Query gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 497
No_of_seqs 257 out of 8484
Neff 7.9
Searched_HMMs 23785
Date Wed Jun 1 00:59:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781102.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e8c_A UDP-N-acetylmuramoylala 100.0 0 0 745.6 36.1 469 24-496 15-493 (498)
2 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 0 0 698.1 31.3 462 25-495 57-530 (535)
3 1gg4_A UDP-N-acetylmuramoylala 100.0 0 0 607.3 20.0 420 10-469 8-434 (452)
4 2am1_A SP protein, UDP-N-acety 100.0 0 0 583.4 22.3 422 1-469 1-440 (454)
5 3hn7_A UDP-N-acetylmuramate-L- 100.0 0 0 458.1 19.6 353 114-470 121-506 (524)
6 3lk7_A UDP-N-acetylmuramoylala 100.0 0 0 440.4 19.7 411 31-494 20-450 (451)
7 1j6u_A UDP-N-acetylmuramate-al 100.0 0 0 427.3 14.2 393 35-494 64-466 (469)
8 2vos_A Folylpolyglutamate synt 100.0 0 0 412.0 18.2 346 110-466 57-470 (487)
9 2f00_A UDP-N-acetylmuramate--L 100.0 0 0 413.2 12.9 340 115-482 119-485 (491)
10 1p3d_A UDP-N-acetylmuramate--a 100.0 0 0 400.6 20.9 329 115-469 118-461 (475)
11 1o5z_A Folylpolyglutamate synt 100.0 0 0 381.0 18.0 353 102-474 38-442 (442)
12 2x5o_A UDP-N-acetylmuramoylala 100.0 0 0 378.1 12.0 375 33-465 32-410 (439)
13 3nrs_A Dihydrofolate:folylpoly 100.0 0 0 367.9 18.9 340 110-466 45-423 (437)
14 1jbw_A Folylpolyglutamate synt 100.0 0 0 349.8 16.3 357 89-466 12-411 (428)
15 1w78_A FOLC bifunctional prote 100.0 0 0 338.0 17.6 340 98-466 35-402 (422)
16 3eag_A UDP-N-acetylmuramate:L- 100.0 3.4E-40 1.4E-44 278.8 6.6 215 113-343 106-325 (326)
17 3mvn_A UDP-N-acetylmuramate:L- 99.8 9.8E-21 4.1E-25 152.5 11.0 140 324-469 8-149 (163)
18 1sq5_A Pantothenate kinase; P- 95.3 0.014 6E-07 34.5 4.1 43 106-148 68-117 (308)
19 1a7j_A Phosphoribulokinase; tr 93.9 0.016 6.7E-07 34.2 1.4 32 116-147 6-39 (290)
20 3c8u_A Fructokinase; YP_612366 93.8 0.035 1.5E-06 32.0 3.1 46 102-147 8-56 (208)
21 2xij_A Methylmalonyl-COA mutas 93.7 0.32 1.4E-05 25.7 9.1 144 314-466 537-692 (762)
22 3eh0_A UDP-3-O-[3-hydroxymyris 93.6 0.093 3.9E-06 29.2 4.9 75 26-114 21-95 (341)
23 3aez_A Pantothenate kinase; tr 93.4 0.061 2.6E-06 30.4 3.7 26 117-142 92-119 (312)
24 1byi_A Dethiobiotin synthase; 92.8 0.025 1.1E-06 32.9 1.0 33 116-148 2-37 (224)
25 1rz3_A Hypothetical protein rb 92.5 0.092 3.9E-06 29.3 3.6 49 98-146 3-55 (201)
26 2j37_W Signal recognition part 92.4 0.059 2.5E-06 30.5 2.5 30 118-148 107-136 (504)
27 3cio_A ETK, tyrosine-protein k 92.3 0.017 7.2E-07 34.0 -0.4 59 89-147 71-139 (299)
28 3end_A Light-independent proto 91.8 0.038 1.6E-06 31.7 0.9 36 113-148 39-76 (307)
29 2iu8_A LPXD, UDP-3-O-[3-hydrox 90.7 0.23 9.8E-06 26.6 4.1 78 26-113 43-120 (374)
30 3fgn_A Dethiobiotin synthetase 90.5 0.071 3E-06 30.0 1.3 35 114-148 25-62 (251)
31 3la6_A Tyrosine-protein kinase 90.4 0.19 7.9E-06 27.2 3.4 37 111-147 88-127 (286)
32 3b9q_A Chloroplast SRP recepto 89.8 0.045 1.9E-06 31.3 -0.3 31 117-148 105-135 (302)
33 2qmo_A Dethiobiotin synthetase 89.5 0.088 3.7E-06 29.4 1.1 34 116-149 2-38 (220)
