RPSBLAST alignment of GI: 254781101 and protein with PDBid: 1e8c

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score =  229 bits (584), Expect = 1e-60
 Identities = 76/471 (16%), Positives = 158/471 (33%), Gaps = 37/471 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 4   NLRDLLAPW----VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 60  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIF 165
           TTT ++L      + +  A +G+  N +   +                    VD      
Sbjct: 120 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 180 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +               +  +       + +         E+ 
Sbjct: 240 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +      G  T++  
Sbjct: 300 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAP---GKPTVVV- 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----LYN 400
            Y   P +++ A+           G+   V G   +  +  +     +AE  +    + +
Sbjct: 356 DYAHTPDALEKALQAARLHCA---GKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTD 412

Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +        ++  +   +  + H    E              + DVV+V 
Sbjct: 413 DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 463