HHsearch alignment for GI: 254781102 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.83  E-value=0.22  Score=28.26  Aligned_cols=84  Identities=11%  Similarity=0.099  Sum_probs=43.6

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHH---HHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             8775202676763111234433455210001355786023000---37-8689---999741211002344403540266
Q gi|254781102|r  320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNS---LEMILKNIRTITSGRIIVVFGCGG  392 (497)
Q Consensus       320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s---~~~aL~~l~~~~~~r~i~V~G~~G  392 (497)
T Consensus       273 tYa~Il~iPv~vv~-~~~el~~a---l~~---~~~-DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt  344 (432)
T PRK12724        273 RYADTMGMPFYPVK-DIKKFKET---LAR---DGS-ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHHHHHCCCEEEEE-CHHHHHHH---HHH---CCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             99998599459951-89999999---985---699-99999299989789999999999998636678851799997889


Q ss_pred             CCCCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf             546004689999998619----899990
Q gi|254781102|r  393 DRDQGKRPIMGKIALDLA----DIAIVT  416 (497)
Q Consensus       393 drd~~kr~~mg~~a~~~a----d~vi~t  416 (497)
T Consensus       345 k-----~~dl~~ii~~f~~l~~~~lIfT  367 (432)
T PRK12724        345 S-----YHHTLTVLKAYESLNYRRILLT  367 (432)
T ss_pred             C-----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf             9-----8999999998426999849997