RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781101|ref|YP_003065514.1|
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter
asiaticus str. psy62]
(472 letters)
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 264 bits (675), Expect = 3e-71
Identities = 133/470 (28%), Positives = 211/470 (44%), Gaps = 22/470 (4%)
Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
M + T L + G G ++ ++ D+R + P F A+KG +D HDF A
Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57
Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT
Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112
Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
+ KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI +
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172
Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232
Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
+ + + N+DF S + +Q S++V+ G H N L
Sbjct: 233 SRKVWRFSPN--AANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290
Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
+ + A +D L+ GR + L+D+SYNAN SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVL 347
Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
+++ G R+ V+GDM E+G S++ H+ + E I V G A+ A
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV 403
Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468
H L ++ + + V+ + K S S ++ L E
Sbjct: 404 GEHF---ADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Length = 498
Score = 229 bits (584), Expect = 1e-60
Identities = 76/471 (16%), Positives = 158/471 (33%), Gaps = 37/471 (7%)
Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
DLL + P + +++DSR A + F A+ G DG +I A+ +G
Sbjct: 4 NLRDLLAPW----VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59
Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119
++ A+ G + +PV + + L+ LA ++ +TG+ GK
Sbjct: 60 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119
Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIF 165
TTT ++L + + A +G+ N + + VD
Sbjct: 120 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179
Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
+ +S G ++ ++ +V T ++ HL +E +AK ++ I
Sbjct: 180 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 239
Query: 226 NYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
D+ L A+ + + + + + E+
Sbjct: 240 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299
Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
H +G N+L+ L + L + +K + P GR + + G T++
Sbjct: 300 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAP---GKPTVVV- 355
Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----LYN 400
Y P +++ A+ G+ V G + + + +AE + + +
Sbjct: 356 DYAHTPDALEKALQAARLHCA---GKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTD 412
Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
+ ++ + + + H E + DVV+V
Sbjct: 413 DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 463
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-
alanyl-D-alanine ligase, MURF protein...; HET: 1LG;
2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Length = 454
Score = 184 bits (468), Expect = 3e-47
Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 30/469 (6%)
Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
T H++ Q + + I I + DSR I + F +KG DGHDFI A + G
Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62
Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+
Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116
Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP
Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176
Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
A++T + AHL+ F EIA K +I +G+ + D +
Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVED----------Y 226
Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
I +L + + + + G + A N ++ +
Sbjct: 227 LPIDKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286
Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
+ A R ++ + YNANP +MK + S I
Sbjct: 287 QEGVSEEQIRLAFQHLEL---TRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343
Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
+ G++IAVL DM E+G+ S H + LS + V G + L +
Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403
Query: 423 -------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
+ + L ++ SL D +++K SNS +L+ L
Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESL 452
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis}
Length = 535
Score = 182 bits (461), Expect = 2e-46
Identities = 75/450 (16%), Positives = 141/450 (31%), Gaps = 36/450 (8%)
Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85
V G+++ ++ ++P + F A+ G G + A+ +GA V+ + VA I G ++PV