34 1np6_A Molybdopterin-guanine d 89.0 0.12 4.9E-06 28.6 1.4 34 115-148 6-41 (174)
35 2ph1_A Nucleotide-binding prot 88.6 0.096 4E-06 29.1 0.8 33 116-148 19-54 (262)
36 2afh_E Nitrogenase iron protei 88.1 0.097 4.1E-06 29.1 0.5 34 115-148 2-37 (289)
37 2obn_A Hypothetical protein; p 87.9 0.033 1.4E-06 32.2 -2.0 15 402-416 246-260 (349)
38 2qm8_A GTPase/ATPase; G protei 87.7 0.33 1.4E-05 25.6 3.0 50 99-148 38-90 (337)
39 2www_A Methylmalonic aciduria 87.5 0.1 4.3E-06 29.0 0.3 34 115-148 74-109 (349)
40 1xjc_A MOBB protein homolog; s 87.4 0.13 5.6E-06 28.2 0.9 35 114-148 3-39 (169)
41 3bfv_A CAPA1, CAPB2, membrane 87.1 0.24 1E-05 26.5 2.1 48 101-148 65-118 (271)
42 2ffh_A Protein (FFH); SRP54, s 86.2 0.1 4.3E-06 29.0 -0.2 30 118-148 104-133 (425)
43 2jeo_A Uridine-cytidine kinase 85.7 0.21 8.7E-06 27.0 1.1 35 107-141 16-53 (245)
44 1req_A Methylmalonyl-COA mutas 85.6 1.6 6.7E-05 21.2 7.9 125 368-496 581-721 (727)
45 3ch4_B Pmkase, phosphomevalona 84.8 0.23 9.6E-06 26.7 1.0 27 113-139 9-37 (202)
46 2p67_A LAO/AO transport system 84.8 0.5 2.1E-05 24.5 2.7 34 114-147 55-90 (341)
47 1g3q_A MIND ATPase, cell divis 84.5 0.2 8.2E-06 27.1 0.5 33 115-147 2-37 (237)
48 3kl4_A SRP54, signal recogniti 84.4 0.12 5E-06 28.6 -0.6 33 116-148 98-132 (433)
49 1uj2_A Uridine-cytidine kinase 84.2 0.26 1.1E-05 26.3 1.1 25 117-141 24-50 (252)
50 2f1r_A Molybdopterin-guanine d 84.2 0.22 9.1E-06 26.9 0.7 33 116-148 3-37 (171)
51 1hyq_A MIND, cell division inh 84.1 0.24 1E-05 26.6 0.8 33 116-148 3-38 (263)
52 2woo_A ATPase GET3; tail-ancho 83.9 0.31 1.3E-05 25.9 1.3 38 112-149 16-55 (329)
53 3dm5_A SRP54, signal recogniti 83.9 0.15 6.4E-06 27.9 -0.2 30 118-148 106-135 (443)
54 1cp2_A CP2, nitrogenase iron p 83.3 0.28 1.2E-05 26.1 0.9 32 116-147 2-35 (269)
55 3k9g_A PF-32 protein; ssgcid, 83.1 0.24 1E-05 26.6 0.5 32 115-147 27-61 (267)
56 1ihu_A Arsenical pump-driving 82.8 0.35 1.5E-05 25.5 1.3 33 115-147 8-42 (589)
57 3fkq_A NTRC-like two-domain pr 81.1 0.39 1.6E-05 25.2 1.0 34 115-148 143-179 (373)
58 1wcv_1 SOJ, segregation protei 80.3 0.29 1.2E-05 26.0 0.1 34 115-148 6-42 (257)
59 1j3k_A Bifunctional dihydrofol 79.7 1 4.3E-05 22.5 2.7 71 338-417 115-186 (280)
60 3p32_A Probable GTPase RV1496/ 79.4 0.96 4.1E-05 22.6 2.5 45 104-148 67-114 (355)
61 3jsu_A Dihydrofolate reductase 78.5 1.1 4.8E-05 22.2 2.7 22 367-388 454-475 (608)
62 1odf_A YGR205W, hypothetical 3 78.4 1.3 5.6E-05 21.7 3.0 41 99-139 13-57 (290)
63 2v3c_C SRP54, signal recogniti 78.1 0.67 2.8E-05 23.7 1.4 33 116-148 100-134 (432)
64 1kht_A Adenylate kinase; phosp 77.3 0.59 2.5E-05 24.0 0.9 30 115-144 3-34 (192)
65 3cse_A Dihydrofolate reductase 77.0 1.2 5E-05 22.0 2.4 72 337-417 64-141 (227)
66 1dek_A Deoxynucleoside monopho 74.4 0.61 2.6E-05 23.9 0.4 22 116-137 2-25 (241)
67 1vma_A Cell division protein F 74.3 0.82 3.5E-05 23.1 1.0 31 117-147 106-138 (306)
68 1dbg_A Chondroitinase B; beta 73.5 1.9 8E-05 20.7 2.7 17 38-54 39-55 (506)
