RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] (472 letters) >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 Score = 264 bits (675), Expect = 3e-71 Identities = 133/470 (28%), Positives = 211/470 (44%), Gaps = 22/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWRFSPN--AANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468 H L ++ + + V+ + K S S ++ L E Sbjct: 404 GEHF---ADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450 >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 Score = 229 bits (584), Expect = 1e-60 Identities = 76/471 (16%), Positives = 158/471 (33%), Gaps = 37/471 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 4 NLRDLLAPW----VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 60 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIF 165 TTT ++L + + A +G+ N + + VD Sbjct: 120 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 180 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 240 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + G T++ Sbjct: 300 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAP---GKPTVVV- 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----LYN 400 Y P +++ A+ G+ V G + + + +AE + + + Sbjct: 356 DYAHTPDALEKALQAARLHCA---GKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTD 412 Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + ++ + + + H E + DVV+V Sbjct: 413 DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 463 >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* Length = 454 Score = 184 bits (468), Expect = 3e-47 Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 30/469 (6%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVED----------Y 226 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +L + + + + G + A N ++ + Sbjct: 227 LPIDKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A R ++ + YNANP +MK + S I Sbjct: 287 QEGVSEEQIRLAFQHLEL---TRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403 Query: 423 -------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L ++ SL D +++K SNS +L+ L Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESL 452 >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Length = 535 Score = 182 bits (461), Expect = 2e-46 Identities = 75/450 (16%), Positives = 141/450 (31%), Gaps = 36/450 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V G+++ ++ ++P + F A+ G G + A+ +GA V+ + VA I G ++PV Sbjct: 62 VTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPV 121 Query: 86 FGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 G L LA + T+I ITG+ GKTTT ++ L + + IG+ Sbjct: 122 LVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI 181 Query: 144 NNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +G + V+ + +S R + Sbjct: 182 GIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAF 241 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL + + AKA +F+ + A T+ + Sbjct: 242 TNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSA 301 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + Q + + G + G + N L+ L I+ + Sbjct: 302 ADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVS 361 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A+ L + R L Y P ++++ ++ L+ Sbjct: 362 PEQAVPGLREIRVPGRLEQIDRG-----QGFLALVDYAHKPEALRSVLTTLAHPDRR--- 413 Query: 370 RRIAVLGDMC--------EMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420 V G MG ++ DL V + +LA + Sbjct: 414 -LAVVFGAGGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 V + GDVV++ Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIA 501 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 Score = 134 bits (337), Expect = 6e-32 Identities = 71/424 (16%), Positives = 147/424 (34%), Gaps = 44/424 (10%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VVV++ + + + IPV +L A + IA+ G+ Sbjct: 76 EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQML---------AEIMRFRHGIAVAGT 126 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+++ + K + + A + + I E S + Sbjct: 127 HGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGKNAHLGAS-RYLIAEADESDASFLH 183 Query: 177 FLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +P ++V+T + P H+ + E++ + + L G + DD L Sbjct: 184 L-----QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMEL 238 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294 K + + ++G S+ AD+++ ++Q Q V V + G H A Sbjct: 239 VPKVG----RQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNAL 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + ++AL+ F R + + + + Y +P + Sbjct: 295 NATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVG 354 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWL 406 I + +RI ++ F +D +L +Y + Sbjct: 355 VTIKAAREGWG---DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI 411 Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G +L ++ + L + + DGD+++ + + S ++ L Sbjct: 412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS--VSKISRGL 