Sbjct: 62 VTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPV 121
Query: 86 FGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
G L LA + T+I ITG+ GKTTT ++ L + + IG+
Sbjct: 122 LVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI 181
Query: 144 NNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
+G + V+ + +S R +
Sbjct: 182 GIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAF 241
Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
T ++ HL + + AKA +F+ + A T+ +
Sbjct: 242 TNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSA 301
Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
+ + Q + + G + G + N L+ L I+ +
Sbjct: 302 ADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVS 361
Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
+ A+ L + R L Y P ++++ ++ L+
Sbjct: 362 PEQAVPGLREIRVPGRLEQIDRG-----QGFLALVDYAHKPEALRSVLTTLAHPDRR--- 413
Query: 370 RRIAVLGDMC--------EMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
V G MG ++ DL V + +LA +
Sbjct: 414 -LAVVFGAGGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471
Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
V + GDVV++
Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIA 501
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA
ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Length = 475
Score = 134 bits (337), Expect = 6e-32
Identities = 71/424 (16%), Positives = 147/424 (34%), Gaps = 44/424 (10%)
Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
+GA +VVV++ + + + IPV +L A + IA+ G+
Sbjct: 76 EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQML---------AEIMRFRHGIAVAGT 126
Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
GKTTT M+++ + K + + A + + I E S +
Sbjct: 127 HGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGKNAHLGAS-RYLIAEADESDASFLH 183
Query: 177 FLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
+P ++V+T + P H+ + E++ + + L G + DD L
Sbjct: 184 L-----QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMEL 238
Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294
K + + ++G S+ AD+++ ++Q Q V V + G H A
Sbjct: 239 VPKVG----RQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNAL 294
Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
N L + + ++AL+ F R + + + + Y +P +
Sbjct: 295 NATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVG 354
Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWL 406
I + +RI ++ F +D +L +Y +
Sbjct: 355 VTIKAAREGWG---DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI 411
Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
G +L ++ + L + + DGD+++ + + S ++ L
Sbjct: 412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS--VSKISRGL 469
Query: 465 LEEF 468
E +
Sbjct: 470 AESW 473
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Length = 524
Score = 100 bits (249), Expect = 9e-22
Identities = 69/467 (14%), Positives = 143/467 (30%), Gaps = 71/467 (15%)
Query: 51 YDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
+G+ + +Q LVVV D++ + + L + ++
Sbjct: 69 EEGYL--IAHLQPAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFL--------SEQV 118
Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS-----------------SIKKTYACIGSYNNHI 147
+IA+ G+ GK ML L + + ++++++
Sbjct: 119 LQSRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYL 178
Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEE 205
G + V+ + + E + V RP A++ + H F+ ++
Sbjct: 179 GTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDA 238
Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----------------IY 248
I + + + TG I + E AK I +
Sbjct: 239 IQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLE 298
Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307
+ ++D+Q Q + ++ +V+ G H N L+ + +
Sbjct: 299 NSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIG 358
Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
V TA ALS F + R + L+ + + +P ++ + +
Sbjct: 359 VSVKTACAALSAFAGIKRR----MELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLA-- 412
Query: 368 EGRRIAVLGD---MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
+ R A++ +MG S D + W + A P
Sbjct: 413 DRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE--WGLKEVIDNATIANP 470
Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
++D + I + GD +V+ S+ F + LL
Sbjct: 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGG--FEGIHQRLLT 515
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 96.5 bits (239), Expect = 1e-20
Identities = 65/350 (18%), Positives = 124/350 (35%), Gaps = 34/350 (9%)
Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
A L S++ +I ITGS GK M+ L N + + D D
Sbjct: 106 AYLVSESQLIGITGSNGKXXXXXMIAEVL---NAGGQRGLLAGNIGFPASEVVQAANDKD 162
Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
