+ Sbjct: 166 AEADESDGSFMAY--HPEVAVVTNVEPDHLDHYGSAEAFHRAFDEFSDTIREGGTLVACA 223 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 DD L + G + S+G AD L Sbjct: 224 DDPGAARLAERRRTRG-GAVLSYGTDPGADVVL 255 >gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 454 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 165 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 166 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223 Query: 223 IFLNY 227 + NY Sbjct: 224 LICNY 228 >gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU045] Length = 449 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNY 227 + NY Sbjct: 219 LICNY 223 >gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T] gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T] Length = 471 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 45/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A I T+ IG N G L G + + Sbjct: 108 IAIAGTHGKTTTTSLVASILAEGGIDPTF-VIGGRLNAAGANARLG-------TGDYLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L+ P I+V+T I H+ + + A + L G L Sbjct: 160 EADESDASFL--LLNPVISVVTNIDADHMDTYGHDFGRVKQAFVDFLHRLPFYGVAVLCE 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKS--MEV 283 DD + E++ + K I +G S+ A+ + + + + V++ G + + + Sbjct: 218 DDPNVREIIPQVA-----KQIVRYGFSETANIRAENVRAEGGRMRFDCVRVNGTTSRLSI 272 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQ------ 336 + G H N L + + + + +KAL+ F+ R +RY AL+ Sbjct: 273 ELNLPGLHNVLNALAAIAVATEVQVPDAAIVKALAEFNGVGRRFQRYGEVALHDQDGDEA 332 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G FTL+D+ Y +P M A I+ P GRR+ + F D +VL Sbjct: 333 GRFTLVDD-YGHHPVEMAATIAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DFVKVL 387 Query: 397 SLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 S + ++ V+ +G + D +L R+I V + E + + I S+ DGD Sbjct: 388 STVDALLLAEVYAAGETPIVAADGRSLARAIRVAGTVEPVFVEEIADMPRMILSAARDGD 447 Query: 446 VVVVKSSNSCG 456 VV+ + S G Sbjct: 448 VVITMGAGSIG 458 >gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus halodurans C-125] gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans C-125] Length = 450 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 21/146 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A I+AITGS GKTTT ++ L + G +IGV + +AR D + Sbjct: 109 SEAEIVAITGSNGKTTTTSLVVEMLKGSAREPKVAG----NIGVVASDVAREATADDVIV 164 Query: 165 FE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 E +G SH RP +A++ I AHL E +AK +I E ++ Sbjct: 165 MEVSSFQLMGTSHF----------RPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMK 214 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGI 244 + N DD + A++ A I Sbjct: 215 EEDYFVYNADDPLVSKVAAETKATPI 240 >gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus equinus ATCC 9812] gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus equinus ATCC 9812] Length = 451 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A + S A II ITGS GKTTT M+ L++ ++ G + +IG P + +A+ D Sbjct: 106 AYMISDAPIIGITGSNGKTTTTTMIAETLNNGGQS----GLLSGNIGFPASEVAQTATDK 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T PHIAVIT + P H+ E AK I + + Sbjct: 162 DTLVMELSSFQL----MGTDTFHPHIAVITNLMPTHIDYHGTFENYVVAKWNIQKNMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 I LN++ + L K+ A Sbjct: 218 DFIVLNFNQDLAKELAEKTAA 238 >gi|19745509|ref|NP_606645.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS8232] gi|25008810|sp|Q8P2E1|MURC_STRP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|19747627|gb|AAL97144.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus pyogenes MGAS8232] Length = 442 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G + DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIVNDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|332298510|ref|YP_004440432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema brennaborense DSM 12168] gi|332181613|gb|AEE17301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema brennaborense DSM 12168] Length = 511 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLARMPVDV 160 ++A IIA+TGS GK++T + L C + +G PLT Sbjct: 133 TQAPIIAVTGSKGKSSTVSAIHYGL--------CAAGFEAFLGGNITVSPLTFLDKTDGT 184 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + EL L ++R L++PH+AV+T I P H + + +E+ + K I+ + + Sbjct: 185 TPVVLELSSWQLADLRG-RRLLKPHVAVLTKIVPDHQNWYGSMEKYVADKKLIYADQDAS 243 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 DD + + A+++ T+ +G K + W Sbjct: 244 CWTVCAADDEWGDAFAAETNG----TVLRYGGGKLPAAECGAW 282 >gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter subterraneus DSM 13965] gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter subterraneus DSM 13965] Length = 549 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY----NNHIGVPL--TLARMPV 158 R + ++ +TGS GKTTT +L L + +IG PL + R+P Sbjct: 176 RCRGKVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVDRIPP 235 Query: 159 D----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + ++ F+L + H P +AV + P HL +E A+AKA I Sbjct: 236 EALVVLELSSFQLELCHRA----------PDVAVYLNLRPNHLDIHGTMEAYAAAKARIV 285 Query: 215 EGLEKTGTIFLNYDDS 230 E E G LN D+ Sbjct: 286 ELQEPDGWAVLNADEP 301 >gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] Length = 508 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 20/206 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I P + F A G DG+ FI A+ GA V+ + IP Sbjct: 23 IKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDPRNFVWKSEWRIPAL 82 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 VDD+ +A V K ++ ITG+ GKT+ A+ ++ A +G+ Sbjct: 83 AVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTAVLGTLG 142 Query: 144 ----NNHIGVPLTLARMPV-------DVDFG----IFELGMSHLGEIRFLTHLVRPHIAV 188 N G T V VD G + E+ L + R + +A+ Sbjct: 143 SGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF--SVAL 200 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF 214 +T ++ HL ++ A+AK+ +F Sbjct: 201 LTNLSRDHLDYHQDMDAYAAAKSSLF 226 >gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri MJ11] gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri MJ11] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 62/362 (17%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A +IAITGS GK+T + LT ++ +G +IG L + D + + E Sbjct: 107 NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 161 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L T ++ A ++ H+ + G+ + AK IF+ E +N Sbjct: 162 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAE---VCIVN 214 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD +++ KT+ SFG + D+ C E+ +E L +M ++ Sbjct: 215 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKDAMSLLAA 259 Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339 +G H N L+ + ++ + ++D + L ++ G +RC A N G Sbjct: 260 NELGLVGKHNIANSLVAIALLDAVGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396 +++S N AS AA+S L EG+ + +G + ELS + H DL L Sbjct: 314 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 365 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 +Y G ++L PRS+ ETMD + +L GD+V++ S +C Sbjct: 366 MMYCFGE---DGDQFVSLD---PRSL---LCETMDEAVATLYPTLNKGDMVML--SPACA 414 Query: 457 FY 458 + Sbjct: 415 SF 416 >gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5] gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5] Length = 458 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 84/391 (21%), Positives = 158/391 (40%), Gaps = 42/391 (10%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N +++ ++ IP+ ++LG L +++ IA++G+ GKTTT M++ L Sbjct: 83 NPELIEAVAR-KIPMLTRAELLGQL--------MKNYKNPIAVSGTHGKTTTTSMISHIL 133 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + I V L + ++ G E ++ E P I+VI Sbjct: 134 LE--------GNLDPTISVGGILQAIGGNIRVGNSETFITEACEYTNSFLDFYPRISVIL 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I HL F +E+I + + L GT+ +N + +E + + + I ++ Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFASLLPPDGTLVINSNIQNYEEICSGLNC----GIITY 241 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH---HGIGYHMAQNMLMTLGIVSILT 307 G S +D+ + ++ + L K + H G H N L ++ + +L Sbjct: 242 GSSPKSDYSAQNISY-DDKGCVSFDLLRKGIPAEHVVLSVTGDHNVSNALASIAVAELLD 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAISVLSQ- 362 D K L F + R + Y+ LN T I + Y +P A++KAA Q Sbjct: 301 IPSDMIQKGLISFSGTDRRFE-YKGTLNG---TTIVDDYAHHPTEIAATLKAAQHYPHQG 356 Query: 363 ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 PH R A + E LS + H+ LA++ + + +S + ++ L Sbjct: 357 LWCVFQPHTYTRTKAFFHEFAEA--LSHADHVVLADIYAARETDTLGISSSDL--AQELL 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 HY + + F++ + GD+++ Sbjct: 413 NLGTDSHYFPCFEEIENFLKKNCKPGDLLIT 443 >gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 486 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 117/290 (40%), Gaps = 30/290 (10%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSY-----NNHIGV 149 + AV ARL T + +TG+ GKTTT ML +AL + ++A G N H G Sbjct: 104 RPAVLARLMEGRTTLMVTGTHGKTTTTSMLIVALQHCGRDPSFAVGGELGEAGTNAHHGS 163 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + D + E P++AV+T I HL + + Sbjct: 164 GDCFVAEADESDGSLLEY---------------TPNVAVVTNIETDHLDFYGSADAYVGV 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSE 268 E L G + + DD L ++ LGI+ + Y G + L W+Q Sbjct: 209 FDAFVERLAPGGALVVCVDDPGAAALAERTAELGIRVLRYGSGPGGDHAATLLSWEQQGT 268 Query: 269 QSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ +QL G+S V G HMA N L L + A VD + L+ F EG Sbjct: 269 EAVAHIQLAGESHPRVMRLSVPGRHMALNALGALLAAVEIGASVDAVLDGLAGF---EGV 325 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAI-SVLSQISPHGEGRRIAVL 375 +R+ N G + D+ Y +P + A + +V + + G GR + V Sbjct: 326 RRRFELVGNAGSVRVFDD-YAHHPTEISATLAAVRTVLEQSGGGRSLVVF 374 >gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] Length = 520 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 150/394 (38%), Gaps = 75/394 (19%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 D+RS+A +AFFA D FI A+++GA V+V + G L V + Sbjct: 34 DTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGF--TGKLDASVT---HAV 88 Query: 93 GALNKLA---VAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN- 145 ALN+LA +A R + + ITG+ GKT+ + + ALS+ A +G+ Sbjct: 89 PALNELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGTLGTG 148 Query: 146 ------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRPHIAV 188 H G P + D G + M H G + IAV Sbjct: 149 FVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF----DIAV 204 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KAKSHAL 242 T + HL E +AKA +F E + +N DD+ L A++ A Sbjct: 205 FTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAV-INRDDAAGRRLLASTRGHARTIAY 263 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN------- 295 GI+ + +K A Q W L ++ G +H++ + Sbjct: 264 GIEGEHGDADAKGA-HQADAW------------LAASNVRATATGTAFHLSTSDWGNADV 310 Query: 296 MLMTLGIVSI----------LTADV--DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLI 342 + TLG+ ++ L ADV A+ L+ P GR +R L N +I Sbjct: 311 EVQTLGLFNVSNLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVI 370 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 D Y P +++ + L I+ G + + G Sbjct: 371 D--YAHTPDALEKTLEALRPIATARGGELVCMFG 402 >gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586] gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 65/362 (17%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ A +G +IGVP L + DV+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVP-ALDLISPDVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 + + ++ L + T FG A F + Q QG+ H Sbjct: 218 T--QTFPDRAAHLQVVT---FGVEHAAQFSV-------------AQHQGREYLFAHDEAV 259 Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQ 336 +G H N+L L ++ + A+ AL K G +RC + N Sbjct: 260 MACDELSLVGRHNVANVLTVLALLDSAGVNFRLALDAL-----KSYTGLTHRCQVVVDNH 314 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 G +++S N AS AA+S L EG+ ++G + + + + LA VL Sbjct: 315 G-IKWVNDSKATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVL 363 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + + L F V K +P + ++M+ + I+ L GD+V++ S +C Sbjct: 364 ATLPVQ---LCCFGVDGDK-FMPLHSSARFYDSMESIIRSIRPQLKSGDMVLL--SPACA 417 Query: 457 FY 458 + Sbjct: 418 SF 419 >gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM573] gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM573] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ +G +IGVP L + +V+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F + + Q E + S E+ +G Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGHEYLFARDNAVLASSELSL--VG 269 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ +V A+ AL K G +RC A N G +++S Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA V + + L Sbjct: 324 ATNVASTLAALSGLKV-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V K +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIVRSIRPELKSGDMVLL--SPACASF 419 >gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis BCM-HMP0060] Length = 454 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 165 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 166 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223 Query: 223 IFLNY 227 + NY Sbjct: 224 LICNY 228 >gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 494 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 116/313 (37%), Gaps = 63/313 (20%) Query: 30 ISIDSRSIAPQEAFFAIKG------PHYDGHDFI---------------------LHAVQ 62 I DSR + + F A+ G DG DFI L Sbjct: 20 IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPARVEAALADAP 79 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V + D +IG L +G D + ++A+TG+ GKTT Sbjct: 80 EGA-VVAAHDDPRVAIGLLGQARYGTDAL---------------PFPVVAVTGTNGKTTI 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLT----------LARM-PVDVDFGIFE 166 +L S++ + +G+ + + PLT L RM VD + E Sbjct: 124 TYLLDHVFSALGRRAGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALME 183 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFL 225 + L + R +R A++T + HL +E +AKA +F L + + Sbjct: 184 VSSHALDQRRVAG--IRFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAV 241 Query: 226 NYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD++ LL HA+G S + + + + +G+ E+ Sbjct: 242 NADDAWGRRLLGEVPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELS 301 Query: 285 HHGIGYHMAQNML 297 H +G H A N+L Sbjct: 302 SHLVGAHNASNLL 314 >gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens harbinense YUAN-3] gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens harbinense YUAN-3] Length = 458 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IIA+TGS GKTTT T +S I K +IG PL + D ++ + Sbjct: 114 IIAVTGSDGKTTT----TTLISEILKREGRRVHLGGNIGRPLLPEIETIRED----DVAV 165 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P +AVIT I P HL + E AK IF LN+D+ Sbjct: 166 VELSSFQLISMRRSPDVAVITNITPNHLDMHKDMVEYIQAKKHIFLHQNGCSKTVLNFDN 225 Query: 230 S----FFELLKAKSHALGIKTIYSFGKSKNAD 257 + E ++ + +K FG +AD Sbjct: 226 AITVPMAEEVRGQCLGFSLKEPPRFGCYTDAD 257 >gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus MB-451] gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus MB-451] Length = 440 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ +G +IGVP L + +V+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG + A F + + Q E + S E+ +G Sbjct: 218 ----VQTFPDHAAHLQVV-TFGVEQPAQFSVAE-HQGREYLFARDNAVLASSEL--SLVG 269 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ +V A+ AL K G +RC A N G +++S Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + + + LA V + + L Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGADFTP-----LAPVFATLPLQ---L 370 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V K +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIVRSIRPELKSGDMVLL--SPACASF 419 >gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] Length = 504 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 22/218 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-----SIP 84 I +DSR I + F AI G DG +I HA+ +GA ++ ++ + IP Sbjct: 26 IKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGASAIIAESNSLTKEDEFIKFLNQIP 85 Query: 85 VFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V ++ + + + L K +I +TG+ GKTT ++ I + A +G+ Sbjct: 86 IVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNGKTTVSHIVAQLAKLIGQKSAVMGT 145 Query: 143 YNNH-IGVPL------TLA--------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N IG + TL+ +M ++ I + +S G + T + A Sbjct: 146 IGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVKIVAMEVSSHGLDQGRTCSLSFSSA 205 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + T I HL + IE +K ++F + +F Sbjct: 206 IFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNRVFF 243 >gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium botulinum F str. Langeland] gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum F str. Langeland] Length = 458 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + ++ L+ Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DINLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] Length = 487 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 26/244 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR + P F A G H DG +I AV GA V+ ++ ++ + GV Sbjct: 14 VTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDSQDFVWNAAIKVSNLGVR 73 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN--- 144 ++ + ++A K +I +TG+ GKT+ + + A+ ++ K A IG+ Sbjct: 74 ELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIGTIGSGF 133 Query: 145 ---NHIGVPLTLARMPVDV-------DFG-------IFELGMSHLGEIRFLTHLVRPHIA 187 N G+ T P + D+ + E+ L + R + + A Sbjct: 134 ADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGR--VNAIEFDFA 191 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL ++ ASAK ++F+ T +N DD F + + A+S + K++ Sbjct: 192 VFTNLTRDHLDYHVTMDAYASAKQKLFD-WPSLRTAIVNADDDFGKKM-AESLRVNNKSL 249 Query: 248 YSFG 251 ++G Sbjct: 250 LTYG 253 >gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42] gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY] gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42] gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY] Length = 477 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 50/378 (13%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 RLR IAI G+ GKTTT ++ L + + T+ IG N G L + Sbjct: 103 RLRKG---IAIAGAHGKTTTTSLVASVLGEAGLDPTF-VIGGRLNSAGTNAKLGQG---- 154 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219 ++ + E S + FL L P +AV+T I H+ + + A + + Sbjct: 155 EYIVVEADES---DGSFLNLL--PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPF 209 Query: 220 TGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 GT L D+ + ++L L + S+G S++A+ + + Q VQ + Sbjct: 210 YGTAILCIDNPAVRDILP-----LVTCPVTSYGLSEDAEVRAVDVRAVGTQMHFTVQRRN 264 Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--- 331 ++VV + G H N L + + + L D ++AL+ F G G+R++ Sbjct: 265 GVTLPDLQVVLNLAGEHNVLNALAVIAVAAELNVPDDALLRALAGF---TGVGRRFQRHG 321 Query: 332 --CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 A G FTLI E Y +P M A ++ P GRR+ + F Sbjct: 322 DLPAQGGGHFTLI-EDYGHHPVEMAATLAAARGAYP---GRRLVLAFQPHRYSRTRDCFE 377 Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQ 438 D +VL + ++ V+ +G + D + + + T++ +F+ I Sbjct: 378 -DFVKVLGTADAVLLTEVYAAGEAPIVAADGRSLARALRVAGTVEPVFIDNVADMPQRIA 436 Query: 439 SSLVDGDVVVVKSSNSCG 456 + DGDVV+ + S G Sbjct: 437 AGARDGDVVLCMGAGSIG 454 >gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL F2-515] Length = 242 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 25/229 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA I+ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VP--LTLARMPVD-----VDFGIFELG 168 ++ + + IG+ IG P LTL D V + E+ Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 L + R + +AV ++ HL +EE A+AK+ +F L Sbjct: 178 SHALVQGRV--YGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQL 224 >gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum H04402 065] Length = 458 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + ++ L+ Sbjct: 226 LNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DINLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088] gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088] Length = 492 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 + + K ++ ITG+ GKTTT+EML + +S ++ + N +P AR+P DV Sbjct: 102 KYKVKKPVVGITGTNGKTTTREMLKNILKISGLEVPEHHLNIQGNTEFIPPLQARLPGDV 161 Query: 161 DFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + E+G + EI+ + VIT I+ HL N S +E K EI E +K Sbjct: 162 --AVVEIGTFGVKNEIKRSAKNSNVTVGVITNISRDHLKNIS-FQEYVECKKEITEVAKK 218 Query: 220 TGTIFLNYDD 229 + LN DD Sbjct: 219 ---LVLNADD 225 >gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis FRI909] Length = 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 161 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNY 227 + NY Sbjct: 219 LICNY 223 >gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis ATCC 12228] gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis SK135] gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis ATCC 12228] gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis SK135] gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU028] Length = 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVKSD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 161 --EYLITELSSFQLLGIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNY 227 + NY Sbjct: 219 LICNY 223 >gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] Length = 437 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 105/265 (39%), Gaps = 54/265 (20%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T ++ + +K +G N IGVP L + D D + EL Sbjct: 110 VIAITGSNGKSTVTDLTGVM---VKAAGLDVGVGGN-IGVP-ALDLLEQDADLYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+ + AK IF + +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIF---DHAALAVVNRDD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 ++ + +FG S N DF L ++ G ++ HG Sbjct: 218 Q-------ETFPDAEMPLVTFG-SDNQDFGL--------------EVDGNRTWLLDHGQR 255 Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335 +G H N L+ L ++ D A+ AL K G +RC A N Sbjct: 256 VVASDELKLVGKHNLSNALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310 Query: 336 QGFFTLIDESYNANPASMKAAISVL 360 QG +++S N AS AA+S L Sbjct: 311 QG-VKWVNDSKATNIASTMAALSGL 334 >gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] Length = 498 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 38/376 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 + G++ +S + P + F + G DG DF A+ GA +V+ ++ S + Sbjct: 24 ITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETDSDT 83 Query: 83 IP-VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP V D+ A ++A A T ++ +TG+ GKTTT ++ LS++ + A Sbjct: 84 IPCVIPAADMTTACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLSNLDQPTAL 143 Query: 140 IGS-YNNHIGV-PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVR 183 +G+ Y G + + P V+ FG+ E+ L + R L R Sbjct: 144 LGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFR 203 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV T + HL +++ AKA +F G +N DD + + L A+ LG Sbjct: 204 --VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMAR---LG 258 Query: 244 IKTIYSFGKS-KNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S+ S +AD ++ + + + S + +G + N+L L Sbjct: 259 SDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTPMGSASFSLPL--VGQYNLSNLLAAL 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D+ + +L F GR +R + + Q ++D Y P S++ ++L Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQDITVIVD--YAHTPDSLE---NLL 371 Query: 361 SQISPHGEGRRIAVLG 376 P GR I V G Sbjct: 372 KASRPFIPGRMICVFG 387 >gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces coelicolor A3(2)] gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces lividans TK24] gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces coelicolor A3(2)] gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces lividans TK24] Length = 471 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%) Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + G +PV+G ++ L L R A +A+TG+ GKTTT +ML L + Sbjct: 88 AAGQAGVPVWGDVELAWRLRGL----NGRKPAPWLAVTGTNGKTTTVQMLASILKAAGLR 143 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 A +G +IGV L L + + ++ + + +S ++ + L R H A + +AP H Sbjct: 144 TAAVG----NIGVSL-LDAVTGEQEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDH 196 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 L +E A+ K I+EG ++ D + +L++A G + I Sbjct: 197 LDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAI 246 >gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 483 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 32/246 (13%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR F AI+G DGH FI A+ GA ++V D+ + + V+D Sbjct: 29 DSRIKTNAGLFIAIEGFKTDGHQFIEAAIANGAKAILVQKDVEI---KEDVTIIKVEDTR 85 Query: 93 GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 A+ +A A + ++ +TG+ GKT+ +L L + K IG+ N IG Sbjct: 86 LAMALVANNAYGHPSKQFELVGVTGTNGKTSITFLLGQILEAYHKKIGIIGTIENRIGSQ 145 Query: 151 LTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 + A VD + E+ L R + + + T + Sbjct: 146 ILKAERTTPESLDLQALFKKMVESQVDTTLMEVSSHALALSRVAGSDFK--VGIFTNLTQ 203 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKS 253 HL +E A+AKA++F E T +N D + E++K + L ++ Sbjct: 204 DHLDFHQTMENYAAAKAKLFTMCE---TGIVNKDSDYINEIIKGATCNL-----VTYAID 255 Query: 254 KNADFQ 259 K+AD++ Sbjct: 256 KDADYK 261 >gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114] gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114] Length = 487 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 53/321 (16%) Query: 170 SHLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217 + LG RFL HL +P ++++T I H+ + G E + + L Sbjct: 166 ARLGSSRFLIAEADESDASFLHL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNL 224 Query: 218 EKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G + DD ELL S + + ++G S +AD +L ++Q +QS+ VQ Sbjct: 225 PFYGQAVMCVDDPVVRELLPQVS-----RQVITYGFSDDADVRLINYRQVGQQSFFTVQR 279 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----R 331 + ++ +++V + G H A N + + + + + + AL F EG G+R+ Sbjct: 280 KDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNF---EGAGRRFDQLGE 336 Query: 332 CALNQGFFTLIDESYNANPA----SMKAAISVLSQ------ISPHGEGRRIAVLGDMCEM 381 G L+D+ Y +P ++KAA + ++ PH R + D + Sbjct: 337 FETGNGSAMLVDD-YGHHPTEVDVTIKAARAGWAEKRLVMIFQPHRYSRTRDLYDDFANV 395 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFL 435 + ++D+ +L +Y+ ++G A AL R+I + T++ L Sbjct: 396 LD-----NVDVLIMLDVYSAGETPIAG----ADGRALCRTIRGRGKIDPVFVPTIEALPP 446 Query: 436 FIQSSLVDGDVVVVKSSNSCG 456 + + + +GD+++ + + G Sbjct: 447 VLANIIQEGDLILTQGAGDVG 467 >gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus saanensis SP1PR4] gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus saanensis SP1PR4] Length = 452 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 9/134 (6%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFEL 167 +++AITGS GKTTT ++ I + +IG+P+ + D + + E+ Sbjct: 109 SVVAITGSNGKTTTTSLI----GEILRGAGVPTLVGGNIGLPVVEMVAESTDTTWSVLEI 164 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L + P IAV+ I P HL E+ A AK I E + LN Sbjct: 165 SSFQLETVETFA----PKIAVVLNITPDHLDRHGTFEKYAEAKTRITEMQTPADFLVLNA 220 Query: 228 DDSFFELLKAKSHA 241 +D +++ AK+ A Sbjct: 221 EDKPTQMVAAKTKA 234 >gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] Length = 491 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 148/374 (39%), Gaps = 44/374 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87 I DSR + + F A+ G + DG FI AV+ GA +V + + V Sbjct: 26 IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVCLPGGAEAEAARAAGCTVVH 85 Query: 88 VDDVLGALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 DD AL +LA AR + + ++ +TG+ GKTT+ +L ++ +G+ Sbjct: 86 HDDPREALWRLA-EARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVS 144 Query: 143 --YNNHI-GVPLT----------LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + H PLT LA M VD + E+ L + R V A Sbjct: 145 YRWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCG--VPFAGAS 202 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSF-FELLKAKSHALGIKT 246 + + HL +E AK+ +F L + + +N DD + LL+ AL Sbjct: 203 FSNLTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRAL---- 258 Query: 247 IYSFGKSKNADFQLRKWKQC----SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG K Q W + ++ + + L G+ E+ +G A N+L + Sbjct: 259 --SFGLQKALPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQAL 316 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D ++ L FH GR +R A + +D ++ + A ++VL Sbjct: 317 ALELGLMPDD-LRHLEGFHGVCGRLERVPNA--RKLHVFVDYAHTPD-----ALVNVLKA 368 Query: 363 ISPHGEGRRIAVLG 376 + G R + V G Sbjct: 369 LRGAGFKRIVTVFG 382 >gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 502 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 154/394 (39%), Gaps = 37/394 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR I P F + G H DGHD+ A++ GA +V ++ S S ++ + Sbjct: 23 ITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIVAEREL--SGLSENVTLI 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L LA A + +I ITG+ GKTTT M+ L+ ++ IG+ Sbjct: 81 TVPDTRRILPILANAFYGDPTQRLKLIGITGTNGKTTTTHMVDKILNDARRKTGIIGTLY 140 Query: 145 NHIG--VPLTLARMPVDVDF-GIFELGMSHLGEIRFL---TH-----LVRP---HIAVIT 190 IG TL P + F +SH GE L +H VR V T Sbjct: 141 MKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSHALGIK 245 ++ HL +E + K +F L + LN DD ++ A Sbjct: 201 NLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLNADDDASSYYAKRTSA---- 256 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I ++G AD + E + S EV G H N L + + Sbjct: 257 QIITYGIQNQADVRATHIHHTREGCAFHAETPWGSSEVNLKVHGAHNIYNALAAMTTCLL 316 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ ++L F GR + + + F ++D Y NP +KA + I+ Sbjct: 317 EGIPLEEIRESLGQFAGVHGRFQEIQTG--RRFGVVVD--YAHNPDGLKATLQSAKAIT- 371 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 G+ I V+G C GE +S +A++ S Y Sbjct: 372 --SGKMICVMG--CR-GERDRSKRPIMADIASSY 400 >gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisA53] gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 467 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 81/339 (23%), Positives = 134/339 (39%), Gaps = 48/339 (14%) Query: 64 GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VVV+T + L IPV ++L L +L + +AI G+ Sbjct: 66 GADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGTH 116 Query: 118 GKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+ L + + I G N G T AR+ G E + E Sbjct: 117 GKTTTTSMVAALLDAGEFDPTVINGGIINAYG---TNARL------GAGEWMVVEADESD 167 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +A++T + P HL +F E + +A + E + G + D + L Sbjct: 168 GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCIDHPVVQALV 227 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIG 289 K + + I ++G++ AD +L K S +V + + H G Sbjct: 228 GK---IEDRRIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAHEIADLKLPMPG 284 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A N + + L DT KAL+ F G +R+ + ++ID+ Y + Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGDWNGVSIIDD-YGHH 340 Query: 350 P----ASMKAA-----ISVLSQISPHGEGRRIAVLGDMC 379 P A +KAA V++ + PH R ++ + C Sbjct: 341 PVEIAAVLKAARESTKTKVIAVVQPHRFTRLQSLFEEFC 379 >gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp. MP5ACTX8] gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp. MP5ACTX8] Length = 450 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 13/150 (8%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165 + ++ ITGS GKTTT T + I K +IG P+T L + + Sbjct: 106 QGEVVGITGSNGKTTT----TTLMGEIFKAAGRPTLVGGNIGKPVTELVGESTPEAWSVL 161 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ L + RP IA++ I P HL E A+AKA I E + L Sbjct: 162 EVSSFQLETVESF----RPRIAMVLNITPDHLDRHGNFENYAAAKARITEFQTAEDFLIL 217 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 N +D +++ AK+ A IY F + Sbjct: 218 NAEDKPTQMVAAKTKA----QIYWFSPRRQ 243 >gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis RP62A] gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis RP62A] Length = 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 107 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 161 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 218 Query: 223 IFLNY 227 + NY Sbjct: 219 LICNY 223 >gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter sp. K] gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter sp. K] Length = 462 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 43/272 (15%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--- 152 ++ +AAR I+ ITG+ GK+TT + L+ ++T+ ++G PL+ Sbjct: 99 GEVELAARFLDGLPIVGITGTNGKSTTTALTGALLARDRRTF-----VGGNLGTPLSELV 153 Query: 153 LARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 L+ P D + EL L I RF R +A + + P HL + ++ A+AKA Sbjct: 154 LSGEPADA--AVVELSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKA 206 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--------- 262 +F + N D + S A +++FG A R Sbjct: 207 RLFATQQPDDVAVANARDPRALAMAGASRA----DLHTFGFGAPAPASARDEGGEPGPEG 262 Query: 263 ---WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 W ++ QL+ +++ H+ A ++ ++ + V + A Sbjct: 263 TAIWFTPRGRAPERYQLRNRALRGRHN---RENAMAAVLCARLMGVPGEAVQAGLDAFPG 319 Query: 320 FHPK-----EGRGKRYRCALNQGFFTLIDESY 346 H + EGRG + +N T +D ++ Sbjct: 320 LHHRLELVAEGRGVEW---VNDSKATNVDSTF 348 >gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 101 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + S+P Sbjct: 22 DGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQGA----SLPQLV 77 Query: 88 VDDVLGALNKLAVAAR 103 V D AL +L R Sbjct: 78 VIDTRKALAQLGAMNR 93 >gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces lividans TK24] Length = 475 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%) Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + G +PV+G ++ L L R A +A+TG+ GKTTT +ML L + Sbjct: 92 AAGQAGVPVWGDVELAWRLRGL----NGRKPAPWLAVTGTNGKTTTVQMLASILKAAGLR 147 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 A +G +IGV L L + + ++ + + +S ++ + L R H A + +AP H Sbjct: 148 TAAVG----NIGVSL-LDAVTGEQEYDVLAVELSSY-QLHWAPSL-RAHSAAVLNLAPDH 200 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 L +E A+ K I+EG ++ D + +L++A G + I Sbjct: 201 LDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAI 250 >gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium tumefaciens str. C58] gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Agrobacterium tumefaciens str. C58] Length = 489 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 146/379 (38%), Gaps = 56/379 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR AP F A+ G DG ++ K A + +PV Sbjct: 27 IGGITADSRKAAPGSLFVAVAGTKADGAAYV-----KDAVAKGAVAVVSGHAVEADVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L+ A + T++A+TG+ GKT+ S +++ +A G Sbjct: 82 VVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVA-------SFVRQIWAFAGHAAAQ 134 Query: 147 IGVPLTLARMPVDVDFG-------------IFEL---GMSHLG--------EIRFL--TH 180 IG +A P D+G + EL G++H + R L H Sbjct: 135 IGTTGVIA--PGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVH 192 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFE--LLKA 237 L A T + H+ IE+ +AK +F+ L EK + DD + + + A Sbjct: 193 L---SAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAA 249 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L ++T+ G+ L++ + + +EV G EV G N L Sbjct: 250 REAGLEVRTVGRNGQY----LTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANAL 305 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + G+ TA+KAL GR + N G +D Y P +++ Sbjct: 306 VAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKN-GALAYVD--YAHKPDALE--- 359 Query: 358 SVLSQISPHGEGRRIAVLG 376 +VL+ + P GR I V G Sbjct: 360 NVLTSVRPFTSGRIITVFG 378 >gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium] Length = 450 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 25/269 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IA++GS GKTTT M+ L+ + I G N G ++L G + + Sbjct: 104 IAVSGSHGKTTTTAMMGALLTEAQYDPLIINGGIVNAFGSNVSLG-------LGSWCVVE 156 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + FL ++P I+VIT I H+ F E + A E G DD Sbjct: 157 GDESDGSFLN--MQPIISVITNIDLEHMEFFKTQESLEKAFQTFIENTSILGCTLACIDD 214 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGI 288 ++ K+ TI ++G+S+N+D +L + S+ V+ + K + + + Sbjct: 215 PLAAVVIKKTPH---HTIITYGESENSDIRLTALDKGITGSYFSVKTRRKEYKNLFLPMM 271 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLIDESY 346 G H N L +G L D DT + L F +G +R+ R +N F + Y Sbjct: 272 GKHNVLNSLAIVGAGEFLDLDEDTIRETLKNF---QGVQRRFTIRGTVNSAVFV---DDY 325 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P ++ I Q +G + +A++ Sbjct: 326 AHHPREIETVIKSAKQ---YGATKIVAIV 351 >gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosynechococcus elongatus BP-1] gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermosynechococcus elongatus BP-1] Length = 497 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 10/215 (4%) Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 FG+ E+ L + R + +A T + HL +E+ +AKA++F G Sbjct: 176 FGVMEVSSHALAQDRVWG--CQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLKG 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 LN DD F + L + L +++G SK+ADF+ S V S Sbjct: 234 RAILNGDDPFGQRL---AQQLPRDRYWTYGLSKDADFRAENLNYRSNGVTGAVHTPLGSG 290 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + +G N+L + + + + ++ + AL F GR ++ R Q + Sbjct: 291 TLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVV 350 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +D Y P S++ ++L P G+ I V G Sbjct: 351 VD--YAHTPDSLE---NLLRAARPFIPGKLICVFG 380 >gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] Length = 486 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 HDLL G I V+G+++DSR++ P + FFA+ G DG FI A+ GA Sbjct: 3 LHDLLGDAAGRDPEIAAVD-VSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAIAAGAI 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----T 122 V + +LS+P + + AL A R ATI A+TG+ GKT+ T Sbjct: 62 AVAGGSPPGT---ALSVPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTSVAAFT 118 Query: 123 KEML-----------TIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +++ T+ L S K+T Y + + + P+ L R +D I + G++ Sbjct: 119 RQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPD-----PIALHRQ-IDE---ITQDGVT 169 Query: 171 HL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-- 221 HL G ++ VR T ++ H+ + +AK +F L G Sbjct: 170 HLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGA 229 Query: 222 -TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 I +++ S + A++ L + T+ + G A +L +++Q G+ Sbjct: 230 AVISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRM 289 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + +G +N L+ G+ +D +AL +GR Sbjct: 290 YTIRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGR 335 >gi|222823643|ref|YP_002575217.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Campylobacter lari RM2100] gi|222538865|gb|ACM63966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Campylobacter lari RM2100] Length = 466 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 46/286 (16%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIF 165 K II IT S GKT+ K L L K Y S N +G+ + + + + I Sbjct: 149 KLKIILITASFGKTSIKNFLYEVLKDEFKCYKTPRSVNTFMGIVKDINENLENNTEIYIV 208 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK---- 219 E G +I +T + P I ++ I AHL F + I +AK + + LEK Sbjct: 209 EAGAREQNDILEITEFLNPQICIVGEIGLAHLEYFKTQDNIRNAKLQALKSKRLEKYFLH 268 Query: 220 TGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + T++ N YDD L ++ G+ DF++R L Sbjct: 269 SSTLYENEFYDDC---LSDVRASLEGL------------DFKIR--------------LD 299 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + +G A N+ + + + L ++ IK++S E R + +++ Sbjct: 300 DNIYDFHANLLGAFNAYNISVCILLAYYLGIKIEDIIKSISNLKAVEHRLQ----VISKE 355 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +ID+ +N N M + ++ +GR++ V + E+ E Sbjct: 356 PKFIIDDGFNGNFKGMSQS----YELCKSYQGRKVLVTPGIVEVNE 397 >gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius ED99] Length = 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A II ITG+ GKTT ++ + ++ G + +IG + V D Sbjct: 107 LISEAPIIGITGTNGKTTVTSLIGDMFNKSREN----GRLSGNIGFVASKVAQEVKTD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L RPHIA+IT + AHL +E +AK IFE ++ Sbjct: 161 --EYLVTELSSFQLLGIEHYRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDY 218 Query: 223 IFLN 226 + N Sbjct: 219 LIFN 222 >gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 438 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414 >gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia proteamaculans 568] gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia proteamaculans 568] Length = 439 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 56/366 (15%) Query: 15 QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQK-------- 63 QG + I+ G +D +R + P+ I P G D + +V++ Sbjct: 5 QGKKVVIIGLGLTGLSCVDFFMARGVTPRVMDTRISPP---GLDKLPESVERHLGDLNQD 61 Query: 64 ---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A L+V + M + +LS +++G + A +A I+AITGS GK+ Sbjct: 62 WLLAADLIVASPGMALATPALSAAADAGVEIVGDVELFCREA----QAPIVAITGSNGKS 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +T + + K +IG+P L+L R + + EL L E F Sbjct: 118 T----VTTLVGEMAKAAGWAVGVGGNIGLPALSLLRQ--ECQLYVLELSSFQL-ETTFSL 170 Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 H A I + H+ + G+++ +AK ++E E +N DD+ ++ Sbjct: 171 HAA---AATILNVTEDHMDRYPFGLQQYRAAKLRVYENAE---VCVVNADDALTMPVRGA 224 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294 K SFG + D+ L +Q E +W+ V+ L + M++ G H Sbjct: 225 D-----KRCISFG-ADVGDYHLN--RQLGE-TWLRVRGEKILNTREMKLT----GRHNYT 271 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L L + + +++KAL+ F G R++ A I++S N S + Sbjct: 272 NALAALALADAVNIPRASSLKALTTF---TGLAHRFQLAWEHNGVRWINDSKATNVGSTE 328 Query: 355 AAISVL 360 AA++ L Sbjct: 329 AALNGL 334 >gi|83312945|ref|YP_423209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Magnetospirillum magneticum AMB-1] gi|118595663|sp|Q2W0H5|MURD_MAGSA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|82947786|dbj|BAE52650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum magneticum AMB-1] Length = 457 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A ++A+TG+ GK+TT +L L A G+ L L +P D + + EL Sbjct: 110 ARMLAVTGTNGKSTTTTLLAHVLDECGLPVAAGGNLGT---AALDLPELPGDGRY-VLEL 165 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L LTH ++ +A++ + P HL G+ +AK +F+ L G + Sbjct: 166 SSYQL----ELTHSLKLGVAILLNVTPDHLGRHGGMAGYIAAKRRVFDFLTPGGAAVVGI 221 Query: 228 DDSFFELLKAKSHALGIKTI 247 DD + A+ GI+ + Sbjct: 222 DDGPCRAIVAELDRRGIRVV 241 >gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis W23144] gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis W23144] Length = 454 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A IIA+TG+ GKTT +T + + + G + +IG + V D Sbjct: 112 LISEAPIIAVTGTNGKTT----VTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSD-- 165 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ K Sbjct: 166 --EYLITELSSFQLLGIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDY 223 Query: 223 IFLNY 227 + NY Sbjct: 224 LICNY 228 >gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 514 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 141/377 (37%), Gaps = 64/377 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ + S+ + + F AIKG DGHDFI AV GA +V D V I Sbjct: 28 ISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIVE-DFVEE----DILQI 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143 V + AL K+A K + IT S GKT+T M G+ Y Sbjct: 83 KVKNSRIALAKVASIFFGEPSKKLKVTGITASNGKTSTAFMTKCIYDKAGYNTGISGTVY 142 Query: 144 NNHIGVPL-TLARMPVDVD-----FGIFELGMSHL--------GEIRFLTHLVRPHIAVI 189 + V + ++ P D + + G+ H+ GE+ + I Sbjct: 143 TKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELA-RAYATDFDIVTF 201 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--------------- 234 I P H+ N E K+ + + LN D FEL Sbjct: 202 NNITPEHIVNHGSFERYYHVKSRLIRHAKDDCVAILNSD---FELINDLRNNTKAQVVTY 258 Query: 235 -LKAKSHALGIKTI---YSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LK + I + FGK K N D +L+ + ++ +S +V Sbjct: 259 SLKNNLEDISIDNLDLSTGFGKFKFIVNRDIKLKG-----------ITIKKQSFDVELKV 307 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 GY N ++ + I + D+DT + + F G +R+ ++G F ++D+ + Sbjct: 308 AGYSSVMNAIVAITIGLVNGIDLDTILAGIQDF---TGVERRFEVIFDEG-FKIVDDHF- 362 Query: 348 ANPASMKAAISVLSQIS 364 AN +++ + LS++ Sbjct: 363 ANKNNIEVTLDTLSKMD 379 >gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum A str. ATCC 3502] gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium botulinum A str. ATCC 19397] gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium botulinum A str. Hall] gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum A str. ATCC 3502] gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum A str. ATCC 19397] gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum A str. Hall] Length = 458 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEVCDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 438 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414 >gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. B100] gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris] Length = 495 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 155/379 (40%), Gaps = 50/379 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIP 84 V+G+ +DSR++ P +AF AI G G F A+ GA ++ A + + +I Sbjct: 22 VSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILFEPPAPADLPVPADAIA 81 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V G+ LG L A ++ +I +TG+ GKT+T ++L AL+ + IG+ Sbjct: 82 VPGLRARLGVLADHFHGAPSQAM-RMIGVTGTNGKTSTVQLLAQALTLLGTPTGTIGT-- 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR----------FLTH--------LVRPHI 186 +GV L A +P + + L ++R +H V+ + Sbjct: 139 --LGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGRVDAVQFDV 196 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKAKSH 240 AV T + HL + + +AKA++F GL +N DD+F F L H Sbjct: 197 AVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRAA---VVNLDDAFGRTLFAALDPALH 253 Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG-IGYHMAQNML 297 A+G+ + G + A D QL + ++ L G++ V +G N+L Sbjct: 254 AIGVSSRAQAGATVQAQDLQL-------DHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLL 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 G + L + L P GR R A L+ Y P +++ A+ Sbjct: 307 AVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363 Query: 358 SVLSQISPHGEGRRIAVLG 376 + L H + R I V G Sbjct: 364 TSLRS---HAQDRLICVFG 379 >gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 438 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414 >gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus polymyxa E681] gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus polymyxa E681] Length = 473 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165 KA II ITGS GKTTT + L + G +IG P+ A + D + + Sbjct: 111 KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAG----NIGTPVCEAAVDAKSDEWMVV 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L + RP +A + +A HL G+E+ ++KA +F T + Sbjct: 167 ELSSFQLKGTKDF----RPTVACLLNVAETHLDYHGGMEDYVASKARLFANQTAADTAVV 222 Query: 226 NYDDSFFELL 235 N+DD L Sbjct: 223 NWDDPVCREL 232 >gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis TXDOH] Length = 465 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 151/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD+ + L K + +G + +A + + + V +G+ + VV + Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343 G H QN L + I + L DTAI +AL+ F+ R +RY A G +TLID Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADTAIQQALAEFNGVGRRFQRYGEIPAAGGGAYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + GDVV+ + Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] Length = 470 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 31/217 (14%) Query: 47 KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 + P G DF A GA + + + + PV V D G + A+AAR+ Sbjct: 8 RAPASTGADFAAQAASLGAVAALTDPAGAERVLAAGRPVLVVGDPRGRMG--ALAARIYG 65 Query: 107 KAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARM-PVDV 160 I ITG+ GKTTT ++ L + + IG+ IG L R P Sbjct: 66 NPGDGLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEAT 125 Query: 161 DF----------GIFELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 D G+ + M SH LG + + H +AV ++P H+ SG+E Sbjct: 126 DLQALFAVMRERGVDAVAMEVSSHALVLGRVDGVVH----DVAVFNNLSPEHMEFHSGME 181 Query: 205 EIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSH 240 + AKA++F + G + N DD++ L A++ Sbjct: 182 DYFQAKAQLFTRARSRRGVV--NRDDAYGRRLVAEAE 216 >gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM 14365] gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM 14365] Length = 472 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 75/367 (20%), Positives = 144/367 (39%), Gaps = 70/367 (19%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIG 141 IPV ++LG L ++ T +A+ GS GKTTT M+ ++ +++ A IG Sbjct: 90 IPVIPRAEMLGELMRMK---------TGLAVAGSHGKTTTTTMIASVLMAAGMDPTAVIG 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 N +G+ + +G E ++ E FLT + P AV+T + P HL + Sbjct: 141 GRVNALGL--------ANARWGKSEYLVAEADESDGSFLT--LAPTFAVVTNLDPEHLDH 190 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + ++ + A L G + D++ + + + K ++G + A ++ Sbjct: 191 YGSVDNLHRAFINFLNRLPFYGLAAVCLDNAGVQAILPQIQ----KRFVTYGMASQATYR 246 Query: 260 LRK------------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 R W++ E + + + G+ H N L L I L Sbjct: 247 ARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQ-----------HNVLNSLAVLAICDALD 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS--------- 358 + KAL F EG +R+ T++D+ + +PA +++ ++ Sbjct: 296 VPFEVTAKALQSF---EGIQRRFTVRGEVAGITVVDD-FGHHPAEVRSTLAGARSAFPSR 351 Query: 359 -VLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD 416 +++ PH R + E ++SF+ D + +++ + G AL Sbjct: 352 RIIAAFQPHRYTR------TRDQFQEFARSFYDADKVIITDVFSAGEAPIEGATAEALAK 405 Query: 417 ALPRSIH 423 A+ S H Sbjct: 406 AVSTSGH 412 >gi|159038774|ref|YP_001538027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora arenicola CNS-205] gi|157917609|gb|ABV99036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora arenicola CNS-205] Length = 448 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 44/358 (12%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A + +TGS GK+TT +++ L+++ + + +IGVP TL +P D + EL Sbjct: 111 ARTVGVTGSKGKSTTSSLISHLLAAVDRPNV----FGGNIGVP-TL-ELPA-ADLYVLEL 163 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 ++ P +AV+T + P HL G E K + G E TI +N Sbjct: 164 SSYQCSDL-----TDSPRVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE---TIVVN 215 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + LG + + G W + Q V Sbjct: 216 GADPRL------AAELGDRPVVRAGTPDTTYVA----GGPDGTPWFHLGDQPLFPRAVLP 265 Query: 287 GIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G H N+ + L ++ +L DV DT A++ F +G R ++ T + Sbjct: 266 LVGRHNEGNLCVALSVLDVLGVDVRARRDTVAVAVAEF---QGLAHRLTEIVDPSGLTFV 322 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++ +P + AI +GR + V+ + G LAE + Sbjct: 323 DDTLATSPYAAMHAIDAY-------DGRALTVIVGGADRGLDYTPLREHLAE--REITVI 373 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSSNSCGFYR 459 V SG ++A D LP+ + ++ + G + G VV++ ++ S G +R Sbjct: 374 GVPDSGSRIVAALDGLPK-VRCEVTDDLVGAVRLARRVTPAGGVVLLSPAAPSYGRFR 430 >gi|242374030|ref|ZP_04819604.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis M23864:W1] gi|242348281|gb|EES39883.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis M23864:W1] Length = 437 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 DQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F IE++ A ++ ++K I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIEDVYDAFQDMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD + L+ IY +G ++ D + + + + +V + G+ + Sbjct: 201 IAWGDDDYLRKLEVDV------PIYYYGFKESDDIYAKNIQITEKGTQFDVYINGEYYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + D++ +AL F + R + + NQ L+ Sbjct: 255 FLSPQFGDHNILNTLSVIAISYLEKMDIENIKEALETFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + LS++ + L Sbjct: 311 DD-YAHHPREISATIESARKKYPNKEVVAVFQPHTFSRTQAFLDEFA--SSLSKADQVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|219685663|ref|ZP_03540477.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04] gi|219672779|gb|EED29804.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04] Length = 468 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 23/183 (12%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139 L+IP+ +VLG L++ K I I GS GKTTT L I + Sbjct: 96 LNIPILSYPEVLGELSR---------KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVI 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197 +GS G T+A GI ++ + E + H + P++ ++T + H+ Sbjct: 147 VGSSVKDFGDNSTIA--------GISDIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F E + A + L+K G + +N DD +K+K + I I+SFG ++ Sbjct: 197 DFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSKINREDI-NIFSFGSRDLSN 255 Query: 258 FQL 260 FQ+ Sbjct: 256 FQI 258 >gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7424] gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424] Length = 496 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 11/194 (5%) Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV T + HL +E+ +AKA +F TG +N DD + + L ++L Sbjct: 201 EVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPDYLTGRAIINLDDPYGQRL---INSLSG 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG--IGYHMAQNMLMTLGI 302 + ++S+ + N D E + + L EV + +G + N+L +G Sbjct: 258 EKVWSYSVN-NPDANFYTKDLTYEANGVSGILHTPIGEVNFYSPLVGQYNIANLLAAVGA 316 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L D+ + +++L +F GR +R + + Q ++D Y P S++ ++L Sbjct: 317 VVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDISVIVD--YAHTPDSLE---NLLKA 371 Query: 363 ISPHGEGRRIAVLG 376 P EG+ I V G Sbjct: 372 ARPFIEGKMICVFG 385 >gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens GS-15] gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens GS-15] Length = 461 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 42/262 (16%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT M+ AL+ I T IG N +G L + G F + Sbjct: 108 IAIAGTHGKTTTTSMVATALTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P IAV+T I HL ++ GIE+I + + G L Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 +D + E+L K ++G S AD + ++L+G + V H Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261 Query: 287 GIGYHM---------AQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 GY M A N+L L +++ + DV A + F G G+R++ Sbjct: 262 YKGYRMGEVSFAMPGAHNVLNALACIAVAMELDVPFA-QIQEGFAKFGGVGRRFQVKGEV 320 Query: 337 GFFTLIDESYNANPASMKAAIS 358 T++D+ Y +PA ++A ++ Sbjct: 321 NGITVVDD-YGHHPAEIRATLA 341 >gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster bacterium] Length = 495 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 53/365 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +NG+ +++ + + F A++G G + I A++KG V+V++ + +IPV Sbjct: 52 INGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEKGCVAVLVDSHDL----ECAIPVI 107 Query: 87 GVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 ++++ L LA A + +K +I +TG+ GKT+ ++ LS + IG+ Sbjct: 108 RIENLKQYLPALASAYYSQATKVEVIGVTGTNGKTSVGYFISQMLSELGIKNGFIGT--- 164 Query: 146 HIGVP---LTLARMPVDVDFGIFE-LGMSHLGEIRFLTHLVRPH-------------IAV 188 +G+ + A D+ F +++ L HL I V H A+ Sbjct: 165 -LGISNSDVASANTTPDI-FTLYKALHQYHLDNINTAVLEVSSHGLDQNRVAGLNFKQAI 222 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-LLKAKSHALGIKTI 247 T + HL ++E K ++F + ++ +N DD++ + L A Sbjct: 223 FTNLTQDHLDYHQTLDEYRQVKLKLF-SFDSIQSVIINQDDAYHQDFLDA---------- 271 Query: 248 YSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S GK K + ++ +++ + EQ ++ QL E+ +G N+L V Sbjct: 272 -SKGK-KQTTYSIKDFEKITINEQGFL-CQLDNFVFEIPL--LGKFNLSNVLAAFNSVEQ 326 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + I LS P GR ++ + AL +D Y P ++ AI+ L + P Sbjct: 327 LGFSREGIIPLLSRLFPPLGRMQKIKKAL-----AWVD--YAHTPDALANAITTLKEHHP 379 Query: 366 HGEGR 370 + R Sbjct: 380 EHKIR 384 >gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 541 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPV 85 V ++ DSR P F A+ G DGHDF+ AV++G +V+ + + + + Sbjct: 27 VTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVVLCQPGCRLPTEKAPEVLH 86 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D A +L A R + +I ITG+ GKTT +L + IG+ Sbjct: 87 LATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYLLEDLIRRAGGEPGVIGTV 146 Query: 144 N 144 N Sbjct: 147 N 147 >gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 484 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 155/387 (40%), Gaps = 38/387 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V + DSR F A++G H DGH F+ A+++G L++V + + + Sbjct: 24 VTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQGCTLIMV--EEMPEKKHEDVTYM 81 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL A + ++ +TG+ GKTT +L +++ + + Sbjct: 82 MVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQ 141 Query: 145 NHIG---VPLT-----------LARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 N IG +P T L R VD D+ E+ + + R +R + Sbjct: 142 NQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFMEVSSHAVVQQRIAG--LRFAGGI 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + I HL + AK + F+ L++ N D+ ++ + A Sbjct: 200 FSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNGDEKNGSVMLQNTFAHK----K 255 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++G ADF+ + + S M + ++G EV +G A N+L G +L Sbjct: 256 TYGLKGVADFKAKIIE--SHFDGMLLNIEGH--EVWVKLVGEFNAYNILAVYGAAILLEQ 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + ALS EGR + G ++D Y P ++ +S ++ + E Sbjct: 312 ETVKVLTALSQITGAEGRFEAITS--KNGVIGIVD--YAHTPDAVANVLSTINNLRKK-E 366 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEV 395 + I VLG C G+ ++ ++AEV Sbjct: 367 QQIITVLG--C-GGDRDKTKRPEMAEV 390 >gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius HKU10-03] Length = 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A II ITG+ GKTT ++ + ++ G + +IG + V D Sbjct: 107 LISEAPIIGITGTNGKTTVTSLIGDMFNKSREN----GRLSGNIGFVASKVAQEVKTD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L RPHIA+IT + AHL +E +AK IFE ++ Sbjct: 161 --EYLVTELSSFQLLGIEHYRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDY 218 Query: 223 IFLN 226 + N Sbjct: 219 LIFN 222 >gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] Length = 493 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 84/368 (22%), Positives = 151/368 (41%), Gaps = 38/368 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N IS +S+ I F KG +D H+ + ++GA + VV ++ P Sbjct: 26 NYISSNSKDIQENTLFICRKGTSFDSHNIVDDLYKEGANVFVVEREI------RKYPYIQ 79 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D A + +A ++ K +TG+ GKTT+ + + + + G+ N Sbjct: 80 VVDSRIAESIIASMFYSKPYEKLITFGVTGTNGKTTSVHLFHHIMHNFGIKGSISGTVVN 139 Query: 146 HI---------GVPLT---LARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPHIAVI 189 I P + M ++ G GM SH L + R + +R I I Sbjct: 140 DIMGDKFYHPNTTPSAIEIMRNMHKTLENGGKYYGMEVSSHALSQYRVES--IRYDIVGI 197 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-AKSHALGIKTIY 248 T I HL E AK I L+ G +N+ ELL+ K+ IK + Sbjct: 198 TNITRDHLDFHETFENYKKAKFHILNLLKPNGIAVVNH-----ELLQEVKNKNKNIKLV- 251 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 SFG ++D+ + + ++ ++ +V IG + A N+ + + ++ + Sbjct: 252 SFGVDSSSDYVIHEITTNWSGTFFKLDTPYGEKKVASQLIGEYNAFNITLVVAALAEIGY 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D+D I +++ F +GR + A G ++D + P +++ I L +++ + Sbjct: 312 DIDEVIASVATFRGVDGRFEIIPEAKKLGIEIVVD--FAHTPDALEKVILSLRKLT---K 366 Query: 369 GRRIAVLG 376 GR I V G Sbjct: 367 GRLITVFG 374 >gi|49483980|ref|YP_041204.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425853|ref|ZP_05602277.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428520|ref|ZP_05604918.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431153|ref|ZP_05607530.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433835|ref|ZP_05610193.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus E1410] gi|257436752|ref|ZP_05612796.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus M876] gi|282904309|ref|ZP_06312197.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906134|ref|ZP_06313989.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909051|ref|ZP_06316869.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911365|ref|ZP_06319167.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914534|ref|ZP_06322320.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282919502|ref|ZP_06327237.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282924880|ref|ZP_06332546.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|283958488|ref|ZP_06375939.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503612|ref|ZP_06667459.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293537169|ref|ZP_06671849.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|295428310|ref|ZP_06820939.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56749227|sp|Q6GFW8|MURC_STAAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|49242109|emb|CAG40809.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271547|gb|EEV03693.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275361|gb|EEV06848.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278101|gb|EEV08749.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281928|gb|EEV12065.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284103|gb|EEV14226.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus M876] gi|282313246|gb|EFB43642.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282317312|gb|EFB47686.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321715|gb|EFB52040.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282325060|gb|EFB55370.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327315|gb|EFB57610.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331426|gb|EFB60940.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595927|gb|EFC00891.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|283790637|gb|EFC29454.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920014|gb|EFD97082.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095278|gb|EFE25543.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|295127710|gb|EFG57347.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315195646|gb|EFU26033.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 437 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G ++ D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|297590727|ref|ZP_06949365.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|297575613|gb|EFH94329.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437804|gb|ADQ76875.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 444 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 89 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G ++ D Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 235 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378 >gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 431 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D + ++ + A+ I+AITG+ GKTT ++ L+ + K+YA +IG Sbjct: 72 DKNIKIISDIEFASYFYKTKDIVAITGTNGKTTITTLVNEILNKVGKSYAV-----GNIG 126 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 V + + + D F + E L I PH+AVIT I HL +E Sbjct: 127 VGV-MDVIDYDPKFIVCEASSFQLAYIDKF----HPHVAVITNITSDHLDWHKTVENYRK 181 Query: 209 AKAEIFEGLEKTGTIFL 225 AK I++ LE+ + L Sbjct: 182 AKENIYKNLEEDDFLIL 198 >gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] Length = 498 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 40/323 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V +++DSR P F A++G DGH +I A+Q+GA + + I + + P Sbjct: 29 VTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETAIQQGATAI-----LCEEIPAETNPDV 83 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + + + A + K +I +TG+ GKT+ +L ++ + Sbjct: 84 AYIRVQNSARTMGLVAANFYDQPSQKLKLIGVTGTNGKTSVATLLFRLFRALGYRCGLLS 143 Query: 142 SYNNHIG---VPLTLARMPVDVDFGIFELGMSHLGEIRFL---TH-LVRPHIA------- 187 + N I +P T V + ++H F+ +H +V+ IA Sbjct: 144 TVQNQIDDDVIPATHTTPDVITTNQLLTKMLAHGCTHVFMEVSSHAVVQERIAGLSFVGG 203 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALG 243 + T I HL + AK F+ L + N DD + A+ Sbjct: 204 IFTNITHDHLDFHGTFDNYIRAKKGFFDQLPASAFALTNVDDKRGLVMLQNTVARKETYS 263 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++T+ SF AD S + + EV IG A N+L G Sbjct: 264 LQTLASFKGKILAD------------SLFGLNMLIDEREVWFKLIGQFNAYNLLSVYGTA 311 Query: 304 SILTADVDTAIKALSVFHPKEGR 326 +L D + LS P GR Sbjct: 312 ILLGEDPTEVLTMLSGITPPPGR 334 >gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens W5455] gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens W5455] Length = 476 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 20/269 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I + G+ GKTTT +++ L I V L + + G+ E ++ Sbjct: 116 IGVAGTHGKTTTTSLISYILEQ--------ADMQPTIAVGGELCDIGCNAKLGMGEYMVA 167 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L E P +V+T + H++ + ++ + A ++ G +FL +D+ Sbjct: 168 ELDESDESFEYFHPLYSVVTNVDWDHVNQYPDLQAVIDAFGRFLRNTKEGGKLFLCGEDA 227 Query: 231 -FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGI 288 ++++A + L + +Y FG+ + DF + C +G+ M + I Sbjct: 228 GVKKVIEALPNDLKNR-MYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVI 286 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESY 346 G H + L G+ L D KA+ +FH + R + R C N L+ + Y Sbjct: 287 SGEHNVLDSLAACGVAHELGVSFDIVQKAMRMFHGAKRRLQLRAMCPDN----ILVYDDY 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P ++A ++ + + P RRI ++ Sbjct: 343 GHHPREIEATLNAVRLMYPD---RRILLI 368 >gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas subvibrioides ATCC 15264] Length = 492 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 11/149 (7%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV G D L A A+ A R K ++AITG+ GK+TT ++ L T G Sbjct: 94 VPVIG-DIELFARALAAIPADARPK--VVAITGTNGKSTTTALIGWVLKQAGLTVHIGG- 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 N IGV L L+ D + + E+ L LT P +A++T I+P HL G Sbjct: 150 -NIGIGV-LALSAPTPDAVY-VVEVSSYQLD----LTTSFAPDVAILTNISPDHLDRHGG 202 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +E +AKA +F+ + + DD + Sbjct: 203 MEGYVAAKARLFQVMSPEKVALIGVDDDW 231 >gi|254362463|ref|ZP_04978571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica PHL213] gi|261493188|ref|ZP_05989717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496956|ref|ZP_05993323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094055|gb|EDN74967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica PHL213] gi|261307392|gb|EEY08728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311151|gb|EEY12325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 433 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 +KA IIAITGS GK+T + T+ K+ +G N IGVP+ L+ + D D + Sbjct: 103 EAKAPIIAITGSNGKST---VTTLTTEMAKQAGIKVGMGGN-IGVPV-LSLLEGDYDLFV 157 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T+ ++ A + I+ H+ + I + AK I++ E I Sbjct: 158 LELSSFQLE----TTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAE---NII 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +N +D+ ++A +K + F + +NA++ LR Sbjct: 211 VNGEDAQTYPIQA------VKKVIRFAE-QNAEYSLR 240 >gi|167465174|ref|ZP_02330263.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 342 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/318 (21%), Positives = 129/318 (40%), Gaps = 32/318 (10%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 + + H +G D ++++ L N ++VA+ + +IP+ L++ + A Sbjct: 54 YLGHEASHVEGADLVVYST----ALPKDNVEIVAA-EARNIPI---------LHRSQMLA 99 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 RL ++ IA+ G+ GKTTT M+ + + C IG + Sbjct: 100 RLMNERKGIAVAGAHGKTTTSSMIALVMEK------CGADPTYIIGGEIMNIGSNAKAGT 153 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221 G + + + + FL + P +A++ I HL N+ G E + A A+ ++ G Sbjct: 154 GEYVVAEADESDGTFLQYY--PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGG 211 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + DD++ + + + ++G +AD+Q + V +G+++ Sbjct: 212 KAIVCKDDAYIREMIPYVES----EVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENL 267 Query: 282 EVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + G H N L TL I D A+ FH G +R++ Sbjct: 268 GKIELSVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFH---GAKRRFQVMGEINDIL 324 Query: 341 LIDESYNANPASMKAAIS 358 +ID+ Y +P + A IS Sbjct: 325 IIDD-YAHHPTEISATIS 341 >gi|283471006|emb|CAQ50217.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus ST398] Length = 437 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G ++ D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKESDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces viridochromogenes DSM 40736] Length = 475 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 18/171 (10%) Query: 84 PVFGVDDVLGA--LNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 P+F D G + +A RLR A +A+TG+ GKTTT +ML L++ A Sbjct: 88 PLFAAADRAGVPVWGDVELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAA 147 Query: 140 IGSYNNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 +G +IGV L L P DV EL L +R H A + +AP H Sbjct: 148 VG----NIGVSLLDAVLGEEPYDV--LAVELSSYQL----HWAPSLRAHSAAVLNLAPDH 197 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 L +E A+ K I+EG + ++ D + +L++ G + I Sbjct: 198 LDWHGSMEAYAADKGRIYEG-NRVACVYNVADKATEDLVREADVEEGCRAI 247 >gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] Length = 477 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 9/149 (6%) Query: 22 VPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +P + GI+ D+R+ + F IKG +DGHD + KG VV D+ Sbjct: 15 LPDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDKGCAAVVCERDL-----G 69 Query: 81 LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L + V D A L A + +I +TG+ GKTT ++ LS Sbjct: 70 LERQII-VTDTRAAFPMLCSAWFGHPERELELIGVTGTNGKTTITTVIKKVLSGFGFKVG 128 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 IG+ N IG + + +FEL Sbjct: 129 LIGTCQNEIGDKIIPTARTTPEPYDLFEL 157 >gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis H44/76] Length = 506 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 147/367 (40%), Gaps = 44/367 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 146 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 197 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 198 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 256 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 312 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 368 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ + E R VL ++ D +VL+ Sbjct: 369 TALLVDDYGHHPVEMAATLAAARGA--YLEKR--LVLAFQPHRYTRTRDLFEDFTKVLNT 424 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G +A D AL R+I V Y E + L + + L DGD+V Sbjct: 425 VDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIV 484 Query: 448 VVKSSNS 454 + + S Sbjct: 485 LNMGAGS 491 >gi|239637938|ref|ZP_04678899.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri L37603] gi|239596501|gb|EEQ79037.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus warneri L37603] Length = 437 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F ++++ A E+ ++K I Sbjct: 150 E-----ACEYRRHFLSY--DPDYAIMTNIDFDHPDYFKDVDDVFDAFQEMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-E 282 DD L+A IY +G ++ D + + + S +V + G+ + Sbjct: 201 IAWGDDEHLRKLEADV------PIYYYGFNETDDVYAKNIQITEQGSQFDVYINGEFYGQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + +VD +AL F + R + + NQ L+ Sbjct: 255 FLSPQYGDHNILNTLAVVTISYLEKMNVDNIKEALETFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + LS + H+ L Sbjct: 311 DD-YAHHPREINATIETARKKYPQKEVIAVFQPHTFSRTQAFLEEFAT--SLSAADHVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] Length = 511 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 F +L+ A + H P+ N +S DSR++ FF KG +D ++ A Sbjct: 18 FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73 Query: 63 KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117 +GA + + D A + + +P V D+ A+ ++ A T+I TG+ Sbjct: 74 QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133 Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161 GKTT T+ ++ AL + + I + H+ P L L RM VD Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219 + +S + + I V I+P H+S E+ + K+EI + Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261 + +N + S ++ L K+H LG K + SFG ++ AD+Q R Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292 >gi|94989796|ref|YP_597896.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS10270] gi|166224738|sp|Q1JIH1|MURC_STRPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|94543304|gb|ABF33352.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS10270] Length = 442 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 81/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G K DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEKGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella pneumophila str. Lens] gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella pneumophila str. Lens] Length = 447 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 102/436 (23%), Positives = 178/436 (40%), Gaps = 51/436 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88 + D+R AP A F + P D ++ Q ++ TD++ S G +L PV Sbjct: 30 VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLES 84 Query: 89 DDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 GAL + AR S A +IAITG+ GK+T +T + + K + + Sbjct: 85 ARQAGALIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG P L + D + EL L LT+ + P +A I + P HL +E Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AK I+ G + + N +D + + +S IK I SFGK + + W Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGL 246 Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +++ ME L +S+ + G H N L + + + L Sbjct: 247 IEQENTIYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F R + R G+ I++S N + A IS ++ I +G+ + + G Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + + + LA+ +S + + + L G ++ AL + + V + +++G ++ Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410 Query: 440 SLVDGDVVVVKSSNSC 455 GDVV++ S +C Sbjct: 411 CAKPGDVVLL--SPAC 424 >gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis alaskensis RB2256] gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis alaskensis RB2256] Length = 434 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 49/252 (19%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V+G + A A ++ ITG+ GK+T ++ L S G +IG+P Sbjct: 93 VIGDIELFAEARSELPPHKVVGITGTNGKSTVTALIAHMLESAGVPVLMGG----NIGLP 148 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + L R P+ + G++ L +S +I L H + +AV+T I+P HL + G E ++K Sbjct: 149 I-LTREPLP-EAGVYVLELSSF-QID-LAHSLACDVAVLTNISPDHLDRYDGFEGYVASK 204 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKS----HALGIKTIYSFGKSKNADFQLRKWKQC 266 A +F + + DD +++ ++ H + K I +++ Sbjct: 205 ARLFSLQHRDQVAIIATDDDPSKMIASRVNHRLHRVSAKDIDPVDQAR------------ 252 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP---- 322 W +Q G H AQN + + +L D + + L+ F Sbjct: 253 ----WPALQ-------------GPHNAQNAVCAIAACRVLGLDDEAIERGLATFRSLPHR 295 Query: 323 ----KEGRGKRY 330 E RG R+ Sbjct: 296 MELVGEARGARW 307 >gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] Length = 481 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 84/378 (22%), Positives = 152/378 (40%), Gaps = 55/378 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + DSR + + F A KG + DGH ++ A+ GA ++ + + I Sbjct: 17 VNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC--EGFSFDRKEGITYI 74 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEML----TIA------LSSIK 134 V D AL +A +K ++ +TG+ GKTT +L T A LS++K Sbjct: 75 RVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAGYKVGLLSTVK 134 Query: 135 -----KTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 K Y + + + + L M V++ E+ + + R T ++ + Sbjct: 135 ILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKR--TEGLQFSGGI 192 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGI 244 T ++ HL E + K + F+ L K+ N DD + KAK ++ + Sbjct: 193 FTNLSHDHLDYHKDFAEYRNVKKKFFDDLPKSAFALTNIDDKNGNYMLQNTKAKKYSYAL 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMT 299 KT+ ADF+ + +E QL G + EV IG N+ Sbjct: 253 KTL--------ADFKAK---------ILEKQLSGTLISIDNTEVWTKLIGVFNIYNLTAI 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAIS 358 + +L + + L++ E R+ +++ G ++D Y P ++K + Sbjct: 296 IATAELLGLE---KLDILTIVSQLESVNGRFEYVVSEDGVTAIVD--YAHTPDALKNVLE 350 Query: 359 VLSQISPHGEGRRIAVLG 376 ++ I + E + I V+G Sbjct: 351 TINDIRTNNE-KVITVVG 367 >gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC 23344] gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse 4] gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1] gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC 10229] gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC 10247] gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20] gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC 10399] gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH] gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU] gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei 2002721280] gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC 23344] gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1] gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC 10229] gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC 10247] gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH] gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU] gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei 2002721280] gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC 10399] gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse 4] gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20] Length = 465 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGMGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD+ + L K + +G + +A + + + V+ +G+ + VV + Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343 G H QN L + I + L D AI +AL+ F+ R +RY A G +TLID Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + DGDVV+ + Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 513 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 83/385 (21%), Positives = 156/385 (40%), Gaps = 56/385 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 + +S+DSR + AF A+KG DG+ +I + + KG L++ +D + S++ P Sbjct: 23 IESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGTKLIL--SDKLPRQSSIATPSV 80 Query: 85 -------VFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +F V+++ L+ LA + II ITG+ GKT+ + + + Sbjct: 81 AEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTNGKTSISSYIAQLQKLLDQK 140 Query: 137 YACIGSYNNHIGVPLTLA-RMPVDV--------DFG-----IFELGMSHLGEIRFLTHLV 182 +G+ N I L + +D+ D+ + E+ L + R T + Sbjct: 141 SLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQNLVMEVSSHSLDQKR--TEGL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-- 240 IAV + ++ HL ++ AKA++F+ + +N DD + + L ++ Sbjct: 199 DFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ-FKNLKKAVINIDDEYGQKLWENTNKS 257 Query: 241 ---------------ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 I+ I KSK AD + + Q+ ++ + K + Sbjct: 258 SFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSIENMQTSFDLYISQKHIGTYQ 317 Query: 286 HGIGYHMAQNMLMTLGIVSILTADV---DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + + + LM LG+ D D ++ +S P +GR + AL G +I Sbjct: 318 TSL---VGEFNLMNLGLSLAALDDSSTRDQLLENISKLKPVKGRME--VIALVNGAKIII 372 Query: 343 DESYNANPASMKAAISVLSQISPHG 367 D Y P +++ A+ L P+ Sbjct: 373 D--YAHTPDALEKALQTLVNYHPNN 395 >gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii M21/2] gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii M21/2] Length = 467 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+A+TGS GKTTT + I K Y G H+G + A +P+ + ++ + Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVSPEDVAV 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P+IAV+T + P HL + ++E +AK I ++ L Y++ Sbjct: 173 VELSSFQLISMHASPNIAVVTNVTPNHLDHHKDMQEYINAKRNILLYQKQPCRAVLGYEN 232 Query: 230 SFFELLKA 237 ++A Sbjct: 233 EISRSMQA 240 >gi|56964532|ref|YP_176263.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16] gi|59798127|sp|Q5WEA8|MURC_BACSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56910775|dbj|BAD65302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16] Length = 435 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 44/301 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T IA++GS GKT+T +L L S++ T IG + + + +FE Sbjct: 102 TSIAVSGSHGKTSTTGLLAHVLGSVEPTSYLIGD---------GTGKGAANSTYFVFEA- 151 Query: 169 MSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H + P V+T I H F +E++ SA + + + K I Sbjct: 152 ------CEYRRHFLNYSPDYCVMTNIDFDHPDYFKSVEDVVSAFQTMAKQVNK--AIIAC 203 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + L+A + +Y +G + DFQ + K E + + ++G V Sbjct: 204 GDDEHLQTLQAN-----VPIVY-YGLGDHNDFQAKSIKNTPEGTAFDAWVRGDLFGSFVI 257 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G G H +N L + + + ++ L F + R R G LID+ Sbjct: 258 PGFGDHNVKNALSVIALCHYEGIGYEDIVEHLKTFAGVKRRFSEKRS----GKQILIDD- 312 Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P + A I + PH R L + E LSQ+ H+ L ++ Sbjct: 313 YAHHPTEIAATIEATKKKYHDREVTAIFQPHTFTRTKTFLNEFAEA--LSQADHVYLCDI 370 Query: 396 L 396 Sbjct: 371 F 371 >gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisB5] gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 467 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 121/299 (40%), Gaps = 36/299 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156 LA RL+S IAI G+ GKTTT M+ L + I G N G T AR+ Sbjct: 100 LAELMRLKS---CIAIAGTHGKTTTTSMVAALLDAGDVDPTVINGGIINAYG---TNARL 153 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ + E S + FL + +AV+T + P HL +F + + A E Sbjct: 154 GAG-DWMVVEADES---DGTFLK--LPADVAVVTNVDPEHLDHFKTFDAVQDAFRIFVEN 207 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + D + L K + + I ++G++ AD +L K S +V Sbjct: 208 VPFYGFAVMCIDHPVVQALVGK---IEDRRIITYGENPQADARLLDLKPSGAGSTFKVAF 264 Query: 277 QGKSMEVVHHGI-------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + H G H A N + + + L DT KAL+ F G +R Sbjct: 265 RDRKAGTAHEITDLMLPMPGPHNALNAVAAIAVAHELGLSDDTIRKALAAFG---GVRRR 321 Query: 330 YRCALNQGFFTLIDESYNANP----ASMKAA-----ISVLSQISPHGEGRRIAVLGDMC 379 + T+ID+ Y +P A +KAA V++ + PH R ++ + C Sbjct: 322 FTKTGEWNGVTIIDD-YGHHPVEIAAVLKAARQSTSAKVIAVVQPHRFTRLQSLFEEFC 379 >gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Bifidobacterium bifidum PRL2010] gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium bifidum PRL2010] Length = 476 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 +AR A + ITG+ GKT+T EM + L + +G +IG ++ A + D Sbjct: 94 SARTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG----NIGKAVSHAAVDPDN 149 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D EL L T + A IT IA HL GIE A+ K+++F + + Sbjct: 150 DALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRR- 204 Query: 221 GTIFLNYDDSFFELLKAKSH-ALGIKTI 247 + N DD L + +H A G + I Sbjct: 205 -ALVFNADDRRVSALASAAHTAEGCRRI 231 >gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus halophilus Nc4] gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus halophilus Nc4] Length = 452 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 20/160 (12%) Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFG 163 ++A +IAITGS GK+T ++ +A + KK + ++G+P L L PV D Sbjct: 111 AQAPVIAITGSNGKSTVTVLVEAMARQAGKKVLS-----GGNLGLPALELLEKPVP-DLY 164 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + EL L L + A I I+P H+ + +E AK ++ G TG + Sbjct: 165 VLELSSFQLETTSTLNAVA----ACILNISPDHMDRYPNLEAYVQAKGRVYHG---TGAM 217 Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +N DD L + + H L ++ G ++ LR+ Sbjct: 218 VINADDVQVAGLAQPERHCL----RFTLGAPAADEYGLRE 253 >gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium bifidum NCIMB 41171] Length = 476 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 +AR A + ITG+ GKT+T EM + L + +G +IG ++ A + D Sbjct: 94 SARTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVG----NIGKAVSHAAVDPDN 149 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D EL L T + A IT IA HL GIE A+ K+++F + + Sbjct: 150 DALCVELSSFQL----HFTDSLALDCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRR- 204 Query: 221 GTIFLNYDDSFFELLKAKSH-ALGIKTI 247 + N DD L + +H A G + I Sbjct: 205 -ALVFNADDRRVSALASAAHTAEGCRRI 231 >gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetospirillum magneticum AMB-1] gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magneticum AMB-1] Length = 478 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 152/369 (41%), Gaps = 32/369 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR++ P F A+ G DG FI A+ GA V+ S L V Sbjct: 12 ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAAGAVAVLAPE---GSRPDLPPEVV 68 Query: 87 GVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 V D + A+ A + A+TG+ GKT+T E ++ + A IG+ Sbjct: 69 LVTDA-NPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAAAAIGTL 127 Query: 143 ------YNNHIGVPLTLARMPVDVDFG-IFELGMSHL-------GEIRFLTHLVRPHIAV 188 ++N G+ T + D + E+G++H G + VR A Sbjct: 128 GITAPGWDNQGGL-TTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVRLMAAA 186 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL + + A AK +F E L + T +N D GI T+ Sbjct: 187 FTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI-TV 245 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 FG++ D +L + + + +++++ G+++ + G A N L LG+ Sbjct: 246 LGFGRTAR-DLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACG 304 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 AD A++AL GR ++ N G +D Y P +++ +VL + PH Sbjct: 305 ADPVAALEALGHLDGVPGRLQQVASRAN-GAPIYVD--YAHTPDALE---TVLKALRPHA 358 Query: 368 EGRRIAVLG 376 R +AV G Sbjct: 359 ARRLVAVFG 367 >gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces avermitilis MA-4680] gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase [Streptomyces avermitilis MA-4680] Length = 467 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + A+ +PV+G + +A RLR A +A+TG+ GKTTT +ML L+ Sbjct: 84 LFAAAAEAGVPVWG---------DVELAWRLRGPGSAPWLAVTGTNGKTTTVQMLASILT 134 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + A +G +IGV L A + + + + + +S ++ + L R H A + Sbjct: 135 AAGLRTAAVG----NIGVSLLDAVLGEET-YDVLAVELSSY-QLHWAPSL-RAHSATVLN 187 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 IAP HL +E + K I+EG + ++ D + +L++A G + + Sbjct: 188 IAPDHLDWHGSMEAYTADKGRIYEG-NRVACVYNVADKATEDLVRAADVEEGCRAV 242 >gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens Rf4] gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens Rf4] Length = 458 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 83/337 (24%), Positives = 134/337 (39%), Gaps = 50/337 (14%) Query: 53 GHDFILHAVQKGAGLVVV---------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 G FI HA + A + VV N ++V ++ L IPV ++L L ++ Sbjct: 51 GEIFIGHARENVANVDVVVISSAVHDDNPEVVEAMERL-IPVIPRAEMLAELMRMKYG-- 107 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVD 161 IAI G+ GKTTT M+ L+ I T IG N IG L + Sbjct: 108 -------IAIAGTHGKTTTTSMVATILAKGGIDPTI-VIGGRLNSIGTNARLGQ------ 153 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 G F + + + FL + P IAV+T I HL + I+EI + + G Sbjct: 154 -GQFLVAEADESDGSFLK--LSPTIAVVTNIDADHLDFYKDIDEIKDTFVQFINKVPFYG 210 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 L D+ A L K ++G S ADF+ + + +G + Sbjct: 211 LAVLCLDNGNI----ADIIPLVKKRFNTYGLSTQADFRATDVRHTGFTTSFVAHYKGTLL 266 Query: 282 -EVVHHGIGYHMAQNMLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 E+ G H N L T+ + ++I A++ KA G G+R++ Sbjct: 267 GEITFSMPGAHNVLNALATIAVAMELNIPFAEIQAGFKAFG------GVGRRFQVKGEVR 320 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 ++D+ Y +P ++A ++ + G RR+ V Sbjct: 321 DIMVVDD-YGHHPTEIRATLAA----AKGGWDRRLVV 352 >gi|257456474|ref|ZP_05621670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema vincentii ATCC 35580] gi|257446134|gb|EEV21181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema vincentii ATCC 35580] Length = 481 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 14/131 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-----ARMPVDV 160 S A ++A+TGS GK++T L L A +G N PLT A PV Sbjct: 113 SSAPVLAVTGSKGKSSTVSALYYGLQQCG-IPAFLG--GNITVSPLTFLTETRADTPV-- 167 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + EL LG++ L +P IA+IT I P H + + +E + K I+ +K Sbjct: 168 ---VLELSSWQLGDLAHCPQL-KPKIALITHIMPDHQNWYGSMERYVADKKIIYRNQDKN 223 Query: 221 GTIFLNYDDSF 231 NYDD + Sbjct: 224 DYTICNYDDGW 234 >gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 511 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 F +L+ A + H P+ N +S DSR++ FF KG +D ++ A Sbjct: 18 FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73 Query: 63 KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117 +GA + + D A + + +P V D+ A+ ++ A T+I TG+ Sbjct: 74 QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTK 133 Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161 GKTT T+ ++ AL + + I + H+ P L L RM VD Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219 + +S + + I V I+P H+S E+ + K+EI + Sbjct: 194 MKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261 + +N + S ++ L K+H LG K + SFG ++ AD+Q R Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292 >gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii ATCC 33806] gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii ATCC 33806] Length = 477 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 37/342 (10%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ +IPV D+LG L + +T + I G+ GKT+T M +A+ Sbjct: 84 NPELVAA-REHNIPVIRRSDLLG---------ELMTGSTQVLIAGTHGKTSTTSMAVVAM 133 Query: 131 SS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + ++A IG N G T A F + E S +R+ P IAV Sbjct: 134 QAAGMDPSFA-IGGQLNKAG---TNAHQGSGHCF-VAEADESDASLLRY-----SPDIAV 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKAKSHALGI 244 +T I P HL F E + L TG + + DD + E K K G Sbjct: 184 VTNIEPDHLDFFHTPEAYFQVFDDFAARLTDTGVLVVCLDDEHAAALGERQKTKVTVRGY 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + + + + ++Q S +++ + +EV G HM N L Sbjct: 244 GSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAG 303 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID--ESYNANPASMKAAISV 359 + DV + +S F G +R+ A+ G + ++ + Y +P ++A ++ Sbjct: 304 VLAGGDVAALAQGISEF---SGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTA 360 Query: 360 LSQ-ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + ++ G G+ I V M +Q F + AE LSL + Sbjct: 361 AREKLAARGSGQVIVVF--QPHMYSRTQEFAAEFAEALSLAD 400 >gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] Length = 512 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA LV+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 438 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPHVQPGDMVLL--SPAC 414 >gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM 16795] gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM 16795] Length = 450 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 43/306 (14%) Query: 94 ALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 +N+ A +L R IA++G+ GKTTT ML+ + I V Sbjct: 87 TINRAAFLGQLMREYKNSIAVSGTHGKTTTTSMLSTIFEH--------AELDPTILVGGN 138 Query: 153 LARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L + +V G + ++ E FL P IA++ I HL FSGI+EI ++ Sbjct: 139 LKSIGGNVKIGHSDHFITEACEYVDSFLN--FNPKIAIVLNIEEDHLDYFSGIDEIKASF 196 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----QC 266 + + L G +N D+ ++L H + K I FGK ++ D + C Sbjct: 197 NKFGKLLPSDGYFVINGDNQNMDIL----HDVKAKAI-KFGKKESNDVIIENIAFDDLGC 251 Query: 267 S--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA-DVDTAIKALSVFHPK 323 + ++M +L G + V G H N + IVS+++ D++T + + + Sbjct: 252 GSFDLNYMGKKLTGFKLSVP----GLHNIYNATSAI-IVSLVSGIDLETVKEGIIDY--- 303 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAV 374 G G+R+ +ID+ Y +P +KA +S + PH R I++ Sbjct: 304 TGVGRRFERKGQYNGAAIIDD-YAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISL 362 Query: 375 LGDMCE 380 L + E Sbjct: 363 LDEFAE 368 >gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. novicida U112] gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. novicida FTE] gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella novicida GA99-3548] gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella novicida U112] gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella novicida GA99-3548] gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. novicida FTE] gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf. novicida Fx1] Length = 417 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLN----LAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++ Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 290 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328 >gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp. 29_1] gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp. 29_1] Length = 447 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 54/291 (18%) Query: 44 FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F +K P + H F+L ++G IPV+ ++ +A Sbjct: 70 FVVKNPGINYHKPFVLRLKERG------------------IPVY---------TEIELAY 102 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-- 160 RL IAITG+ GKTTT ++ L + + G+ +G PL+ + D+ Sbjct: 103 RLSQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGN----VGTPLSELVLNEDLLH 158 Query: 161 --DFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D+ + E+ L +I P +A I + P HL + +EE ++K I+ Sbjct: 159 KSDYDVVLEMSNFQLLDIDAF----HPRVATIINLTPDHLDYMASLEEYYTSKTRIYMNQ 214 Query: 218 EKTGTIFLNYDDSFFE--LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + N DD + L K A I SF + AD + K Q + Sbjct: 215 DHNDIYLQNKDDVVLKEYLQKYPPQA----KIVSFSLEQEADCMI-KNDAIYYQGQHIIN 269 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 L + +G H QNM++ + DV + L+ F E R Sbjct: 270 LDDIKI------VGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTGVEHR 314 >gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium carboxidivorans P7] gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium carboxidivorans P7] gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium carboxidivorans P7] gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium carboxidivorans P7] Length = 458 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIF 165 A + +TGS GKTTT T + +I K +IG PL + +M D D + Sbjct: 117 AKVYGVTGSDGKTTT----TTLIYNILKQQGYKTWVGGNIGTPLFTEIEKMKSD-DKVVL 171 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L +T V P +AV+T ++P HL ++E +K IF+ + + L Sbjct: 172 ELSSFQL-----MTMNVSPEVAVVTNLSPNHLDIHKDMQEYIDSKKNIFKYQQSESLLIL 226 Query: 226 NYDDSF 231 N D++ Sbjct: 227 NRDNNL 232 >gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella novicida FTG] gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella novicida FTG] Length = 417 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++ Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNDTTYI 290 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328 >gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] Length = 567 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 23/251 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ DSR++ P + + A+ G G DF A GA V+ + + +PV Sbjct: 86 VTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADRAAATGLPVL 145 Query: 87 GVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D G + +LA R + + ITG+ GKTTT ++ L ++ +G+ Sbjct: 146 AVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLVGTVE 205 Query: 145 NHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVI 189 IG + P D M G + + V H +AV Sbjct: 206 MRIGDERIKSERTTPEATDLQALFAVMRERG-VEAVAMEVSSHALVLGRVDGCVFDVAVF 264 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 ++P H+ S +E+ AKA +F E + G + N+DD + L AK ++ + T Sbjct: 265 NNLSPEHMEFHSDMEDYFQAKARLFTERRARLGVV--NFDDEYGRRL-AKEASIPVVTFS 321 Query: 249 SFGKSKNADFQ 259 + G AD++ Sbjct: 322 AAGDPA-ADWR 331 >gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM 12804] gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii] Length = 468 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 51/372 (13%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG LT A + G + + Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLDPTFV--------IGGRLTSAGANARLGQGEYIVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L P +A++T I H+ + + + SA E + L G+ L Sbjct: 160 EADESDASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCA 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD+ E++ S + I ++G S +A + + + VQ Q ++ + Sbjct: 218 DDANVREIMPFVS-----RPITTYGLSPDAHVRGENVQADGTRMRFTVQRQDRATALPPL 272 Query: 287 GI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--------CA 333 I G H +N L + + + L + +AL+ F +G G+R+ A Sbjct: 273 AIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASF---KGVGRRFTQTGEFPVPAA 329 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G FTLID+ Y +P M A ++ P RRI + F D Sbjct: 330 HGGGTFTLIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-DFV 384 Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLV 442 VL + ++ V+ +G L D AL R++ V + E + L + + Sbjct: 385 RVLGGADAVLLTEVYAAGEPPLVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVR 444 Query: 443 DGDVVVVKSSNS 454 DGDVVVV + S Sbjct: 445 DGDVVVVMGAGS 456 >gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC 19718] gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas europaea ATCC 19718] Length = 473 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 158/378 (41%), Gaps = 39/378 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA RLR IAI G+ GKTTT ++ L+ + + IG L Sbjct: 98 LAELLRLRRG---IAIAGTHGKTTTTSLVASILAEAGQDPTFV------IGGKLKTVDSH 148 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216 + G F + + + FL ++P + V+T I H+S + + E E Sbjct: 149 ARLGKGEFIVVEADESDASFL--YLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEH 206 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWK--QCSEQSWME 273 L G L DD + + + + + ++G S++A + +C Sbjct: 207 LPFYGMAVLCVDDPHVREIIS----MITRPVTTYGIASEDAQICATNIRHDRCRMHFLAH 262 Query: 274 VQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY- 330 + + G +++EV + G H N L + + + L + +KAL+ F + R ++Y Sbjct: 263 IGVNGSPRTLEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYG 322 Query: 331 RCAL-NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L +QG F LID+ Y +PA + A ++ P GRR+ VL ++ Sbjct: 323 EIPLPDQGSFALIDD-YGHHPAEIAATMAAARNAFP---GRRL-VLAFQPHRYSRTRDLF 377 Query: 390 IDLAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQ 438 D VLS ++ + V+ +G + D +L R+I V Y E +D L I Sbjct: 378 EDFVRVLSGADVLLLTEVYPAGEEPIIAADSKSLARAIRVQGKIEPIYIEQIDELKATIH 437 Query: 439 SSLVDGDVVVVKSSNSCG 456 + DGDV+++ + S G Sbjct: 438 TIAQDGDVILIMGAGSIG 455 >gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM 2379] gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM 2379] Length = 460 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 116/299 (38%), Gaps = 33/299 (11%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYA 138 L +PV ++L L ++ IAI G+ GKTTT M L + I T Sbjct: 87 LHVPVIPRAEMLAELMRMKFG---------IAIAGTHGKTTTTSMAASILGHAGIDPTI- 136 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 IG N IG L + G F L + + FL ++ P IAV+T I HL Sbjct: 137 VIGGKLNAIGTNAQLGQ-------GKFLLAEADESDGSFL--VLSPTIAVVTNIDADHLD 187 Query: 199 NFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 ++S GIEEI + + G L DD + + K ++G S AD Sbjct: 188 HYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVK----KRYMTYGLSSQAD 243 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + +G + E+ G H N + + + L + Sbjct: 244 IRATHVRHDGFTTSFTAHFKGYRLGEISFTMPGAHNVLNAMACIAVALELDVPFSAIQEG 303 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 S F G G+R+ T++D+ Y +PA +KA ++ P E R +AV Sbjct: 304 FSRFG---GVGRRFTIKGEPRGITVVDD-YGHHPAEIKATLAAARLGWP--ERRIVAVF 356 >gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis E264] gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis Bt4] gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis E264] gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis E264] Length = 465 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD + L K + +G + +A + + + V +G+ + VV + Sbjct: 218 DDPNVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY--RCALNQGFFTLID 343 G H QN L + I + L DTAI +AL+ F+ R +RY A G +TLID Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADTAIQQALAEFNGVGRRFQRYGEMPAAGGGAYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + GDVV+ + Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase-like protein [polymorphum gilvum SL003B-26A1] gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative-like protein [Polymorphum gilvum SL003B-26A1] Length = 489 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 155/377 (41%), Gaps = 44/377 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SI 83 V+G++ DSR + P F A++G DG F+ A+++GA V+ + A++ S+ Sbjct: 21 VSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVAVLTDAQGAAALAGTMPDSV 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT---------------TKEMLTI 128 PV D AL +A R T++A+TG+ GKT+ + + TI Sbjct: 81 PVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHAGHASASLGTI 140 Query: 129 A-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184 ++S + Y + + + + + LAR+ D GI + SH E L VR Sbjct: 141 GTVTSRGRAYGGL-TTPDPVSLHAELARL---ADEGITHAALEASSHGLEQHRLDG-VRL 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALG 243 T + H+ + E+ AK +F L G++ ++ + + + A + G Sbjct: 196 VAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAVARERG 255 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + I++ G+ + AD +L + + V+ ++ G N L+ G+ Sbjct: 256 LH-IFTVGE-RGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAAGLA 313 Query: 304 SILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++AL GR G++ AL +D Y P +++ A++ Sbjct: 314 ITAGEATGAVLRALEDLEGAPGRLELVGRKANGAL-----VFVD--YAHKPDALENALAA 366 Query: 360 LSQISPHGEGRRIAVLG 376 L P GR V+G Sbjct: 367 L---RPFTCGRLFVVIG 380 >gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] Length = 487 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + DLL G+ Q V +DSR + P + F A+ G DG DFI A+ GA Sbjct: 3 SLDDLLAPWMALDTGVEFQQLV----LDSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGA 58 Query: 66 GLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTK 123 V+ + D + + V GV ++ L+ LA+ A ++ T+I +TG+ GKTT Sbjct: 59 VAVLADADADGRQADRNGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVT 118 Query: 124 EMLTIALSSIKKTYACIGSYNN 145 ++ L+++ +G+ N Sbjct: 119 QLCAQLLTALGHQAGVMGTVGN 140 >gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33 E1] gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33 E1] Length = 461 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 20/269 (7%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 + + G+ GKTTT M++ IA + + IG IG L V V EL Sbjct: 100 VGVAGTHGKTTTTSMISLIAERAGLEPTVAIGGELCDIGCNAKLGNGNVMV----AELDE 155 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G +F +P +AV+T + H++ + + + A + G L DD Sbjct: 156 SD-GSFQFF----QPSVAVVTNVDWDHVNYYPSRQSVVDAFVSFLANVPSDGFEVLCGDD 210 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHG 287 L + + ++G K DF +Q M L G+ + V Sbjct: 211 PGVRALLGRLEGQNCQNRVTYGLEKGNDFYPTNLEQ-YPGGGMSYTLNRFGRQVGRVRLT 269 Query: 288 I-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + G H N L L S L D + AL+ FH G +R + N G L+ + Y Sbjct: 270 VSGTHNLLNSLAALAAGSRLGISFDLMVSALNEFH---GVKRRLQQKGNAGDDILVYDDY 326 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P +KA ++ L Q+ P RR+ V+ Sbjct: 327 GHHPNELKATLTALGQMFPK---RRLVVV 352 >gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis MC58] gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis H44/76] Length = 468 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 147/377 (38%), Gaps = 64/377 (16%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 108 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 160 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 218 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 273 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 274 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 330 Query: 339 FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 L+ + Y +P M A + ++ PH R D+ E Sbjct: 331 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPH----RYTRTRDLFE-------- 378 Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437 D +VL+ + ++ V+ +G +A D AL R+I V Y E + L + Sbjct: 379 --DFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEML 436 Query: 438 QSSLVDGDVVVVKSSNS 454 + L DGD+V+ + S Sbjct: 437 LNVLQDGDIVLNMGAGS 453 >gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. novicida GA99-3549] gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella novicida GA99-3549] Length = 417 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 52/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++ Sbjct: 202 VYD----------VHNNGIK--YA------GEYQIIRGAIYRNST--------KLLDIAE 235 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 236 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 290 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 291 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 328 >gi|253732390|ref|ZP_04866555.