BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] (472 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/472 (100%), Positives = 472/472 (100%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA Sbjct: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT Sbjct: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 Query: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 Query: 361 SQISPHGEGRRIAVLG 376 I GR I V G Sbjct: 374 KNIRTITSGRIIVVFG 389 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 39/367 (10%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158 +A +R + +I +++G+ GKTTT ++ L K I G N G T AR+ Sbjct: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 ++ + E S IR + +V V+T I P HL + I +A + + + Sbjct: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G + D L A+ + + I ++G+ AD + ++ S +S +V +QG Sbjct: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266 Query: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 K + V+ IG H N ++ + L + K L+ F G +R+ Sbjct: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388 + D+ Y +P + + ++ + QI P R+I + LS F Sbjct: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP----RKIIAIHQPHRYSRLSTLFDQF 378 Query: 389 -----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441 D+ + +Y+ + GF L + H +Y ++ D L I + Sbjct: 379 SSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA 438 Query: 442 VDGDVVV 448 GD ++ Sbjct: 439 EPGDFII 445 Score = 23.5 bits (49), Expect = 8.9, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 I LS+P+ G ++ A +AVA +L + K+ L + S IK+ + Sbjct: 275 IKDLSLPLIGEHNISNACASIAVAYKL-----------GLSSEDVKKGLA-SFSGIKRRF 322 Query: 138 ACIGSYNN 145 +G +N+ Sbjct: 323 TLVGVWND 330 >gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRY 330 Q++G M+ Y + M LG +++ D T AI LSVF+ E G+ Sbjct: 297 QMRGAIMD-------YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 C G+ + E A K I +L ++S + EGR I LGD Sbjct: 350 PCREGTGWMMRVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGD 395 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +++G + R S ++ IA+TG+ GK++T +++ L K Y +IG Sbjct: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLR--KNGYDV--QLGGNIG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +P+ F + E + LT + P I V+ I+P HL +E + Sbjct: 150 LPILNLEYFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVN 205 Query: 209 AKAEI 213 K +I Sbjct: 206 IKKKI 210 >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 27.7 bits (60), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 19/134 (14%) Query: 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARMPV 158 K+ II I G VGKTTT L+ AL++I + I G+ + +G+ L Sbjct: 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL------Y 58 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D + ++L + + L P++++I P+ + + GIE I + + L+ Sbjct: 59 DRKYSSYDLLIEEKNINQILIQTAIPNLSII----PSTM-DLLGIEMILGGEKDRLFRLD 113 Query: 219 KTGTIFLNYDDSFF 232 K ++ L D S+ Sbjct: 114 KALSVQLTSDFSYI 127 >gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQ 265 +LN+ ++F +L+ K H + ++ G F Q WK+ Sbjct: 95 YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + +I AK++++ L G+I L +D+SF G T +SFG Sbjct: 288 SVAKIGIAKSDLYPSLSLNGSIALTHDNSF----------PGYNTHWSFG 327 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,146 Number of Sequences: 1233 Number of extensions: 12439 Number of successful extensions: 39 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 11 length of query: 472 length of database: 328,796 effective HSP length: 77 effective length of query: 395 effective length of database: 233,855 effective search space: 92372725 effective search space used: 92372725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)