+ EL L ++ RPHIAVIT + P HL E+ +AK I + +
Sbjct: 163 TLVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSD 218
Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
+ LN++ + L + A TI F ++ D + KQ + + + +
Sbjct: 219 FLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGV 274
Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
G H +N L T+ + + + LS F + R + +
Sbjct: 275 ------PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHG---ISF 325
Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
++S + N + + A+S + ++ ++ + G D+ +
Sbjct: 326 YNDSKSTNILATQKALSGF-------DNTKVILIAGGLDRGNEFDELIPDIT------GL 372
Query: 402 SHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
H+ + G +K A ++ + + + GDV+++
Sbjct: 373 KHMVVLGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLS 422
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 93.0 bits (230), Expect = 1e-19
Identities = 63/423 (14%), Positives = 131/423 (30%), Gaps = 41/423 (9%)
Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
+ A +VVV++ + + + IPV ++L L IAI G+
Sbjct: 77 RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLA---------ELMRFRHGIAIAGT 127
Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
GKTTT M++ + + N + + + I E S +
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV---NGGLVKAAGVHARLGHGRYLIAEADESDASFLH 184
Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
+P +A++T I H+ + G E + L G + DD +
Sbjct: 185 L-----QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPV---I 236
Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
+ +G +T + + + ++ + M V + G H A N
Sbjct: 237 RELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296
Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-----TLIDESYNANP 350
+ + + D + ++AL F R + ++ + Y +P
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356
Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCE----MGELSQSF-HIDLAEVLSLYNISHVW 405
+ A I P + + + +D +L +Y
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAP 416
Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
+ G +L + I + + L D+++V+ + + ++
Sbjct: 417 IPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN--IGKIARS 474
Query: 464 LLE 466
L E
Sbjct: 475 LAE 477
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
TM0231, JCSG, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Length = 469
Score = 87.2 bits (215), Expect = 6e-18
Identities = 62/422 (14%), Positives = 129/422 (30%), Gaps = 45/422 (10%)
Query: 63 KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
LV+ + + +P+ K R K A+TG+
Sbjct: 70 YDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLK-------REKKEEFAVTGT 122
Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
GKTTT M+ L ++K+ I L ++EL S
Sbjct: 123 DGKTTTTAMVAHVLKHLRKSPTVF---LGGIMDSLEHGNYEKGNGPVVYELDESEEFFSE 179
Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
F P+ +IT HL N+ + FE + + + + + +
Sbjct: 180 F-----SPNYLIITNARGDHLENYGNSLTRYRSA---FEKISRNTDLVVTFAEDELTSHL 231
Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
K Y+ + + + + + + ++E++L G+H N
Sbjct: 232 GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKL---------KVPGFHNVLNA 282
Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
L + + L D+ ++AL F R + + D Y P ++
Sbjct: 283 LAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD--YAHTPDEIRNL 340
Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV 411
+ ++ + + I + +F D V +Y+ +G
Sbjct: 341 LQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISG 400
Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
+ D+L ++ E + L I S+ + V + + +E + +
Sbjct: 401 KMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGD--IIYSSRRFVERYQS 456
Query: 471 IQ 472
+
Sbjct: 457 SK 458
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A*
2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A*
3uag_A* 2uag_A*
Length = 439
Score = 84.8 bits (209), Expect = 4e-17
Identities = 73/422 (17%), Positives = 136/422 (32%), Gaps = 54/422 (12%)
Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPV 85
+D+R P + G A L+V +++ I +
Sbjct: 34 MDTRMTPPGLDKLPEAVERHTGSLNDEW--LMAADLIVASPGIALAHPSLSAAADAGIEI 91
Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
G ++ + A I+AITGS GK+T ++ + K
Sbjct: 92 VGDIELFCREAQ----------APIVAITGSNGKSTVTTLV----GEMAKAAGVNVGVGG 137
Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
+IG+P + + + + + EL L L + A I + H+ +
Sbjct: 138 NIGLPALM-LLDDECELYVLELSSFQLETTSSL----QAVAATILNVTEDHMDRYPFG-- 190
Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
+ +A E +N DD+ ++ + SFG +
Sbjct: 191 LQQYRAAKLRIYENAKVCVVNADDALTMPIRGAD-----ERCVSFGVNMGDYH----LNH 241
Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
++W+ V+ + G H N L L + +++KAL+ F G