469 Query: 465 LEEF 468 E + Sbjct: 470 AESW 473 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 Score = 100 bits (249), Expect = 9e-22 Identities = 69/467 (14%), Positives = 143/467 (30%), Gaps = 71/467 (15%) Query: 51 YDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 +G+ + +Q LVVV D++ + + L + ++ Sbjct: 69 EEGYL--IAHLQPAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFL--------SEQV 118 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS-----------------SIKKTYACIGSYNNHI 147 +IA+ G+ GK ML L + + ++++++ Sbjct: 119 LQSRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYL 178 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEE 205 G + V+ + + E + V RP A++ + H F+ ++ Sbjct: 179 GTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDA 238 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----------------IY 248 I + + + TG I + E AK I + Sbjct: 239 IQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLE 298 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307 + ++D+Q Q + ++ +V+ G H N L+ + + Sbjct: 299 NSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIG 358 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V TA ALS F + R + L+ + + +P ++ + + Sbjct: 359 VSVKTACAALSAFAGIKRR----MELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLA-- 412 Query: 368 EGRRIAVLGD---MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + R A++ +MG S D + W + A P Sbjct: 413 DRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE--WGLKEVIDNATIANP 470 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++D + I + GD +V+ S+ F + LL Sbjct: 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGG--FEGIHQRLLT 515 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 Score = 96.5 bits (239), Expect = 1e-20 Identities = 65/350 (18%), Positives = 124/350 (35%), Gaps = 34/350 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A L S++ +I ITGS GK M+ L N + + D D Sbjct: 106 AYLVSESQLIGITGSNGKXXXXXMIAEVL---NAGGQRGLLAGNIGFPASEVVQAANDKD 162 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 163 TLVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSD 218 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + LN++ + L + A TI F ++ D + KQ + + + + Sbjct: 219 FLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGV 274 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G H +N L T+ + + + LS F + R + + Sbjct: 275 ------PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHG---ISF 325 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++S + N + + A+S + ++ ++ + G D+ + Sbjct: 326 YNDSKSTNILATQKALSGF-------DNTKVILIAGGLDRGNEFDELIPDIT------GL 372 Query: 402 SHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 H+ + G +K A ++ + + + GDV+++ Sbjct: 373 KHMVVLGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLS 422 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 Score = 93.0 bits (230), Expect = 1e-19 Identities = 63/423 (14%), Positives = 131/423 (30%), Gaps = 41/423 (9%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV++ + + + IPV ++L L IAI G+ Sbjct: 77 RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLA---------ELMRFRHGIAIAGT 127 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M++ + + N + + + I E S + Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV---NGGLVKAAGVHARLGHGRYLIAEADESDASFLH 184 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +P +A++T I H+ + G E + L G + DD + Sbjct: 185 L-----QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPV---I 236 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +G +T + + + ++ + M V + G H A N Sbjct: 237 RELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-----TLIDESYNANP 350 + + + D + ++AL F R + ++ + Y +P Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCE----MGELSQSF-HIDLAEVLSLYNISHVW 405 + A I P + + + +D +L +Y Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAP 416 Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + G +L + I + + L D+++V+ + + ++ Sbjct: 417 IPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN--IGKIARS 474 Query: 464 LLE 466 L E Sbjct: 475 LAE 477 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 Score = 87.2 bits (215), Expect = 6e-18 Identities = 62/422 (14%), Positives = 129/422 (30%), Gaps = 45/422 (10%) Query: 63 KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 LV+ + + +P+ K R K A+TG+ Sbjct: 70 YDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLK-------REKKEEFAVTGT 122 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+ L ++K+ I L ++EL S Sbjct: 123 DGKTTTTAMVAHVLKHLRKSPTVF---LGGIMDSLEHGNYEKGNGPVVYELDESEEFFSE 179 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 F P+ +IT HL N+ + FE + + + + + + Sbjct: 180 F-----SPNYLIITNARGDHLENYGNSLTRYRSA---FEKISRNTDLVVTFAEDELTSHL 231 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K Y+ + + + + + + ++E++L G+H N Sbjct: 232 GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKL---------KVPGFHNVLNA 282 