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297207546|ref|ZP_06923982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911629|ref|ZP_07129073.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|253723912|gb|EES92641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887882|gb|EFH26779.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887050|gb|EFK82251.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 444 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 89 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378 >gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58] gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis CU385] gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis M04-240196] Length = 469 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 147/377 (38%), Gaps = 64/377 (16%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SME 282 D + K K ++G AD + Q V +Q K S E Sbjct: 219 DSEHVRAILPKVS----KPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFE 274 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 VV + G H N L +G+ + A V+ K L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 L+ + Y +P M A + ++ PH R D+ E Sbjct: 332 TALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPH----RYTRTRDLFE-------- 379 Query: 389 HIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFI 437 D +VL+ + ++ V+ +G +A D AL R+I V Y E + L + Sbjct: 380 --DFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEML 437 Query: 438 QSSLVDGDVVVVKSSNS 454 + L DGD+V+ + S Sbjct: 438 LNVLQDGDIVLNMGAGS 454 >gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus influenzae F3031] gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus influenzae F3031] Length = 437 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 80/356 (22%), Positives = 141/356 (39%), Gaps = 69/356 (19%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GK+T + T+ K +G N IG+P L+ + D + + EL Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ K G LN +D Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288 +FG+++N + + S W++ + GK +V + Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256 Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G H N+L + + ++D+ AL F +G R++ A + Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHHANGI 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393 I++S N S AA++ L + EG+ +LG D E+ EL HI Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + V L+ F S + ETM+ F++ +L GD+V++ Sbjct: 366 -ICYCFGRDGVQLAKF-----------SSQSYLFETMEQAIAFLRPTLQSGDMVLL 409 >gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri 93-146] gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella ictaluri 93-146] Length = 491 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 158/396 (39%), Gaps = 77/396 (19%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + A + IPV ++L L R R IAI G+ Sbjct: 81 RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 131 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M+ SSI YA G P V+ G+ + +H LG Sbjct: 132 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 171 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +A++T I H+ + G E + L G Sbjct: 172 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281 L DD L + +G + + ++G S++AD ++ +++QC Q + Q + + Sbjct: 231 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 286 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332 V + G H A N + S D + ++AL F +G G+R+ Sbjct: 287 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALDRF---QGTGRRFDFLGEFSLQHV 343 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G L+D+ Y +P + A I P RR+ ++ ++ + D Sbjct: 344 NNRPGRVMLVDD-YGHHPTEVDATIKAARAGWP---DRRLVMVFQPHRFTR-TRDLYDDF 398 Query: 393 AEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIH 423 A VLS ++ V+ +G H + D +L RSI Sbjct: 399 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRSIR 434 >gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing bacterium SSC/2] Length = 461 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 96/448 (21%), Positives = 174/448 (38%), Gaps = 78/448 (17%) Query: 44 FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82 F+I G D I H KGA + + T D+V +++ Sbjct: 34 FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 93 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +LG + + + IA++G+ GKTTT ML+ L + G Sbjct: 94 NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 + + I V L + ++ G E ++ E FL P I++I I H+ Sbjct: 138 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 195 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255 F +++I + E L G + +N + D + LKA+ G++ +KN Sbjct: 196 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 255 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314 + + + +G+ ++ + + G H +N L + + DVDT Sbjct: 256 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 309 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365 K L F G +R+ FT++D+ Y +P ++A + P Sbjct: 310 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 365 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421 H R IA L D + LS H+ + ++ + + +G +++ KD + R Sbjct: 366 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 417 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + VHY + D + FI + D+++ Sbjct: 418 VDVHYIKEFDDIEKFILKNCKKNDLLIT 445 >gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii] Length = 181 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 13/157 (8%) Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP++ V+T I HL +F E ++ E E L G + + DD L ++H Sbjct: 2 RPNLIVVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 61 Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMA 293 GI+ + +G + A+ QLR W+ + ++QL G+S G HMA Sbjct: 62 GIR-VRGYGSAGQAEAGGVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPGRHMA 120 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 N L + + + A VD + L+ F EG +R+ Sbjct: 121 LNALAAVVAAAEIGASVDDVLDGLAGF---EGVRRRF 154 >gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter litoralis HTCC2594] gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis HTCC2594] Length = 495 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 38/371 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G +ID R +AP F A +G +G D+I AV GA VV + G++ I Sbjct: 22 VSGFAIDHRKVAPGTVFGAFQGSAVNGEDYISQAVAAGAVAVVAQPEATVE-GAVHI--- 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 D A LA TI+A+TG+ GKT+T EM + A IG+ Sbjct: 78 AEDTPRRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVEMTRQLWRMAGERAASIGTLGVT 137 Query: 144 --NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIAVI 189 + + LT P V F G+ G++H+ G ++ + A Sbjct: 138 TPDESVSTGLT---TPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLPVAAAAF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL---NYDDSFFELLKAKSHALGIK 245 T + HL ++E AK +F E ++ GT + N + + + +A+ L + Sbjct: 195 TNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGNSEWTAQAIERARQRELRLF 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T+ G+ D +LR +E++ G++ ++ IG + N L G+ Sbjct: 255 TVGEQGE----DIRLRARTPTQLGQELEIEHAGETRKLRLPLIGEYQVANALTAAGLAIA 310 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 D +S P GR +R G +D ++ + A + L+ + P Sbjct: 311 TGTDPAAVWDGVSRLQPVRGRLERA-VITATGAPVYVDYAHTPD-----ALEAALAALRP 364 Query: 366 HGEGRRIAVLG 376 H EGR + + G Sbjct: 365 HVEGRLLCIFG 375 >gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] Length = 483 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 152/382 (39%), Gaps = 58/382 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIP 84 + G+ DSR I P + F A G DG FI AV GA VV G L SIP Sbjct: 20 ITGMQNDSRLIQPGDLFVAYPGSAADGRLFIAKAVSAGAVAVVYEPANFPIDGVLPTSIP 79 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D+ L +A A + TI ITG+ GKTT L A + + A IG+ Sbjct: 80 CIAVPDLATKLAYIAKAFYDDPENSLTITGITGTNGKTTIAYQLAQAHHLLGQGAAYIGT 139 Query: 143 YNNHIGVPLTLARMPVD-----------VDFGIFELGMSHLGEIRFLTHLVRPHI----- 186 IG P+D + E G+ + + +H + H Sbjct: 140 ----IGQGNVNELQPLDNTTPDSLRLQKLLHQYKEQGLKQVC-MEVSSHALAQHRVDALT 194 Query: 187 ---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241 A+ T + HL +E A+AKA +F G E +N DD + +++ A K H Sbjct: 195 FKQAIFTNLTLDHLDYHHNMENYAAAKAILFSG-ESLQWAIINQDDEYQQVMAAALKPH- 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQ 294 +K + ++G ++ D + W+ + + G ++ VH G H A Sbjct: 253 --VKKL-TYGLREDCDVKAVNWR---------MDINGTEID-VHSPWGQHHLRIKALGAF 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+ +L + S L A K ++V + R + + L+D Y P +++ Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVAS-APYVLVD--YAHTPDALE 356 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 A+ L QI +GR V G Sbjct: 357 NALVTLGQIK---KGRLWVVFG 375 >gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas sp. SM9913] gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas sp. SM9913] Length = 469 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 28/264 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + + T+ IG N G + + DF I E Sbjct: 107 IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL HL +P ++VIT I H+ + G +E++ E L G + Sbjct: 162 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVEFIHNLPFYGLAVVCI 216 Query: 228 D-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVH 285 D D EL+ + + ++G+S AD+++ + Q + V QG+S+ Sbjct: 217 DSDVAAELIPRFG-----RPVITYGESHEADYRMSDFSQTANTCQFTVTNKQGESLTAKL 271 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTL 341 + G H A N + + + AL F EG G+R++ +G L Sbjct: 272 NMPGKHNALNATAAIAVAKDQNIANHAILAALDTF---EGIGRRFQHYGEFENERGSVML 328 Query: 342 IDESYNANPASMKAAISVLSQISP 365 +D+ Y +P+ + A I+ + P Sbjct: 329 VDD-YGHHPSEVAATITAAREGWP 351 >gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium prausnitzii SL3/3] Length = 467 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+A+TGS GKTTT + I K Y G H+G + A +P+ + ++ + Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVSPEDVAV 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P+IAV+T + P HL + ++E AK I ++ L Y++ Sbjct: 173 VELSSFQLISMHASPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232 Query: 230 SFFELLKA 237 ++A Sbjct: 233 EISRSMQA 240 >gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] Length = 512 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA LV+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVMGTTGN 166 >gi|269122825|ref|YP_003305402.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus moniliformis DSM 12112] gi|268314151|gb|ACZ00525.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptobacillus moniliformis DSM 12112] Length = 457 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 84/379 (22%), Positives = 149/379 (39%), Gaps = 58/379 (15%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACI--GSYNNHIGVPL-----TLARMPVDVDF 162 IIA TG+ GKTTT KTY + +N +G + + + ++D+ Sbjct: 92 IIAFTGTNGKTTT----------CTKTYEMLKKAGFNVELGGNVGRSFAEIVKENKELDY 141 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L ++P+I+ I + P HL + +E+ K IF +K Sbjct: 142 IVLELSSYQLEN----NPKIKPYISGIINLTPDHLGRYKDVEDYYMTKFNIFSNQDKKDR 197 Query: 223 IFLNYDDSFFELLKAKSHAL----GIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEV 274 + +N DD+ F L K+ L K +Y +K + F Q+ K SE + Sbjct: 198 MIVNVDDATFLNLYNKAKELENYRNPKRVYISTNNKGSIFVKNGQIYVMKDLSEMYNSKF 257 Query: 275 QLQ---GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 L K ++V + G H +NML + I L E R + + Sbjct: 258 SLSQSADKLIDVKDIALKGEHNLENMLFLIATAKICGVPNKVIRNFLKEVKSIEHRMEDF 317 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQ---ISPHGEGRRIAVLGDMCEMGELSQS 387 N F I++S N AS K AI+ + GE +++ + E+G+ Sbjct: 318 FKKSNTVF---INDSKGTNVASTKKAIASYENDVILICGGEDKKVPLYELGKEIGK---- 370 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL-VDG 444 I ++ G + +++ L + + YS ET+D + I+ ++ + Sbjct: 371 ------------KIKFTYIYGENRYLIENELKKVGYSKYSIFETVDECIMDIKDNVNFEE 418 Query: 445 DVVVVKSSNSCGFYRLINL 463 D+ ++ S + F + N Sbjct: 419 DITILYSPATSSFDQFKNF 437 >gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] Length = 493 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 153/387 (39%), Gaps = 63/387 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+++DSR++ P F A+ G G +FI +A++ GA V+ + + A I Sbjct: 23 ITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVLTDVEG-AKI-------- 73 Query: 87 GVDDVL-GALNKLAVAARLRSKA-------------TIIAITGSVGKTTTKEMLTIALSS 132 DDVL G+ L VA R T++ +TG+ GKT+ S+ Sbjct: 74 -ADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATFTRQIWSA 132 Query: 133 IKKTYACIGSYN----------NHIGVPLTLARMPVDVDFGIFEL----GMSHLGEIRFL 178 + IG+ + P+TL R+ D SH + R L Sbjct: 133 LGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSHGLDQRRL 192 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDD---SFFEL 234 VR A T HL + +AKA +F L GT +N +D + L Sbjct: 193 DG-VRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPRGAEIAL 251 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L A+ + + S G K D Q+ + + + QG+ +V + IG A+ Sbjct: 252 LAAERG----QRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLIGGFQAE 307 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFH--PK-EG-RGKRYRCALNQ-GFFTLIDESYNAN 349 N+ + G+ + + A VF P+ EG RG+ A + G +D Y Sbjct: 308 NVALAAGLA------IGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVD--YAHT 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ A+ L PH GR + V G Sbjct: 360 PDAIATALKAL---RPHVMGRIVVVFG 383 >gi|253734476|ref|ZP_04868641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253727530|gb|EES96259.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|320141683|gb|EFW33518.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143768|gb|EFW35542.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus MRSA177] Length = 444 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 89 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 236 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378 >gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003] gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003] Length = 1288 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 37/309 (11%) Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA------ITGSVGKTTTKEMLTIALS 131 I S +IP V+ L V +R R+ A +IA + GS GK+T ML LS Sbjct: 69 IASPAIPETHVERRAARRAGLPVKSRARALAEVIADRQTICVAGSHGKSTVTAMLIHILS 128 Query: 132 SIKKT---YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + Y ++ + +P L D F + E +H + +P +A+ Sbjct: 129 AAGQEDFGYMLGAAFADAARLPARLGA--PDAPF-VTEACEAHGALAAW-----QPSLAI 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLK-AKSHALGIKT 246 +T + H ++ G+ + A A+ L G DD +LL+ A+ AL Sbjct: 181 LTNLDDEHADHYGGLPGLRRAVADFLSRLPPEGRAVACGDDPQVLDLLRRARCAAL---- 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305 Y G AD LR + V L G + + + G H +N L LG+ Sbjct: 237 TYGLG----ADNDLRAVPDGT--GGATVFLNGTDLGRLSLIVPGRHNLRNALAALGMALT 290 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L TA AL+ F G +R + L D+ + +PA ++AA++VL + + Sbjct: 291 LGIGFATAAGALADF---PGLARRLQPVAPGNRLRLFDD-FAHHPAEIEAALAVLRETT- 345 Query: 366 HGEGRRIAV 374 EGR IA+ Sbjct: 346 --EGRLIAI 352 >gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella frigidimarina NCIMB 400] gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella frigidimarina NCIMB 400] Length = 496 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 35/257 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-----SL 81 VNG+++DSR + F A+ G DG FI A+ GA ++++TD G Sbjct: 19 VNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGATAILIHTDNPDEHGIVDRLQY 78 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++P+ + L+ +A L + ++I ITG+ GKT+ +++ + + A Sbjct: 79 TVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGKTSVSQIIAQIVYLLGHQAAV 138 Query: 140 IGSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPH------- 185 +G+ N + L T + V F + L + +H LV+ Sbjct: 139 MGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELCAMEVSSHGLVQGRVEAAPFE 198 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGI 244 IAV T ++ HL ++ A+AK +F+ K G I N DD A+G Sbjct: 199 IAVFTNLSRDHLDYHGDMDSYAAAKKRLFKFPSIKHGVI--NIDD-----------AVGA 245 Query: 245 KTIYSFGKSKNADFQLR 261 K + +N F ++ Sbjct: 246 KWLTELASDQNKSFSIK 262 >gi|15924730|ref|NP_372264.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927317|ref|NP_374850.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus N315] gi|21283412|ref|NP_646500.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486565|ref|YP_043786.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|148268218|ref|YP_001247161.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|150394286|ref|YP_001316961.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156980057|ref|YP_001442316.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|255006526|ref|ZP_05145127.2| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794123|ref|ZP_05643102.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781] gi|258415827|ref|ZP_05682098.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763] gi|258420656|ref|ZP_05683595.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719] gi|258438306|ref|ZP_05689590.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299] gi|258443764|ref|ZP_05692103.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115] gi|258445975|ref|ZP_05694151.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300] gi|258448298|ref|ZP_05696425.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224] gi|258454175|ref|ZP_05702146.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937] gi|269203378|ref|YP_003282647.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282893234|ref|ZP_06301468.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117] gi|282927869|ref|ZP_06335480.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102] gi|295406051|ref|ZP_06815859.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819] gi|296276768|ref|ZP_06859275.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297245024|ref|ZP_06928901.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796] gi|54037858|sp|P65475|MURC_STAAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|54037859|sp|P65476|MURC_STAAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|54041508|sp|P65474|MURC_STAAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56749192|sp|Q6G8I7|MURC_STAAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224735|sp|A7X3H5|MURC_STAA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082503|sp|A6U2K6|MURC_STAA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082504|sp|A5ITR2|MURC_STAA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|13701535|dbj|BAB42829.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus N315] gi|14247512|dbj|BAB57902.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|21204853|dbj|BAB95548.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245008|emb|CAG43469.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|147741287|gb|ABQ49585.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149946738|gb|ABR52674.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156722192|dbj|BAF78609.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257788095|gb|EEV26435.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9781] gi|257839420|gb|EEV63893.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9763] gi|257843260|gb|EEV67670.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9719] gi|257848350|gb|EEV72341.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus A9299] gi|257851170|gb|EEV75113.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8115] gi|257855217|gb|EEV78156.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6300] gi|257858537|gb|EEV81413.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A6224] gi|257863627|gb|EEV86384.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5937] gi|262075668|gb|ACY11641.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282590379|gb|EFB95458.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A10102] gi|282764552|gb|EFC04678.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8117] gi|285817422|gb|ADC37909.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus 04-02981] gi|294969048|gb|EFG45069.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8819] gi|297178104|gb|EFH37352.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A8796] gi|302333404|gb|ADL23597.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus JKD6159] gi|312830118|emb|CBX34960.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130621|gb|EFT86607.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329727526|gb|EGG63982.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329733180|gb|EGG69517.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 437 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC 29176] gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC 29176] Length = 458 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 161/392 (41%), Gaps = 44/392 (11%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129 N +++ ++G IP+ ++LG L +++ T IA++G+ GKTTT M++ + Sbjct: 83 NPELMEAVGK-KIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISEVL 133 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L++ +G IG + + + G F ++ E P I+VI Sbjct: 134 LAADMDPTISVGGILKTIGGNIRVGKS------GNF---ITEACEYTNSFLHFYPKISVI 184 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 I HL F +E+I + + L GT+ +N D ++ + L I + Sbjct: 185 LNIEEDHLDFFKDLEDIRHSFHQFSALLPSDGTLIINGDIKDYQEIY---EGLDCNVI-T 240 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306 +G S D+ + Q E+ ++ +L S V + G H N L + +L Sbjct: 241 YGSSAEFDYSATEI-QYDEKGFVSFELLKHNTSCGRVQLSVTGDHNVSNALAAIATAELL 299 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357 +DT K L F G +R+ T++D+ Y +P A++KAA Sbjct: 300 GIPMDTIRKGLLSF---SGTDRRFEYKGTFNGVTVVDD-YAHHPTEIAATLKAAQHYPHN 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + PH R A + E LS + H+ LA++ + + +S + K+A Sbjct: 356 EIWCVFQPHTYTRTKAFFHEFAEA--LSHTDHLVLADIYAARETDTLGISSSDL--AKEA 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 HY + + F++ + GD+++ Sbjct: 412 AKLGTDTHYYPSFAEIEAFLKENCKSGDLLIT 443 >gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] Length = 490 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 39/262 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHDF AV+ GA ++ + + +PV Sbjct: 23 ITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPL-----DVDVPVI 77 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA A + + +I +TG+ GKTTT ++ + K IG+ + Sbjct: 78 VVRDSRRAMAVLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVH 137 Query: 145 NHIG---------------VPLTLARMPVD-VDFGIFELGMS--HLGEIRFLTHLVRPHI 186 IG + T +M + VD I E+ H+G + H + Sbjct: 138 IKIGDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRV----HGCDYDV 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKSH 240 AV T + HL +EE +AK +F L E+ LN DD + K + Sbjct: 194 AVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQYYKHMTA 253 Query: 241 ALGIKTIYSFGKSKNADFQLRK 262 A T+ ++G ++D ++ Sbjct: 254 A----TVITYGTKTDSDIMAKR 271 >gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1] gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1] Length = 463 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 96/448 (21%), Positives = 174/448 (38%), Gaps = 78/448 (17%) Query: 44 FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82 F+I G D I H KGA + + T D+V +++ Sbjct: 36 FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 95 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +LG + + + IA++G+ GKTTT ML+ L + G Sbjct: 96 NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 + + I V L + ++ G E ++ E FL P I++I I H+ Sbjct: 140 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255 F +++I + E L G + +N + D + LKA+ G++ +KN Sbjct: 198 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 257 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314 + + + +G+ ++ + + G H +N L + + DVDT Sbjct: 258 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 311 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365 K L F G +R+ FT++D+ Y +P ++A + P Sbjct: 312 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 367 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421 H R IA L D + LS H+ + ++ + + +G +++ KD + R Sbjct: 368 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + VHY + D + FI + D+++ Sbjct: 420 VDVHYIKEFDDIEKFILKNCKKNDLLIT 447 >gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae PittEE] gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae PittEE] Length = 437 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 81/356 (22%), Positives = 138/356 (38%), Gaps = 69/356 (19%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GK+T + T+ K +G N IG+P L+ + D + + EL Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ E LN +D Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLNNED 214 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288 +FG+ +N Q + + S W++ + GK +V + Sbjct: 215 KL-----------------TFGEGENQARQTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256 Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G H N+L + + ++D AL F +G R++ A Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAVGINLDAIRTALRHF---KGLDHRFQLAHQANGV 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393 I++S N S AA+S L + EG+ +LG D E+ EL HI Sbjct: 314 RWINDSKATNVGSTVAALSGL-----YVEGKLHLLLGGDGKGADFSELAELINQPHI--- 365 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 I + + +LA S + ETM+ F++ +L GD+V++ Sbjct: 366 -------ICYCFGRDGALLA-----KLSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409 >gi|57652038|ref|YP_186623.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87159924|ref|YP_494380.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195554|ref|YP_500360.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221845|ref|YP_001332667.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509957|ref|YP_001575616.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258424154|ref|ZP_05687036.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635] gi|258452291|ref|ZP_05700304.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948] gi|262049049|ref|ZP_06021927.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30] gi|262051815|ref|ZP_06024032.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus 930918-3] gi|282925627|ref|ZP_06333276.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765] gi|284024787|ref|ZP_06379185.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus 132] gi|294849901|ref|ZP_06790640.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754] gi|68565674|sp|Q5HF34|MURC_STAAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|109892742|sp|Q2FFZ8|MURC_STAA3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|122539287|sp|Q2FXJ0|MURC_STAA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|172048949|sp|A6QHS3|MURC_STAAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082505|sp|A8Z4G7|MURC_STAAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|57286224|gb|AAW38318.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87125898|gb|ABD20412.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203112|gb|ABD30922.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374645|dbj|BAF67905.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368766|gb|ABX29737.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257845775|gb|EEV69807.1| UDP-N-acetylMuramate-alanine ligase [Staphylococcus aureus A9635] gi|257860016|gb|EEV82851.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A5948] gi|259160309|gb|EEW45336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus 930918-3] gi|259162866|gb|EEW47430.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus D30] gi|282592407|gb|EFB97421.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9765] gi|294823240|gb|EFG39670.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus A9754] gi|315197209|gb|EFU27548.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus CGS01] gi|329726994|gb|EGG63451.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 437 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|323439606|gb|EGA97326.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O11] Length = 437 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 511 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 F +L+ A + H P+ N +S DSR++ FF KG +D ++ A Sbjct: 18 FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73 Query: 63 KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117 +GA + + D A + + +P V D+ A+ ++ A T+I TG+ Sbjct: 74 QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTK 133 Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161 GKTT T+ ++ AL + + I + H+ P L L RM VD Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219 + +S + + I V I+P H+S E+ + K+EI + Sbjct: 194 MKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCR- 252 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261 + +N + S ++ L K+H LG K + SFG ++ AD+Q R Sbjct: 253 --ILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292 >gi|253315887|ref|ZP_04839100.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 429 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] Length = 500 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 157/381 (41%), Gaps = 50/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR + P F AI+G YDGH FI AV +GA VV + +P Sbjct: 24 IQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVARGAAAVVGERPLALE----GVPYV 79 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL LA A A+++ + TG+ GKTTT ++ L + IG+ + Sbjct: 80 QVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGKTTTTHLIRWVLEAGGHPTGLIGTVH 139 Query: 145 NHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------HI 186 N I G L + R P D M G +TH V + Sbjct: 140 NIIAGRSLPVERTTPEAADLQKLLAAMRDEG----MTHAVMEVSSHALALQRVAGCAFDV 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI-------FLNYDDSFFELLK 236 V T + HL + +E+ A+AKA +F L E GT +N DD + E + Sbjct: 196 GVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGTTKPGPKAAVINADDPWGEFMA 255 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A+S+A + ++G ++ AD R+ + + ++ V +G++ V G N Sbjct: 256 ARSNA----PVVTYGLNRPADITARQVEVEPGGIRFILVSPKGEA-PVRLRLTGRFNVYN 310 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L G L D T + L GR + R Q F ++D Y P + Sbjct: 311 ALAAAGAGLALGLDPATVARGLESLQAVPGRLE--RIDRGQPFAVIVD--YAHTPDGLDN 366 Query: 356 AISVLSQISPHGEGRRIAVLG 376 + + +++ G+GR I V G Sbjct: 367 VLRSVRELA--GQGRVICVFG 385 >gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216] gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216] Length = 450 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 25/159 (15%) Query: 49 PHYDGH---DFILHA--VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 P+ +GH + IL A V K G + M+ + IPV ++++ A R Sbjct: 49 PYEEGHHSEERILAADEVVKSPG-IPDKAPMIVKLREAGIPV---------ISEMEFAGR 98 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 KA I +TGS GKTTT ++ L A G +IG + D D+ Sbjct: 99 YLGKARTICVTGSNGKTTTTSLIYKILRDAGYNVALGG----NIGESFAYSVATGDYDWY 154 Query: 164 IFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + EL L G RF R HI V+T I P HL + Sbjct: 155 VLELSSFQLDGMFRF-----RAHIGVLTNITPDHLDRYD 188 >gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 86-028NP] gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus influenzae NT127] gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus influenzae 86-028NP] gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus influenzae NT127] gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus influenzae R2846] Length = 437 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 69/356 (19%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GK+T + T+ K +G N IG+P L+ + D + + EL Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ E LN +D Sbjct: 162 FQLE----TTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAE---VGVLNNED 214 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 +FG+ +N Q + + S W++ + GK +V Sbjct: 215 KL-----------------TFGEGENQARQTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256 Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +G H N+L + + ++D+ AL F +G R++ Sbjct: 257 LPCEEVTLVGRHNYMNILAATALAQAVGINLDSIRTALRHF---KGLDHRFQLVHQANGI 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393 I++S N S AA++ L + EG+ +LG D E+ EL HI Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + V L+ F S + ETM+ F++ +L GD+V++ Sbjct: 366 -ICYCFGRDGVQLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409 >gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Magnetospirillum magnetotacticum MS-1] Length = 457 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 ++ ++A+TG+ GK+TT +L L+ A G+ L L +P D + + Sbjct: 107 KAGTRMLAVTGTNGKSTTTTLLAHVLAECGLPVAAGGNLGT---AALDLPELPGDGRY-V 162 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L LTH ++ A++ I P HL G+ +AK +F+ L G Sbjct: 163 LELSSYQL----ELTHSLKLGAAILLNITPDHLGRHGGMNGYIAAKRRVFDFLTPGGAAV 218 Query: 225 LNYDDSFFELLKAKSHALGIKTI 247 + DD + A+ G++ + Sbjct: 219 IGVDDGPCRAIAAELERRGLRVV 241 >gi|298695008|gb|ADI98230.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp. aureus ED133] Length = 417 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 62 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 112 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 113 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 156 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 157 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 208 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 209 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 268 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 269 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 323 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 324 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 351 >gi|219684934|ref|ZP_03539875.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr] gi|219671672|gb|EED28728.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr] Length = 468 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 25/184 (13%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139 L+IP+ +VLG L++ K I I GS GKTTT L I + Sbjct: 96 LNIPILSYPEVLGELSR---------KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVI 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197 +GS G T+A GI ++ + E + H + P++ ++T + H+ Sbjct: 147 VGSSVKDFGDNSTIA--------GISDIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNA 256 F E + A + L+K G + +N DD LLK KS I+SFG + Sbjct: 197 DFFKNYEALEDAFLQYINNLKKNGILIINSDDK--NLLKIKSQINREDINIFSFGSRDLS 254 Query: 257 DFQL 260 +FQ+ Sbjct: 255 NFQI 258 >gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Exiguobacterium sibiricum 255-15] gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium sibiricum 255-15] Length = 449 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 11/145 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 +KA +AITGS GKTTT ++ L K G +IG P + +A+ D + Sbjct: 108 TKADWVAITGSNGKTTTTTLVHELLKRGSKRVHLAG----NIGFPAVEVAQQAEAGDVIV 163 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L I P A ++PAHL + A+AKA IF +++ G + Sbjct: 164 IELSSFQLMGIESFC----PVSAAFLNLSPAHLDYHGDVTSYAAAKARIFSNMDEAGRLV 219 Query: 225 LNYDDSFFELLKAKSHALGIKTIYS 249 +N DD E+++ A + +S Sbjct: 220 VNADDE--EVMRLSETAAAERLTFS 242 >gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 503 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 152/398 (38%), Gaps = 42/398 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 + + DSR I P F + G H DGHD+ A++ GA +V ++ G+++ I V Sbjct: 23 ITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIRNGAVAIVAERELSGLPGNVTHITV 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 +L L R + +I ITG+ GKTTT M+ L+ ++ IG+ Sbjct: 83 PDTRRILPILANAFFGDPTR-QLKLIGITGTNGKTTTTHMVDQILNDARRKTGIIGTLYM 141 Query: 146 HIG--VPLTLARMPVDV--------------DFGIFELGMSH---LGEIRFLTHLVRPHI 186 IG V TL P + ++G+ E+ SH +G +R Sbjct: 142 KIGNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVS-SHGLDMGRVRGCDF----QT 196 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-----TIFLNYDDSFFELLKAKSHA 241 V T ++ HL +E + K +F L + LN DD+ ++ A Sbjct: 197 VVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDAASSYYAKRTSA 256 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++G AD + + E + S +V G H N L + Sbjct: 257 ----QIITYGIQNQADVRATQIHHSREGCVFHAETPWGSSDVNLKVHGAHNIYNALAAMT 312 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ +L F GR + + + F ++D Y NP +KA + Sbjct: 313 TCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTG--RRFGVVVD--YAHNPDGLKATLQSAK 368 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 I+ G+ I V+G E + D+A S Y Sbjct: 369 AIT---SGKMICVMGCRGERDRSKRPIMADIAASYSDY 403 >gi|323441520|gb|EGA99172.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus O46] Length = 437 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVPNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila UNI-1] Length = 461 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 44/379 (11%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 K +IA+ G+ GKTTT M+ LSS+ + + I IG + + + G + Sbjct: 100 KYRVIAVAGTHGKTTTTGMIAWMLSSLAQNPSYI------IGG--VVRDLHTNAHAGKSD 151 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L + E + + PHIAVIT + H F + + + A + ++ G + +N Sbjct: 152 LFVIEADEYDRMFLGLHPHIAVITYLEHDHPDCFPTMADYSGAFEDFIRQIQAGGILLVN 211 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGKSM 281 D L ++ G+K + ++G+S++ + L+ +W S W ++ G++ Sbjct: 212 GDHPPTRAL-GQATPKGVK-VMTYGESEHNTYFLKHASVNRWGGFSADVWKQMP-DGENR 268 Query: 282 EVVHHGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 ++H + G H N L L + L + A +AL +FH G G+R+ Sbjct: 269 RLLHLALQVPGKHNLLNALAALAVADQLGLMLSPAAEALHLFH---GTGRRFEVRGEANG 325 Query: 339 FTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 TLID+ Y +P ++ ++ + + PH R A++ + C QSF Sbjct: 326 VTLIDD-YAHHPTEIRTTLAAARARYPERHIWAVWQPHTYSRTQALMEEFC------QSF 378 Query: 389 H-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 D VL +Y + GF + + + V + T++ ++ + L GDVV Sbjct: 379 EDADAVVVLEIY-AAREKNPGFSAREVVNRMKHPAAV-FQPTLETAQEYLLNCLQPGDVV 436 Query: 448 VVKSSNSCGFY--RLINLL 464 +V S+ RL+++L Sbjct: 437 LVLSAGDADALNARLLDVL 455 >gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp. MP688] gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp. MP688] Length = 460 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%) Query: 102 ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 A+ R +++ +IAITG+ GKTT +T + + K +IG+P+ A V+ Sbjct: 103 AQFRPRSSKVIAITGANGKTT----VTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158 Query: 161 DFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D G ++ + L + T + P A + + H+ + G+ E A+AKA I +G Sbjct: 159 D-GAPDVYVLELSSFQLETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG--- 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 G LN +D++ ++ AL + + +FG Sbjct: 215 AGVQVLNREDAW-----CRNMALPDQPVVTFG 241 >gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 476 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 86/358 (24%), Positives = 148/358 (41%), Gaps = 55/358 (15%) Query: 96 NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143 N++ V R +R K+T+ A+ G+ GKTTT M+ L + I T I SY Sbjct: 90 NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 ++ AR+ D D+ + E S +R L A++T I P HL ++ Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E++ A E + G FL D + + + + + + ++G S AD + Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316 S + ++G+ ++ I G H QN L +G V++ + D AI+ Sbjct: 253 TPISGGNRFTAVIRGRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311 Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366 + F + R R + G +ID+ Y +P +KA +S V++ + PH Sbjct: 312 FARFGGVKRRFSRVGEIKIGDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370 Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R + L D+ M E +F+ D+ V +Y ++G AL L + H Sbjct: 371 ----RFSRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422 >gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 511 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 36/283 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 F +L+ A + H P+ N +S DSR++ FF KG +D ++ A Sbjct: 18 FKELIVAGKWHDRA--PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAAN 73 Query: 63 KGAGLVVVNTDMVASIGS---LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSV 117 +GA + + D A + + +P V D+ A+ ++ A T+I TG+ Sbjct: 74 QGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTK 133 Query: 118 GKTT----TKEMLTIALSSIKKTYACIGSYNN-------HIGVP--LTLARM---PVDVD 161 GKTT T+ ++ AL + + I + H+ P L L RM VD Sbjct: 134 GKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQ 193 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEK 219 + +S + + I V I+P H+S E+ + K+EI ++ Sbjct: 194 MKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEI---IDN 250 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLR 261 + +N + S ++ L K+H LG K + SFG ++ AD+Q R Sbjct: 251 CRILVVNRECSQYDYLAEKAHDLG-KQVISFGSDQSAADYQYR 292 >gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753] gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753] Length = 492 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I A+TGS GKTTT +++ L + KT G +IG PL +P + ++ + Sbjct: 148 IYAVTGSDGKTTTTTIISEMLKAAGKTVHLGG----NIGCPL----LPKVEEIRKDDVAV 199 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P +AV+T +AP HL ++E AK I G LN D+ Sbjct: 200 VELSSFQLISMRKSPDVAVVTNLAPNHLDIHKDMQEYIDAKKNIILHQNAFGRAVLNLDN 259 Query: 230 SF 231 Sbjct: 260 EI 261 >gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium breve DSM 20213] gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium breve DSM 20213] Length = 481 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 22/278 (7%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR A I ITG+ GKT+T EM + L++ G+ + + ++L+R + Sbjct: 95 ARTGKPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASG-DMSMSLSRCATNPK 153 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + +S ++ F T + A IT IA HL G E A+ K+++F + Sbjct: 154 HDVLCVELSSF-QLHF-TDSLELDCAAITNIADDHLDWHGGRENYAADKSKVFRAARR-- 209 Query: 222 TIFLNYDDS-FFELLKAKSHALGIKTI-YSFGKSKNADFQLRK-WKQCSEQSWMEVQLQG 278 I N D+ EL +A A G + + ++ + + + W ++S + G Sbjct: 210 VIAYNAQDAKVSELAQAAPVAAGCRKVGFTLNEPEAGQIGIADGW--IVDRSGVAGGKVG 267 Query: 279 KSMEVVH----------HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + +++ G Y H+ + L L +V L AD +TA++AL F P R Sbjct: 268 EPIKLAAIADFTHLMEPDGSLYPHLVADALTALVLVLGLGADRETALEALQTFKPGGHRI 327 Query: 328 KRYRCA-LNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A +N G +D+S N + A++S S S Sbjct: 328 ETVAEARVNGGVIRFVDDSKATNGHAANASLSSFSAKS 365 >gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 469 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 152/379 (40%), Gaps = 46/379 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + + + + T+ IG N G L + G + + Sbjct: 109 IAIAGTHGKTTTTSLTASILGAAGLDPTF-VIGGKLNAAGTNARLGK-------GEYIVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 161 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCV 218 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + K K ++G AD + Q V + K E G Sbjct: 219 DSAHVRAILPKVS----KPYATYGLDDTADIYATDIENIGAQMKFTVHVNMKGHERKTFG 274 Query: 288 I-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGF 338 + G H N L +G+ + A V+ + L F EG G+R++ L G Sbjct: 275 VVLNMPGRHNVLNALAAIGVALEVGAPVEAIQQGLLGF---EGVGRRFQKYGDIKLPNGG 331 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS- 397 L+ + Y +P M A ++ P +R+ VL ++ D ++L+ Sbjct: 332 TALVVDDYGHHPVEMAATLAAARGAYPE---KRL-VLAFQPHRYTRTRDLFEDFTKILNT 387 Query: 398 --LYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 L ++ V+ +G +A D AL R+I V Y E++ L + + L DGD+V Sbjct: 388 VDLLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMV 447 Query: 448 VVKSSNSCGFYRLINLLLE 466 + + + R+ LLE Sbjct: 448 L--NMGAGNINRVPTALLE 464 >gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium botulinum A3 str. Loch Maree] gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium botulinum A3 str. Loch Maree] Length = 458 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L K+ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--KEGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSDNLLV 225 Query: 225 LNYDDSFFELLKAKSHALG-------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 LN DD + ++ ALG ++ +Y+ N ++ + C + +++L+ Sbjct: 226 LNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQGKEICDSK---DIKLK 280 Query: 278 GK 279 G+ Sbjct: 281 GR 282 >gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella vaginalis 409-05] gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella vaginalis 409-05] Length = 533 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 17/219 (7%) Query: 49 PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 P D HDF K +V T + S +IPV +V A + R Sbjct: 62 PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPVMS--EVELAWRLRVPSQR 119 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 A I ITG+ GKT+T EM + L++ +G +IG ++ A + + D Sbjct: 120 TNKPAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAVG----NIGKSVSHAALECEHDAL 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 EL L T + A IT IA HL G+E A K+++F ++K + Sbjct: 176 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMESYARDKSKVFNNVQK-ALV 230 Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLR 261 + D+ +L A G K I ++ + K+ + ++ Sbjct: 231 YNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVK 269 >gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] Length = 495 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 30 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA2] gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL044PA1] gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA3] Length = 499 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 90/388 (23%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + ++G H G F A + GA V+ + +PV Sbjct: 16 ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDEHGAKLAVEAGVPVV 75 Query: 87 GVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VDD A+ + T+ ITG+ GKTTT ++ L + IG+ Sbjct: 76 IVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFLVEAGLRTAGHHVGTIGTIG 135 Query: 145 NHI-GVPLTLAR----MPVDVDF-GIF----ELGMSHLGEIRFLTHLVRPH--------I 186 + G L AR P D G+F E G S + + +H + + Sbjct: 136 FRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDV-VMEVSSHALALQRVDGTCFDV 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + HL +++ AKA +F L + G I N DD L + A G++ Sbjct: 195 VAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVI--NVDDPRGRQLIERMQANGVR 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + + +D+Q+ W + + +V + G +N M L ++ Sbjct: 253 AVTT-SIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLPGEFNVRNAAMALAMLET 311 Query: 306 LTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAISVLSQI 363 D L S P G+ R L T L+D + P ++ +A+ + Sbjct: 312 AGLAFDDVADGLCSAQVP----GRMERVDLGADAPTALVD--FAHTPQAIASALDAARSL 365 Query: 364 SPHGEGRRIAVLG-----DMCEMGELSQ 386 + GR IAVLG D + G + Q Sbjct: 366 AD--SGRLIAVLGAGGDRDAVKRGPMGQ 391 >gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] Length = 508 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 51/385 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNTDMVASIGSLS 82 + GI+ +S+ I + F AIKG DGH +I A+ A +++ + + + + Sbjct: 28 IRGIAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKAAIIIYDNSADKNFIKELEDKH 87 Query: 83 IPVFGVDDVLGALNKLA-VAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 V+ + V LA ++A+ K IAITG+ GKTTT +L L + K Sbjct: 88 TYVYFI-AVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKSVLEANKNKT 146 Query: 138 ACIGSYNNHIGVPLTLARM--PVDVDF-GIFELGMSHLGEIRFLTHLVRP---------- 184 A IG+ N IG + P +D IF+ + + ++H+V Sbjct: 147 ALIGTIKNMIGKTEIKTNLTTPESIDLENIFDKALK-----KEVSHIVMEASSQALAMDR 201 Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFEL 234 A+ T I HL ++ AK ++F L+++ +N D F+ Sbjct: 202 CDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTDNFKQ 261 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMA 293 + LGIK + ++G ++ AD+ + S+ + E +GK + V +G Sbjct: 262 ISNYIKKLGIKMV-TYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNI 320 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPA 351 N L L VS D++ +IKA+ K R+ + F +D Y+ P Sbjct: 321 LNSLSVLAYVSEYKLDIEKSIKAMR----KVQVAGRFEIVTKEKHPFIAAVD--YSHTPD 374 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 S++ + +++P R I V G Sbjct: 375 SLENILKEARKLNPK---RVIVVFG 396 >gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 445 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 36/202 (17%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNN 145 VLG + LA R +IAITGS GKTT ++ Y CI Sbjct: 94 VLGDIELLADIVNRRGD-KVIAITGSNGKTTVTSLVG---------YLCIKCGLDTVIAG 143 Query: 146 HIGVPLTLA---RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IG P+ A R + EL L T +RP A + I+ HL + Sbjct: 144 NIGTPVLEAEWQREGKKAGVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRYDD 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 + + A KA+IF G G LN DD F +K + + F ADF L Sbjct: 200 LLDYAHTKAKIFRG---DGVQVLNADDVFCRAMKRAG-----REVKWFSLEHEADFWLER 251 Query: 262 ---KWKQCSEQ--SWMEVQLQG 278 + KQ E + ++ LQG Sbjct: 252 ETGRLKQGDEDLIATQDIPLQG 273 >gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str. Lens] gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str. Lens] Length = 469 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 141/353 (39%), Gaps = 46/353 (13%) Query: 63 KGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA +VV N + + L IPV + + A+ A L IAI G+ Sbjct: 73 KGADVVVRSSAVDFNNPEIVAARELMIPV---------IPRAAMLAELMRFRHGIAIAGT 123 Query: 117 VGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT +++ +A + ++ IG N G L + + + E S + Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSF-VIGGKLNSCGANAQLGKSA----YFVVEADES---D 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYDDSFF 232 FL ++P +AV+T I H+ + G E++ + E L G + D+ Sbjct: 176 ASFL--FLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEIC 233 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGY 290 +L A + ++G + A ++ W Q S V K + + G Sbjct: 234 RILPAIQ-----RPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGR 288 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYN 347 H N L ++ I + L D D+ ++ L F +G G+R++ + F +I + Y Sbjct: 289 HNVLNALASIAIATELGVDDDSIVRGLQKF---QGVGRRFQMLGEKQFEKGAAIIVDDYG 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +P + + I ++ P E R + V +QS H + LSL + Sbjct: 346 HHPQEILSTIDAFRRVWP--ERRLVHVF--QPHRYTRTQSLHRQFVDALSLSD 394 >gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] Length = 485 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/345 (22%), Positives = 139/345 (40%), Gaps = 33/345 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR++ + FFA+ G DG FI A+ GA V + + + G +P Sbjct: 22 VTGLAADSRAVKLGDLFFALAGTKTDGARFIDAAIASGA--VAIVGEHAPATG--RVPFI 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + AL A R ATI A+TG+ GKT+ + A IG+ Sbjct: 78 ATPNPRRALALAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGT---- 133 Query: 147 IGVPLTLARM---------PVDVDFGIFEL---GMSHL-------GEIRFLTHLVRPHIA 187 IGV +T +R P+++ + +L G++HL G ++ VR A Sbjct: 134 IGV-VTPSRTVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRLDGVRVRAA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ H+ + K +F L E G ++ D + ++A ++ Sbjct: 193 GFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGIAVISTDHDCSHTVIEAANARKVRV 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +S A +R + E V L+ G+ + +G +N L++ G+V Sbjct: 253 MRVGRRSDGALAGIRLVEAAIEDFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVI 312 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +D D AL H + RG+ + G +D ++ + Sbjct: 313 GTGSDPDQVFAALE--HLEGARGRLELVGEHNGAPVFVDYAHKPD 355 >gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 438 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQFAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414 >gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] Length = 495 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 30 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 469 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 49/363 (13%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + +A + + T+ IG LT A + G + + Sbjct: 108 IAIAGTHGKTTTTSLTASILAAAGLDPTFV--------IGGKLTAAGTNARLGKGSYIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AV+T I H+ + +E++ A + + G FL Sbjct: 160 EADESDASFL--YLTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI 217 Query: 228 DDSFFELLK---AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQG---K 279 D + +K HA ++G +AD + Q V +L+G + Sbjct: 218 DSEHVRAILPRISKPHA-------TYGLDDSADIYATDVESIGAQMKFTVHARLKGHEPR 270 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALN 335 + +VV + G H N L +G+ D + + L F G G+R++ L Sbjct: 271 TFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGF---AGVGRRFQSYGEIELP 327 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 QG L+ + Y +P M A +S P +R+ VL ++ D ++V Sbjct: 328 QGGKALVVDDYGHHPVEMAATLSAARGAYPD---KRL-VLAFQPHRYTRTRDLFDDFSKV 383 Query: 396 LSLYNI---SHVWLSGFHVLALKD-ALPRSIHVH------YSETMDGLFLFIQSSLVDGD 445 L+ ++ + V+ +G L AL R++ + Y ++ L + L DGD Sbjct: 384 LNTVDVLVLTDVYAAGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGD 443 Query: 446 VVV 448 V++ Sbjct: 444 VLL 446 >gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 506 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 108/404 (26%), Positives = 164/404 (40%), Gaps = 58/404 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR IA + F + G DGH +I AV+KGA ++VV D A+ +I V Sbjct: 23 VRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKGASVIVVERDEEAAQIPGTITVL 82 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ AL ++ A K I +TG+ GKTTT M+ L + K IG+ Sbjct: 83 KVESARYALALMSAALFDYPAEKLITIGLTGTKGKTTTTYMIKNVLEAAGKKVGLIGTIG 142 Query: 145 NHIG---VP--------LTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG +P L RM ++ + E+ L R T + V Sbjct: 143 AMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVMEVSSQGLKMDR--TAGIMFDYGV 200 Query: 189 ITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++P H+ + + EE K+ +F K G LN DD E + A +H Sbjct: 201 FTNLSPDHIGPNEHASFEEYLECKSMLFRQC-KIG--ILNADDEHSEAV-AANHTC---E 253 Query: 247 IYSFGKSKN--------------ADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYH 291 I+SFG N AD K + + M ++G E H G Sbjct: 254 IHSFGVEDNNEKTFLGKPLDLVAADLGFIKE---NGKLGMYFHVKGCMDCEARVHIPGRF 310 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L+T+ +V L D AI L + + +G+ +++ ++ +ID Y N Sbjct: 311 SVYNSLVTM-LVCHLAGISDQAI--LDGLNKVQVKGRVEMLPVSKDYYLIID--YAHNEV 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 S ++ ++ L + P R I V G G S+ D+ EV Sbjct: 366 STRSVLTTLMEYHPK---RLICVYGG---GGNRSKLRRYDMGEV 403 >gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus degradans 2-40] gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus degradans 2-40] Length = 456 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 21/256 (8%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 KA ++ ITGS GK+T ++ +A + A G +IGVP+ DV+ + E Sbjct: 114 KAPVVGITGSNGKSTVTTLVGLAAENAGMNVAVGG----NIGVPVLDLLADADVELYVLE 169 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L ++ + +A + ++P H+ + + AK I+ G +K I N Sbjct: 170 LSSFQLESVKR----AQLDVACVLNVSPDHMDRYPSLAHYCQAKQRIYFGAKK---IVYN 222 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 +D+ L G++ Y F K + + ++ + + + Q V Sbjct: 223 LEDT----LTIPPVMAGVER-YGFSSKKAVEENEKHVLLNNDTNALSLNGQ-DVFSVADI 276 Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 I G H +N L L I +AL F EG R + N+ T I++S Sbjct: 277 KIAGAHNLKNALAALAICDAANIPFAGLKQALQEF---EGLPHRCQWVANKNGVTYINDS 333 Query: 346 YNANPASMKAAISVLS 361 N S +AAI L+ Sbjct: 334 KATNIGSAQAAIEGLA 349 >gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM 30120] gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM 30120] Length = 472 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 68/326 (20%) Query: 63 KGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + A + L IPV ++L L R R IA+ G+ Sbjct: 62 ENASVVVVSTAISAENPEIQAAKELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M I YA G P V+ G+ + +H LG Sbjct: 113 HGKTTTTAM-------ISGIYAQAGL-------------DPTFVNGGLVKSAGTHARLGS 152 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +AV+T I H+ + G E + L G Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGR 211 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281 + DD L K +G + I ++G S++AD ++ K++Q Q + + +G + Sbjct: 212 AVMCIDDPVIRSLLPK---IG-RYITTYGFSEDADVRITKYEQKGNQGFFTIAREGMPEL 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335 VV + G H A N + + + D + AL F +G G+R+ N Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEF---QGTGRRFDFLGNYALRNV 324 Query: 336 ---QGFFTLIDESYNANPASMKAAIS 358 +G L+D+ Y +P + A I Sbjct: 325 NGKEGDVMLVDD-YGHHPTEVDATIK 349 >gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] Length = 499 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 34 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 94 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153 >gi|221141545|ref|ZP_03566038.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|269941218|emb|CBI49606.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus aureus subsp. aureus TW20] gi|302751566|gb|ADL65743.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329314414|gb|AEB88827.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus T0131] Length = 437 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae] Length = 495 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 30 LELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia J2315] gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia J2315] Length = 465 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D AL+ F+ R +RY + + G +TLID Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKVARNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 457 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D+ + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 374 >gi|330973391|gb|EGH73457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 137 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 9/66 (13%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEV 395 +ID++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G+ ++ H ++ +V Sbjct: 13 VIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAHAAGKV 68 Query: 396 LSLYNI 401 +LY + Sbjct: 69 SALYAV 74 >gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] Length = 515 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 86/392 (21%), Positives = 150/392 (38%), Gaps = 76/392 (19%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88 D+RS+ +AFFA D FI A+++GA V+V + + + +L++P Sbjct: 34 DTRSLTAGDAFFAYAVDGADNRAFIDGALERGAAAVLVQPEGFSGAIDASTTLAVP---- 89 Query: 89 DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ALN+LA +A+ + + +TG+ GKT+ + ++ AL+++ K A IG+ Sbjct: 90 -----ALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGKRCAIIGT 144 Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184 H G P + D G + M H G + Sbjct: 145 LGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAF---- 200 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV T + HL E +AKA +F E + +N DD+ L A + Sbjct: 201 DIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQ---- 255 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-------AQNML 297 G ++ + L +Q + Q+ + L ++ G +H+ A+ + Sbjct: 256 ------GHARTIAYGLDSAQQSAPQA--DASLLASNVRATPTGTAFHLSTSDWGNAEVEV 307 Query: 298 MTLGIVSILTADV------------DTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDE 344 TLG ++ D A+ L+ GR +R L N +ID Sbjct: 308 QTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVID- 366 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P +++ + L ++ G I + G Sbjct: 367 -YAHTPDALEKTLEALRPMAAARGGELICMFG 397 >gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704] gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704] Length = 487 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 35/268 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI+G+ GKTTT ML+ L + G + I V L + ++ G EL ++ Sbjct: 142 IAISGTHGKTTTTSMLSHILLA--------GEMDPTISVGGILKAIGGNIKVGKSELFVT 193 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 E P I+VI I HL F +++I S+ + + L K GT+ +N + Sbjct: 194 EACEYTNSFLHFFPKISVILNIDEDHLDFFKDLDDIRSSFHKFAKLLPKDGTLIINGN-- 251 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-- 288 + L + L + I +G + D+ S + +L S ++V G+ Sbjct: 252 -IDKLDCITKGLDCRII-KYGDDSSMDY--------SATNISHNKLGEASFDLVKAGVFV 301 Query: 289 --------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L + + +L +D K L F G +R+ T Sbjct: 302 DRISLSVNGDHNVSNALAAIAVSDLLGVSLDKMKKGLKEF---TGTNRRFEYKGEMDGVT 358 Query: 341 LIDESYNANPASMKAAISVLSQISPHGE 368 +ID+ Y +P + A ++ ++ PH E Sbjct: 359 IIDD-YAHHPTEINATLTA-AKYYPHRE 384 >gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] Length = 486 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 38/362 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR + F AI G +GH++I A++ GA +V + +S V Sbjct: 23 ITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSGANAIVCEQLPQQPLPDVSYIVV 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------TIALS 131 AL K T++ +TG+ GKTT +L T+A+ Sbjct: 83 PNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVY 142 Query: 132 SIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + + + + + L M V + E+ + + R T ++ + T Sbjct: 143 VDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHR--TEGLQFAGGIFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHALGIKT 246 + HL K F+ L T +N DD + KA+ +KT Sbjct: 201 NLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNTKAQKKTYALKT 260 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +AD++ E + + L+ EV IG A N+L ++L Sbjct: 261 --------HADYK----AYIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVYATATLL 308 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D + +S P GR + A G T++D Y P +++ + ++ I H Sbjct: 309 GIDELETLTLISAIEPVAGRFQYAVSAT--GVITIVD--YAHTPDALENVLKTINDIRTH 364 Query: 367 GE 368 E Sbjct: 365 NE 366 >gi|304380665|ref|ZP_07363336.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340772|gb|EFM06701.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 444 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 89 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 140 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 183 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 184 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 235 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 236 IYAQNIQIMDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 295 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 296 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 350 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 351 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 378 >gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 512 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN + DSRS++P + F + G DGH F AV +GA + V + + +P Sbjct: 30 VNRVVFDSRSVSPGDIFTCVPGGRTDGHGFARDAVDRGAVALCV----ARPLAEVQVPQL 85 Query: 87 GVDDVLGALNKLAVA-----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 D + +LA AR +I ITG+ GKTT+ M+ L + +G Sbjct: 86 VSRDPRAFMGRLAATLYGWPAR---DLKMIGITGTNGKTTSTYMMGSILEAQGTRTGLLG 142 Query: 142 S 142 + Sbjct: 143 T 143 >gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1] gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1] Length = 898 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 100/267 (37%), Gaps = 26/267 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALS--SIKKTYACI-GSYNNHIGV-------PLTLARM 156 + + ++TG+ GKTTT ML + + C G Y N V PL+ + Sbjct: 479 RVPVFSVTGTNGKTTTARMLEFVMRRHGLYTGICCTDGIYFNGQQVKKGDLTGPLSARTV 538 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE---EIASAKAEI 213 D + L + G IR R +AVIT I HL GIE ++A K+ + Sbjct: 539 LAHPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLGQ-DGIETLDDLAHVKSLV 597 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHAL---------GIKTIYSFGKSKNADFQLRKWK 264 E + G + LN D+ L A+ A I + GK A F R Sbjct: 598 AEAVYPAGCVVLNADEPHVNELAARVWAEVIYVSMQSDNIVVRHHLGKGGRAVFVRRGLV 657 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + +S V H G H +N+L L A L F + Sbjct: 658 LAAHGSGVVPVGRVRSFVVTHGGRALHQVENLLGALAACWGFGLSPRQAAAYLRTFAAQP 717 Query: 325 GRGKRYRCALNQ--GFFTLIDESYNAN 349 G RC L Q L+D +NA+ Sbjct: 718 GDNP-GRCNLYQVGDIRVLVDYGHNAD 743 >gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus capitis SK14] gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus capitis SK14] Length = 449 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A II +TG+ GKTT +T + + K G + +IG + V D Sbjct: 107 LISEAPIIGVTGTNGKTT----VTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEVKAD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L +PHIA+IT I AHL +E +AK +I++ + Sbjct: 161 --EYLITELSSFQLLGIDEYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LK+K+ Sbjct: 219 LICNYHQRHLIETENLKSKT 238 >gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 505 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 50/386 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P + GI S S+ P + F + G DGHD++ A+Q+G ++ + G S Sbjct: 22 PDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEAIQRGCAALMAEKKVERLEG--S 79 Query: 83 IPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IP V D A+ LA A + +I +TG+ GKTTT M+ I Sbjct: 80 IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVTGTNGKTTTTHMIEHIFHHTGHKTGLI 139 Query: 141 GSYNNHIG---------VPLT------LARMP-VDVDFGIFELGMSH---LGEIRFLTHL 181 G+ + +G P + L RM + + + E+ SH +G +R Sbjct: 140 GTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKYAVLEVS-SHALRMGRVRGCNF- 197 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-GTI----FLNYDDSFFELLK 236 AV T ++ HL S +++ K+ +F L + G++ LN DD F + L Sbjct: 198 ---KTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYGSLPKVAILNADDPFSKKLA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQ 294 AK+ A + +G + +D + + + E + W++ L + + + +G Sbjct: 255 AKTSA----QVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGSTWIHL--NVVGIFNVY 308 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + ++ + L F +GR + Q F ++D Y NP ++ Sbjct: 309 NALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIETG--QDFQVIVD--YAHNPDGLE 364 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCE 380 IS I+ +G+ IA++G CE Sbjct: 365 KVISTARAIT---KGKIIALIG--CE 385 >gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens str. 13] Length = 466 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 168 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 169 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 224 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 225 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 277 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D+ + LS F G KR+ Sbjct: 278 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 330 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 331 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 383 >gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora setae KM-6054] Length = 468 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 32/308 (10%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ +PV D L AL + R +A+ G+ GKTTT ML ++L Sbjct: 82 NPELVAAR-ERGVPVVHRSDALAAL----MGGR-----RALAVAGTHGKTTTTSMLAVSL 131 Query: 131 SSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + +YA G + P + A G E+ ++ E H P +A+ Sbjct: 132 GELGLEPSYAIGGDLD----APGSNAH------HGAGEIFVAEADESDRSFHKYAPEVAI 181 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTI 247 + + H +N++ IEEI + ++ GT+ ++ D + EL + + G+ + Sbjct: 182 VLNVELDHHANYASIEEIHQSFETFVGRIQPGGTLVVSADHEGARELTRRVAGRAGLNVV 241 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G +++AD ++ S + V+L G+ + G H A N + L L Sbjct: 242 -TVGAAEDADVRVLAVAAHGMTSEVTVELGGERLVFTVSVPGRHYAHNAVAALAAGVALG 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISVLSQISPH 366 + KAL + G R R L + T + +SY +P M A + + + + Sbjct: 301 VPAEGLAKALGAY-----TGVRRRLQLKGEARGTQVIDSYAHHPTEMAADLEAIREAA-- 353 Query: 367 GEGRRIAV 374 G GR + V Sbjct: 354 GAGRVLVV 361 >gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] Length = 512 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc gasicomitatum LMG 18811] Length = 448 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 28/193 (14%) Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIAL 130 T +V L IP+ L ++AVA L S + +IA+TGS GKTTT ++ L Sbjct: 84 TALVKQAKKLKIPI---------LTEVAVA--LSSFEGRLIAVTGSNGKTTTTSLIRDML 132 Query: 131 SSIKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 S + G +IG+P+ + + D D + EL L T +RP IA+ Sbjct: 133 KSDGQKVTTAG----NIGIPVCEVIKDLTAD-DTLLLELSSFQL----MGTPDIRPDIAL 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I HL E +AK ++ + + LN D + K+HA + Sbjct: 184 ITNIFANHLDYHGTRENYVAAKFQLTKNQTSNQLLVLNADGQDTDEFIKKTHA----KVV 239 Query: 249 SFGKSKNADFQLR 261 +F + KN D+ +R Sbjct: 240 AFSRIKN-DYTVR 251 >gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str. 13] Length = 435 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 60/295 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 92 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 137 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 138 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 193 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 194 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 246 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D+ + LS F G KR+ Sbjct: 247 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADSIVSGLSSFG---GAHKRFEY 299 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDM 378 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 300 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDF 353 >gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] Length = 509 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 44 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 103 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 104 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 163 >gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591] gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591] Length = 486 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M+T YA G P V+ G+ + + Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD+ L K +G + I ++G S +AD ++ ++Q Q + Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSDDADVRVADYRQVGAQGLFTLAR 276 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 QGK + V + G H A N + + + D + ++AL+ F +G G+R+ Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEQGIDDEAILRALARF---QGTGRRF 328 >gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] Length = 486 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + F I G +DGH FI ++KGA ++VV D+ A G + V DD Sbjct: 29 DSRKVEENSVFVCISGAAFDGHKFIGQVIEKGAKVIVVQQDVEAPKG---VTVIRFDDTR 85 Query: 93 GALNKLAVA 101 AL +++ A Sbjct: 86 KALAEMSAA 94 >gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus VCS1703A] gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus VCS1703A] Length = 478 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 24/257 (9%) Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L++P I+++T I HL N++G E + + L G L DD+ + + Sbjct: 183 LLQPMISIVTNIDADHLENYNGSYETLKAGFVRFLHNLPFYGLAVLCIDDAGVRSILPE- 241 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNML 297 +G + + ++G S++AD + +Q +V + + V + G H N L Sbjct: 242 --VG-RPVRTYGFSEDADVRAINVRQKGLAMHFDVIAHDEDRCFSVTLNMAGKHNVLNAL 298 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASM 353 + + L D +T I+ L+ F +G +R+ R A + GF + E Y +P + Sbjct: 299 AAIIVGEELGIDRETIIEGLAQF---KGVARRFTHHGRIAHDHGFADVF-EDYGHHPREI 354 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410 KA VL GRRI + ++ D AEVL++ + ++ V+ +G Sbjct: 355 KA---VLDAAMEGFAGRRIVAVFQPHRFTR-TRDLLDDFAEVLAVCDCLVLTEVYAAGEE 410 Query: 411 VLALKDA--LPRSIHVH 425 +A DA L R+I H Sbjct: 411 PIAGADARDLTRAIRAH 427 >gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae O395] gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] Length = 512 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA LV+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|330895231|gb|EGH27569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 161 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 9/66 (13%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-----AEV 395 +ID++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G+ ++ H ++ +V Sbjct: 37 VIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAAGKV 92 Query: 396 LSLYNI 401 +LY + Sbjct: 93 SALYAV 98 >gi|325475430|gb|EGC78611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Treponema denticola F0402] Length = 482 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 24/146 (16%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------- 156 SKA I+A+TGS GK++T L L + YN +G +T++ + Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKL--------GYNAFLGGNITVSPLSFFEETSCD 162 Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 PV + EL L +++ L IA+IT I P HL+ + +E+ + K I+E Sbjct: 163 TPV-----VLELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYE 216 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241 +++ + N+DD + ++ ++ A Sbjct: 217 NMDEADYLICNFDDGWGKIFAEETRA 242 >gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] Length = 514 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 135/357 (37%), Gaps = 42/357 (11%) Query: 50 HYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 H DG I A++ GA V+ M A +PV G+ ++ G L Sbjct: 57 HGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRILPVDGLAELAGPLAAQWYGVPGPE 116 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGI 164 +I +TG+ GKT+ + + AL+ + A +G+ + +T P + Sbjct: 117 ALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGTLGTGFVDALAVTGFTTPDAIQL-Q 175 Query: 165 FELGMSHLGEIRFLTHLVRPH-------------IAVITTIAPAHLSNFSGIEEIASAKA 211 L H R + V H IAV T + HL + E AKA Sbjct: 176 RSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDIAVFTNLTQDHLDYHGTMAEYELAKA 235 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQS 270 +F G +N DD+ L + A I+TI Y A ++W + S Sbjct: 236 RLF-GWPGLRAAVINRDDAAGVRLLQNARA-DIETIEYGIDGEAAAQHGAKQWLRASN-- 291 Query: 271 WMEVQLQGKSMEV--------VHHG-IGYHMAQNMLMTLGIVSILTADV--DTAIKALSV 319 + G + +V VH +G N+L LG ++LTA V AI L Sbjct: 292 -VRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG--ALLTAGVPWPDAIAHLEK 348 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 P GR +R+ G ++D Y P +++ + L+ I+ G+ AV G Sbjct: 349 LQPVSGRMERF--GGEDGPLVVVD--YAHTPDALEQTLRALAPITEARGGKLWAVFG 401 >gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis z3032] gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis z3032] Length = 488 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M +SSI YA G P V+ G+ + + Sbjct: 122 IAVAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGNSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S++AD ++ ++Q Q + Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVENYRQTGAQGHFTLVR 276 Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 Q K + V + G H A N + + + + + ++AL F +G G+R+ Sbjct: 277 QDKPELRVTLNAPGRHNALNAAAAVSVATEEGIEDEAILRALESF---QGTGRRF 328 >gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] Length = 498 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 88/384 (22%), Positives = 155/384 (40%), Gaps = 35/384 (9%) Query: 18 SIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++G+ QG + G+++DSR + P F A+ G G FI A+ + AG ++ + + Sbjct: 15 TLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTDAE 74 Query: 74 MVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEM 125 + + + +D L + A R T++A+TG+ GKT+ T+++ Sbjct: 75 GARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTRQI 134 Query: 126 L------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEI 175 + L + A + P+TL R+ + G+ + M SH + Sbjct: 135 WYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGLDQ 194 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFEL 234 R L +V T HL E AK +F L G +N DD L Sbjct: 195 RRLDGMVL-SAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGPL 253 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHM 292 + + G + I G ++ + +LR Q + + E++ QG+S + IG Sbjct: 254 VAQIAEERGQEVI---GVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQ 310 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A+N+L+ G+ +D AL GR + + G +D Y P + Sbjct: 311 AENVLLAAGLAIGSGSDPAEVFAALGHLQTVRGR-MQLAATRDNGATVFVD--YAHTPDA 367 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + A+ L PH GR +A++G Sbjct: 368 VATAVEAL---RPHVIGRIVAIVG 388 >gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 463 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 96/448 (21%), Positives = 173/448 (38%), Gaps = 78/448 (17%) Query: 44 FAIKGPHYDGHDFILHAVQKGAGLVVVNT--------DMVASIGSLS------------- 82 F I G D I H KGA + + T D+V +++ Sbjct: 36 FTISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEEYKEAIRR 95 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV +LG + + + IA++G+ GKTTT ML+ L + G Sbjct: 96 NIPVMKRATLLGQM--------MHNYQNAIAVSGTHGKTTTTSMLSYILLA--------G 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSN 199 + + I V L + ++ G E ++ E FL P I++I I H+ Sbjct: 140 NTDPTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--PKISIILNIEEDHMDF 197 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKN 255 F +++I + E L G + +N + D + LKA+ G++ +KN Sbjct: 198 FKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYATFGLENDSYDYCAKN 257 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAI 314 + + + +G+ ++ + + G H +N L + + DVDT Sbjct: 258 IGY------DAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMK 311 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISP 365 K L F G +R+ FT++D+ Y +P ++A + P Sbjct: 312 KGLLGF---TGAKRRFELKGTCNDFTVVDD-YAHHPTEIRATLESAKNYPHNELWCVFQP 367 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421 H R IA L D + LS H+ + ++ + + +G +++ KD + R Sbjct: 368 HTYSRTIAFLDDFAKA--LSLCDHVIVTDIYA----AREKDTG--IVSSKDIVDRMADYD 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + VHY + D + FI + D+++ Sbjct: 420 VDVHYIKEFDDIEKFILKNCKKNDLLIT 447 >gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 484 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 29/218 (13%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S +S + Q+ F +G +D H +I A+ GA ++ + S S+PVF Sbjct: 22 STNSEHVQCQDVFVCREGTSHDSHRYIESAITNGAVAIIATKPI-----SASVPVFVTGS 76 Query: 91 VLGALNKLAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY---- 143 +L L + A + K I ITG+ GKTT L L + K+ A IG+ Sbjct: 77 YYQSL--LLIKAFYQYPHKKIRHIGITGTNGKTTVAHGLNQVLKT-KRQSAYIGTLGVEY 133 Query: 144 -------NNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 +N +TL + D V + EL L + R V + VIT Sbjct: 134 AGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMELSSHALVQDR--AGFVPLSVGVITN 191 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 I HL ++ AK +I + ++ GT +N DD Sbjct: 192 IGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAVINLDD 229 >gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp. HGF2] gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp. HGF2] Length = 437 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 7/145 (4%) Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V+ + L ++ + R +K A+TG+ GKTT ML +K + I + N Sbjct: 81 YFVEHKVKILTEVEIGYRYATKFKYGAVTGTNGKTTITTML---YEMLKYNHKAIVAGN- 136 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG PL+ + + + L +S+ ++ + H PH++V+ +AP HL +E Sbjct: 137 -IGWPLSELALAYEDEEKDVALELSNF-QLLGIEHFA-PHVSVVCNLAPDHLDYMPSVES 193 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDS 230 +K I+E + N DD+ Sbjct: 194 YYESKMRIYENCTEDDWFLRNVDDA 218 >gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 457 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 22/134 (16%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------TLARMPVD 159 S+A +IAITGS GKTTT T ++ I A + +IG+P+ T A + Sbjct: 110 SQAPMIAITGSNGKTTT----TALINEILGEKAILAG---NIGIPILSVVGETQADKRLV 162 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 ++ F+L T +P I VIT I P HL +E +AK +I L++ Sbjct: 163 MEISSFQLQG---------TSFFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAANLDE 213 Query: 220 TGTIFLNYDDSFFE 233 + NYD + Sbjct: 214 QDFLVYNYDQEILQ 227 >gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 438 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 79/355 (22%), Positives = 149/355 (41%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K+ +IG+P L + + D + Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKSAGWSVGVGGNIGLP-ALMLLKQECDLYVL 157 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 EL L T +R A I + H+ + G+++ +AK ++E + Sbjct: 158 ELSSFQLET----TTSLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAK---VCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ SFG + D+ L + + + W+ V+ L + Sbjct: 211 VNSDDALTMPIRGAD-----SRCVSFG-ADVGDYHLNRQQG---EIWLRVRGEKILNTRE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ +L+ Sbjct: 262 MKIT----GKHNFTNALAALALADAVGIPRASSLKALTTF---TGLAHRFQLSLDHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSSLAQYLQGDNVRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ I + + GD+V++ S +C Sbjct: 370 FGR---DGEQLAALRPEV-----AEQTETMEQAMRIIATRVKSGDMVLL--SPAC 414 >gi|145595523|ref|YP_001159820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salinispora tropica CNB-440] gi|145304860|gb|ABP55442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinispora tropica CNB-440] Length = 448 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 78/357 (21%), Positives = 139/357 (38%), Gaps = 42/357 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A + +TGS GK+TT +++ L+++ + + +IGVP TL +P D + EL Sbjct: 111 ARTVGVTGSKGKSTTSSLISHLLAAVDQPNV----FGGNIGVP-TL-DLPA-ADLYVLEL 163 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226 ++ P +AV+T + P HL G E K + G E T+ +N Sbjct: 164 SSYQCSDLTD-----SPRVAVVTALFPEHLDAHGGEREYYRDKLNLLAHGPE---TVVVN 215 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + LG + + G W + Q V Sbjct: 216 GADPRL------AAELGDRPVVRAGTPDTTHVA----GGPDGTPWFHLGDQPLFPRAVLP 265 Query: 287 GIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G H N+ + L ++ +L DV DT A++ F +G R ++ T + Sbjct: 266 LVGRHNEGNLCVALAVLDVLGVDVLARRDTLAVAVAGF---QGLAHRLTEIVDPSGLTFV 322 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++ +P + AI +GR + V+ + G LAE + Sbjct: 323 DDTLATSPYAAMHAIDAY-------DGRALTVIVGGADRGLDYTPLRDHLAE--REITVI 373 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 V SG ++A D LP+ + ++ + L + + G V++ ++ S G +R Sbjct: 374 GVPDSGARIVAALDGLPKVRCDVTGDLVEAVRLARRVTPAGGVVLLSPAAPSYGQFR 430 >gi|42525886|ref|NP_970984.