69 3iqw_A Tail-anchored protein t 73.2 1 4.2E-05 22.5 1.3 37 113-149 14-52 (334)
70 2qy9_A Cell division protein F 72.4 1.1 4.6E-05 22.3 1.3 29 118-147 105-133 (309)
71 1jjv_A Dephospho-COA kinase; P 72.4 0.69 2.9E-05 23.6 0.3 26 116-145 3-30 (206)
72 2grj_A Dephospho-COA kinase; T 72.1 0.74 3.1E-05 23.4 0.4 26 110-135 7-34 (192)
73 3cwq_A Para family chromosome 72.0 0.94 3.9E-05 22.7 0.9 30 117-147 2-34 (209)
74 3do6_A Formate--tetrahydrofola 71.9 1.3 5.4E-05 21.8 1.5 37 110-146 38-80 (543)
75 1eg7_A Formyltetrahydrofolate 71.8 1.9 7.9E-05 20.7 2.4 38 109-146 51-94 (557)
76 3ea0_A ATPase, para family; al 71.7 0.8 3.4E-05 23.2 0.5 34 114-147 3-40 (245)
77 1uf9_A TT1252 protein; P-loop, 71.5 0.86 3.6E-05 23.0 0.6 25 116-144 9-35 (203)
78 2if2_A Dephospho-COA kinase; a 70.6 0.97 4.1E-05 22.6 0.7 26 116-145 2-29 (204)
79 1nks_A Adenylate kinase; therm 70.6 1.1 4.8E-05 22.2 1.0 29 116-144 2-32 (194)
80 1vht_A Dephospho-COA kinase; s 70.4 0.86 3.6E-05 23.0 0.4 26 116-145 5-32 (218)
81 3io3_A DEHA2D07832P; chaperone 70.2 1.6 6.6E-05 21.3 1.7 39 111-149 14-56 (348)
82 2yyb_A Hypothetical protein TT 70.2 4.7 0.0002 18.2 6.8 68 1-78 1-68 (242)
83 3e70_C DPA, signal recognition 70.0 1.8 7.5E-05 20.9 1.9 32 116-147 130-163 (328)
84 3ez9_A Para; DNA binding, wing 69.5 1.9 7.8E-05 20.8 1.9 33 115-147 111-152 (403)
85 2yvu_A Probable adenylyl-sulfa 68.9 1.3 5.5E-05 21.8 1.0 33 112-144 10-44 (186)
86 1zu4_A FTSY; GTPase, signal re 68.4 1.3 5.3E-05 21.9 0.9 32 116-147 106-139 (320)
87 2oze_A ORF delta'; para, walke 68.2 0.78 3.3E-05 23.2 -0.2 33 116-148 37-72 (298)
88 2qt1_A Nicotinamide riboside k 67.3 1.4 5.7E-05 21.7 0.9 24 116-139 22-47 (207)
89 2woj_A ATPase GET3; tail-ancho 67.2 2.2 9.1E-05 20.4 1.9 39 111-149 14-56 (354)
90 2g0t_A Conserved hypothetical 65.6 1.8 7.5E-05 20.9 1.2 91 359-462 225-316 (350)
91 2gks_A Bifunctional SAT/APS ki 65.5 3 0.00012 19.5 2.3 87 13-112 21-110 (546)
92 2bl9_A Dihydrofolate reductase 65.3 4.4 0.00018 18.4 3.2 69 337-417 123-195 (238)
93 2vli_A Antibiotic resistance p 64.4 1.8 7.4E-05 20.9 1.0 26 114-139 4-31 (183)
94 1ls1_A Signal recognition part 63.7 1.9 7.9E-05 20.8 1.0 16 480-495 279-294 (295)
95 2i3b_A HCR-ntpase, human cance 63.7 1.7 7.2E-05 21.0 0.8 26 116-141 2-29 (189)
96 2j28_9 Signal recognition part 63.0 3.5 0.00015 19.0 2.3 30 118-148 105-135 (430)
97 2wwf_A Thymidilate kinase, put 62.8 2.6 0.00011 19.9 1.6 33 115-147 10-44 (212)
98 2f6r_A COA synthase, bifunctio 60.3 2.1 8.7E-05 20.5 0.8 25 116-144 76-102 (281)
99 3lw7_A Adenylate kinase relate 59.6 1.9 7.9E-05 20.8 0.4 25 116-144 2-28 (179)
100 3hdt_A Putative kinase; struct 58.4 2.4 0.0001 20.0 0.8 24 115-138 14-39 (223)
101 3grk_A Enoyl-(acyl-carrier-pro 57.3 8 0.00034 16.7 7.2 21 55-75 45-65 (293)
102 1aoe_A DHFR, dihydrofolate red 56.5 4.1 0.00017 18.5 1.7 69 338-417 65-134 (192)
103 1j8m_F SRP54, signal recogniti 56.4 8.3 0.00035 16.6 5.5 29 118-147 104-132 (297)
104 2fp4_B Succinyl-COA ligase [GD 55.6 8.5 0.00036 16.5 6.1 95 358-458 292-394 (395)
