HHsearch alignment for GI: 254781102 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=100.00 E-value=0 Score=963.88 Aligned_cols=469 Identities=40% Similarity=0.600 Sum_probs=431.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 97678786678988732033556555743002453023146898899803887676888999998598899984732233
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~ 80 (497)
T Consensus 3 ~~l~~ll~~~--------~~--~~~~d~~i~gis~DSR~v~~g~lFval~G~~~DGh~fi~~Ai~~GA~avv~~~~~~-- 70 (481)
T PRK00139 3 MKLRDLLAPL--------KA--DHVLDVEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEPDVE-- 70 (481)
T ss_pred CCHHHHHHHC--------CC--CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC--
T ss_conf 4689986236--------65--67888777799963771899978999166778989999999986997999847767--
Q ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC-CCCC
Q ss_conf 34322347970999799899999999998276200--22456543065200012333332102322222345443-3235
Q gi|254781102|r 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFA 157 (497)
Q Consensus 81 ~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~-~~~~ 157 (497)
T Consensus 71 -------~~~~~i~V~d~~~al~~la~~~y~~~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~ 143 (481)
T PRK00139 71 -------AAVPVIVVPDLRRALALLAAAFYGNPSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTL 143 (481)
T ss_pred -------CCCCEEEECCHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEE
T ss_conf -------8985999899999999999998708043180899958998434999999999874986314302211418730
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 54457675312211111110112233333566766655543104321211123215455432110112234554210000
Q gi|254781102|r 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 (497)
Q Consensus 158 ~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~ 237 (497)
T Consensus 144 ~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSShgl~q~Rv~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~ 223 (481)
T PRK00139 144 IPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSSHALDQGRVDGLTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAEL 223 (481)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 36678988768899999999987997799984303555221348875689996576778534378999999999997465
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 001223211125420001222102356532222233--332200000014544432112221001012234332221105
Q gi|254781102|r 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 (497)
Q Consensus 238 ~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~Na 315 (497)
T Consensus 224 --~~~~aViN~DD~~~~~~~~~~~---~~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hNv~Na 298 (481)
T PRK00139 224 --GLKAAVINADDEVGARLLAALP---ATVVTYSIEDHGADLRATDIEFSAQGVSFTLVTPWGEGEVESPLIGRFNVSNL 298 (481)
T ss_pred --CCCCEEEECCCHHHHHHHHHCC---CCCCEECCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf --7882499468889999999717---88525404788860899999984896199999589379999678878889879
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 77888775202676763111234433455210001355786023000378689999741211002344403540266546
Q gi|254781102|r 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 (497)
Q Consensus 316 laAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd 395 (497)
T Consensus 299 laAiava~~lGi~~~~i~~~L~~~~~v~GRmE~i~~-~~~~~vivDYAHtP~sl~~~L~~lr~~~~~rli~VfG~gG~Rd 377 (481)
T PRK00139 299 LAAIAALLALGVPLEDILKALAKLRPVPGRMERVGA-GGGPLVIVDYAHTPDALEKVLDALRPHAKGRLICVFGCGGDRD 377 (481)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEC-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999999998398989999998349999998689987-9996899976899899999999998764898699989867777
Q ss_pred CCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCE
Q ss_conf 004689999998619899990887989898999999983479--809978989999999996589889999446886635
Q gi|254781102|r 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 (497)
Q Consensus 396 ~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~--~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~ 473 (497)
T Consensus 378 ~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i~~g~~~~~~~~i~dR~~AI~~ai~~a~~~d~vliaGKGhE~~q 457 (481)
T PRK00139 378 KGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGITHANAVVIEDRAEAIKYAIALAKPGDVVLIAGKGHEDYQ 457 (481)
T ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCE
T ss_conf 01418999999971998999399989989999999998269879928978999999999985599999999735876668
Q ss_pred EECCCEECCCCHHHHHHHHHHH
Q ss_conf 8449788679989999998443
Q gi|254781102|r 474 IVTNGEKKMSVDCDIIREILGL 495 (497)
Q Consensus 474 ~~~~~~~~~~~d~~~~~~~l~~ 495 (497)
T Consensus 458 ~~~-~~~~~f~D~~~~~~~l~~ 478 (481)
T PRK00139 458 IIG-GVKIPFDDREVAREALAE 478 (481)
T ss_pred EEC-CEEECCCHHHHHHHHHHH
T ss_conf 989-998668879999999985