HHsearch alignment for GI: 254781102 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=370.76 Aligned_cols=312 Identities=27% Similarity=0.367 Sum_probs=231.4
Q ss_pred HHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 82762002245654306520001233333210232222234544332355445767531221111111011223333356
Q gi|254781102|r 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 (497)
Q Consensus 109 ~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlE 188 (497)
T Consensus 104 ~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~------------p-~l~~~~-----~~~~~d~~VlE 165 (448)
T COG0771 104 YRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT------------P-ALELLE-----QAEPADVYVLE 165 (448)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCC------------C-HHHHHC-----CCCCCCEEEEE
T ss_conf 87448999899979996288999999999855998321351671------------3-787620-----15789879999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 67666555431043212111232154554321101122345542100000012232111254200012221023565322
Q gi|254781102|r 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 (497)
Q Consensus 189 vSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~ 268 (497)
T Consensus 166 lSSfQL~~--~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~---~~Vin~dd~~~~~~~~~~~~~~~~~f 240 (448)
T COG0771 166 LSSFQLET--TSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE---VAVINADDAYLKTLADEATKARVIWF 240 (448)
T ss_pred CCCCCCCC--CCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHCCCCEEEEE
T ss_conf 24555165--76678557999448877865606999999999999838962---79983772777654430366326889
Q ss_pred CCCCCCC-CCCCCEECCCCCCCCCCCCCCCCEE--ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2223333-2200000014544432112221001--012234332221105778887752026767631112344334552
Q gi|254781102|r 269 SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 269 ~~g~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
T Consensus 241 s~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR 311 (448)
T COG0771 241 SFGEPLADGDYIYDGKL------V---FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHR 311 (448)
T ss_pred ECCCCCCCCCEEECCHH------C---CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 74664556633434011------0---35300033421587545249989999999998399989999999738999862
Q ss_pred HCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 1000135578602300-037868999974121100234440354026654600468999999861989999088798989
Q gi|254781102|r 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 (497)
Q Consensus 346 ~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~ 424 (497)
T Consensus 312 ~e~v~~~-~gv~f~NDSKATN~~At~~AL~~~~----~~v~lI~G-G~~Kg~df~-~L~~~~~~~~~~~~~-----~G~~ 379 (448)
T COG0771 312 LEFVGEK-DGVLFINDSKATNVDATLAALSGFD----GPVILIAG-GDDKGADFS-PLAEILAKVIKKLVL-----IGED 379 (448)
T ss_pred EEEEEEC-CCEEEECCCCCCCHHHHHHHHHCCC----CCEEEEEC-CCCCCCCHH-HHHHHHHHCCEEEEE-----ECCC
T ss_conf 2798861-9889960787888889999997189----97799977-778888816-889977415559999-----4788
Q ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999999983479809978989999999996589889999
Q gi|254781102|r 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 425 ~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
T Consensus 380 ~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a~~gd~VLL 419 (448)
T COG0771 380 AEKIAAALKEAGPSLVICETLEEAVQLARELAQPGDVVLL 419 (448)
T ss_pred HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999875278536147699999999987258986997