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema denticola ATCC 35405] gi|41815936|gb|AAS10865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema denticola ATCC 35405] Length = 476 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 24/146 (16%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------- 156 SKA I+A+TGS GK++T L L + YN +G +T++ + Sbjct: 111 SKAPILAVTGSKGKSSTVSALYYGLKKL--------GYNAFLGGNITVSPLSFFEETSCD 162 Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 PV + EL L +++ L IA+IT I P HL+ + +E+ + K I+E Sbjct: 163 TPV-----VLELSSWQLADLKNKKLLKP-KIAIITPIMPDHLNWYGTMEKYVADKKIIYE 216 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHA 241 +++ + N+DD + ++ ++ A Sbjct: 217 NMDEADYLICNFDDGWGKIFAEETRA 242 >gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens SM101] gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens SM101] Length = 457 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVKLIPND 215 Query: 221 GTIFLNYDD-SFFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDKKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374 >gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] Length = 499 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 90/384 (23%), Positives = 150/384 (39%), Gaps = 56/384 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G+++DSR A F A+ G G FI A+++GA V + TD + I Sbjct: 28 LISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGA--VAILTDAAGA----KIAA 81 Query: 86 FGVDDVLGAL-------NKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +++ AL LA AA L T++A+TG+ GKT+ +++ Sbjct: 82 QPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATF-------VRQ 134 Query: 136 TYACIGSYNNHIGV-----------------PLTLAR-MPVDVDFGIFELGM---SH-LG 173 + +G ++G P+TL R + + G+ M SH L Sbjct: 135 IWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGLD 194 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFF 232 + R V+ A T HL E +AKA +F L + G +N +DS Sbjct: 195 QCRL--DGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRG 252 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 ++A + A G + + S G+ D L + + + + + IG Sbjct: 253 AEMRAVAAARG-QEVISIGRGLG-DISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQ 310 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A+N+L+ G+V D L GR + + G +D Y P + Sbjct: 311 AENVLLACGLVIAGGEDPAAVFDTLPQLTTVRGR-MEHAATRDNGASVFVD--YAHTPDA 367 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + AI L PH GR +A++G Sbjct: 368 VATAIKAL---RPHVLGRLVAIVG 388 >gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] Length = 483 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 98/403 (24%), Positives = 166/403 (41%), Gaps = 52/403 (12%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 +V + GI DSR I F A++G DGH++I AV+ GA ++V+ + A Sbjct: 16 VVKEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFPV 75 Query: 81 LSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 I + + LG L A+ + K II ITG+ GKTTT ++ L S K Sbjct: 76 KYIWIKDLRRKLGVL-----ASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSDKT- 129 Query: 137 YACIGSYNNHIGVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFL 178 A IG+ IG + A P +D E GM + LG + L Sbjct: 130 -ARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRVDML 188 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFEL 234 +++ T + HL +E+ AK ++F +G EK I N DD + + Sbjct: 189 EF----DVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVI--NIDDLYGKR 242 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L ++ + S+G + + + + +E+ + S ++ +G + Sbjct: 243 LSSEFGGI------SYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVY 296 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L L I +L + D + + GR + C Q F ++D S+ + Sbjct: 297 NVLGALSIALLLGIERDIILDKIKELKGAPGRYELVNCG--QDFTVIVDYSHTGD----- 349 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 A ++L I+ +G+ I V G + +S ++AE LS Sbjct: 350 ALENILKSINELKKGKIITVFGCGGDRDPNKRSVMGEIAERLS 392 >gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp. PE36] gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp. PE36] Length = 445 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 79/317 (24%), Positives = 127/317 (40%), Gaps = 42/317 (13%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAGLVVVNTDMVA 76 GIVP + +DSR P + + Y G + +L A Q LVV +A Sbjct: 33 GIVP------VVVDSRDAPPGQDELPAQVRLYKGGLHPEILLQAKQ----LVVSPGIAIA 82 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + + GV+ V+G + AA KA IIAITGS GK+T +T + + Sbjct: 83 TPEIAAAQQHGVE-VIGDIELFVRAA----KAPIIAITGSNGKST----VTTLVGEMANA 133 Query: 137 YACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + +IG+P L L + + EL L TH ++ A + + Sbjct: 134 AGVKTAIGGNIGIPALDLLDVAEPYQLYVLELSSFQLET----THSLKAVAATVLNVTDD 189 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL + E AK I++ + TI N DD + +G ++ + + Sbjct: 190 HLDRYPDFEAYRQAKLSIYQDAQ---TIVTNRDDVLTVCATQDNRDVGKHSV----GADD 242 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD+ L + + C +W+ Q +G G H N++ L +++L A IK Sbjct: 243 ADYGLIQQQGC---TWLAYQGEGIISADDLQITGVH---NLMNALSAIALLDAAGVDRIK 296 Query: 316 ALSVFHPKEGRGKRYRC 332 L K+ G +RC Sbjct: 297 TLPGL--KQFTGLAHRC 311 >gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR + P F A+KG +DG F+ AV +GA ++ + IG++S+P Sbjct: 19 GMTSDSRKVQPGWLFAALKGSVHDGGKFVPQAVAQGAAAILSD----GGIGAVSVPHVMA 74 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 D+ AL A ++A+TG+ GK++T Sbjct: 75 DEPRRALALAAKRFYGEQPEFVVAVTGTNGKSST 108 >gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia felis URRWXCal2] gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+TG+ GK+TT +++ L+S Y G +IGVP A+ D I EL Sbjct: 107 IAVTGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALQAK--ASKDGYILELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T IAV+ I P HL + +AK++IF+ ++K +N D+ Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKDSYAAINIDNY 216 Query: 231 F 231 + Sbjct: 217 Y 217 >gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] Length = 494 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 74/328 (22%), Positives = 127/328 (38%), Gaps = 57/328 (17%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDV 91 SR+ + + F A KG D H F + + +G ++VVN ++ + + +P D Sbjct: 30 SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKGEVTQVIVP-----DT 84 Query: 92 LGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148 L + LA + + T +TG+ GKT+ M+ + + K A +G+ I Sbjct: 85 LRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQINE 144 Query: 149 --------VPLTL---ARMPVDVDFGIFELGM---SH---LGEIRFLTHLVRPHIAVITT 191 P T+ ++ VD + M SH LG +R V +AV + Sbjct: 145 EKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRG----VEFDVAVFSN 200 Query: 192 IAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + HL +E AK+ +F E L K + LN DD F + L+ + I Sbjct: 201 LTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLE----TVTPYEI 256 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++G A F + K+ LQG + YH++ + I +++ Sbjct: 257 LTYGIDNEAQFMAQNIKES---------LQGAQFDFATPFGTYHVSSPYVGKFNISNLMA 307 Query: 308 A---------DVDTAIKALSVFHPKEGR 326 A D ++ + P EGR Sbjct: 308 AMIAVWSKGIDFKDIVEVVKSLEPVEGR 335 >gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C str. JGS1495] Length = 457 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKNINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFND 374 >gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 499 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 127/336 (37%), Gaps = 34/336 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI--- 83 +N ++ S+ + FF+IKG + DGH +I A+ +GA V V + + LS Sbjct: 24 INHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGA--VAVFGTSIEELRLLSTQYS 81 Query: 84 --PVFGVDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 VDD V+ + +K+ K I +TG+ GKTT + L+ +K Sbjct: 82 HCTFLAVDDVRKVMASFSKMYF-DYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140 Query: 139 CIG-----SYNNHIGVPLTLARMPVDVDF-GIF--------ELGMSHLGEIRFLTHLVRP 184 IG S + + P VD IF E + + I V Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVED 200 Query: 185 ---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +A+ T ++ HL E K ++F+ + +N DD ++ K S Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKHA---VINIDDQ--DMGKDLSRL 255 Query: 242 L-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G K YS + A Q + S+ ++ +G+S +V G + N+L + Sbjct: 256 FEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYNIANVLAAI 315 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G ++ I L EGR + NQ Sbjct: 316 GTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQ 351 >gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002] gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002] Length = 467 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + AD Q+R + + M ++ ++V Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGLA--ADAQVRAVNVEAREGRMHFTVMREDAAPLDV 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 + G H QN L + I + L +AL+ F+ R +RY G Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSDGQAAG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 SYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM223] gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus VM223] Length = 440 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 45/352 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IAITGS GK+T + L+ L++ +G +IGVP L + +V+ + EL Sbjct: 110 VIAITGSNGKSTVTD-LSGVLANAAGVKTAVG---GNIGVP-ALDLISPEVELYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+E+ AK IF+ E T +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---TAVVNADD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + HA ++ + +FG A F + + Q E + S E+ +G Sbjct: 218 ----MQTFPDHAAHLQVV-TFGVELPAQFSVAE-HQGREYLFARDNAVLASSELSL--VG 269 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLIDESY 346 H N+L L ++ +V A+ AL K G +RC A N G +++S Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDAL-----KSYTGLTHRCQVVADNHG-IKWVNDSK 323 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N AS AA+S L EG+ ++G + + D + ++ + L Sbjct: 324 ATNVASTLAALSGLKI-----EGQLYLLVGGVGKGA--------DFTPLAPIFATLPLQL 370 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 F V K +P + ++M+ + I+ L GD+V++ S +C + Sbjct: 371 CCFGVDGDK-FMPLHPSARFYDSMESIIRSIRPELKSGDMVLL--SPACASF 419 >gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756] gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756] Length = 458 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 44/392 (11%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N +++ ++ +L IP+ ++LG L +++ T IA++G+ GKTTT M++ L Sbjct: 83 NPELIEAV-ALKIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISHIL 133 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 G + I V L + ++ G ++ E P I+VI Sbjct: 134 LE--------GDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVIL 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYS 249 I HL F +E+I + + E L + GT+ +N + + E+ + S + + Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLS-----CNVVT 240 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306 +G + D+ + E + L +G+ + + + G H N L + + IL Sbjct: 241 YGTNGCFDYSAKNITY-DENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADIL 299 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357 +D + L F G +R+ T+ID+ Y +P A++KAA Sbjct: 300 GLSIDITKRGLLSF---TGTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHSLHN 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 SV PH R A + E LS + H+ LA++ + + +S + K+ Sbjct: 356 SVWCVFQPHTYTRTKAFFHEFAEA--LSHADHLVLADIFAARETDTLGISSADL--AKET 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 HY + + F++ + GD+++ Sbjct: 412 EKLGTDTHYFPSFAQIEAFLKENCRPGDLLIT 443 >gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei K96243] gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 1710b] gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 668] gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 1106a] gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 305] gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei DM98] gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 7894] gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei NCTC 13177] gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 576] gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei MSHR346] gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1106b] gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1655] gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei S13] gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1710a] gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 406e] gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei K96243] gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1710b] gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 668] gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1106a] gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 305] gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 406e] gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei S13] gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1655] gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei 576] gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei MSHR346] gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1106b] gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei 1710a] Length = 465 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD+ + L K + +G + +A + + + V+ +G+ + VV + Sbjct: 218 DDANVRQIV----PLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR--CALNQGFFTLID 343 G H QN L + I + L D AI +AL+ F+ R +RY A G +TLID Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + DGDVV+ + Sbjct: 388 LTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] Length = 509 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 45/377 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ +S + + F + G DG DF A+ GA +V+ + + V Sbjct: 36 IKGLATNSHACQTGDLFLGMPGTRVDGGDFWKSAIANGAVGAIVSVSAATKHPAKNECVI 95 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-Y 143 V D+ ++A A K ++ ITG+ GKTTT ++ L++ + A G+ Y Sbjct: 96 PVADMSQTCPEIAAAFYDYPGQKMKMVGITGTNGKTTTTHLVEFILNNAQLPTALFGTLY 155 Query: 144 NNHIGVPLTLA---RMPVDVD------------FGIFELGMSHLGEIRFLTHLVRPHIAV 188 G T A PV++ +GI E+ L + R +AV Sbjct: 156 MRWPGFQKTAAYTTSFPVELQNQLAQALAAGSKYGIMEVSSHSLDQKRVWGCTY--EVAV 213 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +++ AKA +F G +N DD + + L A+ L + ++ Sbjct: 214 FTNLTQDHLDYHKDMDDYFEAKARLFSSDYLKGRAIVNADDPYGQKLIAR---LESEKVW 270 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHG--------IGYHMAQNMLMT 299 S+ S D W S +E + G K M G +G + NML Sbjct: 271 SYSTS---DTSTDLWA-----SDLEYKPTGVKGMLHTPKGEMIFSLPLVGQYNLSNMLAA 322 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +G L D+ + LS F GR +R + Q ++D Y P S++ ++ Sbjct: 323 VGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDVSVIVD--YAHTPDSLE---NL 377 Query: 360 LSQISPHGEGRRIAVLG 376 L P GR I V G Sbjct: 378 LKAARPFIPGRMICVFG 394 >gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] Length = 489 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 36/302 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPV 85 V+GI+ DSR++ P F + F+ AV+ GA +V + + + + + I + Sbjct: 27 VSGITADSRNVKPGFVFVCLSEV---AKKFVSDAVKAGARFIVAGSAEALPRVDNAQIII 83 Query: 86 FGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 F KLA A R R + A+TG+ GKT+ + T A IG+ Sbjct: 84 FPKQHDF--YYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASIGTLG 141 Query: 145 NHIG---VPL--TLARMP--VDVDFGIFELGMSHL----------GEIRFLTHLVRPHIA 187 +G P TL P +++ + EL SH+ G + + V+ +A Sbjct: 142 TAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVKVSVA 201 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ H G+E+ +AK ++F E L G LN D + L+ +G + Sbjct: 202 AFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELR---RLVGSRN 258 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGI 302 ++G + D +L + K + + V++ GK VV+ G +G N+L L I Sbjct: 259 TITYGINV-GDVRLTRLKSSTLGHNVAVEICGK---VVYDGAFPVLGKFQIPNLLCALAI 314 Query: 303 VS 304 V+ Sbjct: 315 VT 316 >gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis C6786] Length = 464 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 151/365 (41%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD + L K + +G + +A + + + V +G+ + VV + Sbjct: 218 DDPNVRQIV----PLISKPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344 G H QN L + I S L D AI +AL+ F+ R +RY + G +TLID+ Sbjct: 274 LPGLHNVQNALAAIAIASDLDV-ADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDD 332 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401 Y +P M A I+ P GRR+ VL ++ D VLS + + Sbjct: 333 -YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387 Query: 402 SHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------GDVVVVKS 451 + V+ +G + A DAL R++ + ++ +F+ + D GDVV+ Sbjct: 388 TEVYAAGEAPITTANGDALSRALRA--AGKVEPVFVATVDEVPDALAKVARVGDVVITMG 445 Query: 452 SNSCG 456 + S G Sbjct: 446 AGSIG 450 >gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga tractuosa DSM 4126] gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga tractuosa DSM 4126] Length = 455 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 37/230 (16%) Query: 10 LLQAIQGHSI-----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-- 62 LL +G+ + G++ +G N S+ ++ +E G H + D IL+A + Sbjct: 19 LLAKAKGYDVFVSDFGVISEG--NKASLYQAEVSFEE------GKHTE--DLILNAYKII 68 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 K G + N ++V +IPV +++L A +K IIAITG+ GK+TT Sbjct: 69 KSPG-IAPNVEIVKKALGKNIPV---------IDELEFAFGF-TKGKIIAITGTNGKSTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 MLT L +K+ +G N + ++A VD+DF + L S F+ Sbjct: 118 T-MLTYHL--LKEAGLSVGLGGN---IGKSMAGQLVDIDFDWWVLECSSFQIDGFVN--F 169 Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +PHIA++ I P HL + +E ++K +F+ K L +D Sbjct: 170 KPHIAILLNITPDHLDRYDYKVENYVASKFSLFKNQGKEDFALLYTEDKL 219 >gi|167768724|ref|ZP_02440777.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM 17241] gi|167669122|gb|EDS13252.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM 17241] Length = 489 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I ITGS GKTTT ++ L G HIG + MP+ D + ++ Sbjct: 146 IGITGSDGKTTTTTLIAEILKE--------GGRRAHIGGNIGRPLMPILRDIRDNDFAVA 197 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 L + ++ P IAV+T I+P HL ++E AK I Sbjct: 198 ELSSFQLISMRESPDIAVVTNISPNHLDVHGNMQEYIDAKRNI 240 >gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58] gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58] Length = 475 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 79/348 (22%), Positives = 136/348 (39%), Gaps = 46/348 (13%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLA 154 +A +R K+T+ A+ G+ GKTTT M+ L + + T I SY ++ A Sbjct: 101 LAELMRLKSTV-AVAGTHGKTTTTSMIAALLDAGGVDPTVINGGIINSYGSN-------A 152 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 R+ + D+ + E S +R IAV+T I P HL ++ + + A E Sbjct: 153 RLG-NSDWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFV 206 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + G L D + + + + I ++G S AD + + + +V Sbjct: 207 GNVPFYGAALLCLDHPEVQAILPRVQD---RRIVTYGFSAQADIRGENVRPVPGGNLFDV 263 Query: 275 QLQGKS------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-G 327 ++ + +++ G H N L +G+ L D F + R Sbjct: 264 LIRDRDGHVEKISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFT 323 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDM 378 K L G T+ID+ Y +P ++A ++ V++ + PH R L D+ Sbjct: 324 KVGEVQLEGGVATVIDD-YGHHPVEIRAVLAAAREGALGRVVAIVQPH----RFTRLRDL 378 Query: 379 CEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 M E Q+F+ D+ +Y + G AL L R H H Sbjct: 379 --MDEFQQAFNDADIVYAAPVYAAGEQPIEGVDSAALVAGLKRRGHRH 424 >gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella denitrificans OS217] gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella denitrificans OS217] Length = 502 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 29/236 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------MVASIGSLSI 83 +S+DSR + F A+ G DG +I A +GA +V+TD V ++GS Sbjct: 23 MSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQGAVAALVHTDDPDSHGKVENLGSGIT 82 Query: 84 PVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 P V+ + AVAA+ K +I ITG+ GKT+ +++ S + A Sbjct: 83 PWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGITGTNGKTSVSQLIAQLTSLLGGKAAV 142 Query: 140 IGSYNNHI-GVPLTLARMPVDV--------DF-----GIFELGMSHLGEIRFLTHLVRPH 185 +G+ N + G + D DF I + +S G ++ V Sbjct: 143 MGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDVKGADICAMEVSSHGLVQGRVTAVPFD 202 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKA 237 IAV T + HL + ASAK +F+ LN DD +FE L A Sbjct: 203 IAVFTNLTRDHLDYHGDMASYASAKKRLFQ-FPSLKYALLNLDDDTGAQWFEELAA 257 >gi|205374471|ref|ZP_03227267.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus coahuilensis m4-4] Length = 439 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 41/301 (13%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N + + L +PV LG K K T +A+TG+ GKT+T +L + Sbjct: 73 NHEEIERAKELGLPVIRYHKFLGEFMK---------KFTSVAVTGAHGKTSTTGLLAHVI 123 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAV 188 S K T IG + D + +FE E R FL++ P A+ Sbjct: 124 SGDKPTSYLIGD---------GTGKGTEDSQYFVFE-----ACEYRRHFLSY--HPDYAI 167 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I H F+ +E++ SA E+ L+ I DD + ++ K + Y Sbjct: 168 MTNIDFDHPDYFADVEDVFSAFQEM--ALQVNKGIIACGDDEHLQSIQTKVPVV----FY 221 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL-T 307 FG+ DFQ R + +V + ++ I + N+L LG++++ Sbjct: 222 GFGEEN--DFQARNITVDENGTTFDVFV--RNTFYASFTISTYGKHNVLNALGVIALCHY 277 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++DTA+ +G +R+ + +G +ID+ Y +P + A I Q P+ Sbjct: 278 ENIDTAV-VQERLRTHKGVKRRFTEKV-KGSQVIIDD-YAHHPTEINATIDSARQKYPNR 334 Query: 368 E 368 E Sbjct: 335 E 335 >gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens FD-1] Length = 471 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 42/329 (12%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F + + +G D I+H A ++ N +++A+ S +PV D+LG + A Sbjct: 58 FIGQRAENIEGADLIVHT----AAIMADNPELIAAKAS-GVPVLERADLLGIVTSWYSNA 112 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 I ++G+ GKT+T M+T L Y + +IG ++P Sbjct: 113 --------ICVSGTHGKTSTTSMITQIL------YTAGVDLSAYIG-----GKLPCIGGS 153 Query: 163 GIFELGMSHL---GEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 GI G S + F H ++ P I+VI I HL F +E I + + E Sbjct: 154 GI--AGKSDILVCESCEFEDHFLKFFPDISVILNIDADHLDYFGTLENIIKSFHKFNENT 211 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQL 276 K I +N D +K+ G K I +FGK + D+ K + + + Sbjct: 212 SK--CIIINGSDE--NSMKSLEGITG-KEIITFGKDSSCDYYPENVKHENGLLTTYDAMY 266 Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +G+ + + H G H N L + + A+ D K L F G +R+ Sbjct: 267 KGEKLGTITLHVAGIHNVLNSLAAVAAARYVGAEFDAIQKGLEEF---RGAKRRFEKLGF 323 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQIS 364 + T++D+ Y +P ++A ++ +++ Sbjct: 324 EKGITVVDD-YAHHPTELEATLNAAMEMN 351 >gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium botulinum B1 str. Okra] gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium botulinum B1 str. Okra] Length = 458 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 14/127 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL--TLARMPVDVDFGI 164 A + ITGS GKTTT ++ L ++ Y +G +IG PL + M D Sbjct: 117 AKVFGITGSDGKTTTTTLVYEMLK--REGYRTWVGG---NIGTPLFANIEEMKED----- 166 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + + L + +T V P I++IT ++P HL EE AK IF+ + Sbjct: 167 -HMVVLELSSFQLMTMDVSPEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSNNLLV 225 Query: 225 LNYDDSF 231 LN DD Sbjct: 226 LNKDDDL 232 >gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium acetobutylicum EA 2018] Length = 462 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165 A I +TGS GKTTT ++ L KT+ +G +IG PL V D + Sbjct: 118 AKIFGVTGSDGKTTTTTLIYNMLKEEGYKTW--VGG---NIGTPLFSKIKEVSTKDKVVL 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L +T V P +AV+T ++P HL +EE +AK IF K + + Sbjct: 173 ELSSFQL-----MTIDVSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLII 227 Query: 226 NYDDSFFELLKAKSHALG 243 N D+ + +S ALG Sbjct: 228 NRDNEITNNM--ESEALG 243 >gi|297559871|ref|YP_003678845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844319|gb|ADH66339.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 483 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 95 LNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 + + +A RL+ + +A+TG+ GKTTT ML L + + +G ++G P+ Sbjct: 110 IGDVELAWRLKPADQVWLAVTGTNGKTTTVRMLEAMLRADGRDALAVG----NVGTPVVE 165 Query: 154 ARMPVDVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A P D E+ L + + +RPH A + IAP HL G++ A AK Sbjct: 166 AVQP-DAGGRFREVLAVELSSFQLHWSSSLRPHAATVLNIAPDHLDWHGGLDPYARAKGR 224 Query: 213 IF 214 I+ Sbjct: 225 IY 226 >gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp. SIP3-4] gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp. SIP3-4] Length = 460 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%) Query: 102 ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 A+ R +++ +IAITG+ GKTT +T + + K +IG+P+ A V+ Sbjct: 103 AQFRPRSSKVIAITGANGKTT----VTTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVET 158 Query: 161 DFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D G ++ + L + T + P A + + H+ + G+ E A+AKA I +G Sbjct: 159 D-GAPDVYVLELSSFQLETTSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG--- 214 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 G LN +D++ ++ AL + + +FG Sbjct: 215 AGVQVLNREDAW-----CRNMALPDQPMVTFG 241 >gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium acetobutylicum ATCC 824] gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium acetobutylicum ATCC 824] Length = 462 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165 A I +TGS GKTTT ++ L KT+ +G +IG PL V D + Sbjct: 118 AKIFGVTGSDGKTTTTTLIYNMLKEEGYKTW--VGG---NIGTPLFSKIKEVSTKDKVVL 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L +T V P +AV+T ++P HL +EE +AK IF K + + Sbjct: 173 ELSSFQL-----MTIDVSPEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKGNVLII 227 Query: 226 NYDDSFFELLKAKSHALG 243 N D+ + +S ALG Sbjct: 228 NRDNEITNNM--ESEALG 243 >gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium ljungdahlii DSM 13528] gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium ljungdahlii DSM 13528] Length = 458 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 8/123 (6%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A I +TGS GKTTT T + ++ K +IG PL +D + + Sbjct: 117 AKIYGVTGSDGKTTT----TTLIYNMLKEQGYKSWVGGNIGAPLFSRIEEIDPEDKV--- 169 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 + L + + V P +AVIT I+P HL +EE +AK IF+ + LN Sbjct: 170 -VLELSSFQLMGMDVSPEVAVITNISPNHLDIHKDMEEYVNAKKSIFKYQGNQDVVILNR 228 Query: 228 DDS 230 D+ Sbjct: 229 DNE 231 >gi|154687119|ref|YP_001422280.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens FZB42] gi|166222954|sp|A7Z7S3|MURC_BACA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|154352970|gb|ABS75049.1| MurC [Bacillus amyloliquefaciens FZB42] Length = 432 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 119/299 (39%), Gaps = 36/299 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A K T +A+TG+ GKT+T +L + K T IG R + Sbjct: 95 AEYMKKYTSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGD---------GTGRGNESSE 145 Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +FE E R FL++ +P A++T I H F+ I+++ A + L+ Sbjct: 146 YFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFANIDDVFDAFQNM--ALQV 196 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 I DD + K HA + +Y +G + DFQ R + +E + +V ++ Sbjct: 197 NKGIIACGDDEYL----PKIHA-NVPVVY-YGTGEENDFQARNIVKNTEGTTFDVFVRNT 250 Query: 280 SMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + G+H N L + + DV+ L F G KR G Sbjct: 251 FYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNMIKLGLESF----GGVKRRFNEKVIGS 306 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 LID+ Y +P +K I Q P E IAV +QSF + AE LS Sbjct: 307 QVLIDD-YAHHPTEIKVTIEAARQKYP--EREIIAVF--QPHTFTRTQSFLDEFAESLS 360 >gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas europaea ATCC 19718] gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas europaea ATCC 19718] Length = 471 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 17/198 (8%) Query: 37 IAPQEAFFA--IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG- 93 I P EA F +K + G D I A+ G V V +V + +PV G ++ Sbjct: 49 IVPGEAIFCGPLKEELFQGIDAI--AISPG---VAVAEPLVQAALQQGVPVIGDIELFAV 103 Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 AL++ A I+AITGS GKTT M+ + + G+ + + Sbjct: 104 ALDQYAPPG-----TKILAITGSNGKTTVTSMVGEMVKNAGWDVEVAGNIG-PAALDALM 157 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 RM + ++ L +S ++ + L RP A + ++ HL + IEE A+AKA I Sbjct: 158 QRMDANKWPHLWALELSSF-QLETTSSL-RPDAATVLNLSEDHLDRYDSIEEYAAAKARI 215 Query: 214 FEGLEKTGTI-FLNYDDS 230 F G + LN DD+ Sbjct: 216 FSRPHNNGCVQILNRDDA 233 >gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter arilaitensis Re117] gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter arilaitensis Re117] Length = 509 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 10/138 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGM 169 + ITG+ GKTTT M L + +G ++G P L R PVD D EL Sbjct: 139 LVITGTNGKTTTVGMTESILRADGLKAIAVG----NVGTPILDAVREPVDYDVFAVELSS 194 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L TH + P +V+ +A H+ G E +AKA+I+E + IF D+ Sbjct: 195 FQL----HYTHTISPVASVVLNLAEDHVDWHDGFENYKAAKAKIYE-RTQIAAIFNAADE 249 Query: 230 SFFELLKAKSHALGIKTI 247 + ++++ G + I Sbjct: 250 ATIKMVEDADVVEGCRAI 267 >gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 440 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 34/255 (13%) Query: 110 IIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 II+ITG+ GK+T M+ IA S K + +G +IGVP+ L + + D I EL Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAF--LGG---NIGVPV-LEILDKEADLYIIELS 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 L T ++ IAVI I+ H++ + +G ++ + K ++ E +N Sbjct: 162 SFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---ICIINS 214 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EV 283 +D ++ K+ H+ K I SFG ++ +D+++ CS+ + + + K + E+ Sbjct: 215 ND---KIEKSLIHSKNKKWI-SFGTNR-SDYRI-----CSKSNDPILFFKNKKILNTSEI 264 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + +G YH N+L++L I + + AI L F R++ N+ I+ Sbjct: 265 LLYG--YHNYNNILVSLAISDAMQFPRNDAINVLKSF---SNLPHRFQIIKNEKGVRWIN 319 Query: 344 ESYNANPASMKAAIS 358 +S + N S + A++ Sbjct: 320 DSKSTNVNSTQVALN 334 >gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 444 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 21/158 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 MV + + IP+ ++++ A R + A +I ITGS GKTTT ++ Sbjct: 79 MVLKVKAAGIPI---------ISEIEFAGRY-THAKMICITGSNGKTTTTSLI---YHIF 125 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTI 192 KK +G N IG L L D D+ + EL L + RF R +IAV+ I Sbjct: 126 KKAGYNVGLAGN-IGQSLALQVAEKDYDYYVIELSSFQLDNMYRF-----RANIAVLLNI 179 Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229 P HL + ++ AK I + E+T DD Sbjct: 180 TPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDD 217 >gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 483 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ + + T+ IG N G + + DF I E Sbjct: 121 IAIAGTHGKTTTTSLIASIYGQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL HL +P ++VIT I H+ + G +E++ + L G + Sbjct: 176 ES---DASFL-HL-QPMVSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 D L + G + + ++G+SK+AD+++ + Q + V QG+ + + Sbjct: 231 DSEVAAELIPR---FG-RPVITYGESKDADYRMSDFSQSANTCTFTVTNKQGECLTATLN 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342 G H A N + + ++AL F EG G+R++ +G L+ Sbjct: 287 MPGRHNALNATAAIAVAKDQNIANHAILEALQKF---EGIGRRFQHYGEFENERGNVMLV 343 Query: 343 DESYNANPASMKAAISVLSQISP 365 D+ Y +P+ + A I+ + + P Sbjct: 344 DD-YGHHPSEVAATIAAVREGWP 365 >gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM 15053] gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM 15053] Length = 459 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 27/288 (9%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 IP+ ++LG L + + IA++G+ GKTTT ML+ L + G Sbjct: 94 IPMLSRAELLGQL--------MTNYDVPIAVSGTHGKTTTTSMLSHILLA--------GD 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 + I V L + ++ G L ++ E P I+VI I HL F Sbjct: 138 LDPTISVGGILKAIGGNIKVGTSGLFVTEACEYTNSFLHFFPKISVILNIDEDHLDFFKD 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +++I ++ L GT+ +N + E L+ + L + + ++G + ++ Sbjct: 198 LDDIRNSFRRFAALLPADGTLVINGE---IENLEEITAGLSCRVV-TYGTEHSMNYSASN 253 Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + ++ G+ ME V + G H N L + + IL+ + + L F Sbjct: 254 ISHNEKGDASFDLVKNGEFMERVQLSVNGDHNVSNALAAVAVADILSVPLADICRGLKEF 313 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 G +R+ + FT+ID+ Y +P +KA+++ + PH E Sbjct: 314 ---AGTNRRFEHKGEKNGFTVIDD-YAHHPTEIKASLTAAAHY-PHKE 356 >gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 503 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 114/308 (37%), Gaps = 41/308 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL +I+ ++ + GIS S + F ++G DGH ++ A Q Sbjct: 1 MMKLKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGK 119 GA +V + IP + V + AL KL AR K +I IT + GK Sbjct: 61 GAVAAIVEELQ----EDVDIPQYVVSNSRIALAKL--GARFYGDPSQKMKLIGITATNGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDF-----GIFELGMSH- 171 TTT M+ L + IG+ I T A + P +D + + G+SH Sbjct: 115 TTTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHV 174 Query: 172 ---LGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + TH V I + I+ H+ + E+ AK+ + + L Sbjct: 175 TMEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNASENSIAVL 234 Query: 226 N----YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-------------QCSE 268 N Y S + KA+ G+ + K+ D + K Q E Sbjct: 235 NLDCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQQYE 294 Query: 269 QSWMEVQL 276 S EVQL Sbjct: 295 PSEFEVQL 302 >gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens ATCC 13124] gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC 13124] Length = 466 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 123 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 168 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 169 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 224 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 225 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 277 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 278 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 330 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 331 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 383 >gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 449 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 12/141 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162 L S+A II +TG+ GKTT ++ + T G + +IG V +A+ D+ Sbjct: 107 LISEAPIIGVTGTNGKTTVTSLIGDMFQKSRVT----GKLSGNIGYVASKVAQEVTADDY 162 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L I +PHIA+IT I AHL ++ +AK +I++ + Sbjct: 163 LVTELSSFQLLGI----DQYKPHIAIITNIYSAHLDYHETLDNYQNAKKQIYKNQTENDY 218 Query: 223 IFLNYDDSFF---ELLKAKSH 240 + NY E L+AK++ Sbjct: 219 LICNYHQRHLIESETLRAKTY 239 >gi|51599068|ref|YP_073256.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia garinii PBi] gi|59798192|sp|Q65ZV7|MURC_BORGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|51573639|gb|AAU07664.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBi] Length = 468 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 28/216 (12%) Query: 54 HDFILHAVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 ++F L + + L+V ++ ++ L+IP+ +VLG L++ Sbjct: 62 YEFSLKELDRSFDLIVYSSAYDKDGLQVLLEAKELNIPILSYSEVLGELSR--------- 112 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K I I GS GKTTT L I + +GS G +A GI Sbjct: 113 KHYSIGIAGSHGKTTTTAFLGILFDKLGLNPNVIVGSSVKDFGDNSAIA--------GIS 164 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 ++ + E + P++ ++T + H+ F E + A + L+K G + + Sbjct: 165 DIFIVETCEYKKHFLYFSPNMLILTNVDYEHVDFFKNYEALEDAFLQYINNLKKNGILII 224 Query: 226 NYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQL 260 N DD LLK KS I+SFG ++FQ+ Sbjct: 225 NSDDK--NLLKIKSQINREDINIFSFGSRDLSNFQI 258 >gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9) [imported] - Buchnera sp. (strain APS) gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 440 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 34/255 (13%) Query: 110 IIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 II+ITG+ GK+T M+ IA S K + +IGVP+ L + + D I EL Sbjct: 108 IISITGTNGKSTVATMIEKIAKKSGYKAF-----LGGNIGVPV-LEILDKEADLYIIELS 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 L T ++ IAVI I+ H++ + +G ++ + K ++ E +N Sbjct: 162 SFQLEN----TFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAE---ICIINS 214 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----EV 283 +D ++ K+ H+ K I SFG ++ +D+++ CS+ + + + K + E+ Sbjct: 215 ND---KIEKSLIHSKNKKWI-SFGTNR-SDYRI-----CSKSNDPILFFKNKKILNTSEI 264 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + +G YH N+L++L I + + AI L F R++ N+ I+ Sbjct: 265 LLYG--YHNYNNILVSLAISDAMQFPRNDAINVLKSF---SNLPHRFQIIKNEKGVRWIN 319 Query: 344 ESYNANPASMKAAIS 358 +S + N S + A++ Sbjct: 320 DSKSTNVNSTQVALN 334 >gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12] gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12] Length = 469 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 156/377 (41%), Gaps = 61/377 (16%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N GV L + G + + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGVNAKLGQ-------GEYIVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L P +AV+T I H+ + + A + L G L Sbjct: 160 EADESDASFLNLL--PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCV 217 Query: 228 DDSFFELLKAKSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ------L 276 DD+ GI K I S+G +++A Q+R +E + M + Sbjct: 218 DDAAVR---------GIMPFVSKPITSYGFAEDA--QVRAIDVRAEGAQMHFTVLRRNGV 266 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR---- 331 Q + V + G H QN L + + + L D D AI +AL+ F G G+R++ Sbjct: 267 QLPPLAVTLNLPGRHNVQNALAAIAVATELNVD-DAAIQRALAGF---TGVGRRFQRYGE 322 Query: 332 -CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 A + G FTLID+ Y +P M A ++ P GRR+ VL ++ Sbjct: 323 VAAHHGGHFTLIDD-YGHHPVEMAATLAAARGAFP---GRRL-VLAFQPHRYTRTRDLFE 377 Query: 391 DLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQS 439 D +VL + ++ V+ +G L D +L R++ V + E + L I Sbjct: 378 DFVKVLGEADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILE 437 Query: 440 SLVDGDVVVVKSSNSCG 456 +GDV++ + S G Sbjct: 438 MAREGDVLICMGAGSIG 454 >gi|256027427|ref|ZP_05441261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp. D11] gi|289765390|ref|ZP_06524768.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11] gi|289716945|gb|EFD80957.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11] Length = 432 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 23/253 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIF 165 K IIAITG+ GK+TT T +S + +Y +IG L+ + D+DF Sbjct: 90 KTKIIAITGTNGKSTT----TAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFISL 145 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L I +P+I++I + P H+ + +E K I + + Sbjct: 146 ELSSFQLENIENF----KPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD E ++ + K I S K K AD + K + + + + S++ Sbjct: 202 NIDDVEIE---KRAKQVKAKRI-SVSKFKKADIFVENDKIYHGKDSI-IDVDKLSLK--- 253 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H +N L + IL D + + L + P E R + + G I++S Sbjct: 254 ---GIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF---FTYGKLKFINDS 307 Query: 346 YNANPASMKAAIS 358 N S K AI Sbjct: 308 KATNVDSTKFAIE 320 >gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 466 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 21/203 (10%) Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKT 136 G L++PV D L +L LR+ IA+ G+ GKTTT ML +ALSS+ + Sbjct: 90 GELAVPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLGLAPS 140 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 YA G P T + G ++ ++ E P +A++ + H Sbjct: 141 YAIGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDH 190 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 +N++ ++EI + + GT+ ++ D L + L + ++G +++A Sbjct: 191 HANYASMDEIYDSFETFVGKIVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDA 250 Query: 257 DFQLRKWKQCSEQSWMEVQLQGK 279 D ++ K S + V L GK Sbjct: 251 DVRVHKVTPRGLTSEVTVLLNGK 273 >gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] Length = 496 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 153/384 (39%), Gaps = 46/384 (11%) Query: 22 VPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVA 76 +PQ ++G+ +DSR + P +AF A+ G FI A +GA ++ Sbjct: 14 IPQARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFEPPAPQGV 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLR---SKA-TIIAITGSVGKTTTKEMLTIALSS 132 S+ +I V G+ LGA+ A R S+A T++ +TG+ GKT+T ++L A Sbjct: 74 SVPDGAIAVHGLRARLGAM-----ADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHR 128 Query: 133 IK-KTYAC----IGSYNNHI-----GVPL------TLARMPVDVDFGI-FELGMSHLGEI 175 + ++ C +G Y+ + PL L ++ D + E+ L + Sbjct: 129 LGVRSATCGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHALDQG 188 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFE 233 R V + V T + HL +E +AKA +F +G++ +N DD F Sbjct: 189 R--VDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAA---VINVDD-LFG 242 Query: 234 LLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L A G++ + S +AD + + ++ + V +G Sbjct: 243 LRLLHGLAKGVRRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 302 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L G++ L + LS P GR R Q + Y P + Sbjct: 303 VDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVV---DYAHTPDA 359 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + VLS +S H GR I V G Sbjct: 360 LG---QVLSSLSSHVCGRLICVFG 380 >gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 315 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 27/227 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++ SR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R P+ V + +L + R + V H Sbjct: 135 TLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAG---ARAVAMEVSSHGLDQGRATALAF 191 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + V+T ++ HL +E A+AKA++F +N DD+F Sbjct: 192 DVGVLTNLSRDHLDYHGTMEAYAAAKAKLF-AWSNLKCRVINLDDAF 237 >gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] Length = 478 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 58/385 (15%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++L I + G +G+ DSR + + F A++G +DGH FI AV+ GA V Sbjct: 3 EILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAV 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKE 124 + + ++ + I V + LG +A+ + K I+ ITG+ GKTTT Sbjct: 63 IGSKEIEVNHDITYIVVKNLRQKLG-----VIASNFYKWPQKKLEIVGITGTNGKTTTTY 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV---DVDFGIFELGM--- 169 +L L K + IG+ +G P +L + + VD GI L M Sbjct: 118 LLEQILGEDK--VSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEVS 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 SH E+ + ++ + T + P HL +EE SAK ++F + N DD Sbjct: 176 SHALEMGRV-EMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVFNTDD 234 Query: 230 SFFELL---------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + L +S L I K++ + +++ Q + ++LQGK Sbjct: 235 FYGKRLFDEFGGISYGIESGDLNASMISHSLKTQEIELSFKEF-----QKKINIKLQGK- 288 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFF 339 N+L +G+ L ++ L G R+ C Q F Sbjct: 289 ----------FNVYNLLTAVGVAIRLGLSLEEITDRLEKLESAPG---RFECIEAGQNFM 335 Query: 340 TLIDESYNANPASMKAAISVLSQIS 364 ++D ++ A+ +++ +S L++I Sbjct: 336 VVVDYAHTAD--ALENILSALNEIK 358 >gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 512 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 82/382 (21%), Positives = 149/382 (39%), Gaps = 50/382 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN------TDMVASIGS 80 + +S+DSR + AF A+KG DG+ +I + KG L++ + + +S+ Sbjct: 23 IESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGTKLILSDKLPRQSSIATSSVAE 82 Query: 81 LSIP-VFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 +P +F V+++ L+ LA + II ITG+ GKT+ + I + Sbjct: 83 GELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTNGKTSISSYIAQLQKLIGQKSL 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------- 185 +G+ N I P +D +S+ + L V H Sbjct: 143 LLGTNGNGI-YPDLQESTHTTLDILSLYQTISYYKNYQNLVMEVSSHSLDQKRTEGLDFD 201 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----- 240 IAV + ++ HL ++ AKA++F+ +N DD + + L ++ Sbjct: 202 IAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ-FRSLKKAVINIDDEYGQKLWENTNKSSFR 260 Query: 241 ------------ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 I+ I KS+ AD + + Q+ ++ + K M + Sbjct: 261 QAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSIENMQTSFDLYISQKYMGTYQTSL 320 Query: 289 GYHMAQNMLMTLGIVSILTADVDTA---IKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + LM LG+ D T ++ +S P +GR + AL G +ID Sbjct: 321 ---VGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKGRME--VIALVNGAKIIID-- 373 Query: 346 YNANPASMKAAISVLSQISPHG 367 Y P +++ A+ L P+ Sbjct: 374 YAHTPDALEKALQTLVNYHPNN 395 >gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptothrix cholodnii SP-6] gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii SP-6] Length = 513 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 94/389 (24%), Positives = 149/389 (38%), Gaps = 55/389 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSRS+ EAF A G DG ++ A+ GA ++ D A+ FG D Sbjct: 26 LRTDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAAA--------FGFD 77 Query: 90 D-VLGALNKLAVA---------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 D + AL L A + +IA +G+ GKT+T ALS + Sbjct: 78 DERIAALPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGV 137 Query: 140 IGSYN--------------NHIGV----PLTLARMP---VDVDFGIFELGMSHLGEIRFL 178 IG+ + G+ PLTL R D F + S +G + Sbjct: 138 IGTLGVGEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHR 197 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLK 236 +A+ T P HL + AK +F+ GL+ +N DD+ +L Sbjct: 198 LDAAPIRVALYTNFTPDHLDYHGDMVAYWLAKRALFDWPGLQAAA---INVDDAQGAVLA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVH-HGIGYHMAQ 294 + A G ++++ ++A +LR + L +G++ VH H IG + A Sbjct: 255 DELAARGDLDLWTYALHRDA--RLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNAS 312 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-------TLIDESYN 347 N+L +G + L + A + F GR R R A G + Y Sbjct: 313 NVLAVIGGLRALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYA 372 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ A+S L ++ GR + V G Sbjct: 373 HTPDALDKALSALRPVAHAQGGRLVCVFG 401 >gi|149181058|ref|ZP_01859558.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1] gi|148851145|gb|EDL65295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. SG-1] Length = 443 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 44/312 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T +A+TG+ GKT+T +L+ + K T IG + D ++ +FE Sbjct: 109 TSVAVTGAHGKTSTTGLLSHVIRGAKPTSYLIGD---------GTGKGEKDAEYFVFE-- 157 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H F+ ++++ A E+ ++ I Sbjct: 158 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFANVDDVFQAFQEM--AMQVKKGIIAC 210 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285 DD + ++AK L +G ++ DFQ R + E + +V ++ + Sbjct: 211 GDDEHLQKIQAKVPVL------FYGFAEENDFQARNVNKTPEGTTFDVFVRNEFFATFSI 264 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G G H N L + + D + + L+ F +G +R+ G LID+ Sbjct: 265 PGYGDHSIMNALSVIALCHYEDIDTEIVKERLTSF---QGVKRRF-SEKKIGEQILIDD- 319 Query: 346 YNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P +K I Q PH R L + + LS++ + L E+ Sbjct: 320 YAHHPTEIKVTIEAARQKFPDREIIAVFQPHTFTRTQTFLNEFAD--SLSEADQVYLCEI 377 Query: 396 LSLYNISHVWLS 407 +H LS Sbjct: 378 FGSARENHGKLS 389 >gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia PC184] gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia PC184] Length = 465 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D AL+ F+ R +RY + + G +TLID Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 3_1_46FAA] gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium 3_1_46FAA] Length = 461 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 44/392 (11%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N +++ ++ +L IP+ ++LG L +++ T IA++G+ GKTTT M++ L Sbjct: 83 NPELIEAV-ALKIPMLTRAELLGQL--------MKNYDTPIAVSGTHGKTTTTSMISHIL 133 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 G + I V L + ++ G ++ E P I+VI Sbjct: 134 LE--------GDLDPTISVGGILKAIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVIL 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYS 249 I HL F +E+I + + E L + GT+ +N + + E+ + S + + Sbjct: 186 NIEEDHLDFFKDLEDIRHSFHQFAELLPEDGTLIINAEIKDYAEIYEGLS-----CNVVT 240 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI-GYHMAQNMLMTLGIVSIL 306 +G + D+ + E + L +G+ + + + G H N L + + IL Sbjct: 241 YGTNGCFDYSAKNITY-DENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADIL 299 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----ASMKAAI----- 357 +D + L F G +R+ T+ID+ Y +P A++KAA Sbjct: 300 GLSIDITKRGLLSF---TGTDRRFEYKGEFNGVTVIDD-YAHHPTEILATLKAAQHSLHN 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 SV PH R A + E LS + H+ LA++ + + +S + K+ Sbjct: 356 SVWCVFQPHTYTRTKAFFHEFAEA--LSHADHLVLADIFAARETDTLGISSADL--AKET 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 HY + + F++ + GD+++ Sbjct: 412 EKLGTDTHYFPSFAQIEAFLKENCRPGDLLIT 443 >gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus caprae C87] gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus caprae C87] Length = 449 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 12/140 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L S+A II +TG+ GKTT +T + + K G + +IG + D Sbjct: 107 LISEAPIIGVTGTNGKTT----VTSLIGDMFKKSIITGRLSGNIGYVASKVAQEAKAD-- 160 Query: 164 IFELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 E ++ L + L + +PHIA+IT I AHL +E +AK +I++ + Sbjct: 161 --EYLITELSSFQLLGINEYKPHIAIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDY 218 Query: 223 IFLNYDDSFF---ELLKAKS 239 + NY E LKAK+ Sbjct: 219 LICNYHQRHLIETENLKAKT 238 >gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 462 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 20/160 (12%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT--- 152 ++ +AAR I+ ITG+ GK+TT + L+ ++T+ ++G PL+ Sbjct: 99 GEVELAARFLGGLPIVGITGTNGKSTTTALTGALLARDRRTF-----VGGNLGTPLSELV 153 Query: 153 LARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 L+ P D + EL L I RF R +A + + P HL + ++ A+AKA Sbjct: 154 LSGEPADA--AVVELSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKA 206 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 +F + N D + S A +++FG Sbjct: 207 RLFATQQPDDVAVANARDPRALAMAGASRA----DLHTFG 242 >gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 506 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 29/229 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V ++IDSR I + F A+ G DG FI A+ GA V+ D +A+ G + Sbjct: 32 VANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSIANHGDIVEQDG 91 Query: 87 GVDDVLGALNKL--AVAARL----RSKATIIAITGSVGKTTTKEML-------------- 126 V LN+ A+A R ++ ++A+TG+ GKTT ++L Sbjct: 92 IVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQWANLIGYNAGVM 151 Query: 127 -TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHL--GEIRFLTHLV 182 T + + + N I +P L + DF E+ L G ++ L + Sbjct: 152 GTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLVQGRVKALQFVA 211 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 ++ T ++ HL + A AK +F + G +N DD Sbjct: 212 ----SIFTNLSRDHLDYHGDMANYADAKKCLFTE-HQAGIPVINADDDI 255 >gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC 2396] gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396] Length = 472 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 76/368 (20%), Positives = 151/368 (41%), Gaps = 46/368 (12%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +AI G+ GKTTT ++ L + + T+ IG N G L + + Sbjct: 117 VAIAGTHGKTTTTSLMASVLGEAGLDPTF-VIGGRLNSAGTNAKLG-------ASRYLVA 168 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + G E++ + L G + Y Sbjct: 169 EADESDASFL-HLT-PMVSVVTNIDADHMHTYGGDFEKLKQTFVDFLHNLPFYGVAVMCY 226 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVH 285 DD + + +++ ++G ++ AD + Q Q+ + G + + Sbjct: 227 DDPVVREIIPRVG----RSVITYGFNEKADVRAVDIAQQGMQTSFTAKRPGGHPDLRISL 282 Query: 286 HGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339 + G H N+L L ++++ T + D AI +S + +G G+R++ +++G Sbjct: 283 NMPGKH---NVLNALAVIAVATDEGIADEAI--VSALNKFQGVGRRFQVYGNYPVDEGSV 337 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 L+D+ Y +P + A I + P E R +AV ++ + D +VLS Sbjct: 338 MLVDD-YGHHPREVDATIKAIRDGWP--EKRLVAVF--QPHRYTRTRDLYEDFVQVLSKV 392 Query: 400 NI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVV 448 ++ V+ +G + D + +D +F+ + L DGD+++ Sbjct: 393 DVLVLMDVYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIERGQDVKAVLSGVLQDGDLLL 452 Query: 449 VKSSNSCG 456 + + G Sbjct: 453 TQGAGDIG 460 >gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM 15641] Length = 471 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 31/252 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTY---ACIGSY--NNHIGVPLTLA 154 A+L IAI G+ GKTTT M+ AL I T+ + +Y N H G Sbjct: 102 AQLGVGKKTIAIAGTHGKTTTSSMVASALDGIGADPTFLIGGIVRAYHTNAHSG------ 155 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + + + E S + T+L P+ ++T + HL +++ +EEI + E Sbjct: 156 ----EGAYYVVEADESD----KSFTYL-DPYAVLVTNVEADHLDHYNDLEEIHAKFTEFM 206 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + G + + DD L A + K + ++G ++ AD + W S + Sbjct: 207 SQVPDDGLLVVCADDEVLVSLAASTG----KRMVTYGSAEGADAHIESWAPAGVGSTFTL 262 Query: 275 QLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 +L ++ V G H N TL ++ + D ++LS F G +R+ Sbjct: 263 KLPDGTLVEGSVKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNF---AGVRRRFDL 319 Query: 333 ALNQGFFTLIDE 344 T++D+ Sbjct: 320 VGEADGVTIVDD 331 >gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 437 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 32/261 (12%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+TG+ GKT+T +L+ ++ K+T IG +G+P + +F FE Sbjct: 104 IAVTGAHGKTSTTGLLSHVMNGDKRTSFLIGD-GTGLGIPQS--------EFFAFE---- 150 Query: 171 HLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E R FL++ P A++T I H F ++++ +A E+ ++K G + D Sbjct: 151 -ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKDVDDVTNAFQEMAYNVKK-GIVAWGKD 206 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287 + L K K+ IY +G KN D + + +V + GK + + Sbjct: 207 E---HLRKIKADV----PIYYYGLEKNEDIYADNIQITEHGTQFDVYIDGKYFDQFLSPQ 259 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + + D++ +AL F + R + NQ L+D+ Y Sbjct: 260 YGDHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFNETKLH-NQ---VLVDD-YA 314 Query: 348 ANPASMKAAISVLSQISPHGE 368 +P + A I + P+ E Sbjct: 315 HHPREINATIETARKKYPNKE 335 >gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] Length = 518 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 42/252 (16%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88 D+RS+A +AFFA D FI A+++GA V+V + + L++P Sbjct: 34 DTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAINPSNMLAVP---- 89 Query: 89 DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ALN+LA +A+ + + + ITG+ GKT+ + ++ AL+++ A IG+ Sbjct: 90 -----ALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184 H G P + D G + M H G + Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV T + HL E +AKA +F E + +N DD+ L A + Sbjct: 201 DIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAV-INRDDAAGRRLLASTQGHAR 259 Query: 245 KTIYSFGKSKNA 256 Y + A Sbjct: 260 TIAYGLDSGQGA 271 >gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] Length = 487 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 29/242 (11%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 ++ I+ H G V GIS +S+ I FFAIKG DGH+FI A + A VV Sbjct: 14 IEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFIQEAFKNKAIGAVV 73 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNK--LAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 D V + ++ V L AL + L K + ++TG+ GK+T +L+ Sbjct: 74 EKD-VDYVNTIK-----VRSTLQALRETSLVFYDYPFKKLFLGSVTGTNGKSTITWILSH 127 Query: 129 ALSSIKKTYACIGSYN-NHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 A++ + +G+ H G L + +D+ +G E+ Sbjct: 128 AVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQLDMKYGFLEVSSHA 187 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDD 229 L R H ++ A+ T +A H+ +E+ K +F L++ + +N DD Sbjct: 188 LKLGRL--HGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLKENAFVVINIDD 245 Query: 230 SF 231 + Sbjct: 246 LY 247 >gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 466 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 21/201 (10%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK--KTYA 138 L+IPV D L +L LR+ IA+ G+ GKTTT ML +ALSS+ +YA Sbjct: 92 LAIPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLSLAPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G P T + G ++ ++ E P +A++ + H + Sbjct: 143 IGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 N++ ++EI + + GT+ ++ D L + L + ++G +++AD Sbjct: 193 NYASMDEIYDSFETFVGKVVPGGTLVISADQPGAVELTRRVRDLADLKVVTYGSAEDADV 252 Query: 259 QLRKWKQCSEQSWMEVQLQGK 279 ++ K S + V L GK Sbjct: 253 RVHKVTPRGLTSEVTVLLNGK 273 >gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus JCSC5402] gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus JCSC5402] Length = 431 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 42/298 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+ T +A+TGS GKT+T +L+ ++ KKT IG +G+P + ++ F Sbjct: 99 SQYTSVAVTGSHGKTSTTGLLSHVMNGDKKTSYLIGD-GTGMGMPGS--------EYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A+IT I H F+ + ++ +A E+ + ++K I Sbjct: 150 E-----ACEYRRHFLSY--SPDYAIITNIDFDHPDYFASMSDVFNAFQEMTKKVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD ++A IY +G ++ + K + + EV + G+ + Sbjct: 201 VACGDDENLRDIEADI------PIYYYGFKEDNKVVAKNMKTTPQGTQFEVYIDGELFDT 254 Query: 284 -VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V G H N L + I + D ALS F G KR Q LI Sbjct: 255 FVTPMYGDHQVLNALAVITICHLEGLDNAAVKHALSTF----GGVKRRFSEKIQDEQILI 310 Query: 343 DESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 D+ Y +P +KA + V++ PH R A L D +L+ ++ Sbjct: 311 DD-YAHHPTEIKATLQSAHLKYPERKVIAIFQPHTFSRTSAFLEDFANSLKLADKVYL 367 >gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus 238] gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus 238] Length = 471 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 13/192 (6%) Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++T I P H+ ++ IE + + + + G DDS + L K + + Sbjct: 187 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302 + ++G + AD + + +V LQ + + +V + G H N L + + Sbjct: 244 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVDCALPMPGDHNVSNALSAIAV 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + AL+ F +G G+R+ T+ID+ Y +P + A + Q Sbjct: 304 ARYLGMKTEEIRTALTAF---KGVGRRFTRVGEVDGVTIIDD-YGHHPTEITAVLKAARQ 359 Query: 363 ISPHGEGRRIAV 374 S EGR IAV Sbjct: 360 AS---EGRIIAV 368 >gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D str. JGS1721] gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D str. JGS1721] Length = 457 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374 >gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium gallicum DSM 20093] gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium gallicum DSM 20093] Length = 474 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 27/257 (10%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R A I ITG+ GKT+T EM++ L++ T +G +IG L+LA + + D Sbjct: 96 RTGKPAPWIGITGTNGKTSTTEMVSTMLTACGYTAPAVG----NIGNALSLAAVDPNNDV 151 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 EL L T + A IT I HL GIE A+ K++++ ++ Sbjct: 152 LCVELSSFQL----HFTDSMALDCAAITNIGADHLDWHGGIERYAADKSKVYAHAQQ--A 205 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM- 281 I N D+ L + A + ++ ++ + M M Sbjct: 206 IVYNAQDARVRDLAFAADASCARIGFTLDVPQDGMIGVADGWIVDRAGLMGSDPATPVMV 265 Query: 282 ----EVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + H G Y H+ + + L V AD A++AL F P G R C Sbjct: 266 APVADFTHLREPDGTVYPHLLADAMTALAWVLSFGADAAPALEALKTFKPG---GHRIEC 322 Query: 333 AL----NQGFFTLIDES 345 ++G ID+S Sbjct: 323 VAQYTSDEGAIRFIDDS 339 >gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] Length = 494 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/393 (22%), Positives = 150/393 (38%), Gaps = 51/393 (12%) Query: 14 IQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +QG I VP F ++G+ DSR + +AF A+ G +I A+ GA ++++ Sbjct: 10 LQG--IAPVPSVFDVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATVILL 67 Query: 71 NT----DMVASIGSLSIPVFGVDDVLGALNKL---AVAARLRSKATIIAITGSVGKTTTK 123 + + G L +PV + LG + + RLR +I +TG+ GKT+ Sbjct: 68 ESAQPDECYEHEGVLIVPVTALRAHLGKIADRFFEHPSQRLR----LIGVTGTNGKTSVS 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTL---ARMPVDV---------------DFGIF 165 + L IG+ G+P L A DV Sbjct: 124 HYIATLLQETGTPCGVIGTLG--YGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAM 181 Query: 166 ELGMSHL--GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E+ L G + LT AV T + HL ++ +AKA +F E+ Sbjct: 182 EVSSHALEQGRVDNLTMTG----AVFTNLTRDHLDYHGSMDAYGAAKARLFH-REELHFA 236 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +N+DD F L K + YS +++ + L ++ + V V Sbjct: 237 VINFDDPFGRQLYEKLDGKCDRVRYSLHEAQT-ELWLTEFAPSIDGFSASVDGLWGRFNV 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+L + V L V+ +A+ P GR + + A + ++D Sbjct: 296 SARVLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPF--AGSNDVRVVVD 353 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ +A++ L PH GR V G Sbjct: 354 --YAHTPDALNSALAAL---RPHVGGRLFCVFG 381 >gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae DSM 15829] gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium vaginae DSM 15829] gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium vaginae DSM 15829] Length = 493 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 23/193 (11%) Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 AC+G ++H+ D F + EL L E T L+ PH A++ I P H+ Sbjct: 151 ACLGEVDHHLA----------DTWF-VAELSSFQLAE----TKLLHPHAAILLNITPDHI 195 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 ++ A+AK IF L ++ DD + + + ++ G+ + + D Sbjct: 196 EWHGSMQAYAAAKERIFANLTTDDLAIISRDDLYCKAIYSRLVERGLSPVCV---DTSQD 252 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSILTADVDTA 313 + + CS+ S + V+L G + ++ G H QNML + + VD Sbjct: 253 PKTLQAAYCSD-SMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVSVDAI 311 Query: 314 IKALSVFHPKEGR 326 + L F E R Sbjct: 312 RQVLQTFTTLEHR 324 >gi|82751329|ref|YP_417070.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus aureus RF122] gi|82656860|emb|CAI81289.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus RF122] Length = 412 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 57 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 107 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 108 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 151 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I D+ L K ++ IY +G + D Sbjct: 152 DYFKDINDVFDAFQEMAHNVKK-GIIAWGDDE---HLCKIEADV----PIYYYGFKDSDD 203 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 204 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 263 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 264 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 318 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 319 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 346 >gi|304310316|ref|YP_003809914.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma proteobacterium HdN1] gi|301796049|emb|CBL44253.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma proteobacterium HdN1] Length = 442 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165 K I+AITGS K+T ++ + ++ G +IGVP L + + +F + Sbjct: 100 KTPILAITGSNAKSTVTTLMGEMVKGSGRSVVVGG----NIGVPVLDVLQEAQSAEFCVL 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L T+ +R H+A I I+P HL + ++E +AK I+ T Sbjct: 156 ELSSFQLE----TTYSLRAHVATILNISPDHLDRYPSMKEYTAAKHRIYRNARHT---VA 208 Query: 226 NYDDS 230 N DDS Sbjct: 209 NADDS 213 >gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10 bacterium 'Dutch sediment'] Length = 475 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 39/310 (12%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ + +IPV ++L L ++ +A+ G+ GKTTT M+ L Sbjct: 78 NPEIVAA-KAHAIPVIQRAEMLAELMRMKYG---------VAVAGTHGKTTTTSMVATVL 127 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + IG + +G L R G F + + + FL + P IAV+ Sbjct: 128 AKAGLDPTVVIGGRLDALGSNAKLGR-------GEFMVAEADESDGSFLK--LAPTIAVV 178 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TT+ HL + +++I E + G+ L D L K + S Sbjct: 179 TTVDAEHLDYYRDLQQIKETFLEFINKVPFYGSAILCLDQEHIRDLLPMVQ----KRVVS 234 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI---VSI 305 +G AD S +V+ +G+ + V I G H N L + + + I Sbjct: 235 YGCHTQADLMAEGVSLTGLSSTFKVRFKGEPLGEVQLRIPGVHNVSNALAAMAVGLELDI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A + TA+ S G +R++ + ++D+ Y +PA ++A + + + Sbjct: 295 EFAAIRTALGEFS------GVVRRFQVKGSPQDIMVVDD-YAHHPAEIQATL----KAAR 343 Query: 366 HGEGRRIAVL 375 G GRR+ V+ Sbjct: 344 DGFGRRLIVI 353 >gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM 4541] gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM 4541] Length = 472 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 68/325 (20%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + + + L IPV ++L L R R IA+ G+ Sbjct: 62 ENASVVVVSTAISMDNPEIQAAKELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M I YA G P V+ G+ + +H LG Sbjct: 113 HGKTTTTAM-------ISGIYAQAGLD-------------PTFVNGGLVKSAGTHARLGS 152 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +AV+T I H+ + G E + L G Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGR 211 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281 + DD L K +G + I ++G S++AD ++ K+ Q Q + + +G + Sbjct: 212 AVMCIDDPVIRSLLPK---IG-RYITTYGFSEDADVRITKYTQKGNQGFFTIAREGMPEL 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335 VV + G H A N + + + D + AL F +G G+R+ N Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDLHILSALVEF---QGTGRRFDFLGNYALRNV 324 Query: 336 ---QGFFTLIDESYNANPASMKAAI 357 +G L+D+ Y +P + A I Sbjct: 325 NGKEGEVMLVDD-YGHHPTEVDATI 348 >gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E str. JGS1987] gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC 8239] gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E str. JGS1987] gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC 8239] Length = 457 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374 >gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] Length = 487 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 143/380 (37%), Gaps = 59/380 (15%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 VN I DSR I + F AI G DGH +I + GA +V +P Sbjct: 24 VNKIEFDSRQIQVNDVFVAISGTVTDGHRYIDRVIDAGATTIVCEV----------LPEA 73 Query: 87 GVDDV----LGALNK-LA-VAARLRSKAT----IIAITGSVGKTTTKEML---------T 127 DDV + NK LA +AA + +I +TG+ GKTT +L Sbjct: 74 LKDDVTYIEVANSNKALAYMAANFYEHPSENLKLIGVTGTNGKTTVSSLLYQLFKKAGYK 133 Query: 128 IALSSIKKTYACIGSYNNHIGVP--LTLARM-----PVDVDFGIFELGMSHLGEIRFLTH 180 + L S K +Y P LT+ R V+F E+ + + R T Sbjct: 134 VGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQMNDEGVEFCFMEVSSHGIHQSR--TE 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLK 236 +R + T ++ HL E K F+ L K N DD + + + Sbjct: 192 GLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQLPKDAFALSNMDDKNGLAMLQNTQ 251 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 AK + +K AD++ Q E + + L+ E+ IG A N+ Sbjct: 252 AKKYTYALKNY--------ADYR----AQILENEFSGLLLKVNDSELWTRLIGSFNAYNI 299 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L G +L + D ++ +S GR + + ++ ++D Y P ++K Sbjct: 300 LAIYGTAELLGLEKDEILRLISELENVSGRFQYFIS--DEKITAVVD--YAHTPDALKNV 355 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + ++ I E I V+G Sbjct: 356 LETINNIRTKNE-ELITVVG 374 >gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia HI2424] gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia HI2424] Length = 465 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D AL+ F+ R +RY + + G +TLID Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE str. F4969] gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE str. F4969] Length = 457 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 60/294 (20%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLR----KWKQCS--EQSWM 272 G I N DD E+L+ AK + L ++G + N D Q R K C+ + Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVL------TYGIN-NGDIQARNIEFNEKGCATFDVFRN 268 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E +L S+ V G H N L + + I + D + LS F G KR+ Sbjct: 269 EEKLLSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEY 321 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 + T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 322 KGTKNDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374 >gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 769 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 51/381 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 + GI DSR ++ + F G DGH ++ A ++GA VV + D+ ++G ++ Sbjct: 265 ITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 324 Query: 85 VFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------KT 136 + V+D L LA A +I I G+ GKTTT ++ ++ T Sbjct: 325 I--VEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGKTTTAYLIRAMYEAMGLRTGMLST 382 Query: 137 YACIGSYNNHIGVPLT----------LARM------PVDVDFGIFELGMSHLGEIRFLTH 180 A N + P T +A+M V ++ L + E+ F Sbjct: 383 VAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAVVMEASSHGLALGRCNEVDF--- 439 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAK 238 IAV T + H+ E+ +AKA++F + +N DD A+ Sbjct: 440 ----DIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQ 495 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + ++K+AD K++ ++ + VQ +E+ +G H N+L Sbjct: 496 GNP-DVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNILA 554 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFTLIDESYNANPASMKA 355 + + + A ++ ++ + G RC L Q F ++D ++ + S Sbjct: 555 AVAVGIAVGAPLEDIVRGIEEIDAVPG-----RCELIDEEQAFGVIVDYAHTPDALS--- 606 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +L + G R I V G Sbjct: 607 --RLLDSVRELGARRIITVFG 625 >gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] Length = 495 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 89/380 (23%), Positives = 149/380 (39%), Gaps = 54/380 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+ +DSR + P + + + G + DGHDF A+ +GA + +V I L IP Sbjct: 29 LIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAAL-----LVERILPLDIPQ 83 Query: 86 FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V V + LA AA+L ++ +TG+ GKTT ++ + K Sbjct: 84 LQVKKVREVMGNLAANLYDHPAAKLE----VVGVTGTNGKTTITYLVESIAAGEGKKVGL 139 Query: 140 IGSYNNHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 IG+ I G L R P +D M G ++ V H Sbjct: 140 IGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEG-VQLAVMEVSSHALVFGRVTGCEF 198 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLKAKS 239 + + + HL +EE AKA++F GL K G + N DD E L S Sbjct: 199 DAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV--NGDDPAAETLIRLS 256 Query: 240 HALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + ++G + + D++ ++ V+ +G++ +V + G N L Sbjct: 257 AA----PVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNALA 312 Query: 299 TL--GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 G+ S + +AL+ GR + R + Q F ++D Y P ++ Sbjct: 313 AFAWGVESGRSP--GQVREALAAVQGVPGRFESVR--MGQPFQIIVD--YAHTPDGLENV 366 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + + +GR I V G Sbjct: 367 CRTAQEFT---QGRLITVFG 383 >gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] Length = 499 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA +V+ D G + +PV Sbjct: 34 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 94 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153 >gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] Length = 513 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 72/330 (21%), Positives = 129/330 (39%), Gaps = 48/330 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ ++++ P + F KG G F+ A+ +GA +V + I IP Sbjct: 47 ITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 106 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L+ + +AA ++IAITG+ GKTT ++ L+++ K A IG+ Sbjct: 107 WVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAVIGT-- 164 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-FLTHLVRPHIA---------------- 187 IG L + + EL E+ L VR ++ Sbjct: 165 --IGFYLDGEKQQTSYE----ELTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRL 218 Query: 188 --------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V ++ HL + G+E AK + + +K + LN DD+F Sbjct: 219 DHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNGDDNF-------C 268 Query: 240 HALGI---KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++GI K SFG + D ++ + ++ + +Q + +G + QN Sbjct: 269 RSVGIYDKKKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIIEIPFVGKYHVQNT 328 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + L V L +D ++ + EGR Sbjct: 329 VAALMAVWRLGTPMDDIVEHMWSLRLPEGR 358 >gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia MC0-3] gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia MC0-3] Length = 465 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D AL+ F+ R +RY + + G +TLID Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 520 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 35/304 (11%) Query: 103 RLRSKATIIAITGSVGKTT----TKEMLTIALSSIKKTYACIGS--YNNHIGVPLT--LA 154 + + + A+TG+ GKT+ +++ ++SI C+ + +N + P L Sbjct: 132 QFKQPKYVAAVTGTNGKTSVVEFCRQIWQDNVASIGTLGTCVNNNRKDNSLTTPSADDLY 191 Query: 155 RMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 D++ E L S G ++ H +R + A T + HL I+E AK Sbjct: 192 STLRDINNKNVEHLALEASSHGIDQYRIHGLRLNAAAFTNFSQDHLDYHKSIDEYFEAKK 251 Query: 212 EIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +F E L K T LN D + L + G K I ++GK KN+D L K + Sbjct: 252 RLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVI-TYGK-KNSDITLLKQIPTANGQ 309 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 ++ +Q+ + G A N+L +GIV +++ +D + GR ++ Sbjct: 310 YLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIV--ISSGMDYQRMCIDKLASPSGRMEKV 367 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG--------DMCEMG 382 F +D Y P+++K A+ L H + + V G EMG Sbjct: 368 NT------FAFVD--YAHTPSALKQALLSLKW---HFNKKIVLVFGCGGNRDQTKRAEMG 416 Query: 383 ELSQ 386 +++Q Sbjct: 417 KIAQ 420 >gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi 35000HP] gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP] Length = 475 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 62/394 (15%) Query: 56 FILHAVQK--GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA +VVV N + + S IPV + LA R R Sbjct: 67 FIGHQAENIAGASVVVVSSAIEENNPEITAAKSARIPV------IQRAQMLAEIMRFRHS 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDV 160 IA+ G+ GKTTT ML++ + + T+ G N H+G L + Sbjct: 121 ---IAVAGTHGKTTTTAMLSMIYTEAGLDPTFVNGGLVKSAGKNAHLGASRYLIAEADES 177 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 D L +P ++V+T I P H+ + G E++ + + L Sbjct: 178 DASFLHL---------------QPMLSVVTNIEPDHMDTYGGDFEQMKTIYVKFLRNLPF 222 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQG 278 G + DD +++ + +G + + S+G + NAD+++ ++Q Q + + Sbjct: 223 YGLAVMCADD---DVVMEIAPQVG-RQVISYGFNANADYRIENYQQTGFQGHYTVICPNN 278 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----AL 334 + ++VV + G+H A N L + D + AL+ F +G G+R+ Sbjct: 279 ERLDVVLNVPGHHNALNATAALAVAKEEGIANDAILAALADF---QGAGRRFDPLGTFKR 335 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 G LID+ Y +P + I Q H +RI ++ F D Sbjct: 336 PNGTVMLIDD-YGHHPTEIAVTIKAARQGWQH---KRIVMIFQPHRYSRTRDLFD-DFVN 390 Query: 395 VLSLYNI---SHVWLSGFHVLALKD--ALPRSIH 423 VLS ++ V+ +G + + D AL RSI Sbjct: 391 VLSKVDVLIMLDVYAAGENAIVKADSKALCRSIR 424 >gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida KT2440] gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas putida KT2440] Length = 496 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 27/233 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSRS+ P + F A+ G DG + I A+ +GA V + +P+ Sbjct: 18 LIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDVPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++ L+ +A R + + ++ +TG+ GKT+ +++ AL + + IG Sbjct: 78 IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 + L R+ P+ V + +L G R + V H Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDL---KKGGARAVAMEVSSHALEQGRVAALEF 192 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 IAV+T ++ HL +E +AKA++F +N DD F L A Sbjct: 193 DIAVMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDDFGRRLAA 244 >gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta proteobacterium NaphS2] gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta proteobacterium NaphS2] Length = 467 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V ++T + + IP+ G ++ +AAR IIA TG+ GKTT L Sbjct: 89 VPLDTPFMKAALKRQIPIIG---------EMELAAR-HVDVPIIAATGTNGKTTVTSFLG 138 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + +G +IG PLT M + D+ + E+ L I T P I Sbjct: 139 RMLED-QGLAVFVGG---NIGTPLTAYLMGEMKADYLVVEISSFQLDTIERFT----PEI 190 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 ++I I+P HL ++ +K IFE T+ LN DD Sbjct: 191 SIILNISPDHLDRYADYSAYIHSKLRIFENQGAGQTVILNDDD 233 >gi|224372892|ref|YP_002607264.1| UDP-N-acetylmuramate--L-alanine ligase [Nautilia profundicola AmH] gi|223589642|gb|ACM93378.1| UDP-N-acetylmuramate--alanine ligase [Nautilia profundicola AmH] Length = 434 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 32/248 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++++ G+ GK+TT ML S + KT A IG+ + G + D+ +FE Sbjct: 102 VLSVCGAHGKSTTSSMLA---SILPKTNAIIGAESKDFGSNMRYT----GSDYLVFE--- 151 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + F+ P+IA++T P H+ ++ ++ E F L+K +N DD Sbjct: 152 SDESDGSFIDS--NPYIAIVTNTEPEHMEYYNHDLKLFYRHYEEF--LKKAKIRVVNADD 207 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 F + L + IK +KN +++ K + + K+ + +G G Sbjct: 208 EFIKTLDFPMKKVSIKD------AKNIRYEIIDNKP-------KTVFEYKNYDFEVYGFG 254 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H+ + L+ + + L ++ K + +H G KR+ N F LID+ Y + Sbjct: 255 EHLVLDALLAIEAANELIT-MEEIQKNIKNYH---GIKKRFDILQNCENFILIDD-YGHH 309 Query: 350 PASMKAAI 357 P +KA + Sbjct: 310 PTEIKATL 317 >gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii RML369-C] gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii RML369-C] Length = 450 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 20/139 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+TG+ GK+TT +++ LS Y G +IGVP+ A+ G + L Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPVAG----NIGVPVLQAKASK----GGYVLE 156 Query: 169 MSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S F LV+ IAV+ I P HL +E +AK++IF+ ++K + Sbjct: 157 LS-----SFQLDLVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGII 211 Query: 226 NYDDSF----FELLKAKSH 240 N D+ + F L+ K H Sbjct: 212 NIDNDYCHEIFTNLQQKHH 230 >gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus XylebKG-1] gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus XylebKG-1] Length = 466 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 21/203 (10%) Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKT 136 G L++PV D L +L LR+ IA+ G+ GKTTT ML +ALSS+ + Sbjct: 90 GELAVPVVHRSDALASLMN-----GLRA----IAVAGTHGKTTTTSMLAVALSSLGLAPS 140 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 YA G P T + G ++ ++ E P +A++ + H Sbjct: 141 YAIGGDLEG----PGT------NATHGEGDIFVAEADESDRSFQKYDPEVAIVLNVELDH 190 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 +N++ ++EI + + GT+ ++ D L + L + ++G +++A Sbjct: 191 HANYASMDEIYDSFETFVGKVVPGGTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDA 250 Query: 257 DFQLRKWKQCSEQSWMEVQLQGK 279 D ++ K S + V L GK Sbjct: 251 DVRVHKVTPRGLTSEVTVLLNGK 273 >gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 465 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 93/416 (22%), Positives = 168/416 (40%), Gaps = 59/416 (14%) Query: 63 KGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 +GA +VV N ++V + + IPV ++L L +L + IAI+G Sbjct: 66 EGADVVVYSSAVRETNPELVCAKDNF-IPVIKRGEMLAELMRLKYS---------IAISG 115 Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 S GKTTT M+ L++ K +G N TL V V + + Sbjct: 116 SHGKTTTTSMVAEILNAAKLDPTVVVGGILNTKDTNATLGSGNVIV-------AEADESD 168 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-DDSFFE 233 FL L+ P +A++T I H + +E++ A+ + G+ L DD+ + Sbjct: 169 RSFL--LMSPSVALVTNIDFEHPDTYRDLEDVKRTFADFISRVPFYGSAVLCLEDDNTAD 226 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L+ L + ++G AD +Q +V + G+ + +G+ Sbjct: 227 LI-----PLIDRRFVTYGFRAQADVHGVNVEQKGFSMQFDVIISGEKAGRIK--LGFPGE 279 Query: 294 QNMLMTLGIVSILTA-DV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L LG +++ T D+ T +AL F +G +R + G ++D+ Y +P Sbjct: 280 HNVLNALGAIAVATQFDIPFRTIKRALEGF---KGVQRRLTSRYDDGECIVMDD-YGHHP 335 Query: 351 ASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +K + +L+ PH R A++ + + F D+ + +Y Sbjct: 336 TEIKTTLKAVRGAYPDKKILAIFQPHRYSRTAALMKEFA-----TAFFDADMLFITDIYA 390 Query: 401 ISHVWLSGFHVLAL-KDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 S + G A+ K+ R +V Y DG+F ++ DG V++ + S Sbjct: 391 ASEEKIDGVDSEAMVKEIKTRGFKNVKYIPGFDGIFEYLHEYGCDGTVMLTLGAGS 446 >gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans Hxd3] gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans Hxd3] Length = 457 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 75/323 (23%), Positives = 132/323 (40%), Gaps = 43/323 (13%) Query: 64 GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VVV++ + VA+ IPV ++L + LR K +I+ I G+ Sbjct: 64 GADVVVVSSAIAADNPEVAAAREAGIPVIPRAEMLAEI--------LRLKYSIV-IAGAH 114 Query: 118 GKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+T M+ L IG IG L D+ + E S ++ Sbjct: 115 GKTSTTSMVASVLGQGGMDPTVVIGGKLKSIGTNAVLGHG----DYIVAEADESDGSFLK 170 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 F P IAV+T I HL + + I+ + E + + G + D+ + L Sbjct: 171 F-----SPSIAVVTNIDREHLDFYPDLAAISKSFLEFLDRIPFYGVAVVCLDNEPLQALV 225 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQN 295 L K ++G S AD Q R + + V + + + + G+ G+H +N Sbjct: 226 ----PLIKKRFITYGTSNQADLQARHITPINGKVRFSVVWRQEELGTIDLGVPGFHNVRN 281 Query: 296 MLMTLGI---VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 L + + + + A + A++ ++ G +R G ++D+ Y +P Sbjct: 282 ALAAVAVGLELGLAFAVIKEALETMA------GVQRRLEKKGETGGVIVVDD-YGHHPTE 334 Query: 353 MKAAISVLSQISPHGEGRRIAVL 375 +KA + + Q H E RR+ V+ Sbjct: 335 IKATLQGVRQ---HWEDRRVVVV 354 >gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Alteromonadales bacterium TW-7] gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Alteromonadales bacterium TW-7] Length = 483 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 135/318 (42%), Gaps = 43/318 (13%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 K A +VVV N +++A+ + IPV ++L L R R IAI G Sbjct: 76 KDANVVVVSSAIDETNPEIIAAKAA-RIPVVRRAEMLAEL------MRFRHG---IAIAG 125 Query: 116 SVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 + GKTTT ++ A + + T+ IG N G + + DF I E S Sbjct: 126 THGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEADES--- 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + FL HL +P ++VIT I H+ + G +E++ + L G + D Sbjct: 178 DASFL-HL-QPMVSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVA 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYH 291 L + G + I ++G+S AD+++ + Q + V QG+ + + G H Sbjct: 236 AELIPR---FG-RPIITYGESPTADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGKH 291 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYN 347 A N + + ++AL F EG G+R++ +G L+D+ Y Sbjct: 292 NALNATAAIAVAKDQNIANQAILEALQKF---EGIGRRFQQYGEFENERGNIMLVDD-YG 347 Query: 348 ANPASMKAAISVLSQISP 365 +P+ + A I+ + + P Sbjct: 348 HHPSEVAATIAAVREGWP 365 >gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme) [Candidatus Cloacamonas acidaminovorans] gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme) [Candidatus Cloacamonas acidaminovorans] Length = 472 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 18/140 (12%) Query: 95 LNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 ++++ + R+++K + IIA+TGS GK+TT ++ L+ + K G+ + Sbjct: 115 ISEIELGYRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAGNIGD-------- 166 Query: 154 ARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 A D+ D+ + E+ L L + +P +AV+ I P H+ ++ E+ A Sbjct: 167 AFCSYDIEKPGWDYIVLEISSFQLD----LINSFQPDVAVLLNITPDHIDRYNSFEDYAL 222 Query: 209 AKAEIFEGLEKTGTIFLNYD 228 +K IF+ E T T L +D Sbjct: 223 SKVNIFKNQEMTDTAVLFWD 242 >gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu] Length = 465 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGDLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G+ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGREPLPVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY A G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPAAGGGSYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + +D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKVAQNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|254369764|ref|ZP_04985774.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. holarctica FSC022] gi|157122723|gb|EDO66852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. holarctica FSC022] Length = 416 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK ++Q+ + + K +++V Sbjct: 202 VYD----------VHN-GIKYA--------GEYQIIRGAIYRNST--------KLLDIVE 234 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 289 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327 >gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum 3TCK] gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum 3TCK] Length = 486 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 147/385 (38%), Gaps = 70/385 (18%) Query: 56 FILHAVQK--GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 F HA + GA +VVV N ++VA+ L IPV ++L L R R Sbjct: 71 FFGHAAENVNGASVVVVSTAIAQDNPELVAA-RELRIPVVRRAEMLAEL------MRYRH 123 Query: 107 KATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG-----SYNNHIGVPLTLARMPVD 159 IAI G+ GKTTT ++T + + T+ G N +G L + Sbjct: 124 G---IAIAGTHGKTTTTALMTQIYFEAGLDPTFVNGGLVKSAGTNARLGCSRYLIAEADE 180 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 D L +P ++V+T I H+ + G E + + L Sbjct: 181 SDASFLHL---------------QPMVSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLP 225 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G + DD L + +G + I ++G S +AD ++ ++KQ + Q + G Sbjct: 226 FYGLAVMCVDDPVVRELLPR---IG-RQIITYGFSDDADVRIVEYKQYAHQGHFTIVRAG 281 Query: 279 K-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCA 333 K + V + G H A N + + + D D I+AL F EG G+R+ Sbjct: 282 KPDLNVKLNIPGKHNALNATAAVAVATEEGVDDDAIIRALLEF---EGTGRRFDHLGEFD 338 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGE 383 G L+D+ Y +P+ + I PH R + D + E Sbjct: 339 TGNGSVMLVDD-YGHHPSEVDVTIQAARAGWEKKRLVMIFQPHRYSRTRDLYEDFAHVLE 397 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG 408 +D+ +L +Y+ V + G Sbjct: 398 -----QVDVLLMLDVYSAGEVAIPG 417 >gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 453 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + + T+ IG N G + + DF I E Sbjct: 91 IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 145 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL HL +P ++VIT I H+ + G +E++ + L G + Sbjct: 146 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 200 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 D L + G + + ++G+S +AD+++ + Q + V QG+S+ + Sbjct: 201 DSEVASELIPR---FG-RPVITYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLN 256 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342 G H A N + + ++AL F EG G+R++ +G L+ Sbjct: 257 MPGKHNALNATAAIAVAKDQNIANFAILEALQKF---EGIGRRFQHYGEFENERGSVMLV 313 Query: 343 DESYNANPASMKAAISVLSQISP 365 D+ Y +P+ + A I+ + P Sbjct: 314 DD-YGHHPSEVAATITAAREGWP 335 >gi|3122408|sp|O31211|MURC_STAAU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|2642659|gb|AAB87090.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Staphylococcus aureus] Length = 437 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QMKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + DV +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces ghanaensis ATCC 14672] gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces ghanaensis ATCC 14672] gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces ghanaensis ATCC 14672] Length = 472 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +PV+G DV +LA R A +A+TG+ GKTTT +ML L + A +G Sbjct: 98 VPVWG--DV-----ELAWRLRRPDSAPWLAVTGTNGKTTTVQMLASILEAAGLRTAAVG- 149 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +IGV L A + + ++ + + +S ++ + L R H AV+ +AP HL Sbjct: 150 ---NIGVSLLDAVLGEE-EYDVLAVELSSY-QLHWAPSL-RAHSAVVLNLAPDHLDWHGS 203 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 ++ A+ K I+EG + ++ D + +L++ G + + Sbjct: 204 LQAYAADKGRIYEG-NRVACVYNVADKATEDLVREADVEEGCRAV 247 >gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis EO147] Length = 464 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 37/363 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD + L + + +G + +A + + + V +G+ + VV + Sbjct: 218 DDPNVRQIV----PLISRPVVRYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344 G H QN L + I S L D AI +AL+ F+ R +RY + G +TLID+ Sbjct: 274 LPGLHNVQNALAAIAIASDLDV-ADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDD 332 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401 Y +P M A I+ P GRR+ VL ++ D VLS + + Sbjct: 333 -YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALVL 387 Query: 402 SHVWLSGFHVL--ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + V+ +G + A DAL R++ + T+D + + GDVV+ + Sbjct: 388 TEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGDVVITMGAG 447 Query: 454 SCG 456 S G Sbjct: 448 SIG 450 >gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 1 str. 16M] gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 467 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + +P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLELPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 502 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 39/250 (15%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG----------AGL 67 ++G+VP G++ DSR + P + F A G DG +I A+ G AG Sbjct: 22 TLGVVP----GGVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGT 77 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + +L+ V G+ ++ G L A+ R + ++IA+TG+ GKT+ + + Sbjct: 78 PDFAWNRTWQVANLA--VAGLRELCGPLAN-AIYGRPSERLSLIAVTGTNGKTSVSQWIA 134 Query: 128 IALSSIKKTYACIGSYNNHIGVP-------------LTLARMPVDV---DFGIFELGMSH 171 ++ + A IG+ G+P TL R D L S Sbjct: 135 ---ATHPRRCAVIGTLG--AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASS 189 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +G R +AV T + HL + + A AKA +F + N DD F Sbjct: 190 IGIAEGRLDGARVDVAVFTNLTRDHLDYHATMAAYAQAKARLF-AWPRLRLAVSNLDDPF 248 Query: 232 FELLKAKSHA 241 L A S A Sbjct: 249 GRELAALSTA 258 >gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 457 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M++ +ALS+ P L +D+ G F +G Sbjct: 114 VAVAGTHGKTTTTSMISHVALSADLD--------------PTILVGGDLDIIHGNFRVGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S F+T P++ +I I HL + I I + + Sbjct: 160 SEY----FITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPND 215 Query: 221 GTIFLNYDDS-FFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQL 276 G I N DD E+L+ AK + L + +++N +F K C+ + E +L Sbjct: 216 GYIIGNADDEKVMEVLEVAKCNVLTYEINNGDIQARNIEFN---EKGCATFDVFRNEEKL 272 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 S+ V G H N L + + I + D + LS F G KR+ + Sbjct: 273 LSLSLNVP----GMHNVSNSLSAVCLAEIFNINADAIVSGLSSFG---GAHKRFEYKGTK 325 Query: 337 GFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGD 377 T+ID+ Y +P +KA +S +++ PH R + D Sbjct: 326 NDITVIDD-YAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFND 374 >gi|118474991|ref|YP_891986.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40] gi|118414217|gb|ABK82637.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40] Length = 478 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164 S I+ IT S GKT+ K L L Y S N G+ + + + I Sbjct: 155 SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 214 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 E G G+I+ +T + PH ++ I AH+ F IE + + K E Sbjct: 215 AEAGARLKGDIKDITEFLEPHFVIVGEIGDAHIEYFKSIENVRATKLE 262 >gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383] gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383] Length = 465 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIRDGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D AL+ F+ R +RY A + G +TLID Sbjct: 273 NMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPAADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + T+D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14] Length = 458 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 89/411 (21%), Positives = 170/411 (41%), Gaps = 48/411 (11%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DG D +++ A + N +++ ++ IP+ ++LG L +++ T I Sbjct: 68 DGIDCVVYT----AAINKANPELMEAVAR-KIPMLTRAELLGQL--------MKNYKTPI 114 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 A++G+ GKTTT M++ L + + I V L + ++ G E ++ Sbjct: 115 AVSGTHGKTTTTSMISHILLA--------ADLDPTISVGGILKAIGGNIRVGKSETFITE 166 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DS 230 E P I+VI I HL F +E+I + + L GT+ +N D D+ Sbjct: 167 ACEYTNSFLHFYPKISVILNIEEDHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGDIDN 226 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI 288 + E+ +L I ++G S D+ E+ + L GK ++ + + Sbjct: 227 YQEIYD----SLDCNVI-TYGSSDMLDYSASNITY-DEKGLVAFDLIKNGKVVDHIQLSV 280 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L ++ +L ++T K + F G +R+ T++D+ Y Sbjct: 281 TGDHNVSNALASIATAELLQIPMETIKKGILSF---SGTDRRFEYKGTFNGVTVVDD-YA 336 Query: 348 ANP----ASMKAAI-----SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +P A++KAA V PH R A + E LS + H+ LA++ + Sbjct: 337 HHPTEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAEA--LSHTDHLVLADIYAA 394 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + +S + ++A HY + + + F++ + GD+++ Sbjct: 395 RETDTLGVSSADL--AEEARKLGTDAHYLPSFEEIEAFLKENCKSGDLLIT 443 >gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter desulfuricans SSM1] gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter desulfuricans SSM1] Length = 413 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 133/331 (40%), Gaps = 66/331 (19%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N D+V L+I V++ +++ + L T I ITGS GK+TT + + L Sbjct: 48 NFDLVVVSPGLNIEKLNVNNKSKVISEYELVFNLVKDKTFIGITGSNGKSTTTFLTSQIL 107 Query: 131 SSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + I K+ AC +IG PL A D D+ + E + +R L VI Sbjct: 108 NKIGLKSVAC-----GNIGYPLGYAIFD-DFDYFVVEFSSFQIDLMRKGEFL---DAGVI 158 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 I P HL + E +K + E L+ DD FF +G K I S Sbjct: 159 INITPDHLDRYKTFENYLKSKVRLSELLK---------DDGFF--------VVG-KDITS 200 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV------VHHG--IGYHMAQNMLMTL 300 + + + C + + + +L+G + V+H +G H N+ L Sbjct: 201 Y---------IANYDLCIDTDFNDYPKLKGDVLYFENFYINVNHFPLVGKHNLVNLSFAL 251 Query: 301 GIVSI---LTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLIDESYNANPASMKA 355 IV+ L DV I+ L +G +RC + + +++S N S K Sbjct: 252 EIVNNFYELKGDVTHLIEDL--------KGLPHRCEIVREIDGILFVNDSKGTNVDSTKT 303 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 A+ L +G+ I +LG + + G+ S+ Sbjct: 304 ALKGL-------DGKIILLLGGLDKDGDFSE 327 >gi|223043543|ref|ZP_03613588.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14] gi|314933892|ref|ZP_07841257.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87] gi|222443031|gb|EEE49131.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus capitis SK14] gi|313654042|gb|EFS17799.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus caprae C87] Length = 437 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F IE++ A ++ ++K I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIEDVYDAFQDMAHNVKK--AI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD + L+A IY +G + D + + + + +V G+ + Sbjct: 201 IAWGDDDYLRKLEADV------PIYYYGFKETDDIYAKNIQITEKGTQFDVYTNGEFYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + +VD AL F + R + + NQ L+ Sbjct: 255 FLSPQFGDHNILNALSVIAISYLEKMNVDNIKDALVTFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + LS++ + L Sbjct: 311 DD-YAHHPREISATIESARKKYPQKEVVAVFQPHTFSRTQAFLDEFA--SSLSKADRVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas naphthalenivorans CJ2] gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 478 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 46/371 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N G L D+ + E Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGANAKLGSG----DYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL L P +AV+T I H+ + + A + + GT L Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMETYGHDFGNLKKAFVDFLRRMPFYGTAILCT 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283 DD + + I S+G ++ A + + Q Q + ++V Sbjct: 218 DDPVVRQIVPEMSC----PITSYGLNEEAQVRAINVRAVGAQMHFTAQRRNGVKLPDLDV 273 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-----ALNQGF 338 V + G H N L + + L KALS F G G+R++ A + G Sbjct: 274 VLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDF---TGVGRRFQSYGELPARDGGR 330 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FT+I E Y +P + A +S P GRR+ + F D +V+S Sbjct: 331 FTVI-EDYGHHPVEVAATLSAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKVISS 385 Query: 399 YN----ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D +L R++ V + +++ + I + DGD+ Sbjct: 386 HADAVLLAEVYAAGETPIVAADGRSLARALRVAGKVEPVFVDSIHDMPQAIVDAAQDGDI 445 Query: 447 VVVKSSNSCGF 457 V+ + S G Sbjct: 446 VMCMGAGSIGL 456 >gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae SmR1] gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 146/367 (39%), Gaps = 43/367 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAQGGLDPTFV--------IGGRLTSAGANAKLGTGEFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ ++ + A E + L G L Sbjct: 160 EADESDASFLN--LTPVIEVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVAVLCL 217 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD E++ S K I ++G ++AD + K + V G + M+V Sbjct: 218 DDPHVREIMPMVS-----KPILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPMQVSL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-------RCALNQGF 338 + G H QN + I L D KAL+ F+ R RY G Sbjct: 273 NQPGMHNVQNACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAGH 332 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+D+ Y +P A I+ P GRR+ VL ++ D +VLS Sbjct: 333 FTLVDD-YGHHPVETAATIAAARGAYP---GRRL-VLAFQPHRYTRTRDLFEDFVKVLSS 387 Query: 399 YNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVV 447 ++ + V+ +G + D + + + ++ +F+ I++ + DGDVV Sbjct: 388 PDVLVLAEVYSAGEAPIVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVVRDGDVV 447 Query: 448 VVKSSNS 454 + + S Sbjct: 448 MTMGAGS 454 >gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter racemifer DSM 44963] gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter racemifer DSM 44963] Length = 644 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 H + P +AV+T I P HL+ ++G+E+ A AKA IF + G NYD+ + Sbjct: 361 HSISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIFRFQTEHGIAVFNYDNPW 412 >gi|291514756|emb|CBK63966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alistipes shahii WAL 8301] Length = 381 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 20/159 (12%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 MV I IPV ++++ A R KA I ITGS GKTTT ++ + Sbjct: 78 MVRKIREAGIPV---------ISEMEFAGRYMGKAKCICITGSNGKTTTTSLIYKIMRDA 128 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTI 192 A G +IG + D D+ + EL L G RF R H+ V+ I Sbjct: 129 GMNVALGG----NIGESFAWSVATGDYDWYVLELSSFQLDGMYRF-----RAHVGVLMNI 179 Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 P HL + + A +K I + + + DD Sbjct: 180 TPDHLDRYDHCFQNYADSKMRIVQNMTSRDWFVYSGDDE 218 >gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] Length = 489 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 91/400 (22%), Positives = 153/400 (38%), Gaps = 38/400 (9%) Query: 9 DLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +LL I+ + G P+ +N + +DSR+ + F A G D H FI + V++G + Sbjct: 5 ELLSKIKAKKLYGTFPE-HINKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRM 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125 +VV+ I L I V D L A V K T +TG+ GKT+ M Sbjct: 64 IVVD----HYIEGLDIGQVVVRDTLQAARIFTQHVMDFPSHKLTTYGVTGTNGKTSVATM 119 Query: 126 LTIALSSIKKTYACIGS----YNNHIG-----VPLTLA-----RMPVDVDFGIFELGMSH 171 + ++ A +G+ YN + P T+ V+ + MS Sbjct: 120 IHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMSS 179 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL----EKTGTIFLNY 227 G T V +A+ T + HL +E KA +F L ++ +N Sbjct: 180 HGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVNG 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + L S + + ++G +N D + K+ ++ ++E+ Sbjct: 240 DDDYSKELIIAS----PREVITYGIEQNTDIKATNIKESIHGIAFTLETPDGNVEITCPY 295 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG NML L + + +A P EGR + L++ + Y Sbjct: 296 IGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLE----VLDRNLPIDLVIDYA 351 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 P M I L P G+ I ++G M +LS++ Sbjct: 352 HTPDGMNKLIDAL---EPFKRGKMIFLIG-MAGERDLSKT 387 >gi|89256891|ref|YP_514253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica LVS] gi|115315270|ref|YP_763993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica OSU18] gi|156503068|ref|YP_001429133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010673|ref|ZP_02275604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica FSC200] gi|254368162|ref|ZP_04984182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. holarctica 257] gi|290953242|ref|ZP_06557863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313535|ref|ZP_06804126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica URFT1] gi|122063246|sp|Q2A1Z9|MURD_FRATH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122324734|sp|Q0BKM8|MURD_FRATO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|166224761|sp|A7NDX4|MURD_FRATF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|89144722|emb|CAJ80053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica LVS] gi|115130169|gb|ABI83356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica OSU18] gi|134253972|gb|EBA53066.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. holarctica 257] gi|156253671|gb|ABU62177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 416 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++V Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNGTTYI 289 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327 >gi|224534179|ref|ZP_03674759.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S] gi|224514604|gb|EEF84918.