HHsearch alignment for GI: 254781102 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=600.64 Aligned_cols=412 Identities=22% Similarity=0.285 Sum_probs=335.6
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 57430024530231468988998038876768889999985988999847322333432234797099979989999999
Q gi|254781102|r 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 (497)
Q Consensus 26 ~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~l 105 (497)
T Consensus 510 ~~~~~~~isiDSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~~--------~~~~p~I~V~Dt~~AL~~l 581 (953)
T PRK11929 510 LKEISGAVSTDSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQVA--------DVALPQLVLGDTLAALGRM 581 (953)
T ss_pred HHHHCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC--------CCCCCEEEECCHHHHHHHH
T ss_conf 78761856743773688988999714877779999999986997999925666--------6788979968989999999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9998276200224565430652000123333321023222-223454433235544576753122111111101122333
Q gi|254781102|r 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 (497)
Q Consensus 106 a~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~-~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~ 184 (497)
T Consensus 582 A~~~r~~~~~~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN-----~iGvP--ltll~l-----~~~~~~ 649 (953)
T PRK11929 582 ATAWRSSFSLPVIAITGSNGKTTTKEMIAAILAQWQGDDGRVTATEGNFNN-----EIGVP--LTLLRL-----RARHRA 649 (953)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-----CCCCC--HHHHCC-----CCCCHH
T ss_conf 999997579978999678850789999999998517778438855674378-----66671--787579-----963465
Q ss_pred CCCCCC-HHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 335667-66655543104-3212111232154554321101122345542100000012232111254200012221023
Q gi|254781102|r 185 VSVEAS-SHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 (497)
Q Consensus 185 ~vlEvS-S~gl~~~rl~~-i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~ 262 (497)
T Consensus 650 aVlEmGms~~GEI~~L~~i~~PdiaVITNIg~aHLe~fgs~e~Ia~aK~eIf~~-l~~~g~aIlN~DD~~~~~~~~~~~~ 728 (953)
T PRK11929 650 AVFELGMNHPGEIARLAAIAAPTVALVTNAQREHQEFLHSVEAVARANGALINA-LPEDGIAVVNGDDPYAAIWAKLAGA 728 (953)
T ss_pred HHHHHCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHCC
T ss_conf 787652896226998606258977887445699876618999999999999831-5879799993886889999998457
Q ss_pred CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56532222233-33220000001454443211222100101223433222110577888775202676763111234433
Q gi|254781102|r 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 263 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
T Consensus 729 ~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~ 808 (953)
T PRK11929 729 RRVLRFGLSLQPGLDVYAEDIVTQAAGTLCFVVTPAGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQA 808 (953)
T ss_pred CCEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 87599985258987689999898689649999978956999956897999999999999999939999999999866999
Q ss_pred HHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC---CCCHHHHHHHHHHH-HCCEEEEC
Q ss_conf 45521000135578602300-037868999974121100234440354026654---60046899999986-19899990
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALD-LADIAIVT 416 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdr---d~~kr~~mg~~a~~-~ad~vi~t 416 (497)
T Consensus 809 ~~gR~e~~~~-~~g~~iIDDsYNANP~Sm~aAl~~L~~~~~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~v 887 (953)
T PRK11929 809 VKGRMQRRQL-SDGTVIIDDTYNANPDSMRAAIDVLARLPGPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITL 887 (953)
T ss_pred CCCCCEEEEE-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998789995-799799997848889999999999852879986999848500245789999999999997599999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 88798989899999998347980997898999999999658988999944
Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
T Consensus 888 G-----~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~l~~~d~VLVKG 930 (953)
T PRK11929 888 G-----EASRDAAHAF--GKAARACFASVDEIIAALRGLLPSSDIVLIKG 930 (953)
T ss_pred C-----HHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 6-----5799998656--84657883999999999985589999999971