Sbjct: 242 QQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTF---TG 298
Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
R+ L I++S N S +AA++ L + G+
Sbjct: 299 LPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTL----------HLLLGGDGK 348
Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
+ LA L+ N+ ++ G L P +ETM+ + + GD
Sbjct: 349 SADFSPLARYLNGDNV-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGD 405
Query: 446 VV 447
+V
Sbjct: 406 MV 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 56.5 bits (136), Expect = 1e-08
Identities = 76/467 (16%), Positives = 134/467 (28%), Gaps = 184/467 (39%)
Query: 80 SLSIPV--FGVDDVLGALNKLA------VAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
L P F DD +L V++ + ++L + L+
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK----------VGQFDQVLNLCLT 89
Query: 132 SIKKTYACIGSYNN--HIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
+ Y N H L A++ + D + + + + + I
Sbjct: 90 EFENCYLE----GNDIH-----ALAAKLLQENDTTLVKTK-------ELIKNYITARIMA 133
Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFELLKAKSHALGIK 245
S + A++ IF N DD F EL +
Sbjct: 134 KRPFDKKSNSAL--FRAVGEGNAQLV-------AIFGGQGNTDDYFEEL----------R 174
Query: 246 TIYSFGKSKNADF------QLRKWKQCSEQSWMEVQLQGKSMEVV---HH-----GIGYH 291
+Y D L + + + + ++ + + ++ + Y
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDY- 230
Query: 292 MAQNMLMT-------LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLI 342
L++ +G++ + V K L P E R + A +QG T +
Sbjct: 231 -----LLSIPISCPLIGVIQLAHYVV--TAKLLGF-TPGELRS-YLKGATGHSQGLVTAV 281
Query: 343 -----D--ESYNANPASMKAAISVL------SQ-------ISPHGEGRRIAVLGDMCEMG 382
D ES+ + ++ AI+VL + P ++L D E
Sbjct: 282 AIAETDSWESFFVS---VRKAITVLFFIGVRCYEAYPNTSLPP-------SILEDSLENN 331
Query: 383 E-----------LSQSF---HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
E L+Q +++ N SH LP V
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKT------N-SH--------------LPAGKQVE--- 367
Query: 429 TMDGLFLFIQSSLVDGD--VVV---VKSSNSCGFYRLINLLLEEFPA 470
I SLV+G +VV +S Y L NL L + A
Sbjct: 368 --------I--SLVNGAKNLVVSGPPQS-----LYGL-NLTLRKAKA 398
Score = 56.1 bits (135), Expect = 2e-08
Identities = 68/372 (18%), Positives = 108/372 (29%), Gaps = 157/372 (42%)
Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISI---DS--------------------RSIAPQEAF 43
L+ GHS QG V ++I DS R EA+
Sbjct: 263 LRSYLKGATGHS-----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC---YEAY 314
Query: 44 FAIKGPHYDGHDFILH-AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK----- 97
P+ IL +++ G V + M+ SI +L+ V D + N
Sbjct: 315 -----PNTSLPPSILEDSLENNEG---VPSPML-SISNLTQEQ--VQDYVNKTNSHLPAG 363
Query: 98 --LAVAARLRSKATIIAITGS----VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
+ ++ L + A + ++G G L + L K A G + I P
Sbjct: 364 KQVEIS--LVNGAKNLVVSGPPQSLYG-------LNLTLRKAK---APSGLDQSRI--PF 409
Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
+ R S+ RFL P + +P H S+ + A
Sbjct: 410 S-ERKLK----------FSN----RFL-----P----VA--SPFH-SHL-----LVPASD 437
Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQ----- 265
I + L K F + + I +Y + + D LR
Sbjct: 438 LINKDLVKNNVSF-------------NAKDIQI-PVYD---TFDGSD--LRVLSGSISER 478
Query: 266 -----CSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI--VSILTADVDTAIKAL 317
W E Q K+ ++ G G G + +LT
Sbjct: 479 IVDCIIRLPVKW-ETTTQFKATHILDFGPG-----------GASGLGVLTH--------- 517
Query: 318 SVFHPKEGRGKR 329
K+G G R
Sbjct: 518 ---RNKDGTGVR 526
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 50.8 bits (120), Expect = 7e-07
Identities = 48/343 (13%), Positives = 95/343 (27%), Gaps = 56/343 (16%)
Query: 82 SIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
S P + L L + + I +TG+ GK + + L + T
Sbjct: 12 SFPRLAKTGDHRRILTLL--HALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVG 69
Query: 139 CIGS-----YNNHIGV-------------------------------PLTLARMPVDVDF 162
S +N I + +T + +
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAY 129
Query: 163 GIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIF 214
F + +G T+++ P ++V+T +A H I IA KA I
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGII 189
Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
+ N ++ AK G + + +L W Q
Sbjct: 190 --KRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQ-- 245
Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
G+ ++ +G + +NM + + + + + ++ R
Sbjct: 246 --DGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEK 303
Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
++ NP + I+ L Q+ +L D
Sbjct: 304 ISDTPLIVI-DGAHNPDGINGLITALKQLFSQPITVIAGILAD 345
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
MESO-diaminopimelate ligase; structural genomics, PSI-2,
protein structure initiative; 2.55A {Neisseria