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S] Length = 468 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139 L+IPV +VLG L++ K I I GS GKTTT L + + + Sbjct: 96 LNIPVLSYPEVLGELSR---------KYYSIGIAGSHGKTTTTAFLGLLFNKLGLNPNVI 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 +GS G +A GI + ++ E + P++ ++T I H+ Sbjct: 147 VGSSVKDFGDNSAIA--------GISNIFIAETCEYKKHFLYFSPNMLILTNIDYEHVDF 198 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNAD 257 F E + A + L+K G + +N DD+ LLK K + K I+SFG ++ Sbjct: 199 FKNYEALEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQ-INRKDINIFSFGSKDLSN 255 Query: 258 FQLR 261 FQ+ Sbjct: 256 FQIN 259 >gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 441 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 17/178 (9%) Query: 69 VVNTD-MVASIGSLS-IPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+N+D ++ S G S IP+ + +++LA + I+A++G+ GKTT + Sbjct: 56 VLNSDVIIKSPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTD 115 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ + + K G +IG PL A + F EL LG+ T R Sbjct: 116 LISKIIKAAHKDSIVSG----NIGCPLADKALKTTETTFITMELSSYQLGD----TPDFR 167 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFELLKA 237 P I+V+ I P HL ++ AK IF +NYDD FE KA Sbjct: 168 PAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINYDDKICRKIFEKTKA 225 >gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella xylaniphila YIT 11841] gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella xylaniphila YIT 11841] Length = 444 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%) Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 MV + IP+ ++++ A R + A +I ITGS GKTTT ++ Sbjct: 79 MVLKVKEAGIPI---------ISEIEFAGRY-THAKMICITGSNGKTTTTSLI---YHIF 125 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTI 192 KK +G N IG L L D D+ + EL L + RF R +IAV+ I Sbjct: 126 KKAGYNVGLAGN-IGQSLALQVAEKDYDYYVIELSSFQLDNMYRF-----RANIAVLLNI 179 Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229 P HL + ++ AK I + E+T DD Sbjct: 180 TPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDD 217 >gi|325684170|gb|EGD26356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 439 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 31/260 (11%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I + GS GKT+T +L L T IG + + D F ++E Sbjct: 107 TSIGVAGSHGKTSTTGLLATVLGEAAPTSFLIGD---------GMGKGVKDSRFFVYEAD 157 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T + H F ++ ASA + +K +F+ Sbjct: 158 -----EYRRHFLAY--HPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKG--LFVW 208 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + ++ K+ Y++G + DFQ + +E + V+ QGK + E Sbjct: 209 GDDERLQKIQPKTAKK-----YTYGLKDSDDFQAFDVVKTTEGAKFHVRAQGKDLGEFTI 263 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N + I D+D K L + G + R + T++ + Sbjct: 264 HLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKY-----TGAKRRFSEKDFGDTVVIDD 318 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P ++A I Q P Sbjct: 319 YAHHPTELRATIQAARQKFP 338 >gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] Length = 552 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 68/311 (21%), Positives = 127/311 (40%), Gaps = 23/311 (7%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 S+G V + GI++ + + EAF AI+G + G +F A ++GA V+ + + Sbjct: 33 RSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAERGAVAVITDAEGAE 92 Query: 77 SIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 S +P+ V+D L L+ ++A TG+ GKT+ +L L Sbjct: 93 IAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGTNGKTSVSHLLEGILGQ 152 Query: 133 IKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLG----EIRFLTHLVRPH- 185 + + HI + ++R+ P +F M G + + H Sbjct: 153 LGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEAVAVEVSAQALTRHR 212 Query: 186 -------IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKA 237 +A T + HL +++ + E AK +F + G + L+ + +A Sbjct: 213 VDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRGVVCLDSASGAEIVARA 272 Query: 238 KSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQN 295 + + I T + S +AD+ + + E + ++ + G+++ V IG HMA N Sbjct: 273 EIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRALTTVVPVIGRHMAAN 332 Query: 296 MLMTLGIVSIL 306 L IV +L Sbjct: 333 --AGLAIVMLL 341 >gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC 35236] gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC 35236] Length = 495 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 53/272 (19%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M+ SSI YA G P V+ G+ + + Sbjct: 126 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGT 165 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I P H+ + G E + Sbjct: 166 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEPDHMDTYQGDFENLKQTFINFLHN 224 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD Q+ ++Q Q ++ Sbjct: 225 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLKR 280 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 K M V + G H A N + + S + D ++AL+ F +G G+R+ N Sbjct: 281 LDKPLMTVTLNAPGRHNALNAAAAVAVASEEGIEDDDILRALAGF---QGTGRRFDFLGN 337 Query: 336 ---------QGFFTLIDESYNANPASMKAAIS 358 +G L+D+ Y +P + A I Sbjct: 338 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIK 368 >gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] Length = 512 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA +V+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 471 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 SKA + ITG+ GK+TT +L L+ K A G+ P LA +P D G++ Sbjct: 122 SKARFVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLG-----PAALA-LPFLSDNGVY 175 Query: 166 ELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 L MS R T H A + + P HL +G++ A AK +F G Sbjct: 176 VLEMSSYMLERLDTLHF---DAACLLNLTPDHLDRHAGMDGYAQAKKRVFTGQTDKDLAV 232 Query: 225 LNYDDSFFELLKAK 238 + DD++ + A+ Sbjct: 233 IGVDDTWCRAIAAE 246 >gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. WCH70] gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70] Length = 490 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 137/365 (37%), Gaps = 45/365 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + F IKG DGHDF AV+ GA V+ + + +PV Sbjct: 23 ITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENGAVAVIAERPL-----DVDVPVI 77 Query: 87 GVDDVLGALNKLAVA------ARLR--------SKATIIAITGSVGKTTTKEMLTIALSS 132 V D A+ LA A RL K T I + + K+ I Sbjct: 78 VVRDSRRAMAMLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEHIARKANKKTGLIGTVH 137 Query: 133 IK---KTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMS--HLGEIRFLTHLVRPH 185 IK TY + + + T +M VD VD + E+ H+G + H Sbjct: 138 IKIGDHTYPTKNTTPESLLLQRTFKQM-VDEGVDVAVMEVSSHALHMGRV----HGCDYD 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 +AV T + HL +EE +AK +F L E+ LN DD + K + Sbjct: 193 VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASKYYKHMT 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ ++G ++D +K ++ ++ V IG N+L Sbjct: 253 AA----SVITYGIETDSDIMAKKIDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAA 308 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + + ++A+ GR + Q F ++D Y P S++ + Sbjct: 309 VSACLVSGIPLPVIVEAIEEISGVAGRFE--TVDEGQNFTVIVD--YAHTPDSLENVLKT 364 Query: 360 LSQIS 364 + Q + Sbjct: 365 IRQFA 369 >gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sinaloensis DSM 21326] gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sinaloensis DSM 21326] Length = 441 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 87/363 (23%), Positives = 148/363 (40%), Gaps = 60/363 (16%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 +IAITGS GK+T ++ + + K +IGVP L L P D + EL Sbjct: 112 VIAITGSNGKSTVTDLAGV----VAKAAGLQVGVGGNIGVPALELLEQPAD--LYVLELS 165 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 L T + A ++ H+ + G+E AK IFE E + +N Sbjct: 166 SFQLET----TSSLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEHAE---SCIVNAQ 218 Query: 229 D--SFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D ++ E K + +L KT +S +N ++ C + + L + +V Sbjct: 219 DKATYPEHFKGELVEFSLTDKTQFSVQVQQNREY------LCQDNLPI---LATDELTLV 269 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTL 341 G H N L+ L ++ + DV + AL ++ G +RC A N G Sbjct: 270 ----GRHNVANALVVLALLDCVGIDVSQGLSALKSYN-----GLTHRCQIVADNHG-VKW 319 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +++S N AS AA+S L+ G+ ++G + + + S+ LA VL+ N+ Sbjct: 320 VNDSKATNVASTLAALSGLTLT-----GKLYLLVGGVGKGADFSE-----LAPVLAKLNV 369 Query: 402 SHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 G +AL + + H M + + + L GD+V++ S +C + Sbjct: 370 QLCCFGEDGAQFMALHPSAKQFTH------MQEIVEWAKPQLTTGDMVLL--SPACASFD 421 Query: 460 LIN 462 N Sbjct: 422 QFN 424 >gi|282917000|ref|ZP_06324758.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|282319487|gb|EFB49839.1| UDP-N-acetylmuramate-alanine ligase [Staphylococcus aureus subsp. aureus D139] Length = 437 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + D+ +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] Length = 479 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 36/341 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+ DSR I F A++G DGH FI A++KGA L++V+ ++ G + + Sbjct: 22 TGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKN 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + LG L + I+ +TG+ GKTTT +L L K A G+ I Sbjct: 82 LRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKI 138 Query: 148 GVP-----------LTLARM-----PVDVDFGIFELGMSH---LGEIRFLTHLVRPHIAV 188 G L L RM +++ I E+ SH LG + L A+ Sbjct: 139 GKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVS-SHALELGRVNMLEF----DGAI 193 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E+ AK ++F L LN DD + L+ + H + Sbjct: 194 FTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVLNVDDEYGRRLQEEFHGI------ 247 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S+G +K A+ Q + + +E+ L GK E +G N+L ++ +V L Sbjct: 248 SYG-TKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGM 306 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + + GR + C Q + +ID ++ + Sbjct: 307 SEEEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 345 >gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria AMMD] gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria AMMD] Length = 465 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 38/364 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD + +++ S K + +G S +A + + V +G++ + VV Sbjct: 218 DDPNVRQIIPFIS-----KPVVRYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLID 343 + G H QN L + I + L D +AL+ F+ R +RY + + G +TLID Sbjct: 273 NLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLID 332 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400 + Y +P M A ++ P GRR+ VL ++ D VLS + Sbjct: 333 D-YGHHPVEMAATVAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVDALV 387 Query: 401 ISHVWLSGFHVL--ALKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSS 452 ++ V+ +G + A DAL R++ + ++D + + +GDVV+ + Sbjct: 388 LTEVYAAGEAAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARNGDVVITMGA 447 Query: 453 NSCG 456 S G Sbjct: 448 GSIG 451 >gi|283770818|ref|ZP_06343710.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|283460965|gb|EFC08055.1| UDP-N-acetylmuramate-L-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 437 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 53/330 (16%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L + V +D LG ++ + T +A+TG+ GKT+T +L+ ++ KKT Sbjct: 82 QLKLDVVSYNDFLG---------QIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG +G+P + D+ FE E R FL++ +P A++T I H Sbjct: 133 IGD-GTGMGLP--------ESDYFAFE-----ACEYRRHFLSY--KPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F I ++ A E+ ++K G I DD ++A IY +G + D Sbjct: 177 DYFKDINDVFDAFQEMAHNVKK-GIIAWG-DDEHLRKIEADV------PIYYYGFKDSDD 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + +V + G+ + + G H N L + I + D+ +A Sbjct: 229 IYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDLTNIKEA 288 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-------- 368 L F + R A NQ +I + Y +P + A I + PH E Sbjct: 289 LETFGGVKRRFNETTIA-NQ----VIVDDYAHHPREISATIETARKKYPHKEVVAVFQPH 343 Query: 369 --GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 R A L + E LS++ + L E+ Sbjct: 344 TFSRTQAFLNEFAE--SLSKADRVFLCEIF 371 >gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] Length = 509 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 41/273 (15%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 +I+G + + + +S DSR FF KG ++ +++ A+++G V Sbjct: 31 SIKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQ 88 Query: 73 DMVAS-IGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEM 125 S +G + V D+ A+ LA+A ++K +I TG+ GKTT TK + Sbjct: 89 PYENSAVGII------VTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAI 142 Query: 126 L-------TIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL---- 172 L T LS++ T + +H+ P L L RM + E GM+HL Sbjct: 143 LDHTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEV 198 Query: 173 GEIRFLTHLVRP---HIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 + T V + + I+P H+S ++ K ++ + + T+ LN+ Sbjct: 199 SSQAYKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNH 255 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + +F+LLK + I TI ++G+S+ +++Q+ Sbjct: 256 ESDYFDLLKETADLFQIPTI-TYGRSEKSNYQV 287 >gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21] gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21] Length = 463 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 37/290 (12%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACI 140 +PV DVL A L +K IA+ G+ GKTTT ML++ + I T Sbjct: 91 VPVIHRSDVL---------AYLMNKHKGIAVAGAHGKTTTSSMLSLITCDNGIDPTVVVG 141 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G NN L + D+ + E S ++F RP++AVIT I HL ++ Sbjct: 142 GVVNN-----LGTNSVNGKSDYVVAEADESDGSFLKF-----RPYLAVITNIENDHLDHY 191 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT---IYSFG-KSKNA 256 E+I A + + +++ G L YD+ K +G KT + S+G +K+A Sbjct: 192 GTEEKIQEAFQQFVDQVKEQGKAILCYDNE-------KVRRVGEKTATEVISYGIDAKDA 244 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIK 315 D++ + + + ++ +GK + H + G H N L L L V+ + Sbjct: 245 DYRAENIEYGKDGTHYDILFRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEEISR 304 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +L F G +R+ ++D+ Y +P +K + Q P Sbjct: 305 SLEKF---TGAKRRFETKGRVRGIWVVDD-YAHHPTEIKVTLKAARQTQP 350 >gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1] Length = 451 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 33/287 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74 V GI + + +IA + G H G+D + L A + G+V V N D+ Sbjct: 10 VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPSGVDVANFDI 64 Query: 75 VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V ++ S P+ LG L + + +A ++ + +AITG+ GKTTT +L Sbjct: 65 VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188 L + K + + +G + A + V+ G +L + + + FL + P + + Sbjct: 125 LCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLSPQVVI 175 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I H++ ++ + F E +I+L DD L AK + L K + Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQLD-KNVT 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S+G S NAD Q+ + E + +++ +G + G + QN Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGKYNVQN 281 >gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] Length = 486 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 ++GIS D+R+I P E F A+ G DGH F+ AV+KGA V+ + Sbjct: 23 ISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICH 67 >gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202] gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202] Length = 491 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 101/445 (22%), Positives = 177/445 (39%), Gaps = 85/445 (19%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + A + IPV ++L L R R IAI G+ Sbjct: 81 RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 131 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M+ SSI YA G P V+ G+ + +H LG Sbjct: 132 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 171 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +A++T I H+ + G E + L G Sbjct: 172 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281 L DD L + +G + + ++G S++AD ++ +++QC Q + Q + + Sbjct: 231 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 286 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332 V + G H A N + S D + ++AL F +G G+R+ Sbjct: 287 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGF---QGTGRRFDFLGEFSLQHV 343 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G L+D+ Y +P + A I P RR+ ++ ++ + D Sbjct: 344 NNKPGKVMLVDD-YGHHPTEVDATIKAARAGWPD---RRLVMVFQPHRFTR-TRDLYDDF 398 Query: 393 AEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV------- 442 A VLS ++ V+ +G H + D+ + +D + + ++L Sbjct: 399 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFL 458 Query: 443 -DGDVVVVKSSNSCGFYRLINLLLE 466 +GD+++ + + + G R+ +L E Sbjct: 459 QEGDLILTQGAGNIG--RVARVLAE 481 >gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60] Length = 487 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 101/445 (22%), Positives = 177/445 (39%), Gaps = 85/445 (19%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + A + IPV ++L L R R IAI G+ Sbjct: 77 RDASVVVVSTAIAADNPEIIAAREARIPVIRRAEMLAEL------MRFRHG---IAIAGT 127 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M+ SSI YA G P V+ G+ + +H LG Sbjct: 128 HGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGS 167 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +A++T I H+ + G E + L G Sbjct: 168 SRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 226 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SM 281 L DD L + +G + + ++G S++AD ++ +++QC Q + Q + + Sbjct: 227 AVLCIDDPVIRELLPR---VG-RQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRL 282 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------RC 332 V + G H A N + S D + ++AL F +G G+R+ Sbjct: 283 AVTLNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGF---QGTGRRFDFLGEFSLQHV 339 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G L+D+ Y +P + A I P RR+ ++ ++ + D Sbjct: 340 NNKPGKVMLVDD-YGHHPTEVDATIKAARAGWPD---RRLVMVFQPHRFTR-TRDLYDDF 394 Query: 393 AEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV------- 442 A VLS ++ V+ +G H + D+ + +D + + ++L Sbjct: 395 ANVLSQVDVLLMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFL 454 Query: 443 -DGDVVVVKSSNSCGFYRLINLLLE 466 +GD+++ + + + G R+ +L E Sbjct: 455 QEGDLILTQGAGNIG--RVARVLAE 477 >gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas sp. 3As] Length = 469 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 157/377 (41%), Gaps = 61/377 (16%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG N GV L + ++ + E Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGRLNSAGVNAKLGQG----EYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL L P +AV+T I H+ + + A + L G L Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCV 217 Query: 228 DDSFFELLKAKSHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ------L 276 DD+ GI K I S+G +++A Q+R +E + M + Sbjct: 218 DDAAVR---------GIMPFVSKPITSYGFAEDA--QVRAIDVRAEGAQMHFTVLRRNGV 266 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR---- 331 Q + V + G H QN L + + + L D D AI +AL+ F G G+R++ Sbjct: 267 QLPPLAVTLNLPGRHNVQNALAAIAVATELNVD-DAAIQRALAGF---TGVGRRFQRYGE 322 Query: 332 -CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 A + G FTLID+ Y +P M A ++ P GRR+ VL ++ Sbjct: 323 VAAHHGGHFTLIDD-YGHHPVEMAATLAAARGAFP---GRRL-VLAFQPHRYTRTRDLFE 377 Query: 391 DLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQS 439 D +VL + ++ V+ +G L D +L R++ V + E + L I Sbjct: 378 DFVKVLGEADAVLLAEVYSAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILE 437 Query: 440 SLVDGDVVVVKSSNSCG 456 +GDV++ + S G Sbjct: 438 MAREGDVLICMGAGSIG 454 >gi|187932076|ref|YP_001892061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|226711911|sp|B2SDR8|MURD_FRATM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|187712985|gb|ACD31282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. mediasiatica FSC147] Length = 416 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++V Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIIKKVNGTTYI 289 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327 >gi|50913664|ref|YP_059636.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS10394] gi|139474372|ref|YP_001129088.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes str. Manfredo] gi|59798145|sp|Q5XDR0|MURC_STRP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224740|sp|A2RGA7|MURC_STRPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|50902738|gb|AAT86453.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS10394] gi|134272619|emb|CAM30886.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 442 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G + DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum indicum S5] gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum indicum S5] Length = 439 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + IIA+TG+ GK+T ++ L + G +IG+P L + + + E Sbjct: 98 EGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAG----NIGLP-ALDTLALGCQVTVLE 152 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L I+ RP IAV+ + HL+ + E AK IF LN Sbjct: 153 LSSFQLETIQTF----RPDIAVLLNVTEDHLNRYDTFEHYVDAKERIFLNQTAEDWCVLN 208 Query: 227 YDDSFFELLKAKSHALGIKTIYS 249 +DD L + +H + +S Sbjct: 209 HDDPVIRTLTSDNHIPARRVFFS 231 >gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 458 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 27/282 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLT 152 L++ + ARL ++ +A+ G+ GKTTT M+ +A L TY IG +G Sbjct: 93 LHRSQMLARLLNERNGVAVAGAHGKTTTSSMIALAMELCGTDPTY-IIGGEIMDMGTNAK 151 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKA 211 + G + + + FL + P + V+T I HL N+ G + A Sbjct: 152 AGQ-------GKCVVAEADESDGSFLQYY--PSLGVVTNIEADHLENYGGDFNRLKEAYV 202 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 + ++ G + DD L + + I ++G N D+ R+ + Sbjct: 203 QFLNQIKPDGKAVVCGDDPNIRELLPRVQSPTI----TYGIETNCDYTAREIELGDRCVT 258 Query: 272 MEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 ++ + + V + G H N + T+ + D +KAL FH G +R+ Sbjct: 259 FKMYQGDRELGTVELSVPGRHNVYNAMATVIVCMEAGIPFDEVVKALRHFH---GAKRRF 315 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + + +ID+ Y +P ++A I+ + G+RI Sbjct: 316 QVLGEKNGILIIDD-YAHHPTEIQATIA-----AAKATGKRI 351 >gi|56707593|ref|YP_169489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670064|ref|YP_666621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456664|ref|ZP_03665137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370111|ref|ZP_04986117.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. tularensis FSC033] gi|254874414|ref|ZP_05247124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|62900472|sp|Q5NHK3|MURD_FRATT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595657|sp|Q14J05|MURD_FRAT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|54113905|gb|AAV29586.1| NT02FT1066 [synthetic construct] gi|56604085|emb|CAG45084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320397|emb|CAL08467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis FSC198] gi|151568355|gb|EDN34009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. tularensis FSC033] gi|254840413|gb|EET18849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158751|gb|ADA78142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis NE061598] Length = 416 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKL----NLAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK ++Q+ + + K +++V Sbjct: 202 VYD----------VHN-GIKYA--------GEYQIIRGAIYRNST--------KLLDIVE 234 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKF-----KGLEHRCKIVKKVNSTTYI 289 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327 >gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii OSU 85-389] gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii OSU 85-389] Length = 450 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 20/139 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+TG+ GK+TT +++ LS Y G +IGVP+ A+ G + L Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPIAG----NIGVPVLQAKASK----GGYVLE 156 Query: 169 MSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S F LV+ IAV+ I P HL +E +AK++IF+ ++K + Sbjct: 157 LS-----SFQLDLVKTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGII 211 Query: 226 NYDDSF----FELLKAKSH 240 N D+ + F L+ K H Sbjct: 212 NIDNDYCHEIFTNLQQKHH 230 >gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 540 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 13/168 (7%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN----NHI 147 + AL+++A A +A ++AITG+ GKTTT + K A G+ + + Sbjct: 132 ISALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAGNISPAALEKL 191 Query: 148 GVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 L LA VD+ D + EL L TH + A + I HL ++ Sbjct: 192 MNCLDLADQIVDMSDVWVLELSSFQL----VYTHTLNATAATVLNITQDHLDWHGDMQAY 247 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 A AK+ IF LN DDS L + + K+I +FG ++ Sbjct: 248 AEAKSRIFGA---DTVCILNRDDSLVMGLLSDEQKVD-KSIVTFGSNR 291 >gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp. MS 92-3] gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp. MS 92-3] Length = 438 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A IIAITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A I + H+ + G+++ +AK I+E + T Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + +++KAL+ F G R++ L+ Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 315 WINDSKATNVGSTEAALNGL 334 >gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 S 142 + Sbjct: 135 T 135 >gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105] gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105] Length = 466 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 150/367 (40%), Gaps = 44/367 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L G F + Sbjct: 108 IAVAGTHGKTTTTSLVASILAEGKLDPTF-VIGGRLNSAGANAKLGT-------GEFMVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P IAVIT I H+ + + A E + L G + Sbjct: 160 EADESDASFLNLM--PVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVAAVCV 217 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD E++ S KTI ++G S+ A + + C Q V + ++ +++ Sbjct: 218 DDPCVREIMPFVS-----KTIVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDITL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFFT 340 + G H +N L + + + + + + AL F+ G G+R++ A G F Sbjct: 273 NLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFN---GVGRRFQHYGEVAAKEGGHFL 329 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---S 397 ++D+ Y +P M A ++ P +R+ + F D +VL Sbjct: 330 VVDD-YGHHPVEMAATLAAARGAYPD---KRLVLAFQPHRYTRTRDCFE-DFVKVLGTPD 384 Query: 398 LYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVV 449 L +S V+ +G + D +L R++ V + E M+ + I + DGD+V+ Sbjct: 385 LVILSEVYSAGEAPIVAADGRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLVIT 444 Query: 450 KSSNSCG 456 + S G Sbjct: 445 MGAGSIG 451 >gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans C54] Length = 468 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 55/374 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ +A + T+ IG N G L + D+ + E Sbjct: 108 IAVAGTHGKTTTTSLVASILAAGDLDPTF-VIGGRLNSAGANARLGQG----DYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL L P +A++T I H+ + + + SA E + L G+ L Sbjct: 163 ES---DASFLNLL--PVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCT 217 Query: 228 DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------- 279 DD+ E++ S + I S+G N D +R ++ ++ + M +Q Sbjct: 218 DDANVREIMPFVS-----RPITSYG--LNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLP 270 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------- 331 ++V + G H +N L + + + L + AL+ F +G G+R+ Sbjct: 271 PLQVELNLPGLHNVRNALAAIAVATELGVSDEAIRDALASF---KGVGRRFTQTGEFPVP 327 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 G FT+ID+ Y +P M A ++ P RRI + F D Sbjct: 328 AVHGGGTFTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDCFE-D 382 Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSS 440 VL + ++ V+ +G L D AL R++ V + E + L + Sbjct: 383 FVRVLGTADAVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDF 442 Query: 441 LVDGDVVVVKSSNS 454 + DGDVV+V + S Sbjct: 443 VRDGDVVIVMGAGS 456 >gi|294501560|ref|YP_003565260.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551] gi|295706908|ref|YP_003599983.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319] gi|294351497|gb|ADE71826.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551] gi|294804567|gb|ADF41633.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319] Length = 433 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 38/266 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T +A+TG+ GKT+T ML + + T IG GV D + FE Sbjct: 103 TSVAVTGAHGKTSTTGMLAHVIQGAEPTSYLIGDGTGK-GVK--------DSKYFAFE-- 151 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H F+ I+++ SA E+ L+ I Sbjct: 152 ---ACEYRRHFLSYT--PDYAIMTNIDFDHPDYFANIDDVFSAFQEM--ALQVKKGIIAC 204 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283 DD + ++AK + +Y +G + DFQ R + + + +V ++ S E+ Sbjct: 205 GDDEHLQQIQAK-----VPVLY-YGLGEENDFQARNIVKSTTGTTFDVFVRNTFHASFEI 258 Query: 284 VHHGIGYHMAQNMLMTLGIVSIL-TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G G H N+L L ++++ ++D A+ F +G +R+ N G LI Sbjct: 259 P--GYGDH---NILNALSVIALCHYEEIDVAV-LQERFKTYQGVKRRF-SEKNVGKQVLI 311 Query: 343 DESYNANPASMKAAISVLSQISPHGE 368 D+ Y +P + A IS Q P+ E Sbjct: 312 DD-YAHHPTEINATISAARQKYPNRE 336 >gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae R3021] gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 22.4-21] Length = 437 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 86/401 (21%), Positives = 157/401 (39%), Gaps = 74/401 (18%) Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124 ++ +DM+ L++ + L A + + + R +K I+ ITGS GK+T Sbjct: 63 LLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + T+ K +G N IG+P L+ + D + + EL L T+ ++ Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A + + H+ + +E+ AK I+ K G LN +D Sbjct: 173 AAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQ 294 +FG+++N + + S W++ + GK +V +G H Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L + + ++D+ AL F +G R++ A I++S N S Sbjct: 272 NILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGIRWINDSKATNVGSTV 328 Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AA++ L + EG+ +LG D E+ EL HI + + L+ Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI----ICYCFGRDGALLAK 379 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 F S + ETM+ F++ +L GD+V++ Sbjct: 380 F-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409 >gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 438 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 79/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQEPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 156 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AQQTETMEEAMRLLAPRVQPGDMVLL--SPAC 414 >gi|21909788|ref|NP_664056.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS315] gi|28896519|ref|NP_802869.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes SSI-1] gi|25453115|sp|Q8K8J5|MURC_STRP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|21903973|gb|AAM78859.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus pyogenes MGAS315] gi|28811773|dbj|BAC64702.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus pyogenes SSI-1] Length = 442 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G + DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|15674501|ref|NP_268675.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes M1 GAS] gi|56808749|ref|ZP_00366467.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Streptococcus pyogenes M49 591] gi|71910104|ref|YP_281654.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS5005] gi|94987921|ref|YP_596022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94991805|ref|YP_599904.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS2096] gi|94993681|ref|YP_601779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes MGAS10750] gi|209558848|ref|YP_002285320.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes NZ131] gi|25008814|sp|Q9A1C7|MURC_STRP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224736|sp|Q1JDE8|MURC_STRPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224737|sp|Q1JNC1|MURC_STRPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224739|sp|Q1J8C6|MURC_STRPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226706332|sp|B5XJW3|MURC_STRPZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|13621603|gb|AAK33396.1| putative UDP-N-acetyl muramate-alanine ligase [Streptococcus pyogenes M1 GAS] gi|71852886|gb|AAZ50909.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS5005] gi|94541429|gb|ABF31478.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS9429] gi|94545313|gb|ABF35360.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS2096] gi|94547189|gb|ABF37235.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes MGAS10750] gi|209540049|gb|ACI60625.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pyogenes NZ131] Length = 442 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G + DF + + S +V+ QG+ + H + + N+L T I ++ A Sbjct: 223 GFEEGNDFIAYDITRTTNGSDFKVKHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22] gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22] Length = 461 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 26/210 (12%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132 +A L IPV D L ARL IA+ G+ GKTTT ML ++L Sbjct: 86 LARAAELGIPVVHRSDAL---------ARLMDGLRPIAVAGTHGKTTTTSMLAVSLGELG 136 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 +K +YA G + VP + A G E+ ++ E H P +A++ + Sbjct: 137 LKPSYAIGGDLD----VPGSNAL------HGDGEIFVAEADESDRSFHKYAPEVAIVLNV 186 Query: 193 APAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 H +N++ ++EI A E F G + GT+ ++ D L ++ G++ + ++G Sbjct: 187 ELDHHANYASMDEI-YASFETFAGRIVPGGTLVISADHEGARELTSRLS--GVRVV-TYG 242 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + ++AD ++ +S + V L G+ + Sbjct: 243 EREDADVRVLSVVAQGLKSEVTVLLDGQEI 272 >gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 442 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 21/162 (12%) Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 ++LG + A AR A ++AITGS GK+T +T + + + + + G+ Sbjct: 92 EILGDIELFAREAR----APVVAITGSNGKST----VTALVGEMARAAGLNVAVGGNFGI 143 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P DV+ + EL L T + P A + I+ HL + +E+ A+A Sbjct: 144 PALDLLNDADVELYVLELSSFQL----ETTESLAPVAATVLNISADHLDRYESLEDYAAA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 K IF +T T +N DD + S A G + + SFG Sbjct: 200 KERIF---RRTETAVINRDDP-----RVWSMAGGARRV-SFG 232 >gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens T118] gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens T118] Length = 477 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 152/378 (40%), Gaps = 45/378 (11%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 A L T IAI G+ GKTTT ++ +A + + T+ IG N GV L + Sbjct: 99 AELMRLKTGIAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGVNARLGQG--- 154 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218 D+ + E S + FL + P +AV+T I H+ + + A + + Sbjct: 155 -DYIVVEADES---DASFLN--LSPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMP 208 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 GT L DD + + I S+G + A+ + + Q VQ + Sbjct: 209 FYGTAILCTDDPAVRDIVPQVTC----PISSYGFEEGAELRAVNVRAVDGQMHFTVQRRN 264 Query: 279 ----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR--- 331 ++VV + G H N L + + L KAL+ F +G G+R++ Sbjct: 265 GVVLPDLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGF---KGVGRRFQRYG 321 Query: 332 --CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 A + G FTLID+ Y +P M A ++ P GRR+ + F Sbjct: 322 EVRAQDGGTFTLIDD-YGHHPVEMAATLAAARGAFP---GRRLVLAFQPHRFTRTRDCFE 377 Query: 390 IDLAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQ 438 D +V++ + ++ V+ +G + D L R++ V + + + + I Sbjct: 378 -DFIKVIAQADAVLLAEVYGAGEAPIVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIA 436 Query: 439 SSLVDGDVVVVKSSNSCG 456 + DGDVV+ + S G Sbjct: 437 DNARDGDVVLCMGAGSIG 454 >gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4] gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4] gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1] Length = 454 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 149/375 (39%), Gaps = 48/375 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLAR 155 LA RLR T IAI G+ GKTTT LT A+ + K IG N G L Sbjct: 98 LAELMRLR---TGIAIAGTHGKTTTTS-LTAAIFDVAGKDPTVIIGGRLNAYGANARLGE 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 G + + + + FL P + V+T + H+ ++G +EI A Sbjct: 154 -------GEYLIAEADESDGSFLCLF--PIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMN 204 Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWM 272 + G + DD L + K + Y FGK D LR + C+E S Sbjct: 205 KVPFYGANVVCGDDPGVRRLLPQVKRRVV----TYGFGK----DNALRAEVTSCAETSVF 256 Query: 273 EVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V L+G + VH G G H N L +G+ + I+ L+ F G G+R+ Sbjct: 257 TVFLRGGRLGEVHLGQPGRHNILNALAAIGVALEAGISPEHCIEGLARFG---GVGRRFE 313 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEM 381 + T++D+ Y +P + A ++ + PH R A+ G+ C++ Sbjct: 314 RRGERDGVTVVDD-YGHHPVEIAATLATARSVYPDRRLVVVFQPHRFSRTQALFGEFCKV 372 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQS 439 E +D + +Y S + G +L + + + V Y ++ D + + Sbjct: 373 FE-----PVDKLLLTEIYPASEKPIPGVSGQSLAQGIRQVSNTDVTYYQSFDEILAALPG 427 Query: 440 SLVDGDVVVVKSSNS 454 L GDV++ + S Sbjct: 428 VLRPGDVLLTLGAGS 442 >gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649] gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649] Length = 488 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 13/160 (8%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT MLT+AL + + ++A G G A DV F + E Sbjct: 123 VAVAGANGKTTTTSMLTVALQAADLDPSFASGGELT---GQGTNAAWTGGDV-F-VVEAD 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P +A++T + P HL + + + A A + + G + D Sbjct: 178 ES---DGSFLVY--GPEVAIVTNVQPDHLDFYGTFDNVQRAYASFADSIRSDGLLVACAD 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 DS L A + A+G + ++G AD L + E Sbjct: 233 DS-GSLFLASNAAIGGTRVLTYGFDDTADLTLADHRADDE 271 >gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 494 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR + F AI G + DG +I A++ GA V+ + + G + Sbjct: 27 VKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACPLNTHGKTEVRDN 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P+ VDD+ L+ LA +IA+TG+ GKTT +++ + A +G+ Sbjct: 87 VPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWFELVSCHAAVLGT 146 Query: 143 YNN 145 N Sbjct: 147 TGN 149 >gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 457 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 141/365 (38%), Gaps = 40/365 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA RLR IAI G+ GKTTT + I IG L + Sbjct: 98 LAELMRLRQG---IAIAGTHGKTTTTSLTASIFDEAGLDPTVI------IGGRLNVYGAN 148 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + G + + + + FL L P I V+T + HL ++ E I SA + + Sbjct: 149 AHLGHGEYLIAEADESDGSFLCLL--PIINVVTNVDEDHLDHYKTREAINSAFVQFMNNV 206 Query: 218 EKTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ---LRKWKQCSEQSWME 273 G I D ELL + + ++G +++ + L + Q W+ Sbjct: 207 PFYGLNIVCGDDPGVLELLPQVK-----RPVLTYGFAEDNALRAVPLESGRISRFQVWLH 261 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + G EV G H N L ++G + + L F +G G+R+ Sbjct: 262 DEKLG---EVSLPQPGRHNILNALASIGAAMEVGISFEKCAAGLCGF---KGVGRRFEFK 315 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQ 386 + T++D+ Y +PA + A ++ Q+ EGRRI GE + Sbjct: 316 GEKQGVTVVDD-YGHHPAEIAATLATARQVF---EGRRIVAAFQPHRFSRTEAHFGEFCK 371 Query: 387 SF-HIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD 443 F ++D + +Y S + G +L + + S V Y +T+D L + L + Sbjct: 372 VFNNVDQLLLTEIYAASENPIPGVSGQSLAQGIRQVSSTPVEYFQTLDDLARALPDILQE 431 Query: 444 GDVVV 448 GDV++ Sbjct: 432 GDVLL 436 >gi|220929148|ref|YP_002506057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium cellulolyticum H10] gi|254766044|sp|B8I2T4|MURD_CLOCE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|219999476|gb|ACL76077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium cellulolyticum H10] Length = 465 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMP--VDVDFGI 164 A + A+TGS GKTTT ++ LS ++ + C +G +IG PL L+++ + D I Sbjct: 117 AQVFAVTGSDGKTTTTTLIYKTLS--EEGFKCWLGG---NIGTPL-LSKIDDVAETDKVI 170 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L I+ P +AVIT I+P HL ++E AK IF + + Sbjct: 171 LELSSFQLMTIKDC-----PSVAVITNISPNHLDVHKSLQEYIDAKKNIFINQNENDKLV 225 Query: 225 LNYDDS 230 LN+D+ Sbjct: 226 LNFDNE 231 >gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens SH164] gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens SH164] Length = 482 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 160/392 (40%), Gaps = 54/392 (13%) Query: 56 FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI HA KGA ++VV+T + V + IPV ++LG L R R Sbjct: 71 FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGEL------MRYRHG 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT +LT L+ + TY IG N GV L + Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTY-VIGGLLNRTGVNAALG-------ASRY 173 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL P A++T I H+ + G + + + L G Sbjct: 174 IVAEADESDASFL-HL-EPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAV 231 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283 + DD+ + + + + ++G + + D + +Q +S V + + + + Sbjct: 232 VCGDDANIREIMPRI----ARPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRL 287 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338 + G H N L +G+ + D AI +AL F G G+R++ L QG Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVS-DAAIGRALEGF---SGVGRRFQVQGEFGLEQGT 343 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+D+ Y +P ++A I Q P RR+ ++ F D +VLS Sbjct: 344 VKLVDD-YGHHPKEVEATIKAARQSHPD---RRLVMMFQPHRFSRTRDCFD-DFVDVLSQ 398 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH 425 + + V+ +G + D +L RSI + Sbjct: 399 VDQLLLLEVYPAGEKPIVGADSRSLARSIRLR 430 >gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] Length = 505 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 151/405 (37%), Gaps = 45/405 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V + DSR P F A++G H DGH ++ A +GA VV + L + Sbjct: 22 MVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAVAAVVEEWPSQDVPGLRT-I 80 Query: 86 FGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V D AL A+AAR S +I +TG+ GKTTT ++ L + IG Sbjct: 81 ARVSDTRVALA--AIAARFYGHPASDLGLIGVTGTDGKTTTTFLIDAILRTAGYRTGLIG 138 Query: 142 SYNNHIG-----------------VPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVR 183 + IG V LARM V + + E SH E+ L H Sbjct: 139 TVALRIGDEFVAHDLRQTTPESLDVQAFLARMRATGVAWAVVE-ATSHGLELHRLDHC-- 195 Query: 184 P-HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT------IFLNYDDSFFELLK 236 P IAV+T + HL IE AK + E + I LN DD E + Sbjct: 196 PFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFVRDRPERAYPRGIVLNADD---EGAR 252 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + G I + + A + + + ++ ++ +V G +N Sbjct: 253 SLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRLRYGDQAADVHLRLFGLWNVENA 312 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L G +L +D + L GR C Q F ++D Y P S + Sbjct: 313 LAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDC--GQPFRVIVD--YAHTPKSFERV 368 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + ++ GR I V G E + + +A L+ + + Sbjct: 369 LPLARSLA---RGRVIVVFGSAGERDRIKRRLQGAIAARLAEFAV 410 >gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] Length = 520 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 74/330 (22%), Positives = 123/330 (37%), Gaps = 36/330 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + ++ DSR++ P + F A G +D + I A+ G V+ + IP Sbjct: 25 IQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEKQGFSWKPEWKIPNL 84 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 G+ + K+A V ++ ITG+ GKTT + ++ + A IG+ Sbjct: 85 GISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTAIIGTLG 144 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGE-IRFLTHLVRPH-------------IAVIT 190 + L A + +L +L R L H IAV+T Sbjct: 145 HGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEFSIAVLT 204 Query: 191 TIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + HL ++ A+AKA++F EGL+ LN D+ L S L K + Sbjct: 205 NLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHA---VLNLDEVLGVEL---SQQLAWKDVS 258 Query: 249 SFGKS-KNADFQLR-----------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 G + D R + ++ +V+ + + + G + A N+ Sbjct: 259 IIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNL 318 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGR 326 L L + D+D AI AL P GR Sbjct: 319 LAVLATLLASNVDLDDAITALQQVQPIPGR 348 >gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1] gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1] Length = 467 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + +A Q+R + M ++ +++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 V + G H QN L + I + L +AL+ F+ R +RY G Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 534 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 93/240 (38%), Gaps = 37/240 (15%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IG 79 G ++G+S DSR P + F IKG DGH ++ + KG VV D ++S + Sbjct: 52 GEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVSAVVAQYDCLSSEQKKLLT 111 Query: 80 SLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + IPV V D A LA LR + ++L+ + Sbjct: 112 QIDIPVILVTDSRKAFAILASKYYNYPGDSLRVTGVTGTKGKTTTVNLIDKLLSEG-KEV 170 Query: 134 KKTYACIGSYNNHIG----VPLTLARMPVDVD--FGIFE-LGMSHLGEIRFLTHLVRP-- 184 K IG+ N I T P++++ G E G SH+ + +H + Sbjct: 171 K--TGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASHV-TLEVSSHAISQLR 227 Query: 185 ------HIAVITTIAPAHLSNFSGIEEIASAKAEIF-------EGLEKTGTIFLNYDDSF 231 IAV T +AP HL + ++E K IF E +K +N DD + Sbjct: 228 IAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEKNDKPKLAVINLDDKY 287 >gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] Length = 484 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 20/223 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S+DSR + AF A+KG DG+ +I + KG LV+ ++ VF Sbjct: 28 IESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFED----QKRVF 83 Query: 87 GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+ LA K II ITG+ GKT+ + L + +G+ N Sbjct: 84 YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 I P +D +S+ + + L V H +A+ + + Sbjct: 144 GI-YPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 202 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + HL ++ AKA++F+ ++ +N DD + + L Sbjct: 203 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 244 >gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens KN400] Length = 462 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 45/278 (16%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT M+ L+ I T IG N +G L + G F + Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P IAV+T I HL ++ GIE+I + + G L Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 +D + E+L K ++G S AD + ++L+G + V H Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261 Query: 287 GIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQ 336 GY M A N+L L +++ ++D + F G G+R++ Sbjct: 262 YKGYRMGEVSFSMPGAHNVLNALACIAV-AMELDVPFSQIQEGFATFGGVGRRFQVKGEV 320 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 T++D+ Y +PA ++A ++ P RR+ V Sbjct: 321 NGITVVDD-YGHHPAEIRATLAAGKSGWPE---RRLVV 354 >gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] Length = 512 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA +V+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens PCA] gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA] Length = 462 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 45/278 (16%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT M+ L+ I T IG N +G L + G F + Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHGGIDPTI-VIGGKLNTLGTNAKLGQ-------GQFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P IAV+T I HL ++ GIE+I + + G L Sbjct: 160 EADESDGSFLK--LSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCL 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 +D + E+L K ++G S AD + ++L+G + V H Sbjct: 218 EDRNIAEILPRVK-----KRFVTYGLSSQADIRA-----------THIRLEGGTTSFVAH 261 Query: 287 GIGYHM---------AQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQ 336 GY M A N+L L +++ ++D + F G G+R++ Sbjct: 262 YKGYRMGEVSFSMPGAHNVLNALACIAV-AMELDVPFSQIQEGFATFGGVGRRFQVKGEV 320 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 T++D+ Y +PA ++A ++ P RR+ V Sbjct: 321 NGITVVDD-YGHHPAEIRATLAAGKSGWPE---RRLVV 354 >gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium pseudotuberculosis 1002] Length = 485 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 78/327 (23%), Positives = 131/327 (40%), Gaps = 52/327 (15%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ L IPV D+LG L +T + I G+ GKT+T M +A+ Sbjct: 88 NPELVAA-RELGIPVIRRSDLLG---------ELMEGSTQVLIAGTHGKTSTTSMAVVAM 137 Query: 131 SS--IKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + ++A G N H G D + E S +R+ + Sbjct: 138 QAAGMDPSFAIGGQLNKAGTNAHQGTG----------DAFVAEADESDASLLRY-----K 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239 P+IAVIT I P HL F E A E+FE L ++ + DD +L K Sbjct: 183 PNIAVITNIEPDHLDFFKSEE----AYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKI 238 Query: 240 H-------ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 H +G T+ + + + A + ++ + + + G+ EVV G H Sbjct: 239 HEKHKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRH 298 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNAN 349 M N L I D+ +S F R + Y + +G F I+ + Y + Sbjct: 299 MVLNAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFE-YHGVVAEGDFAGIELYDDYAHH 357 Query: 350 PASMKAAISVL-SQISPHGEGRRIAVL 375 P + A ++ +++ G+GR + + Sbjct: 358 PTEVSAVLTAARAKLQARGQGRLLVIF 384 >gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 487 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 182 VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++P + V+T I H+ + G E + + L G + DD L + Sbjct: 188 LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVG 247 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMT 299 + + ++G +++AD +L + Q +Q VQ +GK +++ + G H A N Sbjct: 248 ----RPMLTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKPELDITLNIPGKHNALNATAA 303 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKA 355 + + + D D ++AL F EG G+R+ G L+D+ Y +P+ + Sbjct: 304 IAVATEEGVDDDAILRALVEF---EGTGRRFDHLGEFDTGNGKVMLVDD-YGHHPSEVDV 359 Query: 356 AIS 358 I Sbjct: 360 TIK 362 >gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella vaginalis 5-1] gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella vaginalis 5-1] Length = 538 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 17/219 (7%) Query: 49 PHYDGHDFILHAVQKGAGLVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 P D HDF K +V T + S +IP+ +V A + R Sbjct: 67 PDADIHDFSAIDWSKIDAVVTSPVFNPRTPFLQEAASRNIPIMS--EVELAWRLRVPSQR 124 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 A I +TG+ GKT+T EM + L++ +G +IG ++ A + + D Sbjct: 125 TNKPAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAVG----NIGKSVSHAALECEHDAL 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 EL L T + A IT IA HL G+E A K+++F ++K + Sbjct: 181 CVELSSFQL----HFTDSLALDCAAITNIAADHLDWHGGMEAYARDKSKVFNNVQK-ALV 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLR 261 + D+ +L A G K I ++ + K+ + ++ Sbjct: 236 YNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVK 274 >gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris DX-1] gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris DX-1] Length = 468 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 42/327 (12%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA ++VV+T + L IPV ++L L +L + +AI G+ Sbjct: 65 KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115 Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTTT M+ L + I G N G T AR+ D+ + E S + Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGAG-DWMVVEADES---DG 168 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 FL + +A++T + P HL +F + + A E + G + D + L Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288 K + + I ++G++ AD +L S +V + + H Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLTPSGGGSTFKVAFRDRKAGTAHEIADLMLPMP 283 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H A N + + L DT KAL+ F G +R+ T+ID+ Y Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAFG---GVRRRFTKTGEWNGVTIIDD-YGH 339 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375 +P + A + Q + G+ IAV+ Sbjct: 340 HPVEIAAVLKAARQST---AGKVIAVV 363 >gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] Length = 237 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 32/214 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 137 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 138 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 IAV T + HL +E K+ +F L Sbjct: 195 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 227 >gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 491 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M +SSI YA G P V+ G+ + Sbjct: 122 IAIAGTHGKTTTTAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGV 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G +T ++G S +AD ++ ++Q Q + Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VGRQTT-TYGFSDDADVRVEDYQQIGPQGHFTLLR 276 Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 QG + V + G H A N + + + D D ++AL F +G G+R+ Sbjct: 277 QGMPDLRVTLNAPGRHNALNATAAVAVATEEGIDDDAILRALESF---QGTGRRF 328 >gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 467 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+A+TGS GKTTT + I K Y G H+G + A +P+ + ++ + Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVAPEDVAV 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P+IAV+T + P HL + ++E AK I ++ L Y++ Sbjct: 173 VELSSFQLISMHSSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232 Query: 230 S 230 Sbjct: 233 E 233 >gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] Length = 499 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA +V+ D G + +PV Sbjct: 34 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 94 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153 >gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. subtilis str. SMY] gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis] gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. natto BEST195] Length = 432 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 47/295 (15%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S IPV LG K K T +A+TG+ GKT+T +L + + K T Sbjct: 82 SEGIPVIRYHKFLGDYMK---------KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG + + ++ +FE E R FL++ +P A++T I H Sbjct: 133 IGD---------GTGQGNENSEYFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 FS I+++ A E+ L+ I DD K HA + +Y +G + D Sbjct: 177 DYFSSIDDVFDAFQEM--ALQVNKGIIACGDDEHL----PKIHA-NVPVVY-YGTGEEND 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI- 314 FQ R + +E + +V ++ + + G+H N+L +L ++++ ++D++I Sbjct: 229 FQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHH---NVLNSLAVIALCHYEEIDSSII 285 Query: 315 -KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 AL F G KR G LID+ Y +P +K I Q P E Sbjct: 286 KHALKSF----GGVKRRFNEKQLGDQVLIDD-YAHHPTEIKVTIEAARQKYPDRE 335 >gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus sp. WCH70] gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp. WCH70] Length = 451 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 S+A I ITGS GKTTT ++ L +K G +IG +A+ ++ + Sbjct: 110 SEAPFIGITGSNGKTTTTTLIYEMLREGEKRPLLAG----NIGTAACEVAKKAEASNWLV 165 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L IR RP I+V+ I AHL E A AKA IF+ Sbjct: 166 TELSSFQLAGIRDF----RPRISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAV 221 Query: 225 LNYDDSFFELLKAKSHA 241 +N DD L HA Sbjct: 222 INADDELVMQLAENIHA 238 >gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans 91-118] gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans 91-118] Length = 477 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L DT +AL F G G+R+ + G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSSGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 479 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 138/340 (40%), Gaps = 34/340 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+ DSR I F A++G DGH FI A++KGA L++V+ ++ G + + Sbjct: 22 TGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKN 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + LG L + I+ +TG+ GKTTT +L L K A G+ I Sbjct: 82 LRKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKI 138 Query: 148 GVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHIAVI 189 G + A P +D +E G+ + LG + L A+ Sbjct: 139 GKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEF----DGAIF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E+ AK ++F L LN DD + + L+ + H + S Sbjct: 195 TNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGKRLQEEFHGI------S 248 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G +K A Q + + +E+ L GK E +G N+L ++ +V L Sbjct: 249 YG-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGMS 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + + GR + C Q + +ID ++ + Sbjct: 308 EEEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 345 >gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes LO28] Length = 178 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ GA Sbjct: 3 LNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKE 124 ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 63 AIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG 148 ++ + + IG+ IG Sbjct: 118 LVEQIVRENGEQTGLIGTMYRKIG 141 >gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] Length = 476 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 32/322 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ ++++ P + F KG G F+ A+ +GA +V + I IP Sbjct: 10 ITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 69 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L+ + +AA ++IAITG+ GKTT ++ L+++ K A IG+ Sbjct: 70 WVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAVIGTIG 129 Query: 145 NHIGVPLTLARMPVDVDFGIFEL----------GMSH-------LGEIRFLTHLVRPHIA 187 ++ EL G+SH +G + Sbjct: 130 FYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLDHCDIDCG 189 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--- 244 V ++ HL + G+E AK + + +K + LN DD+F ++GI Sbjct: 190 VFLNLSEDHLEDHGGLEAYKRAKKRLADLSKK---LVLNGDDNF-------CRSVGIYDK 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K SFG + D ++ + ++ + +Q V +G + QN + L V Sbjct: 240 KKSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAALMAVW 299 Query: 305 ILTADVDTAIKALSVFHPKEGR 326 L +D I+ + EGR Sbjct: 300 RLGIPIDDIIEHMWSLKLPEGR 321 >gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Vibrio cholerae LMA3894-4] Length = 495 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA +V+ D G + +PV Sbjct: 30 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 89 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 90 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 149 >gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] Length = 494 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 19/221 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82 V + +DSR + F AIKG DG FI A++ GA ++ + G S Sbjct: 27 VERLELDSRKVTQGTTFVAIKGHAVDGRRFINSAIELGANAIIAEACELHPHGKVERSSG 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + +D + L+ LA S +I +TG+ GKTT +++ L I A +G+ Sbjct: 87 VSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGTNGKTTITQIMAQWLDLIGHKAAVMGT 146 Query: 143 YNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAV 188 N L A I + L +S G ++ + + V Sbjct: 147 TGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGAQYTALEVSSHGLVQGRVKTLPFEVGV 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + ++ HL +EE A AK +F+ T +N DD Sbjct: 207 FSNLSRDHLDYHGTMEEYAEAKFSLFD-QHTCKTAVINIDD 246 >gi|134302471|ref|YP_001122441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|158513856|sp|A4IZG9|MURD_FRATW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|134050248|gb|ABO47319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 416 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 53/283 (18%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA IA+TGS GK+T M L + +G +IG P L ++ D+ + Sbjct: 95 TKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVG----NIGTP-ALNKIGEKFDYCVV 149 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ + L + VR + I ++P HL + E+ +K L K F Sbjct: 150 EVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQYKQSKLN----LAKFSNDFF 201 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 YD H GIK Y+ ++Q+ + + K +++V Sbjct: 202 VYD----------VHN-GIK--YA------GEYQIIRGAIYRNST--------KLLDIVE 234 Query: 286 HGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTLI 342 + G H +N+++ L I+ L D++ AI ++ F +G +RC + + T I Sbjct: 235 TKLFGEHNLENIIVVLNILDRLGLDINQAIASIKKF-----KGLEHRCKIVKKVNGTTYI 289 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++S N + AA++ ++ I +LG + + G+ S Sbjct: 290 NDSKGTNVGATIAALNSITN-----SKNIILLLGGVAKGGDFS 327 >gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C] gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C] Length = 464 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 78/334 (23%), Positives = 133/334 (39%), Gaps = 34/334 (10%) Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-- 132 +A L IPV D L + V LR IA+ G+ GKTTT ML +ALS+ Sbjct: 86 LARAAELGIPVVHRSDALAS-----VMDGLRP----IAVAGTHGKTTTTSMLAVALSALG 136 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + +YA G + P + A G ++ ++ E H P +A+I Sbjct: 137 LDPSYAIGGDLD----APGSNAH------HGEGDVFVAEADESDRSFHKYTPQVAIILNA 186 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H +N++ ++EI + + GT+ + + + + + ++G+ Sbjct: 187 ELDHHANYASMDEIYESFETFVGKIVPGGTLVVAHGQEGAAEIAHRVSGNPDLIVRTYGE 246 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + AD ++RK S + V + G+ + G H A N + L L D Sbjct: 247 DETADVRIRKITPRGLTSEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADD 306 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 AL + G +R + +ID SY +P M A + + S G+ R + Sbjct: 307 LAAALGKY---TGVKRRLQLKGEAAGVQVID-SYAHHPTEMTADLEAIR--SAAGDSRIL 360 Query: 373 AV-----LGDMCEMG-ELSQSFHI-DLAEVLSLY 399 V E+G E+ Q+ + D + VL +Y Sbjct: 361 VVFQPHLFSRTQELGKEMGQALALADASVVLDIY 394 >gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 477 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L DT +AL F G G+R+ + G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSSGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|332523014|ref|ZP_08399266.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314278|gb|EGJ27263.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 444 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 51/337 (15%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N + +A + +IP + LG K ++ + G+ GKT+T +L L Sbjct: 76 NNEELAYAIAQNIPFKRYHEFLGEFMKQFIS---------FGVAGAHGKTSTTGLLAHVL 126 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 127 KNITNTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPYY--PEYSIIT 172 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GIE++ SA + + ++K +F+ +D EL K S A IY + Sbjct: 173 NIDFDHPDYFTGIEDVFSAFNDYAKHVQK--ALFVYGEDE--ELKKITSSA----PIYYY 224 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTAD 309 G + DF + + S +V+ + + H G H N + + I D Sbjct: 225 GFEEKNDFIAFDIIRTTNGSDFKVKHDNQVIGQFHVPAYGRHNILNATAVIANLYIAGVD 284 Query: 310 VDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQ------ 362 +D K + F G +R+ +N T+I + + +P + A I Q Sbjct: 285 MDLVAKHMVTF---SGVKRRFTEKVIND---TIIIDDFAHHPTEIVATIDAARQKYPSKE 338 Query: 363 ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 PH R IA+L D + L+++ + LA++ Sbjct: 339 IVAIFQPHTFTRTIALLDDFAQA--LNEADSVYLAQI 373 >gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1] Length = 478 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 35/299 (11%) Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L +++ A L ++A+ G+ GKT+T M+T+AL H G Sbjct: 94 DQGLQVVHRAVALAALTEGRRLVAVAGTHGKTSTTSMVTVAL--------------QHTG 139 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSN 199 + A + D + G H F+ P +AV+T + P HL + Sbjct: 140 ADPSFA---IGGDLSVSGSGAHHGSGDVFVVEADESDGSFTAFAPSVAVVTNVEPDHL-D 195 Query: 200 FSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256 G E A E F E L T+ DD EL+ + GI T+ +G++ Sbjct: 196 HHGDEATYRAVFERFLERLVPGATLVTCADDPGSELVAVHAERAGI-TVRRYGRTATGSQ 254 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 D +L + S + G+ E+ G HMA N L + + D ++ Sbjct: 255 DARLLDFAPDGVGSRTRFRWGGEEHELALGVPGEHMALNALGAFLAGTAVDQDPAALLEG 314 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ F G +R+ + D+ Y +P + A + + +P +GRR VL Sbjct: 315 LAGFG---GVQRRFEFKGRVRGVAVYDD-YAHHPTEVAATLRAAREAAPVVQGRRGRVL 369 >gi|306827968|ref|ZP_07461235.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|304429887|gb|EFM32929.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 442 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 81/325 (24%), Positives = 130/325 (40%), Gaps = 48/325 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N VA IP D LG K ++ A+ G+ GKT+T +L+ L Sbjct: 74 NNKEVAYALRHQIPFKRYHDFLGDFMKSFIS---------FAVAGAHGKTSTTGLLSHVL 124 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +I T IG R + + +FE S E F+ + P ++IT Sbjct: 125 KNITDTSYLIGD---------GTGRGSANAQYFVFE---SDEYERHFMPY--HPEYSIIT 170 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I H F+GI ++ +A + + ++K +F+ +D EL K ++ A IY + Sbjct: 171 NIDFDHPDYFTGIADVRNAFNDYAKQVKK--ALFVYGEDD--ELKKIEAPA----PIYYY 222 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML-MTLGIVSILTAD 309 G K DF + + S +V QG+ + H + + N+L T I ++ A Sbjct: 223 GFEKGNDFIAYDITRTTNGSDFKVIHQGEVIGQFH--VPAYGKHNILNATAVIANLFVAG 280 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362 +D A+ A H K G + R T+I + + +P + A I Q Sbjct: 281 IDMALVAD---HLKTFSGVKRRFTEKIINDTIIIDDFAHHPTEIVATIDAARQKYPSKEI 337 Query: 363 ---ISPHGEGRRIAVLGDM-CEMGE 383 PH R IA+L D C + E Sbjct: 338 VAIFQPHTFTRTIALLEDFACALNE 362 >gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] Length = 499 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI A+ +GA +V+ D G + +PV Sbjct: 34 LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAGVPV 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA +I +TG+ GKTT +++ L + A +G+ N Sbjct: 94 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 153 >gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 244 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 32/214 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 30 ITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDV-----NIEI 84 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT +L LS +G Sbjct: 85 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMG 144 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMS--HLGEIRFLTHLVR 183 + +G P TL R + D+ + E+ H+ ++ Sbjct: 145 NNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKGCNF--- 201 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 IAV T + HL +E K+ +F L Sbjct: 202 -KIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 234 >gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans LB400] gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans LB400] Length = 467 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + +A Q+R + M ++ +++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 V + G H QN L + I + L +AL+ F+ R +RY G Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVFSEGSTNG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces coleocanis DSM 15436] gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces coleocanis DSM 15436] Length = 494 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 10/142 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +AITG+ GKTTT ++ L + YA +G ++G P+ + DV+ EL Sbjct: 124 LAITGTNGKTTTVGLVGSILEAAGAKYAVVG----NVGEPIVTTVLKADVEVLAVELSSF 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L TH + P AV + HL +E AKA I+E + G ++ D + Sbjct: 180 QL----ETTHTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYENTQ-VGCVYDVTDRT 234 Query: 231 FFELLKAKSHALGIKTI-YSFG 251 ++ G + I Y+ G Sbjct: 235 VENMVAGAEVIEGARAIGYTLG 256 >gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586] gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586] Length = 486 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 43/235 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M+T YA G P V+ G+ + + Sbjct: 122 IAIAGTHGKTTTTAMVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD+ L K +G + I ++G S++AD ++ ++Q Q + Sbjct: 221 LPFYGHAVMCLDDAVIRELLPK---VG-RHITTYGFSEDADVRVADYRQVGAQGLFTLAR 276 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 QGK + V + G H A N + + + D + ++AL F +G G+R+ Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALVRF---QGTGRRF 328 >gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5] gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5] Length = 432 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 47/295 (15%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S IPV LG K K T +A+TG+ GKT+T +L + + K T Sbjct: 82 SEGIPVIRYHKFLGDYMK---------KFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFL 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHL 197 IG + + ++ +FE E R FL++ +P A++T I H Sbjct: 133 IGD---------GTGQGNENSEYFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHP 176 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 FS I+++ A E+ L+ I DD K HA + +Y +G + D Sbjct: 177 DYFSSIDDVFDAFQEM--ALQVNKGIIACGDDEHL----PKIHA-NVPVVY-YGTGEEND 228 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI- 314 FQ R + +E + +V ++ + + G+H N+L +L ++++ ++D++I Sbjct: 229 FQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHH---NVLNSLAVIALCHYEEIDSSII 285 Query: 315 -KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 AL F G KR G LID+ Y +P +K I Q P E Sbjct: 286 KHALKSF----GGVKRRFNEKQLGDQVLIDD-YAHHPTEIKVTIEAARQKYPDRE 335 >gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162] Length = 459 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 148/367 (40%), Gaps = 51/367 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R+ T IA+ G+ GKTTT ML+ L G + I V L + ++ G Sbjct: 107 MRNYDTSIAVAGTHGKTTTTSMLSHILLK--------GECDPTISVGGILPAIGGNIRVG 158 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E ++ E FL+ P + +I + HL F I++I + + E L G Sbjct: 159 QSETFLTEACEYTNSFLSFF--PTLGIILNMDADHLDFFKDIDDIRHSFRKFAELLPADG 216 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + +N D +E++ + L K I ++G +A++ S+ ++ E + Sbjct: 217 ALIINADTPKYEMV---AENLPCKVI-TYGLEHDAEY------TASDITYDE--FGHPTF 264 Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V+H+G G H N L ++ +L D + L F G +R++ Sbjct: 265 HVLHNGEDIGICSLKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKDF---GGTDRRFQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMG 382 G T+ID+ Y +P ++A + + PH R A+L + + Sbjct: 322 YKGKVGEVTIIDD-YAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRTKALLPEFAKA- 379 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 L+ + H+ LA++ + ++ +S + K Y T D + F+ + Sbjct: 380 -LTLADHVVLADIYAARETDNLGISSADL--QKQIRELGTPCEYFPTFDEIENFLLENCT 436 Query: 443 DGDVVVV 449 GD+++ Sbjct: 437 QGDLLIT 443 >gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae bacterium 3519-10] gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae bacterium 3519-10] Length = 457 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 + A IIAITGS GKTTT T + I K +IG D+ + Sbjct: 109 TNAKIIAITGSNGKTTT----TSLIYHILKNDGLKVGLGGNIGKSFAKQVADESFDYYVL 164 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 E+ L +I+ RPHI+++ ++ HL ++ EE A AK I E E Sbjct: 165 EVSSFQLDDIQNF----RPHISLLLNLSQDHLDQYNYNYEEYALAKFRIAENQENDNFFI 220 Query: 225 LNYDD 229 N DD Sbjct: 221 YNKDD 225 >gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 481 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 84/369 (22%), Positives = 136/369 (36%), Gaps = 43/369 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDF 162 +R K+TI AI G+ GKTTT M+ L + I G G L D D+ Sbjct: 105 MRLKSTI-AIAGTHGKTTTTSMIAGLLDCGEIDPTVINGGVIEQFGSNARLG----DSDW 159 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E S +R IAV+T I P HL ++ E + A E + G Sbjct: 160 MVVEADESDGSFLRLDGT-----IAVVTNIDPEHLDHYGDFEGVKRAFVEFIHNVPFYGA 214 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 L D + + AK + + ++G S AD K + + +V ++ + E Sbjct: 215 AILCVDHPEVQAVIAKVRD---RRVITYGFSLQADICAVNVKPEAGGNRFDVMVRQRGQE 271 Query: 283 ------VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 V G H QN L + + + + + + F R R + Sbjct: 272 DRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVIREGFARFGGVRRRFTRVGTVPVE 331 Query: 337 GFFTLIDESYNANPASMKAAIS--------------VLSQISPHGEGRRIAVLGDMCEMG 382 G + + Y +P ++A +S V++ + PH R + LG++ MG Sbjct: 332 GGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARVIAVMQPH----RFSRLGEL--MG 385 Query: 383 ELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQS 439 + F+ D V +Y + G AL D + H H D L + Sbjct: 386 DFQACFNEADQVYVAPVYAAGEDPVEGVDAAALVDGIKSLGHRHAQTIADREELVRALAP 445 Query: 440 SLVDGDVVV 448 L GD+V+ Sbjct: 446 QLEPGDLVL 454 >gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] Length = 474 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 11/85 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P V GI+ DSR + P F AI+G P +GHDFI A+ +GA +V D+ Sbjct: 13 PTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVGTQDL-- 70 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVA 101 L +P V D AL LA A Sbjct: 71 ---ELPVPYLKVADPRSALADLAAA 92 >gi|213585604|ref|ZP_03367430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 320 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 25 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 77 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++ EK Sbjct: 78 VLELSSF-QLETTSSL-QAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVY---EKAKVCV 132 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 133 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 183 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + +++KAL+ F G R++ AL Sbjct: 184 MKLS----GQHNYTNALAALALADAVGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 236 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 237 WINDSKATNVGSTEAALNGL 256 >gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 489 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 34/339 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ DSR I F A++G DGH FI A++KGA L++V+ ++ G + + + Sbjct: 33 GMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIGYVLIKNL 92 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 LG L + I+ +TG+ GKTTT +L L K A G+ IG Sbjct: 93 RKHLGILAS-NFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEK--VARFGTIEYKIG 149 Query: 149 VPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHIAVIT 190 + A P +D +E G+ + LG + L A+ T Sbjct: 150 KEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEF----DGAIFT 205 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E+ AK ++F L LN DD + + L+ + H + S+ Sbjct: 206 NLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGKRLQEEFHGI------SY 259 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G +K A Q + + +E+ L GK E +G N+L ++ +V L Sbjct: 260 G-TKQAGVQGKILGFEGGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKELGMSE 318 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + + GR + C Q + +ID ++ + Sbjct: 319 EEIFAKVELLQGAPGRFETVDCG--QDYMVVIDYAHTGD 355 >gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium pseudotuberculosis C231] gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium pseudotuberculosis I19] Length = 485 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 78/327 (23%), Positives = 131/327 (40%), Gaps = 52/327 (15%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ L IPV D+LG L +T + I G+ GKT+T M +A+ Sbjct: 88 NPELVAA-RELGIPVIRRSDLLG---------ELMEGSTQVLIAGTHGKTSTTSMAVVAM 137 Query: 131 SS--IKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + ++A G N H G D + E S +R+ + Sbjct: 138 QAAGMDPSFAIGGQLNKAGTNAHQGTG----------DAFVAEADESDASLLRY-----K 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239 P+IAVIT I P HL F E A E+FE L ++ + DD +L K Sbjct: 183 PNIAVITNIEPDHLDFFKSEE----AYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKI 238 Query: 240 H-------ALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 H +G T+ + + + A + ++ + + + G+ EVV G H Sbjct: 239 HEKHKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRH 298 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNAN 349 M N L I D+ +S F R + Y + +G F I+ + Y + Sbjct: 299 MVLNAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFE-YHGVVAEGDFAGIELYDDYAHH 357 Query: 350 PASMKAAISVL-SQISPHGEGRRIAVL 375 P + A ++ +++ G+GR + + Sbjct: 358 PTEVSAVLTAARAKLQARGQGRLLVIF 384 >gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans SRS30216] gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans SRS30216] Length = 471 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 19/259 (7%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARM 156 A+AA + +A + A+ G+ GKTTT ML +AL++ + +YA G Sbjct: 110 ALAALMAGRAGV-AVAGTHGKTTTSSMLAVALTAAGLDPSYAIGGELTGGDDGGARDGSG 168 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 P + E S G R P + V+T + P HL ++ E A+A E + Sbjct: 169 PF-----VAEADESD-GSFRAYA----PVVDVVTNVEPDHLDHYGTAEAFAAAFEEFVDR 218 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L+ G + DD L + G++ + ++G S AD +LR + + S + V Sbjct: 219 LQPGGLLVACADDPGSAALAGHARGRGVR-VRTYGASATADVRLRDLQPGAAASAVLVD- 276 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G E+ G H N L AD ++ L+ F G +R+ Sbjct: 277 GGVPRELRLAVPGEHNVLNAAAAYCAAVELGADPVAVLEGLARFG---GARRRFELKGEA 333 Query: 337 GFFTLIDESYNANPASMKA 355 ++D+ Y +P ++A Sbjct: 334 AGVRVVDD-YAHHPTEVEA 351 >gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX] gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX] Length = 472 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFEL 167 +A+ G+ GKTTT M+T+ L + + IG L + D D + E Sbjct: 118 VAVAGTHGKTTTTSMITVVLQHLGAMPGYV------IGGQLVTTGLGADAGADDIIVVEA 171 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL ++ P +AVIT + HL N+ +EEI A + + T+ + Sbjct: 172 DES---DGSFL--MLSPRVAVITNVEADHLDNYGDLEEIHDKFAAFIGRVSE--TVVVGV 224 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 DD + + G+K + ++G++ AD+++R Sbjct: 225 DDPGARRVAEVARQRGLK-VLTYGEADTADYRVR 257 >gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium prausnitzii L2-6] Length = 466 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+A+TGS GKTTT + I K Y G H+G + A +P+ + ++ + Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-RVHLGGNIGAALLPMLPEVSPDDVAV 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + ++ P+IAV+T + P HL + ++E AK I ++ L Y++ Sbjct: 173 VELSSFQLISMHQSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQPCRAVLGYEN 232 Query: 230 S 230 Sbjct: 233 E 233 >gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] Length = 489 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 26/321 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + P F A KG DG F A GA ++ D A + +L Sbjct: 21 ITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAAGAIAILCAEDAAAEVRALVPETV 80 Query: 87 GVDDVLGALNKLAVAARLRSK------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V+ A+ V A++ ++ TI+A+TG+ GKT+ + A + Sbjct: 81 A---VVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHFARQIFQAAGHPAASL 137 Query: 141 GSY-------NNHIGV----PLTLARMPVDV-DFGI--FELGMSHLGEIRFLTHLVRPHI 186 G+ ++ G+ P+ L + ++ D G+ L S G ++ VR Sbjct: 138 GTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASSHGLDQYRLDGVRLTA 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + H+ IE +AK +F E L GT+ L+ + + + + A + G+ Sbjct: 198 AAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEKYADRVMAVAQERGLP 257 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +++ G++ + L + + +Q +V IG N L+ G+ Sbjct: 258 -VFTVGETGR-NLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQVSNALIAAGLAIS 315 Query: 306 LTADVDTAIKALSVFHPKEGR 326 D TA++AL GR Sbjct: 316 AGIDTGTALRALENLKGAPGR 336 >gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121] gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121] Length = 478 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 81/390 (20%), Positives = 152/390 (38%), Gaps = 46/390 (11%) Query: 93 GALNKLAVAARLRSKATI------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 G N++ + R A + IA+ G+ GKTTT ++ L++ + Sbjct: 95 GKENRIPIVRRAEMLAELMRYRHGIAVAGTHGKTTTTSLMASVLAATGDAPTFV------ 148 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEE 205 IG LT A + + + + + FL HL +PH A++T I H+ + G E+ Sbjct: 149 IGGRLTSAGTNAQLGSSKYLVAEADESDASFL-HL-QPHSAIVTNIDEDHMDTYGGDFEK 206 Query: 206 IASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + E L G L DD + E+L S + I ++G ADF Sbjct: 207 VKHTFVEFLHNLPFYGMAVLCVDDENVREILPQVS-----RPILTYGIEHEADFYATDLV 261 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV---FH 321 Q + E ++E + + N+L L +++ T D ++A+++ Sbjct: 262 QTGR--YCEFVAHRPNLEPIRIRLPMPGKHNVLNALATIAVAT---DLGVEAVAIQAGLM 316 Query: 322 PKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 EG G+R++ AL + + + Y +P ++ I + P I Sbjct: 317 GFEGVGRRFQEQSPLALPKSGEVMFIDDYGHHPREVEVTIDAIRDGWPDKRLVMIYQPHR 376 Query: 378 MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYS 427 +L + F +D+ +L +Y ++G AL ++ + IHV Sbjct: 377 FSRTRDLYEDFVKVLSKVDVLLLLDVYAAGEAPVNGADSRALCASIRQRGAVDPIHVGKD 436 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 E + + + L DGD+++ + + G Sbjct: 437 EDLSSILANV---LRDGDLMITQGAGDIGL 463 >gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella variicola At-22] gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp. 1_1_55] gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella variicola At-22] gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp. 1_1_55] Length = 438 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A IIAITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A I + H+ + G+++ +AK I+E + T Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ SFG D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGADD-----RCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + +++KAL+ F G R++ L+ Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 315 WINDSKATNVGSTEAALNGL 334 >gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 483 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 26/263 (9%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ A + + T+ IG N G + + DF I E Sbjct: 121 IAIAGTHGKTTTTSLIASIYAQAGLDPTF-IIGGLLNSAGSNAKVGKS----DFLIAEAD 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 S + FL HL +P ++VIT I H+ + G +E++ + L G + Sbjct: 176 ES---DASFL-HL-QPMVSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCI 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 D L + G + + ++G+S +AD+++ + Q + V QG+S+ + Sbjct: 231 DSEVASELIPR---FG-RPVITYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLN 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLI 342 G H A N + + ++AL F EG G+R++ +G L+ Sbjct: 287 MPGKHNALNATAAIAVAKDQNIANFAILEALQKF---EGIGRRFQHYGEFENERGSVMLV 343 Query: 343 DESYNANPASMKAAISVLSQISP 365 D+ Y +P+ + A I+ + P Sbjct: 344 DD-YGHHPSEVAATITAAREGWP 365 >gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 348 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 38/269 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K T +A+TG+ GKT+T +L + + K T IG + + ++ +F Sbjct: 15 KKFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD---------GTGQGNENSEYFVF 65 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ +P A++T I H FS I+++ A E+ L+ I Sbjct: 66 E-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEM--ALQVNKGI 116 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD K HA + +Y +G + DFQ R + +E + +V ++ + Sbjct: 117 IACGDDEHL----PKIHA-NVPVVY-YGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDT 170 Query: 284 VH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFF 339 + G+H N+L +L ++++ ++D++I AL F G KR G Sbjct: 171 FYIPAYGHH---NVLNSLAVIALCHYEEIDSSIIKHALKSF----GGVKRRFNEKQLGDQ 223 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368 LID+ Y +P +K I Q P E Sbjct: 224 VLIDD-YAHHPTEIKVTIEAARQKYPDRE 251 >gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella pneumoniae 342] gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella pneumoniae 342] Length = 438 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A IIAITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A I + H+ + G+++ +AK I+E + T Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ SFG D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGADD-----RCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + +++KAL+ F G R++ L+ Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLDHNGVR 314 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 315 WINDSKATNVGSTEAALNGL 334 >gi|332295509|ref|YP_004437432.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense DSM 14796] gi|332178612|gb|AEE14301.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense DSM 14796] Length = 478 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 52/354 (14%) Query: 57 ILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110 +L QKG + + ++ D+ A + S +IP + + + V +R + + I Sbjct: 46 LLKLKQKGVNIYIGHSPDNISKDVDAVVYSGAIPSDNCELLSARQRNIPVLSRAQMLSKI 105 Query: 111 I------AITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 I A+ G+ GKTTT M++ L+ + ++ G N++ G P + Sbjct: 106 IEQKFSIAVAGTHGKTTTTSMISKMLNDGGLDPSFLIGGELNDY-GANARHGSGP----Y 160 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E S + FL + +P+IAVIT I H S FS ++ + + +G+ + G Sbjct: 161 IVIEADES---DGSFLNY--KPNIAVITNIDFDHPSFFSDLKMVEDYFEKFMQGISEDGK 215 Query: 223 IFLNYD----DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + + D S E + K K Y FG N Q + S+ ++ ++G Sbjct: 216 LVVCGDHAVTRSVAERITDKE-----KIFYGFG--DNNQVQCKNVILSGFGSYYDLYIEG 268 Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + E+ + G H N L + I+ D +A +++ F G R R L Sbjct: 269 EKIGEITLNVPGIHNVLNSLAAFSVAKIIGLDFVSAFDSIASFS-----GVRRRFELKCK 323 Query: 338 FFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEM 381 +ID+ Y +P + A ++ I PH R L + C++ Sbjct: 324 DPYIIDD-YAHHPEEINAVLNTARSIFKDKNLVLIFQPHRFSRTEKFLNNFCDI 376 >gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter oxydans 621H] gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter oxydans 621H] Length = 476 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 SKA IA+TG+ GK+TT ++ ++ + A G+ L L +P D G++ Sbjct: 138 SKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT---ASLALPLLP---DDGVY 191 Query: 166 ELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + MS L L R H A + + P HL + A+AKA +F+ + Sbjct: 192 VIEMSSY----MLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNMGPDDLA 247 Query: 224 FLNYDDSFFELLKAKSHALGIKTI 247 + DD + + ++ + G++ + Sbjct: 248 VIGMDDDWCRAIASQVASRGVQVV 271 >gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 272 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 38/217 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 37 ITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDI-----NIEI 91 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D A+ +A +K +I ITG+ GKTTT ++ LS +G Sbjct: 92 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLIEKILSDYGYHMGLMG 151 Query: 142 SYNNHIGV-----------PLTLAR-----MPVDVDFGIFELGMSHLGEIRFLTHLVRP- 184 + +G P TL R + D+ + E+ L H+ R Sbjct: 152 NNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL-------HMERVK 204 Query: 185 ----HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 IAV T + HL +E K+ +F L Sbjct: 205 GCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 241 >gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis Re117] gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis Re117] Length = 465 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 29/307 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159 A +R I+AI G+ GKTTT + L +I + ++A +G+ +G L Sbjct: 107 ATMRGHEKIVAIAGTHGKTTTTSLTAHMLKTIGTRPSFA-VGANIPSLGTNAELGS---- 161 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 G + + + + FL + RP + ++T + HL ++ + + A + + L + Sbjct: 162 ---GSYFVAEADESDASFLNY--RPDVIIVTNVEADHLDHYGTADAVHQAFVDFAQLLPE 216 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ- 277 G + DD L K A + ++G S +AD +L + Q +E ++ Sbjct: 217 DGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQ-AQATEDGRFTATIEW 275 Query: 278 --GKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 G+S +++ G + + +GI + L +V A+ ALS F G +R+ Sbjct: 276 GSGESRILDLAVPGQHNLLNAAAALAVGIDAGL--EVQEALDALSSF---SGAARRFEFK 330 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G + D+ Y +P ++AA++ ++ G GR V + +Q F+ A Sbjct: 331 GEAGAVRVYDD-YAHHPTEVQAALTAGRTVA--GNGRLHVVF--QPHLFSRTQEFYRQFA 385 Query: 394 EVLSLYN 400 + LSL + Sbjct: 386 QALSLAD 392 >gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4] gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4] Length = 454 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 77/352 (21%), Positives = 138/352 (39%), Gaps = 39/352 (11%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G GKTTT M+ L+ + T +G N +G L + + Sbjct: 109 IAIAGMHGKTTTTSMVASVLAGGGLDPT-VVVGGRVNALGSNARLGN-------SRYLVA 160 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL + P +AV+T + H+ + + ++ +A E + + G D Sbjct: 161 EADESDRSFLK--LSPILAVVTNLDREHMDAYRDMADVETAFVEFMDRVPFYGATTACID 218 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVH-H 286 D + + + + ++G+S +ADFQLR + S+ + EV +G + H Sbjct: 219 DPMLRAILPRVR----RRVMTYGESPDADFQLRMLPKDSDCHAVFEVNTKGLLLGPFRLH 274 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N + I L + L F G +R++ T++D+ Y Sbjct: 275 VPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFR---GVDRRFQVKGVVRGVTVVDD-Y 330 Query: 347 NANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVL 396 +P ++A + VL PH R + M E + +F DL EV+ Sbjct: 331 GHHPTEVRATLQAARECGYGRVLVLFQPHRYSRTAEL------MEEFATAFGDADLVEVV 384 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 +Y + + G AL + + Y+ + + + S DGDV++ Sbjct: 385 DIYAANEEPIVGVTAEALVAQM-QGTRAEYAGSFEEAVGRLVSEARDGDVIL 435 >gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174] gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 51/367 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R+ T IA+ G+ GKTTT ML+ L G + I V L + ++ G Sbjct: 107 MRNYDTSIAVAGTHGKTTTTSMLSHILLK--------GECDPTISVGGILPAIGGNIRVG 158 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E ++ E FL+ P I +I I HL F I++I + E L G Sbjct: 159 QSETFLTEACEYTNSFLSFF--PTIGIILNIDADHLDFFKDIDDIRHSFRTFAELLPAEG 216 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + +N D +E++ + L K I ++G +A++ ++ ++ E L + Sbjct: 217 ALIINADTPKYEMI---TENLPCKVI-TYGLEHDAEY------TATDITYDE--LGHATF 264 Query: 282 EVVHHG----------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V+H+G G H N L ++ +L + L F G +R++ Sbjct: 265 HVLHNGEDLGTCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFDGLKDFG---GTDRRFQ 321 Query: 332 CALNQGFFTLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMG 382 G T+ID+ Y +P ++A + + PH R A+L + + Sbjct: 322 YKGKIGDVTIIDD-YAHHPTEIEATLHAAKNYPHKKIWCVFQPHTYTRTKALLPEFAKA- 379 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 L+ + H+ LA++ + ++ +S ++ + + Y T D + F+ + Sbjct: 380 -LTLADHVVLADIYAARETDNLGISSRNL--QEKIVELGTPCEYFPTFDEIENFLLENCT 436 Query: 443 DGDVVVV 449 GD+++ Sbjct: 437 QGDLLIT 443 >gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus influenzae F3047] gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus aegyptius ATCC 11116] gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus influenzae F3047] gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus aegyptius ATCC 11116] Length = 437 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 87/401 (21%), Positives = 157/401 (39%), Gaps = 74/401 (18%) Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124 ++ +DM+ L++ + VL A + + + R +K I+ ITGS GK+T Sbjct: 63 LLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + T+ K +G N IG+P L+ + D + + EL L T+ ++ Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A I + H+ + +E+ AK I+ K G LN +D Sbjct: 173 AAATILNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQ 294 +FG+++N + + S W++ + GK +V + G H Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L + + ++D+ AL F +G R++ I++S N S Sbjct: 272 NILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLVHQANGIRWINDSKATNVGSTV 328 Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AA++ L + EG+ +LG D E+ EL HI + + L+ Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI----ICYCFGRDGALLAK 379 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 F S + ETM+ F++ +L GD+V++ Sbjct: 380 F-----------SSQSYLFETMEQAIAFLRPTLQSGDMVLL 409 >gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 31/279 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDV 160 +R+ +IAI G+ GKTTT M+ L K Y +G++ +G + Sbjct: 98 MRNFKNVIAIAGTHGKTTTTSMIGYILK--KANYNPTILVGAFVKQLGGNFVIGSK---- 151 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D+ + E ++F +P I VI I HL F I+ I + + + + Sbjct: 152 DYLVVEACEYVDSFLKF-----KPTIGVILNIDNDHLDYFKDIDSIKESFRKFAMKIPSS 206 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G I N DD + + +K H + + AD + E ++ K+ Sbjct: 207 GFIVANCDDKNVKDVISKLHT----QVVCISTKEKADIFADNISY--NDGYYEFDVKNKN 260 Query: 281 MEVVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 E++ H G+H N L + S L + T + LS F G +R Sbjct: 261 NEILAHIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEFC---GASRRLEKVGEF 317 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L D+ Y +P +KA ++ L +IS EG+ +A+ Sbjct: 318 NGIYLYDD-YAHHPTEIKATLATLKKIS---EGKVLAIF 352 >gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Caldicellulosiruptor owensensis OL] gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor owensensis OL] Length = 455 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ L I++ +P + I I P HL+ +E AK IFE +++TG Sbjct: 163 VLEISSFQLETIKYF----KPMVGCILNITPDHLNRHMTMENYIKAKMRIFENIDETGYT 218 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSM 281 LNYD+S L L + F K+KN ++K E++ + +GK+ Sbjct: 219 VLNYDNSVTRDL----IGLAKGNVIVFSKNKN------QFKNVVFIEENKIYFTFEGKTQ 268 Query: 282 EVVHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 EV+ G H +N L + DT L F E R Sbjct: 269 EVMRKDEIFIPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHR 317 >gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN] gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae Br4923] gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae] gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923] Length = 495 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 113/302 (37%), Gaps = 43/302 (14%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNH 146 L + AV ARL T + + G+ GKTTT ML +AL + A +G+ N H Sbjct: 102 LLRSAVLARLMDGCTTLMVAGTHGKTTTTSMLVVALQHCGCDPSFVVGGELAVVGT-NAH 160 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 G+ + D + E P++AV+T I HL + ++ Sbjct: 161 HGLGACFVAEADESDGSLLEY---------------TPNVAVVTNIDSDHLDFYGSVDAY 205 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF---QLRKW 263 E G + + DD L ++ LGI+ + + + +L W Sbjct: 206 IRVFDSFVERFALGGALVVCNDDPGAAALARRTAELGIRVLRYGSDDRIGETLAARLLSW 265 Query: 264 KQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 +Q + +QL G+ V G HMA N L L + A D + L+ F Sbjct: 266 EQQGTGAVAHIQLAGQPNSRVMRLPVPGRHMALNALGALLAAIEIGASTDEVLDGLAGF- 324 Query: 322 PKEGRGKRYR------CALNQGFFTLID--ESYNANPASMKAAISVLS-QISPHGEGRRI 372 RG R R + Q +L+ + Y +P + A ++ + G GR I Sbjct: 325 ----RGVRRRFELVGTSGVGQASNSLVRVFDDYAHHPTEISATLAAFRIMLEQSGGGRCI 380 Query: 373 AV 374 V Sbjct: 381 VV 382 >gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 445 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++++ A+R ++A IIA+TGS GKTTT +L L + G+ N + A Sbjct: 89 ISEIEFASRY-TQAKIIAVTGSNGKTTTTSLLYHLLEQAGLSIGVGGNIGN------SFA 141 Query: 155 RMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKA 211 RM ++ + E+ L +I RPHIA++ I P HL ++ + AK Sbjct: 142 RMVAQEPKEYYVLEISSFQLDDISSF----RPHIALLLNITPDHLDRYNYQFQNYIDAKF 197 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKS 253 I E + + + DD + AK + + I +S KS Sbjct: 198 RITEFQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLEKS 240 >gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella microti CCM 4915] gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella microti CCM 4915] Length = 467 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + +++ + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQVIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] Length = 486 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I DSR I + F AI+G +GH+FI A+ GA +V +T + ++ S I Sbjct: 23 VHNIHFDSRKIQSNDVFVAIRGSVSNGHEFIDKAIALGAKAIVCDT-LPTNLLS-QITYV 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEML 126 V D AL LA K ++ +TG+ GKTT +L Sbjct: 81 KVKDTNAALAYLATNFYDNPSQKLQLVGVTGTNGKTTIASLL 122 >gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella pneumophila str. Paris] gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella pneumophila str. Paris] Length = 447 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 51/436 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88 + D+R AP A F + P D ++ Q ++ TD++ S G +L PV Sbjct: 30 VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84 Query: 89 DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 GA + AR S A +IAITG+ GK+T +T + + K + + Sbjct: 85 ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG P L + D + EL L LT+ + P +A I + P HL +E Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AK I+ G + + N +D + + +S IK I SFGK + + W Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQTDIKCI-SFGKDAPS---MGNWGL 246 Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +++ ME L +S+ + G H N L + + + L Sbjct: 247 IEQENTTYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F R + R G+ I++S N + A IS ++ I +G+ + + G Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + + + LA+ +S + + + L G ++ AL + + V + +++G ++ Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410 Query: 440 SLVDGDVVVVKSSNSC 455 GDVV++ S +C Sbjct: 411 CAKPGDVVLL--SPAC 424 >gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Length = 448 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 SKA IA+TG+ GK+TT ++ ++ + A G+ L L +P D G++ Sbjct: 110 SKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT---ASLALPLLP---DDGVY 163 Query: 166 ELGMSHLGEIRFLTHLVRPHI--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + MS L L R H A + + P HL + A+AKA +F+ + Sbjct: 164 VIEMSSY----MLERLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDNMGPDDLA 219 Query: 224 FLNYDDSFFELLKAKSHALGIKTI 247 + DD + + ++ + G++ + Sbjct: 220 VIGMDDDWCRAIASQVASRGVQVV 243 >gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella pneumophila 130b] Length = 447 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 101/433 (23%), Positives = 176/433 (40%), Gaps = 51/433 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91 D+R AP A F + P D ++ Q ++ TD++ S G +L PV Sbjct: 33 DTRKEAPGVAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLERARQ 87 Query: 92 LGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 GA + AR S A +IAITG+ GK+T +T + + K + +IG Sbjct: 88 AGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGNIGT 142 Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P L + D + EL L LT+ + P +A I + P HL +E Sbjct: 143 PVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQ 198 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK I+ G + + N +D + + +S IK I SFGK + + W + Sbjct: 199 AKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGLIEQ 249 Query: 269 QSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 ++ ME L +S+ + G H N L + + + L F Sbjct: 250 ENTIYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKTFPG 305 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + R G+ I++S N + A IS ++ I +G+ + + G + Sbjct: 306 LPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQGKGA 359 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + + LA+ +S + + + L G ++ AL + + V + +++G ++ Sbjct: 360 DFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAK 413 Query: 443 DGDVVVVKSSNSC 455 GDVV++ S +C Sbjct: 414 PGDVVLL--SPAC 424 >gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 86/358 (24%), Positives = 147/358 (41%), Gaps = 55/358 (15%) Query: 96 NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143 N++ V R +R K+T+ A+ G+ GKTTT M+ L + I T I SY Sbjct: 90 NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 ++ AR+ D D+ + E S +R L A++T I P HL ++ Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E++ A E + G FL D + + + + + + ++G S AD + Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316 S + ++G+ ++ I G H QN L +G V++ + D AI+ Sbjct: 253 TPISGGNRFTAVIRGRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311 Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366 + F + R R + G +ID+ Y +P +KA +S V++ + PH Sbjct: 312 FARFGGVKRRFSRVGEIKICDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370 Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R L D+ M E +F+ D+ V +Y ++G AL L + H Sbjct: 371 ----RFLRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422 >gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD [Candidatus Protochlamydia amoebophila UWE25] gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD [Candidatus Protochlamydia amoebophila UWE25] Length = 444 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 9/118 (7%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFEL 167 +II +TG+ GKTT ++T L++ +G+ +G PLT + +D + + EL Sbjct: 112 SIIGVTGTNGKTTVTLLITHILNANGLKAKALGN----VGTPLTREILTLDFQEIAVLEL 167 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L F ++ AV+ I P HL + +E A +K +I + L+K+G +F+ Sbjct: 168 SSYQLD--TFQQQVLDE--AVVLNITPDHLERYETMENYAKSKFQIGKCLKKSGKLFV 221 >gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina NK-01] gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina NK-01] Length = 480 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 26/258 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT +L A + T+ IG N G L F + Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRFLIA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P ++V+T I H+S + G ++ E L G L Sbjct: 173 EADESDASFL-HL-QPMVSVVTNIDADHMSTYGGDFNKLKKTFIEFLHNLPFYGLAVLCV 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD L + +G T+ ++G S++AD + +Q +++ V + + ++V + Sbjct: 231 DDPVVRELLPQ---VGRPTV-TYGFSEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSVN 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T I + D + LS F +G G+R++ ++ G L+ Sbjct: 287 MPGNHNVLNALATTAIATDEGIDDAAIVSGLSGF---QGVGRRFQVYGELPVDGGSVMLV 343 Query: 343 DESYNANPASMKAAISVL 360 D+ Y +P + A I + Sbjct: 344 DD-YGHHPREVAAVIKAV 360 >gi|255098863|gb|ACU00771.