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + L D+ ++AL F R + + D Y P ++ Sbjct: 283 LAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD--YAHTPDEIRNL 340 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV 411 + ++ + + I + +F D V +Y+ +G Sbjct: 341 LQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISG 400 Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + D+L ++ E + L I S+ + V + + +E + + Sbjct: 401 KMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGD--IIYSSRRFVERYQS 456 Query: 471 IQ 472 + Sbjct: 457 SK 458 >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 Score = 84.8 bits (209), Expect = 4e-17 Identities = 73/422 (17%), Positives = 136/422 (32%), Gaps = 54/422 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPV 85 +D+R P + G A L+V +++ I + Sbjct: 34 MDTRMTPPGLDKLPEAVERHTGSLNDEW--LMAADLIVASPGIALAHPSLSAAADAGIEI 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 G ++ + A I+AITGS GK+T ++ + K Sbjct: 92 VGDIELFCREAQ----------APIVAITGSNGKSTVTTLV----GEMAKAAGVNVGVGG 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IG+P + + + + + EL L L + A I + H+ + Sbjct: 138 NIGLPALM-LLDDECELYVLELSSFQLETTSSL----QAVAATILNVTEDHMDRYPFG-- 190 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + +A E +N DD+ ++ + SFG + Sbjct: 191 LQQYRAAKLRIYENAKVCVVNADDALTMPIRGAD-----ERCVSFGVNMGDYH----LNH 241 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++W+ V+ + G H N L L + +++KAL+ F G Sbjct: 242 QQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTF---TG 298 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R+ L I++S N S +AA++ L + G+ Sbjct: 299 LPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTL----------HLLLGGDGK 348 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + LA L+ N+ ++ G L P +ETM+ + + GD Sbjct: 349 SADFSPLARYLNGDNV-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGD 405 Query: 446 VV 447 +V Sbjct: 406 MV 407 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 56.5 bits (136), Expect = 1e-08 Identities = 76/467 (16%), Positives = 134/467 (28%), Gaps = 184/467 (39%) Query: 80 SLSIPV--FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 L P F DD +L V++ + ++L + L+ Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK----------VGQFDQVLNLCLT 89 Query: 132 SIKKTYACIGSYNN--HIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + Y N H L A++ + D + + + + + I Sbjct: 90 EFENCYLE----GNDIH-----ALAAKLLQENDTTLVKTK-------ELIKNYITARIMA 133 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFELLKAKSHALGIK 245 S + A++ IF N DD F EL + Sbjct: 134 KRPFDKKSNSAL--FRAVGEGNAQLV-------AIFGGQGNTDDYFEEL----------R 174 Query: 246 TIYSFGKSKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVV---HH-----GIGYH 291 +Y D L + + + + ++ + + ++ + Y Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDY- 230 Query: 292 MAQNMLMT-------LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLI 342 L++ +G++ + V K L P E R + A +QG T + Sbjct: 231 -----LLSIPISCPLIGVIQLAHYVV--TAKLLGF-TPGELRS-YLKGATGHSQGLVTAV 281 Query: 343 -----D--ESYNANPASMKAAISVL------SQ-------ISPHGEGRRIAVLGDMCEMG 382 D ES+ + ++ AI+VL + P ++L D E Sbjct: 282 AIAETDSWESFFVS---VRKAITVLFFIGVRCYEAYPNTSLPP-------SILEDSLENN 331 Query: 383 E-----------LSQSF---HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 E L+Q +++ N SH LP V Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKT------N-SH--------------LPAGKQVE--- 367 Query: 429 TMDGLFLFIQSSLVDGD--VVV---VKSSNSCGFYRLINLLLEEFPA 470 I SLV+G +VV +S Y L NL L + A Sbjct: 368 --------I--SLVNGAKNLVVSGPPQS-----LYGL-NLTLRKAKA 398 Score = 56.1 bits (135), Expect = 2e-08 Identities = 68/372 (18%), Positives = 108/372 (29%), Gaps = 157/372 (42%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISI---DS--------------------RSIAPQEAF 43 L+ GHS QG V ++I DS R EA+ Sbjct: 263 LRSYLKGATGHS-----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC---YEAY 314 Query: 44 FAIKGPHYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK----- 97 P+ IL +++ G V + M+ SI +L+ V D + N Sbjct: 315 -----PNTSLPPSILEDSLENNEG---VPSPML-SISNLTQEQ--VQDYVNKTNSHLPAG 363 Query: 98 --LAVAARLRSKATIIAITGS----VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + ++ L + A + ++G G L + L K A G + I P Sbjct: 364 KQVEIS--LVNGAKNLVVSGPPQSLYG-------LNLTLRKAK---APSGLDQSRI--PF 409 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + R S+ RFL P + +P H S+ + A Sbjct: 410 S-ERKLK----------FSN----RFL-----P----VA--SPFH-SHL-----LVPASD 437 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQ----- 265 I + L K F + + I +Y + + D LR Sbjct: 438 LINKDLVKNNVSF-------------NAKDIQI-PVYD---TFDGSD--LRVLSGSISER 478 Query: 266 -----CSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI--VSILTADVDTAIKAL 317 W E Q K+ ++ G G G + +LT Sbjct: 479 IVDCIIRLPVKW-ETTTQFKATHILDFGPG-----------GASGLGVLTH--------- 517 Query: 318 SVFHPKEGRGKR 329 K+G G R Sbjct: 518 ---RNKDGTGVR 526 >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 Score = 50.8 