HHsearch alignment for GI: 254781102 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.80  E-value=1.2  Score=23.38  Aligned_cols=85  Identities=9%  Similarity=0.048  Sum_probs=37.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHHHHHHHHHHHHCCC-CCCCEEEECCCCC
Q ss_conf             8775202676763111234433455210001355786023000---37-86899997412110023-4440354026654
Q gi|254781102|r  320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNSLEMILKNIRTITS-GRIIVVFGCGGDR  394 (497)
Q Consensus       320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s~~~aL~~l~~~~~-~r~i~V~G~~Gdr  394 (497)
T Consensus       227 tya~il~vp~~v~~~-~~dl~~~l~~~~------~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~-  298 (388)
T PRK12723        227 TYGDIMGIPVKAIES-FKDLKEEITQSK------DFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-  298 (388)
T ss_pred             HHHHHHCCCEEEECC-HHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-
T ss_conf             999997880698578-899999999724------999999958998856899999999999741898459999879899-


Q ss_pred             CCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf             6004689999998619----899990
Q gi|254781102|r  395 DQGKRPIMGKIALDLA----DIAIVT  416 (497)
Q Consensus       395 d~~kr~~mg~~a~~~a----d~vi~t  416 (497)
T Consensus       299 ----~~d~~~i~~~f~~~~~~~~I~T  320 (388)
T PRK12723        299 ----TSDIKEIFHQFSPFSYKTVIFT  320 (388)
T ss_pred             ----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf             ----9999999998427999849998