meningitidis MC58}
Length = 326
Score = 49.7 bits (117), Expect = 1e-06
Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 17/225 (7%)
Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-----KTYACIGSYNNHIGVPLTLARMPV- 158
++ + G+ GKTTT ML L ++ +P T + P
Sbjct: 105 LHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNS 164
Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
F + E + V RP AV+ + H F+ + I + +
Sbjct: 165 QSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224
Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
+ G I N + K ++ + +Q + +V L
Sbjct: 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT-----EHGWQAGEANADGS---FDVLL 276
Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
GK+ V +G H N L + + D+ TA +AL F
Sbjct: 277 DGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAF 321
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Length = 437
Score = 43.7 bits (102), Expect = 9e-05
Identities = 54/327 (16%), Positives = 104/327 (31%), Gaps = 55/327 (16%)
Query: 99 AVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHI--- 147
VA RL + I + G+ GK TT L L + S Y +
Sbjct: 40 QVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQ 99
Query: 148 ---------------------GVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLT 179
+ LT +F+ + LG T
Sbjct: 100 GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 159
Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
++V +A IT+IA H E I KA +F G G + + + +
Sbjct: 160 NIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRG----GKPAVVGEPDMPQSIADV 215
Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
+ LG + K + + ++ +Q Q ++ + N
Sbjct: 216 AAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAAT 275
Query: 299 -TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
+ D AI+ GR + +++ ++D ++ NP + + +
Sbjct: 276 ALAVLHYSELPLSDEAIRQGLQAASLPGRFQV----VSEQPLLILDVAH--NPHAARYLV 329
Query: 358 SVLSQI----SPHGEGRRIAVLGDMCE 380
+ L+Q+ + +G+ AV+G + +
Sbjct: 330 NRLAQVINPVNASKQGKVRAVVGMLSD 356
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166,
structural genomics, JCSG, PSI, protein structure
initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2
c.72.2.2
Length = 442
Score = 36.9 bits (84), Expect = 0.011
Identities = 40/317 (12%), Positives = 83/317 (26%), Gaps = 60/317 (18%)
Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGV------------ 149
+ I I G+ GK + M++ L S S + I +
Sbjct: 51 EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVK 110
Query: 150 ------------------PLTLARM----------PVDVDFGIFELGMSHLGEIRFLTHL 181
+ + +VD + E+G+ G T++
Sbjct: 111 IYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGL---GGRLDATNV 167
Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
V P + I T+ H E A G+ K + + L + A
Sbjct: 168 VFPLCSTIVTVDRDHEKTLGYTIEQ---IAWEKSGIIKERVPLVTGERKREALKVMEDVA 224
Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
+ + DF ++ ++ + + ++V G H +N + L
Sbjct: 225 RKKSSRMYVI---DKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALK 281
Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
+ + + + K + NP ++ + L
Sbjct: 282 TLEATGLPLSEKAIREGLKNAKNLGRFEILE----KNGKMYILDGAHNPHGAESLVRSLK 337
Query: 362 QISPHGEGRRIAVLGDM 378
V+G +
Sbjct: 338 LYFNG--EPLSLVIGIL 352
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 35.9 bits (81), Expect = 0.018
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
G++ V +L L+ + + G+ GK TT L L + S
Sbjct: 30 LGLERVSLVAARLG---VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSS 83
>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase;
nucleotide-binding, peptidoglycan synthesis, MURD
ligase, ATP-binding, cell division, UMA, ADP; HET: KCX
UMA ADP; 1.52A {Escherichia coli} SCOP: c.5.1.1 c.59.1.1
c.72.2.1 PDB: 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A*
2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 445
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
G H N L L + +++KAL+ F G R+ L I++S
Sbjct: 265 SGQHNYTNALAALALADAAGLPRASSLKALTTFT---GLPHRFEVVLEHNGVRWINDSKA 321
Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
N S +AA++ + G + L++ + + ++
Sbjct: 322 TNVGSTEAALNG--LHVDGTLHLLLGGDGKSADFSPLARYLNG---------DNVRLYCF 370
Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
G L P +ETM+ + + GD+V
Sbjct: 371 GRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGDMV 408
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.4 bits (78), Expect = 0.059
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDD-----SF-FELLKAKSHALGIKTIYSFGKSKN 255
G+E I S KA I I YDD SF F +KA S+ L + G++
Sbjct: 1116 GVETILSGKARI--------CIVGGYDDFQEEGSFEFGNMKATSNTL---EEFEHGRTPA 1164
Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI-VSILTADVDTAI 314
