HHsearch alignment for GI: 254781102 and conserved domain: PRK01710
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=374.30 Aligned_cols=316 Identities=20% Similarity=0.278 Sum_probs=227.2
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
T Consensus 114 ~~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGNiG~------------p~-~---~~~~~--~~~~d~~V~E~SS 175 (458)
T PRK01710 114 YCPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGT------------PL-F---SNIEE--IKEEDKVVLELSS 175 (458)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC------------HH-H---HHHHH--CCCCCEEEEEECH
T ss_conf 37587799936898478999999999984997585166264------------46-8---88850--5788669999321
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 66555431043212111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
T Consensus 176 ~ql~~~---~~~P~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~-~~~~~~~i~n~Dd~~~~~~~~~~---~~~~~~f~ 248 (458)
T PRK01710 176 FQLMTM---DVSPEVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKY-QSSNDLLVLNKDNEITNGMEKEA---KGDVVKFS 248 (458)
T ss_pred HHHHHC---CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHC---CCCEEEEC
T ss_conf 555305---468878998358853650654199999999999963-88773799937869999987763---68789953
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3333220000001454443211222100-1-0122343322211057788877520267676311123443345521000
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
T Consensus 249 ~~~~~~~~~~~--~~--~~~--~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~hR~E~v 321 (458)
T PRK01710 249 RKEKLKEGAYY--KD--GKL--YIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVEHRCEFV 321 (458)
T ss_pred CCCCCCCCCEE--EC--CEE--EECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHEEE
T ss_conf 66545667367--66--889--98784011324216776544999999999998-1999999999987543534231465
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
T Consensus 322 ~~~-~gv~~iNDSkaTn~~s~~~AL~~~----~~~iilI~G-G~~K~~d~~~l-~~~~~~~~k~vi~~-----G~~~~~i 389 (458)
T PRK01710 322 REI-NGVKYYNDSIASSPTRTLAGLNAF----EKPVILIAG-GYDKKIPFEPL-AEEGYEKIKILILM-----GDTKNKI 389 (458)
T ss_pred EEE-CCEEEEECCCCCCHHHHHHHHHCC----CCCEEEEEC-CCCCCCCHHHH-HHHHHHHCCEEEEE-----CCCHHHH
T ss_conf 787-476798157668989999999716----777299964-65667886999-99876305299997-----8877999
Q ss_pred HHHHHH-----CC-CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999983-----47-980997898999999999658988999944688663
Q gi|254781102|r 429 RAEIIH-----GI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~-----g~-~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
T Consensus 390 ~~~l~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPa~aSf 438 (458)
T PRK01710 390 KEAFKKVEEEKGIKIPIVIVNSLEEAVKVAKNIAEKGDIITL-SPACASF 438 (458)
T ss_pred HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 999987666316886523373599999999975889798998-9733110