HHsearch alignment for GI: 254781102 and conserved domain: pfam04613
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins.
Probab=94.83 E-value=0.13 Score=29.73 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 74300245302314689889980388767688899999859889998473223334322347970999799899999999
Q gi|254781102|r 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106 (497)
Q Consensus 27 d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la 106 (497)
T Consensus 2 d~~I~~va~-l~~A~~~~isF~------~n~ky~~~l~~t~A~aviv~~~~~~-----~~~~~~~~Iiv~nP~~afa~i~ 69 (72)
T pfam04613 2 DREISGIAP-LEEAGPGDISFL------ANPKYLKQLKTTKASAVIVTPDFAD-----LVPEGIALLVVKNPYLAFAKLL 69 (72)
T ss_pred CCEEECCCC-HHHCCCCCEEEE------CCHHHHHHHHHCCCCEEEECHHHHH-----HCCCCCCEEEECCHHHHHHHHH
T ss_conf 947804547-643899978996------6887899998688989997378874-----5768986899899899999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254781102|r 107 SRL 109 (497)
Q Consensus 107 ~~~ 109 (497)
T Consensus 70 ~lF 72 (72)
T pfam04613 70 QLF 72 (72)
T ss_pred HHC
T ss_conf 759