++ + + +ME QG ++++ M ++ + +G+ + + A TA
Sbjct: 1165 ---EMSRPATTTRNGFMEA--QGAGIQII-------MQADLALKMGVPIYGIVAMAATAT 1212
Query: 315 KALSVFHPKEGRG 327
+ P G+G
Sbjct: 1213 DKIGRSVPAPGKG 1225
Score = 27.9 bits (61), Expect = 5.3
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFE-LGMSHLGEIRFLTHLVRP 184
I L++I + C+ + G+ A+ +P+ + G F GM ++ T R
Sbjct: 595 IMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRW 654
Query: 185 HI---AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
H A T+ A + G + SA I EG+EK G + + F LL
Sbjct: 655 HSESWANQLTVCGAIIGWTRGTG-LMSANNIIAEGIEKMGVRTFSQKEMAFNLL 707
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 32.1 bits (72), Expect = 0.28
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 92 LGALNKLAVAARLR------SKATIIAIT---GSVGKTTTKEMLTIALSSIKK 135
+ + + ++ +I + G V KT + L AL +
Sbjct: 89 IQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQD 141
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 31.9 bits (72), Expect = 0.31
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 106 SKATIIAIT--GSVGKTTTKEMLTIALSSIKKTYACIG 141
+ A + A+ G +GK+TT L+ A S + K IG
Sbjct: 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase
maturation factor, metal binding protein; 2.30A
{Archaeoglobus fulgidus}
Length = 221
Score = 31.9 bits (71), Expect = 0.36
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 90 DVLGALNKLAVAAR---LRSKATIIAITGSV--GKTTTKEMLTIALSSIKKTYAC 139
D+L +LA R S + I G++ GKT E + + K A
Sbjct: 9 DLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, protein
structure initiative; 1.90A {Bacteroides
thetaiotaomicron} PDB: 3co4_A
Length = 312
Score = 31.6 bits (71), Expect = 0.40
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
F ++ GT+ +N E ++ +H +K + S K+ +F
Sbjct: 36 FARVKADGTLNINPVRKRIESVRETAHKHNVKILISLAKNSPGEF 80
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2,
protein structure initiative; 1.80A {Escherichia coli
K12} SCOP: c.37.1.10
Length = 341
Score = 31.4 bits (70), Expect = 0.41
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Query: 89 DDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
+ L + +TG+ GK+T E + L A I
Sbjct: 37 RHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI---AVD 93
Query: 147 IGVPLTLARMPVD 159
P+T + D
Sbjct: 94 PSSPVTGGSILGD 106
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 31.4 bits (70), Expect = 0.45
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 104 LRSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140
LR+K IA+ G VGKTTT L L+ + K +
Sbjct: 2 LRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304}
Length = 262
Score = 31.5 bits (70), Expect = 0.46
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 100 VAARLRSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140
+ RL + IA+ G VGK+T +L + + K +
Sbjct: 10 IKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide,
SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 31.2 bits (69), Expect = 0.52
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 105 RSKATIIAIT---GSVGKTTTKEMLTIALSSIKKT 136
K II I G VGK+T+ +L LS K
Sbjct: 24 NKKPKIITIASIKGGVGKSTSAIILATLLSKNNKV 58
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
binding protein; HET: ADP EPE; 2.05A {Escherichia coli}
PDB: 3ez6_A* 3ez7_A
Length = 398
Score = 31.0 bits (69), Expect = 0.53
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 106 SKATIIAIT---GSVGKTTTKEMLTIALSSIKK 135
S+A +I I+ G V KT + L A+ +
Sbjct: 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPH 138
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein
ubiquitination, structural genomics, structural genomics
consortium, SGC; 1.87A {Homo sapiens} SCOP: d.345.1.1
PDB: 2gwf_B 2ogb_A
Length = 144
Score = 31.0 bits (70), Expect = 0.66
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
+ GK VV HM +M+ G+V I V+
Sbjct: 107 IPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 142
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational
change, peptidoglycan synthesis, cell division, cobalt
binding; HET: ADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2vor_A*
Length = 487
Score = 30.8 bits (68), Expect = 0.67
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
I I G+ GKT+ M+ ++++ + S
Sbjct: 63 SYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTS 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.72
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 94 ALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
AL KL + +L + A +AI K T +
Sbjct: 21 ALKKLQASLKLYADDSAPALAI-----KATME 47
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 30.4 bits (69), Expect = 0.77
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
AV+ GA V++ TD +IP GA++ + + LR+ ++ T
