RPSBLAST alignment of GI: 254781101 and protein with PDBid: 1gg4
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452
Score = 264 bits (675), Expect = 3e-71
Identities = 133/470 (28%), Positives = 211/470 (44%), Gaps = 22/470 (4%)
Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
M + T L + G G ++ ++ D+R + P F A+KG +D HDF A
Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57
Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT
Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112
Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
+ KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI +
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172
Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232
Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
+ + + N+DF S + +Q S++V+ G H N L
Sbjct: 233 SRKVWRFSPN--AANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290
Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
+ + A +D L+ GR + L+D+SYNAN SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVL 347
Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
+++ G R+ V+GDM E+G S++ H+ + E I V G A+ A
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV 403
Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468
H L ++ + + V+ + K S S ++ L E
Sbjct: 404 GEHF---ADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450