HHsearch alignment for GI: 254781102 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=376.23 Aligned_cols=307 Identities=23% Similarity=0.306 Sum_probs=220.2
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 00224565430652000123333321023222223454433235544576753122111111101122333335667666
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~g 193 (497)
T Consensus 113 ~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNIG~------------p~-l~l------~~~~~~~~~VlElSSfQ 173 (457)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGNIGT------------AI-LSL------EPPKAGRVYVVECSSYQ 173 (457)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCH------------HH-CCC------CCCCCCCEEEEEECCCH
T ss_conf 898899928996498999999999973998699666240------------11-123------46889966999925752
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55543104321211123215455432110112234554210000001223211125420001222102356532222233
Q gi|254781102|r 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 194 l~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
T Consensus 174 l~~--~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~----~~~~Vin~DD~~~~~l~~~~~~~~~~~~~~s~~ 247 (457)
T PRK01390 174 IDL--TPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAG----AGTAVIGVDDAYCQAIADRLERAGKRVVRISVE 247 (457)
T ss_pred HHH--HHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 654--40069988999178877865508999999999998557----986999688888999999987638849997167
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCEE---EC--CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 332200000014544432112221001---01--2234332221105778887752026767631112344334552100
Q gi|254781102|r 274 GKFIHLKKVCAIHNKQQVTISVEGKDF---DF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
T Consensus 248 ~~~~~--g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~ 323 (457)
T PRK01390 248 KPLAR--GIYA-DGGKLV-RATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQ 323 (457)
T ss_pred CCCCC--CEEE-ECCEEE-ECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 65668--6498-578899-8479834544314323457754269999999999998189899999999748999985279
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
T Consensus 324 V~~~-~Gv~~iNDSKaTN~~at~~Al~s~~-----~i~lI~G-G~~K~~d~~~l-~~~~~~-v~~~~li-----G~~~~~ 389 (457)
T PRK01390 324 VGRR-GKVLFVNDSKATNADAAAPALSSFP-----NIYWIAG-GKPKAGGIESL-APFFPR-IAKAYLI-----GEAAEE 389 (457)
T ss_pred EEEC-CCCEEECCCCCCCHHHHHHHHHCCC-----CEEEEEC-CCCCCCCHHHH-HHHHHC-CCEEEEE-----CCCHHH
T ss_conf 7542-7833853776789899999997378-----8599945-04788897999-998743-3599998-----988899
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHC----CCCCEEEE
Q ss_conf 99999834798099789899999999965----89889999
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVV 464 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a----~~gDvili 464 (497)
T Consensus 390 ~~~~l~~~-~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLl 429 (457)
T PRK01390 390 FAATLGGA-VPYEISGTLEAAVAAAARDAAASGAPEPVVLL 429 (457)
T ss_pred HHHHHHCC-CCEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99987367-98798598999999999999851899998997