bits (120), Expect = 7e-07 Identities = 48/343 (13%), Positives = 95/343 (27%), Gaps = 56/343 (16%) Query: 82 SIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 S P + L L + + I +TG+ GK + + L + T Sbjct: 12 SFPRLAKTGDHRRILTLL--HALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVG 69 Query: 139 CIGS-----YNNHIGV-------------------------------PLTLARMPVDVDF 162 S +N I + +T + + Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAY 129 Query: 163 GIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIF 214 F + +G T+++ P ++V+T +A H I IA KA I Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGII 189 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + N ++ AK G + + +L W Q Sbjct: 190 --KRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQ-- 245 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G+ ++ +G + +NM + + + + + ++ R Sbjct: 246 --DGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEK 303 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 ++ NP + I+ L Q+ +L D Sbjct: 304 ISDTPLIVI-DGAHNPDGINGLITALKQLFSQPITVIAGILAD 345 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Length = 326 Score = 49.7 bits (117), Expect = 1e-06 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 17/225 (7%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-----KTYACIGSYNNHIGVPLTLARMPV- 158 ++ + G+ GKTTT ML L ++ +P T + P Sbjct: 105 LHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNS 164 Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 F + E + V RP AV+ + H F+ + I + + Sbjct: 165 QSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G I N + K ++ + +Q + +V L Sbjct: 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT-----EHGWQAGEANADGS---FDVLL 276 Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 GK+ V +G H N L + + D+ TA +AL F Sbjct: 277 DGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAF 321 >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 Score = 43.7 bits (102), Expect = 9e-05 Identities = 54/327 (16%), Positives = 104/327 (31%), Gaps = 55/327 (16%) Query: 99 AVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHI--- 147 VA RL + I + G+ GK TT L L + S Y + Sbjct: 40 QVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQ 99 Query: 148 ---------------------GVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLT 179 + LT +F+ + LG T Sbjct: 100 GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 159 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++V +A IT+IA H E I KA +F G G + + + + Sbjct: 160 NIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRG----GKPAVVGEPDMPQSIADV 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + LG + K + + ++ +Q Q ++ + N Sbjct: 216 AAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAAT 275 Query: 299 -TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D AI+ GR + +++ ++D ++ NP + + + Sbjct: 276 ALAVLHYSELPLSDEAIRQGLQAASLPGRFQV----VSEQPLLILDVAH--NPHAARYLV 329 Query: 358 SVLSQI----SPHGEGRRIAVLGDMCE 380 + L+Q+ + +G+ AV+G + + Sbjct: 330 NRLAQVINPVNASKQGKVRAVVGMLSD 356 >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 Score = 36.9 bits (84), Expect = 0.011 Identities = 40/317 (12%), Positives = 83/317 (26%), Gaps = 60/317 (18%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGV------------ 149 + I I G+ GK + M++ L S S + I + Sbjct: 51 EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVK 110 Query: 150 ------------------PLTLARM----------PVDVDFGIFELGMSHLGEIRFLTHL 181 + + +VD + E+G+ G T++ Sbjct: 111 IYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGL---GGRLDATNV 167 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P + I T+ H E A G+ K + + L + A Sbjct: 168 VFPLCSTIVTVDRDHEKTLGYTIEQ---IAWEKSGIIKERVPLVTGERKREALKVMEDVA 224 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + DF ++ ++ + + ++V G H +N + L Sbjct: 225 RKKSSRMYVI---DKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALK 281 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + + K + NP ++ + L Sbjct: 282 TLEATGLPLSEKAIREGLKNAKNLGRFEILE----KNGKMYILDGAHNPHGAESLVRSLK 337 Query: 362 QISPHGEGRRIAVLGDM 378 V+G + Sbjct: 338 LYFNG--EPLSLVIGIL 352 >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 Score = 35.9 bits (81), Expect = 0.018 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%) Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 G++ V +L L+ + + G+ GK TT L L + S Sbjct: 30 LGLERVSLVAARLG---VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSS 83 >2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 445 Score = 35.8 bits (81), Expect = 0.020 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 16/160 (10%) Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L L + +++KAL+ F G R+ L I++S Sbjct: 265 SGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVRWINDSKA 321 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 N S +AA++ + G + L++ + + ++ Sbjct: 322 TNVGSTEAALNG--LHVDGTLHLLLGGDGKSADFSPLARYLNG---------DNVRLYCF 