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium massiliense] Length = 188 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP++ ++T I HL +F E ++ E E L G + + DD L ++H Sbjct: 8 RPNLIIVTNIEADHLDHFGSAEAYSAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHER 67 Query: 243 GIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKS 280 GI+ + +G + A+ QLR W+ + ++QL G+S Sbjct: 68 GIR-VRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGES 111 >gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus sakei subsp. sakei 23K] gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus sakei subsp. sakei 23K] Length = 454 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A +++TGS GKTTT ++ + L+ + + N IG+PL+ +A+ D + Sbjct: 110 SEADWVSVTGSNGKTTTTTLIALMLNYQRAQGHAYAAGN--IGIPLSEVAQKATAKDTMV 167 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L T V+P +AV+T I AHL E AK I + + Sbjct: 168 TELSSFQL----MGTTTVKPKVAVLTNIYEAHLDYHGTRENYVQAKMRIVQNQTASDYFV 223 Query: 225 LNYDDSFFELLKAKSHA 241 +N+D L ++ A Sbjct: 224 VNWDLPELRTLSQQTKA 240 >gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21] gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21] Length = 454 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 41/333 (12%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129 + D+VA L ++ ++LG ++ IA+ G+ GKTTT M+ I Sbjct: 88 DLDLVAFFQRLGYRLYKRSEILG---------KISESHFTIAVAGTHGKTTTSSMIAHIL 138 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 SS + A +G + L LA D D + E + + FLT + P+IAV+ Sbjct: 139 TSSGRPCSAFLGGIAANYNTNLLLA----DSDLFVVE---ADEFDRSFLT--LHPNIAVV 189 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T P HL + E + + + K G + L + T Sbjct: 190 TATDPDHLDIYGDSEHMLESFRLFVNQVAKDGKRIIK-------------EGLHLPTDIR 236 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTA 308 + K AD + ++ + + KS+ + GI G H +N + + + +L Sbjct: 237 YAVEKRADVYATNIQIRNKCFYFDYLGYNKSIFDIKLGIAGKHNIENAVAAITVAKLLGV 296 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D + +L+ F +G +R+ +N+ +D+ Y +P ++A +S + ++ +G+ Sbjct: 297 DDEAISGSLASF---KGVKRRFEYIVNREDQVYVDD-YAHHPEELRACLSAMKEL--YGD 350 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 V + ++ F + AEVL L ++ Sbjct: 351 KEITCVF--QPHLFTRTRDFVDEFAEVLGLADV 381 >gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT 12066] gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT 12066] Length = 479 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 42/334 (12%) Query: 56 FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 FI H + +GA +VVV N ++ A+I IPV ++LG L + Sbjct: 69 FIGHRAENIEGASVVVVSSAIHQGNPEVNAAI-EKRIPVVRRAEMLGELMRYRYG----- 122 Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 IA+ G+ GKTTT +++ A + + T+ IG N G T AR+ Sbjct: 123 ----IAVAGTHGKTTTTSLISSIFAEAGLDPTF-VIGGLLNSAG---TNARL----GSSR 170 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223 + + + + FL HL +P + V+T I HL + G ++ E L G Sbjct: 171 YLIAEADESDASFL-HL-QPMMTVVTNIEADHLETYGGDFSKLEDTFIEFLHNLPFYGVA 228 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-ME 282 + DD L + +G + + ++G + +D Q+ ++Q S V + S ++ Sbjct: 229 VVCNDDPVIRKLMPR---IG-RAVVTYGTIEGSDLQVVDYEQKEAGSTFTVLRKNASPLK 284 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341 + + G HMA+N + + D D+ +AL F R +RY + QG +L Sbjct: 285 IELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFAGVGRRFQRYGKLMSPQGIVSL 344 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +D+ Y +P+ ++A I + + P+ RR+ ++ Sbjct: 345 VDD-YGHHPSEVQATIDAVRRGWPN---RRLVMV 374 >gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 451 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 IAITG+ GKTTT +L L + K + I +G + A + V+ G +L + Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL + P + +IT I H++ ++ + F E +I+L DD Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L AK + K + S+G S NAD Q+ + E + +++ +G + G Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275 Query: 290 YHMAQN 295 + QN Sbjct: 276 RYNVQN 281 >gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] Length = 496 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 28/252 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLSIPV 85 + DSR ++ + F A+ G +G D++ +KG VV T ++AS S + + Sbjct: 27 VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPTYVAKGLIAS-NSTDLNI 85 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY-- 143 G DDV L+ + + +I +TG+ GK++ + ++ + A IG++ Sbjct: 86 IGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGV 145 Query: 144 ---NNH----------IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 NN + + TLA+ D VD FE L + R + AV Sbjct: 146 GKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAG--IEIDTAVF 203 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E A+AK ++F +F + D + + S G K+ Y Sbjct: 204 TNLTQDHLDYHGTMESYATAKRKLFRLDTLKHAVFCSKSD-YCNFMAEDSK--GDKSYY- 259 Query: 250 FGKSKNADFQLR 261 G+ + DF +R Sbjct: 260 -GERPSDDFVIR 270 >gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] Length = 501 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LLK + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|92113241|ref|YP_573169.1| cyanophycin synthetase [Chromohalobacter salexigens DSM 3043] gi|91796331|gb|ABE58470.1| Cyanophycin synthetase [Chromohalobacter salexigens DSM 3043] Length = 879 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 20/152 (13%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSY--NNHI---------GVPLTL 153 + I+A+TG+ GKTTT +++ L ++ AC G+ +NH+ + Sbjct: 481 RIPIVAVTGTNGKTTTVRLISHLLRQAGRSVGMACTGAIEIDNHVILRGDYSGPQAASIV 540 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKA 211 R P V++ + E+ G +R H+ V+ IA HL S+ ++E+A K+ Sbjct: 541 LREPT-VEYAVLEVARG--GIMRRGLGFDECHVGVLLNIASDHLGESDIHTLDELARCKS 597 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + + + K+GT LN DD +L ++ A G Sbjct: 598 VVIDAVGKSGTAVLNADDP--RVLASREWARG 627 >gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino pimelate ligase [Desulfotalea psychrophila LSv54] gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Desulfotalea psychrophila LSv54] Length = 478 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 92/383 (24%), Positives = 154/383 (40%), Gaps = 43/383 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIG-----SYNNHIGVPLTLARM 156 +RS+++++ ITG+ GKTTT +L L + + T+ G + N +G Sbjct: 114 IRSRSSLV-ITGTHGKTTTCSLLASVLYHAKLDPTFMIGGIVREFNSNFRLGKGKYFVAE 172 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + D F+ E +FL + RP IAVIT++ H F+ +E+I A A+ + Sbjct: 173 GDEYDTAFFD------KESKFLHY--RPQIAVITSLEFDHADIFADLEQIKRAFAKFIQL 224 Query: 217 LEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L G + N D+ EL +A + +G + + + L K S + EV Sbjct: 225 LPPDGLLIANLDNPDIAELAQAAPCP-----VEGYGLNSSFPWSLGKISSQSGYTHFEVL 279 Query: 276 LQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G + + G H N L I+ L D T + L F G +R Sbjct: 280 KDGTLWDSFTVALPGQHNCLNSLAVCAIMHHLGLDTKTINQGLVAF---GGVKRRQEIRG 336 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQS 387 + T+ID+ + +P +++ ++ L P + R + V + S+S Sbjct: 337 IENNITVIDD-FAHHPTAVRETLAALKAAYP--QNRLVTVFEPRTNSSRRTIFQKQYSES 393 Query: 388 FH----IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 F + L E + L + L L D R + D + L ++S L Sbjct: 394 FDSSNIVLLREPVPLVDYPADQLFSSKQLTC-DLKKRGLKAASFANTDQILLHLKSLLQP 452 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GDVV + S+ GF + LLE Sbjct: 453 GDVVAILSNG--GFDNIHVRLLE 473 >gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 447 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 51/436 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88 + D+R AP A F + P D ++ Q ++ TD++ S G +L PV Sbjct: 30 VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84 Query: 89 DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 GA + AR S A +IAITG+ GK+T +T + + K + + Sbjct: 85 ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG P L + D + EL L LT+ + P +A I + P HL +E Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AK I+ G + + N +D + + +S IK I SFGK + + W Sbjct: 196 YTQAKQRIYRGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGKDAPS---MGNWGL 246 Query: 266 CSEQSW------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +++ ME L +S+ + G H N L + + + L Sbjct: 247 IEQENTTYLAKGMERLLPVESILIK----GVHNWMNALAACALAEAAGISMQHILNVLKT 302 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 F R + R G+ I++S N + A IS ++ I +G+ + + G Sbjct: 303 FPGLPHRCQWVREVDGVGW---INDSKGTN---IGATISAINGIGGSMQGKIVLIAGGQG 356 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + + + LA+ +S + + + L G ++ AL + + V + +++G ++ Sbjct: 357 KGADFQE-----LAQPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKT 410 Query: 440 SLVDGDVVVVKSSNSC 455 GDVV++ S +C Sbjct: 411 CAKPGDVVLL--SPAC 424 >gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] Length = 509 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 48 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMAEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LLK + I Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 272 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 273 PTI-TYGRSEESNYQV 287 >gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC 19624] gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC 19624] Length = 477 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 33/274 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + + T+ IG N G L + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGANARLGQ-------GEFIVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L P ++V+T I H+ + + A + + GT L Sbjct: 160 EADESDASFLNLL--PVLSVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCT 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283 DD + + I S+G NA + + Q Q + +EV Sbjct: 218 DDPAVREVADTVNC----PITSYGFGDNAQVRAVNVRAVGGQMHFTAQRRNGVVLPDLEV 273 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGF 338 V + G H N L + + + L +KAL+ F +G G+R++ A G Sbjct: 274 VLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEF---KGVGRRFQRYGEIPAKGGGT 330 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 FTLID+ Y +P M A +S P G+R+ Sbjct: 331 FTLIDD-YGHHPVEMAATLSAARGAFP---GQRL 360 >gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 432 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 38/269 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K T +A+TG+ GKT+T +L + + K T IG + + ++ +F Sbjct: 99 KKFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD---------GTGQGNENSEYFVF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ +P A++T I H FS I+++ A E+ L+ I Sbjct: 150 E-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFSSIDDVFDAFQEM--ALQVNKGI 200 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 DD K HA + +Y +G + DFQ R + +E + +V ++ + Sbjct: 201 IACGDDEHL----PKIHA-NVPVVY-YGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDT 254 Query: 284 VH-HGIGYHMAQNMLMTLGIVSIL-TADVDTAI--KALSVFHPKEGRGKRYRCALNQGFF 339 + G+H N+L +L ++++ ++D++I AL F G KR G Sbjct: 255 FYIPAYGHH---NVLNSLAVIALCHYEEIDSSIIKHALKSF----GGVKRRFNEKQLGDQ 307 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGE 368 LID+ Y +P +K I Q P E Sbjct: 308 VLIDD-YAHHPTEIKVTIEAARQKYPDRE 335 >gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 477 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L DT +AL F G G+R+ G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTGTGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 477 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L DT +AL F G G+R+ G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTGTGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|296121825|ref|YP_003629603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces limnophilus DSM 3776] gi|296014165|gb|ADG67404.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces limnophilus DSM 3776] Length = 498 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%) Query: 105 RSKATIIAITGSVGKTTTKEML----TIALSSIKKTYACIGSYNNHIGVPLTLARMP--V 158 R A + A+TGS GK+TT ML +A S A +G +IGV L L ++P Sbjct: 126 RCPAPVAAVTGSNGKSTTTAMLHRICEMASGSPGLRRAWLG---GNIGVSL-LDQLPAIT 181 Query: 159 DVDFGIFELG---MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 D + EL + L +I + P IA++T + HL G+++ SAK +F Sbjct: 182 SDDLVVMELSSFQLYWLNQIEW-----SPSIAIVTNFSANHLDWHDGLDDYRSAKQTMFR 236 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++ +N DD + LG +T Sbjct: 237 WQNESDVAVINLDDPDVCQWPGPALRLGFQT 267 >gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M] gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M] Length = 467 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 149/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + +A Q+R + M ++ +++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGLAPDA--QVRAVNVEARDGKMHFTAMREDAAPLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 V + G H QN L + I + L +AL+ F+ R +RY +G Sbjct: 271 VLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGEPRG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens KN400] Length = 509 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 +NG+ DSR + FFA+KG DGHDFI A ++GA VV+ + A G Sbjct: 23 INGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCG 75 >gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] Length = 541 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 22/232 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLS--- 82 V GIS+DSR+I P + + A+ G G F AV GA ++ TD A I S Sbjct: 42 VTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAIL--TDRAGAQIASAEVPQ 99 Query: 83 -IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +PV GV + LA R + +TG+ GKTTT ++ L++++++ IG Sbjct: 100 HVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSGLIG 159 Query: 142 SYNNHIG---VPLTLAR-MPVDVDFGIFELGMSHLGEI--RFLTHLVRP--------HIA 187 + G +P TL DV + + +LG + +H + +A Sbjct: 160 TIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVFDVA 219 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 T + HL + E A+ KAE+F ++ + DD + + A++ Sbjct: 220 GFTNLTQDHLDLHGTMAEYAATKAELFSS-RRSKRAVVTVDDQWGRQIAARA 270 >gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074] gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074] gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074] Length = 467 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 23/205 (11%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYA 138 L IPV D L AL IA+ G+ GKTTT +L ++L+++ + +YA Sbjct: 92 LGIPVVHRSDALAALMD---------GTRPIAVAGTHGKTTTTSILAVSLAALGRDPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + P + A G E+ ++ E H P +A++ + H + Sbjct: 143 IGGDLD----APGSNAL------HGTGEIFVAEADESDRSFHKYTPEVAIVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNA 256 N++ IEEI + + GT+ ++ D L + A G+ T+ ++G++ +A Sbjct: 193 NYASIEEIHESFETFAARIVPGGTLVISADHEGARELTRRLAAKGLPGVTVRTYGEAADA 252 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM 281 D ++ +S + V++ G + Sbjct: 253 DVRVVSIVPQGLRSEVTVRIDGAEL 277 >gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353] gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353] Length = 466 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 83/372 (22%), Positives = 140/372 (37%), Gaps = 69/372 (18%) Query: 108 ATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A IA+ G+ GKTTT MLT I L + +G + IG G Sbjct: 117 AKSIAVAGTHGKTTTTSMLTHILLQADTDPTVSVGGMLDRIG--------------GNIR 162 Query: 167 LGMSHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 +G S L FLT P ++I + H+ F IE+I ++ + Sbjct: 163 VGHSDL----FLTEACEYTNSFLEFYPLYSIILNVEEDHMDFFKDIEDIKNSFHKFASQT 218 Query: 218 EKTGTIFLNYD----DSFFELLKAKSHALGIK-------TIYSFGKSKNADFQLRKWKQC 266 G I +N D D L K G+ +F K NA + L Q Sbjct: 219 ADDGLIIINGDMGHTDFILNGLSQKHVTFGLNPDNDYTAADITFDKEGNASYNLIAHGQ- 277 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E+ + ++++G+ H N L + + +D K L F G Sbjct: 278 -EKGRITLKVKGR-----------HNVMNSLAAIACTEAIGLPLDAIRKGLLSF---GGT 322 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGD 377 +R+ + G T+ID+ Y +P ++A +S PH R A L + Sbjct: 323 HRRFEYKGSLGDVTVIDD-YAHHPTEIRATLSAAKDYPHDELWVIFQPHTYTRTKAFLPE 381 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 + L Q+ HI LA++ + + +S V+ L + VHY + + + F+ Sbjct: 382 FAKA--LEQADHIVLADIYAAREVDTGEVSSKDVMKLLQEDGQD--VHYFPSFEEIKDFV 437 Query: 438 QSSLVDGDVVVV 449 ++ + D+++ Sbjct: 438 KAHVKGHDLLIT 449 >gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2] Length = 466 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 18/308 (5%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L++ A L + +A+ G+ GKTTT M T+AL AC + IG L+ Sbjct: 99 LHRSGALASLMAGKRAVAVAGTHGKTTTTSMTTVALQ------ACGLDPSFVIGGVLSTT 152 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + G + + + FL L P I ++T + HL + E++ A E Sbjct: 153 GTNAHLGTGDVFVAEADESDGSFL--LYEPTIGILTNVEADHLDYYGTPEKVREAFVEFC 210 Query: 215 EGL-EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-M 272 G+ GT+ DD + ++ A G I +G S++AD +LR+ + + + Sbjct: 211 AGIGADGGTVIACADDPGSLDVAQQARAQGTSVIL-YGTSESADVRLRELQSGLVSEFVL 269 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 +V Q + + V G H A N + + L ADV A L + G +R+ Sbjct: 270 DVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGADVAKAASGLGGYG---GTRRRFEE 326 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +ID+ Y +P ++A +S + EGR A+ + + F + Sbjct: 327 RGIAAGVRVIDD-YAHHPTELRAVLSAARGVVTD-EGRVWAIF--QPHLYSRTMEFRTEF 382 Query: 393 AEVLSLYN 400 E L L + Sbjct: 383 GEALGLAD 390 >gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 483 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 124/307 (40%), Gaps = 40/307 (13%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 SIPV D+L A L +T + + G+ GKT+T M +AL + + + + Sbjct: 94 SIPVIRRSDLL---------AELMEGSTQLLLAGTHGKTSTTSMAVVALQAAGEDPSFV- 143 Query: 142 SYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 IG L LA G + E S +R+ +P +AVIT I P HL Sbjct: 144 -----IGGQLNLAGTNAHQGAGEVFVAEADESDASLLRY-----KPDVAVITNIEPDHLD 193 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----SK 254 F E+ + + G + + DD+ ++ A G+ ++ +G S+ Sbjct: 194 YFGTAEKYFEVFDSFADRIPPGGHLVVCLDDAEAAACGQRARARGVN-VFGYGTAAAASR 252 Query: 255 NADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGI---GYHMAQNMLMTLGIVSILTADV 310 D S+ ++ EV+L G V + + G HM N L +++ AD Sbjct: 253 YPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAAGALVACTLVGADP 312 Query: 311 DTAIKALSVFHPKEGRGKRY--RCALNQGFFTLID--ESYNANPASMKAAISVLSQ-ISP 365 + L+ F G +R+ + L G F + + Y +P + A ++ + + Sbjct: 313 GKLAEGLTGF---TGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAVLTAARETVRA 369 Query: 366 HGEGRRI 372 G+G ++ Sbjct: 370 AGQGGKV 376 >gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica CNB-440] gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinispora tropica CNB-440] Length = 514 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 32/226 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ S+ + P + + A+ G G +F+ A + GA V+ + D A+ + +P+ Sbjct: 42 VTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLTDPDGAAATAEVDLPML 101 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L LA V + T+I +TG+ GKT+T ++ L + T IG+ Sbjct: 102 VVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVESGLRAAGHTTGLIGTVE 161 Query: 145 NHIG---------VP--------LTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +G P L AR V ++ L M +G +RF Sbjct: 162 TRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVRFT----- 216 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + T HL + + +AKA++F+G + LN+DD Sbjct: 217 --VGGYTNFGSDHLDFHADSVDYFAAKAKLFDG--RCEVEVLNHDD 258 >gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans 2-40] gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans 2-40] Length = 474 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 93/436 (21%), Positives = 175/436 (40%), Gaps = 79/436 (18%) Query: 59 HAVQKGAGLVVVNTDMVAS-------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 HA VVVN+ V S IP+ ++LG L R R I Sbjct: 68 HATNVDGASVVVNSSAVESGNPELMEAREKRIPIVRRAEMLGEL------MRYRHG---I 118 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 A+ G+ GKTTT +++ L++ KK IG N G + Sbjct: 119 AVAGTHGKTTTTSLISSILAAGKKDPTFIIGGLLNSAG-------------------SNA 159 Query: 171 HLGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 LGE R+L HL +P ++V+T I H+ + G ++ + L Sbjct: 160 GLGESRYLVAEADESDASFLHL-QPMVSVVTNIDADHMDTYEGDFSKLKQTFIDFLHNLP 218 Query: 219 KTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QL 276 G + DD EL+ A S +++ ++G ++++D++ +Q + +V + Sbjct: 219 FYGLAVVCGDDPIVTELIPAIS-----RSVVTYGFNEDSDYRAFDVRQDGSKLRFKVARP 273 Query: 277 QG-KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332 +G ++E+ + G H N + + S D D L+ F G G+R+ Sbjct: 274 EGLATLELFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFM---GVGRRFEIYGE 330 Query: 333 -ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + G ++ + Y +P + A I+ + P RR+ ++ ++ + D Sbjct: 331 FEVGAGPTAMLVDDYGHHPREVAATIAAVRDGWPD---RRLVMVYQPHRYSR-TRDLYED 386 Query: 392 LAEVLSLYN---ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSS 440 EVLS + + V+ +G + D+ L R+I + E ++G+ I+ Sbjct: 387 FVEVLSTVDQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGVEGVPAVIKDI 446 Query: 441 LVDGDVVVVKSSNSCG 456 + GD+++ + + + G Sbjct: 447 VQPGDIIITQGAGNVG 462 >gi|229586685|ref|YP_002845186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia africae ESF-5] gi|228021735|gb|ACP53443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia africae ESF-5] Length = 500 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S SIP+ D+L A +K IAITG+ GK+TT +++ L+S Y Sbjct: 85 SFSIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IGV A+ D + EL L ++ T IAV+ I P HL Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AK++IF+ +++ +N D+ + Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217 >gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] Length = 509 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 +NG+ DSR + FFA+KG DGHDFI A ++GA VV+ + A G Sbjct: 23 INGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCG 75 >gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus parainfluenzae T3T1] Length = 437 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 45/349 (12%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 II ITGS GK+T +T + + K +IG+P L+ + D D + EL Sbjct: 108 IIGITGSNGKST----VTTLVYEMAKAAGIKVGMGGNIGIP-ALSLLNEDCDLYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ E T +N +D Sbjct: 163 FQLET----TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAE---TAVVNLED 215 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM---EVQLQGKSMEVVHH 286 + ++ A K + SF +++ AD+ L+ + +Q M EV L +V Sbjct: 216 KL-TFGEGENQA---KKVVSFAENQ-ADYWLKT--ENGKQYLMAKEEVILPCDEATLV-- 266 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N+L + + +++ AL F +G R++ A I++S Sbjct: 267 --GRHNYMNILAATALAQAVGINLEAIRTALRQF---KGLDHRFQLAHQANGVRWINDSK 321 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N S AA++ L + EG +LG D +E+ L N H+ Sbjct: 322 ATNVGSTVAALAGL-----YVEGTLHLLLG--------GDGKGADFSELADLINQPHIST 368 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 F K S H ETM+ F++ L GD+V++ S +C Sbjct: 369 YCFGRDG-KQLAALSSQSHLFETMEQAISFLRPHLKSGDMVLL--SPAC 414 >gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium IMCC9480] Length = 471 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 143/367 (38%), Gaps = 43/367 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAQGGLDPTFV--------IGGRLTSAGANAKLGAGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + ++ A + L G L Sbjct: 160 EADESDASFLN--LSPVIEVITNIDADHMETYEHDFNKLKQAFVDFTLRLPFYGIAVLCL 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286 DD + + K I ++G + AD + + V G + + + Sbjct: 218 DDVHVREIMPRI----AKPIMTYGFHEEADVRAIDARAVGGLMQFTVIQDGYPPLPISLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILT-ADVDTAIKALSVFHPKEGRGKRY-------RCALNQGF 338 G H QN + I L+ AD DT KAL+ F+ R RY R G Sbjct: 274 QPGMHNVQNACAAIAIARELSVADCDTQ-KALAEFNGVGRRFTRYGEIAFAGRDGKPGGT 332 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 F L+D+ Y +P A +S P GRR+ VL ++ D +VLS Sbjct: 333 FALVDD-YGHHPVETAATLSAARGAYP---GRRL-VLAFQPHRYTRTRDLFEDFVKVLSS 387 Query: 399 YN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447 + ++ V+ +G + D AL ++ V + E + + I + L DGDVV Sbjct: 388 TDALVLAEVYAAGEQPIVAADGRALAHALRVAGKVEPVFVEVIADMPETIMNMLRDGDVV 447 Query: 448 VVKSSNS 454 + + S Sbjct: 448 ITMGAGS 454 >gi|308174670|ref|YP_003921375.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|307607534|emb|CBI43905.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|328554600|gb|AEB25092.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens TA208] gi|328913005|gb|AEB64601.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens LL3] Length = 432 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 119/299 (39%), Gaps = 36/299 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A K T +A+TG+ GKT+T +L + K T IG + + Sbjct: 95 AEYMKKYTSVAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGD---------GTGKGNESSE 145 Query: 162 FGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +FE E R FL++ +P A++T I H F+ I+++ A + L+ Sbjct: 146 YFVFE-----ACEYRRHFLSY--QPDYAIMTNIDFDHPDYFANIDDVFDAFQNM--ALQV 196 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 I DD + K HA + +Y +G + DFQ R + +E + +V ++ Sbjct: 197 NKGIIACGDDEYL----PKIHA-NVPVVY-YGTGEENDFQARNIVKNTEGTTFDVFVRNT 250 Query: 280 SMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + G+H N L + + DV+ L F G KR G Sbjct: 251 FYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNMIKLGLESF----GGVKRRFNEKVIGS 306 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 LID+ Y +P +K I Q P E IAV +QSF + AE LS Sbjct: 307 QVLIDD-YAHHPTEIKVTIEAARQKYP--EREIIAVF--QPHTFTRTQSFLDEFAESLS 360 >gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 548 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 83/379 (21%), Positives = 141/379 (37%), Gaps = 50/379 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR + P + + A+ G + G F A GA + + + +P Sbjct: 59 VRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQARASGAAAALSDRPLPG------LPTL 112 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG- 141 V D L LA A L + + +TG+ GKT+T +L L S I Sbjct: 113 VVPDPRAVLGPLA--AHLHDHPSHHLEVYGVTGTNGKTSTTHLLDAGLRSAGHRTGMISG 170 Query: 142 --------SYNNHIGVP------LTLARM------PVDVDFGIFELGMSHLGEIRFLTHL 181 S P TLA + V+ L + + RF Sbjct: 171 IRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHGLALHRVDGTRF---- 226 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 AV T + HL E +AKA +F + +N DD+ L A+ Sbjct: 227 ---RAAVFTNLGRDHLDLHGDQESYFAAKASLF-APHRCALAVVNVDDAHGRRLAAQVRV 282 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T +S + AD++ + + ++++ + G V H +G H N L + Sbjct: 283 --PVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVDNALGAVA 340 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +V+ ++ + GR + R Q F L+D ++N A+ + + L Sbjct: 341 ALHAGGLNVEDVLRGMEDLTAVSGRLQ--RIDEGQPFLALVDYAHNV--AAQRRLLPFLR 396 Query: 362 QISPHGEGRRIAVLGDMCE 380 ++ GR + VLG E Sbjct: 397 TLT---GGRLVVVLGATGE 412 >gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae R3021] gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae R3021] Length = 437 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 69/356 (19%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GK+T + T+ K +G N IG+P L+ + D + + EL Sbjct: 107 IVGITGSNGKST---VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSS 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ K G LN +D Sbjct: 162 FQLET----TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNED 214 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 +FG+++N + + S W++ + GK +V Sbjct: 215 RL-----------------TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVI 256 Query: 288 --------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +G H N+L + + ++D+ AL F +G R++ A Sbjct: 257 LPCEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHF---KGLDHRFQLAHQANGI 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393 I++S N S AA++ L + EG+ +LG D E+ EL HI Sbjct: 314 RWINDSKATNVGSTVAALAGL-----YIEGKLHLLLGGDGKGADFSELAELINQPHI--- 365 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L+ F S + ETM+ F++ +L GD+V++ Sbjct: 366 -ICYCFGRDGALLAKF-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409 >gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1] gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1] Length = 482 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 75/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT +L A + T+ IG LT A + + + Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H++ + G ++ E L G + Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD + + + ++G S+ AD + +Q Q+ V + + +EV + Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSVN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + + I+ LS F +G G+R++ + G L+ Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIIQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P + A I + P RR+ ++ ++ + D +VL N+ Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWPS---RRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396 Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451 V+ +G + D+ + +D +++ ++ L GD+++ + Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQG 456 Query: 452 SNSCG 456 + G Sbjct: 457 AGDVG 461 >gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 464 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 27/192 (14%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L IPV ++L ARL + IA+ G+ GKTTT M+ L Sbjct: 98 LGIPVMHRGELL---------ARLMQEKKGIAVAGTHGKTTTSSMIAYVLEK-------- 140 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLS 198 ++ I V + + + G E ++ E FL L P+ AVIT I HL Sbjct: 141 EGFDPVIAVGGEIVDLGYNAKAGQGEYMVAEADESDGSFLKLL--PYAAVITNIEADHLD 198 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNAD 257 + EEI A + + + G +D+ E+LK K +++G S +D Sbjct: 199 YYQSFEEIKKAFKKFADNIRPEGFGVFCWDNLQVREMLKGYK-----KRKFTYGFSPGSD 253 Query: 258 FQLRKWKQCSEQ 269 F LR +++ Q Sbjct: 254 FMLRDYREEQNQ 265 >gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp. TrichCH4B] gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp. TrichCH4B] Length = 472 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 9/124 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IA+TGS GK+TT +L L + + G +IG + PVD + EL Sbjct: 122 VIAVTGSNGKSTTVALLHHILEHVGRNSQMAG----NIGRGVLDIDPPVDGGVVVLELSS 177 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228 R LT P +AV T + P HL +G+ +AK +F EG I ++ D Sbjct: 178 YQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGIDED 233 Query: 229 DSFF 232 + F Sbjct: 234 EGLF 237 >gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 476 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 53/271 (19%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M+ SSI YA G P V+ G+ + Sbjct: 107 IAVAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 146 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 147 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMETYQGDFENLKQTFINFLHN 205 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD Q+ ++Q Q ++ Sbjct: 206 LPFYGRAVMCVDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQIGPQGHFTLRR 261 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 Q KS + V + G H A N + + + D + ++ALS F +G G+R+ N Sbjct: 262 QDKSLLTVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALSSF---QGTGRRFDFLGN 318 Query: 336 ---------QGFFTLIDESYNANPASMKAAI 357 G L+D+ Y +P + A I Sbjct: 319 FPLEKVNGKSGSVMLVDD-YGHHPTEVSATI 348 >gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] Length = 544 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 51/385 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSL-- 81 V G+ + ++ I + F A+ G G F + A+ +GA ++ + +++ + G Sbjct: 52 VKGVDLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAILTDEAGLELIEAAGKAPD 111 Query: 82 -SIPVF---GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 S+PV DVLG ++ + R K ++ ITG+ GKTTT +L A++ + Sbjct: 112 RSVPVLVHPNPRDVLGEISA-EIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKP 170 Query: 138 ACIGSYNNHIG---VP--LTLARMP-----------VDVDFGIFE-----LGMSHLGEIR 176 +G+ I VP LT P +D + E L + + IR Sbjct: 171 GLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIR 230 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF--- 231 F I T ++ HL EE AKA +F E + + DD + Sbjct: 231 F-------DIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRR 283 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L A + + T+ + + + Q++ V G+S V G + Sbjct: 284 MAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRY 343 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N + L + D D A++AL G+ R Q F ++D Y PA Sbjct: 344 NVANAALALTVSFAAGLDPDAAVRALGTVDVP---GRVQRIDRGQSFLAVVD--YAHKPA 398 Query: 352 SMKAAISVLSQISPHGEGRRIAVLG 376 +++A I+ L P GR V+G Sbjct: 399 ALEAVIATLRNQVP---GRVAVVVG 420 >gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51] gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 496 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 38/236 (16%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G+ +DSR + P + + + G + DGHDF A+ +GA + +V I L IP Sbjct: 30 LIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAAL-----LVERILPLDIPQ 84 Query: 86 FGVDDVLGALNKLAV------AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V V + LA AA+L ++ +TG+ GKTT ++ + K Sbjct: 85 LQVKKVREVMGNLAANLYDHPAAKLE----VVGVTGTNGKTTITYLVESIAAGEGKKVGL 140 Query: 140 IGSYNNHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPH------------ 185 IG+ I G L R P +D M G ++ V H Sbjct: 141 IGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEG-VQLAVMEVSSHALVFGRVTGCEF 199 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELL 235 + + + HL +EE AKA++F GL K G + N DD E L Sbjct: 200 DAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVV--NGDDPAAETL 253 >gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga ochracea DSM 7271] gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea DSM 7271] Length = 486 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 79/373 (21%), Positives = 130/373 (34%), Gaps = 60/373 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR F AI G +GH++I A++ GA +V + +S V Sbjct: 23 ITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSGATAIVCEQLPQQPLPGVSYIVV 82 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 AL K ++ +TG+ GKTT +L Y Sbjct: 83 PNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTIATLL----------YQLFRKAGQK 132 Query: 147 IGVPLTLARMPVDVDFGIFE--------LGMSHLGEI-----------RFLTHLVRPHIA 187 G+ L+ + V VD FE L ++H + +H + H Sbjct: 133 AGL---LSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHRT 189 Query: 188 --------VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELL 235 + T + HL K F+ L T +N DD + Sbjct: 190 EGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNT 249 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 KA+ +KT +AD++ E + + L+ EV IG A N Sbjct: 250 KAQKKTYALKT--------HADYK----AYIIESRFDGLLLRINQHEVWTKLIGEFNAYN 297 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L ++L+ D A+ +S P GR + A G T++D Y P +++ Sbjct: 298 LLAVYATATLLSIDEIEALTLISAIEPVAGRFQYAVSAT--GVITIVD--YAHTPDALEN 353 Query: 356 AISVLSQISPHGE 368 + ++ I H E Sbjct: 354 VLKTINDIRTHNE 366 >gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032] gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032] Length = 432 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 111/263 (42%), Gaps = 32/263 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T +AITG+ GKT+T +L + S K T IG + +G + ++ +FE Sbjct: 102 TNVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGD-GSGMGKE--------NSEYFVFE-- 150 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H FS I+++ A + L+ I Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFSDIDDVFDAFQNM--ALQVKKAIIAC 203 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285 DD ++AK + +Y +G ++ DFQ R + +E + +V ++ + + Sbjct: 204 GDDEHLPKIQAK-----VPVVY-YGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYI 257 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + + + DV+ AL+ F G KR G LID+ Sbjct: 258 PAYGNHNVLNSLAVIALCHYESIDVELIKGALTTF----GGVKRRFNEKVVGAQVLIDD- 312 Query: 346 YNANPASMKAAISVLSQISPHGE 368 Y +P ++ I Q P E Sbjct: 313 YAHHPTEIEVTIEAARQKYPDRE 335 >gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 145 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIG 79 ++ ++IDSR++ P F A +G G DF A+ +GA + VN Sbjct: 31 ISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGAVAIAWEPNGPEVNRQAERLAT 90 Query: 80 SLSIPVFGVDDVLGALNKLA--VAARL----RSKATIIAITGSVGKTTTKEMLTIALSS 132 L IP+ V+ L +LA +AAR T+I +TG+ GKT+ +L AL S Sbjct: 91 QLPIPLIRVE----GLTRLASLIAARFFAYPSRSMTVIGVTGTNGKTSVSHLLAQALDS 145 >gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 438 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 79/355 (22%), Positives = 151/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDADRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A + + H+ + G+++ +AK ++E + Sbjct: 156 VLELSSF-QLETTSSL-QAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYENAK---VCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + +++KAL+ F G R++ AL Sbjct: 262 MKLS----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLALEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S + + LY Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSSLARYLTGDRIRLYC 369 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 G + AL+ + +ETM+ + + GD+V++ S +C Sbjct: 370 FGR---DGAQLAALRPEI-----AEQTETMEEAMRLLAPRVQSGDMVLL--SPAC 414 >gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] Length = 496 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 156/397 (39%), Gaps = 44/397 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A+ G + + G+ +S + + F + G DG DF A+ GA Sbjct: 3 LRELLAAVDGVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASGAL 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--------KATIIAITGSVG 118 +V+ + P G VL A + A+L + K ++ +TG+ G Sbjct: 63 AAIVSPAALQKN-----PPTGEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGS-YNNHIGVPLTLARM-PVDVD--------------F 162 KTTT ++ L+ + A +G+ Y G T P VD F Sbjct: 118 KTTTTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEAVNAGCEF 177 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G E+ L + R L +AV + + HL + +E+ +AKA +F G Sbjct: 178 GAMEVSSHALAQGRVLG--CEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGR 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + + L A +L + ++S+ + +AD + E + + L Sbjct: 236 AIINADDDYGQRLIA---SLSSERVWSYSVNNHSADLWMSDLSY--EPNGVSGMLHTPKG 290 Query: 282 EVVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V +G + +N+L +G V L D+ A+ F GR +R + Q Sbjct: 291 NVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEIS 350 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 ++D Y P S++ ++L P G+ I V G Sbjct: 351 VIVD--YAHTPDSLE---NLLKAARPFIPGKMICVFG 382 >gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio parahaemolyticus 10329] Length = 437 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 54/265 (20%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++AITGS GK+T ++ + + T G +IGVP L + D D + EL Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDADLYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ + A ++ H+ + G+ + +AK IF+ E +N DD Sbjct: 165 FQLET----TSSLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFDNAE---LAVVNRDD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 +++ + +FG S++ +++ G ++ HG Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255 Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335 +G H N L+ L ++ D A+ AL K G +RC A N Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310 Query: 336 QGFFTLIDESYNANPASMKAAISVL 360 +G +++S N AS AA+S L Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGL 334 >gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis MSMB43] Length = 465 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 48/369 (13%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG LT A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLTSAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P I VIT I H+ + + A E + L G+ + Sbjct: 160 EADESDASFLN--LYPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCI 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD+ + L K + +G S +A + + + V G+ + VV + Sbjct: 218 DDANVRQIV----PLISKPVVRYGFSADAQVRAENVEARDGRMHFTVLRDGREPLPVVLN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYR-----CALNQGFFT 340 G H QN L + I + L D AI +AL+ F+ G G+R++ + G +T Sbjct: 274 LPGLHNVQNALAAIAIATDLDV-ADAAIQQALAEFN---GVGRRFQRYGEIPVADGGAYT 329 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID+ Y +P M A I+ P GRR+ VL ++ D VLS + Sbjct: 330 LIDD-YGHHPVEMAATIAAARGAFP---GRRL-VLAFQPHRYTRTRDCFDDFVNVLSTVD 384 Query: 401 ---ISHVWLSGFHVL--ALKDALPRSIHVHYSETMDGLFLFIQSSLVD--------GDVV 447 ++ V+ +G + A DAL R++ + ++ +F+ + D GDVV Sbjct: 385 ALVLTEVYAAGEAPISTANGDALSRALRA--AGKVEPMFVAAVDEVPDALAKLARAGDVV 442 Query: 448 VVKSSNSCG 456 + + S G Sbjct: 443 ITMGAGSIG 451 >gi|218661065|ref|ZP_03516995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium etli IE4771] Length = 47 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG 48 M+ LWT D++ A+ G G +P+G + GISIDSRSI+P + +G Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGRSLLRDQG 47 >gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 450 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 VLG + A A R IIAITGS GKTT ++ G +IG P Sbjct: 99 VLGDIEIFAHIANRRGD-KIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAG----NIGTP 153 Query: 151 LTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 + A M + EL L T +RP A + I+ HL + + + A Sbjct: 154 VLEAEMQRGGKKAGVWVLELSSFQLEN----TESLRPSAAAVLNISEDHLDRYDDLLDYA 209 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 K +IF G+ G LN DD+ +K G+K F K AD+ L + Sbjct: 210 HTKDKIFRGV---GVQVLNADDALCRAMKRAGR--GVKW---FSLEKQADYWLER 256 >gi|315636191|ref|ZP_07891445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arcobacter butzleri JV22] gi|315479552|gb|EFU70231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arcobacter butzleri JV22] Length = 300 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 32/276 (11%) Query: 135 KTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 K Y S N G+ L + + +P D I E G G+I +T + P I VI ++ Sbjct: 6 KVYKTPRSVNTIGGIVLDVNKDLPADTQIYIAEAGARVKGDIEEITMFLEPQICVIGSVG 65 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLE-KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 H+ F +E I + K EI + K G + ++ I + K Sbjct: 66 EQHIEYFKTLENIINTKMEILKSPNMKMGFV---------------HESVPISNSQNITK 110 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 N+ L K + W +V++ G +G A N+ + + L D+ Sbjct: 111 FPNS---LHIVKSNLDGIWFDVEVGGNIEHFYAPILGSFNAINLTAVILVAHYLGMDILE 167 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 AL+ E R ++ ++D+S+N N M A+++ S EGR++ Sbjct: 168 IKAALTTLPQVEHRLQKIEA----NGKIIVDDSFNGNLEGMLEAVNICSSY----EGRKV 219 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + E + +I LA+ + N +V L+G Sbjct: 220 IITPGLVES---TDEANILLAKAID-ENFDYVILTG 251 >gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 539 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 29/258 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LS 82 V+G+++ S P F AI G G F A++ GA L++ TD V + L Sbjct: 58 VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLIL--TDEVGRREAFERRLG 115 Query: 83 IPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V + + L + + ++ T +A+TG+ GKTTT ++ AL+S + Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175 Query: 141 GSYNNHIGVPL------TLARMPVDVDFGIFELGMSHLGE--IRFLTHLVRPH------- 185 G+ +G P+ T A PV F + H G I H + + Sbjct: 176 GTVETSVG-PVSFEAVRTTAEAPVVARF-LAATDQYHCGAAVIELSAHALSLNRVDGIVF 233 Query: 186 -IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A T + HL + +E +AKA +F E + + DD + L HA Sbjct: 234 DVAAFTNLQHDHLDYYGDMETYFAAKALLFTP-EHSRRGVVCVDDEWGRRL--ADHATVP 290 Query: 245 KTIYSFGKSKNADFQLRK 262 T S + AD+Q+R Sbjct: 291 VTTVSALTHEAADWQVRN 308 >gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] Length = 495 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 153/384 (39%), Gaps = 46/384 (11%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G PQ + G+++DSR + F A+ G G FI A++KGA ++ + A+ Sbjct: 20 GADPQ--IRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD----AAGA 73 Query: 80 SLSIPVFGVDDVLGAL-------NKLAVAARL---RSKATIIAITGSVGKTTTK------ 123 ++ V D+ AL LA AA L T++A+TG+ GKT+ Sbjct: 74 GIAAKVL--DESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVRQI 131 Query: 124 ------EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGM---SHLG 173 E + + + I+ ++ ++ P+TL R + + G+ M SH Sbjct: 132 WTELGHEAVNMGTTGIEGAWSYPLAHTTP--EPITLHRALAAAAEAGVTHAAMEASSHGL 189 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFF 232 + R L V+ A T HL E +AKA +F L G +N +D Sbjct: 190 DQRRLDG-VQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRG 248 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 ++A + A G + I + ++ + M K +V + IG Sbjct: 249 AEMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQD--MRFAWHDKPYQVRLNLIGGFQ 306 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A+N+L+ G+ D + + L GR + + G +D Y P + Sbjct: 307 AENVLLACGLAIAGGEDPERVFETLPHLTTVRGR-MQLAAERDNGSAVFVD--YAHTPDA 363 Query: 353 MKAAISVLSQISPHGEGRRIAVLG 376 + +AI L PH GR IA++G Sbjct: 364 VASAIKAL---RPHVLGRLIAIVG 384 >gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp. MC-1] gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp. MC-1] Length = 454 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 9/142 (6%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 +N + + R +A + ITG+ GK+T ++ + L+ + T G+ + L+ Sbjct: 93 INDIELLFRHSEQAAFVGITGTNGKSTVTTLVGLMLARLPGTTRTGGNLGD-----AALS 147 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 DV+ + EL L I P +A + ++ HL ++G++ AKA IF Sbjct: 148 LWQADVERYVLELSSFQLESIEGF----HPEVAALLNLSDDHLDRYNGLQGYLRAKARIF 203 Query: 215 EGLEKTGTIFLNYDDSFFELLK 236 + + +N DD + ++ Sbjct: 204 QRQTQRDRAVINADDPALQPVR 225 >gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp. 3_1_44] gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp. 3_1_44] Length = 456 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 33/217 (15%) Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 MP D F + EL L I+ RP A+I I P HL+ +E +AK IFE Sbjct: 154 MPAD-GFLVAELSSYQLETIKHF----RPIGAIILNITPDHLARHKTMENYIAAKERIFE 208 Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQ 265 T + LN DD + +A SH L I Y+ G+ A + K+ Sbjct: 209 NQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVI 268 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E H G H +N+L + + L V+T + +S FH E Sbjct: 269 ADEDI---------------HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEH 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 R +R + F+ ++S N S+ A+ Q Sbjct: 314 RLERVKTIDGITFY---NDSKATNVDSVVKALESFDQ 347 >gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] Length = 514 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 93/240 (38%), Gaps = 35/240 (14%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G +P V+ + DSR + AF A+KG DGH ++ A GA L +V + A + Sbjct: 21 GALPVSIVDLVD-DSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIVEDEAAARV- 78 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTY 137 + +P V D + A A I A+TG+ GKTTT +L L + Sbjct: 79 -IDMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRA 137 Query: 138 ACIGSYNNHIG---------------VPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHL 181 A IG+ IG P+ L R + V D G+ + M +H Sbjct: 138 ASIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAME------TSSHA 191 Query: 182 VRPH--------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + H AV T + HL +E AK E+ L G N DD ++ Sbjct: 192 LHQHRVDGVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAPDGVACFNIDDVTWQ 251 >gi|207110009|ref|ZP_03244171.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPKX_438_CA4C1] Length = 136 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEK 219 I E G + G+I+ +T L+ PH+AVI + HL F +E I KAE+ + LEK Sbjct: 14 IAEAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKRLEK 71 >gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2] gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2] Length = 468 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 30/286 (10%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARM 156 LA RL+S IAI G+ GKTTT M+ L + I G N G T AR+ Sbjct: 100 LAELMRLKS---CIAIAGTHGKTTTTSMVATLLDAGALDPTVINGGIINAYG---TNARL 153 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ + E S + FL V +A++T + P HL +F E + A EG Sbjct: 154 GAG-DWMVVEADES---DGTFLKLPV--DVAIVTNVDPEHLDHFKTFEAVQEAFRHFVEG 207 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + D + + L K + + I ++G++ AD +L + + S +V++ Sbjct: 208 VPFYGFAVMCIDHAVVQALVGK---IEDRRIITYGENPQADARLVDLQPFTGGSKFKVEI 264 Query: 277 QGKSMEVVH-------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + H G H A N + + + + KAL+ F G +R Sbjct: 265 RHRKAGAAHVISDLVLPMPGRHNALNATAAIAVAYEVGMSDEAIRKALAGFG---GVKRR 321 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + T+ID+ Y +P + A VL +GR IAV+ Sbjct: 322 FTRTGEWNGVTVIDD-YGHHPVEIAA---VLKAARDSTKGRVIAVV 363 >gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris TIE-1] gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris TIE-1] Length = 467 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 42/327 (12%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA ++VV+T + L IPV ++L L +L + +AI G+ Sbjct: 65 KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115 Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTTT M+ L + I G N G T AR+ D+ + E S + Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGGG-DWMVVEADES---DG 168 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 FL + +A++T + P HL +F + + A E + G + D + L Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288 K + + I ++G++ AD +L S +V + + H Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMP 283 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H A N + + L DT KAL+ F G +R+ T+ID+ Y Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAF---GGVRRRFTKTGEWNGVTIIDD-YGH 339 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL 375 +P + A + Q + G+ IAV+ Sbjct: 340 HPVEIAAVLKAARQST---SGKVIAVV 363 >gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phymatum STM815] gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum STM815] Length = 512 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSIPVFGVDD 90 DSR IAP + F A D FI A+++GA V+V D A +L + V +++ Sbjct: 34 DSRKIAPGDVFLAYAVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALMVAVPRLNE 93 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 + G + A +I +TG+ GKT+ ++ AL+++ + A IG+ + G+P Sbjct: 94 LTGTIAS-AWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS--GMP 150 Query: 151 LTL 153 L Sbjct: 151 GQL 153 >gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 494 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 VN I+ DSR F A KG D H F V++G +VVVN ++ + + +P Sbjct: 23 VNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQGDVTQVIVP 82 Query: 85 VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + L VA+ L + T I +TG+ GKT+ M+ + K Sbjct: 83 -----------DTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKG 131 Query: 137 YACIGSYNNHIGVPLT--LARMPVDV-------------------DFGIFELGMSHLGEI 175 A +G+ I +T + P V + L + L + Sbjct: 132 SAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGV 191 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231 F +A+ + + HL +E AK+ +F + L + + +N DD F Sbjct: 192 EF-------DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPF 244 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 LK+ + + ++G + A F + + + + V IG Sbjct: 245 STYLKSVTPYESL----TYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRF 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V + A ++T K ++ P EGR Sbjct: 301 NIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGR 335 >gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila L48] gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48] Length = 482 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT +L A + T+ IG LT A + + + Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H++ + G ++ E L G + Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD + + + ++G S+ AD + +Q Q+ V + + +EV + Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDCEPLEVSVN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + + ++ LS F +G G+R++ + G L+ Sbjct: 285 MPGNHNVLNALATIAIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P + A I + P RR+ ++ ++ + D +VL N+ Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWPS---RRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396 Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451 V+ +G + D+ + +D +++ ++ L GD+++ + Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILICQG 456 Query: 452 SNSCG 456 + G Sbjct: 457 AGDVG 461 >gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus tetradius ATCC 35098] gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus tetradius ATCC 35098] Length = 438 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 22/236 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTL 153 ++ + ++ RL +A II+ITG+ GKT++ M+ ++ ACI S +IG + L Sbjct: 84 ISDIELSYRLYPQAKIISITGTNGKTSSTSMVNHIVNE-----ACIKSIAVGNIGEGI-L 137 Query: 154 ARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 +M + D F EL L + T PHIA IT I H+ E+ ++K Sbjct: 138 WQMYNNKDAFFACELSSFQLHD----TKTYHPHIACITNITEDHIDWHGSFEDYINSKLN 193 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-W 271 I + ++ + +N++D + K A +Y F SKN ++ + + + + Sbjct: 194 ITKNQDENDFLIINHEDKILQDHKKDYKA----QVYEFS-SKN---EVERGAYLKDGAIY 245 Query: 272 MEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ + + K ++V IG H +N+++ L + + IK L F E R Sbjct: 246 LKDKEEIKVIDVDELSVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIEHR 301 >gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS] gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS] gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS] gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS] gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS] gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS] Length = 484 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 18/281 (6%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 V A+L + T + +TG+ GKTTT ML +AL C ++ V L + Sbjct: 107 VLAKLMAGHTTLMVTGTHGKTTTTSMLIVALQH------C--GFDPSFAVGGDLGEAGTN 158 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 G E ++ E P +AV+T I HL F E + E L Sbjct: 159 AHHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTP 218 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQ 277 G + DD L ++ ALG++ + +G + D L W+Q + +QL Sbjct: 219 GGALIACVDDPGSAALAERTAALGVR-VLRYGSAGGRDLAGALVGWEQQGTGAVAHIQLA 277 Query: 278 GKSMEVVHH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G+S G HMA N L L + AD DT + L+ F EG +R+ Sbjct: 278 GESAPRAMRLSVPGRHMALNALGALLAALQVGADPDTVLDGLAGF---EGVRRRFELVGT 334 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH-GEGRRIAVL 375 + D+ Y +P + A ++ L ++ G+GR + V Sbjct: 335 ATGVRVFDD-YAHHPTEVAATLAALRAVTDQAGDGRAVVVF 374 >gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase [Staphylococcus pseudintermedius ED99] Length = 494 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 57/335 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 VN I+ DSR F A KG D H F V++G +VVVN ++ + + +P Sbjct: 23 VNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQGDVTQVIVP 82 Query: 85 VFGVDDVLGALNKLAVAARL--------RSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + L VA+ L + T I +TG+ GKT+ M+ + K Sbjct: 83 -----------DTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKG 131 Query: 137 YACIGSYNNHIGVPLT--LARMPVDV-------------------DFGIFELGMSHLGEI 175 A +G+ I +T + P V + L + L + Sbjct: 132 SAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGV 191 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSF 231 F +A+ + + HL +E AK+ +F + L + + +N DD F Sbjct: 192 EF-------DVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPF 244 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 LK+ + + ++G + A F + + + + V IG Sbjct: 245 STYLKSVTPYESL----TYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRF 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 N++ + V + A ++T K ++ P EGR Sbjct: 301 NIANLMAAMLGVWVKGAPLETVTKVVADLEPVEGR 335 >gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella cf. novicida Fx1] Length = 487 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 20/223 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + AF A+KG DG+ +I + KG LV+ ++ VF Sbjct: 23 IESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSQEFED----QKRVF 78 Query: 87 GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+ LA K II ITG+ GKT+ + L + +G+ N Sbjct: 79 YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 I P +D +S+ R L V H +A+ + + Sbjct: 139 GI-YPNLRESTHTTLDILSLYQTISYYKNYRNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + HL ++ AKA++F+ ++ +N DD + + L Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239 >gi|222823307|ref|YP_002574880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter lari RM2100] gi|222538528|gb|ACM63629.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Campylobacter lari RM2100] Length = 399 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 + I+G+ GKTTT +M L K+ A +G+ +IG+PL A+M + I E Sbjct: 89 VWISGTNGKTTTTQMTHHLL---KRINAQMGA---NIGIPL--AQMDISAKLWILESSSF 140 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L F T + +P I + I P HLS E AK + E + + + L Sbjct: 141 SL----FYTKIAKPEIYALLPITPDHLSWHKSFENYEQAKLSVLERMNENDVVIL 191 >gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] Length = 536 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 47/292 (16%) Query: 3 PLWTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 P DL +A + G + G G GI++D+R +AP E F A+ G H G F Sbjct: 13 PRTALADLARAHGLRLTGPAAG---AGEALGITLDNRGLAPGEIFAALPGAHTHGARFAA 69 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK----------LAVAA----RL 104 A GA V+ + A+ + IPV V DV G+ + AVAA R Sbjct: 70 AAAAAGASAVLTDASGAAAAEAAGIPVL-VADVDGSGDGAGRAEFREIVAAVAADVYGRP 128 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----- 159 + A+TG+ GKTTT +L L + + IG+ IG + AR+ Sbjct: 129 AERLRTFAVTGTNGKTTTSFLLAHLLGLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDL 188 Query: 160 -------VDFGIFELGM---SHLGEIRFLTHLVRP---HIAVITTIAPAHLSNFSGIEEI 206 V+ G+ +L M SH E+ H V P +A T + HL +E Sbjct: 189 HALLAHMVEAGVTDLVMEVSSHALEL----HRVDPVRFDLAAFTHLTQDHLDFHGDLEHY 244 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNA 256 +AKA +F + ++ DD + L + A GI T+ + G+ A Sbjct: 245 YAAKASLFT-PARARRAVVSVDDEWGRRLAGDARAAGIDVATLATRGEHAAA 295 >gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv. campestris] Length = 477 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 92/224 (41%), Gaps = 21/224 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 G H N L I L DT +AL F G G+R+ Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRF 324 >gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] Length = 485 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 155/375 (41%), Gaps = 44/375 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSI 83 + G+++DSR++ P E FFA+ G DG FI A+ GA V + TD + Sbjct: 22 ITGLAVDSRAVKPGELFFALAGAKTDGARFIAQAIAAGAVAVAGDHLPTD------EQGV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLT---IALSSIKKT 136 + VD+ AL A R ATI A+TG+ GKT+ T+++ +A +SI T Sbjct: 76 ALVRVDNPRRALALAASKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRQGLASASI-GT 134 Query: 137 YACIGSYNNHIGV-----PLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188 I + G P+ L RM ++ D L S G ++ VR Sbjct: 135 IGLIAPQRSVYGSLTTPDPIALHRMVDEIASEDVTHLALEASSHGLDQYRLDGVRIAAGG 194 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIK 245 T ++ H+ + +AK +F L I ++D S + A++ L + Sbjct: 195 FTNLSRDHMDYHPTVAHYLAAKLRLFRDLVAPSGAAVISADHDCSAEVVAAARARKLRLI 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T+ G A +LR + ++ QG+ ++ +G +N L+ G+ Sbjct: 255 TVGRNG-DPGAGIKLRSASIDGFAQRLILEHQGRMQNLLLPLVGEFQIENALVAAGLAIG 313 Query: 306 LTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +D D+ +AL+ +GR G+R G +D Y P ++ A+ L Sbjct: 314 TGSDADSVFEALTQLEGAKGRLELVGER------NGAPIFVD--YAHKPDALAKALQAL- 364 Query: 362 QISPHGEGRRIAVLG 376 P+ + + I V G Sbjct: 365 --RPYAKRQLIVVFG 377 >gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160] gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160] Length = 467 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + A Q+R + + M ++ S+++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAAEA--QVRAVNVEAREGRMHFTAMREDAPSLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 + G H QN L + I + L +AL+ F+ R +RY G Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGQVAG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 SYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila str. Corby] gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella pneumophila 2300/99 Alcoy] gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila str. Corby] gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella pneumophila 2300/99 Alcoy] Length = 447 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 24/227 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGV 88 + D+R AP A F + P D ++ Q ++ TD++ S G +L PV Sbjct: 30 VVFDTRKEAPGLAEFQNEFP-----DVPIYLQQTPDEVISQVTDVITSPGLALDTPVLER 84 Query: 89 DDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 GA + AR S A +IAITG+ GK+T +T + + K + + Sbjct: 85 ARQAGASIYGDIECLAREIS-APVIAITGTNGKST----VTTLVGEMAKAAGFRVAVAGN 139 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG P L + D + EL L LT+ + P +A I + P HL +E Sbjct: 140 IGTPVLDMLDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEA 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 AK I+ G + + N +D + + +S IK I SFGK Sbjct: 196 YTQAKQRIYSGAK---AVLFNREDVY--TVPHQSCQADIKCI-SFGK 236 >gi|170017481|ref|YP_001728400.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20] gi|229620040|sp|B1MZK4|MURC_LEUCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169804338|gb|ACA82956.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc citreum KM20] Length = 444 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 31/266 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T IA+ G+ GKT+T +L + +I T IG GVP + F + Sbjct: 102 AQTTSIAVAGAHGKTSTTGLLAHVVKNIAPTSYLIGDGTGR-GVP--------NSQFFVV 152 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E E R P A++T I H + I ++ A ++ ++K IF Sbjct: 153 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYEDINDVTRAFSDFANHVKK--DIFA 205 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 DD + LL+ K+ +Y +G S+ DF ++ ++ S +V +G+S+ E Sbjct: 206 WGDDPYLRLLQPKA------DVYYYGTNSEQDDFVATNIRKSTQGSHFDVVFRGQSLGEF 259 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLI 342 G H N L + + + D+ + IK+ + + +G + R + Q T+I Sbjct: 260 SVPLFGQHSILNALSVIAVAYMEKMDL-SLIKSFLMTY----QGVKRRFSEKQIADITVI 314 Query: 343 DESYNANPASMKAAISVLSQISPHGE 368 D+ Y +P + A + Q P+ + Sbjct: 315 DD-YAHHPTEIDATLDAARQKYPNKQ 339 >gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga lytica DSM 7489] gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga lytica DSM 7489] Length = 444 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 57/241 (23%) Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----------ARLRSKATIIAITGSVG 118 ++N D+V + P G+ D + + KLA A + ATII ITGS G Sbjct: 60 ILNADLV-----MKSP--GIPDKVALVQKLAAKNIPVISEIEFASKYTDATIIGITGSNG 112 Query: 119 KTTTKEMLTIALS----------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFE 166 KTTT M+ L +I +YA + S NN L ++ +D VDF Sbjct: 113 KTTTTMMVNHILKEEGLHVGMAGNIGDSYAKMVSENNFDYYVLEISSFQLDGIVDF---- 168 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225 +PHIA+IT I P HL ++ + ++K I E + + Sbjct: 169 ----------------KPHIAIITNITPDHLDRYNYEFDNYITSKFRIAENQTEDDYLIY 212 Query: 226 NYDD----SFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQG 278 + DD S+ E KS + F + KN + E + + L+G Sbjct: 213 DADDEVLVSWLEKHPVKSKLIPFSLTKQFKEGVCLKNNKIHITTQNNTIEMATDNLALEG 272 Query: 279 K 279 K Sbjct: 273 K 273 >gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2] gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2] Length = 460 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 48/322 (14%) Query: 64 GAGLVVVNT----DMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VV +T D V + + L+IP L++ + ARL ++ IA+ G+ Sbjct: 64 GADIVVYSTALSRDNVERVAAEELNIPT---------LHRSQMLARLLNERKGIAVAGAH 114 Query: 118 GKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTTT M+ + + ++ TY IG ++G + +F + E S + Sbjct: 115 GKTTTSSMIALVMERCNVDPTY-IIGGEITNLGTNAKAGKS----EFVVAEADES---DG 166 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD-SFFE 233 FL + P ++T I HL N+ G + SA + + G + DD + E Sbjct: 167 SFLQY--HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIVCADDQNIRE 224 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHM 292 +L L + I ++G AD+ + + + +G ++ + + G H Sbjct: 225 MLP----QLQTRVI-TYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIELSVPGKHN 279 Query: 293 AQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N + T ++S L A + D + FH G +R++ L +G LI + Y +P Sbjct: 280 MYNAMAT--VISCLEAGIPFDQIAATIVEFH---GAKRRFQV-LGEGNDILIIDDYAHHP 333 Query: 351 ASMKAAISVLSQISPHGEGRRI 372 ++A IS + G+RI Sbjct: 334 TEIEATIS-----AARATGKRI 350 >gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum] Length = 464 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 22/266 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ GS GKTTT M+ L+ C+ G G + + IF + Sbjct: 109 VAVAGSHGKTTTTSMIAHVLAHGGLDPTCVVGGRVPGFGGNARVGKK------NIF-IAE 161 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + FL + PH+AV+T + HL + +++ +A + G DD Sbjct: 162 SDESDGSFLK--ISPHVAVVTNVDQEHLDYYQSFDQLKAAFERFLTSVPPEGLAVACLDD 219 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGI 288 + +A +++G S AD + V+L+GK + V + Sbjct: 220 PELSNILPSLNA----PHWTYGFSPAADVVGSDVSAEGLSTSFSVRLRGKDIGTFVLNVP 275 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L T+ + + + A +AL F G G+R+ +G ++D+ Y Sbjct: 276 GVHNVLNALATIAVAHHFGLEAECAREALERF---RGVGRRFTQVGEEGGIRIVDD-YGH 331 Query: 349 NPASMKAAISVLSQISPHGEGRRIAV 374 +P + ++ Q P RR+ V Sbjct: 332 HPTEIGVTLAAARQAYPD---RRLVV 354 >gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp] gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp] Length = 480 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 26/258 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT +L A + T+ IG N G L F + Sbjct: 121 IAVAGTHGKTTTTSLLASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRFLIA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P ++V+T I H+S + G + E L G L Sbjct: 173 EADESDASFL-HL-QPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVLCV 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHH 286 DD L + +G T+ ++G +++AD + +Q +++ V + + ++V + Sbjct: 231 DDPVVRELLPQ---VGRPTV-TYGFAEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSVN 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + D + LS F +G G+R++ ++ G L+ Sbjct: 287 MPGNHNVLNALATIAIATDEGIDDAAIVAGLSGF---QGVGRRFQVYGELPVDGGSVMLV 343 Query: 343 DESYNANPASMKAAISVL 360 D+ Y +P + A I + Sbjct: 344 DD-YGHHPREVAAVIKAV 360 >gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 462 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%) Query: 51 YDGHDFI-LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 +D DF V G+ + N ++ A+ +PV+G ++ +AAR Sbjct: 63 HDAADFTGADLVVASPGVPLANPEIQAAR-RRGVPVWG---------EVELAARFLGGLP 112 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE 166 I+ ITG+ GK+TT + L+ ++T+ ++G PL+ L+ P + E Sbjct: 113 IVGITGTNGKSTTTALTGALLARHRRTF-----VGGNLGTPLSELVLSGEPAAA--AVVE 165 Query: 167 LGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L L I RF R +A + + P HL + ++ A+AKA +F E Sbjct: 166 LSSFQLEGIERF-----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQEPDDVAVA 220 Query: 226 NYDD 229 N D Sbjct: 221 NARD 224 >gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris CGA009] gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris CGA009] Length = 467 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 79/340 (23%), Positives = 132/340 (38%), Gaps = 48/340 (14%) Query: 63 KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA ++VV+T + L IPV ++L L +L + +AI G+ Sbjct: 65 KGADVLVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGT 115 Query: 117 VGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTTT M+ L + I G N G T AR+ D+ + E S + Sbjct: 116 HGKTTTTSMVAALLDAGDLDPTVINGGIINAYG---TNARLGGG-DWMVVEADES---DG 168 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 FL + +A++T + P HL +F + + A E + G + D + L Sbjct: 169 TFLK--LPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTL 226 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GI 288 K + + I ++G++ AD +L S +V + + H Sbjct: 227 VGK---IEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAHEIADLKLPMP 283 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H A N + + L DT KAL+ F G +R+ T+ID+ Y Sbjct: 284 GRHNALNATAAIAVAHELGLSDDTIRKALAAF---GGVRRRFTKTGEWNGVTIIDD-YGH 339 Query: 349 NPASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379 +P + A + V++ + PH R ++ + C Sbjct: 340 HPVEIAAVLKAARQSTAGKVIAVVQPHRFSRLQSLFEEFC 379 >gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter crescentus CB15] gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter crescentus NA1000] gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter crescentus CB15] gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter crescentus NA1000] Length = 471 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 8/154 (5%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 AA + IIAITG+ GK+TT ++ +S + G N +GV L L M Sbjct: 109 AAPAHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRVGG--NIGLGV-LGLEDMHGGA 165 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + EL L LT ++P V+ I+P HL G++ +AK IF K Sbjct: 166 VY-VLELSSYQLD----LTSSLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKG 220 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 T + DD++ + + + A +TI+ K Sbjct: 221 DTAIIGVDDAWCQQICTEITAANRRTIWPISAGK 254 >gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] Length = 505 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 10/108 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 ++ I++DSR + F A+ G DG +I A++ GA ++ D +A+ G +++ Sbjct: 32 IDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIANEGDIALKDG 91 Query: 85 --VFGVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEML 126 + + D+ L+ A+A R K + A+TG+ GKTT ++L Sbjct: 92 VYIIYLQDLNHKLS--AIAGRFFDHPDQKLALYAVTGTNGKTTISQLL 137 >gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina loihiensis L2TR] gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina loihiensis L2TR] Length = 463 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 31/277 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 SK I+A+TGS GK+T M+ K A G +IGVP L L D I Sbjct: 117 SKLPIVAVTGSNGKSTVTRMVEFVAKQCGKNVAAAG----NIGVPVLDLLLQEQHPDAVI 172 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L + L + A + I+ H+ + ++E AK IF KT + Sbjct: 173 LELSSFQLESVSSL----KLKAAALMNISADHMDRYCTLDEYVKAKQRIFTH-AKTWILN 227 Query: 225 LNYDDSFFELLKAKSHALGIKT-IYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D++ + K G + FG S N D R + V L+ ++ Sbjct: 228 RQQQDTWPHPVTGKLMTFGNDSHPKHFGLLSGNID---RVSGPVAVTFDGSVVLRADQLQ 284 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFF 339 + G H N+ L + + D++ A++A+ KE +G +RC L N+G Sbjct: 285 LQ----GIHNLVNVQAALALCQAIDIDIEAAVRAV-----KEFKGLPHRCELVSDNEGVL 335 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 +++S N + AA+ L P GR + + G Sbjct: 336 -WVNDSKATNIGATAAAVEGL---RPMINGRLLLIAG 368 >gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC 700633] gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC 700633] Length = 443 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 58/301 (19%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +AITGS GKT+T +L LS+++ T IG H GV + ++ + E Sbjct: 107 VAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGH-GVEGS--------EYFVLEA--- 154 Query: 171 HLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + H + +P A++T I H ++ I+++ SA E F K G I D Sbjct: 155 ----CEYKRHFMAYKPDYAIMTNIDFDHPDYYTDIDDVQSA-FESFGRQVKKGIIACGDD 209 Query: 229 DSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 A+ H L + T I +G +K+ D ++ +E S +V + GK Sbjct: 210 --------ARLHELDVTTPITYYGIAKSNDVVAENIEKDTEGSHFDVYIYGK-------- 253 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE--------GRGKRYRCALNQGFF 339 + + T G +IL A L+ F+P+E G KR Sbjct: 254 ---FYGKFDIPTFGTHNILNALAIITFYYLNNFNPEELASNLKTFGGVKRRFSEKKIKEI 310 Query: 340 TLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID+ Y +P+ ++A + Q PH R IA+L + + L+ + Sbjct: 311 TVIDD-YAHHPSEIRATLDAARQKYPTKKIVAVFQPHTFTRTIALLDEFAKALSLADDVY 369 Query: 390 I 390 + Sbjct: 370 L 370 >gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1] Length = 497 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 112/274 (40%), Gaps = 29/274 (10%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A+ + + G+ GKTTT ML++ LS + V + M + G L Sbjct: 110 ASGVGVAGTHGKTTTSSMLSLVLSRA--------GLAPTLYVGARMRDMGTNALLGEGRL 161 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 ++ L E L RP ++++T + H+ +F E++ A A G ++ + + Sbjct: 162 FLAELDESDGSFELFRPAVSIVTNVDWDHVDHFPSFEDVILAFARFASGRKEGAPLIVCA 221 Query: 228 DDS----FFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSWMEVQLQGKSME 282 +D E L+ G Y +G+S + F L + + V +GK + Sbjct: 222 EDEGAQRMLEGLR------GPLLRYGWGRSWDWGAFDL--VPRATGGISCSVCRKGKVLG 273 Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + G H N L L +L + A L FH G +R + G T+ Sbjct: 274 PLELSVSGEHNVLNALAALAAADVLGVPFEKAAATLKDFH---GAARRLQTKGTLGGVTV 330 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ID+ Y +P + A +S L I P+ RRI +L Sbjct: 331 IDD-YAHHPTEIAATLSALRGIYPN---RRILLL 360 >gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 515 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 38/327 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G + D+ + P F A+ G G + A+ +GA VVV V + + V V Sbjct: 27 GTAFDADRVVPGSLFIAVPGHLEGGPGAVAPALARGAAAVVVEDGCVVPTAAGDVCVVQV 86 Query: 89 DDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGS 142 D A AVAA + ++AITG+ GKT+ M+ AL + A IG+ Sbjct: 87 PD---ARRTAAVAASRYFGEPGRRMDMVAITGTNGKTSVSYMVESALRISEGARAGVIGT 143 Query: 143 YNNHIG-----VPLTLARMPVDVDF------------GIFELGMSHLGEIRFLTHLVRP- 184 + IG +P ++ P D G L + +G LTH + Sbjct: 144 AGSRIGDELIPMPRSVLSTPESPDLQYLLGYMRDRGVGTVVLEATSMG---LLTHRIDRT 200 Query: 185 --HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V T ++ HL + +E AK +F+GL + + N DD + A+ A+ Sbjct: 201 FIDVGVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCEHAVV--NADDP----VGARIGAM 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++ ADF+ + + + QG+ G N L + Sbjct: 255 MPGAVTTYALDAEADFRATDLTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAA 314 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKR 329 L D+ + AL GR +R Sbjct: 315 CHTLGHDLAGLVSALGRMPQIPGRFER 341 >gi|323466063|gb|ADX69750.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus H10] Length = 437 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 32/260 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L + T IG GVP D F ++E Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F ++ SA + +K +F+ Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + LK Y++G + DFQ + K+ + S V GK + E Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATEIKKSTTGSKFHVLAHGKDLGEFEI 263 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N + + +D L F +G +R+ + G +ID+ Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P M+A I Q P Sbjct: 319 YAHHPTEMRATIQAARQKFP 338 >gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp. 83/13] gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13] gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF 2653] gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13] gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF 2653] Length = 467 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWSQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92] gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92] Length = 482 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 146/346 (42%), Gaps = 36/346 (10%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT +L A + T+ IG N G T A+M + + Sbjct: 121 IAVAGTHGKTTTTSLLASIFAEGELDPTF-VIGGRLNSAG---TNAKMGT----SRYLVA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +A++T I H+ + + E L G + Sbjct: 173 EADESDASFL-HL-QPMVAIVTNIDADHMETYENDFSRLKKTFVEFLHNLPFYGLAVMCV 230 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QG-KSMEVV 284 DD E+L S + + ++G S++AD++ +Q + V+ +G ++V Sbjct: 231 DDPVVCEILPEIS-----RPVLTYGVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVS 285 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFT 340 + G+H N L T+ + S + AL F EG G+R++ ++ G Sbjct: 286 LNMPGHHNMLNALATIAVASDEGISDEAICSALEKF---EGVGRRFQVLGDVSVTDGTAM 342 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 L+D+ Y +P + A + + + P +R+ ++ ++ + D EVLS + Sbjct: 343 LVDD-YGHHPREVNAVVKAIREGWPE---KRLVMIYQPHRYSR-TRDLYEDFVEVLSEVD 397 Query: 401 I---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + V+ +G +A D+ + +D +F+ + S+ D Sbjct: 398 VLLLLEVYAAGEEPVAGADSRSLCRSIRQRGRLDPVFVSDKDSVAD 443 >gi|296101254|ref|YP_003611400.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055713|gb|ADF60451.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 491 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 53/272 (19%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M+ SSI YA G P V+ G+ + Sbjct: 122 IAIAGTHGKTTTTAMV----SSI---YAEAGLD-------------PTFVNGGLVKAAGV 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGHSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S++AD ++ ++KQ Q + Sbjct: 221 LPFYGRAVMCVDDPVIRELLPR---VG-RQITTYGFSEDADVRVEEYKQIGAQGHFTLAR 276 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--- 332 Q K + V + G H A N + + + D D ++AL F +G G+R+ Sbjct: 277 QDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESF---QGTGRRFDFLGE 333 Query: 333 ----ALN--QGFFTLIDESYNANPASMKAAIS 358 A+N G L+D+ Y +P + A I Sbjct: 334 FPLDAVNGKPGTAMLVDD-YGHHPTEVDATIK 364 >gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] Length = 505 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 98/432 (22%), Positives = 162/432 (37%), Gaps = 62/432 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + IS P + F H D A+++GA ++ + L+IP Sbjct: 32 VCSAISTTEVDCEPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQLL-----PLAIPQ 86 Query: 86 FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 V D AL + A+ +K I ITGS GKT T ++ L + + I S Sbjct: 87 AIVPDAREALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSL 146 Query: 143 -YNNHI-------GVPLT------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 Y++ I P + ++RM V + MS G + T IAV Sbjct: 147 GYSDSIEQVSTKCATPRSPKLAWWMSRM-VKNKAAAAVIEMSSQGLSQRRTAGTSLDIAV 205 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTI 247 +T + H S +AK IF L+ G +N DD +LL+ +L T+ Sbjct: 206 LTNLRNVHTSEHGSAANYLAAKKRIFSHLKPGGLAIINADDHRSRQLLE----SLACPTL 261 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G AD R + + + ++++V IG N L + + L Sbjct: 262 -TVGLHAEADISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLG 320 Query: 308 ADVDTAIKALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 ++ T ++ + + P G+ R + Q F ++D + + P ++ A+ ++ Sbjct: 321 IELSTIVRGIENVTYLP----GRMQRLEVGQEFGVIVDAA--STPDTLAIALKTARRVTK 374 Query: 364 -------SPHGEGRRIA--VLGDMCEMGELSQSFHIDLAEVL-------SLYNISHVWLS 407 S GE R A +L + E G DLA + S I+H L Sbjct: 375 GRVLLVFSASGEKNRDARPMLARVAEQGA-------DLAVITSGNPRRESPREITHQLLD 427 Query: 408 GFHVLALKDALP 419 GFH A +P Sbjct: 428 GFHRPAKAHFIP 439 >gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 464 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 83/385 (21%), Positives = 157/385 (40%), Gaps = 65/385 (16%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++GS GKTTT ++++ + + Y+ P L VDV G +G S Sbjct: 112 IAVSGSHGKTTTTSLISVIFNGM--------GYD-----PTVLVGGEVDVIGGNVRVGNS 158 Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 F+T P+IAVI + HL F I+ I + + + G Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDG 214 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277 + DD+ + + L K I ++G K++D++ + K C + +V + Sbjct: 215 YVVACKDDANTMYV---VNGLN-KNIVTYGIYKDSDWKAKNIGFDDKGC---AIFDVYYK 267 Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + M I G H N L L + ++ D+ A L+ F +G +R+ Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEIKGIV 324 Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387 T++D+ Y +PA +KA + ++ PH R A+L E ++S Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKALL------NEFAES 377 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443 F D A+ + + +I +++ KD + + V Y + D + ++ + Sbjct: 378 F--DNADKIIIADIYAAREKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKA 435 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEF 468 GD+V+ + + Y + + L+++ Sbjct: 436 GDLVLTIGAGN--IYEVGEMFLKDY 458 >gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans PsJN] gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans PsJN] Length = 467 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 147/368 (39%), Gaps = 42/368 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVH 285 DD + E+L S K I +G + +A + K + + ++ +++V Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDAQVRAVNVKAHDGKMHFTAMREDAAPIDIVL 272 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFF 339 + G H QN L + I + L +AL+ F+ R +RY G + Sbjct: 273 NLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSEGKASGAY 332 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 333 TLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLSTV 387 Query: 400 N---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDVV+ Sbjct: 388 DALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAVVRDGDVVI 447 Query: 449 VKSSNSCG 456 + S G Sbjct: 448 TMGAGSIG 455 >gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium capsulatum ATCC 51196] gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium capsulatum ATCC 51196] Length = 461 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V ++T + + +P+ G ++ +AAR K +AITGS GKTTT + Sbjct: 78 VPLDTPELVQVRKFGLPIIG---------EVELAARFL-KGKTLAITGSNGKTTTTSLCG 127 Query: 128 IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + G +IG+P + L D + + E+ L T RP I Sbjct: 128 AILERAHQHVQVGG----NIGLPVIALVDDSRDDGWSVLEISSFQLET----TERFRPGI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 AVI I P HL E +AK IF + LN Sbjct: 180 AVILNITPDHLDRHGSFENYVAAKERIFAAQTHDDALILN 219 >gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 514 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 79/376 (21%), Positives = 148/376 (39%), Gaps = 43/376 (11%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+++ S + P + + ++G G F A GA V+ + D +A +PV Sbjct: 40 TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDGLAEARDSGLPVIL 99 Query: 88 VDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D AL +A V + AT+ +TG+ GKT+ +L L + + Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159 Query: 146 HIGVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVIT 190 IG +R+ P + L E+R +T V +A Sbjct: 160 RIGEESITSRLTTPEASELHAL-LARMREAEVRAVTIEVSAQALTRHRVDGLVFDVAAFI 218 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ HL +++ EE AKA F+ + G + L D+ + + + + TI S Sbjct: 219 NLSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSL---DTVWGQRIVEQSRIPMTTI-S 274 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGIVSIL 306 AD+++ +Q + + +L+G V+ + G+ MA N L IV ++ Sbjct: 275 AQPGIEADWRVTVLEQTPDSTGF--RLEGPDNRVLVSSVPVPGWFMAAN--AGLAIVMLV 330 Query: 307 TADVDTAIKALSVFHPKEG------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + D + A++ ++G G+ R + + G +D Y P + + + L Sbjct: 331 ESGYD--LDAVAHVLDRDGGIQAYIPGRAERVSGDTGPLFFVD--YGHTPDAFEQTLQAL 386 Query: 361 SQISPHGEGRRIAVLG 376 +P G+ + V G Sbjct: 387 RPFTP---GKLVMVFG 399 >gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] Length = 497 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +R IA +T I HL E ++K +F+ L+K G +N + + +LL K Sbjct: 195 IRFDIAGLTNITRDHLDYHPTFEHYVNSKLHLFDLLKKDGIAVIN--EEYVQLLNGKK-- 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + +FG ++NA +++ + ++ + +V IG + A N+ + L Sbjct: 251 --VPNLVTFGVNENAQYKISDITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLA 308 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + ++D I +S F +GR + A G +ID + +P +++ IS Sbjct: 309 GLVEIGYEIDEVISYISSFRGVDGRFEPIPEARRLGIEVVID--FAHSPDALEKVISSAR 366 Query: 362 QISPHGEGRRIAVLG 376 +++ +GR I V G Sbjct: 367 KLA---KGRVIVVYG 378 >gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus megaterium DSM 319] gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus megaterium DSM 319] Length = 449 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 29/262 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164 S+A I ITGS GKTTT ++ L +K G +IG V +A+ + + Sbjct: 109 SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAG----NIGTVACEVAQKATKDNVIV 164 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L I RP I+++ + AHL EE AKA +F Sbjct: 165 TELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDFAV 220 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280 +N DD ++KA + K +S ++ +K S +V L GK Sbjct: 221 INADDEL--VMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK- 277 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 H +N+L + +V + + + L+ F + R +Y +N+ F Sbjct: 278 ----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRV-QYVTTINKRKF- 325 Query: 341 LIDESYNANPASMKAAISVLSQ 362 ++S N + K A+S SQ Sbjct: 326 -YNDSKATNMLATKVALSAFSQ 346 >gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 514 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ ++ DSR + P F AIKG H DGH +I A+++GA VV + A +IP Sbjct: 23 ISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGAVAVVYDDPHQAP--PATIPSA 80 Query: 87 GVDDVLGALNKLAVA 101 V D AL+ +A A Sbjct: 81 LVADAKVALSPIAAA 95 >gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum sp. MED92] gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum sp. MED92] Length = 449 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 36/304 (11%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 A +IAITGS K+T ++ + G +IG P L + P + D + E Sbjct: 109 APVIAITGSNAKSTVTTLVGEMAEAAGINVGVCG----NIGTPVLEMLEQP-EKDLYVIE 163 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L T+ +R +A + I+P H+ + +++ AK IF G + + +N Sbjct: 164 LSSFQLE----TTNDLRAEVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAK---NVVVN 216 Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 DDS L A G+K T + GK D +L + W+ + L Sbjct: 217 RDDS----LTAPLLPQGVKQTAFHLGKP---DLKLFGLIEDQGDVWLALGLDKLIAASEL 269 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342 G H N L L + +D + AL F G R+RC A +QG T Sbjct: 270 KMRGRHNLANALAALALGQAAGLPMDAMLNALRGFT-----GLRHRCEWVAEHQG-VTYF 323 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++S N + AA++ L G + GD G+ ++ ++LAE L Y + Sbjct: 324 NDSKGTNVGATVAALNGLGGTLSEENGIVLIAGGD----GKGAE--FVELAEPLRNYGRA 377 Query: 403 HVWL 406 V++ Sbjct: 378 LVYI 381 >gi|319401048|gb|EFV89267.