HHsearch alignment for GI: 254781102 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=366.41 Aligned_cols=309 Identities=19% Similarity=0.226 Sum_probs=216.1
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
T Consensus 113 ~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~P~-------------~~~---~~--~~~~~d~~VlElSSf 174 (468)
T PRK04690 113 SVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGQPL-------------LEV---LA--PQPAPAYWAIELSSY 174 (468)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHH-------------HHH---HC--CCCCCCEEEEEECCC
T ss_conf 678789996998589999999999985799828986776446-------------765---32--478885799994320
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65554310432121112321545543211011223455421000000122321112542000122210235653222223
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~ 272 (497)
T Consensus 175 QLe~~~~~~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~--~~~~vin~~D~~~~~~~----~~~~~v~~~~~ 248 (468)
T PRK04690 175 QTGDVGRSGARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGR--PRIALLNAADPRLAALQ----LPDSEVRWFNH 248 (468)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCC--CCEEEEECCCHHHHHHH----CCCCCEEEECC
T ss_conf 5765453147877875304888787460899999999999996579--97799978888999752----57784699517
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 33322000000145444321122210010-12234332221105778887752026767631112344334552100013
Q gi|254781102|r 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 (497)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~ 351 (497)
T Consensus 249 ~~~-~~~~~-------~-~~~~~~~~~~~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF~glpHRlE~v~~ 319 (468)
T PRK04690 249 PDG-WHVRG-------D-VVYRGEQAIFDTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASFRPLPNRLQELGS 319 (468)
T ss_pred CCC-EEECC-------C-EEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 775-37606-------6-78835620111123677770048769999999998389889999987426799975279999
Q ss_pred CCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC-EEEECCCCCCCCCHHHHH
Q ss_conf 5578602300-03786899997412110023444035402665460046899999986198-999908879898989999
Q gi|254781102|r 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 352 ~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad-~vi~t~d~~r~e~~~~I~ 429 (497)
T Consensus 320 ~-~gv~fiNDSKATN~~a~~~AL~~f---~~~~iilI~G-G~~Kg~d~~~l-~~~~~~~~~~~vi~~-----G~~~~~i~ 388 (468)
T PRK04690 320 V-DGITYVNDSISTTPHASLAALDCF---AGRRVALLVG-GHDRGLDWTDF-AAHMAQQAPLEIVTM-----GANGPRIH 388 (468)
T ss_pred E-CCEEEECCCCCCCHHHHHHHHHHC---CCCCEEEEEC-CCCCCCCHHHH-HHHHHHCCCEEEEEE-----CCCHHHHH
T ss_conf 8-999997378778989999999727---6685799973-67667787999-999863376899997-----47889999
Q ss_pred HHHHHCCC----CEEEECCHHHHHHHHHH-HCCCCCEEEEE
Q ss_conf 99983479----80997898999999999-65898899994
Q gi|254781102|r 430 AEIIHGIP----GFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465 (497)
Q Consensus 430 ~~i~~g~~----~~~~~~dr~eAi~~A~~-~a~~gDvili~ 465 (497)
T Consensus 389 ~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLS 429 (468)
T PRK04690 389 ALLAPLADAGRFGLHAADDLPHAMALARTALGAQGGVVLLS 429 (468)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99752344563102540679999999999605899989979