HHsearch alignment for GI: 254781102 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=92.26 E-value=0.86 Score=24.36 Aligned_cols=123 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCC
Q ss_conf 877520267676311123443345521000135578602300---0378689999741211002-344403540266546
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD---YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD 395 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD---yahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd 395 (497)
T Consensus 227 tYa~IlgvPv~vv~~~-~eL~~aL~~l~------~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~-- 297 (404)
T PRK06995 227 IYGKILGVPVHAVKDA-ADLRLALAELR------NKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSH-- 297 (404)
T ss_pred HHHHHCCCEEEEECCH-HHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--
T ss_conf 9998759559995999-99999999708------99999980999897688899999999735788528999779899--
Q ss_pred CCHHHHHHHHHHHHC----CEEEEC-CCCCCCCCHHHHHHHHH-HCCC-----------CEEEECCHHHHHHHHHHHC
Q ss_conf 004689999998619----899990-88798989899999998-3479-----------8099789899999999965
Q gi|254781102|r 396 QGKRPIMGKIALDLA----DIAIVT-DDNPRSEDPEKIRAEII-HGIP-----------GFIEKGNRIEAIRTAIEML 456 (497)
Q Consensus 396 ~~kr~~mg~~a~~~a----d~vi~t-~d~~r~e~~~~I~~~i~-~g~~-----------~~~~~~dr~eAi~~A~~~a 456 (497)
T Consensus 298 ---~~dl~~i~~~f~~~~~~~~I~TKLDEt~--~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~ 370 (404)
T PRK06995 298 ---GDTLNEVVQAYRGPGLAGCILTKLDEAA--SLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAP 370 (404)
T ss_pred ---HHHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCC
T ss_conf ---9999999998446999839983040679--723999999997898599818995842121089899999986264