HHsearch alignment for GI: 254781102 and conserved domain: PRK03803
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=393.83 Aligned_cols=320 Identities=20% Similarity=0.280 Sum_probs=238.0
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
T Consensus 106 ~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNiG~------------p~-~~-------~~~~~~~~~VlElSS 165 (448)
T PRK03803 106 AAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGNLGT------------PA-LD-------LLSDDVELYVLELSS 165 (448)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC------------HH-HH-------HHCCCCCEEEEECCC
T ss_conf 17898899858998388999999999865983799403276------------13-66-------525888789998664
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 66555431043212111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
T Consensus 166 fqL~~--~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~----~~~v~n~Dd~~~~~l~~~----~~~~~~f~ 235 (448)
T PRK03803 166 FQLET--TDQLNAEVATVLNISEDHLDRHGGMLAYHQAKHRIFRGA----KQVVVNRDDALTRPLVAD----GTPCWSFG 235 (448)
T ss_pred CHHHC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHHC----CCCEEEEE
T ss_conf 11203--545686289983587536546338999999987775388----789995860888888654----88579983
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33332200000014544432112221001-01223433222110577888775202676763111234433455210001
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~ 350 (497)
T Consensus 236 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~E~v~ 314 (448)
T PRK03803 236 LNAPDFGAFGLREE-DGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRCQWVR 314 (448)
T ss_pred CCCCCCCCCCEEEC-CCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 57765122316953-98399961653214333307676235998999999999829987898998863557120579999
Q ss_pred CCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHH
Q ss_conf 35578602300-03786899997412110023444035402665460046899999986198999908879898989999
Q gi|254781102|r 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 351 ~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~ 429 (497)
T Consensus 315 ~-~~Gv~fiNDSKaTN~~at~~Al~~~~~~~~~~iilI~G-G~~K~~d~~~-l~~~~~~~v~~v~l~-----G~~~~~i~ 386 (448)
T PRK03803 315 E-VDGVRYYNDSKGTNVGATLAAIEGLGADIEGKLVLIAG-GQGKGADFSE-LREPVAKYCRAVVLI-----GRDAELIE 386 (448)
T ss_pred E-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCHHH-HHHHHHHCCEEEEEE-----CCCHHHHH
T ss_conf 6-18889996899899789999999646523686899937-8666668799-999997366099997-----95999999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9998347980997898999999999658988999944688663
Q gi|254781102|r 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 430 ~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
T Consensus 387 ~~l~~~-~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPa~aSf 427 (448)
T PRK03803 387 QALGDA-VPLVRAATLEEAVTQAAELAQPGDAVLL-SPACASL 427 (448)
T ss_pred HHHCCC-CCEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 975068-9879949999999999985789898998-9744020