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus epidermidis FRI909] Length = 437 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ A + ++K G I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD + L +Y +G + D + + + + +V +QG+ + Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + +V+ +AL F + R + + NQ L+ Sbjct: 255 FLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + E LS++ + L Sbjct: 311 DD-YAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. TM1040] gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. TM1040] Length = 467 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 9/124 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +IA+TGS GK+TT +L L + + G +IG + PVD + EL Sbjct: 122 VIAVTGSNGKSTTVALLHHILEHVGRNSQMAG----NIGRGVLDIDPPVDGGVVVLELSS 177 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYD 228 R LT P +AV T + P HL +G+ +AK +F EG I ++ D Sbjct: 178 YQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGVDED 233 Query: 229 DSFF 232 + F Sbjct: 234 EGLF 237 >gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] Length = 488 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 25/226 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR + F A G H DG +I AVQ GA VV + + V Sbjct: 14 ITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQVSNLAVQ 73 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-H 146 D+ + +A SK T+I +TG+ GKT+ + + L+ + K A +G+ N Sbjct: 74 DLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKTAVLGTIGNGF 133 Query: 147 IGVPLTLARMPVDV---------------DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 +G A D D E+ L + R + V +AV+T Sbjct: 134 LGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRV--NGVAFDVAVLTN 191 Query: 192 IAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELL 235 ++ HL +E A+AK ++F EGL T +N DD+F + L Sbjct: 192 LSRDHLDYHETMEAYAAAKQKLFAWEGLI---TAIVNTDDAFGKSL 234 >gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula DSM 2008] gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula DSM 2008] Length = 456 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 33/217 (15%) Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 MP D F + EL L I+ RP A++ I P HL+ +E +AK IFE Sbjct: 154 MPAD-GFLVAELSSYQLETIKHF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFE 208 Query: 216 GLEKTGTIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQ 265 T + LN DD + +A SH L I Y+ GK A + K+ Sbjct: 209 NQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGKCYIAKDGVAKFVI 268 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E H G H +N+L + + L V+T + +S FH E Sbjct: 269 ADEDI---------------HIPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEH 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 R +R + F+ ++S N S+ A+ Q Sbjct: 314 RLERVKTIDGITFY---NDSKATNVDSVVKALESFDQ 347 >gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 3655] gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae PittAA] gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 6P18H1] gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 3655] gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae PittAA] gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus influenzae 6P18H1] Length = 437 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 87/401 (21%), Positives = 158/401 (39%), Gaps = 74/401 (18%) Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124 ++ +DM+ L++ + VL A + + + R +K I+ ITGS GK+T Sbjct: 63 LLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKP-IVGITGSNGKST--- 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + T+ K +G N IG+P L+ + D + + EL L T+ ++ Sbjct: 119 VTTLVYEMAKAAGVKVGMGGN-IGIP-ALSLLNEDCELYVLELSSFQLET----TYSLKA 172 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A I + H+ + +E+ AK I+ K G LN +D Sbjct: 173 AAATILNVTEDHMDRYMDLEDYRQAKLRIYHN-AKVGV--LNNEDRL------------- 216 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----------IGYHMAQ 294 +FG+++N + + S W++ + GK +V +G H Sbjct: 217 ----TFGENENQAKHTVSFAENSADYWLKTE-NGKQYLMVKDEVILPCEEATLVGRHNYM 271 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L + + ++D+ AL F +G R++ A I++S N S Sbjct: 272 NILAATALAQAIGINLDSIRAALRHF---KGLDHRFQLAHQANGIRWINDSKATNVGSTV 328 Query: 355 AAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AA++ L + EG+ +LG + E+ EL HI + + L+ Sbjct: 329 AALAGL-----YIEGKLHLLLGGDGKGANFSELAELINQPHI----ICYCFGRDGALLAK 379 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 F S + ETM+ F++ +L GD+V++ Sbjct: 380 F-----------SSQSYLFETMEQAIEFLRPTLQSGDMVLL 409 >gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] Length = 483 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 86/381 (22%), Positives = 146/381 (38%), Gaps = 54/381 (14%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD--MVASIGSLSI 83 + G+ DSR I P + F A G DG FI +AV GA V + + + S+ Sbjct: 19 LITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAVAYDPADFPLNCVLPESV 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V ++ L +A I +TG+ GKTT L A + + A IG Sbjct: 79 PCIPVPELSTQLPNIAKQFYDNPACFLNITGVTGTNGKTTIAYQLAQAHHLLGQKAAYIG 138 Query: 142 S-----------YNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + +N L L ++ D+ E+ L + R + + Sbjct: 139 TIGQGNVNELRLVDNTTPDSLCLQKLLHQYKSQDMRQVCMEVSSHALAQHR--VDALEFN 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL +E A AK+ +F E +N DD++ +++ A K Sbjct: 197 QAIFTNLTLDHLDYHHSMENYARAKSLLF-ARESLEWAIINQDDAYHKIMAAAIKPQVKK 255 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ-------NMLM 298 Y G ++ D + + W + + G +E VH G H + N+ Sbjct: 256 LTY--GIHQDCDVRAKNW---------SMDIYGTEIE-VHSPWGKHHIKIKSLGQFNIYN 303 Query: 299 TLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L I S L A + + ++ GR + + + L+D Y P +++ Sbjct: 304 SLAIFSSLLAANYIPEQVVDVMAQLKAAPGRME----IVAHSPYVLVD--YAHTPDALEN 357 Query: 356 AISVLSQISPHGEGRRIAVLG 376 A+ L+Q+ +GR V G Sbjct: 358 ALMTLNQLK---KGRLWVVFG 375 >gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 52/380 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+ +DSR++AP +AF AI G G F+ A GA V+ + L +PV Sbjct: 22 VSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEP---PAPDGLPVPVD 78 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + VLG +L V A R ++ +TG+ GKT+T ++L AL+ + +G Sbjct: 79 AI-AVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137 Query: 142 S-----YNNHIG----VPLTL---ARMPVDVDFGIFELGM---SH-LGEIRFLTHLVRPH 185 + Y + PL L A + D G + M SH L + R V Sbjct: 138 TLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGR--VDAVHFD 195 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV T + HL + + +AKA++F GL+ +N DD F L A + Sbjct: 196 VAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAA---VVNLDDGFGRTLFASRDPV- 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSW----MEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G S A Q + + +QG+ V +G N+L Sbjct: 252 ---LRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308 Query: 300 LG---IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 G + I A + T + L H G+ R G L+ Y P +++ A Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIH-----GRMNRLGGAHG-APLVVVDYAHTPDALEQA 362 Query: 357 ISVLSQISPHGEGRRIAVLG 376 +S L H + R I V G Sbjct: 363 LSSLRS---HAQDRLICVFG 379 >gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae T7901] gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae T7901] Length = 473 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 79/365 (21%), Positives = 151/365 (41%), Gaps = 40/365 (10%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IA+ G+ GKTTT ++ +I K IG N G L + + Sbjct: 118 IAVAGTHGKTTTTSLIASIFAEGDKDPTFVIGGLLNSAGTNAALGA-------SRYLVAE 170 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 + + FL HL +P +AV+T I H+ + G + E L G + D Sbjct: 171 ADESDASFL-HL-QPMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPFYGVAVMCGD 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHG 287 D L +T+ ++G S++ DF+ KQ S + +++ +G+ +++ + Sbjct: 229 DPVITSLIPDI----ARTVITYGFSEDCDFKAYDVKQESGKQRFKIKRPEGEPLDIYLNM 284 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N + + + D D AI + L+ F G G+R++ L QG ++ Sbjct: 285 PGQHNVLNATAAVAVATDEGID-DIAIQQGLAQFM---GVGRRFQIYGDYPLPQGGSVML 340 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400 + Y +P + A I + P RR+ ++ ++ + D EVLS + Sbjct: 341 VDDYGHHPREVAATIRAVRDSWPD---RRLFMVYQPHRYTR-TRDLYEDFVEVLSSVDQL 396 Query: 401 -ISHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451 + V+ +G + D L R+I + E ++G+ ++ + GD+++ + Sbjct: 397 VLLEVYAAGEEPIPGADGRHLSRTIRTRGLVDPIFVEGIEGVPAVVKDLVKPGDIIITQG 456 Query: 452 SNSCG 456 + + G Sbjct: 457 AGNVG 461 >gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella drancourtii LLAP12] gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella drancourtii LLAP12] Length = 444 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 21/208 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPV--F 86 ++ D+R AP A F + P D ++ H + G + TD++AS G SL P+ + Sbjct: 30 VAFDTRPQAPNLAEFTAEFP--DVTVYVQHVPEDVLGQL---TDIIASPGLSLDTPLLQY 84 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + + AR A +IAITG+ GK+T ++ + A G + Sbjct: 85 ALHAGISVYGDIECLAR-EIHAPVIAITGTNGKSTVTTLVGEMAKAAGYNVAVAG----N 139 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+P L + D + EL L LT + P +A I ++P HL ++ Sbjct: 140 IGMPVLDMLEDEHQYDLWVLELSSFQLD----LTSSLAPVVATILNVSPDHLDRHHSMDA 195 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFE 233 AK ++ + + N DD++ E Sbjct: 196 YIRAKQRVYHHAQ---VVLFNRDDAYTE 220 >gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax borkumensis SK2] gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax borkumensis SK2] Length = 441 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 41/315 (13%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 ++V+ + S +++ V +V+G + A AA ++AITGS K+T +T Sbjct: 70 LIVSPGVAVSTPAIAEQVVDGKEVIGDIELFARAA----SEPLVAITGSNAKST----VT 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L + ++GVP L + + EL L T+ + +A Sbjct: 122 TLLGQVADACGMNPGIGGNLGVP-ALELLDDQARLYVLELSSFQLET----TYSLSAEVA 176 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + ++ HL ++ + +AK +++G + N DD L + A + I Sbjct: 177 TVLNVSQDHLDRYASFADYLAAKQRVYDGCQ---VAVWNRDD-----LATRPPATVARQI 228 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLGIVSI 305 SFG AD++L SE ++ +G+ + + G+H A N+L L I Sbjct: 229 -SFGAHPEADYRLD-----SENG--QLLCRGEPLLSLSELALTGHHNAMNILSVLAISDA 280 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQI 363 L+ + D A+ + F G +RC L G ++S N + A ++ L+ I Sbjct: 281 LSLNRDKALATVKTFT-----GLPHRCQLVAESGGVRWFNDSKATN---VGATLAALTGI 332 Query: 364 SPHGEGRRIAVLGDM 378 EG+ I V G + Sbjct: 333 GESIEGKVILVAGGL 347 >gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter marianensis DSM 12885] gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter marianensis DSM 12885] Length = 564 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 26/139 (18%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-------NHIGVPL--TLAR 155 R +A +I +TGS GKTTT ++ +++ A G +IG PL + R Sbjct: 191 RCRAKVIGVTGSAGKTTTTSLIG---EGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVDR 247 Query: 156 MPVD----VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 +P + ++ F+L + H P +AV + P HL +E A+AK+ Sbjct: 248 IPPEALVVLELSSFQLELCHRA----------PQVAVYLNLRPNHLDVHGSMEAYAAAKS 297 Query: 212 EIFEGLEKTGTIFLNYDDS 230 I G LN DD Sbjct: 298 RIVALQAAEGWAVLNGDDP 316 >gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter denitrificans OCh 114] gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter denitrificans OCh 114] Length = 464 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 27/141 (19%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A + ++A+TGS GK+TT ++ L H+G P TLA ++ Sbjct: 114 ANFDTAPRVVAVTGSNGKSTTSALIHHIL--------------EHVGRPATLAG---NIG 156 Query: 162 FGIFELGMSHLGEI------RFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAE 212 G+ ++ H GE+ + T L R P +AV T ++ HL G+ +AK Sbjct: 157 RGVLDIDPPHDGEVVVLELSSYQTDLARSLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRR 216 Query: 213 IF-EGLEKTGTIFLNYDDSFF 232 +F EG + ++ D+ F Sbjct: 217 LFAEGGPDRAIVGVDEDEGLF 237 >gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis HTCC2503] gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis HTCC2503] Length = 473 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 136/358 (37%), Gaps = 45/358 (12%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 + + G+ GKTTT M+ L + + T G NN+ + AR P D+ + E Sbjct: 120 VCVAGTHGKTTTTSMIGSLLDAGDLDPTVINGGIINNY----ASNAR-PGTGDWMVVEAD 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S IR + VIT I P HL ++ + +A + L G + D Sbjct: 175 ESDGTFIRLPAT-----VGVITNIDPEHLDHYGDFAGVRAAFDQFVANLPFYGFAAVCLD 229 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--------VQLQGKS 280 + L + + + + ++G + AD + E S + V+L+G + Sbjct: 230 HPEVQALVGR---VTDRRLITYGFNPQADVRAENLDPTEEGSRFDIIFRKDDIVRLEGIT 286 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFF 339 + + G H N L + + D + F RG R R + + Sbjct: 287 LPMP----GRHNVLNALAAAIVAREMGVPEDAIRDGFARF-----RGVRRRFTEVGKYRG 337 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSF-----HIDL 392 I + Y +P + A +S ++ GR IAV+ + +L +F DL Sbjct: 338 ARIIDDYGHHPVEIAATLSAARTVA---RGRVIAVMQPHRYTRLQQLFDAFCGCFNDADL 394 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448 V +Y + + G AL D + R H V E GL ++ L DGDVV+ Sbjct: 395 VMVGDVYPAGEMPIEGMDKRALADGIARHGHRGVEVIEAWGGLSQRLRDELQDGDVVI 452 >gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii NCIMB 8052] gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii NCIMB 8052] Length = 459 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 79/361 (21%), Positives = 145/361 (40%), Gaps = 53/361 (14%) Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +AI+G+ GKTT ML+ I L+ P L +D G F +G Sbjct: 114 VAISGTHGKTTCTSMLSHITLADNLD--------------PTILVGGELDAIGGNFRIGN 159 Query: 170 SHLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S FLT P++ +I I HL + I+EIA + + + Sbjct: 160 SEY----FLTEACEYKRSFLKFPPYVGIILNIDSDHLDYYKDIDEIADTFLQFSRLIPED 215 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGK 279 G + DD + ++++ S+G S NA+ + + + +V G Sbjct: 216 GYLVGYADDQRVNEILSETNC----NTLSYGFSDNANLTAKNIHFNTNGCATFDVYKDGN 271 Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 ++ + + G H N L ++ + I D I+ LS +G KR+ Sbjct: 272 NLFNITLNVPGKHNILNALASICVSLIFNISNDCIIEGLS---NCKGAHKRFEYKGKLNG 328 Query: 339 FTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID+ Y +P +KA +S Q++ PH R A+ + E + + Sbjct: 329 VTVIDD-YAHHPTEIKATLSTAKQMNHNKTYCIFQPHTYTRTKALFDEFTEC--FNDADE 385 Query: 390 IDLAEVLSLYNISHVWLSGFHV-LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + L ++ + + +S + AL++ + I+VH + D +++S LV GD+++ Sbjct: 386 LILMDIYAAREKNTGLVSSDELGDALRNKGLKCINVH---SHDEALNYVKSKLVSGDLLL 442 Query: 449 V 449 Sbjct: 443 T 443 >gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 412 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 21/172 (12%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 K II+ITG+ GK+TT ++ L KT+ IG + G+P + A D + Sbjct: 79 KGKIISITGTNGKSTTTALIYQVLKEAGYKTF--IGG---NFGIPFSSFAEETTDDSITV 133 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL + +++ R I++I I P H++ + EE AK ++ L + Sbjct: 134 LELSSFQIEDLKDF----RSSISIILNITPDHMNRYKSFEEYVKAKLKL---LGHSEFCI 186 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 LN DD L + + F + + AD K K + +EV+L Sbjct: 187 LNQDDPVL-------RNLNRENFFFFSRKRKADAFFEKGKIFCKDFKIEVEL 231 >gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 525 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 20/155 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 L+T D L A G ++ + G V ++ DSR P + F A G G F Sbjct: 10 LFTQLDALAAAVGATVDVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFA 69 Query: 58 LHAVQKGAGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSK 107 AV+ GA V+ + + +G S+PV VDD A+ K A AA L S Sbjct: 70 ASAVEAGANAVLTDAQGRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDS- 128 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 A+TG+ GKTTT M+ L ++ + IG+ Sbjct: 129 ---YAVTGTNGKTTTAYMVESILGALGRKPGLIGT 160 >gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145] gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145] Length = 482 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 50/382 (13%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 KGA ++VV+T + + + IPV ++LG L R R IA+ G+ Sbjct: 80 KGANVIVVSTAIDKENPEIKTAIENRIPVVRRAEMLGEL------MRYRHG---IAVAGT 130 Query: 117 VGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTTT ++T L+ ++ TY IG N G+ L + + + + Sbjct: 131 HGKTTTTSLITCMLAEENMDPTY-VIGGLLNRTGMNAALG-------ASRYIVAEADESD 182 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 FL HL P AV+T I H+ + G + + + + L G + DD+ Sbjct: 183 ASFL-HL-EPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGLAVVCGDDANIR 240 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHM 292 + + + + ++G +++ D + Q Q+ V + + + + V + G H Sbjct: 241 EIMPRI----ARPLLTYGFNEDNDIRAVDVDQDGMQTHFTVLRKEREPLRVTVNQPGLHN 296 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLIDESYNA 348 N L +GI + + +AL F G G+R+ A+ G L+D+ Y Sbjct: 297 VLNALAAIGIATDEGVSDASICRALEGF---SGVGRRFEVQGEFAIEGGDVKLVDD-YGH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405 +P ++A I Q P RR+ ++ F D EVLS + + V+ Sbjct: 353 HPKEVEATIKAARQSHPD---RRLVMMFQPHRYSRTRDCFD-DFVEVLSTVDQLLLLDVY 408 Query: 406 LSGFHVLALKD--ALPRSIHVH 425 +G + D +L RSI + Sbjct: 409 PAGEKPIVGADSRSLARSIRLR 430 >gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 458 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 45/262 (17%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +AI GS GKTTT + +A + + T A +G N G L R D+ + E Sbjct: 111 VAIAGSHGKTTTTSLAAHLLAHAGLDPT-AVVGGKVNTFGSNAKLGRG----DYMVVEAD 165 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + FL + P IA++T I P HL ++ E + + + G L D Sbjct: 166 ES---DGSFLH--IPPTIAIVTNIDPEHLDHWKTEEALRKGFLDFVNRVPFYGRAILCID 220 Query: 229 DSFFELLKAKSHALGIKTIY-SFGKSKNADF------------QLRKWKQCSEQSWMEVQ 275 + L + +++ Y ++G+S AD+ + +++ EV+ Sbjct: 221 HPTVQSLLPE-----VESRYVTYGESHQADYRADGIEVSGHAVRFDAFRRDEPLGRFEVR 275 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 L +G H A N L + I + D +AL+ F G +R+ Sbjct: 276 L-----------VGRHNALNALAVVAIADEMGVPADVTREALASFG---GVQRRFTVRGE 321 Query: 336 QGFFTLIDESYNANPASMKAAI 357 G T++D+ Y +PA +KA + Sbjct: 322 AGGVTVVDD-YGHHPAEVKATL 342 >gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822] gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822] Length = 498 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 84/391 (21%), Positives = 148/391 (37%), Gaps = 72/391 (18%) Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+F DVL AL K + IA+ G+ GKTTT ++ L Sbjct: 134 PIFHRSDVLAALIKDYYS---------IAVAGTHGKTTTSSLIGYMLLKAGLD------- 177 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV----------RPHIAVITTIA 193 P + VD G + LG+ RFL P I ++T I Sbjct: 178 ------PTIIVGGEVDA-----WQGNARLGQGRFLVAEADESDGSLAKHSPRIGIVTNIE 226 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 H ++ +EE+ + F+ E+ + D E ++ + L + YS Sbjct: 227 LDHPDHYQNLEEV----IQTFQIFERQCETLIACIDC--ETVRQR---LNPQITYSLDPE 277 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYHMAQNMLMTLGIVSILTADVDT 312 K AD+ ++ ++ S +EV +G+ + ++ +G H N L + + L D + Sbjct: 278 KEADYTVKNVVYHAQGSLVEVWERGQYLGQMNISLLGQHNVSNSLAAVAVGRKLGLDFEE 337 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS-------------V 359 A++ F EG +R+ + T ID+ Y +P+ ++ + V Sbjct: 338 IAVAVATF---EGAKRRFEHKGHCNGITFIDD-YAHHPSEIRCTLEAARLRSHQDCYSRV 393 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ PH R M E + SF D+ + +Y+ V L + DA+ Sbjct: 394 VAIFQPHRYSRTATF------MDEFATSFSDADVVIITDIYSAGEVNLGQMSGQQVADAI 447 Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V+Y ++ L F+ L GD+ + Sbjct: 448 SCYHKQVYYHPSLKSLGSFLVEILQPGDLAL 478 >gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus acidilactici DSM 20284] gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus acidilactici DSM 20284] Length = 464 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + +I +TGS GKTT M+ + L A + +IGVP T+ + D + E Sbjct: 116 SELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTVVQKATANDRVVME 172 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L I L PHIAV+ I HL E + K I E K +N Sbjct: 173 LSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVIN 228 Query: 227 YDDSFFELLKAKSHA 241 +D+ ++ L ++ A Sbjct: 229 WDNPEWQQLAQRTAA 243 >gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 452 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ I+ ITGS GKTTT M+ L++ ++ G +IG P + + + Sbjct: 106 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASEVVQKASAN 161 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L I +PHIAVIT + P HL E+ +AK I + Sbjct: 162 DTLVMELSSFQLMGIDAF----KPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAD 217 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN + L + A Sbjct: 218 DYLILNANQEISAALAKTTKA 238 >gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus str. MIT 9215] gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus str. MIT 9215] Length = 478 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 42/224 (18%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V+G +N VA + I ITG+ GKTT +L+ L + +IG P Sbjct: 106 VIGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHILCDT----GLYAPFAGNIGTP 158 Query: 151 L---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 L ++ +D+ + EL + ++ V+P+I + TT HL +E Sbjct: 159 LCKYAYSKKTEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 214 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSKNADFQLRKW 263 + K + LEK+ NYDD ++H + G+ SF KS + Sbjct: 215 NIKKSL---LEKSDFRIYNYDDK-----NLRNHYSSLSRGVWITTSFDKS--------NF 258 Query: 264 KQCSEQSWMEVQL----QGKSMEVVHHG--IGYHMAQNMLMTLG 301 QC W++ Q +GK + + H G H QN+L+ + Sbjct: 259 IQC--DYWIDDQAFIVERGKKLFKLEHFSLKGMHNLQNLLLVIA 300 >gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1] gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1] Length = 482 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT +L A + T+ IG LT A + + + Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H++ + G ++ E L G + Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD + + + ++G S+ AD + +Q Q+ V + + +EV + Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSVN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + + ++ LS F +G G+R++ + G L+ Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P + A I + P RR+ ++ ++ + D +VL N+ Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWP---SRRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396 Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451 V+ +G + D+ + +D +++ ++ L GD+++ + Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGVELAPLVKPLLRAGDILICQG 456 Query: 452 SNSCG 456 + G Sbjct: 457 AGDVG 461 >gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus megaterium QM B1551] gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus megaterium QM B1551] Length = 449 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 29/262 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164 S+A I ITGS GKTTT ++ L +K G +IG V +A+ + + Sbjct: 109 SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAG----NIGTVACEVAQKATKDNVIV 164 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L I RP I+++ + AHL EE AKA +F Sbjct: 165 TELSSFQLMGIEKF----RPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDFAV 220 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKS 280 +N DD ++KA + K +S ++ +K S +V L GK Sbjct: 221 INADDEL--VMKASADVKATKVPFSVTAQTTEGAYIKNETIFFKDEEVMSLKDVVLPGK- 277 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 H +N+L + +V + + + L+ F + R +Y +N+ F Sbjct: 278 ----------HNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHRV-QYVTTINKRKF- 325 Query: 341 LIDESYNANPASMKAAISVLSQ 362 ++S N + K A+S SQ Sbjct: 326 -YNDSKATNMLATKVALSAFSQ 346 >gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 495 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 107/466 (22%), Positives = 173/466 (37%), Gaps = 68/466 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+ +DSR +AP +AF AI G G F+ A GAG V+ + + +P Sbjct: 22 VCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEP---PAPNGMPVPAD 78 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V G +L V A R ++ +TG+ GKT+T ++L AL+ + +G Sbjct: 79 AI-AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR-----FLTHLVRPH----------- 185 + +GV L A +P + + L ++R + V H Sbjct: 138 T----LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 186 --IAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYDDSF----FELLKA 237 +AV T + HL + + +AKA++F GL+ +N DD+F F L Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAA---VVNLDDAFGRTLFASLDP 250 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A+G+ S +A + + + +QG+ V +G N+L Sbjct: 251 ALRAIGV----SSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLL 306 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 G + L L P GR R A L+ Y P +++ A+ Sbjct: 307 AVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGA---PLVVVDYAHTPDALEQAL 363 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 S L H + R I V G C GE +A + L V + D Sbjct: 364 SSLRS---HAQDRLICVFG--CG-GERDTGKRPQMAAIAELNA---------DVAIVTDD 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 PR SE D + I D +V+ + ++ I + Sbjct: 409 NPR------SEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGM 448 >gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] Length = 519 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 105/392 (26%), Positives = 156/392 (39%), Gaps = 73/392 (18%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIGSLS 82 I+ DSR + P FFA G + FI A+ GA LVV D V ++ SL Sbjct: 34 ITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAVLVVTEADYADPRVIRVEAVHSLV 93 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIG 141 + + G V A TII ITG+ GKT+ + + ALS + A IG Sbjct: 94 LQMVG-----------HVCAVNFDDLTIIGITGTNGKTSVAQFIAGALSRSGAPHTASIG 142 Query: 142 -------------------SYNNHIGVPLTLARMPVD-----VDFGIFELGMSHLGEIRF 177 + N G+ TL R VD + + E+ L + R Sbjct: 143 MIGTLGAGMWSSGLENLQPTANTTPGLLETL-RYAVDFIRQGARYVVMEVSSHALEQNRL 201 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLNYD----DSF 231 +R +AV T ++ HL + E +AK ++F GL + G I N+D D Sbjct: 202 QGLPIR--LAVFTNLSRDHLDYHGTMAEYFAAKTKLFAWPGL-RAGII--NFDEAQADVL 256 Query: 232 FELLKAKSHALGIKTIYSFGKS--KNADFQ-LRKWKQCSEQSWMEVQLQGKSMEVVHHG- 287 FE L A + Y G + AD Q +R + + +++Q++ E Sbjct: 257 FEALGATADCWA----YGLGDPDWRVADCQHVRVTSITALPNGIDIQVRTPLGEARLQPS 312 Query: 288 -IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N++ L V L ++TAIKAL P GR + L G L+D Y Sbjct: 313 LVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQMI--TLPSGARALVD--Y 368 Query: 347 NANPASMKAAISVLSQISPHGE--GRRIAVLG 376 P ++ VL + H + G+ I V G Sbjct: 369 AHTPDALD---QVLRALRDHRDAAGKIICVFG 397 >gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio fischeri ES114] gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri ES114] Length = 404 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 62/362 (17%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A +IAITGS GK+T + LT ++ +G +IG L + D + + E Sbjct: 71 NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 125 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L T ++ A ++ H+ + G+ + AK IFE E +N Sbjct: 126 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 178 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD +++ KT+ SFG + D+ C E+ +E L ++ ++ Sbjct: 179 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKNTVPLLAA 223 Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339 +G H N L+ + ++ ++D + L ++ G +RC A N G Sbjct: 224 NELGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 277 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396 +++S N AS AA+S L EG+ + +G + ELS + H DL L Sbjct: 278 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 329 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 +Y G ++L PRS+ ETM+ + +L GD+V++ S +C Sbjct: 330 MMYCFGE---DGDQFVSLD---PRSL---LCETMNEAIATLYPTLNKGDMVML--SPACA 378 Query: 457 FY 458 + Sbjct: 379 SF 380 >gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] Length = 487 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 90/400 (22%), Positives = 157/400 (39%), Gaps = 47/400 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR I P + F A +G + DGH FI A+ +GA V V + + + Sbjct: 27 IHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRGA--VAVVCEQLPENRPEEVTYIWTA 84 Query: 90 DVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL +A + ++ +TG+ GKTTT +L + + + + N+I Sbjct: 85 DTSEALGVMAGNYWDNPSRELKLVGVTGTNGKTTTATLLYELVRLAGEKAGLLSTVCNYI 144 Query: 148 G---VPLT------------LARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVI 189 G +P T L RM VD G F SH + + L A+ Sbjct: 145 GEEKIPATHTTPDALSIQELLRRM---VDAGCRYCFMEASSHAIHQKRIAGLDFDG-AIF 200 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHALGIKTI 247 + I HL + AK F+ L N DD L ++H Sbjct: 201 SNITHDHLDYHKTFKAYIEAKKAFFDRLPAHAFALTNADDKNGLVMLQNTRAHR------ 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y++ ADF + ++ + + + +L G+ EV G A N+L +L Sbjct: 255 YTYSCRTMADFTAKAIEKHLDGTLL--RLDGE--EVWTKFTGDFNAYNLLAVYAAARLLG 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ +S+ P GR + +G ++D Y P +++ +S + + Sbjct: 311 FPKENVLEYVSLLVPVSGRFE--TLISTEGVMAVVD--YAHTPDAVENVLSTICGL---- 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 +GR V+ + G+ ++ ++A+ Y+ HV L+ Sbjct: 363 KGRDNQVITVVGAGGDRDKTKRPEMADAACRYS-DHVILT 401 >gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo] gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1] gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo] gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1] Length = 468 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 27/185 (14%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139 L+IP+ +VLG L++ K + I GS GKTTT L + + + Sbjct: 96 LNIPILSYSEVLGELSR---------KYYSVGIAGSHGKTTTTAFLGLLFNKLGLNPNVI 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197 +GS G +A GI + ++ E + H + P++ ++T I H+ Sbjct: 147 VGSSVKDFGDNSAIA--------GISNIFIAETCEYK--KHFLHFSPNMLILTNIDYEHV 196 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKN 255 F E + A + L+K G + +N DD+ LLK K + K I+SFG Sbjct: 197 DFFENYEALEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQ-INRKDINIFSFGSKDL 253 Query: 256 ADFQL 260 ++FQ+ Sbjct: 254 SNFQI 258 >gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 468 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 145/383 (37%), Gaps = 70/383 (18%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VV ++ + VA + IPV ++L L +L IAI G Sbjct: 63 EGAEVVVTSSAIDSRNPEVAEAHANHIPVIQRAEMLAELMRLKYG---------IAIAGM 113 Query: 117 VGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 GKTTT M+ L+ + +GS N +G L + D +L Sbjct: 114 HGKTTTTSMVAAVLAGGELDPTVIVGGRVDAMGS-NARLGKSHYLVAEADESDRSFLKLW 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H AV+T I H+ + +E++ E + + G + D Sbjct: 173 FIH---------------AVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVVACND 217 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ------SWMEVQLQGKSM- 281 + + + + I ++G ++ +DF +R SEQ + V+ +GKS+ Sbjct: 218 NEPLRAILPRVR----RRIVTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVEYRGKSLG 273 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E + G H +N + I L D AL+ F G +R++ ++ Sbjct: 274 EFLLRVPGLHNVRNATAAIAIGVGLDIPADKIRAALAEFR---GVDRRFQLKGKANDISV 330 Query: 342 IDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSF-HID 391 ID+ Y +P ++A ++ Q PH R D+ M E + SF D Sbjct: 331 IDD-YGHHPTEIRATLAAAKQCGFRHIHVVFQPH----RYTRTRDL--MDEFASSFGDAD 383 Query: 392 LAEVLSLYNISHVWLSGFHVLAL 414 +L +Y S + G + AL Sbjct: 384 SLYLLDIYPASEQPIEGVNTEAL 406 >gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium glomerans PW2] gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium glomerans PW2] Length = 470 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+TG+ GKTTT + LS+ + +G+ ++ D D+ + EL Sbjct: 113 IAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGE---TAISQVDRRQDGDWFVAELSSY 169 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L T P AV+ I P HL G E A AK +I + L++ ++ DD Sbjct: 170 QLA----TTSEFHPRAAVLLNITPDHLRWHRGFENYARAKLKILQNLDENDLAIIDVDDP 225 Query: 231 FFELLKAK 238 L ++ Sbjct: 226 GLRRLGSQ 233 >gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 516 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 3 PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 P DL QA+ G H G G V G ID+R++ E F A+ G H G F A Sbjct: 18 PWVEVTDLAQAVGGTVHGDG----GSVRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADA 73 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 +GAG V+ + + +A + L IP V DV + A A Sbjct: 74 ASRGAGAVLSDPEGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115 >gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 456 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDV 160 A L S++ I+ ITGS GKTTT M+ L++ ++ G +IG P + + + Sbjct: 110 AYLVSESPIVGITGSNGKTTTTTMIADVLNAGGQSALLSG----NIGYPASEVVQKASAN 165 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L + +PHIAVIT + P HL E+ +AK I + Sbjct: 166 DTLVMELSSFQLMGVDAF----KPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTAD 221 Query: 221 GTIFLNYDDSFFELLKAKSHA 241 + LN + L + A Sbjct: 222 DYLILNANQEISAALAKTTKA 242 >gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. holarctica FSC022] gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. holarctica FSC022] Length = 451 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 33/287 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74 V GI + + +IA + G H G+D + L A + G+V V N D+ Sbjct: 10 VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPNGVDVANFDI 64 Query: 75 VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V ++ S P+ LG L + + +A ++ + +AITG+ GKTTT +L Sbjct: 65 VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188 L + K + I +G + A + V+ G +L + + + FL + P + + Sbjct: 125 LCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLSPQVVI 175 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I H++ ++ + F E +I+L DD L AK + K + Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSDKNVT 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S+G S NAD Q+ + E + +++ +G + G + QN Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQN 281 >gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] Length = 485 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 152/380 (40%), Gaps = 54/380 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR + P + FFA+ G DG FI AV GA +V + + +P Sbjct: 22 VTGVALDSRVVRPGDLFFALAGSKTDGARFIDAAVAAGAVAIVGDH----APDGCKVPFI 77 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEML-----------TIALS 131 V + AL A ATI A+TG+ GKT+ T+++ TI L Sbjct: 78 AVANPRRALALAAARFFPAQPATIAAVTGTSGKTSVAAFTRQIWERLGHASASIGTIGLV 137 Query: 132 SIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL-------GEIRFLTHLVR 183 S K+T Y + + + P+ L R + I G++HL G ++ VR Sbjct: 138 SPKRTVYGSLTTPD-----PIALHRQMDE----IAREGVTHLAFEASSHGLDQYRLDGVR 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG---TIFLNYDDSFFELLKAKSH 240 T ++ H+ + +AK +F L G I ++D S + AK+ Sbjct: 189 VSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVPPGGAAVISADHDCSAEAIDAAKAR 248 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + + G +L + + V+ +GK V+ G +N L++ Sbjct: 249 GLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEHRGKRYVVLLPLAGEFQVENALVSA 308 Query: 301 GIVSILTADVDTAIKALSVF----HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 G+ + T A +VF H + +G+ R G +D Y P ++ A Sbjct: 309 GLA------IGTGSDAANVFASLEHLEGAKGRLERVGERNGAPIFVD--YAHKPDALAKA 360 Query: 357 ISVLSQISPHGEGRRIAVLG 376 + L P+ + R + V G Sbjct: 361 LQAL---RPYAKRRLVVVFG 377 >gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469] gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469] Length = 489 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 58/296 (19%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS-------- 132 LSIP++ +L L+ R + TI A+ G+ GKTTT M+ L Sbjct: 112 LSIPIWPRAKMLSYLS--------RGRKTI-AVAGTHGKTTTSSMIATMLDKLGADPSFL 162 Query: 133 ---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + Y G N + + E S G FL P + VI Sbjct: 163 IGGVVEGYDTNGKNGNG--------------QYFVCEADESD-GSFMFLN----PSVVVI 203 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIY 248 T I HL ++ +E I + E L+K T+ +N D+ + EL ++ + + Sbjct: 204 TNIEADHLDHYGSLENIENTFCEFMSLLDKEETVVINGDNPHYVELAQSTG-----RHVV 258 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQL-----QGKSMEVV-HHGIGYHMAQNMLMTLGI 302 ++G + DF KQ ++ +E L G+++ VV G H N + + Sbjct: 259 TYGFDPSCDFVC---KQEERKAGIENPLTIKTPSGQTISVVLPANPGKHNVANATAAIAV 315 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L D++ A ALS F +G +R+ + T++D+ Y +P + A +S Sbjct: 316 ADTLNFDLEEAAAALSQF---KGARRRFTHVGDINGITVVDD-YGHHPTEIAATMS 367 >gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis L2-32] gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis L2-32] Length = 479 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 31/175 (17%) Query: 71 NTDMVASIGSLSIPVFGVDD--VLGA-------LNKLAVAARLR-------SKATIIAIT 114 NTDMV ++ PVF +L A ++++ +A +LR A I IT Sbjct: 55 NTDMV-----MTSPVFNPRTPFILEAQKRNIPVMSEVELAWQLRVNSNTTGKPAQWIGIT 109 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 G+ GKT+T EM + L++ +G +IG ++ A + D EL L Sbjct: 110 GTNGKTSTTEMTSEMLTACGLAAPAVG----NIGKAVSHAAVDPANDVLCVELSSFQL-- 163 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 T+ + A IT IA HL GIE A+ KA++F ++K + N DD Sbjct: 164 --HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADD 214 >gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis 1330] gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis ATCC 25840] gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella canis ATCC 23365] gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis ATCC 23457] gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 3 str. Tulya] gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis bv. 5 str. 513] gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis bv. 3 str. 686] gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella neotomae 5K33] gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 3 str. Ether] gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 2 str. 63/9] gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4 str. 40] gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae 5K33] gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5 str. 513] gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3 str. 686] gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 3 str. Ether] gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis 1330] gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC 25840] gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis ATCC 23365] gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella melitensis ATCC 23457] gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4 str. 40] gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae 5K33] gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5 str. 513] gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3 str. 686] gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 3 str. Ether] gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 2 str. 63/9] gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis M28] gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella melitensis M5-90] Length = 467 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2] gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2] Length = 467 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] Length = 494 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 87/383 (22%), Positives = 143/383 (37%), Gaps = 36/383 (9%) Query: 19 IGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 +G+ +G V+ GI++DSR + F A+ G G F A+ GA ++ + Sbjct: 12 LGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAG 71 Query: 75 VASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---- 126 + L ++ + V+D AL + T++A+TG+ GKT+ + Sbjct: 72 AQIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVRQIW 131 Query: 127 ------TIALSSIKKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGMSHLGEI 175 + L + A N+ P+TL V E L + Sbjct: 132 IELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLDQR 191 Query: 176 RFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFE 233 R HL A T HL E +AKA +F L + G +N DD Sbjct: 192 RLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGP 248 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 ++A + A G + + S G+ D L + + M K + + IG A Sbjct: 249 EMRAIAAARG-QEVISVGRGAG-DLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQA 306 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N+L+ G+V D + L GR + + G +D Y P ++ Sbjct: 307 ENILLACGLVIASGEDPQAVFETLPHLQTVRGR-MQLAATRDNGATVFVD--YAHTPDAV 363 Query: 354 KAAISVLSQISPHGEGRRIAVLG 376 AI L PH GR +A++G Sbjct: 364 ATAIKAL---RPHVLGRLVAIVG 383 >gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1] gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1] Length = 473 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 79/345 (22%), Positives = 137/345 (39%), Gaps = 52/345 (15%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSYNNHIGVPLTLARMPV 158 +R K+T+ AI G+ GKTTT M+ L + + T I SY ++ AR+ Sbjct: 105 MRLKSTV-AIAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSN-------ARLGA 156 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D+ + E S +R IAV+T I P HL ++ +++ E E + Sbjct: 157 S-DWMVVEADESDGSFLRL-----DGTIAVVTNIDPEHLDHYGSFDKVKDCFVEFVENVP 210 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G L D + + + + + ++G S AD + + +V ++ Sbjct: 211 FYGAALLCIDHPEVQAIIPRVRD---RKVVTYGFSAQADVRGDNVTPIPGGNRFDVVVRN 267 Query: 279 KSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-- 330 + + G+ G H QN L +G+ L ++ AI A F G +R+ Sbjct: 268 RDGDTRRIEGVTLPMPGRHNVQNALAAIGVA--LEMNISDAIIATG-FAKFGGVKRRFTK 324 Query: 331 --RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379 + G T+ID+ Y +P ++A ++ V++ + PH R L D+ Sbjct: 325 VGEVPVGDGVATVIDD-YGHHPVEIRAVLAAAREGARAKVIAVVQPH----RFTRLRDL- 378 Query: 380 EMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 M E +F+ D V +Y + G AL L + H Sbjct: 379 -MTEFQTAFNDADTVYVAPVYAAGEAPIDGVDAAALVAGLKQRGH 422 >gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] Length = 490 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+ ++++ P + F KG G F+ A+ +GA +V + I IP Sbjct: 23 ITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPIIDKEIPFV 82 Query: 87 GVDDVLGALN--KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V + L+ +AA T+IAITG+ GKTT ++ L+++ K A IG+ Sbjct: 83 WVPNTALFLSYASAKLAAFPAEALTVIAITGTNGKTTVSHFVSQLLNALHKHAAVIGT 140 >gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caldicellulosiruptor bescii DSM 6725] gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor bescii DSM 6725] Length = 457 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 20/200 (10%) Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +KK Y + N IG+P T+ D F + E+ L I++ +P I I Sbjct: 131 LKKQYEDVVVCGN-IGLPFIDTIETSSEDTIF-VLEISSFQLETIKYF----KPKIGCIL 184 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I P HL+ +E AK IFE +++ G LNYD++ L L + F Sbjct: 185 NITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDL----IGLAKGNVIVF 240 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306 K+K F+ + E + +GK+ EV+ G H +N L + Sbjct: 241 SKTK-TQFENVVF---VENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPF 296 Query: 307 TADVDTAIKALSVFHPKEGR 326 + DT + L F E R Sbjct: 297 GIEKDTIEQVLKTFRGVEHR 316 >gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL 07-0026] gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL 07-0026] Length = 467 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149] gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149] Length = 487 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 91/413 (22%), Positives = 165/413 (39%), Gaps = 52/413 (12%) Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DG D +++ A + N +++ ++ IP+ ++LG L + + T I Sbjct: 97 DGIDCVVYT----AAIRRENAELMEAVAK-KIPMLTRAELLGQL--------MANYKTPI 143 Query: 112 AITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 A++G+ GKTTT M++ + L+ +G IG + + GIF Sbjct: 144 AVSGTHGKTTTTSMISHVLLAGDTDPTISVGGILQAIGGNIRVGSS------GIFVTEAC 197 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229 FL P I++I I HL F +E+I + + L GT+ +N + D Sbjct: 198 EYTN-SFLHFF--PKISIILNIEADHLDFFKDLEDIRHSFHQFAALLPSDGTLIINGEID 254 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK-SMEVVHHG 287 + E+ + ++ ++G S D+ + + + + GK +V Sbjct: 255 QYQEICEGLD-----CSVVTYGMSPEFDYSAQNITYDEKGRVAFDFFRNGKLDTHIVLSV 309 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + +L +DT K L F G +R+ T++D+ Y Sbjct: 310 TGDHNVSNALSAIATAELLGLSMDTIQKGLLSF---SGTDRRFEYKGTIDDVTIVDD-YA 365 Query: 348 ANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +P +KA + PH R A + E LS + H+ LA++ + Sbjct: 366 HHPTEIKATLKAAKHYPHRKLWCVFQPHTYTRTKAFFQEFAEA--LSHADHVILADIYAA 423 Query: 399 YNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449 + +S AL DA+ RS+ HY + + F++ + GD+V+ Sbjct: 424 RETDTLGVSS---EALSDAI-RSLGTDSHYFPSFAEIETFLKENWNAGDLVLT 472 >gi|320161737|ref|YP_004174962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea thermophila UNI-1] gi|319995591|dbj|BAJ64362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea thermophila UNI-1] Length = 460 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 25/156 (16%) Query: 110 IIAITGSVGKTTTK----EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----PVDVD 161 +I ITGS GKTTT M + A+ + +K + +IGVPL + R+ P DV Sbjct: 112 VIGITGSAGKTTTTTLVGRMASRAVVAPQKAWV-----GGNIGVPL-IDRLDEIQPADVV 165 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L +++T P +A + I P HL +E +AKA I E T Sbjct: 166 --VLELSSFQL---QWITR--SPQVAAVLNITPNHLDRHGTMEAYTAAKARILEFQSATD 218 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 L +D+ L+ K + SFG + A+ Sbjct: 219 IAVLGREDAGAWGLREKVRG----DLISFGLNHPAE 250 >gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 1 str. 9-941] gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis biovar Abortus 2308] gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus S19] gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus str. 2308 A] gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 6 str. 870] gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 4 str. 292] gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 9 str. C68] gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus NCTC 8038] gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 9 str. C68] gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 5 str. B3196] gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine nucleotide-disulphide oxidoreductase, class I:Folylpolyglutamate s [Brucella melitensis biovar Abortus 2308] gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus S19] gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus str. 2308 A] gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus NCTC 8038] gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 9 str. C68] gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 5 str. B3196] Length = 467 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|330718754|ref|ZP_08313354.1| UDP-N-acetylmuramate--L-alanine ligase [Leuconostoc fallax KCTC 3537] Length = 443 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 29/262 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T IA+ G+ GKT+T +L L +I T +G GVP + F + Sbjct: 101 AQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLVGDGTGR-GVP--------NSRFFVV 151 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E E R P A++T I H ++ I ++ SA ++ ++K IF Sbjct: 152 E-----ADEYRRHFKDYAPDYAILTNIDFDHPDYYTDINDVTSAFSDFANNVKK--AIFA 204 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 DD L K+ IY +G DF + ++ ++ S +V +GK + E Sbjct: 205 WGDDKHLRQLHPKA------DIYYYGVNPTRDDFVAQNIRKSTKGSHFDVTYRGKDLGEF 258 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L + + + D+D + L F G +R+ + T+ID Sbjct: 259 SVPLYGQHSILNALAVIAVAYMEKVDLDLLREYLMTF---TGVKRRF-SEKHIADITVID 314 Query: 344 ESYNANPASMKAAISVLSQISP 365 + Y +P+ + A + Q P Sbjct: 315 D-YAHHPSEIDATLDAARQKYP 335 >gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 453 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+TG+ GK+TT +++ L+S Y G +IGV + R D + EL Sbjct: 107 IAVTGTNGKSTTTALISHILNSNGLDYPVAG----NIGV--SALRAKASKDGYVLELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T IAV+ I P HL + +AK++IF+ ++K +N D+ Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKKSYAVINIDND 216 Query: 231 F 231 + Sbjct: 217 Y 217 >gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR] gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR] Length = 459 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 158/373 (42%), Gaps = 39/373 (10%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGV 149 L L++ V A L ++ IA+ G+ GKTTT M+ + L + + T +G IG Sbjct: 90 LKILHRGDVLAGLMAEKKGIAVAGAHGKTTTTSMIALVLEKNGLDPT-VVVGGELFDIGS 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 L + G + + + + FL + P+I VIT I HL + E+I +A Sbjct: 149 NAKLGK-------GEYLVAEADESDGSFLK--LSPYIEVITNIEDDHLDYYGSTEKIDAA 199 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 E E + G L ++ ++L K K S+G A+++ R Q Sbjct: 200 FQEFTEKIPDEGFCILCFNSPKVKVLADKLK----KPFISYGIGVPAEYEGRNILCQGTQ 255 Query: 270 SWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S ++V + + + + + G H N L L + ++ + AL+ F G G+ Sbjct: 256 SSVDVFYRNEYLGKLRLNVPGEHNLANALAALAVGRLVGLSFEQVADALASF---TGVGR 312 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMC 379 R++ T++D+ Y +P +KA + ++S PH R L Sbjct: 313 RFQLIGQVKGITVVDD-YAHHPTELKATLQAARKAGFARIISVFQPH-RFTRTKFL---- 366 Query: 380 EMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLF 436 + ++FH D+ + +Y+ ++G + D + + + V++ +T + + F Sbjct: 367 -YKQFGEAFHGPDIIIITEIYSAGEKPIAGVSAQLIIDEVKKHTTAPVYFLKTEEDILEF 425 Query: 437 IQSSLVDGDVVVV 449 + ++ GD+V+ Sbjct: 426 LLANTRSGDLVLT 438 >gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc kimchii IMSNU 11154] gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc kimchii IMSNU 11154] Length = 448 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 19/156 (12%) Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 TD+V L+IP+ L ++AVA L + +IA+TGS GKTTT ++ L Sbjct: 84 TDIVKKAQKLNIPI---------LTEVAVALSLFN-GRLIAVTGSNGKTTTTSLIRDMLE 133 Query: 132 SIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S + G +IG P++ + D + + EL L T +RP IA+IT Sbjct: 134 SDGQQVTTAG----NIGTPVSEVVENLTDEETLLLELSSFQL----LGTPDIRPDIALIT 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 I HL + AK +I + T+ LN Sbjct: 186 NIFANHLDYHGSRDNYVEAKFQITKNQTVDQTLVLN 221 >gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus acidilactici 7_4] gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus acidilactici 7_4] Length = 464 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + +I +TGS GKTT M+ + L A + +IGVP T+ + D + E Sbjct: 116 SELIGVTGSNGKTTVTTMIQLMLDQQDHHAAYVAG---NIGVPATTVVQKATANDRVVME 172 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L I L PHIAV+ I HL E + K I E K +N Sbjct: 173 LSSFMLAGIDQL----HPHIAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVIN 228 Query: 227 YDDSFFELLKAKSHA 241 +D+ ++ L ++ A Sbjct: 229 WDNPEWQQLAQRTAA 243 >gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 464 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 71/396 (17%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L+IP+ +LG + ++ IA+ GS GKTTT ++++ L ++ Sbjct: 89 ELNIPIIDRATLLGLI--------MKKYKYGIAVAGSHGKTTTTSLISVILDGMEFD--- 137 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190 P L VDV G +G S F+T P+IAVI Sbjct: 138 ----------PTVLVGGEVDVIGGNVRVGSSEY----FVTEACEYTDSFLKFYPYIAVIL 183 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL F I+ I + + + G + DD+ + + L K I ++ Sbjct: 184 NVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYV---VNGLN-KNIVTY 239 Query: 251 GKSKNADFQLRKW----KQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305 G +++D++ + K C + +V + + M I G H N L L + + Sbjct: 240 GIYEDSDWKAKNISFDDKGC---AIFDVYYKEEYMGNFKLSIPGKHNVYNALAALAVSHL 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS------- 358 + D+ A L+ F +G +R+ T++D+ Y +PA +KA + Sbjct: 297 VGIDIKKASHYLTEF---KGTHRRFEIKGIVDGITIVDD-YAHHPAEIKATLEAAKNYPH 352 Query: 359 --VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ++ PH R ++L D E SF D A+ + + +I +++ KD Sbjct: 353 KRIICIFQPHTYSRTKSLLNDFAE------SF--DNADKIIIADIYAAREKDTGIVSSKD 404 Query: 417 ALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + R V Y + D + ++ + GD+V+ Sbjct: 405 LVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440 >gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243] gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243] gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA] Length = 475 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 43/268 (16%) Query: 111 IAITGSVGKTTTKEML-----------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 +A+ G+ GKTTT ML T + I + Y N H G T A V+ Sbjct: 110 LAVAGTHGKTTTSSMLASVLDGMGEDPTFLIGGIVRAYGT----NAHSG---TGAHYVVE 162 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D + HL P ++T I HL ++ ++EI A + Sbjct: 163 ADE-----------SDKSFMHL-SPRAVLVTNIEADHLDHYRDLDEIYEKFASFIGSVPD 210 Query: 220 TGTIFL--NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G + + D++ + +A K ++++G S D ++ ++ S ++L Sbjct: 211 DGGVVVACGEDEALVRVARASG-----KRLFTYGFSDACDVRIASYEPNGVGSDFTLELP 265 Query: 278 GKSMEVVH--HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 S+ H G H N +G++ L D A +AL+ F G +R+ Sbjct: 266 DGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADF---AGVKRRFDLVGE 322 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI 363 G T++D+ Y +P + A I S + Sbjct: 323 AGGVTVVDD-YAHHPTEIAATIEAASHL 349 >gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 480 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 12/154 (7%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A I ITG+ GKT+T EM + L++ T +G +IG ++ A + D EL Sbjct: 104 AQWIGITGTNGKTSTTEMTSEMLTACDLTAPAVG----NIGKAVSHAVVDPANDVLCVEL 159 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L T + A IT IA HL GIE A+ KA++F ++K + N Sbjct: 160 SSFQL----HFTDSLALDCAAITNIADDHLDWHGGIENYAADKAKVFHRVKK--ALVYNA 213 Query: 228 DDSFFELLK-AKSHALGIKTIYSFGKSKNADFQL 260 DD L A A G + + F S+ D Q+ Sbjct: 214 DDERVTRLAFAAETAEGCRKV-GFTLSEPQDGQI 246 >gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 477 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + I +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L +K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALASKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L +T +AL F G G+R+ + G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPETIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|313634141|gb|EFS00802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria seeligeri FSL N1-067] Length = 147 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +++++YN++P +++ + + G+ + + VL DM E+GELS H + AEVL Sbjct: 19 ILNDAYNSSPTALQTVLKTFMHMDSKGKPKYL-VLADMLELGELSVPLHQESAEVLEEGT 77 Query: 401 ISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 I ++L G + A I V + +T + L + + + ++VK S G Sbjct: 78 IEKIFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNEWILVKGSYGMGL 137 Query: 458 YRLINLLL 465 ++ L+ Sbjct: 138 KDVVENLI 145 >gi|289640743|ref|ZP_06472914.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca glomerata] gi|289509319|gb|EFD30247.1| UDP-N-acetylmuramate/alanine ligase [Frankia symbiont of Datisca glomerata] Length = 482 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+ G+ GKTTT M+T+AL + + IGS N G + G E+ + Sbjct: 119 LAVAGTHGKTTTSLMVTVALQACGADPSFVIGSDINEAGS---------NAHAGTGEIFV 169 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + E L+ P A++T + HL + E++ +A A +G++ G + DD Sbjct: 170 AEADESDGGFLLLAPSGAIVTNVEADHLDYYQRPEDVEAAFARFVDGVDPNGFVVACADD 229 Query: 230 SFFELLKA---KSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EV 283 LL A + G K + ++G+S +A ++ + S EV ++G+ + E+ Sbjct: 230 PGAALLVAALRERERDGGKAPRVTTYGESVDAHVRVELPMVSAAGSTCEVVVRGRRLGEL 289 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L L ++ L+ F G +R+ G +ID Sbjct: 290 SLRVPGRHNLHNAAGALAAGLELGLPAAGLLEGLAGF---AGARRRFETKGTAGGIRVID 346 Query: 344 ESYN 347 + N Sbjct: 347 DYAN 350 >gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] Length = 492 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 149/375 (39%), Gaps = 46/375 (12%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + FFAIKG DGHDFI AV +GA +V + G + Sbjct: 23 RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVEVPPGVV------ 76 Query: 88 VDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ++ V LA AA K ++ +TG+ GKTTT +L+ K IG+ Sbjct: 77 LEVVPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIGT 136 Query: 143 YNNHIG---------VPLT------LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186 +G P + LARM + ++ + E+ L R V + Sbjct: 137 LYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALERVTG--VAFDV 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL--EKTGTIF--LNYDDSFFELLKAKSHAL 242 AV T + HL +E+ KA +F L EK G +N DD + + L + + Sbjct: 195 AVFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRGV 254 Query: 243 GIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + T G+ D++LR E + + G+ +EV G N L L Sbjct: 255 EVLTYGLKEGEVHALDYELR-----PEGTRLLASAGGERVEVKLSLPGIFNVYNALAALA 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +D A +ALS GR + R Q F L+D Y P + + Sbjct: 310 VAVGEGMPLDLAARALSRVQAVPGRCE--RIDEGQDFTVLVD--YAHTPDGLLNILRTAR 365 Query: 362 QISPHGEGRRIAVLG 376 +IS GR I V G Sbjct: 366 EIS---RGRVIVVFG 377 >gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1] gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1] Length = 463 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 136/366 (37%), Gaps = 42/366 (11%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPV 158 +A +R K IA+ GS GKT+T M + L+ IG N G L Sbjct: 98 LAELMRLKVNGIAVAGSHGKTSTTSMAGVVLAEAGLDPTVVIGGQVNSFGSNAKLGTG-- 155 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 DF + E S +R P + ++T I H+ +++ +E + +A E + Sbjct: 156 --DFLVAEADESDGSFVRL-----SPVLEIVTNIDHEHVDHYADLEAVKAAFLEFINRIP 208 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G L DD L K + ++G S AD Q R+ S EV + Sbjct: 209 FYGAAILCLDDDNVTALLPMIR----KRVITYGLSSQADIQAREITTRGFISRFEVWSRQ 264 Query: 279 KSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + V + G H N L + + L T +AL+ + G +R + Sbjct: 265 QRLGKVSLAVPGRHNVYNALAAIALGRELEIPFATIARALNNY---SGVQRRLQVKGESD 321 Query: 338 FFTLIDESYNANPASM------------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 T+ID+ Y +P + + + VL Q PH R + D C Sbjct: 322 GITVIDD-YGHHPTEIRATLAALRAAWPRRRLVVLFQ--PHRYSRTAGLFQDFC------ 372 Query: 386 QSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLV 442 +FH DL + ++Y + AL AL R V Y + L + L Sbjct: 373 TAFHDADLLILNNIYAAGEAEIPEVAGDALALALRRHGQREVSYVPELADLPTAVLGRLQ 432 Query: 443 DGDVVV 448 GDVV+ Sbjct: 433 RGDVVL 438 >gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica LVS] gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. holarctica 257] gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica URFT1] gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica URFT1] gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica LVS] gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. holarctica 257] gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 451 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +AITG+ GKTTT +L L + K + I +G + A + V+ G +L + Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL + P + +IT I H++ ++ + F E +I+L DD Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L AK + K + S+G S NAD Q+ + E + +++ +G + G Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275 Query: 290 YHMAQN 295 + QN Sbjct: 276 RYNVQN 281 >gi|290890810|ref|ZP_06553877.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429] gi|290479582|gb|EFD88239.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429] Length = 435 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++G+ GKT+T +L LS+ + T IG V G+F Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147 Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + H P +A+IT I H + ++++ SA +E + ++K IF + Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + +K K+ I S+G K+ F + +E S+ + G+ + I Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346 G H + + + L VD K L + +G + R ++Q T++D+ Y Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P +KA I Q P+ R +AV Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341 >gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] Length = 512 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS----IPV 85 + +DSR I + F AI+G DG FI +A+ +GA +V+ D G + +PV Sbjct: 47 LELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAGVPV 106 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L++LA I +TG+ GKTT +++ L + A +G+ N Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166 >gi|118586734|ref|ZP_01544171.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163] gi|118432822|gb|EAV39551.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163] Length = 435 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++G+ GKT+T +L LS+ + T IG V G+F Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147 Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + H P +A+IT I H + ++++ SA +E + ++K IF + Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + +K K+ I S+G K+ F + +E S+ + G+ + I Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346 G H + + + L VD K L + +G + R ++Q T++D+ Y Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P +KA I Q P+ R +AV Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341 >gi|307294498|ref|ZP_07574340.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium chlorophenolicum L-1] gi|306878972|gb|EFN10190.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium chlorophenolicum L-1] Length = 440 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 8/125 (6%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 ++G + A+A K ++ ITG+ GK+TT T + I +T +IG+P Sbjct: 93 IIGDIELFALARPALPKHRVVGITGTNGKSTT----TALVHHIIETAGIPTRMGGNIGLP 148 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + L + P+ + G++ L +S +I LT + +AV+ I P HL ++G E ++K Sbjct: 149 I-LGQEPLP-EGGVYVLELSSY-QID-LTQSLDCDVAVLLNITPDHLDRYNGFEGYVASK 204 Query: 211 AEIFE 215 A +FE Sbjct: 205 ARLFE 209 >gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str. Cudo] gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis M163/99/10] gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis B2/94] gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M644/93/1] gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M13/05/1] gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis M292/94/1] gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp. F5/99] gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M13/05/1] gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M163/99/10] gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis B2/94] gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M644/93/1] gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99] gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M292/94/1] gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str. Cudo] gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M13/05/1] gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M644/93/1] gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis B2/94] gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M163/99/10] gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99] gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M292/94/1] Length = 467 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] Length = 486 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 48/367 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + DSR + F AI G +GH++I A + GA +V + L P Sbjct: 23 ITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSGATAIVCE-----QLPQLLFPDV 77 Query: 87 GVDDVLGALNKLAVAA-----RLRSKATIIAITGSVGKTTTKEML--------------- 126 V + LA+ A K T++ +TG+ GKTT +L Sbjct: 78 SYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAGQKAGLLS 137 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 T+A+ + + + + + + L M V + E+ + + R T ++ Sbjct: 138 TVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHR--TEGLQFA 195 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSHA 241 + T + HL K F+ L T +N DD + KA+ Sbjct: 196 GGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNNDDKNGAFMLQNTKAQKKT 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +KT YS K+ E + + L+ EV IG A N+L Sbjct: 256 YALKT-YSDYKA-----------YIIESRFDGLLLRINQHEVWTKLIGEFNAYNLLAVYA 303 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++L D A+ +S P GR + Y ++ G T++D Y P +++ + ++ Sbjct: 304 AATLLGIDELEALTLISAIEPVAGRFQ-YAVSVT-GVITIVD--YAHTPDALENVLKTIN 359 Query: 362 QISPHGE 368 I H E Sbjct: 360 DIRTHNE 366 >gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC 33386] gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC 33386] Length = 448 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 36/336 (10%) Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V++ + + + + A L + + IA+ G+ GKTTT ML I + K +G Sbjct: 85 YAVNNNIKKIKRGELLALLMNDSKGIAVAGTHGKTTTSSMLGITMLE-KDPCIVVGGIIP 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG + + ++ I E S +LT P +++T + HL N E Sbjct: 144 EIGSNSKVG----NSEYFIAEADESD-NSFLYLT----PSYSIVTNVEADHLENHGSYEN 194 Query: 206 IASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 I K E ++KT I LN D + L K+ + I+ ++AD + Sbjct: 195 I---KKSFEEFIDKTSDIVVLNKDCHEIKKLNLKNKNI----IWYSINDESADIYAANIE 247 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + +S EV G+S+ I G H N L + + D+D + L F Sbjct: 248 YKNRESHYEVVKNGESLGKFRLSIPGEHNISNSLGVIYLAHEFLCDMDKVKEYLYNFR-- 305 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAV 374 G +RY+ ++ +ID+ Y +P + A I+ +I PH R Sbjct: 306 -GANRRYQILYDKS-IKIIDD-YAHHPTEITATINAAKKIETGKITVVFQPHRYSRTNFF 362 Query: 375 LGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLS 407 L + E +L+ + I AE ++YNIS L+ Sbjct: 363 LNEFAESLKLADEVYLLPIYSAEEENIYNISSEKLA 398 >gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] Length = 481 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 9/95 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS DSR + FF +KG ++ +F+ AV+ G V TD ++IPV V+ Sbjct: 38 ISYDSREVDASTLFF-VKGDNFK-KEFLEKAVESGLQFYVSETDF-----EVTIPVILVN 90 Query: 90 DVLGALNKLAVA--ARLRSKATIIAITGSVGKTTT 122 DV A++ LA+ + K ++A TG+ GKTT+ Sbjct: 91 DVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125 >gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M490/95/1] gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti B1/94] gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti B1/94] gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M490/95/1] gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti B1/94] gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M490/95/1] Length = 467 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|15639888|ref|NP_219338.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026126|ref|YP_001933898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum subsp. pallidum SS14] gi|6093445|sp|O83873|MURD_TREPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|3323217|gb|AAC65856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018701|gb|ACD71319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum subsp. pallidum SS14] gi|291060261|gb|ADD72996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 532 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 12/159 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S A ++A++GS GK++T L +L ++ A +G N PL R + Sbjct: 115 SPAPLLAVSGSKGKSSTASALCYSLRALGFP-AFLG--GNSTVSPLEFVRHTTPATPVVL 171 Query: 166 ELGMSHLGEIRFL---------THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 EL L ++R + L+RP IA++T I H + ++ +E + K ++ Sbjct: 172 ELSSWQLADLRAVDAQDHTVHHAGLLRPEIAIMTPIMADHQNWYADMESYVADKQVLYAH 231 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 T+ N DD + ++ G++ + +S Sbjct: 232 QGTHDTLLCNADDGWGPRFACEAQKNGVRVFWYTAQSPE 270 >gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella cibaria KACC 11862] Length = 508 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 37/287 (12%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +G + ++ +S +AP+ F IKG +++ A+ KG +V T + Sbjct: 25 KGELKHLAYNSNDVAPETLLF-IKGRF--KAEYLTDAIAKGVKAIVAPTSFTHDT---DL 78 Query: 84 PVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTK----EMLTIALS---SIK 134 P + VDDV A++ L++A ++K +I ITG+ GKT+ EML +A ++ Sbjct: 79 PTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITGTKGKTSATYMAYEMLRVATDDKVALS 138 Query: 135 KTYACIGS------YNNHIGVP--LTLAR-MPVDVDFGIFELGMSHLGEIRFLTHL--VR 183 T I Y H+ P L L R M V G+ + M + + + +R Sbjct: 139 STLQVITGADPKFHYRAHLTTPESLDLFRWMAEAVANGMTHMVMEVSSQAYKMERVYGLR 198 Query: 184 PHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSH 240 ++ V I+P H+ + E+ K +F+ E+ I LN D D F EL++ Sbjct: 199 FNVGVFLNISPDHVGENEHPTFEDYLEHKMMLFDHSEQ---IILNADSDHFSELIEHAEL 255 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 A+ I+ +G+ + + +E LQG + V G Sbjct: 256 AVPRDGIWLYGREDEDSPKADVYYDT-----VEADLQGSTFAVREAG 297 >gi|323126630|gb|ADX23927.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 443 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 40/279 (14%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + G+ GKT+T +L+ L +I T IG R + + +FE S Sbjct: 108 VAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE---SDE 155 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E F+ + P ++IT I H F+GI+++ SA + + ++K +F+ +D Sbjct: 156 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQ-- 209 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291 EL K ++A IY +G + DF + + S V+ G+ + H G H Sbjct: 210 ELKKITANA----PIYYYGFEEGNDFVTSDIARTTHGSDFTVKHDGQIIGRFHVPAYGRH 265 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANP 350 N + + + D++ + L F G +R+ L N+ T+I + + +P Sbjct: 266 NILNATAVIANLFVAGIDMELVAEHLKTF---SGVKRRFTEKLINE---TIIIDDFAHHP 319 Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379 + A I Q PH R IA+L D Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFA 358 >gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio sp. K90mix] gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio sp. K90mix] Length = 448 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 16/146 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A +IAITGS GK+T ++ L++ + A G++ G P PV V+ + Sbjct: 105 AQAPVIAITGSNGKSTVTALVGEILTAAGRKVAIGGNF----GTPALDLLDPV-VEVYVL 159 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L + ++P A I I+P H+ + + AKA I L++ L Sbjct: 160 ELSSFQLER----SEQLKPDGAAILNISPDHMDRYPDLAAYIQAKARI---LDRAARGVL 212 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG 251 N DD + L + G++ + SFG Sbjct: 213 NRDDPWLRELPLPA---GLRVV-SFG 234 >gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1] gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1] Length = 467 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGVDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIR-VMRISKEKHLDRGYFADGAKLLWSQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891] gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891] Length = 486 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 61/375 (16%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IA+ G+ GKTTT ++T S + T+ G N +G L Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVKSAGTNARLGSSRIL---------- 174 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 + + + FL HL +P ++++T I H+ + G E + + L G Sbjct: 175 ---IAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQ 229 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-M 281 + DD L K + + ++G S +AD ++ ++Q +Q V QGK+ + Sbjct: 230 AIVCVDDPVVRELIPKIS----RQVITYGFSDDADVRIANYRQDGQQGKFTVIRQGKADL 285 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRY----RCALN 335 ++ + G H N L +++ T D D AI LS +G G+R+ Sbjct: 286 DITLNIPGRH---NALNASAAIAVATEDDIADEAI--LSAMAGTQGTGRRFDHLGEFDTG 340 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAE 394 G L+D+ Y +P + I Q + +G E +R+ ++ ++ + D A Sbjct: 341 NGQAMLVDD-YGHHPTEVDVTI----QAARNGWEDKRLVMIFQPHRYSR-TRDLYDDFAN 394 Query: 395 VLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFL--------FIQSSL 441 VL ++ V+ +G +A D AL R+I +D +F+ + + L Sbjct: 395 VLEQVDVLIMLDVYSAGEKPIAGADGRALCRTIRSRGK--LDPIFVPESKALPAVLANVL 452 Query: 442 VDGDVVVVKSSNSCG 456 DGD+V+ + + G Sbjct: 453 QDGDLVLTQGAGDVG 467 >gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 476 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 147/358 (41%), Gaps = 55/358 (15%) Query: 96 NKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTY---ACIGSY 143 N++ V R +R K+T+ A+ G+ GKTTT M+ L + I T I SY Sbjct: 90 NRIPVVRRAEMLAELMRLKSTV-AVAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINSY 148 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 ++ AR+ D D+ + E S +R L A++T I P HL ++ Sbjct: 149 GSN-------ARLG-DSDWMVVEADESDGSFLRLDGTL-----AIVTNIDPEHLDHYGSF 195 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E++ A E + G FL D + + + + + + ++G S AD + Sbjct: 196 EKVQDAFVEFVSNVPFYGAAFLCIDHPVVQSILPR---IRDRRLITYGFSAQADIRAVDI 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVH-HGI-----GYHMAQNMLMTLGIVSILTADVDTAIK-A 316 S + ++ + ++ I G H QN L +G V++ + D AI+ Sbjct: 253 TPISGGNRFTAVIRSRDGDIRRIENIFLPMPGRHNIQNALSAIG-VALEFSIPDAAIRDG 311 Query: 317 LSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAIS---------VLSQISPH 366 + F + R R + G +ID+ Y +P +KA +S V++ + PH Sbjct: 312 FARFGGVKRRFSRVGEIKIGDGSVLVIDD-YGHHPVEIKAVLSAARESAQQRVIAVVQPH 370 Query: 367 GEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R + L D+ M E +F+ D+ V +Y ++G AL L + H Sbjct: 371 ----RFSRLHDL--MTEFQSAFNDADMVFVAPVYAAGEQPIAGVDSQALVSGLKQHGH 422 >gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 350 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 24/257 (9%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 SR + P + + AI+G DGH FI AV +GA VV D +P V Sbjct: 6 SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDVPYVRVTSARR 65 Query: 94 ALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148 A + L+ V T++ +TG+ G TT+ LT L + S N G Sbjct: 66 AASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNETGLRT 125 Query: 149 VPLTLARMPVD---------VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 VP L + VD G + +S G ++ T V +A+ T + HL Sbjct: 126 VPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLTREHL 185 Query: 198 SNFSGIEEIASAKAEIFEGL--EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 +E A+AKA +F GL EK G I LN DD + +++ + I ++G ++ Sbjct: 186 DFHGSMENYAAAKARLFSGLSAEKPGAI-LNRDDPYADVMAENC----VAPIVTYG-VRS 239 Query: 256 ADFQLRKWKQCSEQSWM 272 D + R + ++ M Sbjct: 240 GDVRGRGERDRGKRPEM 256 >gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis str. MC2 155] gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 482 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 8/190 (4%) Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P++AV+T I HL +F G E+ +A + F E + G + + DD L ++ AL Sbjct: 183 PNVAVVTNIEADHL-DFFGSEQAYTAVFDSFVERIAPGGALVVCTDDPGAAALADRTDAL 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGI-GYHMAQNMLMTL 300 GI+ + N L W+Q + ++L G+ + V + G HMA N L L Sbjct: 242 GIRVLRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMALNALAAL 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A D+ + L+ F EG +R+ + D+ Y +P ++A + Sbjct: 302 LAAREIGAPTDSVLDGLAGF---EGVRRRFELVGTAAGARVFDD-YAHHPTEVRATLEAA 357 Query: 361 SQISPHGEGR 370 + GR Sbjct: 358 RTVVDQNGGR 367 >gi|294085903|ref|YP_003552663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665478|gb|ADE40579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 451 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 10/165 (6%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++++ +A R +S A +IAITG+ GK+T +L L+ A G +IG Sbjct: 99 ISEVELALRAKSNARLIAITGTNGKSTCTALLAHCLTEAGAKIAVGG----NIGDAACSL 154 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 P + I EL L T + P V+ I P HL G++ +AK + Sbjct: 155 EDPGTNGYIILELSSYQL----ETTPSLAPDFGVVLNITPDHLDRHGGMDGYVAAKQLMV 210 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHA--LGIKTIYSFGKSKNAD 257 G + L DD++ + A + +KT+ S K D Sbjct: 211 TATRAGGHVILGSDDAYVRDFANTNVADTVTVKTVTSSDAPKGRD 255 >gi|153949929|ref|YP_001402343.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|165928218|ref|ZP_02224050.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937849|ref|ZP_02226410.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008796|ref|ZP_02229694.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211992|ref|ZP_02238027.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401224|ref|ZP_02306724.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422021|ref|ZP_02313774.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426494|ref|ZP_02318247.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025732|ref|YP_001722237.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894045|ref|YP_001871157.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|270487851|ref|ZP_06204925.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27] gi|294502644|ref|YP_003566706.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003] gi|152961424|gb|ABS48885.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|165914261|gb|EDR32877.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919829|gb|EDR37130.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992135|gb|EDR44436.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206738|gb|EDR51218.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960158|gb|EDR56179.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049249|gb|EDR60657.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054592|gb|EDR64400.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752266|gb|ACA69784.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186697071|gb|ACC87700.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|262364621|gb|ACY61178.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis D182038] gi|270336355|gb|EFA47132.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27] gi|294353103|gb|ADE63444.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003] Length = 500 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M LSSI YA G P V+ G+ + + Sbjct: 131 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 170 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 171 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 229 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD Q+ ++Q Q ++ Sbjct: 230 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 285 Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 Q K + EV + G H A N + + + + + ++AL F +G G+R+ N Sbjct: 286 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 342 Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +G L+D+ Y +P + A I P +RI +L ++ Sbjct: 343 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 397 Query: 387 SFHIDLAEVLSLYNI 401 + D A VLS ++ Sbjct: 398 DLYDDFANVLSQVDV 412 >gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 508 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 26/226 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLS--- 82 ++GI DSR + P F +K + + + ++HA++ GA +++ +T G+L Sbjct: 26 ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNGAKIILYDTKQKFKNGTLKKII 85 Query: 83 --IPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ F + L + L + T+I ITG+ GK+TT +++ + + Sbjct: 86 NHVPIIYFFKLSKNLPQI--LKKYYHFENNFTLIGITGTNGKSTTTHIVSQWANLLNVKI 143 Query: 138 ACIGSY----NNHIGVPLTLARMPVDV----------DFGIFELGMSHLGEIRFLTHLVR 183 +G+ NN++ ++ + F + +S G ++ + Sbjct: 144 GIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHRIEQLP 203 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 IA++T I P HL ++ +AK F T+ +N DD Sbjct: 204 FKIAILTNITPEHLDYHRTMDNYINAKKAFFFKYN-INTLIINADD 248 >gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] Length = 490 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+ ++ + + V ++ DSR + P AF I G DGH ++ +KGA V Sbjct: 5 DLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKGAKAV 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101 +V + A G + V VDD AL ++ A Sbjct: 65 IVEKQVEAPDG---VTVIHVDDTRYALALMSAA 94 >gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 153/392 (39%), Gaps = 54/392 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-V 85 V G+S +S++I P F + G DG +F A++KGA +V+ ++AS + S V Sbjct: 41 VTGLSTNSQAIEPGMVFIGMPGTRVDGGEFWQSAIEKGAIAALVSPSVLASKPNTSDALV 100 Query: 86 FGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 ++ +LA + A+ I+ +TG+ GKTTT ++ L+ ++ A +G+ Sbjct: 101 LTTSNIAKVCAELAASFYAQPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTL 160 Query: 143 YNNHIGV-PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAV 188 Y G + + P +D EL +H E + + V H +AV Sbjct: 161 YTRWPGYEKIAVHTTPFSIDLQA-ELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAV 219 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +++ AKA +F G +N D + G K I Sbjct: 220 FTNLTQDHLDYHKDLDDYFEAKALLFSPDYLKGHAIVNQKDPY-----------GQKLIE 268 Query: 249 SFGKSKNADFQLRKWKQ---CSEQSWMEVQLQGKSMEVVHHG------IGYHMAQNMLMT 299 GK K + + S+ + + + G + +G +N+L Sbjct: 269 RIGKHKTLTYDITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAA 328 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-KAAIS 358 +G L +D + AL F GR +R + + +++ A P ++ + IS Sbjct: 329 VGAALHLGVSLDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDIS 388 Query: 359 V--------------LSQISPHGEGRRIAVLG 376 V L P EGR I V G Sbjct: 389 VIVDYAHTPDSLENALKAARPFIEGRLICVFG 420 >gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Length = 440 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 62/362 (17%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A +IAITGS GK+T + LT ++ +G +IG L + D + + E Sbjct: 107 NAPVIAITGSNGKSTVTD-LTGEMAKAAGVKTAVGG---NIGFA-ALDLLEQDAELYVLE 161 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L T ++ A ++ H+ + G+ + AK IFE E +N Sbjct: 162 LSSFQLET----TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAE---VCIVN 214 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD +++ KT+ SFG + D+ C E+ +E L ++ ++ Sbjct: 215 RDDK-------QTYPDVEKTLKSFGFDQ-GDY------GCIEKDGIEY-LAKNTVPLLAA 259 Query: 287 G----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFF 339 +G H N L+ + ++ ++D + L ++ G +RC A N G Sbjct: 260 NELGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYN-----GLTHRCQVVADNNG-I 313 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396 +++S N AS AA+S L EG+ + +G + ELS + H DL L Sbjct: 314 RWVNDSKATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFSELSPALH-DLN--L 365 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 +Y G ++L PRS+ ETM+ + +L GD+V++ S +C Sbjct: 366 MMYCFGE---DGDQFVSLD---PRSL---LCETMNEAIATLYPTLNKGDMVML--SPACA 414 Query: 457 FY 458 + Sbjct: 415 SF 416 >gi|325957331|ref|YP_004292743.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus 30SC] gi|325333896|gb|ADZ07804.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus 30SC] Length = 437 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L + T IG GVP D F ++E Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F ++ SA + +K +F+ Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + LK Y++G + DFQ K+ + S V GK + E Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N + + +D L F +G +R+ + G +ID+ Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P M+A I Q P Sbjct: 319 YAHHPTEMRATIQAARQKFP 338 >gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea psychrophila LSv54] gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea psychrophila LSv54] Length = 456 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTYACIGSYNNHIGVPL-T 152 L +LA+AA + + ++AITG+ GKTT ++ L +S K+ + +IGVPL Sbjct: 102 LGELALAAPVLDR-PVVAITGTNGKTTVTSLVGDLLRASGKRVFV-----GGNIGVPLLD 155 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L +VD + E+ L L PHIA++ ++P HL + +AK Sbjct: 156 LLSSGDEVDVIVLEVSSFQLE----LAGDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMH 211 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +F+ T ++ DD L S G + Y FG S +D + Sbjct: 212 LFQKQGMTDIAIVSGDDPLCLL----SDGCGEASRYLFGFSAASDISV 255 >gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] Length = 503 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 52/382 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR + P F AI+G YDGH FI Q+ + +P Sbjct: 24 IQGITYDSRRVEPGFLFVAIRGLRYDGHSFI----QEAVARGAAAVVGERAPAVEGVPYV 79 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V AL LA A ++ ++ +TG+ GKTTT ++ L + IG+ + Sbjct: 80 QVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGKTTTTHLVRWVLEAAGHPTGLIGTVH 139 Query: 145 NHI-GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRP----------------HI 186 N I G L + R P D M G LTH+V + Sbjct: 140 NIIGGRSLPVERTTPEAADLQKLLAAMRDAG----LTHVVMEVSSHALTLQRVAGCAFDV 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI-------FLNYDDSFFELLK 236 V T + HL + +E+ A+AKA +F L E GT+ +N DD + + Sbjct: 196 GVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGTVKPGPKAAVINADDPWGTFMA 255 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQ 294 +S A + ++G + AD R E + L + EV G Sbjct: 256 DRSSA----PVITYGIRQAADVTARDV--VVEPGGVRFVLGTRDGEVPVRLRLTGRFNVY 309 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L G L D T + L GR + R Q F L+D Y P ++ Sbjct: 310 NALAAAGAGLALGIDPATVARGLESLPAVPGRLE--RIDRGQPFTVLVD--YAHTPDGLE 365 Query: 355 AAISVLSQISPHGEGRRIAVLG 376 +S + +++ G+GR + V G Sbjct: 366 NVLSTVREMA--GQGRVLCVFG 385 >gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14] gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14] Length = 463 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 27/205 (13%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYA 138 L IPV D L AL A LR IA+ G+ GKTTT ML ++L++ + +YA Sbjct: 92 LGIPVVHRSDALAAL-----MAGLRP----IAVAGTHGKTTTTSMLAVSLTALGLNPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + P + A G E+ ++ E H P +A++ + H + Sbjct: 143 IGGDLD----APGSNAL------HGTGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEG-LEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNA 256 N++ ++EI + E F G + GT+ ++ D D EL + A ++T+ ++G+S +A Sbjct: 193 NYASMDEIYESF-ETFAGKIVPGGTLVISADHDGAREL--TRRLAGSVRTV-TYGESADA 248 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM 281 D ++ +S + V L G + Sbjct: 249 DVRVLSVVPQGLKSEVTVLLDGAEL 273 >gi|51595039|ref|YP_069230.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|150260409|ref|ZP_01917137.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125] gi|167469525|ref|ZP_02334229.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis FV-1] gi|218927752|ref|YP_002345627.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis CO92] gi|229837053|ref|ZP_04457218.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A] gi|229840444|ref|ZP_04460603.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843014|ref|ZP_04463164.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900779|ref|ZP_04515903.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516] gi|20532169|sp|Q8ZIE8|MURC_YERPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|59798206|sp|Q66EK4|MURC_YERPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082521|sp|A7FM65|MURC_YERP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082522|sp|Q1C215|MURC_YERPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082523|sp|Q1CMM6|MURC_YERPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082895|sp|A4TQ82|MURC_YERPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|51588321|emb|CAH19929.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|115346363|emb|CAL19235.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis CO92] gi|149289817|gb|EDM39894.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125] gi|229682118|gb|EEO78210.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516] gi|229689890|gb|EEO81949.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696810|gb|EEO86857.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705996|gb|EEO92005.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A] gi|320016922|gb|ADW00494.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 491 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M LSSI YA G P V+ G+ + + Sbjct: 122 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD Q+ ++Q Q ++ Sbjct: 221 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 276 Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 Q K + EV + G H A N + + + + + ++AL F +G G+R+ N Sbjct: 277 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 333 Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +G L+D+ Y +P + A I P +RI +L ++ Sbjct: 334 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 388 Query: 387 SFHIDLAEVLSLYNI 401 + D A VLS ++ Sbjct: 389 DLYDDFANVLSQVDV 403 >gi|315038910|ref|YP_004032478.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus GRL 1112] gi|312277043|gb|ADQ59683.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus GRL 1112] Length = 437 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L + T IG GVP D F ++E Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F ++ SA + +K +F+ Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + LK Y++G + DFQ K+ + S V GK + E Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N + + +D L F +G +R+ + G +ID+ Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P M+A I Q P Sbjct: 319 YAHHPTEMRATIQAARQKFP 338 >gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 495 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 47/256 (18%) Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL- 242 P + V+T + HL F E+ + E + GT+ + DD L ++HA Sbjct: 185 PDVVVVTNVEADHLDFFGSEEKYVAVFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAAL 244 Query: 243 ---GIKTIYSFGKSKNADF--------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--- 288 G++ ++ +G+ + D +L +K +E ++V+ ++ +V I Sbjct: 245 RARGVR-VFGYGEGTHRDLAPDVTLIAELLDYKPRAEGGMLKVRFSDENRQVTERAIMLS 303 Query: 289 --GYHMAQNML-MTLGIVSI--LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G HMA N + T+ +V++ TA V I++ H +R++ + + D Sbjct: 304 VPGKHMALNAIAATIAVVNLGYPTAKVIAGIESFGGVH------RRFQLRGTEDGVRVFD 357 Query: 344 ESYNANPASMKAAIS-----VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + Y +P ++A ++ V Q P GR I + ++ F + AE LSL Sbjct: 358 D-YAHHPTEVRAVLTAAAEMVAKQAVP---GRVIVAF--QPHLYSRTEQFAAEFAEALSL 411 Query: 399 YNISHVWLSGFHVLAL 414 + HV+AL Sbjct: 412 AD---------HVVAL 418 >gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp. Marseille] gi|166224696|sp|A6T2F7|MURC_JANMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|151280263|gb|ABR88673.1| UDP-N-acetylmuramate--alanine ligase [Janthinobacterium sp. Marseille] Length = 465 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 151/382 (39%), Gaps = 50/382 (13%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLAR 155 LA RLR IAI G+ GKTTT ++ L+ + T+ IG N G L Sbjct: 98 LAELMRLRRG---IAIAGTHGKTTTTSLVASVLAEGGLDPTF-VIGGLLNSAGANAKLGT 153 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214 G F + + + FL + P I VIT I H+ + E++ A E Sbjct: 154 -------GEFIVAEADESDASFLN--LSPVIEVITNIDADHMETYGHDFEKLKQAFIEFT 204 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + L G L DD+ + + K I ++G ++A + K V Sbjct: 205 QRLPFYGVAVLCIDDATVREIMPRIS----KLITTYGFHEDAQVRAIDAKAIDGHMHFTV 260 Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-- 331 +G + M+V + G H QN + I L KAL+ F+ G G+R+ Sbjct: 261 LQEGYAPMQVSLNQPGMHNVQNACAAIAIARELGVADHATQKALTEFN---GVGRRFTRY 317 Query: 332 -----CALNQ---GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 A+N G F L+D+ Y +P A I+ P GRR+ VL Sbjct: 318 GEISLPAVNDKPAGTFALVDD-YGHHPVETAATIAAARGAYP---GRRL-VLAFQPHRYT 372 Query: 384 LSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL----- 435 ++ D +VLS + ++ V+ +G + D + + + +D +F+ Sbjct: 373 RTRDLFEDFVKVLSTTDMLVLAEVYAAGEQPIVAADGRTLAHALRVAGKVDPVFVEKIAD 432 Query: 436 ---FIQSSLVDGDVVVVKSSNS 454 I + + DGDVV+ + S Sbjct: 433 MPATIMNIIKDGDVVITMGAGS 454 >gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium adolescentis ATCC 15703] gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium adolescentis ATCC 15703] Length = 479 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 31/175 (17%) Query: 71 NTDMVASIGSLSIPVFGVDD--VLGA-------LNKLAVAARLR-------SKATIIAIT 114 NTDMV ++ PVF +L A ++++ +A +LR A I IT Sbjct: 55 NTDMV-----MTSPVFNPRTPFILEAQKRNIPVMSEVELAWQLRVNSNTTGKPAQWIGIT 109 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 G+ GKT+T EM + L++ +G +IG ++ A + D EL L Sbjct: 110 GTNGKTSTTEMTSEMLTACGLAAPAVG----NIGKAVSHAAVDPANDVLCVELSSFQL-- 163 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 T+ + A IT IA HL GIE A+ KA++F ++K + N DD Sbjct: 164 --HFTYSLELDCAAITNIADDHLDWHGGIENYAADKAKVFHNVKK--ALVYNADD 214 >gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 503 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----- 81 + G+ +DSR+I F A+KG DG +I +A++KGA V++ + +I Sbjct: 24 LTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHL 83 Query: 82 -SIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 IPV V+ + L+ +A + +I +TG+ GKTT +L + + K A Sbjct: 84 NKIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSA 143 Query: 139 CIGSYNN 145 +G+ N Sbjct: 144 VMGTLGN 150 >gi|86137685|ref|ZP_01056262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. MED193] gi|85826020|gb|EAQ46218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. MED193] Length = 465 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 15/133 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 L ++AITGS GK+TT +L L S+ + G+ + R +D+D Sbjct: 116 LDQPPKVVAITGSNGKSTTVALLHHILESVGRDSQMAGN----------IGRGVLDID-P 164 Query: 164 IFELGMSHLGEIRFLTHLVR---PHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEK 219 E G+ L + T L R P +A++T ++P HL +G+ +AK +F EG Sbjct: 165 PGEAGVVVLELSSYQTELARALTPDVAILTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPD 224 Query: 220 TGTIFLNYDDSFF 232 I ++ D+ F Sbjct: 225 RAIIGVDEDEGLF 237 >gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC 14672] gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC 14672] gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC 14672] Length = 462 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 25/204 (12%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYA 138 L IPV D L AL LR IA+ G+ GKTTT ML ++L+++ + +YA Sbjct: 92 LGIPVVHRSDALAALMD-----GLRP----IAVAGTHGKTTTTSMLAVSLAALGRRPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G + P + A G E+ ++ E H P +A+I + H + Sbjct: 143 IGGDLD----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIILNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNAD 257 N++ +EEI + + GT+ ++ D + EL + A ++T+ ++G++++AD Sbjct: 193 NYASMEEIHQSFETFVGRIVPGGTLVISADHEGARELTRRLDGA--VRTV-TYGEAEDAD 249 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSM 281 ++ +S + V+L G + Sbjct: 250 VRVLSVVPQGLKSEVTVELDGAPL 273 >gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis ATCC 23445] gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC 23445] Length = 467 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 39/264 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT ++ + + + G +IG + P F + E Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGG----NIGTAILTLEPPCADRFYVVECSSY 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + L + P ++ + P HL +E A+ K + + +GT + DD+ Sbjct: 173 QID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERL---VAASGTAIIGIDDA 225 Query: 231 FFELLKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + H GI+ + K K+ AD W Q E + S+E + Sbjct: 226 YCQAIADRLHGAGIRVV-RISKEKHLDRGYFADGAKLLWAQDGEIDEI------ASLEGI 278 Query: 285 HHGIGYHMAQNMLMTLGIVSILTA-----DVDTAIKAL-SVFHPKEGRGKRYRCALNQGF 338 G H AQN L IV+ L+A ++ +K+ + H E G+R G Sbjct: 279 GSLRGAHNAQNALAA--IVACLSAGLSREEIHAGLKSFPGLAHRMEQVGRR-------GK 329 Query: 339 FTLIDESYNANPASMKAAISVLSQ 362 +++S N + A+S Q Sbjct: 330 VLFVNDSKATNAEATAPALSSFPQ 353 >gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 477 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 25/269 (9%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLT 152 + + A+ A L IA+ G+ GKTTT + LS + T+ IG L Sbjct: 102 MPRAAMLAELMRFRRGIAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLL 153 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKA 211 A + G + + + + FL + P +AVIT I HL N+ + + +A A Sbjct: 154 AAGANAKLGGGQWLVAEADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFARVQAAFA 211 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E + L G L DD L K+ + + S+G S+NAD + Q + Sbjct: 212 EFLQRLPFYGLALLCIDDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMR 267 Query: 272 MEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 ++L +G + V G H N L I L + T +AL F G G+R+ Sbjct: 268 FTLRLPEGTTTPVTLALPGRHNVLNALAAAAIGWQLGVEPQTIARALENF---AGIGRRF 324 Query: 331 ----RCALNQGFFTLIDESYNANPASMKA 355 + G + + Y +P ++A Sbjct: 325 NDLGEVTTSTGARVQVVDDYGHHPRELEA 353 >gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01] gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01] Length = 473 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 80/381 (20%), Positives = 159/381 (41%), Gaps = 42/381 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIG-----SYNNHIGVPLTLARMPV 158 S+ T I +TG+ GKTTT ++ IA + T+ G N+ +G + Sbjct: 113 SQKTPIMVTGTHGKTTTSALIAWLIAAVGLDPTFMIGGILTNFKSNHQVGTGAYMVIEGD 172 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + D F+ G +FL + P V+T++ H F ++ + SA + + L Sbjct: 173 EYDTAFFDKGP------KFLHYT--PSRTVLTSVEFDHADIFKDLDHVKSAFTSLVKNLP 224 Query: 219 KTG-TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + +F DD+ ++L+ L T Y FG + A +++ + + +++EV + Sbjct: 225 RESLLVFQEADDNIKDILQQADCWL---TPYGFG--EKAPWRIGEMRTEPPYTFIEVFRR 279 Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G+ E +G H A N L + +V L V+ L F +G +R + + Sbjct: 280 GEFFAEFKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETF---KGVARRQQVRGVK 336 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH------I 390 T++D+ + +P +++ I + P + R+A + + + F Sbjct: 337 NNITVMDD-FAHHPTAVRETIKA---VKPFYDKGRVAAVFEPRTNSSRRKVFQDVYPTVF 392 Query: 391 DLAEVLSLYNISHVWL----SGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 D A+++ + + + F L +D R H+ + G+ F+ +L GD Sbjct: 393 DDADIICIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPGD 452 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 + ++ S+ GF + LL+ Sbjct: 453 LALIMSNG--GFENIHERLLD 471 >gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 478 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 124/307 (40%), Gaps = 53/307 (17%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V N V + + IPV +LG L +L IAI G+ GKTTT ++ Sbjct: 74 VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTTSLVA 124 Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +A + T+ IG N G L R DF + E S ++ P Sbjct: 125 SVLAEGDLDPTF-VIGGKLNSAGANARLGRG----DFIVVEADESDASFLQLF-----PA 174 Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALG 243 + V+T I H+ + + + A + + + G L DD+ +++ S Sbjct: 175 MEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDIIPFVS---- 230 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------IGYH 291 + I +G S++AD +R ++ + M ++ ++ V HG G H Sbjct: 231 -QPILRYGLSEDAD--IRASNVRADGTRMHFTVERRT--VRRHGNKPGPLNVTLNLPGLH 285 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALNQGFFTLIDESY 346 +N L +GI + L IKALS F G G+R++ + G FTLID+ Y Sbjct: 286 NVRNALAAIGIATELGVGDQAIIKALSEF---SGVGRRFQRYGDIPLASGGKFTLIDD-Y 341 Query: 347 NANPASM 353 +P M Sbjct: 342 GHHPVEM 348 >gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] Length = 485 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 152 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552] gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552] Length = 452 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 60/213 (28%) Query: 39 PQEAF-----FAIKGPHYDGHD-FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 P E F F IK P + H FIL ++ +IPV+ Sbjct: 60 PDELFERDFDFVIKNPGINYHKPFILRLKKR------------------NIPVY------ 95 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-----HI 147 ++ +A ++ K I +TG+ GKTTT ++ L G Y N ++ Sbjct: 96 ---TEIELAYQVAKKQHYIGVTGTNGKTTTVTLIDKILK---------GQYQNVHLAGNV 143 Query: 148 GVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+PL + +D + E + MS+ + T +P+++ I + P HL Sbjct: 144 GMPLC----DIVLDHNLLEEENHYIVIEMSNFQLLDIDT--FKPNVSTIINLTPDHLDYM 197 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + ++E ++K I++ K +N DD + Sbjct: 198 ASLDEYYASKTNIYKNTNKNDCFVVNLDDQVLD 230 >gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] Length = 689 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 33/301 (10%) Query: 99 AVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP- 150 AV+AR+ S+ T+I ITG+ GKTTT + AL + + +G+ + VP Sbjct: 116 AVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALRAAGRVVGLVGTVEIRVDGTVVPS 175 Query: 151 -LTLARMP-------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV--ITTIAPAHLSNF 200 LT P V + G+ + M L + H AV T ++ HL Sbjct: 176 SLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALGRVDGCHFAVGGFTNLSQDHLDYH 235 Query: 201 SGIEEIASAKAEIFEGLEKTGT--IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 ++E +AKA +FE T + DD + + T + + AD+ Sbjct: 236 RTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRAADVAAQG-AATPITVSTTGPADW 294 Query: 259 QLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + Q+ + G E+ G + N L+ + + DVDTA+ Sbjct: 295 SVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVANALLAVAMTVAAGTDVDTAVAG 354 Query: 317 LS-VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ V P G+ + Q F ++D Y PA+++A VL+ + GR VL Sbjct: 355 LAHVAVP----GRLEKVERGQEFLAVVD--YAHKPAAVEA---VLATLGAQTRGRLAVVL 405 Query: 376 G 376 G Sbjct: 406 G 406 >gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus hilgardii ATCC 8290] gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus hilgardii ATCC 8290] Length = 460 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + + + ++ +AA++ + A II +TGS GKTTT M+T L+ +K + N Sbjct: 92 AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148 Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV T + D I EL L I+ L PH+AV+T I HL + Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AK I +N+D + L +S A Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSRA 240 >gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] Length = 490 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 35/370 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI+ DSR++ F A+KG DG F AV++GA ++ DM +I +PV Sbjct: 24 ITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRGAVAIIAGKDM--AIADAGVPVL 81 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT----TKEMLTIA------------L 130 VDD L A + ++A+TG+ GKT+ T+++ A Sbjct: 82 HVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAANIGTTGVF 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM---SHLGEIRFLTHLVRPHI 186 S + Y + + + P+ L R+ ++ G+ M SH + R L VR Sbjct: 142 SPTRSDYNSLTTPD-----PVELHRVLAELASEGVTHAAMEASSHGLDQRRLDG-VRLAA 195 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 196 GAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGCD 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ N L++ + + +EV++ + E+ G N L+ G+ + Sbjct: 256 VKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++AL++ GR A G +D Y P +++ +VL+ + P Sbjct: 315 GVPAAAAMRALALLKGAPGR-LDLVGATEDGAPAYVD--YAHKPEALE---NVLTSVRPF 368 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 369 TTGRVIVVFG 378 >gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 487 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 79/365 (21%), Positives = 144/365 (39%), Gaps = 45/365 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I +DSR + P F I G DGH F AV+KGA ++ + + + + Sbjct: 23 ITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEKPVDVEVPVVRVK-- 80 Query: 87 GVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 A+ LA A + K +I +TG+ GKTT ++ S K IG+ Sbjct: 81 ---STKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIE 137 Query: 145 NHIG---------VP--LTLAR-----MPVDVDFGIFELGMSH---LGEIRFLTHLVRPH 185 IG P LTL + + +V+ + E+ SH LG + H Sbjct: 138 IRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMMEVS-SHALDLGRV----HGCDFD 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGL------EKTGTIFLNYDDSFFELLKAKS 239 +AV + + HL +E+ AK +F L + LN DD+ E + Sbjct: 193 VAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKFAVLNADDAATEEYIKNT 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A T+ ++G +++D + + + + ++ +++ V IG N+L Sbjct: 253 AA----TVITYGIDRDSDIRATNIQITNSGTTFDLTTPTETVRVEMKLIGKFSVYNVLAA 308 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + ++ + V EG R+ + FT+I + Y P S++ + Sbjct: 309 TASCLVSGIPLSVIVEEIKVL---EGVSGRFEVVDAEQDFTVIVD-YAHTPDSLENVLKT 364 Query: 360 LSQIS 364 + + + Sbjct: 365 VKEFA 369 >gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus buchneri ATCC 11577] gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus buchneri ATCC 11577] Length = 460 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + + + ++ +AA++ + A II +TGS GKTTT M+T L+ +K + N Sbjct: 92 AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148 Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV T + D I EL L I+ L PH+AV+T I HL + Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AK I +N+D + L +S A Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSRA 240 >gi|116491263|ref|YP_810807.