105 1sgw_A Putative ABC transporte 55.6 2.1 8.7E-05 20.5 0.1 27 112-138 32-60 (214)
106 2z0h_A DTMP kinase, thymidylat 55.4 3 0.00013 19.4 0.9 31 117-147 2-34 (197)
107 2pez_A Bifunctional 3'-phospho 55.4 3 0.00012 19.5 0.8 30 114-143 4-35 (179)
108 1qhx_A CPT, protein (chloramph 54.6 2.6 0.00011 19.8 0.5 26 114-139 2-29 (178)
109 2zpa_A Uncharacterized protein 54.6 8.9 0.00037 16.4 7.2 20 115-134 192-213 (671)
110 3igf_A ALL4481 protein; two-do 54.3 1.5 6.2E-05 21.4 -0.8 32 117-148 4-37 (374)
111 3ez2_A Plasmid partition prote 53.9 3.5 0.00015 19.0 1.0 33 115-147 108-149 (398)
112 3hj3_A Chain A, crystal struct 53.8 3.4 0.00014 19.1 0.9 22 367-388 366-387 (521)
113 3jyh_A Dipeptidyl-peptidase 2; 53.5 9.2 0.00039 16.3 6.8 102 31-140 32-151 (469)
114 1knq_A Gluconate kinase; ALFA/ 53.2 3 0.00013 19.4 0.6 27 113-139 6-34 (175)
115 2nyd_A UPF0135 protein SA1388; 53.1 9.4 0.00039 16.2 7.1 68 1-78 5-72 (370)
116 3kb2_A SPBC2 prophage-derived 52.3 3 0.00013 19.4 0.5 23 116-138 2-26 (173)
117 1nn5_A Similar to deoxythymidy 51.5 4 0.00017 18.6 1.0 33 115-147 9-43 (215)
118 3nrr_A Dihydrofolate reductase 51.1 6.3 0.00026 17.4 2.0 28 92-122 102-129 (515)
119 1cke_A CK, MSSA, protein (cyti 50.9 2.6 0.00011 19.8 -0.0 28 116-143 6-35 (227)
120 3k31_A Enoyl-(acyl-carrier-pro 50.4 10 0.00043 15.9 7.4 34 41-75 28-64 (296)
121 2rhm_A Putative kinase; ZP_007 50.3 4.2 0.00017 18.5 0.9 25 114-138 4-30 (193)
122 1y63_A LMAJ004144AAA protein; 50.1 3.8 0.00016 18.8 0.7 27 112-138 7-35 (184)
123 1vdr_A DHFR, dihydrofolate red 49.6 11 0.00045 15.9 3.3 63 341-417 55-120 (162)
124 2bdt_A BH3686; alpha-beta prot 49.0 3.4 0.00014 19.1 0.3 24 115-138 2-27 (189)
125 2w3w_A Dihydrofolate reductase 49.0 11 0.00046 15.8 3.2 65 339-417 58-122 (167)
126 2fzi_A Dihydrofolate reductase 49.0 6.3 0.00027 17.3 1.7 71 338-417 68-145 (206)
127 3lv8_A DTMP kinase, thymidylat 49.0 4.8 0.0002 18.1 1.1 33 114-146 26-60 (236)
128 3ia4_A Dihydrofolate reductase 48.7 10 0.00044 15.9 2.8 64 340-417 53-116 (162)
129 3hno_A Pyrophosphate-dependent 48.4 9.3 0.00039 16.3 2.5 65 98-163 89-153 (419)
130 3ojf_A Enoyl-[acyl-carrier-pro 48.2 11 0.00047 15.7 8.2 20 56-75 21-40 (257)
131 3ix9_A Dihydrofolate reductase 47.6 11 0.00048 15.7 3.2 64 341-417 77-140 (190)
132 1zp6_A Hypothetical protein AT 47.3 4 0.00017 18.6 0.5 26 113-138 7-34 (191)
133 1ye8_A Protein THEP1, hypothet 46.3 4.3 0.00018 18.4 0.5 22 118-139 3-26 (178)
134 2v54_A DTMP kinase, thymidylat 46.2 4.8 0.0002 18.1 0.7 30 115-144 4-35 (204)
135 3fdi_A Uncharacterized protein 46.2 4.9 0.00021 18.0 0.8 23 116-138 7-31 (201)
136 2dpy_A FLII, flagellum-specifi 45.4 12 0.00052 15.5 4.7 13 131-143 97-109 (438)
137 4tmk_A Protein (thymidylate ki 45.1 6.4 0.00027 17.3 1.2 31 115-145 3-35 (213)
138 1df7_A DHFR, dihydrofolate red 44.2 12 0.00052 15.4 2.6 62 338-417 53-114 (159)
139 3gfo_A Cobalt import ATP-bindi 43.9 4.4 0.00018 18.4 0.3 25 114-138 33-59 (275)