Sbjct: 596 AVRGGATHVIL-TDEAMGPARAAIPAILA---TGAVHTHLIRSNLRTFTSLNVRTAEG 649
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.3 bits (68), Expect = 1.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 106 SKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI 140
K II++TGS G +T K I
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, transit peptide, disease mutation,
nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A
{Homo sapiens}
Length = 349
Score = 30.2 bits (67), Expect = 1.1
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 89 DDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI 140
VL + + + + A + ++G GK+T E L+ + +
Sbjct: 55 QKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 30.1 bits (67), Expect = 1.1
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 102 ARLRSKATIIAITGS---VGKTTTKEMLTIALSSIKKTYACIG 141
A + ++ I+ ITG+ GKT L ++ + I
Sbjct: 98 AMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A*
Length = 355
Score = 29.4 bits (65), Expect = 1.6
Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 98 LAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
L A + ITG VGK+T E L + L + + T
Sbjct: 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL---IERGHRVAVLAVDPSSTRTGGS 125
Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
+ D L + IR T L +G +
Sbjct: 126 ILGDKTRMA-RLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFD 173
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 29.6 bits (65), Expect = 1.7
Identities = 31/267 (11%), Positives = 56/267 (20%), Gaps = 11/267 (4%)
Query: 103 RLRSKATIIAIT-----GSVGKTTTKEMLTIALSSIKKTYACIG-SYNNHIGVPLTLARM 156
L +K I I G VGK+ M + I + L
Sbjct: 29 ILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFK 88
Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
+E L + +V + L + + + E
Sbjct: 89 VELPRVNFYEG----LKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLL 144
Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
+ +YD + + S + S + + L
Sbjct: 145 ATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDL 204
Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
Q + + + I S L + VF R +
Sbjct: 205 QEQFNPGLDMIGFVPYLVDTDSAT-IKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSKN 263
Query: 337 GFFTLIDESYNANPASMKAAISVLSQI 363
G +L +I
Sbjct: 264 GITEHKGYDKKVLSMYKNVFFEMLERI 290
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 29.4 bits (65), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 110 IIAIT---GSVGKTTTKEMLTIALSSIKKT 136
II + G VGKTTT L+ L+ +T
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQGET 31
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure 2 function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.0 bits (64), Expect = 2.1
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
++L I G +IAV+ E GE+S +D +++ L+
Sbjct: 19 TLLRHILNEQHGYKIAVI--ENEFGEVS----VD-DQLIGDRATQIKTLTN-------GC 64
Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
+ S + + L + + D +V++ + +I
Sbjct: 65 ICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTF 111
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.1 bits (64), Expect = 2.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 260 LRKWKQCSEQSWMEVQLQGKSME 282
+RKW++ + E+ K ME
Sbjct: 87 IRKWREEQRKRLQELDAASKVME 109
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 28.6 bits (63), Expect = 3.1
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 102 ARLRSKATIIAITGS---VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
A S I IT GK+T L +A + + + P +
Sbjct: 76 ANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD---GDMRKPTQHYIFNL 132
Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
+ G+ L ++ + + V+T
Sbjct: 133 PNNEGLSSLLLNWSTYQDSIISTEIEDLDVLT 164
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.5 bits (62), Expect = 3.5
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 107 KATIIAITGSV--GKTTTKEMLTIAL 130
+ +I ++G GK+T E + L
Sbjct: 24 RPFLIGVSGGTASGKSTVCEKIMELL 49
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 28.3 bits (62), Expect = 3.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKK 135
I + G GKTT L +AL+ +
Sbjct: 2 VRTITVASGKGGTGKTTITANLGVALAQLGH 32
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 28.3 bits (62), Expect = 3.6
Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 18/239 (7%)
Query: 110 IIAIT--GSVGKTTTKEMLTIALSSIKKTYACIG--SYNNHIGVPLTLARMPVDVDFGIF 165
AI G +GK+TT + L AL+ + K +G + + L ++
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAE 63
Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
+ L E+ + + + + P +G I + EG + F+
Sbjct: 64 AGTVEDL-ELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFV 122
Query: 226 NYD------DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
