HHsearch alignment for GI: 254781102 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=0 Score=545.35 Aligned_cols=434 Identities=17% Similarity=0.181 Sum_probs=335.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCC--CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 678988732033556555743002453023146--898899803887676888999998598899984732233343223
Q gi|254781102|r 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~--~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~ 86 (497)
T Consensus 6 ~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~----~~ 81 (824)
T PRK11930 6 EELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDL----ME 81 (824)
T ss_pred HHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCC----CC
T ss_conf 99998639788578888883236399358876579986899956788887999999998899099994566554----55
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47970999799899999999998276200224565430652000123333321023222223454433235544576753
Q gi|254781102|r 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 (497)
Q Consensus 87 ~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~ 166 (497)
T Consensus 82 ~~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~---T~gn~Nn~IG-----v-- 151 (824)
T PRK11930 82 KKPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPRSYNSQIG-----V-- 151 (824)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEC---CCCCCCCCCC-----H--
T ss_conf 78877899898999999999999974899899994999789999999999745786852---8876687425-----8--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 122111111101122333335667-66655543104-3212111232154554321101122345542100000012232
Q gi|254781102|r 167 PIYLAKALSYLSSQGVTHVSVEAS-SHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 (497)
Q Consensus 167 ~~~l~~~l~~~~~~g~~~~vlEvS-S~gl~~~rl~~-i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ 244 (497)
T Consensus 152 PLTll~l-----~~~~e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~----~~~~ 222 (824)
T PRK11930 152 PLSVWQM-----NEEHELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKD----CDVI 222 (824)
T ss_pred HHHHHCC-----CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHC----CCCE
T ss_conf 9998649-----845808999907898146999953527999999075098766458999999999997621----7817
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1112542000122210235653222223--33322000000145444321122210010122343322211057788877
Q gi|254781102|r 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 (497)
Q Consensus 245 ViN~Dd~~~~~l~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a 322 (497)
T Consensus 223 i~n~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava 301 (824)
T PRK11930 223 IYNGDNEEISNCIHKSNL-TRREIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVA 301 (824)
T ss_pred EEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 994685789999976336-7628998347866534666543058816999996890699993699889999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCC---
Q ss_conf 520267676311123443345521000135578602300-0378689999741211002-34440354026654600---
Q gi|254781102|r 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG--- 397 (497)
Q Consensus 323 ~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~~--- 397 (497)
T Consensus 302 ~~lGv~~~~i~~~L~~~~p~~~Rlev~~-g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ 380 (824)
T PRK11930 302 LYLMYSADQITKRFARLEPVEMRLEVKE-GINNCTLINDSYNSDLASLDIALDFLERRKQSKKKTLILSDILQSGQSPEE 380 (824)
T ss_pred HHCCCCHHHHHHHHHHCCCCCCEEEEEE-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHH
T ss_conf 9839999999999841896545137999-799809995666699899999999997403578569998774432876078
Q ss_pred HHHHHHHHHH-HHCCEEEECCCCCCCCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHCCCCCEEEEEC--------
Q ss_conf 4689999998-61989999088798989899999998347--980997898999999999658988999944--------
Q gi|254781102|r 398 KRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-------- 466 (497)
Q Consensus 398 kr~~mg~~a~-~~ad~vi~t~d~~r~e~~~~I~~~i~~g~--~~~~~~~dr~eAi~~A~~~a~~gDvili~G-------- 466 (497)
T Consensus 381 ly~~Vg~l~~~~~i~~ligiG--------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~e~ 451 (824)
T PRK11930 381 LYRKVAQLISSAKINRVIGIG--------EEISSEAK-KFEGIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQFEQ 451 (824)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--------HHHHHHHH-HCCCCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCHHH
T ss_conf 999999999976887899818--------89999998-645776589568999974274113689779980554566899
Q ss_pred -------CCCCCCEEEC
Q ss_conf -------6886635844
Q gi|254781102|r 467 -------KGHETVHIVT 476 (497)
Q Consensus 467 -------kG~e~~~~~~ 476 (497)
T Consensus 452 i~~~l~~~~h~T~lEId 468 (824)
T PRK11930 452 ISERLELKVHETILEIN 468 (824)
T ss_pred HHHHHHHCCCCCEEEEE
T ss_conf 99999645588589998