370 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 G L P +ETM+ + + GD+V Sbjct: 371 GRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMV 408 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 34.4 bits (78), Expect = 0.059 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 30/133 (22%) Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDD-----SF-FELLKAKSHALGIKTIYSFGKSKN 255 G+E I S KA I I YDD SF F +KA S+ L + G++ Sbjct: 1116 GVETILSGKARI--------CIVGGYDDFQEEGSFEFGNMKATSNTL---EEFEHGRTPA 1164 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAI 314 ++ + + +ME QG ++++ M ++ + +G+ + + A TA Sbjct: 1165 ---EMSRPATTTRNGFMEA--QGAGIQII-------MQADLALKMGVPIYGIVAMAATAT 1212 Query: 315 KALSVFHPKEGRG 327 + P G+G Sbjct: 1213 DKIGRSVPAPGKG 1225 Score = 27.9 bits (61), Expect = 5.3 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFE-LGMSHLGEIRFLTHLVRP 184 I L++I + C+ + G+ A+ +P+ + G F GM ++ T R Sbjct: 595 IMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRW 654 Query: 185 HI---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 H A T+ A + G + SA I EG+EK G + + F LL Sbjct: 655 HSESWANQLTVCGAIIGWTRGTG-LMSANNIIAEGIEKMGVRTFSQKEMAFNLL 707 >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Length = 403 Score = 32.1 bits (72), Expect = 0.28 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 9/53 (16%) Query: 92 LGALNKLAVAARLR------SKATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 + + + ++ +I + G V KT + L AL + Sbjct: 89 IQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQD 141 >3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* Length = 307 Score = 31.9 bits (72), Expect = 0.31 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Query: 106 SKATIIAIT--GSVGKTTTKEMLTIALSSIKKTYACIG 141 + A + A+ G +GK+TT L+ A S + K IG Sbjct: 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 >2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221 Score = 31.9 bits (71), Expect = 0.36 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 90 DVLGALNKLAVAAR---LRSKATIIAITGSV--GKTTTKEMLTIALSSIKKTYAC 139 D+L +LA R S + I G++ GKT E + + K A Sbjct: 9 DLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 >3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A Length = 312 Score = 31.6 bits (71), Expect = 0.40 Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F ++ GT+ +N E ++ +H +K + S K+ +F Sbjct: 36 FARVKADGTLNINPVRKRIESVRETAHKHNVKILISLAKNSPGEF 80 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10 Length = 341 Score = 31.4 bits (70), Expect = 0.41 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 5/73 (6%) Query: 89 DDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + L + +TG+ GK+T E + L A I Sbjct: 37 RHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI---AVD 93 Query: 147 IGVPLTLARMPVD 159 P+T + D Sbjct: 94 PSSPVTGGSILGD 106 >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Length = 257 Score = 31.4 bits (70), Expect = 0.45 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 104 LRSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140 LR+K IA+ G VGKTTT L L+ + K + Sbjct: 2 LRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} Length = 262 Score = 31.5 bits (70), Expect = 0.46 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 100 VAARLRSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140 + RL + IA+ G VGK+T +L + + K + Sbjct: 10 IKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Length = 267 Score = 31.2 bits (69), Expect = 0.52 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 105 RSKATIIAIT---GSVGKTTTKEMLTIALSSIKKT 136 K II I G VGK+T+ +L LS K Sbjct: 24 NKKPKIITIASIKGGVGKSTSAIILATLLSKNNKV 58 >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Length = 398 Score = 31.0 bits (69), Expect = 0.53 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 106 SKATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 S+A +I I+ G V KT + L A+ + Sbjct: 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPH 138 >2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, structural genomics consortium, SGC; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A Length = 144 Score = 31.0 bits (70), Expect = 0.66 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + GK VV HM +M+ G+V I V+ Sbjct: 107 IPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 142 >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 Score = 30.8 bits (68), Expect = 0.67 Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 I I G+ GKT+ M+ ++++ + S Sbjct: 63 SYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTS 98 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.72 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 7/32 (21%) Query: 94 ALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 AL KL + +L + A +AI K T + Sbjct: 21 ALKKLQASLKLYADDSAPALAI-----KATME 47 >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479 Score = 30.4 bits (69), Expect = 0.77 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 AV+ GA V++ TD +IP GA++ + + LR+ ++ T Sbjct: 596 AVRGGATHVIL-TDEAMGPARAAIPAILA---TGAVHTHLIRSNLRTFTSLNVRTAEG 649 >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290 Score = 30.3 bits (68), Expect = 1.1 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%) Query: 106 SKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI 140 K II++TGS G +T K I Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349 Score = 30.2 bits (67), Expect = 1.1 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 89 DDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI 140 VL + + + + A + ++G GK+T E L+ + + Sbjct: 55 QKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299 Score = 30.1 bits (67), Expect = 1.1 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Query: 102 ARLRSKATIIAITGS---VGKTTTKEMLTIALSSIKKTYACIG 141 A + ++ I+ ITG+ GKT L ++ + I Sbjct: 98 AMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* Length = 355 Score = 29.4 bits (65), Expect = 1.6 Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 6/109 (5%) Query: 98 LAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 L A + ITG VGK+T E L + L + + T Sbjct: 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL---IERGHRVAVLAVDPSSTRTGGS 125 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + D L + IR T L +G + Sbjct: 126 ILGDKTRMA-RLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFD 173 >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298 Score = 29.6 bits (65), Expect = 1.7 Identities = 31/267 (11%), Positives = 56/267 (20%), Gaps = 11/267 (4%) Query: 103 RLRSKATIIAIT-----GSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARM 156 L +K I I G VGK+ M + I + L Sbjct: 29 ILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFK 88 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 +E L + +V + L + + + E Sbjct: 89 VELPRVNFYEG----LKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLL 144 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + +YD + + S + S + + L Sbjct: 145 ATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDL 204 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 Q + + + I S L + VF R + Sbjct: 205 QEQFNPGLDMIGFVPYLVDTDSAT-IKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSKN 263 Query: 337 GFFTLIDESYNANPASMKAAISVLSQI 363 G +L +I Sbjct: 264 GITEHKGYDKKVLSMYKNVFFEMLERI 290 >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209 Score = 29.4 bits (65), Expect = 1.7 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 110 IIAIT---GSVGKTTTKEMLTIALSSIKKT 136 II + G VGKTTT L+ L+ +T Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQGET 31 >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Length = 318 Score = 29.0 bits (64), Expect = 2.1 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 14/107 (13%) Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 ++L I G +IAV+ E GE+S +D +++ L+ Sbjct: 19 TLLRHILNEQHGYKIAVI--ENEFGEVS----VD-DQLIGDRATQIKTLTN-------GC 64 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + S + + L + + D +V++ + +I Sbjct: 65 ICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTF 111 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 29.1 bits (64), Expect = 2.3 Identities = 7/23 (30%), Positives = 12/23 (52%) Query: 260 LRKWKQCSEQSWMEVQLQGKSME 282 +RKW++ + E+ K ME Sbjct: 87 IRKWREEQRKRLQELDAASKVME 109 >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Length = 271 Score = 28.6 bits (63), Expect = 3.1 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 6/92 (6%) Query: 102 ARLRSKATIIAITGS---VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 A S I IT GK+T L +A + + + P + Sbjct: 76 ANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD---GDMRKPTQHYIFNL 132 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + G+ L ++ + + V+T Sbjct: 133 PNNEGLSSLLLNWSTYQDSIISTEIEDLDVLT 164 >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245 Score = 28.5 bits (62), Expect = 3.5 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 107 KATIIAITGSV--GKTTTKEMLTIAL 130 + +I ++G GK+T E + L Sbjct: 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263 Score = 28.3 bits (62), Expect = 3.5 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%) Query: 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 I + G GKTT L +AL+ + Sbjct: 2 VRTITVASGKGGTGKTTITANLGVALAQLGH 32 >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Length = 289 Score = 28.3 bits (62), Expect = 3.6 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 18/239 (7%) Query: 110 IIAIT--GSVGKTTTKEMLTIALSSIKKTYACIG--SYNNHIGVPLTLARMPVDVDFGIF 165 AI G +GK+TT + L AL+ + K +G + + L ++ Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAE 63 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + L E+ + + + + P +G I + EG + F+ Sbjct: 64 AGTVEDL-ELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFV 122 Query: 226 