HHsearch alignment for GI: 254781102 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=380.92 Aligned_cols=359 Identities=20% Similarity=0.338 Sum_probs=246.7
Q ss_pred HHHHHCCCEEEEECCCCCCC--CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHH
Q ss_conf 99998598899984732233--3432234797099979989999999999827620022456543065200012333332
Q gi|254781102|r 61 PQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 61 ~~A~~~GA~~~i~~~~~~~~--~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~ 138 (497)
T Consensus 61 ~~~~~~~~d~vV~SPgI~~~~p~l~~a~~~gi~i~--~~~-----el~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~ 133 (445)
T PRK04308 61 KDALDNGFDILALSPGISERQPDIEAFKQNGGRVL--GDI-----ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCI 133 (445)
T ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHH-----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 36501599999989953899999999997599571--599-----99999984169957999489983779999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 10232222234544332355445767531221111111011223333356676665554310432121112321545543
Q gi|254781102|r 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 (497)
Q Consensus 139 ~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd 218 (497)
T Consensus 134 ~~g~~~~~~GNiG~p~~-------------~~--~~~-~~~~~~d~~VlElSSfql~~--~~~~~p~iavitNi~~DHLD 195 (445)
T PRK04308 134 KCGLDTVIAGNIGTPVL-------------EA--ELQ-REGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLD 195 (445)
T ss_pred HCCCCEEEEEECCCCCH-------------HH--HHH-HCCCCCCEEEEEEECCCCCC--CCCCCCCEEEECCCCHHHHH
T ss_conf 75996299850375211-------------11--444-32787867999960334466--55437638998589856754
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 21101122345542100000012232111254200012221023565322222333-32200000014544432112221
Q gi|254781102|r 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEG 297 (497)
Q Consensus 219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~i~~~~ 297 (497)
T Consensus 196 ~h~s~e~Y~~aK~~if~----~~~~~vln~dd~~~~~~~~~----~~~v~~~~~~~~~d~~~~~-----~~~--~~~~~~ 260 (445)
T PRK04308 196 RYDDLLDYAHTKAKIFR----GDGVQVLNADDAFCRAMKRA----GREVKWFSLEHEADFWLER-----ETG--RLKQGN 260 (445)
T ss_pred HHCCHHHHHHHHHHHCC----CCCEEEECCCCHHHHHHHHC----CCCEEEEECCCCCCEEEEC-----CCC--EEEECC
T ss_conf 53599999999997445----79779993871999999866----9956998137656368961-----663--797468
Q ss_pred CE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHH
Q ss_conf 00-1-0122343322211057788877520267676311123443345521000135578602300-0378689999741
Q gi|254781102|r 298 KD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 (497)
Q Consensus 298 ~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~ 374 (497)
T Consensus 261 ~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v~~~-~GV~~iNDSKaTn~~at~~Al~ 339 (445)
T PRK04308 261 EDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIA 339 (445)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEEECCCCCCHHHHHHHHH
T ss_conf 114543025667654798899999999982998899999987579999862899864-8988980798888899999998
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 21100234440354026654600468999999861989999088798989899999998347980997898999999999
Q gi|254781102|r 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 (497)
Q Consensus 375 ~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~ 454 (497)
T Consensus 340 ~~~----~~i~lI~G-G~~Kg~d~~~l-~~~~~~~~~~v~~~-----G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~ 408 (445)
T PRK04308 340 GLQ----NPLFVILG-GMGKGQDFTPL-RDALAGKAKGVFLI-----GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYA 408 (445)
T ss_pred HCC----CCEEEEEC-CCCCCCCHHHH-HHHHHHHCEEEEEE-----CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf 277----97799976-76677786999-99987525699998-----979999999886379855876879999999997
Q ss_pred HCCCCCEEEEECCCCCCC
Q ss_conf 658988999944688663
Q gi|254781102|r 455 MLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 455 ~a~~gDvili~GkG~e~~ 472 (497)
T Consensus 409 ~a~~g~~VLl-SPa~aSf 425 (445)
T PRK04308 409 QAEAGDIVLL-SPACASF 425 (445)
T ss_pred HCCCCCEEEE-CCCCCCC
T ss_conf 4889898998-9734040