140 1kmv_A DHFR, dihydrofolate red 43.6 13 0.00055 15.3 4.2 65 339-417 64-137 (186)
141 2pbr_A DTMP kinase, thymidylat 43.1 5.7 0.00024 17.6 0.7 30 117-146 2-33 (195)
142 3dfr_A Dihydrofolate reductase 43.1 12 0.00052 15.4 2.5 64 340-417 52-117 (162)
143 1gtv_A TMK, thymidylate kinase 42.9 6 0.00025 17.5 0.8 30 117-146 2-33 (214)
144 2zu0_C Probable ATP-dependent 42.0 5.5 0.00023 17.7 0.5 23 112-134 43-67 (267)
145 1p5z_B DCK, deoxycytidine kina 41.9 5.9 0.00025 17.6 0.6 28 115-142 24-53 (263)
146 2pd4_A Enoyl-[acyl-carrier-pro 41.9 14 0.00058 15.1 7.3 21 55-75 20-40 (275)
147 2vp4_A Deoxynucleoside kinase; 41.7 3.4 0.00014 19.0 -0.6 24 117-140 22-47 (230)
148 3kjh_A CO dehydrogenase/acetyl 41.5 3.4 0.00014 19.1 -0.6 28 121-148 8-35 (254)
149 3tmk_A Thymidylate kinase; pho 41.3 6.7 0.00028 17.2 0.9 29 114-142 4-34 (216)
150 1vpl_A ABC transporter, ATP-bi 40.1 5.6 0.00024 17.7 0.3 25 114-138 40-66 (256)
151 2hly_A AGR_C_4178P, hypothetic 39.9 15 0.00063 14.9 2.9 12 294-305 93-104 (207)
152 2oap_1 GSPE-2, type II secreti 39.7 15 0.00063 14.9 2.6 15 322-336 454-468 (511)
153 2hf9_A Probable hydrogenase ni 39.2 15 0.00063 14.9 2.4 45 94-138 14-63 (226)
154 2p91_A Enoyl-[acyl-carrier-pro 39.1 15 0.00065 14.8 7.5 19 56-74 36-54 (285)
155 1dbt_A Orotidine 5'-phosphate 38.6 16 0.00066 14.8 2.5 33 403-435 201-233 (239)
156 2ff7_A Alpha-hemolysin translo 38.4 5.8 0.00024 17.6 0.2 26 113-138 33-60 (247)
157 2jaq_A Deoxyguanosine kinase; 37.7 7.1 0.0003 17.0 0.5 23 117-139 2-26 (205)
158 2bbs_A Cystic fibrosis transme 37.4 6.9 0.00029 17.1 0.4 25 114-138 63-89 (290)
159 1vim_A Hypothetical protein AF 37.2 16 0.00069 14.6 4.4 55 353-419 89-143 (200)
160 2ck3_D ATP synthase beta chain 36.8 17 0.0007 14.6 7.8 17 443-459 465-481 (482)
161 2yz2_A Putative ABC transporte 36.4 6.7 0.00028 17.2 0.2 26 113-138 31-58 (266)
162 2ihy_A ABC transporter, ATP-bi 36.4 6.8 0.00029 17.1 0.3 26 113-138 45-72 (279)
163 1mv5_A LMRA, multidrug resista 36.3 6.9 0.00029 17.1 0.3 26 113-138 26-53 (243)
164 2pjz_A Hypothetical protein ST 36.1 6.6 0.00028 17.2 0.2 24 115-138 30-55 (263)
165 2ghi_A Transport protein; mult 36.1 6.7 0.00028 17.2 0.2 25 113-137 44-70 (260)
166 1pl8_A Human sorbitol dehydrog 35.8 17 0.00073 14.5 9.0 100 354-463 241-347 (356)
167 2pze_A Cystic fibrosis transme 35.8 7.1 0.0003 17.0 0.3 26 113-138 32-59 (229)
168 1ulu_A Enoyl-acyl carrier prot 35.6 17 0.00073 14.5 7.0 22 55-76 22-43 (261)
169 2q6t_A DNAB replication FORK h 35.2 15 0.00064 14.9 1.9 22 357-378 285-307 (444)
170 2c5m_A CTP synthase; cytidine 35.2 11 0.00045 15.8 1.1 36 112-147 20-59 (294)
171 1zdr_A Dihydrofolate reductase 35.1 18 0.00074 14.4 2.7 65 340-417 52-116 (164)
172 1g6h_A High-affinity branched- 35.0 7.1 0.0003 17.0 0.2 26 113-138 31-58 (257)
173 2qi9_C Vitamin B12 import ATP- 34.6 7.4 0.00031 16.9 0.2 23 114-136 25-49 (249)
174 3e1s_A Exodeoxyribonuclease V, 34.3 9.9 0.00042 16.1 0.8 36 116-151 205-242 (574)
