HHsearch alignment for GI: 254781102 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=90.18 E-value=0.12 Score=30.01 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=29.2
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlI 156 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 28999788877659999999999999779988999