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1] gi|122276555|sp|Q04EI0|MURC_OENOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116091988|gb|ABJ57142.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1] Length = 435 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 35/269 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++G+ GKT+T +L LS+ + T IG V G+F Sbjct: 104 IAVSGAHGKTSTTSLLAHILSNFESTSYLIGD----------------GVGKGVFSSKYF 147 Query: 171 HLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + H P +A+IT I H + ++++ SA +E + ++K IF + Sbjct: 148 VVEADEYDRHFQPFTPDVAIITNIDWDHPDYYKSLDDVKSAFSEFADHVKK--IIFAYGE 205 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + +K K+ I S+G K+ F + +E S+ + G+ + I Sbjct: 206 DPEIKKIKPKT-----ARILSYGFEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATI 260 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESY 346 G H + + + L VD K L + +G + R ++Q T++D+ Y Sbjct: 261 EGDHGILDTTAAIAVADYLGFSVDQIQKGLLTY-----QGAKRRFNISQVADLTIVDD-Y 314 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL 375 +P +KA I Q P+ R +AV Sbjct: 315 AHHPTEIKATIDAARQKFPN--KRLVAVF 341 >gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 475 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 91/390 (23%), Positives = 164/390 (42%), Gaps = 53/390 (13%) Query: 111 IAITGSVGK--TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GK TT+ +A + + T+ IG N G L + G + + Sbjct: 108 IAIAGTHGKTTTTSLVTSVLAEAGLDPTF-VIGGRLNSAGANAKLGQ-------GEYIVV 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL L P +AV+T I H+ + + SA + + GT L Sbjct: 160 EADESDASFLNLL--PVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAILCT 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS------ 280 D+ + E+L + + S+G S++A Q+R ++ M ++Q ++ Sbjct: 218 DNPAIREILPDVT-----CPVTSYGFSEDA--QVRAVDVRADAGRMRFRVQRRNGVTLPD 270 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----CALN 335 ++VV + G H N L + + L + ++AL+ F +G G+R++ A Sbjct: 271 LDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQF---KGVGRRFQRYGELPAQG 327 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 G FTLI E Y +P M A ++ P GRR+ + F D +V Sbjct: 328 GGTFTLI-EDYGHHPVEMTATLAAARGAFP---GRRLVLAFQPHRYSRTRDCFE-DFVKV 382 Query: 396 LSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444 + + ++ V+ +G + D +L R++ V + + + L I + G Sbjct: 383 MGSADAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARSG 442 Query: 445 DVVVVKSSNSCGFY--RLINLLLEEFPAIQ 472 DVV+ + S G +++ +L E PA+Q Sbjct: 443 DVVLCMGAGSIGAVPAKVVEMLRAEAPAVQ 472 >gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis biprosthecum C19] gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis biprosthecum C19] Length = 475 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R++ +AITG+ GK+TT ++ L S K G N IGV L L M + + Sbjct: 113 RNRPKTVAITGTNGKSTTTALIGHILKSAGKNVHVGG--NIGIGV-LDLDEMQPGAVY-V 168 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L L+ +P ++++ ++P HL G++ +AK IF EK T Sbjct: 169 IETSSYQLD----LSLTFKPDVSILMNLSPDHLDRHGGMDGYIAAKKRIFMNQEKGQTAV 224 Query: 225 LNYDDSF 231 + DD + Sbjct: 225 IGADDDY 231 >gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia inopinata F0304] gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia inopinata F0304] Length = 499 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 26/166 (15%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------ATIIAITGSVGKTTTK 123 ++D + + + IP+ ++++ A ++R++ A I ITG+ GKT+T Sbjct: 61 HSDFLTRVAARGIPI---------ISEVEFAWQIRARNPISGQPAAWIGITGTNGKTSTT 111 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM L + +G +IGVP++ A + + + EL L T+ ++ Sbjct: 112 EMTAEILQAASLAAPAVG----NIGVPVSQAAVDENNQALVVELSSFQL----HYTYSLQ 163 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 A IT +A HL G E + KA +++ ++K + N DD Sbjct: 164 LEAAAITNLADDHLDWHGGFENYVADKARVYQHVKK--ALVYNADD 207 >gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia canadensis str. McKiel] gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia canadensis str. McKiel] Length = 455 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GK+TT +++ L+S Y G +IGVP A+ D + EL Sbjct: 107 IAVIGTNGKSTTTALISHILNSNGLDYPVAG----NIGVPALKAKNSKDG--YVIELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T IAV+ I P HL + AK++IF ++K +N D+ Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHKDMNGYIKAKSKIFNRMDKNSYAVINIDND 216 Query: 231 F 231 + Sbjct: 217 Y 217 >gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans DSM 11109] gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans DSM 11109] Length = 477 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 148/376 (39%), Gaps = 50/376 (13%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTL 153 L++ + A L + T IAI G+ GKTTT M L IG + +G L Sbjct: 92 LSRAQMLAMLMAGKTQIAIAGAHGKTTTTSMTASVLRQGGLAPSVVIGGIVDSLGGNAVL 151 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 D+ + E S + FL + PH+AV+T + HL ++ + I A+ Sbjct: 152 G----PGDYFVAEADES---DGSFL--VFNPHVAVVTNVDREHLDHYRDLAHIQEVFAKF 202 Query: 214 FEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 ++ G + YDD + LL L + S G + A Q+ S+ Sbjct: 203 IHQVQPGGAVVACYDDPNLRPLLYGVQGRLITYGLKSGGNYRAAHIQV----TGGGSSYT 258 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ + K ++ G+H N L + L D L+ + GR KR R Sbjct: 259 LLRQEKKLGQITIPLAGWHYVANSLAAAAVGFALGLDFRDIQAGLA----QTGRIKR-RF 313 Query: 333 AL---NQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379 + NQG T+ID+ Y +P ++A + ++Q PH R A+L D Sbjct: 314 EIKGENQG-VTVIDD-YGHHPTEIRATLDAMAQAFAGRRLVVAFQPHRFSRTQALLPDFF 371 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSETMDGL 433 ++ A++L L +I H L+ +D L R I V Y + L Sbjct: 372 DI--------FQQAQLLFLTDIYSAGERVIHGLSGRD-LYRGIREAGHTAVQYVGNREEL 422 Query: 434 FLFIQSSLVDGDVVVV 449 + + L GDV+V Sbjct: 423 APELWNYLRRGDVLVT 438 >gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus EPS] gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus EPS] Length = 517 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 146/385 (37%), Gaps = 69/385 (17%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + + F A G DG + A+ +GA +V + V + G FG DD + Sbjct: 25 DSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVDAFG------FGEDDRI 78 Query: 93 GALNKLAVAARLRSKA---------TIIAITGSVGKTTTKEMLTIALSSIKKT------- 136 + L A + A ++A+TG+ GKT+T L +LS+++ Sbjct: 79 ASYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRAMR 138 Query: 137 ------------YACIGSYNNHIGVPLTLA----------------RMPVDVDFGIFELG 168 A +G+ IGVP L R V+ FG + Sbjct: 139 PDGTTERSAPSPCAVMGTLG--IGVPPDLTYTGLTTPDPVMMQGELRALVERGFGACAIE 196 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLN 226 S +G + +AV T HL ++ AKAE+F GL +N Sbjct: 197 ASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAELFRWPGLRAA---VIN 253 Query: 227 YDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-S 280 DD L+ A AL + T+ + GK A R ++ V QG S Sbjct: 254 IDDMHGASLCANLVDAGIGALDVWTVSAGGKP--ARLVARDIGYDAQGLQFSVTEQGSVS 311 Query: 281 MEVVHHG-IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +E + G IG + N+L LG + L + A+ A + GR +R N Sbjct: 312 VERLSTGLIGQYNVANLLGVLGTLRALGLSLSRAVAACANLTSVPGRMERVSVGGN-APL 370 Query: 340 TLIDESYNANPASMKAAISVLSQIS 364 ++D Y P ++ A++ L ++ Sbjct: 371 AVVD--YAHTPDALDKALAGLRPLA 393 >gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AQ4037] gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AQ4037] Length = 437 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 54/266 (20%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++AITGS GK+T ++ + + T G +IGVP L + DVD + EL Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDVDLYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+ + +AK IF+ E +N DD Sbjct: 165 FQLET----TLSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVNRDD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 +++ + +FG S++ +++ G ++ HG Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255 Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335 +G H N L+ L ++ D A+ AL K G +RC A N Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310 Query: 336 QGFFTLIDESYNANPASMKAAISVLS 361 +G +++S N AS AA+S L Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGLE 335 >gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense MSR-1] Length = 112 Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L I G+ + I+ DSR + P FFA+ G DG FI AV +GA + Sbjct: 2 HNLADLIPGNHTA---NPLITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVV 58 Query: 68 VVVNTDMVASIGS 80 +V T A G+ Sbjct: 59 IVAETGTQAETGT 71 >gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 537 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 92/396 (23%), Positives = 170/396 (42%), Gaps = 47/396 (11%) Query: 2 NPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 P+ T L A+ G + G V G+ + ++ I + F A+ G G +F Sbjct: 24 QPVRTTVSALAALAGARVEAPTGTAEHVIVTGVDLRAQGIVEGDLFAALPGARAHGAEFA 83 Query: 58 LHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIA 112 A+ +GA ++ + +V+++GS +PV DD G L +L+ + R K +I Sbjct: 84 ADALARGATAILTDEAGFALVSALGS-DMPVLVHDDPRGVLGELSATIYGRPSEKMQVIG 142 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVP--LTLARMP-------VDV 160 ITG+ GKTTT ++ AL++ +T +G+ + VP LT P V + Sbjct: 143 ITGTSGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGRRVPSALTTPEAPQLHALFAVML 202 Query: 161 DFGIFELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + GI + M SH LG + VR + T ++ HL E+ +AKA +F Sbjct: 203 EQGIDTVVMEVSSHALSLGRV----DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLF 258 Query: 215 EGLEKTGT--IFLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKW--KQCS 267 + DD + + + +H++ + T+ + S+ A + Sbjct: 259 AADSSVHAQHAVICIDDVWGQRMADVARGAHSI-VTTVATTPDSEGAVWTAGPATVSPSG 317 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-VFHPKEGR 326 Q++ +G +++V G + N + + + + L D A++ ++ V P Sbjct: 318 SQTFALTTAEGTTLDVELRLPGQYNVANASLAVALCAALGVDPRDAVEGIAGVDVP---- 373 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 G+ R Q F ++D Y PA+++A I+ L + Sbjct: 374 GRVQRIDRGQDFLAVVD--YAHKPAAVEAVIATLRE 407 >gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus flagellatus KT] gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus flagellatus KT] Length = 453 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 39/334 (11%) Query: 102 ARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 A+ RS A +IAITG+ GK+T +T + I K +IG+P+ L + V Sbjct: 103 AQARSAHAKVIAITGANGKST----VTTLVGEICKAAGFKTVVAGNIGLPV-LDVINDAV 157 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D + EL L T+ + A + I+ H+ ++ ++ A+AKA IF + Sbjct: 158 DVYVLELSSFQLET----TYSLAADAATVLNISADHMDRYADMQAYANAKARIF---TRA 210 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGK 279 G LN DD++ + A+ A + + ++A DF L + ++W+ + Q K Sbjct: 211 GLQVLNADDAWSRGMAAEGVA---QLTFGLDAPRSAQDFGLL---HDAGEAWL-ARGQRK 263 Query: 280 SMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 M V I G H A N L L + ++L D A++AL F +G R + + Sbjct: 264 LMPVADLNITGLHNAANALAALALCTVLDIDEVVALQALRDF---KGLPHRVQWVADIDG 320 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + D+S N + AA+ HG R++ ++ G+ + +A+ Sbjct: 321 VSFYDDSKGTNVGATVAAL--------HGLNRKLVLIAGGDGKGQDFAALRAPVAK---- 368 Query: 399 YNISHVWLSGFHVLALKDALPRS-IHVHYSETMD 431 + V L G + DAL S + + Y +T++ Sbjct: 369 -HARAVVLIGRDAGVIADALQESGVLLEYGDTLE 401 >gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666] gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666] Length = 467 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 160/376 (42%), Gaps = 57/376 (15%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + + T+ IG N G AR+ + D+ + E Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTF-VIGGRLNSAGAN---ARLGLG-DYIVVEAD 162 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFL 225 S + FL L P +AV+T I H+ + + A+ K + L + GT L Sbjct: 163 ES---DASFLNLL--PVMAVVTNIDADHMETYG--HDFANLKKAFVDFLHRMPFYGTAIL 215 Query: 226 NYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS---- 280 DD + E++ S + T Y FG+ D Q+R + M Q ++ Sbjct: 216 CTDDPAVREIVPQVSCPI---TSYGFGE----DAQVRAVNVRPVGAQMHFTAQRRNGVTL 268 Query: 281 --MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----- 332 +EVV + G H N L + + L DTA+ KAL+ F +G G+R++ Sbjct: 269 PDLEVVLNLAGEHNVLNALSAIAVAVELNVP-DTAVQKALAEF---KGVGRRFQSYGDVP 324 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A G FT+I E Y +P + A ++ P GRR+ + F D Sbjct: 325 AKGGGHFTVI-EDYGHHPVEVAATLAAARGAFP---GRRLVLAFQPHRYTRTRDCFE-DF 379 Query: 393 AEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSL 441 +V+ + ++ V+ +G + D +L R++ V + +D + I + Sbjct: 380 VKVIGQADAVLLAEVYAAGETPIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNA 439 Query: 442 VDGDVVVVKSSNSCGF 457 + GDVV+ + S G Sbjct: 440 LGGDVVMCMGAGSIGL 455 >gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719] gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719] Length = 480 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 76/322 (23%), Positives = 137/322 (42%), Gaps = 45/322 (13%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA ++VV++ + VAS IPV ++L L R R Sbjct: 64 FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT +++ A + T+ IG L A + + Sbjct: 118 ---IAVAGTHGKTTTTSLISSVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL +P +AV+T I H++ + G ++ E L G Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224 Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282 + DD E+L + + ++G S++AD + +Q ++W V + + + ++ Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 V + G H N L T+ I + + ++ LS F +G G+R++ + G Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336 Query: 339 FTLIDESYNANPASMKAAISVL 360 L+D+ Y +P + A I + Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357 >gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ] gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ] Length = 488 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 80/366 (21%), Positives = 148/366 (40%), Gaps = 43/366 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ A + T+ IG N G L + + Sbjct: 121 IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLGS-------SRYLIA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H+ + G + + L G L Sbjct: 173 EADESDASFL-HL-QPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLCV 230 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVH 285 DD E+L L + ++G ++AD + +Q +++ V Q ++ +E+ Sbjct: 231 DDPVVREILP-----LVARPTITYGLGEDADIRAVDIRQAGMRTYFTVLRQERAPLEMSV 285 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTL 341 + G H N L T+ I D ++ LS F +G G+R++ + G L Sbjct: 286 NMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGF---QGVGRRFQVYGELQIEGGGVML 342 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D+ Y +P + A + + P RR+ ++ ++ + D ++LS N+ Sbjct: 343 VDD-YGHHPREVAAVLKAVRGGWPD---RRLVMVYQPHRFTR-TRDLYEDFVQILSDANV 397 Query: 402 ---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVK 450 V+ +G + D +L RSI Y E + ++ L GD+++ + Sbjct: 398 LLLMEVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGDILLCQ 457 Query: 451 SSNSCG 456 + G Sbjct: 458 GAGDIG 463 >gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 81/361 (22%), Positives = 147/361 (40%), Gaps = 44/361 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT + +A + + T+ IG LT + + G + + Sbjct: 123 IAIAGTHGKTTTTSLTASVLAAAGLDPTFV--------IGGKLTASGTNARLGKGEYIVA 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P ++V+T I H+ + +E++ A + + G FL Sbjct: 175 EADESDASFL-HLT-PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCA 232 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + K K ++G ++AD + + Q V+++ K E + Sbjct: 233 DSEHVRAILPKVS----KPYTTYGFGEDADIRAENIESDGAQMKFAVRVRMKGHEPLDFP 288 Query: 288 I-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 + G H N L +G+ AD + L F G G+R++ L G Sbjct: 289 VTLNLPGRHNVLNALAAIGVALECGADTAAIQQGLQNF---GGVGRRFQSYGEIPLKTGG 345 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 L+ + Y +P M A ++ PH RR+ VL ++ D A+VL+ Sbjct: 346 SALVIDDYGHHPTEMAATLAAARGAYPH---RRL-VLAFQPHRYTRTRDLFDDFAKVLNT 401 Query: 399 YN---ISHVWLSGFHVLALKD-ALPRSIHVH------YSETMDGL-FLFIQSSLVDGDVV 447 + ++ V+ +G L AL R++ + Y ++ + + + + L DGDV+ Sbjct: 402 VDTLVLTDVYAAGEDPLPEDSRALARNVRAYGKVEPLYCADVNEMPAMLLDTVLHDGDVL 461 Query: 448 V 448 + Sbjct: 462 L 462 >gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor obsidiansis OB47] gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 16/167 (9%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ L I++ +P + I I P HL+ + +E AK IFE +++ G Sbjct: 163 VLEISSFQLETIKYF----KPKVGCILNITPDHLNRHATMENYVKAKMRIFENIDEAGYT 218 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LNYD+ L L + + F K+KN K E++ + GK+ EV Sbjct: 219 VLNYDNGITRDL----IGLAKRNVIVFSKNKNH----FKNMVFVEENKIYFTFGGKTQEV 270 Query: 284 VHHG----IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + G H +N L + DT L F E R Sbjct: 271 MKKDEIFIPGEHNLENALAAIACTLPFGVAKDTIKDVLKTFKGVEHR 317 >gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda EIB202] gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda EIB202] gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda FL6-60] Length = 438 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + + +IGVP L+ + + + Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMARAAGWQVGVGGNIGVP-ALSLLKHECRLYVL 157 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 EL L T +R A I ++ H++ + G+++ +AK I+E T Sbjct: 158 ELSSFQLET----TSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENAR---TCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ L H + + SFG D+ L + + + W+ V+ L K Sbjct: 211 VNADDA----LTMPIHGADTRCV-SFGVDV-GDYHLNRQQG---EIWLRVRGEKILNTKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M++ G H N L L + + ++++AL+ F G R++ L Sbjct: 262 MQLT----GMHNYTNALAALALADAVGLPRASSLRALTTFR---GLAHRFQLVLEHSGVR 314 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA+ L Sbjct: 315 WINDSKATNVGSTEAALKGL 334 >gi|327184054|gb|AEA32501.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus GRL 1118] Length = 437 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T I I+G+ GKT+T +L+ L + T IG GVP D F ++E Sbjct: 108 TSIGISGTHGKTSTTSLLSHVLGEVAPTTYLIGDGRGK-GVP--------DSRFFVYE-- 156 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL + P ++T I H F ++ SA + +K +F+ Sbjct: 157 ---ADEYRRHFLAY--HPDYQIMTNIDFDHPDYFKDQDDYTSAFQSAADQTKK--ALFVW 209 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285 DD + LK Y++G + DFQ K+ + S V GK + E Sbjct: 210 GDDKRLQSLKTDIPK------YTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEFEI 263 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G H N + + +D L F +G +R+ + G +ID+ Sbjct: 264 HLFGDHSILNSTAVIAVAYTEKVPMDDIRDGLLTF---KGAKRRF-SEKDFGDIAVIDD- 318 Query: 346 YNANPASMKAAISVLSQISP 365 Y +P M+A I Q P Sbjct: 319 YAHHPTEMRATIQAARQKFP 338 >gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 441 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 38/259 (14%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++AITGS GK+T + LT +++ IG +IGVP L + D + + EL Sbjct: 112 VVAITGSNGKSTVTD-LTGVVANAAGVKTAIGG---NIGVP-ALELLDQDAELYVLELSS 166 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L L+ A ++ H+ + +E AK IF E+ T +N DD Sbjct: 167 FQLETTSSLSL----KAAAFLNLSEDHMDRYDDMEGYRQAKLRIF---EQAQTCIVNADD 219 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVVH 285 K + + F K+ +F ++ + C + + + L + +V Sbjct: 220 PATYPDKKDA------PLVEFSLEKSCEFHVKVVEGREYLCHQDAKI---LASDELSLV- 269 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQGFFTLI 342 G H N L+ L ++ D+ I AL ++ G +RC A N G + Sbjct: 270 ---GRHNVANALVVLALLEQAGVDISLGIDALKSYN-----GLTHRCQVVADNNG-VKWV 320 Query: 343 DESYNANPASMKAAISVLS 361 ++S N AS AA+S LS Sbjct: 321 NDSKATNVASTLAALSGLS 339 >gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine actinobacterium PHSC20C1] gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine actinobacterium PHSC20C1] Length = 508 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 96 NKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 ++ +A RLR K A IAITG+ GKTTT ++ LS+ +G +IG+P+ Sbjct: 110 TEIELAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAGFRAGAVG----NIGIPV 165 Query: 152 TLA-RMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 A R P DF + EL L G R + P +V IA HL A+A Sbjct: 166 LDAIRYPDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANA 225 Query: 210 KAEIF 214 KA ++ Sbjct: 226 KATVY 230 >gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. novicida GA99-3549] gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida GA99-3549] Length = 479 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 20/229 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ + +DSR + AF A+KG DG+ +I + KG LV+ ++ VF Sbjct: 23 IDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFEDQKC----VF 78 Query: 87 GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+ LA K II ITG+ GKT+ + L + +G+ N Sbjct: 79 YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 I P +D +S+ + + L V H +A+ + + Sbjct: 139 GI-YPDLKESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + HL ++ AKA++F+ ++ +N DD + + L + A Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRLCNMTQA 245 >gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827] gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827] Length = 472 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 99/440 (22%), Positives = 169/440 (38%), Gaps = 93/440 (21%) Query: 63 KGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV+T + A + L IPV ++L L R R IA+ G+ Sbjct: 62 EDASVVVVSTAISADNPEIQAAHELRIPVIRRAEMLAEL------MRYRHG---IAVAGT 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGE 174 GKTTT M I YA G P V+ G+ + +H LG Sbjct: 113 HGKTTTTAM-------ISGIYAQAGL-------------DPTFVNGGLVKSAGTHARLGS 152 Query: 175 IRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 R+L HL +P +AV+T I H+ + G E + L G Sbjct: 153 SRYLIAEADESDASFLHL-QPLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGR 211 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSM 281 + DD L + + + ++G S++AD ++ K++Q Q + + + + Sbjct: 212 AVMCIDDPVIRSLLPRVS----RYVTTYGFSEDADVRIVKYEQKGNQGFFTIARENMPEL 267 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN------ 335 VV + G H A N + + + D + AL F +G G+R+ N Sbjct: 268 TVVLNAPGRHNALNATAAVAVATEEGIDDQHILSALVEF---QGTGRRFDFLGNYSLRHV 324 Query: 336 ---QGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEMG 382 +G L+D+ Y +P + A I ++ PH R + D + Sbjct: 325 NGKEGEVMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYSRTRDLYDDFAHV- 382 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH------YSETMDGLFLF 436 LSQ +D+ +L +Y + G A +L R+I Y + + Sbjct: 383 -LSQ---VDVLLMLEVYPAGEKPVPG----ADSRSLCRTIRGRGQLDPIYVAEPEQVAQI 434 Query: 437 IQSSLVDGDVVVVKSSNSCG 456 + +L D D+++V+ + + G Sbjct: 435 LAQALEDNDLILVQGAGNIG 454 >gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 461 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 12/164 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++++ A R + +IAITGS GKTTT L L + + G+ + + LA Sbjct: 92 ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213 + + EL L + + R HIA++ I P HL + +E A AK I Sbjct: 152 PHA----YYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203 Query: 214 FEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKN 255 + E T F+++ DD LLK G + +S S + Sbjct: 204 TQNQEPTD-YFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSD 246 >gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 461 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 12/164 (7%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 ++++ A R + +IAITGS GKTTT L L + + G+ + + LA Sbjct: 92 ISEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTSLARQVALA 151 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEI 213 + + EL L + + R HIA++ I P HL + +E A AK I Sbjct: 152 PHA----YYVIELSSFQLDHM----YQFRAHIAILLNITPDHLDRYDHQMELYARAKMRI 203 Query: 214 FEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKN 255 + E T F+++ DD LLK G + +S S + Sbjct: 204 TQNQEPTD-YFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSD 246 >gi|251781817|ref|YP_002996119.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390446|dbj|BAH80905.1| UDP-N-acetylmuramate-L-alanine ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 443 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 40/279 (14%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + G+ GKT+T +L+ L +I T IG R + + +FE S Sbjct: 108 VAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE---SDE 155 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E F+ + P ++IT I H F+GI+++ SA + + ++K +F+ +D Sbjct: 156 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVRSAFNDYAKQVKK--ALFVYGEDQ-- 209 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291 EL K ++A IY +G + DF + + S V+ G+ + H G H Sbjct: 210 ELKKITANA----PIYYYGFEEGNDFVASDIARTTHGSDFTVKHDGQIIGRFHVPAYGRH 265 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANP 350 N + + + D++ + L F G +R+ L N+ T+I + + +P Sbjct: 266 NILNATAVIANLFVAGIDMELVAEHLKTF---SGVKRRFTEKLINE---TIIIDDFAHHP 319 Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379 + A I Q PH R IA+L D Sbjct: 320 TEIVATIDAARQKYPNKEIVAIFQPHTFTRTIALLDDFA 358 >gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] Length = 493 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 58/387 (14%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--------TDMV 75 Q + G+++DSR + F A+ G G +FI +A++ GA ++ + T++ Sbjct: 20 QATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAAGAQLAATELG 79 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK------------ 123 AS +L I DD AL + A T++A+TG+ GKT+ Sbjct: 80 ASEAALVIS----DDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQIWTLLGH 135 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM---SHLGEIRFLT 179 E + + + ++ ++ ++ P+TL R + G+ M SH + R L Sbjct: 136 EAINLGTTGVEGAWSAPLAHTTP--EPITLHRALAEAARQGVTHAAMEASSHGLDQRRLD 193 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAK 238 V A T HL + E+ +AKA +F L + T +N D + A Sbjct: 194 G-VTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDMAAI 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG---------IG 289 + A I + G+ + D L ++V G+ + +HHG IG Sbjct: 253 AEARNCPVI-TVGRD-SGDLHLGN---------IQVDSTGQVVCFMHHGTQYVRRLGLIG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A+N+++ +V D L GR + + G +D Y Sbjct: 302 SFQAENVMLAAALVIACGEDPQHVFDTLEHLSTVRGR-MQLAGTRDNGATVFVD--YAHT 358 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG 376 P ++ A+ L PH GR IA++G Sbjct: 359 PDAIATALKAL---RPHVVGRLIAIVG 382 >gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia peacockii str. Rustic] gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia peacockii str. Rustic] Length = 500 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S +IP+ D+L A +K IAITG+ GK+TT +++ L+S Y Sbjct: 85 SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IGV A+ D + EL L ++ T IAV+ I P HL Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AK++IF+ +++ +N D+ + Sbjct: 186 HQDMPCYIAAKSKIFDRMDQESYAVINIDNDY 217 >gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 477 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + + +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L DT +AL F G G+R+ + G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVAPDTIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 458 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 20/200 (10%) Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +KK Y + N IG+P T+ D F + E+ L I++ +P + I Sbjct: 132 LKKQYEDVVVCGN-IGLPFIDTIETSSEDTIF-VLEISSFQLETIKYF----KPKVGCIL 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I P HL+ +E AK IFE +++ G LNYD++ L L + F Sbjct: 186 NITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDL----IGLAKGNVIVF 241 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306 K+K F+ + E + +GK+ EV+ G H +N L + Sbjct: 242 SKTK-TQFENVVF---VENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISCTLPF 297 Query: 307 TADVDTAIKALSVFHPKEGR 326 + DT + L F E R Sbjct: 298 GIEKDTIEQVLKTFRGVEHR 317 >gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061] gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061] Length = 432 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 32/263 (12%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T +AITG+ GKT+T +L + S K T IG + +G + ++ +FE Sbjct: 102 TNVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGD-GSGMGKE--------NSEYFVFE-- 150 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H FS I+++ A + L+ I Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFSDIDDVFDAFQNM--ALQVKKAIIAC 203 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH- 285 DD ++AK + +Y +G ++ DFQ R + +E + +V ++ + + Sbjct: 204 GDDEHLPKIQAK-----VPVVY-YGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYI 257 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G H N L + + DV+ AL+ F G KR G LID+ Sbjct: 258 PAYGNHNVLNSLAVIALCHYEAIDVELIKGALTTF----GGVKRRFNEKVVGEQVLIDD- 312 Query: 346 YNANPASMKAAISVLSQISPHGE 368 Y +P ++ I Q P E Sbjct: 313 YAHHPTEIEVTIEAARQKYPDRE 335 >gi|34580522|ref|ZP_00142002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia sibirica 246] gi|28261907|gb|EAA25411.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia sibirica 246] Length = 500 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S +IP+ D+L A +K IAITG+ GK+TT +++ L+S Y Sbjct: 85 SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IGV A+ D + EL L ++ T IAV+ I P HL Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AK++IF+ +++ +N D+ + Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217 >gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 477 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 25/253 (9%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT + LS + T+ IG L A + G + + Sbjct: 118 IAVAGTHGKTTTTSLAAAVLSEGGLDPTFV--------IGGQLLAAGANAKLGGGQWLVA 169 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL + P +AVIT I HL N+ + I +A AE + L G L Sbjct: 170 EADESDGSFLR--LNPLMAVITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLALLCI 227 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD L K+ + + S+G S+NAD + Q + ++L +G + V Sbjct: 228 DDPEVAALAGKTP----RHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVTLA 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLI 342 G H N L I L +T +AL F G G+R+ + G + Sbjct: 284 LPGRHNVLNALAAAAIGWQLGVASETIARALENF---AGIGRRFNDLGEVTTSTGARVRV 340 Query: 343 DESYNANPASMKA 355 + Y +P ++A Sbjct: 341 VDDYGHHPRELEA 353 >gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003] gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003] Length = 467 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 148/370 (40%), Gaps = 46/370 (12%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + +A Q+R + M ++ +++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVEARDGKMHFTAMREDAAPLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------RCALNQG 337 + G H QN L + I + L +AL+ F+ R +RY +G Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQTRG 330 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +TL+D+ Y +P M A ++ P GRR+ + F D +VLS Sbjct: 331 AYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVKVLS 385 Query: 398 LYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDV 446 + ++ V+ +G + D AL R++ V + +T+D + + + + DGDV Sbjct: 386 TVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVRDGDV 445 Query: 447 VVVKSSNSCG 456 V+ + S G Sbjct: 446 VITMGAGSIG 455 >gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium intracellulare ATCC 13950] Length = 492 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 24/208 (11%) Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKS 239 P++AV+T I HL +F G A A ++F+ L G + + DD L ++ Sbjct: 183 PNVAVVTNIETDHL-DFYG---SAGAYVDVFDAFVDRLAPGGALVVCVDDPGAAALARRT 238 Query: 240 HALGIKTI-YSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGI-G 289 LGI+ + Y G S + L W+Q ++ ++QL + V+ + G Sbjct: 239 AELGIRVLRYGSGASLPGEPLAATLLSWQQQGTEAVAQIQLAPDLDPEQRPRVMRLSVPG 298 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYN 347 HMA N + L + A VD + L+ F EG +R+ G + + Y Sbjct: 299 RHMALNAMGALLAALEIGAPVDAVLDGLAGF---EGVRRRFELVGTAGNGQPVRVFDDYA 355 Query: 348 ANPASMKAAI-SVLSQISPHGEGRRIAV 374 +P + A + +V + + G+GR IAV Sbjct: 356 HHPTEIVATLAAVRTLLEQSGDGRSIAV 383 >gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 67/290 (23%), Positives = 115/290 (39%), Gaps = 31/290 (10%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +++ +IAI+G+ GKTTT M+ L SYN I V + ++ + G Sbjct: 98 MKNFKNVIAISGTHGKTTTTSMIGYILKK--------ASYNPTILVGAFVKQLGGNFVIG 149 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E + E P I VI I HL F I+ I ++ + + + +G + Sbjct: 150 SKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFL 209 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD + + +K H + + AD C++ + E ++ + E+ Sbjct: 210 VANCDDKNVKDVISKLHT----QVVCISTKEKADI-FAGNISCND-GYYEFDVKNNNDEI 263 Query: 284 VHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + H G+H N L + S L + T +ALS F G +R Sbjct: 264 LAHIKLNIPGFHNVYNSLAAFAVASKLGVESITIEQALSEFC---GASRRLEKVGEFDGI 320 Query: 340 TLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCE 380 L D+ Y +P +KA ++ L ++S PH R ++L + E Sbjct: 321 YLYDD-YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAE 369 >gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 459 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 63/390 (16%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P+ ++LG L + + T IA++G+ GKTTT M++ L + G Sbjct: 94 LPMLTRAELLGQL--------MTNYKTPIAVSGTHGKTTTTSMISHILLA--------GD 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNF 200 + I V L + ++ G ++ ++ E FL L P I +I + H+ F Sbjct: 138 TDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFL--PKIGIILNVEEDHMDFF 195 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +++I + L K GT+ +N + S +E + A + + ++G +AD+ Sbjct: 196 KDLDDIRHSFHRFAALLPKDGTLIINSEISQYEQIIAGLNC----NVITYGIHHDADY-- 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGI----------GYHMAQNMLMTLGIVSILTADV 310 + Q+ + S +++ HG G H N L + ++L D+ Sbjct: 250 ------TAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNVSNALSAIITGTLLGIDL 303 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-------- 362 + K L F G +R+ T+ID+ Y +P ++A +S Sbjct: 304 EKIKKGLLSF---TGTDRRFEYKGTLDGVTIIDD-YAHHPTEIEATLSAAQHYPHREIWC 359 Query: 363 -ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 PH R A + + L+ + H+ LA++ + + +S AL DA+ R Sbjct: 360 IFQPHTYTRTKAFFHEFAQA--LTLADHVILADIYAARETDTLGMSS---EALSDAI-RE 413 Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449 + +Y + D + F++ + GD+++ Sbjct: 414 LGGDSYYFSSFDEIKNFVKEKCIHGDMLIT 443 >gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Xenorhabdus nematophila ATCC 19061] gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Xenorhabdus nematophila ATCC 19061] Length = 491 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 70/315 (22%), Positives = 122/315 (38%), Gaps = 59/315 (18%) Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI------IAITGSVGKTTTKEML 126 D + S +IP + V ++ V R A + IAI G+ GKTTT M+ Sbjct: 78 DASVVVASTAIPADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAIAGTHGKTTTTAMI 137 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRFLT----- 179 + G+ P V+ G+ + +H LG R+L Sbjct: 138 S--------------------GIYAQAGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADE 177 Query: 180 ------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 HL +P +AV+T I H+ + G E + L G + DD Sbjct: 178 SDASFLHL-QPMVAVVTNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVV 236 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYH 291 + L + +G + + ++G S+ AD ++ ++Q Q + V QG + VV + G H Sbjct: 237 KELIPR---IG-RYVTTYGFSEEADVRITHYEQKGAQGFFTVSRQGFPDLHVVLNAPGCH 292 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---------CALNQGFFTLI 342 A N + + + + + +L+ F +G G+R+ +G L+ Sbjct: 293 NALNATAAVAVATEEGINDSAILASLAEF---QGTGRRFDFLGDFSLKYINKKEGSVMLV 349 Query: 343 DESYNANPASMKAAI 357 D+ Y +P + A I Sbjct: 350 DD-YGHHPTEVDATI 363 >gi|15892483|ref|NP_360197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia conorii str. Malish 7] gi|30316098|sp|Q92I60|MURD_RICCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|15619640|gb|AAL03098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia conorii str. Malish 7] Length = 500 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S +IP+ D+L A +K IAITG+ GK+TT +++ L+S Y Sbjct: 85 SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IGV A+ D + EL L ++ T IAV+ I P HL Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AK++IF+ +++ +N D+ + Sbjct: 186 HQDMTCYIAAKSKIFDRMDQESYAVINIDNDY 217 >gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia rickettsii str. Iowa] gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia rickettsii str. Iowa] Length = 500 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S +IP+ D+L A +K IAITG+ GK+TT +++ L+S Y Sbjct: 85 SFNIPITSDIDLLFAKSK---------NLKFIAITGTNGKSTTTALISHILNSSGLDYPV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IGV A+ D + EL L ++ T IAV+ I P HL Sbjct: 136 AG----NIGVSALQAK--ASKDGYVLELSSFQLDLVKTFT----AKIAVLLNITPDHLDR 185 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AK++IF+ +++ +N D+ + Sbjct: 186 HQDMPCYIAAKSKIFDRMDQESYAVINIDNDY 217 >gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 500 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 148/367 (40%), Gaps = 68/367 (18%) Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 K A +VVV+T + A + V+ LA R R IAI G+ GKTTT Sbjct: 81 KDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRFRHG---IAIAGTHGKTTT 137 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LGEIRFLT- 179 M +SSI YA G P V+ G+ + +H LG R+L Sbjct: 138 TAM----VSSI---YAEAGLD-------------PTFVNGGLVKAAGTHARLGSSRYLIA 177 Query: 180 ----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228 HL +P +AV+T I H+ + G E + L G + D Sbjct: 178 EADESDASFLHL-QPMVAVVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCID 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHG 287 D L + +G + I ++G S++AD ++ ++Q Q + Q K + V + Sbjct: 237 DPVVRELLPR---VG-RHITTYGFSEDADVRIESYQQNGAQGTFFICRQDKPRLAVTLNA 292 Query: 288 IGYHMAQNMLMTLGIVSILT----ADVDTAIKALSVFHPKEGRGKRY----RCAL----- 334 G H N L VS+ T AD D ++AL F +G G+R+ AL Sbjct: 293 PGRH---NALNAAAAVSVATEEGIADEDI-LRALEGF---QGTGRRFDFLGEYALENVNG 345 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 +G L+D+ Y +P + A I P+ RR+ ++ ++ + D A Sbjct: 346 KEGKAMLVDD-YGHHPTEVDATIKAARAGWPN---RRLVMIFQPHRFTR-TRDLYDDFAN 400 Query: 395 VLSLYNI 401 VLS ++ Sbjct: 401 VLSQVDV 407 >gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes DSM 20306] Length = 477 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 122/314 (38%), Gaps = 33/314 (10%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 N ++VA+ IPV D+L A L T + + G+ GKT+T M+ AL Sbjct: 85 NPELVAA-READIPVIRRSDLL---------AELMQDRTQVLLAGTHGKTSTTSMVVSAL 134 Query: 131 SSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + K + IG N G T A D D + E S +R+ P IAVI Sbjct: 135 QAAGKDPSFAIGGQLNRAG---TNAHHGKD-DIFVAEADESDASLLRY-----DPDIAVI 185 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I P HL F E + E ++ GT+ + +D L ++ G++ + Sbjct: 186 TNIEPDHLDYFGSAEAYFQVFDDFAERIKPNGTLIVCVEDEHAAELGRRAVESGVQVV-G 244 Query: 250 FGKSK--------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G SK ++ + E + + V+L + G+HM N L Sbjct: 245 YGSSKALAQHPDITPGAEILTEEVGRETTAVTVKLPSGEVSYDLQIPGHHMVLNSAAALI 304 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI-SVL 360 + A + LS F G +R+ G + + Y +P + A + + Sbjct: 305 AGELAGAKAQALAEGLSDF---TGVRRRFEYRGTAGDNIRVYDDYAHHPTEVAAVLGAAR 361 Query: 361 SQISPHGEGRRIAV 374 +++ G G R+ V Sbjct: 362 EKVTAEGLGGRVVV 375 >gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM 44928] gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM 44928] Length = 469 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%) Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VVV+TD+ A G++ + V L L++ + A L +AI G+ GKTTT Sbjct: 75 GVDTVVVSTDIPA--GNIEV-VEAKARGLRLLHRASALASLMPGYRSVAIAGTHGKTTTS 131 Query: 124 EMLTIAL--SSIKKTYACIGSY-----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 M+T+AL + + ++ G + H G L + D G F Sbjct: 132 SMVTVALRHAGLDPSFVIGGEIGETGESGHAGSGDVLVAEADESD-GTF----------- 179 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELL 235 TH RP I+VIT I H +F+ + ++ A+ + F G LE GT+ DD + Sbjct: 180 --THY-RPDISVITNIELDHPDHFADVAQV-RAEFQDFAGRLEPGGTLVCYADDPAARTI 235 Query: 236 KAKSHALGIKTIYSFGKSKNADFQL 260 ++ A G++ + ++G + D ++ Sbjct: 236 AERTAARGVR-VLTYGAGADVDIRV 259 >gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus 307] gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus 307] Length = 465 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 13/192 (6%) Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++T I P H+ ++ IE + + + + G DDS + L K + + Sbjct: 181 IAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLVGK---ITDR 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHMAQNMLMTLGI 302 + ++G + AD + + +V LQ + + + + G H N L + + Sbjct: 238 RVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKDCALPMPGDHNVSNALSAIAV 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + AL+ F +G G+R+ G T+ID+ Y +P + A + Q Sbjct: 298 ARYLGMKAEEIRAALAAF---KGVGRRFTRVGEVGGVTIIDD-YGHHPTEISAVLKAARQ 353 Query: 363 ISPHGEGRRIAV 374 S +GR +AV Sbjct: 354 AS---DGRILAV 362 >gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga lettingae TMO] gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga lettingae TMO] Length = 430 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 32/219 (14%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +IA+TGS GKTT+ ++L+ + +YAC +IG P + + + E+ Sbjct: 100 VIAVTGSNGKTTSCKLLSFVFQKLGLDSYAC-----GNIGTPAADV-LGFKTKYLVLEIS 153 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 L F + ++ I V+ I P HL +E A +K ++ E KTG I+ D Sbjct: 154 SFQL----FWSKMLHIDIGVVLNIQPNHLDWHPSLEHYAKSKLKLLE-FSKTG-IYNCSD 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + KS+ + ++RK + +GK + + Sbjct: 208 QNIMKFISEKSNLCAFDPL-----------KIRKVDDG-------IVYEGKYYTFKNDFL 249 Query: 289 GYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 H QN+ L I S++ D+ ++ L F P + R Sbjct: 250 KTHQNLQNLSAILKIFSVMNFDLKQVLEILEDFKPLKHR 288 >gi|22127499|ref|NP_670922.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM 10] gi|45443360|ref|NP_994899.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809536|ref|YP_653452.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua] gi|108810587|ref|YP_646354.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516] gi|145600341|ref|YP_001164417.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides F] gi|162418996|ref|YP_001607294.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Angola] gi|21960596|gb|AAM87173.1|AE013964_9 UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis KIM 10] gi|45438229|gb|AAS63776.1| UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774235|gb|ABG16754.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516] gi|108781449|gb|ABG15507.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua] gi|145212037|gb|ABP41444.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides F] gi|162351811|gb|ABX85759.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Angola] gi|262360674|gb|ACY57395.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis D106004] Length = 507 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 57/315 (18%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT M LSSI YA G P V+ G+ + + Sbjct: 138 IAVAGTHGKTTTTAM----LSSI---YAEAGLD-------------PTFVNGGLVKAAGT 177 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 178 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD Q+ ++Q Q ++ Sbjct: 237 LPFYGRAVMCIDDPVVRELLPR---VG-RHITTYGFSDDADVQIASYRQEGPQGHFTLRR 292 Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 Q K + EV + G H A N + + + + + ++AL F +G G+R+ N Sbjct: 293 QDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGF---QGTGRRFDFLGN 349 Query: 336 ---------QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +G L+D+ Y +P + A I P +RI +L ++ Sbjct: 350 FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWP---DKRIVMLFQPHRYTR-TR 404 Query: 387 SFHIDLAEVLSLYNI 401 + D A VLS ++ Sbjct: 405 DLYDDFANVLSQVDV 419 >gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] Length = 481 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 QGH + + IS DSR + FFA KG + +F++ A+ +G G V D Sbjct: 23 QGHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK-KEFLISAISQGLGWYVAEKDY 80 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 + IPV V+D+ A++ +A+ + K I+A TG+ GKTT Sbjct: 81 -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124 >gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65] gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65] Length = 485 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 29/266 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ G+ GKTTT ++ L+ K + IG LT A + + + + Sbjct: 122 IAVAGTHGKTTTTSLVASILAEGDKDPTFV------IGGRLTSAGTNAQLGGSRYLVAEA 175 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG-TIFLNYD 228 + FL HL +P ++++T I H+ + G + E L G + D Sbjct: 176 DESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFNRVKKTFIEFLHNLPFYGLAVLCIED 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHH 286 ++ E+L S + + ++G S +AD+ ++ KQ + V+ G K +++ Sbjct: 234 ETIREILPEVS-----RPVVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQIRLR 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES- 345 G H N L + + + D I+AL F +G G+R++ G + L D+S Sbjct: 289 MPGRHNVLNALSAIAVATDEGIADDAIIRALEKF---QGVGRRFQIC---GEYPLQDDSV 342 Query: 346 -----YNANPASMKAAISVLSQISPH 366 Y +P + I + + P Sbjct: 343 MLVDDYGHHPTEVAVTIDAIRKGWPE 368 >gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 462 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 16/202 (7%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVD 159 ARL IA+ G+ GKTTT ML ++L+++ + +YA G + P + A Sbjct: 104 ARLMDGLRPIAVAGTHGKTTTTSMLAVSLTALGREPSYAIGGDLD----APGSNAL---- 155 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LE 218 G E+ ++ E H P +A++ + H +N++ ++EI + E F G + Sbjct: 156 --HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYESF-ETFAGRVV 212 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 GT+ ++ D L + A ++T+ ++G +++AD ++ S + V+L G Sbjct: 213 PGGTLVVSADHEGARELT-RRLAKTVRTV-TYGAAEDADVRVLSVVPHGLTSEVTVELDG 270 Query: 279 KSMEVVHHGIGYHMAQNMLMTL 300 + G H A N + L Sbjct: 271 APLTFTVSVPGRHYAHNAVAAL 292 >gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] Length = 584 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 66/304 (21%) Query: 11 LQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKG--PHYDGHDFILHAVQKGAGL 67 + A+Q S+ +P Q F +DSR + EAF +K P+ L+ A Sbjct: 58 MTAVQLDSVVNIPFQQFC----LDSRQLIRNEAFALLKSHTPNCQKSRDYLYQAANNAAF 113 Query: 68 VVVNTDMVASIGSLSIP-----------------------------VFGVDDVLGALNKL 98 ++ D +A I + +IP V + D LG+L Sbjct: 114 ILSEIDPLALIATGNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSL--- 170 Query: 99 AVAARLRSK-----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN-HIGVPLT 152 + ARL+ + T++A+TG+ GKTT +++ + A +G+ N +G + Sbjct: 171 -IQARLQYQQRVTLPTVVAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQ 229 Query: 153 LARMPVD---VDFGIFELGM-----------SH-LGEIRFLTHLVRPHIAVITTIAPAHL 197 + D V + ++G SH L + R V +A+ T ++ HL Sbjct: 230 ASHTTGDTLAVQQFLHQMGKEGAELLALEASSHGLDQQRLQGMPVS--VAIYTNLSRDHL 287 Query: 198 SNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSK 254 + + E A+AKA++F+ +N DD + +++ +HA +K YS SK Sbjct: 288 DYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSK 347 Query: 255 NADF 258 A F Sbjct: 348 TATF 351 >gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 460 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V + + + ++ +AA++ + A II +TGS GKTTT M+T L+ +K + N Sbjct: 92 AVSEKMPIITEVELAAQM-TDAEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGN-- 148 Query: 147 IGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV T + D I EL L I+ L PH+AV+T I HL + Sbjct: 149 IGVSATETALKSTADDTIVMELSSFMLLGIKKL----HPHVAVLTNIFSNHLDYHKTRKN 204 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AK I +N+D + L +S A Sbjct: 205 YVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSKA 240 >gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. novicida GA99-3549] gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3549] Length = 451 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 33/287 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---LHAVQKGAGLV---------VVNTDM 74 V GI + + +IA + G H G+D + L A + G+V V N D+ Sbjct: 10 VGGIGVSALAIAAKRL-----GAHVAGYDSVANKLTAKLEALGIVIFTSPSGVDVANFDI 64 Query: 75 VASIGSL--SIPVFGVDDVLG--ALNK-LAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V ++ S P+ LG L + + +A ++ + +AITG+ GKTTT +L Sbjct: 65 VVYSSAILSSHPLLSQARSLGIQCLQRAMFLAVLMKDFSYSLAITGTHGKTTTSSVLATL 124 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-SHLGEIRFLTHLVRPHIAV 188 L + K + + +G + A + V+ G +L + + + FL + P + + Sbjct: 125 LCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIEADESDASFL--FLNPQVVI 175 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I H++ ++ + F E +I+L DD L AK + K + Sbjct: 176 ITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSDKNVT 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S+G S NAD Q+ + E + +++ +G + G + QN Sbjct: 235 SYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQN 281 >gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] Length = 554 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 75/338 (22%), Positives = 122/338 (36%), Gaps = 48/338 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR + + F A G DG F+ A+ +GA +V+ +A+ +G+D Sbjct: 29 LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFAD----AYGLD 84 Query: 90 DVLGALNKLAVAARLRSKAT-----------------IIAITGSVGKTTTKEMLTIALSS 132 A A A KA ++AITG+ GKT+T L ALS+ Sbjct: 85 ASARAERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQALSA 144 Query: 133 IKKTYAC-----------IGSYNNHIGVPLTLA---------RMPVDVDFGIFELGMSHL 172 ++ T C + +G LT R D F L S + Sbjct: 145 LRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEASSI 204 Query: 173 GEI-RFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G + R L TH+ +A+ T HL + AKA +FE + + D Sbjct: 205 GIVERRLDGTHI---RVALFTNFTQDHLDYHGSMAAYWQAKAALFEWPQLPAAVVNVDDP 261 Query: 230 SFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 EL + + G+ S A + + + E+ ++ + + Sbjct: 262 QGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTL 321 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 G + N+L + + L + A+ A HP GR Sbjct: 322 GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGR 359 >gi|322834422|ref|YP_004214449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602] gi|321169623|gb|ADW75322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602] Length = 438 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ I+AITGS GK+T +T + + K +IG+P+ L + + D + Sbjct: 103 TQTPIVAITGSNGKST----VTTLVGEMAKAAGWRVGVGGNIGLPV-LTMLDHEYDLFVL 157 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 EL L TH + A I + H+ + G+++ +AK +++ E Sbjct: 158 ELSSFQLET----THSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLKVY---ENAALCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ K SFG D+ L + + + W+ V+ L + Sbjct: 211 VNADDALTMPVRGAD-----KRCVSFGVDV-GDYHLTRQQ---DDIWLRVRGEKVLNTRE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + + +++KAL+ F G R++ A Sbjct: 262 MPLT----GRHNYTNALAALALADAVGIPHASSLKALTTF---TGLAHRFQVAWQHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H EG +LG + + S L L N Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVEGTLHLLLGGDGKSADFSP-----LTRYLQGDN 364 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + ++ G L D P + ETM+ I + +V GD+V++ S +C Sbjct: 365 L-RIYCFGRDGAELADLRPDVSSLF--ETMEQAMRDISTRVVSGDMVLL--SPAC 414 >gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC 27755] gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC 27755] Length = 515 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 35/301 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++G+ GKTTT M++ L + G + I V L + ++ G E+ ++ Sbjct: 170 IAVSGTHGKTTTTSMISHILLA--------GEMDPTISVGGILKAIGGNIRVGNSEIFVT 221 Query: 171 HLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 E FL+ P I+VI I HL F +E+I ++ + L K GT+ +N D Sbjct: 222 EACEYTNSFLSFF--PKISVILNIDEDHLDFFKDLEDIRNSFHRFAKLLPKDGTLVINGD 279 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHH 286 + L + L K + ++G + +A + + E S+ V+ G+ ++ + Sbjct: 280 ---IDRLDEITGDLDCKLV-TYGTNPSATYHAANVTHDELGEASFDLVK-NGEFVDRISL 334 Query: 287 GI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G H N L L + +L +V A K L FH G +R+ T+ID+ Sbjct: 335 SVSGDHNVSNALAALAVADLLDVNVSVAKKGLKEFH---GTDRRFEYKGETNGVTIIDD- 390 Query: 346 YNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 Y +P + A ++ + PH R A+ + E LS + H+ +A++ Sbjct: 391 YAHHPTEIAATLTAATHYPHREIWCIFQPHTYTRTKALFPEFVEA--LSHTDHVIMADIY 448 Query: 397 S 397 + Sbjct: 449 A 449 >gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1] gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1] Length = 437 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 42/296 (14%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T +A+TG+ GKT+T +L + IK T IG GVP ++ +FE Sbjct: 102 TSVAVTGAHGKTSTTGLLAHVMHEIKPTSYLIGDGTGK-GVP--------GAEYFVFE-- 150 Query: 169 MSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 E R FL++ P A++T I H ++ I+++ SA E+ L+ I Sbjct: 151 ---ACEYRRHFLSY--HPDYAIMTNIDFDHPDYYANIDDVFSAFQEM--ALQVKKGIIAY 203 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283 DD + ++AK + ++ +G + DFQ R + + +V ++ + E+ Sbjct: 204 GDDEQLQKIQAK-----VPVVF-YGFEEGNDFQARNIVTEPQGTKFDVVVRNNFYGTFEI 257 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-FHPKEGRGKRYRCALNQGFFTLI 342 G N+L LG++++ + I+ +V H K G + R + +I Sbjct: 258 PSFG-----NHNVLNALGVIALCQYE---GIEKEAVETHLKTFHGVKRRFTEKEIGTQII 309 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + Y +P +KA I + P E +AV +Q+F + AE L+L Sbjct: 310 IDDYAHHPTEIKATIDAARKKYP--ERELVAVF--QPHTFSRTQAFLTEFAESLNL 361 >gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citromicrobium bathyomarinum JL354] Length = 495 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 150/372 (40%), Gaps = 38/372 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G +ID R +AP F A G +G DFI AV GA VVV G+L I Sbjct: 21 IVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAGAIAVVVRPGAKVE-GALQI-- 77 Query: 86 FGVDDV-LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 D+ A ++A + TI+A+TG+ GKT+T EM + + A IG+ Sbjct: 78 --ADEAPRKAFAEIAAQYFTPAPDTIVAVTGTNGKTSTVEMTRQLWRMLGERAASIGTLG 135 Query: 144 ----NNHIGVPLTLARMPVDVDF-----GIFELGMSHL-------GEIRFLTHLVRPHIA 187 + + LT P V F G+ G++H+ G ++ + R Sbjct: 136 VTTPDESVSTGLT---TPDIVTFHANLSGLAREGVTHIAYEASSHGLDQYRNYGARVVAG 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA--LGIK 245 T + HL ++ AK +F+ + G + + D KA++ A G++ Sbjct: 193 AFTNFSRDHLDYHESMQAYFEAKMRLFDEVIADGGTAVIWADGGEWADKARTRAEKRGLR 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I++ G + D L + +E+ G + IG + A N L + Sbjct: 253 -IFTVGPQGD-DICLIGQEPSQLGQSVEIARNGDRRTIRLPLIGQYQAANALTAAALALA 310 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQIS 364 AD A+ P RG+ R + Q G +D Y P +++AAI+ L Sbjct: 311 SGADEARLWDAVGRLQPV--RGRLERAVITQSGAPVYVD--YAHTPDALEAAIAAL---R 363 Query: 365 PHGEGRRIAVLG 376 PH GR I V G Sbjct: 364 PHVNGRLIVVFG 375 >gi|269795576|ref|YP_003315031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter keddieii DSM 10542] gi|269097761|gb|ACZ22197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter keddieii DSM 10542] Length = 487 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 15/126 (11%) Query: 96 NKLAVAARLR-------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +++ +A RLR A +A+TG+ GKTTT EML L + + A +G ++G Sbjct: 83 SEVELAWRLRVPTASTGQPAPWLALTGTNGKTTTVEMLLSVLEADGRRAAAVG----NVG 138 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 PL A + +++ EL L T + P + + +A HL EE A+ Sbjct: 139 RPLVEAVVDPEIEVLAIELSSFQL----HFTSSMSPLVGAVLNVAADHLDWHGTFEEYAA 194 Query: 209 AKAEIF 214 AK ++F Sbjct: 195 AKGKVF 200 >gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa] gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa] Length = 487 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 48/337 (14%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA ++VV++ + VAS IPV ++L L R R Sbjct: 71 FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 124 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT ++ A + T+ IG N G L + Sbjct: 125 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLG-------ASRY 173 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL +P +AV+T I H++ + G ++ E L G Sbjct: 174 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 231 Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282 + DD E+L + + ++G S++AD + +Q ++W V + + + ++ Sbjct: 232 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 286 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 V + G H N L T+ I + + ++ LS F +G G+R++ + G Sbjct: 287 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 343 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+D+ Y +P + A I + P RR+ ++ Sbjct: 344 VMLVDD-YGHHPREVAAVIKAIRGGWPE---RRLVMV 376 >gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter tengcongensis MB4] gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium pacificum DSM 12653] gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter tengcongensis MB4] gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium pacificum DSM 12653] Length = 450 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 16/165 (9%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVP 150 L L ++ +A RL SKA I AITG+ GKTTT +L + ++ +K Y +IG P Sbjct: 93 LEILGEVELAYRL-SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVA-----GNIGYP 146 Query: 151 LTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 L A + D + E+ L ++ RP I+ I I P HL E A+ Sbjct: 147 LIYAALEAGPNDHIVAEISSFQLETVKEF----RPKISCIINITPDHLDRHKTFENYANI 202 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 K IFE + + LNYDD LK ++ A ++ F + K Sbjct: 203 KGRIFENQREEEYVVLNYDDPVTWGLKERAKA----KVFPFSRKK 243 >gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7] gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7] Length = 468 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 107/438 (24%), Positives = 179/438 (40%), Gaps = 73/438 (16%) Query: 53 GHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 GHD A +GAG +V +T + A + + IPV +L L +L Sbjct: 56 GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRALMLAELMRLKRG----- 107 Query: 107 KATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 IA+ G+ GKTTT ++ +A + T+ IG N G L + G Sbjct: 108 ----IAVAGTHGKTTTTSLVASVLAAGDLDPTF-VIGGRLNSAGANARLGQ-------GE 155 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 F + + + FL L P + +IT I H+ + + + SA E + L GT Sbjct: 156 FIVVEADESDASFLNLL--PVMCIITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTA 213 Query: 224 FLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKS 280 L DD + E++ S + + ++G A Q+R ++ + M +VQ QG + Sbjct: 214 VLCSDDPNVREIIPFVS-----RPVTTYGIESEA--QVRALNVRADGTLMRFDVQRQGAT 266 Query: 281 -----MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---- 331 M V + G+H N L + + + L +++L+ F+ G G+R+ Sbjct: 267 GALPPMTVSLNLPGHHNVLNALAAIAVATELGVPDAAIVESLAAFN---GVGRRFTQVGD 323 Query: 332 --CALNQ--GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 A Q G +T+ID+ Y +P M A ++ P RRI + Sbjct: 324 FPVAAQQGGGTYTVIDD-YGHHPVEMAATLAAARGAWPD---RRIVLAFQPHRYTRTRDC 379 Query: 388 FHIDLAEVLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLF 436 F D +L + ++ V+ +G L D AL R++ V + E + L Sbjct: 380 FE-DFVRILGQADAVLLTDVYPAGEQPLIAADGRALTRALRVAGKVEPVFVEDVAELPQT 438 Query: 437 IQSSLVDGDVVVVKSSNS 454 I+ +GDVVV+ + S Sbjct: 439 IRDFARNGDVVVIMGAGS 456 >gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] Length = 496 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 34/284 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGIS---IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L++ G I I+ F + S +++++ F IKG ++D HD I V+ GA Sbjct: 3 LIENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKE 124 VVV +I I V VD AL +L+ A K II ITG+ GKTT+ Sbjct: 63 AVVVE----RNIKRDDICVIKVDSTRAALARLSAAYFGHPAKKMKIIGITGTKGKTTSSY 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV--PLTLARMPVD----------VDFGIFELGMSHL 172 ML L K IG+ +G TL P +D G + M Sbjct: 119 MLKKLLEQNAKV-GLIGTNGITVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEVS 177 Query: 173 GEIRFLTHL--VRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + L + ++ +I + T I+P H+ E K+ F+ EKT +N D Sbjct: 178 SQAVMLKRIEGIKFYIGIFTNISPDHIGPDEHKDFTEYLMYKSLFFKQCEKT---VVNAD 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 D + +S + Y FGK DF + S++ ++ Sbjct: 235 DEHSAYILEQSTS---DEKYEFGKC--GDFVINNINYISKKDFL 273 >gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima DSM 10411] gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima DSM 10411] Length = 435 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +K IIAITG+ GK+TT ++ L K G+Y G+PL+ A + + ++ + Sbjct: 91 AKGKIIAITGTNGKSTTVALVERILKGASKRVIACGNY----GLPLSEA-IYENAEYYVV 145 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E L F+ +P+IA I IA HLS ++ AK +IF+ + Sbjct: 146 EASSYQL---EFIDKF-KPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFKNQLEDDFFIK 201 Query: 226 NYDDSF 231 N DS+ Sbjct: 202 NDSDSY 207 >gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp. MED152] gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp. MED152] Length = 461 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%) Query: 82 SIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S+P+ VD+ + ++++ AA +KATI+ ITGS GKTTT + L + Sbjct: 92 SVPLVKKLVDNNIPVISEIEFAANF-TKATIVGITGSNGKTTTTLLTHHILKNANLDVGA 150 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G +IG L + + + E+ L I RPHIA++T I P HL Sbjct: 151 AG----NIGDSFALQVAEKNYNNYVLEISSFQLDGITNF----RPHIAILTNITPDHLDR 202 Query: 200 FS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + ++K I + E+T + + DD Sbjct: 203 YDYDFQNYINSKFRITKNQEETDFLIYDADDD 234 >gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes 130Z] gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes 130Z] Length = 476 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 57/384 (14%) Query: 111 IAITGSVGKTTTKEMLTIALSS--IKKTYACIG-----SYNNHIGVPLTLARMPVDVDFG 163 IAI G+ GKTTT M+++ + + T+ G N ++G L + D Sbjct: 121 IAIAGTHGKTTTTAMISMIYTQAGLDPTFVNGGLVKSAGTNAYLGASRYLIAEADESDAS 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222 L +P ++V+T I P H+ + G +E+ L G Sbjct: 181 FLHL---------------QPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGL 225 Query: 223 IFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKS 280 + DD+ EL+ + + ++G S+ AD+++ ++Q Q +V G+ Sbjct: 226 AVMCADDAVLMELVPQVG-----RQVITYGFSEKADYRIENYEQTGFQGHYDVITPAGER 280 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQ 336 + ++ + G H A N L + D + AL+ F +G G+R+ Sbjct: 281 IHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADF---QGAGRRFDQLGEFIRPN 337 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEV 395 G L+D+ Y +P + I Q + G E RR+ ++ F D V Sbjct: 338 GKVMLVDD-YGHHPTEVGVTI----QAARSGWENRRVVMVFQPHRYSRTRDLFD-DFVRV 391 Query: 396 LSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDG 444 LS ++ V+ +G +A D+ + + +D +F+ + + DG Sbjct: 392 LSQVDVLILLDVYPAGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDG 451 Query: 445 DVVVVKSSNSCGFYRLINLLLEEF 468 D+++ + + + RL L+E + Sbjct: 452 DLILAQGAGNVS--RLSRNLVEHW 473 >gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] Length = 507 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 149/368 (40%), Gaps = 39/368 (10%) Query: 21 IVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + P+G +++ + S ++AP F + G DGH F A+ +GA V + + Sbjct: 20 LSPRGDNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFAASALDRGA--VALCVERALD 77 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + + V V +G L + + + T + ITG+ GK+TT ML L S Sbjct: 78 LPVPQVVVPDVRRFMGRLAAV-LYGEPAQRLTHVGITGTNGKSTTTYMLRSVLQSAGVKT 136 Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +G+ H G + LARM V G + S G + Sbjct: 137 GLLGTIVYHDGDKELEADRTTPENTDIQSFLARM-VSNGCGACVMETSSHGLEQGRIEGC 195 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEG-LEKTGTIFLNYDDSF-FELLKAKS 239 R T ++P HL ++ G EE AK +FE ++ + N DD++ LL+A Sbjct: 196 RFDRGGFTNLSPEHL-DYHGTEEAYFQAKKLLFEEYMKPSWKGASNRDDAYGRRLLEAYP 254 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGKSMEVVHHG-IGYHMAQN 295 L Y+ + + D L + + + M + L G+ + VH IG + +N Sbjct: 255 ENL---VGYTREEPRPGD--LGATLKSFDLTGMCLDLTLPDGRVLPEVHLPLIGTYNVEN 309 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + L D +T + L+ GR +RY +L G +ID Y P ++ Sbjct: 310 ALACAALARTLDIDGETIRRGLASMPQVPGRLERY--SLPGGVTCVID--YAHTPDGLEK 365 Query: 356 AISVLSQI 363 +S L + Sbjct: 366 VLSTLRHV 373 >gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] Length = 492 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 150/378 (39%), Gaps = 48/378 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F A+ G DG F A GA V A + + + Sbjct: 27 VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPADLPEATAWIE 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 V D AL A R T++A+TG+ GK++ + + LS + + A +G+ Sbjct: 87 -VADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGTVGIV 145 Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 + + + TLAR+ VD GI +L M SH E R L V A Sbjct: 146 TNRGAEYGSLTTPDPVTLHETLARL---VDEGITDLAMEASSHGIEQRRLDG-VELTAAA 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245 T + HL IE+ AK +F L G +N D ++ E + + A G I+ Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAIR 261 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T + DF +R + +E + L GK V +G +N L+ G+ Sbjct: 262 TT-----GRGGDF-IRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLA 315 Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 A D A VF EG G+ R G L+D Y P +++ Sbjct: 316 LATPAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366 Query: 359 VLSQISPHGEGRRIAVLG 376 VLS + P GR + V G Sbjct: 367 VLSALRPFASGRLVVVFG 384 >gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum reducens MI-1] gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfotomaculum reducens MI-1] Length = 486 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 117/272 (43%), Gaps = 27/272 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LLQAI +I P+ + GI DSR A F A+KG DGH +I +AV G Sbjct: 3 LKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV T++V G + V L AL K +++ +TG+ GKTTT ++ Sbjct: 63 AVVYETEIVLPTGVTGVQVSDSRKAL-ALMADQFYGHPSKKLSMVGVTGTNGKTTTTHLI 121 Query: 127 TIALSSIKKTYACIGSYNNHIG---------VPLT------LARMPVDVDFGIFELGMSH 171 + IG+ +N IG P + LA+M +D G+ + M Sbjct: 122 AAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQM---LDEGVKGVAMEV 178 Query: 172 LGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + V +AV T I HL + +EE +AKA++F +N DD Sbjct: 179 SSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLF--TTDIQYAIINADD 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E LK S +Y++G + AD + + Sbjct: 237 PAAEELKKISRG----KVYTYGIDQAADIRAK 264 >gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] Length = 457 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 97/414 (23%), Positives = 169/414 (40%), Gaps = 69/414 (16%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S+ + F AI+G + DGH F+ A+++GA V V D +G + Sbjct: 3 VKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKD----VGIEDPRIV 58 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L +L R K +I +TG+ GKTTT +L + IG+ Sbjct: 59 KVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGLIGTIY 118 Query: 145 NHIGVPL----------------TLARMPVD------VDFGIFELGMSHLGEIRFLTHLV 182 +G + TL M D + L + +F T Sbjct: 119 YRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKFFT--- 175 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + T ++ HL +E SAK +F + ++ +N DD + + + + + Sbjct: 176 ----TIFTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSV-INADDPYGKRIVS---VV 227 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM---LMT 299 G K ++GK D ++ ++ E S +EV+ +GK H G A N+ ++T Sbjct: 228 G-KRARTYGKE--GDLRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILT 284 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I V+ +K + V GR + YR G ++D Y P +++ + Sbjct: 285 AFLRGIDPQVVEEGVKDVRV----PGRFETYR---KDGKTVIVD--YAHTPDALEKLLRT 335 Query: 360 LSQISPHGEGRRIAVLG-----DMCE---MGELSQSFHIDLAEVLSLYNISHVW 405 I+ GR + V G D + MGE++Q++ A+V+ L + + W Sbjct: 336 ARGIT---RGRLLVVFGAGGNRDRTKRPLMGEVAQNW----ADVIVLTSDNPRW 382 >gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 493 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 97/438 (22%), Positives = 179/438 (40%), Gaps = 87/438 (19%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 +GA +VVV N ++VA+ + IPV ++L L R R IA+ G Sbjct: 77 QGASVVVVSSAIPENNVEIVAARAA-RIPVIRRAEMLAEL------MRYRHG---IAVAG 126 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LG 173 + GKTTT M + YA G P V+ G+ + H LG Sbjct: 127 THGKTTTTAM-------VASIYADAGLD-------------PTFVNGGLVKAAGVHARLG 166 Query: 174 EIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221 R+L HL +P +A++T I H+ + G E + L G Sbjct: 167 CSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYG 225 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280 + DD+ + + +G + I ++G S +AD Q++ ++Q Q + GK+ Sbjct: 226 RAVMCIDDARIREILPR---IG-RHITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTE 281 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---------R 331 ++V+ + G H A N + + + D + AL+ F +G G+R+ + Sbjct: 282 LKVMLNAPGCHNALNAAAAIAVATEERISDDCILTALANF---QGTGRRFDFLGHFSLEK 338 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 +G L+D+ Y +P + I P +RI ++ + + D Sbjct: 339 VNGKKGSVMLVDD-YGHHPTEVAVTIKAARAGWPE---KRIVMIFQPHRYSR-THDLYDD 393 Query: 392 LAEVLSLYNI---SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFL--------FIQ 438 A+VL+ ++ +V+ +G + D +L R+I V + ++ +F+ + Sbjct: 394 FAKVLAEVDVLLMLNVYAAGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILA 453 Query: 439 SSLVDGDVVVVKSSNSCG 456 L D D+V+++ + + G Sbjct: 454 KQLNDNDLVLIQGAGNIG 471 >gi|257068262|ref|YP_003154517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium faecium DSM 4810] gi|256559080|gb|ACU84927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium faecium DSM 4810] Length = 503 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +A+TG+ GKTTT ML +I L + + AC ++G+P+ A + F + L + Sbjct: 135 LAVTGTNGKTTTVTMLESILLRAGLRAVAC-----GNVGLPVIEAALD-PAGFDVLALEL 188 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S ++ + HL A + ++ HL G E A+AK I+EG+ +T I+ D Sbjct: 189 SSF-QLHWTQHL-DCEAAAVLNVSDDHLDWHGGAEAYAAAKGRIYEGV-RTACIYNVADP 245 Query: 230 SFFELLKAKSHALGIKTI 247 + L++ G + I Sbjct: 246 TTLRLVEEADVREGARAI 263 >gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 478 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 47/316 (14%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V N V + + IPV +LG L +L IAI G+ GKTTT ++ Sbjct: 74 VAGNNPEVLAARAAKIPVIQRAVMLGELMRLKQG---------IAIAGTHGKTTTASLVA 124 Query: 128 --IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +A + T+ IG N G L R DF + E S ++ P Sbjct: 125 SVLAEGGLDPTF-VIGGKLNSAGANARLGRG----DFIVVEADESDASFLQLF-----PA 174 Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALG 243 + V+T I H+ + + + A + + + G L DD+ +++ S Sbjct: 175 MEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAVLCIDDANVRDIIPFVS---- 230 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------IGYH 291 + + +G S +AD +R ++ + M + ++ V HG G H Sbjct: 231 -QPVLRYGLSDDAD--IRAANVRADGTRMHFTVDRRT--VRRHGNKPGPLNITLNLPGLH 285 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQ-GFFTLIDESYNAN 349 +N L +GI + L + KALS F R +RY L+ G FTLID+ Y + Sbjct: 286 NVRNALAAIGIATELGVGDEAITKALSEFGGVGRRFQRYGEIPLDSGGSFTLIDD-YGHH 344 Query: 350 PASMKAAISVLSQISP 365 P M A ++ P Sbjct: 345 PVEMSATLAAARGAYP 360 >gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] Length = 509 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 48 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 160 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 273 PTI-TYGRSEESNYQV 287 >gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] Length = 487 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 50/379 (13%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLS 82 V G++ DSR + P F A+ G DG F A + GA V TD+ + + Sbjct: 22 VAGLTADSRRVVPGGVFVAVPGTAADGRLFAAAAARAGAVAVAGEGTRPTDLPEATAWIE 81 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V + AL A R T++A+TG+ GK++ + + LS + + A +G+ Sbjct: 82 -----VAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLGT 136 Query: 143 YN---------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRP 184 + + + TLAR+ + GI +L M SH E R L + Sbjct: 137 VGIVTNRGAEYGSLTTPDPVTLHQTLARLAGE---GITDLAMEASSHGIEQRRLDGVAL- 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG 243 A T + HL +E+ AK +F L G +N D ++ E + + A G Sbjct: 193 TAAAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG 252 Query: 244 IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ + G+S DF +L + + + G+ V +G +N L+ G+ Sbjct: 253 -HTVLTTGRS--GDFIRLIESGTVGFSQSLTLAHDGREYRVRLPLVGGFQVENALVAAGL 309 Query: 303 -VSILTADVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +S D A VF EG G+ R G L+D Y P +++ Sbjct: 310 ALSTQAGAADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE--- 360 Query: 358 SVLSQISPHGEGRRIAVLG 376 VL+ + P G+ + V G Sbjct: 361 HVLTALRPFASGQLVVVFG 379 >gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae PittGG] gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae PittGG] Length = 475 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 46/231 (19%) Query: 56 FILHAVQ--KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 +I HA + KGA +VVV N ++VAS IPV + LA R R Sbjct: 67 YIGHAAEHIKGASVVVVSSAIKDDNPELVAS-KQKRIPV------IQRAQMLAEIMRFRH 119 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVD 159 IA+ G+ GKTTT M+++ + K T+ G N H+G L + Sbjct: 120 G---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADE 176 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 D L +P ++V+T + P H+ + G E++ + + L Sbjct: 177 SDASFLHL---------------QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP 221 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 G + DD L K +G + + ++G S+ AD+++ ++Q Q Sbjct: 222 FYGLAVMCADDPVLMELVPK---VG-RQVITYGFSEQADYRIEDYEQTGFQ 268 >gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 484 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 104/432 (24%), Positives = 186/432 (43%), Gaps = 62/432 (14%) Query: 54 HDFILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 H F+ H+ + A +VVV+T + + + L IPV ++L L R R Sbjct: 66 HIFVGHSAEHVNEASVVVVSTAIKQDNPELLAARELRIPVVRRAEMLAEL------MRFR 119 Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 IAI G+ GKTTT ++ +I + + IG N G T AR+ Sbjct: 120 HG---IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNSAG---TNARL----GSSR 169 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223 + + + + FL HL +P ++++T I H+ + G ++ + + L G Sbjct: 170 YLIAEADESDASFL-HL-QPMVSIVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLA 227 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSME 282 + DD +++ + TI ++G S +AD Q+ + Q S +S V+ + +E Sbjct: 228 VVCVDDP---VIRGMLPEIARPTI-TYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELE 283 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYR----CALN 335 V + G H N L +++ T D D I+AL+ F EG G+R++ Sbjct: 284 VTLNLPGIH---NALNAAAAIAVATEDGIGDDAIIRALAKF---EGVGRRFQQYGEFETG 337 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 +G L+D+ Y +P+ +K I+ P E R + V ++ + D A+V Sbjct: 338 RGKAMLVDD-YGHHPSEVKVTINAARAGWP--EKRLVMVF--QPHRYTRTRDLYEDFADV 392 Query: 396 LSLYNI---SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDG 444 LS ++ V+ +G + D AL RSI + T D + + + +G Sbjct: 393 LSKVDVLVMLEVYAAGEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGLVGEG 452 Query: 445 DVVVVKSSNSCG 456 D+V+ + + + G Sbjct: 453 DLVLTQGAGNVG 464 >gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] Length = 162 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 9 DLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + I QGH + I DSR A + F +KG + +F+L A+ +G G Sbjct: 15 DLFREIIDQGHYHYNYSDVVFDSICYDSRK-AQENCLFFVKGAAF-KKEFLLSAIAQGLG 72 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 V D + IPV V D+ A++ +A+ + K I+A TG+ GKTT Sbjct: 73 WYVAEQDY-----EVDIPVIVVSDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124 >gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus str. MIT 9312] gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus str. MIT 9312] Length = 468 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 14/136 (10%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL---TL 153 ++ VA + + I ITG+ GKTT +L+ L K YA + +IG PL Sbjct: 109 EINVAWEILKETNWIGITGTNGKTTVTHLLSHILCE-NKLYA---PFAGNIGTPLCKYAY 164 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 ++ +D+ + EL + ++ V+P+I + TT HL +E + K + Sbjct: 165 SKKYEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSL 220 Query: 214 FEGLEKTGTIFLNYDD 229 LEK+ NYDD Sbjct: 221 ---LEKSDFRIYNYDD 233 >gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG I A+++GA V + + +P+ Sbjct: 17 LIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLPITDVPL 76 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L+ +A R + ++ +TG+ GKT+ +++ AL ++ + +G Sbjct: 77 IPVKGLAAQLSD--IAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHCGIVG 134 Query: 142 S 142 + Sbjct: 135 T 135 >gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] Length = 487 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 28/372 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 VP V+GI +DSR +A + F AI G DG +I A+ GA ++ +A Sbjct: 16 VPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYIDAAIDAGAAAIIAEAPGMAVEQRR 75 Query: 82 SIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V G V L+++A K ++ +TG+ GKT+ ++ ++ A Sbjct: 76 GVVVIGFSGVREHLSRIAGNFFGHPSEKMNLVGVTGTNGKTSVTHIMAQLAKALGMEAAV 135 Query: 140 IGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTH-LVRPHI------ 186 IG+ + + L R + V + L + +H L++ + Sbjct: 136 IGTTGSGLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVAMEVSSHALIQRRVEALHFA 195 Query: 187 -AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A IT I+ HL +E +AK +F + DD+ + L + Sbjct: 196 AAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNRVVNADDDTLSHWQQDDLADLWV- 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S S N Q EQ S + QG+S V +G N+L + ++ Sbjct: 255 ---SLNASPNEPCLQATGVQFHEQGSVFSLNWQGESCVVETPLLGRFNVYNLLCAVAVLL 311 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + KA P GR + + NQ ++D Y P ++ VLS + Sbjct: 312 KLNKPLADIGKACGRLQPVPGRMEAFHN--NQSPLVVVD--YAHTPDALH---QVLSALR 364 Query: 365 PHGEGRRIAVLG 376 H +GR V G Sbjct: 365 LHCKGRLWCVFG 376 >gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 73/365 (20%), Positives = 146/365 (40%), Gaps = 49/365 (13%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDF 162 ++ IAI G+ GKTTT M+T+ +K + IG +IG +V+ Sbjct: 98 MKEYENSIAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGMFKNIGG---------NVEI 148 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G ++ +S E P +AVIT I HL F + +I ++ + +++ G Sbjct: 149 GNSDIFISEACEYVDSFLQFYPKVAVITNIEEDHLDYFEDLSQIKNSFLKFANQVKEGGF 208 Query: 223 IFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK------QCSEQSWME-- 273 + N DD + + LK + +Y +G ++ DF + + C + + Sbjct: 209 VIANGDDENVRDTLKDCK-----RNVYYYGFNEGNDFIIDNLEFDDFGYPCFDIFYANDG 263 Query: 274 VQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 V + + V H + + A + +++ ++ I D+ AI+ + G G+R+ Sbjct: 264 VLIDNYKLNVFGKHNV--YNATSAIVSACMLDIEKEDIKNAIEKFT------GVGRRFEY 315 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGE 383 + + D+ Y +P +K+ + + + PH R A+ + E + Sbjct: 316 IGEKDGVRVFDD-YAHHPTEIKSTLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVECFD 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442 D+A +Y L D + R +Y ++ D + F++ + Sbjct: 375 -----ETDIAIFADIYAAREPIDETVSSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENAN 429 Query: 443 DGDVV 447 DGD++ Sbjct: 430 DGDLI 434 >gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] Length = 500 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 32/255 (12%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F I G +DGH F AVQ+GA +++ + L +P V++ A+ A A Sbjct: 46 FCCIPGEKHDGHSFASDAVQRGAAVLLCQHAL-----PLQVPQIIVENSRWAMGFAAAAV 100 Query: 103 R--LRSKATIIAITGSVGKTTTKEML---------------TIALSSIKKTYACIGSYNN 145 + ++ ITG+ GKTT+ M+ TI + +K + Sbjct: 101 YGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKEQEADRTTPE 160 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 V +ARM + + SH L + + V T + P HL +E Sbjct: 161 SCDVQRLIARMKRNGCTSVIMEASSHGANQGRLNGCLFQGM-VFTNLTPEHLDYHKDMEH 219 Query: 206 IASAKAEIFEG-LEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFG--KSKNADFQLR 261 AK ++FE + + +N DD + LL+ K SFG +++ D QL+ Sbjct: 220 YFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIYG-----KKCLSFGLDSTRHHDVQLQ 274 Query: 262 KWKQCSEQSWMEVQL 276 + + M+VQ Sbjct: 275 NFYMTLSELSMKVQF 289 >gi|222152567|ref|YP_002561742.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus uberis 0140J] gi|222113378|emb|CAR41017.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus uberis 0140J] Length = 444 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 42/295 (14%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + G+ GKT+T +L+ L +I T IG R + + +FE S Sbjct: 109 VAGAHGKTSTTGLLSHVLKNITDTSFLIGD---------GTGRGSANAQYFVFE---SDE 156 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E F+ + P ++IT I H F+GI+++ SA + + ++K +F+ +D Sbjct: 157 YERHFMPY--HPEYSIITNIDFDHPDYFTGIDDVFSAFNDYAKQVKK--ALFVYGEDE-- 210 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYH 291 EL K ++A IY +G DF + + S +V+ + + H G H Sbjct: 211 ELKKISANA----PIYYYGFEDYNDFVAYDITRTTNGSDFKVKHKDNVIGSFHVPAYGKH 266 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANP 350 N + + I D+D K + F G +R+ +N+ T+I + + +P Sbjct: 267 NILNATAVIANLYIAGIDMDLVAKHMLTF---SGVKRRFTEKIINE---TIIIDDFAHHP 320 Query: 351 ASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + A I Q PH R IA+L D + L+++ + LA++ Sbjct: 321 TEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDDFAQA--LNEADSVYLAQI 373 >gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC 33331] Length = 464 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 21/201 (10%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS--SIKKTYA 138 L IPV D L +L LRS IA+ G+ GKTTT ML +ALS ++ +YA Sbjct: 92 LDIPVVHRSDALASLMD-----GLRS----IAVAGTHGKTTTTSMLAVALSELALDPSYA 142 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G P T A D D + E S ++ P +A++ + H + Sbjct: 143 IGGDLEG----PGTNATHG-DGDIFVAEADESDRSFQKYA-----PEVAIVLNVELDHHA 192 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 N++ ++EI + + GT+ + D L + + ++G+S+ AD Sbjct: 193 NYASMDEIYESFETFVGKVVPGGTLVVAADQPGAVELTRRVRERSSVRVVTYGESEGADV 252 Query: 259 QLRKWKQCSEQSWMEVQLQGK 279 ++ K S + V L GK Sbjct: 253 RVHKVTPRGLTSEVTVVLNGK 273 >gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] Length = 481 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + IS DSR + FF +KG H+ +F+ AV G G + TD+ + IPV Sbjct: 36 DKISYDSRKADSRTLFF-VKGEHFK-REFLEKAVAAGLGFYLSETDL-----EVGIPVLL 88 Query: 88 VDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 V+D+ A++ +A+ K ++A TG+ GKTT Sbjct: 89 VNDIKQAMSLIAMEFYGHPEQKLKLLAFTGTKGKTT 124 >gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces bingchenggensis BCW-1] Length = 476 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 12/177 (6%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVD 159 A L A IA+ G+ GKTTT ML ++L+++ +YA G + P + A+ Sbjct: 106 AGLMDGARPIAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD----APGSNAQ---- 157 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 G E+ ++ E H P +A+I + H +N++ +EEI + E + Sbjct: 158 --HGGGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEIHESFQTFVERIRP 215 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 GT+ ++ D L + + ++G+ AD ++ Q S + V L Sbjct: 216 GGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDIAQRGLTSEVTVLL 272 >gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus YJ016] gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016] Length = 515 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82 V + +DSR + + F AI G DG +I A+++GA V+ + G + Sbjct: 47 VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRYQQN 106 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + ++ + L++LA + ++I +TG+ GKTT +++ L + A +G+ Sbjct: 107 VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 166 Query: 143 YNN 145 N Sbjct: 167 TGN 169 >gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] Length = 509 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 48 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215 Query: 187 AVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 273 PTI-TYGRSEESNYQV 287 >gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. mediasiatica FSC147] Length = 451 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 IAITG+ GKTTT +L L + K + I +G + A + V+ G +L + Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFI------VGGVVKYADSNIQVN-GTDKLVIE 158 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL + P + +IT I H++ ++ + F E +I+L DD Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L AK + K + S+G S +AD Q+ + E + +++ +G + G Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275 Query: 290 YHMAQN 295 + QN Sbjct: 276 RYNVQN 281 >gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 146 Score = 44.7 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ +DSR I + F + G D H F+ AV+ GA ++V D+ ++ I Sbjct: 23 ITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDV-----NIEI 77 Query: 84 PVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 P V D A+ +A +K +I ITG+ GKTTT +L LS Sbjct: 78 PKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILS 127 >gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium cylindroides T2-87] Length = 436 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LAR 155 ++ +A R A+TG+ GKTT +L L++ +K +IG PL+ LA Sbjct: 91 EIEIAYRFAPGFKYAAVTGTDGKTTVTTLLYEMLNAKEKALVA-----GNIGTPLSELAL 145 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + F + L +S+ + T +P I+V+T +AP HL +EE +K I++ Sbjct: 146 IHQEETFNV-ALELSNFQLLGIDT--FQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYK 202 Query: 216 GLEKTGTIFLNYDDS 230 N DD Sbjct: 203 NCNSQDWFIRNIDDE 217 >gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] Length = 483 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 52/374 (13%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI DSR I + F A++G DGH++I AV+ GA V+V+ + A+ I + + Sbjct: 24 GIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFPVKYIWIKDL 83 Query: 89 DDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 LG L A+ + K II ITG+ GKTTT ++ L S K A IG+ Sbjct: 84 RKKLGVL-----ASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSNKT--ARIGTVE 136 Query: 145 NHIGVPLTLA--RMPVDVDF-----GIFELGMSH-----------LGEIRFLTHLVRPHI 186 IG + A P +D E GM + LG + L + Sbjct: 137 YKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRVDMLEF----DV 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIF----EGLEKTGTIFLNYDDSFFELLKAKSHAL 242 ++ T + HL +E+ AK ++F +G EK I N DD + + L ++ + Sbjct: 193 SMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVI--NIDDLYGKRLSSEFGGI 250 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S+G + R + + +E+ + S +G + N+L + I Sbjct: 251 ------SYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAISI 304 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + + ++ + GR + C Q F ++D S+ ++ A ++L Sbjct: 305 ALLLGIEKEIVLERIKELKGAPGRYELVNCG--QNFTVIVDYSHTSD-----ALENILKS 357 Query: 363 ISPHGEGRRIAVLG 376 I+ +G+ I V G Sbjct: 358 INELKKGKVITVFG 371 >gi|91762846|ref|ZP_01264811.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718648|gb|EAS85298.