NYD------DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 YD F + ++ A I + S + V+L G Sbjct: 123 FYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGL 182 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-------KALSVFHPKEGRGKRYR 331 + + + LG I D + + + PK + YR Sbjct: 183 ICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYR 241 >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* Length = 312 Score = 28.1 bits (62), Expect = 4.0 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 110 IIAITGSV--GKTTTKEMLTIALSS 132 II + GSV GK+TT +L L+ Sbjct: 92 IIGVAGSVAVGKSTTARVLQALLAR 116 >3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373 Score = 28.2 bits (62), Expect = 4.1 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 105 RSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140 K++++ T G VG +T IA +++ K + Sbjct: 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Score = 27.9 bits (61), Expect = 4.7 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 9/102 (8%) Query: 200 FSGIEEIASAKAEIFEGLEKT---------GTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 F IEE+ S + L+ +F+ Y + F + S Sbjct: 68 FVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQ 127 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + D Q++ + + L+ M + + YH+ Sbjct: 128 VATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHL 169 >2q01_A Uronate isomerase; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics; 2.34A {Caulobacter crescentus CB15} Length = 497 Score = 27.5 bits (61), Expect = 6.5 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%) Query: 358 SVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + LS + H RR+ A L M + +L L+ Sbjct: 421 AFLSIPARHDVARRVDSAFLARMVAEHRMDLVEAEELIVDLTYNL 465 >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237 Score = 27.6 bits (60), Expect = 6.7 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Query: 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 II+I G GKTT L++AL + Sbjct: 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGR 32 >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 Score = 27.3 bits (59), Expect = 6.8 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Query: 106 SKATIIAITG--SVGKTTTKEMLTIALSSI 133 SK II I+G + GKTT + L L + Sbjct: 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNC 48 >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589 Score = 27.5 bits (60), Expect = 6.9 Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 11/123 (8%) Query: 104 LRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARM 156 L++ + TG VGKT+ I L+ K + + + Sbjct: 4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQ 63 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + G+ L + + + I + S E+++ A Sbjct: 64 AIASVPGLSALEIDPQAAAQQYRARIVDPIKGV----LPDDVVSSINEQLSGACTTEIAA 119 Query: 217 LEK 219 ++ Sbjct: 120 FDE 122 >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Length = 269 Score = 27.2 bits (59), Expect = 7.4 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Query: 110 IIAIT--GSVGKTTTKEMLTIALSSIKK 135 +AI G +GK+TT + LT L ++ K Sbjct: 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGK 30 >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 Score = 27.3 bits (59), Expect = 7.5 Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%) Query: 110 IIAITGSV--GKTTTKEMLTIAL 130 +I ++G GK++ + L Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLL 46 >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} Length = 245 Score = 27.3 bits (59), Expect = 8.1 Identities = 5/29 (17%), Positives = 7/29 (24%), Gaps = 3/29 (10%) Query: 110 IIAIT---GSVGKTTTKEMLTIALSSIKK 135 + G G + ALS Sbjct: 6 VFGFVSAKGGDGGSCIAANFAFALSQEPD 34 >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (acoat), structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 Score = 26.9 bits (59), Expect = 9.3 Identities = 6/41 (14%), Positives = 18/41 (43%) Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 ++ NP + +A ++V+ +++ G + G+ Sbjct: 280 TFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQE 320 >1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8 Length = 463 Score = 26.8 bits (59), Expect = 9.9 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 358 SVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +LS S RR+ V+G+M E G++ +L + +S Sbjct: 412 KLLSFGSRTEMFRRVLSNVVGEMVEKGQIPIKEARELVKHVSYDG 456 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.401 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,054,682 Number of extensions: 188750 Number of successful extensions: 649 Number of sequences better than 10.0: 1 Number of HSP's gapped: 605 Number of HSP's successfully gapped: 68 Length of query: 472 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 376 Effective length of database: 3,365,806 Effective search space: 1265543056 Effective search space used: 1265543056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.7 bits)