HHsearch alignment for GI: 254781102 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=92.26  E-value=0.86  Score=24.36  Aligned_cols=123  Identities=10%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCC
Q ss_conf             877520267676311123443345521000135578602300---0378689999741211002-344403540266546
Q gi|254781102|r  320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD---YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD  395 (497)
Q Consensus       320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD---yahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd  395 (497)
T Consensus       227 tYa~IlgvPv~vv~~~-~eL~~aL~~l~------~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~--  297 (404)
T PRK06995        227 IYGKILGVPVHAVKDA-ADLRLALAELR------NKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSH--  297 (404)
T ss_pred             HHHHHCCCEEEEECCH-HHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--
T ss_conf             9998759559995999-99999999708------99999980999897688899999999735788528999779899--


Q ss_pred             CCHHHHHHHHHHHHC----CEEEEC-CCCCCCCCHHHHHHHHH-HCCC-----------CEEEECCHHHHHHHHHHHC
Q ss_conf             004689999998619----899990-88798989899999998-3479-----------8099789899999999965
Q gi|254781102|r  396 QGKRPIMGKIALDLA----DIAIVT-DDNPRSEDPEKIRAEII-HGIP-----------GFIEKGNRIEAIRTAIEML  456 (497)
Q Consensus       396 ~~kr~~mg~~a~~~a----d~vi~t-~d~~r~e~~~~I~~~i~-~g~~-----------~~~~~~dr~eAi~~A~~~a  456 (497)
T Consensus       298 ---~~dl~~i~~~f~~~~~~~~I~TKLDEt~--~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~  370 (404)
T PRK06995        298 ---GDTLNEVVQAYRGPGLAGCILTKLDEAA--SLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAP  370 (404)
T ss_pred             ---HHHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCC
T ss_conf             ---9999999998446999839983040679--723999999997898599818995842121089899999986264