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 464 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 137/355 (38%), Gaps = 36/355 (10%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I +TGS GKTTT +L S K I G N I L + D+ I E Sbjct: 111 IVVTGSHGKTTTTSLLASIFSKTKLDPTIINGGVLNAIKNSAKLGKS----DWCILEADE 166 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S I V P +++T I H+ ++ ++++ + + G F+ DD Sbjct: 167 SDGSFIH-----VPPTYSIVTNIDREHMDFYNSMKDLKELFIKFINKVPSFGKSFICIDD 221 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH- 286 + L +K L +K Y++G ++F ++ KQ E S + + L GK + Sbjct: 222 KNNKDLLSK---LKMKNYYTYGTDNKSNFYIKNIKQEKEYSQYDLAINLPGKKNLTIRKI 278 Query: 287 ---GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF---- 339 +G H +N + + + + K L F + R + F+ Sbjct: 279 KLPLLGIHNIRNSTAAIAVAVTIGISQNIIKKGLKEFKGVQRRFNKIFTHRETNFYDDYA 338 Query: 340 ---TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF-HIDLAEV 395 T I E N A+ K V+ PH RI+ L D+ + E S SF D+ + Sbjct: 339 HHPTEIREVLNGVRAAYKKE-EVICIFQPH----RISRLKDLKK--EFSLSFKKADVVIL 391 Query: 396 LSLYNISHVWLSGFHVLAL-KDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 +Y GF KD + S + + E L FI++++ +VV Sbjct: 392 CPIYTAGEKIKLGFKYNNFAKDIIKNSKVRLFMVEDQYQLAKFIKNTIFGKKIVV 446 >gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis ATCC 21756] gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis ATCC 21756] Length = 470 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 8/158 (5%) Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 + AA + + IIAITG+ GK+TT ++ +S + G+ + L L M Sbjct: 105 RTVAAAPVHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRIGGNIGQGV---LGLEDM 161 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + EL L LT + P V+ I+P HL G++ +AK IF Sbjct: 162 HGGAVY-VLELSSYQLD----LTSSLHPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLN 216 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 K T + DD + + + + A +TI+ K Sbjct: 217 QGKGDTAIIGVDDPWCQQICTEITAANRRTIWPISAGK 254 >gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8] gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8] Length = 481 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 84/368 (22%), Positives = 150/368 (40%), Gaps = 45/368 (12%) Query: 111 IAITGSVGKTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT ++ L + + T+ IG N G L + + Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLDPTF-VIGGKLNSAGTNAQLG-------GSRYLVA 173 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL P I+V+T I H+ + G +E++ + L G + Sbjct: 174 EADESDASFL-HLT-PVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCV 231 Query: 228 DDSFF-ELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEV 283 DD + E++ S A I ++G + +AD++ ++ V+ G ++V Sbjct: 232 DDDYVQEIIPRISRA-----IITYGIDNPDADYRAENITSDGLKTRFLVRRPGGRPDLQV 286 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFF 339 G H N L T+ + + D + L+ F G G+R++ + Sbjct: 287 ELKMPGRHNVLNALATIAVATDEGVDDQAICRGLAGF---AGVGRRFQVYGEYRTPKAAA 343 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD---MCEMGELSQSFHIDLAEVL 396 TL+D+ Y +P ++A I + P RRI +L +L + F L+EV Sbjct: 344 TLVDD-YGHHPTEVEAVIRAAREAWPQ---RRIVMLYQPHRYTRTRDLYEDFVRVLSEVD 399 Query: 397 SLYNISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448 L + V+ +G + D AL RSI + E + + + L DGD+++ Sbjct: 400 GLL-LMDVYSAGEPAIPGADGRALCRSIRQRGKVEPVFVEDNREIESLLANVLQDGDLLI 458 Query: 449 VKSSNSCG 456 + + G Sbjct: 459 TQGAGDIG 466 >gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Faecalibacterium prausnitzii A2-165] gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Faecalibacterium prausnitzii A2-165] Length = 467 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+A+TGS GKTTT + I K Y G H+G + A +P+ + ++ + Sbjct: 121 IVAVTGSDGKTTTTTL-------ISKFYEAAGR-KVHLGGNIGAALLPMLPEVRPEDVAV 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 L + ++ P IAV+T + P HL + ++E AK I Sbjct: 173 VELSSFQLISMHQSPKIAVVTNVTPNHLDHHKDMQEYIDAKRNIL 217 >gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] Length = 501 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7] gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7] Length = 480 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA ++VV++ + VAS IPV ++L L R R Sbjct: 64 FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT ++ A + T+ IG L A + + Sbjct: 118 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL +P +AV+T I H++ + G ++ E L G Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224 Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282 + DD E+L + + ++G S++AD + +Q ++W V + + + ++ Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 V + G H N L T+ I + + ++ LS F +G G+R++ + G Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336 Query: 339 FTLIDESYNANPASMKAAISVL 360 L+D+ Y +P + A I + Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357 >gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Enterococcus faecium DO] gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] Length = 501 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister micraerophilus DSM 19965] gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister micraerophilus DSM 19965] Length = 449 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA+I+A+TG+ GKTTT ++L + L + K +A G ++GV L+ +D + I Sbjct: 102 TKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAG----NLGVSLSDKADLID-EKSII 156 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S ++ F+ + +P A I I P HL +E AKA IFE + I L Sbjct: 157 AAEVSSF-QLEFIKNF-KPKTAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL 214 Query: 226 NYDDSF 231 N DD + Sbjct: 215 NADDKY 220 >gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] Length = 506 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 6/115 (5%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS---IGSLSIPVFGVD 89 DSR + F+A KG DG DF+L A ++GA ++ + D S + ++IP+ + Sbjct: 34 DSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGAAAIICDYDKDPSAEQLKDVTIPLLHLK 93 Query: 90 DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + ++ + A SK +I ITG+ GK+T +++ L+ + A G+ Sbjct: 94 KGM-SVGEFASWFYFSPSSKLRLIGITGTNGKSTVTQLIAQYLALFNRKCAVFGT 147 >gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 438 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 33/260 (12%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A IIAITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGINVGVGGNIGLP---ALMLLDTDRELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A I + H+ + G+++ +AK I+E + T Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + +++K L+ F G R++ L+ Sbjct: 262 MPLT----GQHNYSNALAALALADAAGLPRASSLKVLTTF---TGLAHRFQLVLDHNGVR 314 Query: 341 LIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 315 WINDSKATNVGSTEAALNGL 334 >gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella paramesenteroides ATCC 33313] gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella paramesenteroides ATCC 33313] Length = 444 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--NNHIGVPLT-LARMPVDVDFGIFEL 167 IA+TGS GKTTT EM+ +S+ +T G +IG P++ +A + D + EL Sbjct: 106 IAVTGSNGKTTTTEMI----ASVLRTQTGDGHVLVAGNIGTPVSEVAPKMLKDDVLVTEL 161 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE-IASAKAEIFEGLEKTGTIFLN 226 L + +PHIAV+T I +HL NF G E +AK I + +N Sbjct: 162 SSFQLTGMP----APKPHIAVLTNIFASHL-NFHGTRENYVAAKMNITKHQTAADFFVVN 216 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK 252 YD+ + L +++A TI F + Sbjct: 217 YDNEEWRHLAEQTNA----TIVPFSR 238 >gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phytofirmans PsJN] gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phytofirmans PsJN] Length = 515 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 42/236 (17%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD----MVASIGSLSIPVFGV 88 D+RS+A +AFFA D FI A+++GA V+V + + +L++P Sbjct: 34 DTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQPEGFSGAIDPSNTLAVP---- 89 Query: 89 DDVLGALNKLA--VAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ALN+LA +A+ + + + +TG+ GKT+ + ++ AL+++ A IG+ Sbjct: 90 -----ALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 143 YNN-------HIG-----VPLTLARMPVDVDFGIFELGMS------HLGEIRFLTHLVRP 184 + H G P + D G + M H G + Sbjct: 145 LGSGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAF---- 200 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV T + HL E +AKA +F + + +N DD+ L A + Sbjct: 201 DIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPDLRAAV-INRDDAAGRRLLASTQ 255 >gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus brevis ATCC 367] gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus brevis ATCC 367] Length = 474 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A +IA+TGS GKTTT M+ + ++ + Y +IG+P + V D + Sbjct: 125 AEAELIAVTGSNGKTTTTTMIQKMVDHDRRAGKAV--YAGNIGIPASRVAQAVTADDTLV 182 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L +S + T PHIAV+T I HL E +AK +I + Sbjct: 183 -LEVSSF--MLVGTTTFHPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQTADDYFVV 239 Query: 226 NYDDSFFELLKAKSHA 241 N+D L +S A Sbjct: 240 NFDSPELRELSEQSAA 255 >gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis IP 32953] gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis PB1/+] gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pseudotuberculosis IP 32953] gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis PB1/+] Length = 438 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 58/367 (15%) Query: 15 QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66 QG + I+ G +D +R + P+ I P G D + +V++ G Sbjct: 5 QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61 Query: 67 ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 L+VV+ M + +LS +++G + ++A ++AITGS GK+ Sbjct: 62 WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +T + + K +IGVP LTL + D + EL L T Sbjct: 118 T----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTVLELSSFQLET----T 167 Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237 H +R A I + H + G+++ +AK ++E + +N DD+ + A Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCIVNADDALTMPVRGA 224 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMA 293 S + SFG D+ L K + + W+ V+ L + M++ G H Sbjct: 225 DSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNY 270 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + + +++KAL+ F G R++ L + I++S N S Sbjct: 271 TNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGST 327 Query: 354 KAAISVL 360 +AA+ L Sbjct: 328 EAALDGL 334 >gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] Length = 516 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 3 PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 P DL QA+ G H G G V G ID+R++ E F A+ G H G F A Sbjct: 18 PWVEVTDLAQAVGGTVHGDG----GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADA 73 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 +GAG V+ + +A + L IP V DV + A A Sbjct: 74 ASRGAGAVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115 >gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PAO1] gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa LESB58] gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192] gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016] gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1] gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192] gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa LESB58] gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016] Length = 480 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA ++VV++ + VAS IPV ++L L R R Sbjct: 64 FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 117 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT ++ A + T+ IG L A + + Sbjct: 118 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTFV--------IGGRLNAAGTNAQLGASRY 166 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL +P +AV+T I H++ + G ++ E L G Sbjct: 167 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 224 Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282 + DD E+L + + ++G S++AD + +Q ++W V + + + ++ Sbjct: 225 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 279 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 V + G H N L T+ I + + ++ LS F +G G+R++ + G Sbjct: 280 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 336 Query: 339 FTLIDESYNANPASMKAAISVL 360 L+D+ Y +P + A I + Sbjct: 337 VMLVDD-YGHHPREVAAVIKAI 357 >gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204] gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204] Length = 459 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 56/397 (14%) Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-IA 129 N + V+S+ IP+ ++LG L + + IA++G+ GKTTT ML+ I Sbjct: 86 NPEYVSSV-EKKIPMMTRAELLGEL--------MENYKHSIAVSGTHGKTTTTSMLSYIL 136 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL---VRPHI 186 +++ +G HIG + + R G + L E T+ ++P + Sbjct: 137 MAANTDPTISLGGMLAHIGGNIRVGR------------GQTFLTEACEYTNSFLELKPLV 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG--I 244 +I + HL F +++I + G+++ GT+ +N+ ++ K + +G Sbjct: 185 GIILNVEADHLDFFKDLDDIRLSFRRFASGIKEGGTLVINHS------IQDKEYIIGDFK 238 Query: 245 KTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGI 302 T+ +FG ++ D R EV + + + V + G H N L + Sbjct: 239 GTVITFG--EDGDMHARNIAYDALGNPGFEVYYKDEKLGDVQLLVPGKHNVDNALAAIAT 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D AIK V + R +Y+ N T+ID+ Y +P ++A ++ Sbjct: 297 AYSIGIDF-AAIKQGLVSYSGVDRRFQYKGKCNGA--TVIDD-YAHHPQEIEATLNAAKH 352 Query: 363 ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 PH R IA+L + + E + D+ + +Y V +G Sbjct: 353 YPHKKLYVVFQPHTYSRTIALLPEFAKALE-----NADVVILAKIYAAREVNTTGVSAED 407 Query: 414 LKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +S + Y T + + +++S L +GD+ + Sbjct: 408 ISKLMNQSKVTSFYLPTFEEIVDYLRSHLEEGDLCIT 444 >gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] Length = 501 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 152 TLNGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] Length = 501 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 24/228 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR + P F AI+G + DGH +I AV+ A + +V ++ S S + Sbjct: 25 VGSICFDSRKVGPNAVFVAIRGFNTDGHQYINQAVEADA-MAIVCEEIPKSWSSHQL-FL 82 Query: 87 GVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D AL K +A R A+ +I +TG+ GKTTT M+ L + + IG+ Sbjct: 83 KVWDSREALAK--IAKRFYENASDELKVIGVTGTNGKTTTTGMIKCILDANEIKTGLIGT 140 Query: 143 YNNHIGVPL-TLARMPVD-----------VDFGIFELGM---SHLGEIRFLTHLVRPHIA 187 IG L L R D ++ G + M SH ++ T +R IA Sbjct: 141 TGYIIGNQLYELDRTTPDALELHQLFHKMLEAGCRAVVMEVSSHALALK-RTAGIRFDIA 199 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 V T + HL + A AK +F+ L ++ +N DD + E + Sbjct: 200 VFTNLTHDHLDFHGSMTAYADAKKLLFDNLSESAFAVINADDDYAEKM 247 >gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus str. MIT 9301] gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus str. MIT 9301] Length = 476 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 36/221 (16%) Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 V+G +N VA + I ITG+ GKTT +L+ L + +IG P Sbjct: 104 VIGEIN---VAWEILKDTNWIGITGTNGKTTVTHLLSHMLCDT----GLYAPFAGNIGTP 156 Query: 151 LTL---ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 L ++ +D+ + EL + ++ V+P+I + TT HL +E Sbjct: 157 LCKYAHSKKHEKIDWVVAELSSYQIE----ISPEVKPNIGIWTTFTEDHLERHKTLENYF 212 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSK--NADFQLR 261 + K + LEK+ NYDD ++H + G+ SF KS + D+ + Sbjct: 213 NIKKSL---LEKSDFRIYNYDDK-----NLRNHYTSLSRGVWITTSFDKSNLIHCDYWI- 263 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLG 301 +Q+++ V+ K ++ H + G H QN+L+ + Sbjct: 264 -----DDQAYI-VERGKKLFKLEHFSLKGMHNLQNLLLVIA 298 >gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus parainfluenzae ATCC 33392] Length = 437 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 79/363 (21%), Positives = 137/363 (37%), Gaps = 71/363 (19%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS GK+T +T + + K +IG+P L+ + D D + EL Sbjct: 108 IVGITGSNGKST----VTTLVYEMAKAAGIKVGMGGNIGIP-ALSLLNEDCDLYVLELSS 162 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T+ ++ A + + H+ + +E+ AK I+ E T +N +D Sbjct: 163 FQLET----TNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAE---TAVVNLED 215 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288 +FG+ +N ++ + + W++ + GK + + Sbjct: 216 KL-----------------TFGEGENQAKKVVSFAENQADYWLKTE-NGKQYLMAKEEVI 257 Query: 289 ---------GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G H N+L + + +++ AL F +G R++ A Sbjct: 258 LPCDEAILVGRHNYMNILAATALAQAVDINLEAIRIALRQF---KGLDHRFQLAYQTNGV 314 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLA 393 I++S N S AA++ L + EG +LG D E+ +L HI Sbjct: 315 RWINDSKATNVGSTVAALAGL-----YVEGTLHLLLGGDGKGADFSELADLINQPHI--- 366 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 S Y G + AL S H ETM F++ L GD+V++ S Sbjct: 367 ---STYCFGR---DGKQLAAL------SSQSHLFETMQQAISFLRPRLKSGDMVLL--SP 412 Query: 454 SCG 456 +C Sbjct: 413 ACA 415 >gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991] gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991] Length = 440 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 82 SIPV--FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++P+ + V+ + ++ +A R + AITG+ GKTT ML L KK A Sbjct: 75 TVPIVRYFVEHEIAIYTEIEIAYRYANGFRYGAITGTNGKTTITTMLYEMLK--KKGQAI 132 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSH---LGEIRFLTHLVRPHIAVITTIAPAH 196 + +IG PL+ + + + L +S+ LG +F P ++V+ +AP H Sbjct: 133 VAG---NIGYPLSELALRYEDEVKDVALELSNFQLLGIEQFA-----PTVSVVCNLAPDH 184 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L +E ++K I+E ++ N DD Sbjct: 185 LDYMPSVESYYASKMRIYENCKEDAWFLRNLDD 217 >gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] Length = 509 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 48 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 99 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 100 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 159 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + E GM+HL + T V + Sbjct: 160 TLDGKTYFKSHLTTPESLDLYRMMSEA----VENGMTHLVMEVSSQAYKTQRVYGLTLDV 215 Query: 187 AVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LL+ + I Sbjct: 216 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLRETADLFQI 272 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 273 PTI-TYGRSEESNYQV 287 >gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 438 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 35/261 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A IIAITGS GK+T +T + + K +IG+P A M +D D ++ Sbjct: 103 AQAPIIAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDTDRELY 155 Query: 166 ELGMSHLG-EIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 L +S E F V A I + H+ + G+++ +AK I+E + T Sbjct: 156 VLELSSFQLETTFSLQAV---AATILNVTEDHMDRYPLGLQQYRAAKLRIYENAK---TC 209 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279 +N DD+ ++ + SFG D+ L + + ++W+ V+ L K Sbjct: 210 VVNADDALTMPVRGAD-----ERCISFGVDV-GDYHLNRQQG---ETWLRVKGEKVLNVK 260 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 M + G H N L L + +++KAL+ F G R++ Sbjct: 261 EMPLT----GQHNYSNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVQEHNGV 313 Query: 340 TLIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 314 RWINDSKATNVGSTEAALNGL 334 >gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297] gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297] Length = 480 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 78/365 (21%), Positives = 144/365 (39%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++T + G Y+ IG L A + + + Sbjct: 121 IAIAGTHGKTTTTSLMTAVMGR--------GEYDPTFIIGGRLNSAGSNARLGTSRYLIA 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P A++T I H+ + G E + E + G + L Sbjct: 173 EADESDASFL-HL-QPMTAIVTNIDADHMETYCGDFERLKQTYVEFLHNVPFYGLVVLCT 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHH 286 DD + + + S+G + AD + ++ Q+ V G S+++ Sbjct: 231 DDDNVRSILPSIQ----RQVMSYGFNDTADVRAIDIEKKGLQTNFTVLRSGLPSLKIELK 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L + + + +K L+ F +G G+R++ + +G L+ Sbjct: 287 MPGDHNVLNALAVIAVATDEGVPDHEIVKGLNGF---DGVGRRFQVNGEFSTPKGDVLLV 343 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P ++ + P RR+ L ++ + D +VLS ++ Sbjct: 344 DD-YGHHPRELQVTFDAIRTGWPE---RRLVALFQPHRYSR-TRDLYEDFVDVLSKVDVL 398 Query: 402 --SHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451 V+ +G + D +L RSI + E D +F + L DGD+++ + Sbjct: 399 LLLDVYPAGEEPINGADGRSLCRSIRQRGRVDPVFIEDKDSIFSVLPDVLQDGDILLTQG 458 Query: 452 SNSCG 456 + G Sbjct: 459 AGDVG 463 >gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 491 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 81/396 (20%), Positives = 145/396 (36%), Gaps = 49/396 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSLSI 83 +G +D+ + P + A+ G G + + A+ +GA V+V A Sbjct: 23 ITSGPCLDADRVTPGSLYVALPGHRAGGPEALGEALARGAAAVLVEGPDPAGHRPADTGA 82 Query: 84 PVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALS-SIKKTYA 138 V V D + V+AR + ++A+TG+ GKT+ M L+ S Sbjct: 83 CVVRVPDAR--IATALVSARYHGEPGRAMDVVAVTGTNGKTSVSSMYESLLTLSEGARVG 140 Query: 139 CIGSYNNHIG-VPLTLAR----MPVDVDFGIFELGMSHLG---------EIRFLTHLVRP 184 IG+ +G P+ + R P D M G + L H V Sbjct: 141 VIGTSGARVGGAPIPMPRSVLSTPESPDLQYLLACMRDRGGDSVVLEATSMGLLNHRVDG 200 Query: 185 ---HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + V T + HL + +E AK +F+G+ + + N DD + A A Sbjct: 201 SFVDVGVFTNLTQDHLDDHGTMESYTRAKMLLFQGMCRRAVV--NADDP----VGAAIPA 254 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 L + ++ +AD++ S + + G+ G N L + Sbjct: 255 LMPGAVTTYAVDADADYRATDLVVDSSGTRFVLHHDGRKYPAAIPVPGRFSVSNALAAVA 314 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L D+D + AL GR + + +G ++D Y +P S+ + + Sbjct: 315 ACHVLGHDLDALVDALDRMPQIPGRFEHF--GTPEGVSVIVD--YAHSPDSLDKVLCTIR 370 Query: 362 QISPHGEGRRIAVL----GD-----MCEMGELSQSF 388 +P RR+ + GD MGE++ ++ Sbjct: 371 GFAP----RRVLTVFGCGGDRDTTKRARMGEIAATY 402 >gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 427 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 36/258 (13%) Query: 106 SKATIIAITGSVGKTTTKEML--TIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF 162 ++ +IAITGS GK+T ++ IA + +K +G N IG P L L + P +D Sbjct: 95 AQVPVIAITGSNGKSTVTTLVGEMIAEAGLK-----VGVGGN-IGTPALELLKQP--MDL 146 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L TH +R +V+ ++ H+ + G+ + +AK EI + + Sbjct: 147 CVLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIH---QHSQH 199 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I +N DD A++ + SFG N + +C + L G+ + Sbjct: 200 ILINRDD-------AQTLPDVGQVWQSFGLDCNG------YGRCELDGRHWLTLHGEPLL 246 Query: 283 VVHHG--IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G H N L + + + + ++ L F EG R R Sbjct: 247 AVDEMKIVGAHNQANALAAMALCDAVGIPREPQLRVLRRF---EGLPHRARFVREVNGVR 303 Query: 341 LIDESYNANPASMKAAIS 358 I++S N + AA++ Sbjct: 304 WINDSKATNVGATLAAVA 321 >gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas atlantica T6c] gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas atlantica T6c] Length = 530 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG------- 79 + + +DSR +A AF A+KG DG DFI A+ GA +++ + A G Sbjct: 46 IESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAEHGHTSMREQ 105 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 SL I + + L AL +S +I +TG+ GKT+T ++ + + + K A Sbjct: 106 SLIISFYDLSAQLSALAAAFYGYPAKS-IQVIGVTGTNGKTSTVQLTSQLAALLNKRAAS 164 Query: 140 IGS 142 IG+ Sbjct: 165 IGT 167 >gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 516 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 3 PLWTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 P DL QA+ G H G G V G ID+R++ E F A+ G H G F A Sbjct: 18 PWVEVTDLAQAVGGTVHGDG----GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADA 73 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 +GAG V+ + +A + L IP V DV + A A Sbjct: 74 ASRGAGAVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIA 115 >gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2083] gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium HTCC2083] Length = 487 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 148/372 (39%), Gaps = 33/372 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS------IGS 80 + GI++DSR + F A+ G G +FI +A++ AG ++ TD V + + + Sbjct: 16 ITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAIL--TDAVGAEIAADELAN 73 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATII-AITGSVGKTTTKEMLT-----IALSSIK 134 + DD AL A A ++ I+ A+TG+ GKT+ + + L ++ Sbjct: 74 SDAAIIVTDDPRSAL-AFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQIWNLLDLEAVN 132 Query: 135 -KTYACIGSYNNHIG----VPLTLAR-MPVDVDFGIFELGM---SHLGEIRFLTHLVRPH 185 T GS + + P+TL R + V GI M SH + R L V Sbjct: 133 LGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQRRLDG-VNLA 191 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T HL E AK +F L+ G +N DD + + A G Sbjct: 192 AAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEVAMIAQAHGH 251 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + I G+ AD L + ++ + + + + IG A+N+L+ G+V Sbjct: 252 ELI-GVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENVLLAAGLVI 310 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D L GR + N G +D Y P +++ A L + Sbjct: 311 ACGEDPARVFDTLGDLETVHGRMQLAATRTN-GAAVFVD--YAHTPDAVETA---LKAMR 364 Query: 365 PHGEGRRIAVLG 376 PH GR +A++G Sbjct: 365 PHVMGRLVALIG 376 >gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748] gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748] Length = 460 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%) Query: 111 IAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 IA+ G+ GKT+T M+ I + + IG +++ L + G F + Sbjct: 108 IAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDYLKGSSCLGK-------GHFSVVE 160 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL +RPH VIT I H+ ++ ++ + +A E E L ++G + D+ Sbjct: 161 ADESDGSFLK--LRPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLPESGKAIVCGDN 218 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI- 288 + ++ + + ++G S N D+ + +V +G ++E + + Sbjct: 219 ENIRYIMSRVN----RNFITYGLSDNNDYVAKNIHYVDSTLVYDVYHKGVNIERIRLRVP 274 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAI--KALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L IV+ V+T I K L F G +R+ + ++D+ Y Sbjct: 275 GEHNVLNSLAAF-IVAHDCCGVETRIITKGLGKF---IGAKRRFETKGHVAGVWVVDD-Y 329 Query: 347 NANPASMKAAISVLSQISPH 366 +P +KA + ++ H Sbjct: 330 AHHPTEIKATLKAAKELEKH 349 >gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440] gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440] gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1] Length = 482 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 41/365 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +A+ G+ GKTTT +L A + T+ IG LT A + + + Sbjct: 119 VAVAGTHGKTTTTSLLASVFAAGGLDPTFV--------IGGRLTAAGTNAQLGTSRYLIA 170 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL HL +P +AV+T I H++ + G ++ E L G + Sbjct: 171 EADESDASFL-HL-QPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCL 228 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 DD + + + ++G S+ AD + +Q Q+ V + + +EV + Sbjct: 229 DDPVVREILPQVK----RPTVTYGFSEEADIRAINVRQQGMQTHFTVLRRDREPLEVSVN 284 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGFFTLI 342 G H N L T+ I + + ++ LS F +G G+R++ + G L+ Sbjct: 285 MPGNHNVLNALATIAIATDEGITDEAIVQGLSGF---QGVGRRFQVYGELPVEGGSVMLV 341 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI- 401 D+ Y +P + A I + P RR+ ++ ++ + D +VL N+ Sbjct: 342 DD-YGHHPTEVAAVIKAVRGGWP---SRRLVIVYQPHRYSR-TRDLYDDFVQVLGDANVL 396 Query: 402 --SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVVKS 451 V+ +G + D+ + +D +++ ++ L GD+++ + Sbjct: 397 LLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLLRAGDILLCQG 456 Query: 452 SNSCG 456 + G Sbjct: 457 AGDVG 461 >gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum subsp. pallidum str. Chicago] Length = 540 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 22/212 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I+ DSR++ FFA++G H G +I A+ GA +V + + + + + Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYV--VGVYYA 83 Query: 87 GVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL+ A A ++A T+I +TG+ GK++T + L K I + Sbjct: 84 RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143 Query: 145 NHIG---VP----------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186 +G +P LT+ R+ ++ +F + E L V + Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 AV + HL E+ KA +F L+ Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235 >gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] Length = 499 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 89/393 (22%), Positives = 162/393 (41%), Gaps = 38/393 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DLL+A + Q + ++ DSR++ FF ++G H DGH+F A + GA + Sbjct: 6 DLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAENGAAAI 65 Query: 69 VVNTDM-VASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEM 125 + + VAS + + V D A+ + K +IA+TG+ GKTTT + Sbjct: 66 IAEKKIDVAS----DVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGKTTTTHV 121 Query: 126 LTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVD-----FGIFELGMSHLGEIRF 177 ++ L + IG+ + IG +P T P +D + + + ++H+ + Sbjct: 122 ISHILHHVGYKTGVIGTVHALIGDKEIP-THNTTPDVIDLQRILYQMLKENVTHVC-MEV 179 Query: 178 LTH-LVRPHI-------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI------ 223 +H LV + AV T + HL ++ A AK+ +F+ + I Sbjct: 180 SSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKDGKSA 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 ++N DD + ++ + ++G + N D + + S ++QL K + Sbjct: 240 WINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEKRYVI 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG N++ +G D+ ALS F GR + Q F ++D Sbjct: 300 KTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIE--EGQSFSVVVD 357 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ ++ +I+ +GR I G Sbjct: 358 --YAHTPDGLEKILTTAKEIA---KGRLITCFG 385 >gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] Length = 492 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 48/378 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G++ DSR + P F A+ G DG F A GA V + + + Sbjct: 27 VAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPEDLPEATAWIE 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144 V D AL A R T++A+TG+ GK++ + + LS + + A +G+ Sbjct: 87 -VADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLGTVGIV 145 Query: 145 -------------NHIGVPLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHIAV 188 + + + TLAR+ D GI +L M SH E R L V A Sbjct: 146 TNRGAQYGSLTTPDPVTLHETLARL---ADEGITDLAMEASSHGIEQRRLDG-VELTAAA 201 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG-TIFLNYDDSFFELLKAKSHALG--IK 245 T + HL IE+ AK +F L G +N D ++ E + + A G I+ Sbjct: 202 FTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAIR 261 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIV 303 T + DF +R + +E + L GK V +G +N L+ G+ Sbjct: 262 TT-----GRGGDF-IRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLA 315 Query: 304 SILTA-DVDTAIKALSVFHPKEG----RGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 A D A VF EG G+ R G L+D Y P +++ Sbjct: 316 LATPAGQADPA----GVFAALEGLTGVPGRMERIGEANGGLCLVD--YAHKPEALE---H 366 Query: 359 VLSQISPHGEGRRIAVLG 376 VLS + P GR + V G Sbjct: 367 VLSALRPFASGRLVVVFG 384 >gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sediminis HAW-EB3] gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sediminis HAW-EB3] Length = 443 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 145/358 (40%), Gaps = 57/358 (15%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD----GHD--FILHAVQ--KGAGLV 68 H +GI P + +DSR P A + P + G D +++ A Q G+ Sbjct: 24 HGLGITP------LVMDSRQQPPGADKLAAEFPDVELISGGFDCRYLVQATQIIVSPGIA 77 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + ++ A+I + I +V+G + A A + R A +I ITGS GK+T ++ Sbjct: 78 IDTPEIRAAI-DMDI------EVIGDVELFARAVKERD-ACVIGITGSNGKSTVTTLVAE 129 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + YA G +IG+P+ L + D++ + EL L TH + A Sbjct: 130 MAKAAGINYAVGG----NIGIPV-LDLLQSDIELYVLELSSFQLET----THSLNCISAT 180 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 I+ H+ +S IE AK ++ +T N +D EL K K Sbjct: 181 CLNISEDHMDRYSDIEAYRQAKLRLY---SQTRFALFNRED---ELTKPKDP----MNQN 230 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVS 304 SFG S + +W C E ++ S+EV+ +G H N++ + + Sbjct: 231 SFGLSLPDN---DEWGVC------EGKIVHGSVEVISLQDVALVGSHNHANLIAAMALAY 281 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++ S F G R+ +N+ I++S N + AAI +S+ Sbjct: 282 QAGIEKAAMVEVASSF---TGLEHRFEMVVNRNGVAYINDSKATNVGATVAAIEGISE 336 >gi|330955586|gb|EGH55846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 122 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 4/49 (8%) Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 ++YNANPAS+ AA+ +L+ + GR + VLGD+ E+GE ++ H ++ Sbjct: 1 DTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGEWAEQGHREV 45 >gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1] gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1] Length = 449 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 33/296 (11%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI+GS GKTTT M++ ++ + T IG G+ T V G EL Sbjct: 109 IAISGSHGKTTTTSMISHISHIAGLDPT-VLIG------GILQTFGSNAV---LGKSELL 158 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S E + I V+T I H+ + E+I A + + G +N D Sbjct: 159 ISEADESDGSFLKLNSVINVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPFYGASVVNID 218 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D+ + +K H K I ++G ++ DFQ + S+ + +V +G + + I Sbjct: 219 DTGVRSILSKIH----KKIITYG-IESGDFQAKNIVFNSDNTRFDVFYKGIKLNTIELQI 273 Query: 289 -GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L ++ + +++ + AL F KR + + LI + Y Sbjct: 274 PGIHNVYNALASIAVSTLMEIEQPVIRDALKSFK----NAKRRIEFVGEKNTNLIYDDYG 329 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEM-GELSQSFHIDL 392 +P +K+ L PH R ++ D ++ L + F +D+ Sbjct: 330 HHPTEIKSVYEALKSKYKDKNIVVVFQPHRYSRTYYLIDDFVDLFKSLDKVFLLDI 385 >gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella blandensis MED217] gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella blandensis MED217] Length = 444 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 12/140 (8%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + ++++ AAR +KAT++ ITGS GKTTT ++ L G+ + + Sbjct: 87 ISVISEIEFAARY-TKATLVGITGSNGKTTTTMLMAHLLKQAGLKSVAAGNIGDSFAKWV 145 Query: 152 TLARMPVDVDFGIFELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209 L D DF E+ L G + F PHIA++T I P HL + E + Sbjct: 146 ALD----DQDFYALEISSFQLDGIVDFA-----PHIAILTNITPDHLDRYEYKFENYIKS 196 Query: 210 KAEIFEGLEKTGTIFLNYDD 229 K I E + + + DD Sbjct: 197 KFRIAENQTEKDYLIYDADD 216 >gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus selenitireducens MLS10] gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus selenitireducens MLS10] Length = 455 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 13/138 (9%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFE 166 +I ITGS GKTTT M L + K G+ + + A +P D V+ F+ Sbjct: 113 MIGITGSNGKTTTTTMTASMLENSPKNPKAAGNIG-EVASKVADASLPEDILVVELSSFQ 171 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L G RF +PHIAV + AHL +++ A AKA IF K + N Sbjct: 172 LQ----GTNRF-----KPHIAVFLNLIEAHLDYHGTMDDYAQAKARIFRNQSKDDVLIYN 222 Query: 227 YDDSFFELLKAKSHALGI 244 DD L ++ + I Sbjct: 223 ADDPLVSSLAEQADSTCI 240 >gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82 V + +DSR + + F AI G DG +I A+++GA V+ + G + Sbjct: 25 VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGLVRYQQN 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + ++ + L++LA + ++I +TG+ GKTT +++ L + A +G+ Sbjct: 85 VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144 Query: 143 YNN 145 N Sbjct: 145 TGN 147 >gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium IMCC3088] gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium IMCC3088] Length = 479 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 40/270 (14%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IA+ G+ GKTTT M+ A + + TY IG N G +LG Sbjct: 119 IAVAGTHGKTTTTSMIASVFAAAGLDPTY-VIGGRVNQSG--------------SNAKLG 163 Query: 169 MSHL-------GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKT 220 SH + FL HL P ++V+T I H+ + G ++++ E L Sbjct: 164 ASHYLIAEADESDASFL-HLT-PMVSVVTNIEADHMDTYGGDLQQLRKTFIEFLHNLPFY 221 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G+ L DD + L + + ++I ++G+ +AD+ +R K S ++Q Sbjct: 222 GSAVLCLDDPEIKALIPQIN----RSILTYGQDPDADYCIRSIKAAGAASDFQLQTPNHG 277 Query: 281 MEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALN 335 + + + G H N T + + L+ F G G+R+ R Sbjct: 278 VLALRVNSPGLHNVLNAAATAAVALDEGLPIAAVQDGLANF---AGVGRRFEQLGRLQHA 334 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISP 365 +G L+D+ Y +P ++A ++ +Q+ P Sbjct: 335 RGQAVLVDD-YGHHPTEVEATLNSAAQVWP 363 >gi|242243000|ref|ZP_04797445.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis W23144] gi|242233601|gb|EES35913.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis W23144] Length = 437 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPGS--------DYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ A + ++K G I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD + L +Y +G + D + + + + +V +QG+ + Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIQGEFYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + +V+ +AL F + R + + NQ L+ Sbjct: 255 FLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFNETKVS-NQ---VLV 310 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 D+ Y +P + A I V++ PH R A L + E L+++ + L Sbjct: 311 DD-YAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLNKADQVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|217076584|ref|YP_002334300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho africanus TCF52B] gi|226722950|sp|B7IFU5|MURD_THEAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|217036437|gb|ACJ74959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho africanus TCF52B] Length = 423 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELG 168 +IA+TGSVGK+TT M+ L+ K+T +IG+P+ L + D+ + E+ Sbjct: 107 VIAVTGSVGKSTTVSMIQHVLNKYKRTLLA-----GNIGIPIAKLLNDDLRADYLVLEVS 161 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 L F + +P+I+ I I P HL+ Sbjct: 162 SFQL----FWSDKFKPNISSILNIYPNHLN 187 >gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 428 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 20/200 (10%) Query: 133 IKKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +KK Y + N IG+P T+ + F + E+ L I++ +P + I Sbjct: 102 LKKQYEDVVVCGN-IGLPFIDTIETSSKNTIF-VLEISSFQLETIKYF----KPKVGCIL 155 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I P HL+ +E AK IFE +++ G LNYD++ L A G ++S Sbjct: 156 NITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLIG--LAKGNVIVFSK 213 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQNMLMTLGIVSIL 306 KS+ + E+ + +GK+ EV+ G H +N L + Sbjct: 214 NKSQFENMVF------VEKDTIYFTFEGKTQEVMKKDEIFIPGEHNLENALAAISCTLPF 267 Query: 307 TADVDTAIKALSVFHPKEGR 326 + DT + L F E R Sbjct: 268 GIEKDTIEQVLKTFRGVEHR 287 >gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium hathewayi DSM 13479] gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium hathewayi DSM 13479] Length = 111 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A G + P ++ +SIDSR++ + F + G D H FI A GA Sbjct: 5 TVKEILEATGGRLLCGSPDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 + V P V D AL L R R K ++ ITG Sbjct: 65 AATFTSEHDVMEDNR---PWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111 >gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] Length = 479 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 20/223 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + + +DSR + AF A+KG DG+ +I + KG LV+ ++ VF Sbjct: 23 IESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFED----QKRVF 78 Query: 87 GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+ LA K II ITG+ GKT+ + L + +G+ N Sbjct: 79 YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 I P +D +S+ + + L V H +A+ + + Sbjct: 139 GI-YPNLRESTHTTLDILSLYQTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + HL ++ AKA++F+ ++ +N DD + + L Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIINIDDEYGQRL 239 >gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC BAA-613] gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC BAA-613] Length = 449 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 24/220 (10%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-F 165 + II ITG+ GK+T +L L +G+ IG+P V D I F Sbjct: 104 RDQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVGN----IGIPALDHMEEVKPDTRIVF 159 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 EL L ++T V PHI ++ I HL ++ +E+ AK IF+ + Sbjct: 160 ELSCHQL---EYMT--VSPHIGILVNIHEEHLDHYGTMEKYVEAKHHIFKNQGPDDILIC 214 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N L + + G+ G K D EQ V +GKS + Sbjct: 215 NVQC----LPEEGTCPSGLIRAGMDGSGKELDV-------VQEQDGTWVHFRGKSFCIPT 263 Query: 286 HGI---GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 I G H ++ + G+ SIL D + L + P Sbjct: 264 DEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEP 303 >gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter italicus Ab9] gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter italicus Ab9] Length = 454 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 75/174 (43%), Gaps = 19/174 (10%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V +++++V + I VFG ++ A R SKA I AITG+ GKTTT +L Sbjct: 78 VPIDSEIVKTAHQKKIEVFG---------EVEFAYRF-SKAPIYAITGTNGKTTTTSLLG 127 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + G +IG PL A M + DF + E+ L I+ +P I Sbjct: 128 EMFKNTGRKVYVAG----NIGYPLIYAVMEAAEDDFIVAEISSFQLETIKEF----KPKI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + I I P HL E K IFE + LNYDD LK K+ Sbjct: 180 SCIINITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNYDDPVTWNLKNKAK 233 >gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus AH1273] gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus AH1272] gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus AH1272] gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus AH1273] Length = 450 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 25/260 (9%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+A + ITGS GKTTT ML + K + I +IG T+A V D Sbjct: 110 SEAPFVGITGSNGKTTTT-MLAFEMLKEGKKHPVIAG---NIG---TVA-CEVAQDAKEN 161 Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ ++ L + + + +P IA + AHL EE AKA IF+ +T Sbjct: 162 EVVVTELSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDYSV 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD+ L A+S G K ++S K ++ E + + +G+ + V Sbjct: 222 INADDADVMTLSAQSK--GQKVLFSTTK------EIEDGAYIKENA---LYFKGEKVAEV 270 Query: 285 HHGI--GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H +N+L + I +L + L F + R + N+ F+ Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFY--- 327 Query: 343 DESYNANPASMKAAISVLSQ 362 ++S N + + A+S +Q Sbjct: 328 NDSKATNMLATEKALSAFTQ 347 >gi|56476229|ref|YP_157818.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aromatoleum aromaticum EbN1] gi|62900474|sp|Q5P6Z4|MURD_AZOSE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|56312272|emb|CAI06917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9), gene: MURD OR NE0989 [Aromatoleum aromaticum EbN1] Length = 466 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 H + P A + + HL ++G++E A+ KA IFEG G LN DD+ + + Sbjct: 185 HALDPEAATVLNVTDDHLDRYAGLDEYAATKAAIFEG---RGVQVLNRDDA-----RVAA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 AL +++ FG S A + + +W+ Sbjct: 237 MALPGRSLIRFGASAPAATDDYGLVEVAGAAWL 269 >gi|300790444|ref|YP_003770735.1| UDP-N-acetylmuramyl tripeptide synthase [Amycolatopsis mediterranei U32] gi|299799958|gb|ADJ50333.1| UDP-N-acetylmuramyl tripeptide synthase [Amycolatopsis mediterranei U32] Length = 397 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 RL + T++ +TG+ GKTTT MLT AL ++ + A N GV L P D + Sbjct: 37 RLGRERTVVIVTGTNGKTTTSLMLTRALETLAEVAANSDGSNMPDGVLAALTACP-DAPY 95 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTG 221 + E+ ++ + ++ VRP + V+ ++ L + E+ + + ++ + E G Sbjct: 96 AVLEVDETY---VPWVADQVRPAVLVLLNLSRDQLDR---VGEVRATERDLRAAIAELPG 149 Query: 222 TIFL-NYDDSFFELLKAKSHALGIKTIY-SFGKSKNAD 257 T+ + N DD +L + ++ K ++ S G+ D Sbjct: 150 TVVVANCDD----VLVTSAASVAAKLVWVSTGRRWTGD 183 >gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter youngae ATCC 29220] gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter youngae ATCC 29220] Length = 438 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 82/355 (23%), Positives = 151/355 (42%), Gaps = 48/355 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T +T + + K +IG+P A M +D + ++ Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGEMAKAAGVNVGVGGNIGLP---ALMLLDAERELY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L + A I + H+ + G+++ +AK ++E + Sbjct: 156 VLELSSF-QLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKS 280 +N DD+ ++ + SFG + D+ L + + ++W+ V+ L K Sbjct: 211 VNADDALTMPVRGAD-----ERCVSFGINM-GDYHLNRQQG---ETWLRVKGEKVLNVKE 261 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M + G H N L L + +++KAL+ F G R++ LN Sbjct: 262 MTLT----GQHNYTNALAALALADAAGLPRASSLKALTTF---TGLAHRFQLVLNHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG G+ + + L L+ N Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 I L F + A R +ETM+ + + GD+V++ S +C Sbjct: 365 IR---LYCFGRDGAQLAALRPEAAEQTETMEQAMRLLAPRVKPGDMVLL--SPAC 414 >gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001] gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001] Length = 467 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 52/373 (13%) Query: 111 IAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT ++ +A + T+ IG L A + G F + Sbjct: 108 IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--------IGGRLISAGANARLGTGDFIVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FL P I VIT I H+ + + A E L G L Sbjct: 160 EADESDASFLNLF--PVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217 Query: 228 DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEV 283 DD + E+L S K I +G + +A Q+R + M ++ +++ Sbjct: 218 DDPNVKEILPFVS-----KPIIRYGFAPDA--QVRAVNVQARDGKMHFTAMREDAAPLDI 270 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-------CALNQ 336 + G H QN L + I + L +AL+ F+ G G+R++ A Q Sbjct: 271 TLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFN---GVGRRFQRYGEVPVIADGQ 327 Query: 337 --GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 G +TL+D+ Y +P M A ++ P GRR+ + F D + Sbjct: 328 AAGTYTLVDD-YGHHPVEMAATVAAARGAFP---GRRLVLAFQPHRFTRTRDCFE-DFVK 382 Query: 395 VLSLYN---ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVD 443 VLS + ++ V+ +G + D AL R++ V + +T+D + + + + D Sbjct: 383 VLSTVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVVRD 442 Query: 444 GDVVVVKSSNSCG 456 GDVV+ + S G Sbjct: 443 GDVVITMGAGSIG 455 >gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. novicida U112] gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella novicida U112] gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] Length = 479 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 20/223 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ + +DSR + AF A+KG DG+ +I + KG LV+ ++ VF Sbjct: 23 IDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHQFEDQKC----VF 78 Query: 87 GVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + ++ L+ LA K II ITG+ GKT+ + L + +G+ N Sbjct: 79 YIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH-------------IAVITTI 192 I P +D +S+ + + L V H +A+ + + Sbjct: 139 GI-YPDLKESTHTTLDILSLYKTISYYKKYQNLVMEVSSHSLDQKRVEGLDFDVAIFSNL 197 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + HL ++ AKA++F+ ++ +N DD + + L Sbjct: 198 SHDHLDYHKTMDNYFEAKAKLFQ-FKRLKKAIVNIDDEYGQRL 239 >gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] Length = 536 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 102/405 (25%), Positives = 167/405 (41%), Gaps = 49/405 (12%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PL T +L A H+ VP V GI S ++ P + F A+ G H G F A Sbjct: 30 TPLTTVLELTGA---HAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDA 86 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD---DVLGALNKLAVAARLRSKATIIAITGSV 117 V +GA V + + + L++PV + +VLG L+ AV + + +I ITG+ Sbjct: 87 VARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSA-AVYGQPSQRLRLIGITGTS 145 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP--LTLARMP-------VDVDFGIF 165 GKTTT ++ L++ + A IG+ IG VP LT P + V+ G+ Sbjct: 146 GKTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQ 205 Query: 166 ELGM---SH---LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + M SH LG + VR + T ++ HL + E+ +AK +FE Sbjct: 206 AVVMEVSSHALALGRV----DGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSP 261 Query: 220 TG--TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWMEVQ 275 T + DD++ L A G+ + + AD+++ +EQ + Sbjct: 262 VAARTAVVCVDDAWGRRL-----AEGLAAPITVSTTGEADWRVAGGVATVGAEQEFTAAG 316 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G+ + Y++A +L + A +V P G+ R Sbjct: 317 PAGELGVRLRLPGRYNVANALLAVAVCAAARADPAVAAPALATVDVP----GRMQRVERG 372 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ----ISPHGEGRRIAVLG 376 Q F ++D Y PA++++ I+ L + P GR V+G Sbjct: 373 QDFLAVVD--YAHKPAALESVIATLREHLAAADPEHPGRLAVVVG 415 >gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] Length = 493 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82 V + +DSR + + F AI G DG +I A+++GA V+ + G + Sbjct: 25 VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRYQQN 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + ++ + L++LA + ++I +TG+ GKTT +++ L + A +G+ Sbjct: 85 VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144 Query: 143 YNN 145 N Sbjct: 145 TGN 147 >gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] Length = 481 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 QGH F + IS DSR + FFA KG + +++L A+ +G V D Sbjct: 23 QGHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK-KEYLLSAISQGLAWYVAEKDY 80 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT 121 + IPV V+D+ A++ +A+ + K I+A TG+ GKTT Sbjct: 81 -----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124 >gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 35/298 (11%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +++ +IAI+G+ GKTTT M+ L AC YN I V + ++ + G Sbjct: 98 MKNFKNVIAISGTHGKTTTTSMIGYILKK-----AC---YNPTILVGAFVKQLGGNFVIG 149 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E + E FL P I VI I HL F I+ I ++ + + + +G Sbjct: 150 SKEYLVVEACEYVDSFLK--FNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSG 207 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + N DD + + +K H + + AD C++ + E ++ + Sbjct: 208 FLVANCDDKNVKDVISKLHT----QVVCISTKEKADI-FAGNISCND-GYYEFDVKNNND 261 Query: 282 EVVHHGI----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 E++ H G+H N L + S L + T ALS F G +R Sbjct: 262 EILAHIKLNIPGFHNVYNALAAFAVTSKLGVESLTIEHALSEFC---GASRRLEKVGEFD 318 Query: 338 FFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQ 386 L D+ Y +P +KA ++ L ++S PH R ++L + E +L+ Sbjct: 319 GIYLFDD-YAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLKLAD 375 >gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] Length = 493 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----SLS 82 V + +DSR + + F AI G DG +I A+++GA V+ + G + Sbjct: 25 VQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGLVRYQQN 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + ++ + L++LA + ++I +TG+ GKTT +++ L + A +G+ Sbjct: 85 VVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQKAAVMGT 144 Query: 143 YNN 145 N Sbjct: 145 TGN 147 >gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis IP 31758] gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis IP 31758] Length = 438 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 58/367 (15%) Query: 15 QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66 QG + I+ G +D +R + P+ I P G D + +V++ G Sbjct: 5 QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61 Query: 67 ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 L+VV+ M + +LS +++G + ++A ++AITGS GK+ Sbjct: 62 WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +T + + K +IGVP LTL + D + EL L T Sbjct: 118 T----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTVLELSSFQLET----T 167 Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237 H +R A I + H + G+++ +AK ++E + +N DD+ + A Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGA 224 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMA 293 S + SFG D+ L K + + W+ V+ L + M++ G H Sbjct: 225 DSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNY 270 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + + +++KAL+ F G R++ L + I++S N S Sbjct: 271 TNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGST 327 Query: 354 KAAISVL 360 +AA+ L Sbjct: 328 EAALDGL 334 >gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70] gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70] Length = 491 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 17/222 (7%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT M +SSI ++ N G + A + + G + + + Sbjct: 122 IAIAGTHGKTTTTAM----VSSIYAEAGLDPTFVN--GGLVKAAGVHARLGHGRYLIAEA 175 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229 + FL HL +P +A+IT I H+ + G E + L G + DD Sbjct: 176 DESDASFL-HL-QPMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDD 233 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288 L + +G +T ++G S++AD ++ ++Q Q + Q K M V + Sbjct: 234 PVIRELLPR---VGRQTT-TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAP 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 G H A N + + + D + ++AL F +G G+R+ Sbjct: 290 GRHNALNAAAAVAVATEEGIDDEAILRALESF---QGTGRRF 328 >gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] Length = 501 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGV 88 +S DSR FF KG ++ +++ A+++G V S +G + V Sbjct: 40 LSYDSRKADASTLFFC-KGMNF-KEEYLDSAIEQGIQYYVSEQPYENSAVGII------V 91 Query: 89 DDVLGALNKLAVA--ARLRSKATIIAITGSVGKTT----TKEML-------TIALSSIKK 135 D+ A+ LA+A ++K +I TG+ GKTT TK +L T LS++ Sbjct: 92 TDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNKKTALLSTMNT 151 Query: 136 TYACIGSYNNHIGVP--LTLARMPVDVDFGIFELGMSHL----GEIRFLTHLVRP---HI 186 T + +H+ P L L RM + + GM+HL + T V + Sbjct: 152 TLDGKTYFKSHLTTPESLDLYRMMAEA----VKNGMTHLVMEVSSQAYKTQRVYGLTLDV 207 Query: 187 AVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + I+P H+S ++ K ++ + + T+ LN++ +F+LLK + I Sbjct: 208 GIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFDLLKETADLFQI 264 Query: 245 KTIYSFGKSKNADFQL 260 TI ++G+S+ +++Q+ Sbjct: 265 PTI-TYGRSEESNYQV 279 >gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum acetoxidans DSM 771] Length = 449 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 24/192 (12%) Query: 49 PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 P + +D+ L V G L V V SL I V G +L +AAR KA Sbjct: 59 PEFSDNDYDLVVVSPGVPLSV---HPVVKAHSLGIEVIG---------ELELAARF-IKA 105 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFEL 167 ++AITG+ GKTTT ++ I + +IG+PL +V+ +G ++ Sbjct: 106 PVVAITGTNGKTTTTSLI----GEIFRNNGIKTLVAGNIGLPLV-----TEVEKYGPGDI 156 Query: 168 GMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 ++ + + T + RP++AVI I P HL + ++ A AKA I++ + LN Sbjct: 157 IVAEVSSFQLETTVHFRPNVAVILNITPDHLDRHATMQNYAQAKANIYKQQLSSDYTVLN 216 Query: 227 YDDSFFELLKAK 238 YDDS L K Sbjct: 217 YDDSLTASLAVK 228 >gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2] gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PAb1] Length = 469 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 136/322 (42%), Gaps = 45/322 (13%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA ++VV++ + VAS IPV ++L L R R Sbjct: 53 FIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAEL------MRYRHG 106 Query: 108 ATIIAITGSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT ++ A + T+ IG N G L + Sbjct: 107 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTF-VIGGRLNAAGTNAQLG-------ASRY 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL +P +AV+T I H++ + G ++ E L G Sbjct: 156 LVAEADESDASFL-HL-QPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 213 Query: 225 LNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSME 282 + DD E+L + + ++G S++AD + +Q ++W V + + + ++ Sbjct: 214 MCVDDPVVREILPQIA-----RPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLD 268 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC----ALNQGF 338 V + G H N L T+ I + + ++ LS F +G G+R++ + G Sbjct: 269 VSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGF---QGVGRRFQVYGELQVEGGS 325 Query: 339 FTLIDESYNANPASMKAAISVL 360 L+D+ Y +P + A I + Sbjct: 326 VMLVDD-YGHHPREVAAVIKAI 346 >gi|261885649|ref|ZP_06009688.1| Mur ligase family protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 412 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGI 164 S I+ IT S GKT+ K L L Y S N G+ + + + I Sbjct: 89 SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 148 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 E G G+I+ +T + PH ++ I AH+ F IE + + + E Sbjct: 149 AEAGARLKGDIKDITEFLEPHFVIVGEIGNAHIEYFKSIENVRALELE 196 >gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] Length = 921 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%) Query: 6 TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL A+ GI P + +++DSR A + F AIKG DG +I A+ +G Sbjct: 431 NLSDLLGAL-----GIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQG 485 Query: 65 AGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLA 99 V+ VA+ G + IP+ +D++ L+KLA Sbjct: 486 VSAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLA 524 >gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp. X514] gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561] gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513] gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514] gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561] gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513] Length = 464 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 81/365 (22%), Positives = 145/365 (39%), Gaps = 63/365 (17%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA+ GS GKTTT ++++ L + P L VDV G ++G S Sbjct: 112 IAVAGSHGKTTTTSLISVILDGMGFD-------------PTVLVGGEVDVIGGNVKVGNS 158 Query: 171 HLGEIRFLTHLVR---------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 F+T P+IAVI + HL F I+ I + + + G Sbjct: 159 EY----FVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDG 214 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW----KQCSEQSWMEVQLQ 277 + DD+ + + L K I ++G +++D++ + K C + +V + Sbjct: 215 FVVACKDDANTMYV---VNGLN-KNIVTYGIYQDSDWKAKSISFDDKGC---AIFDVYYK 267 Query: 278 GKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + M I G H N L L + ++ D+ A L+ F +G +R+ Sbjct: 268 EEYMGNFKLSIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEF---KGTHRRFEVKGIV 324 Query: 337 GFFTLIDESYNANPASMKAAIS---------VLSQISPHGEGRRIAVLGDMCEMGELSQS 387 T++D+ Y +PA +KA + ++ PH R ++L D E S Sbjct: 325 DGITIVDD-YAHHPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAE------S 377 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443 F D A+ + + +I +++ KD + R V Y + D + ++ + Sbjct: 378 F--DNADKIIIADIYAAREKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKA 435 Query: 444 GDVVV 448 GD+V+ Sbjct: 436 GDLVL 440 >gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi] Length = 523 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 22/212 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I+ DSR++ FFA++G H G +I A+ GA +V + + + + + Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLDTYV--VGVYYA 83 Query: 87 GVDDVLGALNKLAVA-ARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL+ A A ++A T+I +TG+ GK++T + L K I + Sbjct: 84 RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143 Query: 145 NHIG---VP----------LTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHI 186 +G +P LT+ R+ ++ +F + E L V + Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 AV + HL E+ KA +F L+ Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALD 235 >gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica PHL213] gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica PHL213] Length = 475 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 101/434 (23%), Positives = 182/434 (41%), Gaps = 72/434 (16%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA +VVV+T + + + IPV ++L + R R Sbjct: 67 FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEI------MRFRHG 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVDV 160 IAI G+ GKTTT M+++ + K T+ G N H+G L Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGKNAHLGASRYL------- 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 + + + FL HL +P ++V+T I P H+ + G E++ L Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278 G + DD E + + +G + + ++G S+NAD+++ ++Q ++ + V G Sbjct: 223 YGLAVMCADD---ETVMEIAPRVG-RQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSG 278 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCAL 334 + ++V+ + G H A N L + + + AL+ F +G G+R+ Sbjct: 279 ERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADF---QGAGRRFDQLGSFIR 335 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLA 393 G L+D+ Y +P + I Q + G EG+R+ ++ F + Sbjct: 336 PNGKIMLVDD-YGHHPTEVDVTI----QAARSGWEGKRVVMIFQPHRYSRTRDLFD-EFV 389 Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIH-------VHYSETMDGLFLFIQSSL 441 +VLS + + V+ +G + D AL RSI + S+T D L + + Sbjct: 390 QVLSKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDT-DQLGEVLDQII 448 Query: 442 VDGDVVVVKSSNSC 455 DGD+++ + + S Sbjct: 449 QDGDLILAQGAGSV 462 >gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens SK82] gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens SK82] Length = 482 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 49/359 (13%) Query: 56 FILHAVQ--KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI HA K A ++VV+T + V + IPV ++LG L R R Sbjct: 71 FIGHAADNIKNASVLVVSTAIDPENPEVKAAIEQRIPVVRRAEMLGEL------MRYRHG 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+ G+ GKTTT +LT L+ + TY IG N GV L + Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTY-VIGGLLNRTGVNAALG-------ASRY 173 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIF 224 + + + FL HL P A++T I H+ + G + + + L G Sbjct: 174 IVAEADESDASFL-HL-EPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAV 231 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEV 283 + DD+ + + + + ++G + + D + +Q +S V + + + + Sbjct: 232 VCGDDANIREIMPRI----ARPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRL 287 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAI-KALSVFHPKEGRGKRYRC----ALNQGF 338 + G H N L +G+ + D AI +AL F G G+R++ L QG Sbjct: 288 TINQPGLHNVLNALAAIGVATDEGVS-DAAIGRALEGF---SGVGRRFQVQGEFGLEQGT 343 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 L+D+ Y +P ++A I Q P RR+ ++ F D +VLS Sbjct: 344 VKLVDD-YGHHPKEVEATIKAARQSHPD---RRLVMMFQPHRFSRTRDCFD-DFVDVLS 397 >gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] Length = 496 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 21/230 (9%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + +++DSR++ P + F A+ G DG + I A+ +GA V + + P+ Sbjct: 18 LIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGASVLPLTDAPL 77 Query: 86 FGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V ++ L+ +A R + + ++ +TG+ GKT+ +++ AL + + IG Sbjct: 78 IPVKGLIAQLSD--IAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARM----PVDVDFGIFEL--GMSHLGEIRFLTHLVRP--------HIA 187 + L R+ P+ V + +L G + + +H + IA Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 V+T ++ HL +E +AKA++F +N DD F L A Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLF-AWPSLRCQVVNLDDDFGRRLAA 244 >gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus fusiformis ZC1] gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus fusiformis ZC1] Length = 449 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 22/222 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A L S A I ITGS GKTTT ++ LS K G+ V +A+ D Sbjct: 106 AFLISDAPFIGITGSNGKTTTTTLIFDMLSKGSKNPLIAGNIGT---VACGVAKEANQDD 162 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L I+ +P IA++T + AHL A AK + + + Sbjct: 163 IIVTELSSFQLMGIKTF----KPKIAILTNLYDAHLDYHGTFNNYAEAKFGVTRNQDDSD 218 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQG 278 N D A+SHA I S G++ N AD W+ + L G Sbjct: 219 YFIYNADQPIVVGYAAQSHAQKIP-FSSKGRTANGISADETTIYWQGEPYMDRANIALPG 277 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K H +N+L + ++ D + + L+ F Sbjct: 278 K-----------HNLENILAAVAACILVGCDKEKMEEVLATF 308 >gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisB18] gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 467 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 77/339 (22%), Positives = 128/339 (37%), Gaps = 48/339 (14%) Query: 64 GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 GA +VVV+T + L IPV ++L L +L + +AI G+ Sbjct: 66 GADVVVVSTAIKRDNPELLAARAQRIPVVRRAEMLAELMRLK---------SCVAIAGTH 116 Query: 118 GKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+ L + + I G N G T AR+ G E + E Sbjct: 117 GKTTTTSMVAALLDAGEFDPTVINGGIINAYG---TNARL------GAGEWMVVEADESD 167 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +A++T + P HL +F + + A + E + G + D + L Sbjct: 168 GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEAFRDFVENVPFYGFAVMCIDHPVVQALV 227 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-------GIG 289 K + + I ++G++ AD +L S V + + H G Sbjct: 228 GK---IEDRRIITYGENPQADVRLLDLTPNGGSSAFRVAFRDRKAGTAHEIADLVLPMPG 284 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A N + + L DT KAL+ F G +R+ T+ID+ Y + Sbjct: 285 RHNALNATAAIAVAHELGLSDDTIRKALAGFG---GVRRRFTKTGEWNGVTIIDD-YGHH 340 Query: 350 PASMKAAI---------SVLSQISPHGEGRRIAVLGDMC 379 P + A + V++ + PH R ++ + C Sbjct: 341 PVEIAAVLKAARESTKGKVIAVVQPHRFTRLQSLFEEFC 379 >gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] Length = 476 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 20/258 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + L + + + +V + +S +S+ I + F A+ G DGH++I A++ G Sbjct: 1 MSIQKLFKNVDYRVLTLVEEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +++ D +++ V + D LG ++ ++K IIA+TG+ GKTTT Sbjct: 61 AKMIIAERDDYPYPKDITVVLVKNLRDNLGYISS-NFYNFPQNKLKIIAVTGTNGKTTTT 119 Query: 124 EMLTIALSSIKKTYACIGS---------YNNHIGVP-----LTLARMPVDVDFGIFELGM 169 +L SI K A IG+ Y P + L + VD + F + + Sbjct: 120 YIL----ESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEV 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + ++ A+ T + HL +E+ AKA I L+ + +N DD Sbjct: 176 SSHALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPNARLIINKDD 235 Query: 230 SFFELLKAKSHALGIKTI 247 + L S + +K + Sbjct: 236 KYCNRLLNVSDSFSLKEV 253 >gi|91762843|ref|ZP_01264808.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718645|gb|EAS85295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 431 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I ITG+ GK+TT ++L L KK +G +IG P+ L + + E Sbjct: 107 ITITGTNGKSTTAKLLYDILKDQKKDVRLVG----NIGNPVLLEKKIKKDTLFVIEASSY 162 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L + L + +I++I I+P HL I + SAK ++ + K LN + Sbjct: 163 QLE----YSKLFKTNISLILNISPDHLERHKTINKYVSAKFKLIKNQSKNDIAILNTKNF 218 Query: 231 FFEL-LKAKSHALGI 244 + + LK K A I Sbjct: 219 YIKRKLKQKKFAPSI 233 >gi|71082735|ref|YP_265454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter ubique HTCC1062] gi|71061848|gb|AAZ20851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter ubique HTCC1062] Length = 431 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I ITG+ GK+TT ++L L KK +G +IG P+ L + + E Sbjct: 107 ITITGTNGKSTTAKLLYDILKDQKKDVRLVG----NIGNPVLLEKKIKKDTLFVIEASSY 162 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L + L + +I++I I+P HL I + SAK ++ + K LN + Sbjct: 163 QLE----YSKLFKTNISLILNISPDHLERHKTINKYVSAKFKLIKNQSKNDIAILNTKNF 218 Query: 231 FFEL-LKAKSHALGI 244 + + LK K A I Sbjct: 219 YIKRKLKQKKFAPSI 233 >gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] Length = 487 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 80/375 (21%), Positives = 141/375 (37%), Gaps = 47/375 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLS 82 V + DSR + + F AIKG DGH FI A+ GA +V T +V + + Sbjct: 23 MVGTLCFDSRKVKLDDVFVAIKGTLTDGHKFIEKAIDSGAVCIVCETMPEQLVNGVTYVE 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML---------------T 127 + + A N ++ ++ ITG+ GKTT +L T Sbjct: 83 VDSGNKALAIMASNYYDNPSK---NLKLVGITGTNGKTTISSLLYQLFKKAGFKVGLIST 139 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHI 186 I + K YA + + + + L M + V+F E+ + + R T + Sbjct: 140 IKIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFMEVSSHGIHQKR--TEGLVFEG 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL E K +F+ L K N DD ++ + A Sbjct: 198 AIFTNLTHDHLDYHKTFAEYRDTKKSLFDKLPKNAFALTNVDDKNGLVMLQNTAARK--- 254 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----IGYHMAQNMLMTLG 301 +++ AD++ + +E Q G+ ++V IG+ A N+L Sbjct: 255 -FTYALKSYADYRAQ---------ILENQFDGQLLKVDDDELWTKLIGHFNAYNVLAIYA 304 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L + ++ LS +GR + Y + ++D Y P ++K + + Sbjct: 305 TADLLGLEKLETLRLLSELDNVDGRFQYYISK--EKITAIVD--YAHTPDALKNVLETIG 360 Query: 362 QISPHGEGRRIAVLG 376 + G I V+G Sbjct: 361 TLRT-GNENVITVVG 374 >gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] Length = 495 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 101/393 (25%), Positives = 159/393 (40%), Gaps = 51/393 (12%) Query: 18 SIGIVPQG------FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 ++G+ P G V G+++DSR + P F A+ G G F+ A+ GA ++ + Sbjct: 10 ALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAILTD 69 Query: 72 TDMVASIGSLSIPVFGVDDVLG--ALNKLAVAARL---RSKATIIAITGSVGKTT----T 122 A G VL LA AA L R AT++A+TG+ GKT+ T Sbjct: 70 AAGAALAREALA-GSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATFT 128 Query: 123 KEM--------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM---S 170 +++ + I + ++ +A ++ P+TL R+ + + G+ M S Sbjct: 129 RQIWAALGHAAINIGTTGVEGAFAAPSAHTTP--EPITLHRLLAEAAEAGVTHAAMEASS 186 Query: 171 HLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNY 227 H E R L HL A T HL E +AKA +F L GT +N Sbjct: 187 HGLEQRRLDGVHLA---AAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNL 243 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVH 285 DD + A + A + I G +AD LR Q + + +++ QG+ Sbjct: 244 DDPRGPEIAALARARAQRVI---GTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARL 300 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-RGKRYRCALNQ-GFFTLID 343 IG A N+ + S+ D + + F +G RG+ A Q G +D Sbjct: 301 PLIGGFQAWNVAVA---ASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVD 357 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ A+ L PH GR + V G Sbjct: 358 --YAHTPDALATALKAL---RPHVMGRIVVVFG 385 >gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides] Length = 450 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 37/266 (13%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 S+A + ITGS GKTTT ML + K + I +IG T+A V D Sbjct: 110 SEAPFVGITGSNGKTTTT-MLAFEMLKEGKKHPVIAG---NIG---TVA-CEVAQDAKEN 161 Query: 166 ELGMSHLGEIRFL-THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ ++ L + + + +P IA + AHL EE AKA IF+ +T Sbjct: 162 EVVVTELSSFQLMGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDYSV 221 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQCSEQSWMEVQL 276 +N DD+ L A+S G K ++S K +NA + K ++ +E S ++ L Sbjct: 222 INADDADVMTLSAQSK--GQKVLFSTTKEIEDGAYIKENALY--YKGEKVAEVS--DIVL 275 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 GK H +N+L + I +L + L F + R + N+ Sbjct: 276 PGK-----------HNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNR 324 Query: 337 GFFTLIDESYNANPASMKAAISVLSQ 362 F+ ++S N + + A+S +Q Sbjct: 325 KFY---NDSKATNMLATEKALSAFTQ 347 >gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 441 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 33/215 (15%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + ++ ITG+ GK+TT T + I K +IG+PL LA P+ D Sbjct: 117 RHGRRCPVVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DG 170 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G++ L +S +I LT + IAV+T I P HL G E AK +F Sbjct: 171 GVYVLELSSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHY 228 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + DD +++ AK A + T+++ + +A+ Q+ +W +Q Sbjct: 229 AVIATDDIPSQVI-AKQSAAHLVTVHA--DNISAEDQI---------NWPNLQ------- 269 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 G H AQN ++ + + IL D KAL Sbjct: 270 ------GPHNAQNAVLAMAVAHILGISDDVISKAL 298 >gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 493 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 102/440 (23%), Positives = 173/440 (39%), Gaps = 93/440 (21%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 K A +VVV N +++A+ IPV ++L L R R IAI G Sbjct: 77 KNASVVVVSSAIPEDNPEILAA-HEARIPVIQRAEMLAEL------MRFRHG---IAIAG 126 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH--LG 173 + GKTTT M + YA G P V+ G+ + H LG Sbjct: 127 THGKTTTTAM-------VASIYAQAGLD-------------PTFVNGGLIKAAGKHAQLG 166 Query: 174 EIRFL-----------THLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTG 221 R+L HL +P +A++T I H+ + G E + L G Sbjct: 167 SSRYLIVEADESDASFIHL-QPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYG 225 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280 L DD L + + I ++G S++AD ++ ++Q S+ ++ K Sbjct: 226 RAILCIDDQVIRTLLPRI----ARHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKPI 281 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-------A 333 +++ + G H A N + + + + + ++ALS F +G G+R+ C Sbjct: 282 LKIQLNAPGRHNALNAAAAVAVATEEGVEDEHILQALSFF---QGTGRRFDCLGIFPLQP 338 Query: 334 LN--QGFFTLIDESYNANPASMKAAIS----------VLSQISPHGEGRRIAVLGDMCEM 381 +N QG LID+ Y +P + A I ++ PH R + D + Sbjct: 339 VNGQQGEVMLIDD-YGHHPTEVAATIKAARVGWPTKRLVMIFQPHRYSRTRDLYDDFVNV 397 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSETMDGLFLF 436 LSQ +D+ +L +Y+ + AL D++ H V E + L Sbjct: 398 --LSQ---VDILLMLEIYSAGESPIPDISSCALCDSIRDFSHRMPILVTDHEKLPSL--- 449 Query: 437 IQSSLVDGDVVVVKSSNSCG 456 + L + D+V+V+ + + G Sbjct: 450 LAKQLKENDMVLVQGAGNIG 469 >gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3548] gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3548] Length = 451 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 11/186 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +AITG+ GKTTT +L L + K + + +G + A + V+ G +L + Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIE 158 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL + P + +IT I H++ ++ + F E +I+L DD Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L AK + K + S+G S NAD Q+ + E + +++ +G + G Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275 Query: 290 YHMAQN 295 + QN Sbjct: 276 KYNVQN 281 >gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 467 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 75/359 (20%), Positives = 145/359 (40%), Gaps = 35/359 (9%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +R+ T +AI+G+ GKTTT M++ L + G + I V L + ++ G Sbjct: 115 MRNYDTPVAISGTHGKTTTTSMVSHILLA--------GDCDPTISVGGILPAIGGNIRVG 166 Query: 164 IFELGMSHLGEI--RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 E ++ E FL+ P I++I + HL F I++I + E L G Sbjct: 167 NSETFVTEACEYTNSFLSFF--PKISIILNMDADHLDFFKDIDDIRHSFRRFAELLPADG 224 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279 T+ +N D +E + + ++G +AD+Q + + S+ ++ K Sbjct: 225 TLIINADTPKYEDIIRDLPC----NVITYGLEHDADYQAADITYDKYGHASFSVLRNGVK 280 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G H N L + + +L + IK L F G +R++ Sbjct: 281 VGSYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSF---TGTDRRFQYKGEVAGV 337 Query: 340 TLIDESYNANPASMKAAI---------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 T++D+ Y +P ++A + + PH R A+L + + LS + H+ Sbjct: 338 TIVDD-YAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAKA--LSLADHV 394 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A++ + + +S + L Y T D + ++ S+ +GD+++ Sbjct: 395 VVADIYAARETDTLGISSEDLQKRIQEL--GTPCEYFPTFDEIENYLLSNCQEGDLLIT 451 >gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM 16992] gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM 16992] Length = 480 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 38/278 (13%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A I ITG+ GKT+T EM + L++ T +G +IG ++ A + D EL Sbjct: 104 AQWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG----NIGKAVSHAAVDPANDVLCVEL 159 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L T + A IT IA HL GI+ A+ KA++F ++K + N Sbjct: 160 SSFQL----HFTDSLALDCAAITNIADDHLDWHGGIDNYAADKAKVFHRVKK--ALVYNA 213 Query: 228 DDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-------- 278 DD L A A G + + F S+ D Q+ + W+ V + G Sbjct: 214 DDERVTRLAFAAETAEGCRKV-GFTLSEPQDGQI-----GVKDGWI-VDMSGIAGGKPGT 266 Query: 279 -----KSMEVVH----HGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + E H G Y H+ + L L +V L AD + AI +L F P R + Sbjct: 267 PEQVAEVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKRFTPGGHRIQ 326 Query: 329 RYRCALNQ--GFFTLIDESYNANPASMKAAISVLSQIS 364 A Q G +D+S N + KA+++ + S Sbjct: 327 TVATATTQDGGSIRFVDDSKATNAHAAKASLNSFADKS 364 >gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 482 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%) Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT I H+S + + E + A E L G + DD + + + Sbjct: 187 PTVEIITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYGYAVICIDDPAIRSVLSNVN-- 244 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLG 301 + I ++G SK+AD + + Q E+S V ++ K +E++ + GYH N ++G Sbjct: 245 --RKIITYGFSKDADLCILNYHQYREKSKFTVLIKNKKKLEIILNIPGYHNVLNATASIG 302 Query: 302 IVSILTADVDTAI-KALSVFHPKEGRGKRYRCALNQGFFTL-----------IDESYNAN 349 VSI D I +A+ F +G +R+ N GF++L I + Y + Sbjct: 303 -VSIEEGIPDLVILRAMLNF---QGTNRRFE---NLGFYSLKQINGRVGKVMIVDDYGHH 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLG--DMCEMGELSQSF-----HIDLAEVLSLY 399 P + A I+ + P + R I V EL SF +D+ +L++Y Sbjct: 356 PTELHATIATVRSGWP--DKRLIMVFQPHRFTRTCELYDSFIHVLSTVDVLLILNVY 410 >gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 441 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 33/215 (15%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + ++ ITG+ GK+TT T + I K +IG+PL LA P+ D Sbjct: 117 RHGRRCPVVGITGTNGKSTT----TALIHHILKEAGLPTLMGGNIGLPL-LAADPLP-DG 170 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G++ L +S +I LT + IAV+T I P HL G E AK +F Sbjct: 171 GVYVLELSSY-QID-LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHY 228 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + DD +++ AK A + T+++ S + +W +Q Sbjct: 229 AVIATDDIPSQVI-AKQSAAHLVTVHADNISAE-----------DQVNWPNLQ------- 269 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 G H AQN ++ + + IL D KAL Sbjct: 270 ------GPHNAQNAVLAMAVAHILGISDDVISKAL 298 >gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis YPIII] gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis YPIII] Length = 438 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 37/262 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 ++A ++AITGS GK+T +T + + K +IGVP LTL + D + Sbjct: 103 NQAPVVAITGSNGKST----VTTLVGEMAKAAGWSVGVGGNIGVPALTLLKQ--DNQLTV 156 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 EL L TH +R A I + H + G+++ +AK ++E + Sbjct: 157 LELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VC 209 Query: 224 FLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQG 278 +N DD+ + A S + SFG D+ L K + + W+ V+ L Sbjct: 210 VVNADDALTMPVRGADSRCI------SFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNT 259 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + M++ G H N L L + + +++KAL+ F G R++ L + Sbjct: 260 REMKLS----GRHNYTNALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHG 312 Query: 339 FTLIDESYNANPASMKAAISVL 360 I++S N S +AA+ L Sbjct: 313 VRWINDSKATNVGSTEAALDGL 334 >gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ] gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ] Length = 456 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 25/268 (9%) Query: 111 IAITGSVGKTTTKEMLTIALS--SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 IAI G+ GKTTT M+ L+ I T IG N +G L + G F + Sbjct: 108 IAIAGTHGKTTTTSMVATVLTHAGIDPTI-VIGGKLNTLGSNAKLGQ-------GKFLVA 159 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227 + + FLT + P IAV+T I HL ++ G+E+I + G L Sbjct: 160 EADESDGSFLT--LSPTIAVVTNIDADHLDYYTGGLEQIKDTFVSFINKVPFYGLAVLCQ 217 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286 +D + + K ++G S AD + K Q+ +G + E+ + Sbjct: 218 EDRNINEIIPRIK----KRFMTYGLSSQADLRATHVKLDGFQTTFTAHYKGYRLGEISFN 273 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + L D + + F G G+R+ + ++D+ Y Sbjct: 274 MPGAHNVLNALACTAVALELDVPFDKIQEGFAQFG---GVGRRFTVKGEKNGIMVVDD-Y 329 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAV 374 +PA ++A + P RR+ V Sbjct: 330 GHHPAEIRATLGAARNGWPE---RRLVV 354 >gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella cibaria KACC 11862] Length = 447 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGM 169 IA+TGS GKTTT EM+ L + + I N IG P++ +A D D + EL Sbjct: 106 IALTGSNGKTTTTEMIAAVLRTQATSDHQIVVAGN-IGTPVSEVAPSLRDTDTLVTELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L +P+IA+IT I +HL E +AK I + + +NYD Sbjct: 165 FQL----MGMPEAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKNQTADDYLVINYDR 220 Query: 230 SFFELLKAKSHA 241 + + L ++ A Sbjct: 221 AEWRELAQQTAA 232 >gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister microaerophilus UPII 345-E] gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister microaerophilus UPII 345-E] Length = 449 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +KA+I+A+TG+ GKTTT ++L + L + K +A G ++GV L+ +D + I Sbjct: 102 TKASILAVTGTNGKTTTTKLLGLMLKNSGKKFAVAG----NLGVSLSDKADLID-EKSII 156 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S ++ F+ + +P A I I P HL +E AKA IFE + I L Sbjct: 157 AAEVSSF-QLEFIKNF-KPKAAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL 214 Query: 226 NYDDSF 231 N DD + Sbjct: 215 NADDKY 220 >gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychroflexus torquis ATCC 700755] gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychroflexus torquis ATCC 700755] Length = 447 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IF 165 A II ITGS GKTT M+ L + + + G+ V + A F + Sbjct: 102 ANIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGN------VGFSFAEQVARQSFHNYVL 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224 EL L + RPHIA++T+I P HL + +E AK +I + K + Sbjct: 156 ELSSFQLDGVEDF----RPHIAILTSITPDHLDRYHDNFQEYIQAKFKITKNQTKDDFLI 211 Query: 225 LNYDD 229 N DD Sbjct: 212 YNKDD 216 >gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC 33393] gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC 33393] Length = 476 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 107/453 (23%), Positives = 181/453 (39%), Gaps = 86/453 (18%) Query: 56 FILHAVQK--GAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 FI H + GA +VV+ N ++VA+ IPV +L L R R Sbjct: 67 FIGHKAENITGASVVVISSAIRDDNPEVVAA-KEARIPVIQRAQMLAEL------MRFRH 119 Query: 107 KATIIAITGSVGKTTTKEMLTI--ALSSIKKTYACIG-----SYNNHIGVPLTLARMPVD 159 IA+ G+ GKTTT M+++ A + + T+ G N H+G L + Sbjct: 120 G---IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKSAGTNAHLGRSRYLIAEADE 176 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 D L +P I+++T I P H+ + G +E+ L Sbjct: 177 SDASFLHL---------------QPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLP 221 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQ 277 G L DD+ L + +G + + ++G S+NAD+++ ++Q Q + + Sbjct: 222 FYGLAVLCADDADLMSLVPQ---VG-RQVITYGFSENADYRIEDYQQTGFQGHYTVICPS 277 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ- 336 G+ ++V+ + G H A N L + + + AL+ F +G G+R+ L Q Sbjct: 278 GERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADF---QGAGRRFD-QLGQF 333 Query: 337 ----GFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMG 382 G L+D+ Y +P + I Q PH R + D ++ Sbjct: 334 IRPNGKVMLVDD-YGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQV- 391 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFL 435 LSQ +D +L +Y + G A AL RSI V S+T L Sbjct: 392 -LSQ---VDALIMLDVYPAGEAPIVG----ADSKALCRSIRNLGKVDPVLVSDTAQ-LGE 442 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + DGD+++ + + S +L L+E + Sbjct: 443 VLDHLIQDGDLILAQGAGSVS--KLSRQLVERW 473 >gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia magna BVS033A4] gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia magna BVS033A4] Length = 441 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 19/232 (8%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 L +A R+ I+AITG+ GKTTT ++T L+ + IG +IGV + Sbjct: 88 LELAQRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIG----NIGVGMLWEIYN 143 Query: 158 VDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D D + + E L T +P + I I P H+ ++ +AK + + Sbjct: 144 SDKDTYFVIECSSFQLES----TKHFKPQYSCIINITPDHIDWHGSMKNYVNAKKNVLKN 199 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEV 274 ++ LN DD ++E K + A IY SKN + ++ S+ + Sbjct: 200 QDENCYTVLNADDEYYEECKKFTKA----NIYDISTSKNIERGSFIKDNSIYFSDSYCDK 255 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + K +++ IGYH QN+L + + ++ + D+ + L F E R Sbjct: 256 IIDLKDVKL----IGYHNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHR 303 >gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 475 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 101/434 (23%), Positives = 182/434 (41%), Gaps = 72/434 (16%) Query: 56 FILHAVQK--GAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 FI H + GA +VVV+T + + + IPV ++L + R R Sbjct: 67 FIGHQAENIAGASVVVVSTAIDETNPEIIAAREARIPVIRRAEMLAEI------MRFRHG 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK--KTYACIG-----SYNNHIGVPLTLARMPVDV 160 IAI G+ GKTTT M+++ + K T+ G N H+G L Sbjct: 121 ---IAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAGKNAHLGASRYL------- 170 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEK 219 + + + FL HL +P ++V+T I P H+ + G E++ L Sbjct: 171 ------IAEADESDASFL-HL-QPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPF 222 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQG 278 G + DD E + + +G + + ++G S+NAD+++ ++Q ++ + V G Sbjct: 223 YGLAVMCADD---ETVMEIAPRVG-RQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSG 278 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY----RCAL 334 + ++V+ + G H A N L + + + AL+ F +G G+R+ Sbjct: 279 ERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADF---QGAGRRFDQLGSFIR 335 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLA 393 G L+D+ Y +P + I Q + G EG+R+ ++ F + Sbjct: 336 PNGKIMLVDD-YGHHPTEVDVTI----QAARSGWEGKRVVMIFQPHRYSRTRDLFD-EFV 389 Query: 394 EVLSLYN---ISHVWLSGFHVLALKD--ALPRSIH-------VHYSETMDGLFLFIQSSL 441 +VLS + + V+ +G + D AL RSI + S+T D L + + Sbjct: 390 QVLSKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDT-DQLGEVLDQII 448 Query: 442 VDGDVVVVKSSNSC 455 DGD+++ + + S Sbjct: 449 QDGDLILAQGAGSV 462 >gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. novicida U112] gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. novicida FTE] gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG] gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112] gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. novicida FTE] gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG] Length = 451 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 11/186 (5%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +AITG+ GKTTT +L L + K + + +G + A + V+ G +L + Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFV------VGGVVKYADSNIQVN-GTDKLVIE 158 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + + FL + P + +IT I H++ ++ + F E +I+L DD Sbjct: 159 ADESDASFL--FLSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDD 216 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L AK + K + S+G S NAD Q+ + E + +++ +G + G Sbjct: 217 QGCRDLLAK-YNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPG 275 Query: 290 YHMAQN 295 + QN Sbjct: 276 KYNVQN 281 >gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis KIM 10] gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Antiqua] gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Nepal516] gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Pestoides F] gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CA88-4125] gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Angola] gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis FV-1] gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis CO92] gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Pestoides A] gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Nepal516] gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis KIM D27] gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Z176003] gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM 10] gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Nepal516] gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Antiqua] gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CO92] gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Pestoides F] gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CA88-4125] gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Angola] gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Nepal516] gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Pestoides A] gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis D106004] gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis D182038] gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis KIM D27] gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Z176003] gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 438 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 149/366 (40%), Gaps = 56/366 (15%) Query: 15 QGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG----- 66 QG + I+ G +D +R + P+ I P G D + +V++ G Sbjct: 5 QGKKVVIIGLGLTGLSCVDFFIARGVTPRVMDTRINPP---GLDQLPESVEQHVGDLNQE 61 Query: 67 ------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 L+VV+ M + +LS +++G + ++A ++AITGS GK+ Sbjct: 62 WLLDADLIVVSPGMALAHPALSEAAEAGVEIIGDIELFC----RENQAPVVAITGSNGKS 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T + T+ K +G N IGVP LTL + D + EL L T Sbjct: 118 T---VTTLVGEMAKAAGWSVGGGGN-IGVPALTLLKQ--DNQLTVLELSSFQL----ETT 167 Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 H +R A I + H + G+++ +AK ++E + +N DD+ ++ Sbjct: 168 HSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAK---VCVVNADDALTMPVRGA 224 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQ 294 SFG D+ L K + + W+ V+ L + M++ G H Sbjct: 225 D-----SRCISFGVDV-GDYHLNKQQG---EIWLRVRGEKVLNTREMKLS----GRHNYT 271 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L L + + +++KAL+ F G R++ L + I++S N S + Sbjct: 272 NALAALALADAVGIPRASSLKALTTF---SGLPHRFQLVLERHGVRWINDSKATNVGSTE 328 Query: 355 AAISVL 360 AA+ L Sbjct: 329 AALDGL 334 >gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes DSM 40736] gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes DSM 40736] Length = 463 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 30/257 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVF 86 D++ A EA A+ + GH + A VVV++ + +A L IPV Sbjct: 40 DAKESATAEALRALGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVV 97 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--IKKTYACIGSYN 144 D L AL LR IA+ G+ GKTTT ML ++LS+ + +YA G + Sbjct: 98 HRSDALAALMT-----GLRP----IAVAGTHGKTTTTSMLAVSLSALGLSPSYAIGGDLD 148 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 P + A G E+ ++ E H P +A++ + H +N++ ++ Sbjct: 149 ----APGSNAL------HGEGEIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMD 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 EI + + + GT+ ++ D L + ++ + ++G+S++A ++ Sbjct: 199 EIYESFETFVDRVTPGGTLVISADHEGARELTRRVAGRDVRVV-TYGESQDAGVRVLSVV 257 Query: 265 QCSEQSWMEVQLQGKSM 281 +S + V L G+ + Sbjct: 258 PQGLKSEVTVVLDGEEL 274 >gi|329117290|ref|ZP_08246007.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis NCFD 2020] gi|326907695|gb|EGE54609.1| UDP-N-acetylmuramate--L-alanine ligase [Streptococcus parauberis NCFD 2020] Length = 443 Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 T + G+ GKT+T +L+ L +I T IG R + + +FE Sbjct: 104 TSFGVAGAHGKTSTTGLLSHVLKNITDTSYLIGD---------GTGRGSANAQYFVFE-- 152 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S E F+ + P ++IT I H F+GIE++ +A + + ++K +F+ + Sbjct: 153 -SDEYERHFMPY--HPEYSIITNIDFDHPDYFTGIEDVFAAFNDYAKQVKK--ALFVYGE 207 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HG 287 D EL K ++A IY +G S +F ++ + S +V+ G+ + H Sbjct: 208 DP--ELKKISANA----PIYYYGFSDEDNFTAYDIRRTTNGSDFKVKHDGQEIGDFHVPA 261 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N + + I D+D K + F+ G + R T+I + + Sbjct: 262 YGKHNILNATAVIANLFIAGFDMDLVAKHMVSFN-----GVKRRFTEKIINDTIIIDDFA 316 Query: 348 ANPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMC 379 +P + A I Q PH R IA+L + Sbjct: 317 HHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIALLDEFA 358 >gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus AQ3810] gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus K5030] gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AN-5034] gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus Peru-466] gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus AQ3810] gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus Peru-466] gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AN-5034] gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus K5030] Length = 437 Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 54/266 (20%) Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++AITGS GK+T ++ + + T G +IGVP L + D D + EL Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLTVGVGG----NIGVP-ALELLEQDADLYVLELSS 164 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L T ++ A ++ H+ + G+ + +AK IF+ E +N DD Sbjct: 165 FQLET----TSSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDHAE---LAVVNRDD 217 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-- 287 +++ + +FG S++ +++ G ++ HG Sbjct: 218 Q-------ETYPEVEMPVVTFG---------------SDEQAYGLEVDGSRTWLLDHGQR 255 Query: 288 ---------IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALN 335 +G H N L+ L ++ D A+ AL K G +RC A N Sbjct: 256 VIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNAL-----KNYTGLTHRCQVVADN 310 Query: 336 QGFFTLIDESYNANPASMKAAISVLS 361 +G +++S N AS AA+S L Sbjct: 311 RG-VKWVNDSKATNIASTMAALSGLE 335 >gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] Length = 513 Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 27/250 (10%) Query: 4 LWTFHDLLQAI---QGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 L D+L++I G S G G V G++ DSR++ P + + A+ G H H Sbjct: 16 LTALPDVLRSITVAPGPSGGAALAGVVLTGVTHDSRAVLPGDLYAALPGAHV--HGADFA 73 Query: 60 AVQKGAGLVVVNTDMVASI---GSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAIT 114 A AG V V TD V + G L++PV DD L A + S T++ +T Sbjct: 74 AGAVAAGAVAVLTDPVGAAALSGRLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVT 133 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFELGMSH 171 G+ GKTTT +L L + T +G+ + VP ++ P D M Sbjct: 134 GTNGKTTTAFLLDAGLRAAGYTTGLLGTVQTRVAGTVVP-SVRTTPESGDLQALLATMVE 192 Query: 172 LG----EIRFLTHLVRPHI--------AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 G + +H + H A T ++ HL +E+ +AKA +FE Sbjct: 193 RGVGAASMEVSSHALAQHRVDALRFAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEPARS 252 Query: 220 TGTIFLNYDD 229 + DD Sbjct: 253 AAAVVCVDDD 262 >gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM 16841] gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM 16841] Length = 459 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 41/355 (11%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IA++G+ GKTTT M++ L + KK + I V L + ++ G ++ +S Sbjct: 114 IAVSGTHGKTTTTSMISQILLAAKK--------DPTITVGGILKAIDGNLRVGKSDVFIS 165 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-D 229 E RP ++I I HL F I +I ++ + ++ G I +N + + Sbjct: 166 EACEYTNSFLNFRPKYSIILNIEAEHLDFFKDIHDIRNSFHLFAKNTKENGAIIINGEIE 225 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQCSEQSWMEVQLQG-KSMEVV 284 ++ E+++ + + ++G S DF K C+ + M G K M+V Sbjct: 226 NYQEIVEGLA-----PQVITYGMSDACDFYPADITFNEKACANFTAM---YHGEKVMDVA 277 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + G H N L + + L + + LS F + R + C T+ID+ Sbjct: 278 LNVPGLHNVSNALAAIALALDLKISKEDILAGLSAFGGADRRFQYKGCVDG---VTVIDD 334 Query: 345 SYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 Y +P ++A ++ + PH R A L D E+ LS + + LA++ Sbjct: 335 -YAHHPTEIRATLTAAKKYPHKRLVLVFQPHTYSRTKAFLNDFAEV--LSMADVVVLADI 391 Query: 396 LSLYNISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +S + A LK+ + VHY + + F+ + ++GD+++ Sbjct: 392 YAAREKNTFGISSRDIEAKLKE---KGTDVHYFPSFTEIENFLLKNCINGDLLIT 443 >gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 460 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 122/324 (37%), Gaps = 59/324 (18%) Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L IP+ ++LG + ++ IA+ GS GKTTT ++++ + Sbjct: 92 ELGIPLADRAEMLGQI--------MKKYEKAIAVAGSHGKTTTTSLISLLME-------- 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR---------PHIAVIT 190 Y+N P L +D G ++G S F+T P I +I Sbjct: 136 ---YSN--LDPTILVGGELDEIGGNIKIGQSQ----HFITEACEYVESFLKFYPFIGIIL 186 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHAL--GIKT 246 I HL F IE I SA + + + K G + +YDD+ + H + GIKT Sbjct: 187 NIDEDHLDYFKDIEHIKSAFKKFAQRIPKEGFLIASYDDAHVREISRDLDCHVITYGIKT 246 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSI 305 F + N +F +V +GK++ I G H N L + + Sbjct: 247 KSQF-MAHNIEFSFEGLPS------FDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATTYV 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ--- 362 L D K ++ F +G +R+ +ID+ Y +P ++A + + Sbjct: 300 LGVDPVAISKHITRF---KGIHRRFDLLGEVKGAKVIDD-YAHHPVEIRATLEAAKKYPH 355 Query: 363 ------ISPHGEGRRIAVLGDMCE 380 PH R A+L D + Sbjct: 356 KKIWCVFQPHTYSRTQALLKDFAK 379 >gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703] gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703] Length = 486 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 87/386 (22%), Positives = 147/386 (38%), Gaps = 78/386 (20%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAI G+ GKTTT ++T YA G P V+ G+ + + Sbjct: 122 IAIAGTHGKTTTTAIVT-------SIYAEAGLD-------------PTFVNGGLVKAAGT 161 Query: 171 H--LGEIRFLT-----------HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216 H LG R+L HL +P +A++T I H+ + G E + Sbjct: 162 HARLGSSRYLIAEADESDASFLHL-QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN 220 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L G + DD L + +G + I ++G S +AD ++ ++Q Q + Sbjct: 221 LPFYGHAVMCLDDPVIRELLPR---VG-RHITTYGFSDDADVRVADYRQVGAQGLFTLAR 276 Query: 277 QGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---- 331 QGK + V + G H A N + + + + D ++AL F +G G+R+ Sbjct: 277 QGKPLLNVTLNAPGRHNALNAAAAVAVATEEGIEDDAILRALERF---QGTGRRFDFLGE 333 Query: 332 -----CALNQGFFTLIDESYNANPASMKAAISVLSQ----------ISPHGEGRRIAVLG 376 G L+D+ Y +P + A I PH R + Sbjct: 334 FPLEPVNGKSGAVMLVDD-YGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYD 392 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS------ETM 430 D + LSQ +D+ +L +Y + G A +L R+I + Sbjct: 393 DFAHV--LSQ---VDVLLMLDVYPAGEAPIPG----ADSRSLCRTIRGRGKIDPIMVPDV 443 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCG 456 + L + +L +GD+V+ + + S G Sbjct: 444 ENLPELLAQALQNGDLVLAQGAGSVG 469 >gi|224532317|ref|ZP_03672949.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116] gi|224511782|gb|EEF82188.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116] Length = 468 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 25/184 (13%) Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYAC 139 L+IP+ + LG L++ K I I GS GKTTT L I + + Sbjct: 96 LNIPILSYPEALGELSR---------KYYSIGIAGSHGKTTTTAFLGIVFNKLGLNPNVI 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHL 197 +GS G +A GI + + E + H + P++ ++T + H+ Sbjct: 147 VGSSVKDFGGNSAIA--------GISNIFIVETCEYK--KHFLHFSPNMLILTNVDYEHV 196 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH-ALGIKTIYSFGKSKNA 256 F E + A + L+K G + +N DD+ LLK K + I+SFG + Sbjct: 197 DFFKNYESLEDAFLQYINNLKKNGILIINSDDN--NLLKIKRQISRKDINIFSFGSRDLS 254 Query: 257 DFQL 260 +FQ+ Sbjct: 255 NFQI 258 >gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae Eb661] gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae Eb661] Length = 438 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 41/264 (15%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 ++A I+AITGS GK+T +T + + K +IG+P L L P + Sbjct: 103 AQAPIVAITGSNGKST----VTTLVGDMAKAAGWQVGVGGNIGLPALMLLEQP--AQLYV 156 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTI 223 EL L T ++ A I + H+ + G+++ +AK ++ E Sbjct: 157 LELSSFQLET----TASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVY---ENAAVC 209 Query: 224 FLNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----L 276 +N DD+ L A+ + GI D+ L S +SW+ V+ + Sbjct: 210 VVNADDAMTFPVRGLDARCVSFGINA---------GDYHL---ATESGESWLNVKGDNLM 257 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + M +V G H N L L + + + +++KAL+ F G R++ AL++ Sbjct: 258 KTSDMTLV----GQHNQTNALAALALAEAVGLPLASSLKALTTF---SGLAHRFQIALDR 310 Query: 337 GFFTLIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 311 NGVRWINDSKATNVGSTEAALNGL 334 >gi|293366318|ref|ZP_06612998.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319556|gb|EFE59922.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 437 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 44/304 (14%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++ T +A+TG+ GKT+T +L+ ++ KKT IG +G+P + D+ F Sbjct: 99 NQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLP--------ESDYFAF 149 Query: 166 ELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 E E R FL++ P A++T I H F I+++ A + ++K G I Sbjct: 150 E-----ACEYRRHFLSY--HPDYAIMTNIDFDHPDYFKNIDDVYDAFQHMALNVKK-GII 201 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282 DD + L +Y +G + D + + + + +V ++G+ + Sbjct: 202 AWG-DDEYLRKLDVDI------PVYYYGFKETDDIYAKNIQITEKGTQFDVYIKGEFYDQ 254 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G H N L + I + +V+ +AL F + R + + NQ +I Sbjct: 255 FLSPQYGNHNILNALAVIAISYLENMNVENIKEALITFGGVKRRFNETKVS-NQ----VI 309 Query: 343 DESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + Y +P + A I V++ PH R A L + E LS++ + L Sbjct: 310 VDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAE--SLSKADQVFL 367 Query: 393 AEVL 396 E+ Sbjct: 368 CEIF 371 >gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella parvula ATCC 17745] gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella parvula ATCC 17745] Length = 456 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 32/211 (15%) Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 F + EL L I++ RP A++ I P HL+ +E +AK IFE T Sbjct: 159 FLVAELSSYQLETIKYF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD 214 Query: 222 TIFLNYDDSFFELL--KAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSW 271 + LN DD + +A SH L I Y+ G+ A + K+ E Sbjct: 215 YLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKFVIADEDI- 273 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 H G H +N+L + + L V+T + +S FH E R +R + Sbjct: 274 --------------HIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVK 319 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQ 362 F+ ++S N S+ A+ Q Sbjct: 320 TIDGITFY---NDSKATNVDSVVKALESFDQ 347 >gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter sp. HTCC2649] gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter sp. HTCC2649] Length = 502 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDF 162 L A + +TG+ GKTTT +MLT L + K G ++G P+ A M P D Sbjct: 135 LEGAAPWLTVTGTNGKTTTVQMLTSILRAAGKRAISAG----NVGTPILEAIMDPEPFDA 190 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 EL L + +RP +V +AP H+ E+ +AK +++ + Sbjct: 191 IAVELSSFQL----HWSDSIRPQASVCLNVAPDHVDWHGSYEDYLAAKGKVYNNTQV--A 244 Query: 223 IFLNYDDSFFELL 235 N DD E L Sbjct: 245 CIYNVDDPQTERL 257 >gi|307127726|ref|YP_003879757.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae 670-6B] gi|306484788|gb|ADM91657.1| UDP-N-acetylmuramate--alanine ligase [Streptococcus pneumoniae 670-6B] Length = 444 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 + + G+ GKT+T ML+ LS I T IG R + + +FE S Sbjct: 106 MGVAGAHGKTSTTGMLSHVLSHITDTSFLIGD---------GTGRGSANAKYFVFE---S 153 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 E F+ + P ++IT I H F+ +E+I +A + + + K +F+ +D+ Sbjct: 154 DEYERHFMPY--HPEYSIITNIDFDHPDYFTSLEDIFNAFNDYAKQITK--GLFVYGEDA 209 Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGI 288 EL K S A IY +G + + DF + S V +G+++ H Sbjct: 210 --ELRKITSDA----PIYYYGFEVEGNDFVASDLLRSITGSTFTVHFRGQNLGQFHIPTF 263 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N +G++ D++ + L F G +R+ + T+I + + Sbjct: 264 GRHNIMNATAVIGLLYTAGFDLNLVREHLKTF---AGVKRRFTEKIVND--TVIIDDFAH 318 Query: 349 NPASMKAAISVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 +P + A + Q PH R IA+L D L+Q+ + LA++ Sbjct: 319 HPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIALLDDFAHA--LNQADAVYLAQI 373 >gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa] Length = 448 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 31/260 (11%) Query: 106 SKATIIAITGSVGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 +KA I+AITGS K+T ++ +A+++ K+ + ++G P L + D++ + Sbjct: 107 AKAPIVAITGSNAKSTVTTLVGEMAVAADKRV-----AVGGNLGTP-ALDLLADDIELYV 160 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 EL L L +A + ++ H+ + G+ + AK IF G + + Sbjct: 161 LELSSFQLETCDRLN----AEVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQ---VV 213 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N D+ L A + +SFG +K DF+ + Q W+ Q GK + V Sbjct: 214 VNRADALTRPLIADT-----VPCWSFGLNK-PDFKAFGLIEEDGQKWLAFQF-GKLLPVG 266 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL---NQGFFT 340 I G H N L L + + D + AL F G +RC QG + Sbjct: 267 ELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFS-----GLAHRCQWVRERQG-VS 320 Query: 341 LIDESYNANPASMKAAISVL 360 D+S N + AAI L Sbjct: 321 YYDDSKATNVGAALAAIEGL 340 >gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 437 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AITG+ GKTT ML L KK +IG PL+ + + + L +S+ Sbjct: 107 AITGTNGKTTITTMLYEMLKYNKKAIVA-----GNIGWPLSELALKYEAEEKDVALELSN 161 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ + H P ++V+ +AP HL +E +K I++ K N DD+ Sbjct: 162 F-QLLGIEHFA-PSVSVVCNLAPDHLDYMPSVESYYESKMRIYKNCTKDDWFLRNVDDA 218 >gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 438 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 42/352 (11%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 ++A I+AITGS GK+T ++ + K G +IG+P A M +D +F Sbjct: 103 AQAPIVAITGSNGKSTVTTLVGEMAKAAGKNVGVGG----NIGLP---ALMLLDKGCELF 155 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 L +S ++ + L A I + H+ + G+++ +AK ++E + Sbjct: 156 VLELSSF-QLETTSSL-HAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAK---VCV 210 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD+ ++ + SFG + D+ L + + ++W+ V+ + K + V Sbjct: 211 VNADDALTMPVRGAD-----ERCISFGINM-GDYHLNRQQG---ETWLRVKGE-KVLNVK 260 Query: 285 HHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + G H N L L + + +++KAL+ F G R++ AL I+ Sbjct: 261 EMMLSGQHNYTNALAALALADAVGLPRSSSLKALTTF---TGLAHRFQLALEHNGVRWIN 317 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +S N S +AA++ L H +G +LG D + + N + Sbjct: 318 DSKATNVGSTEAALNGL-----HVDGTLYLLLG--------GDGKSADFSSLKQYLNGDN 36