175 2e44_A Insulin-like growth fac 34.2 18 0.00077 14.3 3.9 60 325-386 25-85 (96)
176 2o8b_A DNA mismatch repair pro 33.8 10 0.00044 15.9 0.9 19 57-75 86-105 (934)
177 2ixe_A Antigen peptide transpo 33.7 7.9 0.00033 16.7 0.2 26 113-138 43-70 (271)
178 1x6v_B Bifunctional 3'-phospho 33.3 11 0.00048 15.7 1.0 26 445-470 500-525 (630)
179 3bk7_A ABC transporter ATP-bin 33.3 8.4 0.00035 16.5 0.3 67 390-467 473-548 (607)
180 2nq2_C Hypothetical ABC transp 33.3 8.5 0.00036 16.5 0.3 25 114-138 30-56 (253)
181 1s6y_A 6-phospho-beta-glucosid 32.9 19 0.00081 14.2 3.9 15 92-106 148-162 (450)
182 2cbz_A Multidrug resistance-as 32.8 7.9 0.00033 16.7 0.1 26 113-138 29-56 (237)
183 3oj0_A Glutr, glutamyl-tRNA re 32.3 20 0.00083 14.1 7.2 23 116-141 22-44 (144)
184 1ewq_A DNA mismatch repair pro 32.2 12 0.00052 15.5 1.0 21 56-76 78-98 (765)
185 1ru4_A Pectate lyase, PEL9A; p 32.0 20 0.00084 14.1 2.7 24 43-66 15-44 (400)
186 2h92_A Cytidylate kinase; ross 31.6 7.1 0.0003 17.0 -0.3 25 117-141 5-31 (219)
187 3ld9_A DTMP kinase, thymidylat 31.5 11 0.00045 15.8 0.6 30 112-141 17-49 (223)
188 3ke8_A 4-hydroxy-3-methylbut-2 31.2 20 0.00086 14.0 8.0 93 383-490 225-323 (326)
189 2yyu_A Orotidine 5'-phosphate 30.9 14 0.00057 15.2 1.1 34 404-437 203-236 (246)
190 3gd7_A Fusion complex of cysti 30.9 9.5 0.0004 16.2 0.3 25 114-138 46-72 (390)
191 2onk_A Molybdate/tungstate ABC 30.8 9.1 0.00038 16.3 0.2 24 116-139 25-50 (240)
192 2olj_A Amino acid ABC transpor 30.8 9.8 0.00041 16.1 0.3 25 114-138 49-75 (263)
193 2ejc_A Pantoate--beta-alanine 30.7 21 0.00088 14.0 7.2 29 45-73 25-53 (280)
194 3h74_A Pyridoxal kinase; PSI-I 30.2 21 0.00089 13.9 6.4 25 315-339 217-241 (282)
195 1q3t_A Cytidylate kinase; nucl 30.2 8.1 0.00034 16.7 -0.2 27 117-143 18-46 (236)
196 3noj_A 4-carboxy-4-hydroxy-2-o 30.1 21 0.0009 13.9 2.5 26 200-225 79-105 (238)
197 1zo1_I IF2, translation initia 30.0 21 0.0009 13.9 3.9 19 363-381 308-326 (501)
198 2ocp_A DGK, deoxyguanosine kin 29.9 12 0.00051 15.5 0.7 27 116-142 3-31 (241)
199 1v8z_A Tryptophan synthase bet 29.9 21 0.0009 13.9 2.6 30 368-397 349-379 (388)
200 2plr_A DTMP kinase, probable t 29.6 13 0.00055 15.3 0.8 27 115-141 4-32 (213)
201 1kol_A Formaldehyde dehydrogen 28.8 22 0.00094 13.8 6.3 23 365-390 279-301 (398)
202 1nmo_A Hypothetical protein YB 28.7 23 0.00095 13.7 6.9 67 1-78 1-67 (247)
203 2pt7_A CAG-ALFA; ATPase, prote 28.1 22 0.00094 13.8 1.8 10 456-465 307-316 (330)
204 1v43_A Sugar-binding transport 28.0 12 0.0005 15.6 0.3 26 114-139 36-63 (372)
205 3irm_A Bifunctional dihydrofol 27.8 23 0.00098 13.6 2.6 21 367-387 367-387 (521)
206 2nu8_B SCS-beta, succinyl-COA 27.4 24 0.001 13.6 6.4 95 358-458 285-387 (388)
207 2iyv_A Shikimate kinase, SK; t 27.3 12 0.00052 15.4 0.3 21 118-138 5-27 (184)
208 2pcj_A ABC transporter, lipopr 27.1 13 0.00056 15.3 0.5 25 114-138 29-55 (224)
209 3nh6_A ATP-binding cassette SU 26.8 10 0.00043 16.0 -0.2 49 357-417 211-262 (306)
210 1yqt_A RNAse L inhibitor; ATP- 26.8 13 0.00054 15.3 0.4 58 399-465 409-475 (538)
