HHsearch alignment for GI: 254781102 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.80 E-value=1.2 Score=23.38 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHHHHHHHHHHHHCCC-CCCCEEEECCCCC
Q ss_conf 8775202676763111234433455210001355786023000---37-86899997412110023-4440354026654
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s~~~aL~~l~~~~~-~r~i~V~G~~Gdr 394 (497)
T Consensus 227 tya~il~vp~~v~~~-~~dl~~~l~~~~------~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~- 298 (388)
T PRK12723 227 TYGDIMGIPVKAIES-FKDLKEEITQSK------DFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK- 298 (388)
T ss_pred HHHHHHCCCEEEECC-HHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-
T ss_conf 999997880698578-899999999724------999999958998856899999999999741898459999879899-
Q ss_pred CCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf 6004689999998619----899990
Q gi|254781102|r 395 DQGKRPIMGKIALDLA----DIAIVT 416 (497)
Q Consensus 395 d~~kr~~mg~~a~~~a----d~vi~t 416 (497)
T Consensus 299 ----~~d~~~i~~~f~~~~~~~~I~T 320 (388)
T PRK12723 299 ----TSDIKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred ----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf ----9999999998427999849998