HHsearch alignment for GI: 254781102 and conserved domain: COG0770
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=517.99 Aligned_cols=402 Identities=25% Similarity=0.370 Sum_probs=326.0
Q ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 43002453023146898899803887676888999998598899984732233343223479709997998999999999
Q gi|254781102|r 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 (497)
Q Consensus 28 ~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~ 107 (497)
T Consensus 22 ~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~-----~~~~V~d~~~al~~la~ 95 (451)
T COG0770 22 VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-L-----VVLLVLDTLEALGKLAK 95 (451)
T ss_pred CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-C-----CEEEEHHHHHHHHHHHH
T ss_conf 00106995246678885238716763564221889984597799992576786656-5-----25875999999999999
Q ss_pred HHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98276200224565430652000123333321023222223454433235544576753122111111101122333335
Q gi|254781102|r 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 (497)
Q Consensus 108 ~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vl 187 (497)
T Consensus 96 ~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~---gn~Nn~i---Gl----Pltll~~-----~~~~e~~Vl 160 (451)
T COG0770 96 AYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATP---GNFNNEI---GL----PLTLLRL-----PADTEYAVL 160 (451)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCC---CCCCCCC---CC----HHHHHHC-----CCCCCEEEE
T ss_conf 9997369968999589970769999999986368074678---7668654---41----5689747-----776647999
Q ss_pred CCCHHHH-HHHHH----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 6676665-55431----043212111232154554321101122345542100000012232111254200012221023
Q gi|254781102|r 188 EASSHGL-DQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 (497)
Q Consensus 188 EvSS~gl-~~~rl----~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~ 262 (497)
T Consensus 161 EmG---~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~-~~~g~ai~n~d~~~~~~~~~~~~- 235 (451)
T COG0770 161 EMG---MNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGL-RPEGIAILNADNPLLKNWAAKIG- 235 (451)
T ss_pred ECC---CCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHCC-
T ss_conf 868---9977747888440589889983805999874288999999999998156-87867998786177787776357-
Q ss_pred CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56532222233-33220000001454443211222100101223433222110577888775202676763111234433
Q gi|254781102|r 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 263 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
T Consensus 236 -~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~ 314 (451)
T COG0770 236 -NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKP 314 (451)
T ss_pred -CCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf -8757997688777525677898388507999806833799945784768999999999999819999999999986378
Q ss_pred HHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCHHHHHHHHHHHH-CCEEEEC
Q ss_conf 45521000135578602300-0378689999741211002344403540266546---00468999999861-9899990
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDL-ADIAIVT 416 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd---~~kr~~mg~~a~~~-ad~vi~t 416 (497)
T Consensus 315 ~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~ 393 (451)
T COG0770 315 VKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLV 393 (451)
T ss_pred CCCCCEEEE-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 886633676-4898189973788998999999999963766885799477666385489999999999985695099997
Q ss_pred CCCCCCCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8879898989999999834798-0997898999999999658988999944
Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~~-~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
T Consensus 394 G~-----~~~~----i~~~~~~~~~~f~~~~~l~~~l~~~l~~gd~vLvKg 435 (451)
T COG0770 394 GE-----LSKA----IAEALGNKGIYFADKEELITSLKALLRKGDVVLVKG 435 (451)
T ss_pred CC-----CHHH----HHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 62-----0699----998657775860777999999998567787899973