211 1via_A Shikimate kinase; struc 26.7 14 0.00057 15.2 0.5 22 117-138 6-29 (175)
212 2o8b_B DNA mismatch repair pro 26.3 17 0.00072 14.5 0.9 12 383-394 790-802 (1022)
213 3n2z_B Lysosomal Pro-X carboxy 26.2 25 0.001 13.5 3.5 95 32-129 26-140 (446)
214 3iij_A Coilin-interacting nucl 26.2 13 0.00054 15.3 0.3 23 116-138 12-36 (180)
215 3d31_A Sulfate/molybdate ABC t 26.0 12 0.00051 15.5 0.1 27 113-139 24-52 (348)
216 2yyz_A Sugar ABC transporter, 25.3 14 0.00057 15.2 0.3 26 114-139 28-55 (359)
217 2ioj_A Hypothetical protein AF 25.2 21 0.00086 14.0 1.2 74 369-452 41-115 (139)
218 1osn_A Thymidine kinase, VZV-T 24.9 25 0.0011 13.5 1.5 29 117-145 14-44 (341)
219 1um8_A ATP-dependent CLP prote 24.9 24 0.001 13.5 1.5 26 112-138 70-97 (376)
220 3don_A Shikimate dehydrogenase 24.8 26 0.0011 13.3 2.1 13 356-368 203-215 (277)
221 1kag_A SKI, shikimate kinase I 24.6 15 0.00064 14.9 0.4 23 116-138 5-29 (173)
222 1zuh_A Shikimate kinase; alpha 24.5 16 0.00067 14.7 0.5 24 115-138 7-32 (168)
223 2it1_A 362AA long hypothetical 24.5 15 0.00063 14.9 0.3 26 114-139 28-55 (362)
224 1lw7_A Transcriptional regulat 24.2 14 0.00058 15.2 0.1 13 404-416 271-284 (365)
225 2qag_B Septin-6, protein NEDD5 24.1 9.8 0.00041 16.1 -0.7 21 112-133 40-62 (427)
226 1qf9_A UMP/CMP kinase, protein 24.0 20 0.00086 14.0 0.9 25 113-137 4-30 (194)
227 2ccj_A DTMP kinase, thymidylat 23.9 18 0.00075 14.4 0.6 28 116-144 3-32 (205)
228 3cr8_A Sulfate adenylyltranfer 23.8 28 0.0012 13.2 2.3 90 403-496 435-537 (552)
229 1ii8_A RAD50 ABC-ATPase; MRE11 23.7 18 0.00075 14.4 0.6 24 115-138 23-48 (195)
230 2fyw_A Conserved hypothetical 23.7 28 0.0012 13.2 7.1 68 1-78 3-70 (267)
231 1tue_A Replication protein E1; 23.6 28 0.0012 13.2 3.0 42 97-138 40-83 (212)
232 3cvj_A Putative phosphoheptose 23.6 28 0.0012 13.1 4.2 14 256-269 127-140 (243)
233 3euj_A Chromosome partition pr 23.3 19 0.00079 14.3 0.7 22 116-137 30-53 (483)
234 3lxw_A GTPase IMAP family memb 23.2 8.4 0.00035 16.5 -1.1 15 118-133 27-41 (247)
235 3g3d_A UMP synthase, uridine 5 23.2 27 0.0011 13.3 1.4 27 407-433 273-299 (312)
236 3nva_A CTP synthase; rossman f 23.2 22 0.00092 13.8 1.0 21 35-55 47-70 (535)
237 2awn_A Maltose/maltodextrin im 23.1 17 0.0007 14.6 0.3 25 115-139 29-55 (381)
238 2axq_A Saccharopine dehydrogen 23.0 29 0.0012 13.1 4.2 15 367-381 358-372 (467)
239 1ylk_A Hypothetical protein RV 23.0 29 0.0012 13.1 1.6 15 34-48 44-65 (172)
240 2is6_A DNA helicase II; hydrol 22.9 8.7 0.00036 16.4 -1.1 19 92-110 57-75 (680)
241 1s1m_A CTP synthase; CTP synth 22.8 24 0.001 13.5 1.2 21 35-55 47-70 (545)
242 1oxx_K GLCV, glucose, ABC tran 22.8 15 0.00061 15.0 0.0 27 113-139 29-57 (353)
243 2jvr_A Nucleolar protein 3; RN 22.5 29 0.0012 13.0 3.6 61 325-387 38-99 (111)
244 2gza_A Type IV secretion syste 22.4 26 0.0011 13.4 1.2 22 26-51 34-55 (361)
245 2d2e_A SUFC protein; ABC-ATPas 22.4 18 0.00074 14.5 0.4 23 113-135 27-51 (250)
246 1sxj_D Activator 1 41 kDa subu 22.4 27 0.0011 13.3 1.3 42 93-138 40-83 (353)