YD F + ++ A I + S + V+L G
Sbjct: 123 FYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGL 182
Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI-------KALSVFHPKEGRGKRYR 331
+ + + LG I D + + + PK + YR
Sbjct: 183 ICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYR 241
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Length = 312
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 110 IIAITGSV--GKTTTKEMLTIALSS 132
II + GSV GK+TT +L L+
Sbjct: 92 IIGVAGSVAVGKSTTARVLQALLAR 116
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 28.2 bits (62), Expect = 4.1
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 105 RSKATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI 140
K++++ T G VG +T IA +++ K +
Sbjct: 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
polymorphism, metal-binding, phosphoprotein, exchange
factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 27.9 bits (61), Expect = 4.7
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 200 FSGIEEIASAKAEIFEGLEKT---------GTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
F IEE+ S + L+ +F+ Y + F + S
Sbjct: 68 FVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQ 127
Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
+ D Q++ + + L+ M + + YH+
Sbjct: 128 VATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHL 169
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative, PSI, NEW YORK SGX research center for
structural genomics; 2.34A {Caulobacter crescentus CB15}
Length = 497
Score = 27.5 bits (61), Expect = 6.5
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 358 SVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYN 400
+ LS + H RR+ A L M + +L L+
Sbjct: 421 AFLSIPARHDVARRVDSAFLARMVAEHRMDLVEAEELIVDLTYNL 465
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 27.6 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKK 135
II+I G GKTT L++AL +
Sbjct: 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGR 32
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.3 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 106 SKATIIAITG--SVGKTTTKEMLTIALSSI 133
SK II I+G + GKTT + L L +
Sbjct: 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNC 48
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydrolase; HET: ADP; 2.15A
{Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB:
1f48_A* 1ii0_A* 1ii9_A*
Length = 589
Score = 27.5 bits (60), Expect = 6.9
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 104 LRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARM 156
L++ + TG VGKT+ I L+ K + + +
Sbjct: 4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQ 63
Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
+ G+ L + + + I + S E+++ A
Sbjct: 64 AIASVPGLSALEIDPQAAAQQYRARIVDPIKGV----LPDDVVSSINEQLSGACTTEIAA 119
Query: 217 LEK 219
++
Sbjct: 120 FDE 122
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 27.2 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 110 IIAIT--GSVGKTTTKEMLTIALSSIKK 135
+AI G +GK+TT + LT L ++ K
Sbjct: 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGK 30
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 27.3 bits (59), Expect = 7.5
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 110 IIAITGSV--GKTTTKEMLTIAL 130
+I ++G GK++ + L
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLL 46
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, protein structure initiative; HET: ATP;
2.20A {Chlorobium tepidum tls}
Length = 245
Score = 27.3 bits (59), Expect = 8.1
Identities = 5/29 (17%), Positives = 7/29 (24%), Gaps = 3/29 (10%)
Query: 110 IIAIT---GSVGKTTTKEMLTIALSSIKK 135
+ G G + ALS
Sbjct: 6 VFGFVSAKGGDGGSCIAANFAFALSQEPD 34
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (acoat), structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 26.9 bits (59), Expect = 9.3
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
++ NP + +A ++V+ +++ G + G+
Sbjct: 280 TFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQE 320
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Length = 463
Score = 26.8 bits (59), Expect = 9.9
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 358 SVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYN 400
+LS S RR+ V+G+M E G++ +L + +S
Sbjct: 412 KLLSFGSRTEMFRRVLSNVVGEMVEKGQIPIKEARELVKHVSYDG 456
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,054,682
Number of extensions: 188750
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 68
Length of query: 472
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 376
Effective length of database: 3,365,806
Effective search space: 1265543056
Effective search space used: 1265543056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)