247 2c61_A A-type ATP synthase non 22.4 29 0.0012 13.0 2.7 14 131-144 92-105 (469)
248 2czd_A Orotidine 5'-phosphate 22.2 30 0.0012 13.0 2.3 31 404-434 173-203 (208)
249 3inn_A Pantothenate synthetase 21.8 30 0.0013 12.9 7.3 27 97-125 26-52 (314)
250 1pjq_A CYSG, siroheme synthase 21.8 30 0.0013 12.9 2.2 33 44-76 74-106 (457)
251 1vco_A CTP synthetase; tetrame 21.7 27 0.0011 13.2 1.2 30 116-145 13-46 (550)
252 1z47_A CYSA, putative ABC-tran 21.6 17 0.00073 14.5 0.2 26 114-139 40-67 (355)
253 2fz4_A DNA repair protein RAD2 21.5 24 0.001 13.5 0.9 22 109-131 105-126 (237)
254 3fvq_A Fe(3+) IONS import ATP- 21.5 20 0.00083 14.1 0.5 26 114-139 29-56 (359)
255 1l2t_A Hypothetical ABC transp 21.4 18 0.00075 14.4 0.2 25 114-138 30-56 (235)
256 1vhv_A Diphthine synthase; str 21.0 31 0.0013 12.8 5.6 17 316-332 125-141 (268)
257 3h9u_A Adenosylhomocysteinase; 21.0 31 0.0013 12.8 6.7 30 91-121 123-152 (436)
258 2vaw_A FTSZ, cell division pro 20.9 31 0.0013 12.8 3.5 28 366-393 273-300 (394)
259 2bz2_A Negative elongation fac 20.5 32 0.0013 12.8 4.1 57 326-387 48-105 (121)
260 3dhw_C Methionine import ATP-b 20.5 21 0.00086 14.0 0.4 25 114-138 30-56 (343)
261 3kta_A Chromosome segregation 20.5 25 0.0011 13.4 0.8 23 115-137 26-50 (182)
262 3ek2_A Enoyl-(acyl-carrier-pro 20.4 32 0.0014 12.7 6.7 20 56-75 29-48 (271)
263 1f2t_A RAD50 ABC-ATPase; DNA d 20.3 22 0.00091 13.9 0.5 23 115-137 23-47 (149)
264 1e6c_A Shikimate kinase; phosp 20.3 20 0.00086 14.0 0.3 21 118-138 5-27 (173)
265 1sky_E F1-ATPase, F1-ATP synth 20.2 32 0.0014 12.7 3.8 16 442-457 456-471 (473)
266 1wly_A CAAR, 2-haloacrylate re 20.1 33 0.0014 12.7 4.9 105 354-464 213-330 (333)
No 1
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=745.62 Aligned_cols=469 Identities=35% Similarity=0.509 Sum_probs=412.9
Q ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 55574300245302314689889980388767688899999859889998473223334322347970999799899999
Q gi|254781102|r 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103 (497)
Q Consensus 24 ~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~ 103 (497)
...+++|++|++|||+|+||||||||+|+++|||+|+++|+++||+++|++++.+..........++|+++|+|++++|+
T Consensus 15 ~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~vv~~~~~~~~~~~~~~~~~~~~i~V~d~~~aL~ 94 (498)
T 1e8c_A 15 DAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLS 94 (498)
T ss_dssp TCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEEETTEEEEEETTHHHHHH
T ss_pred CCCCCEECCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCEEEECCHHHHHH
T ss_conf 99887379278506758999789990468888899999999879969998075334541010037985899899999999
Q ss_pred HHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999998276200--224565430652000123333321023222223454433-23554457675312211111110112
Q gi|254781102|r 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQ 180 (497)
Q Consensus 104 ~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~-~~~~~~~~TtP~~~~l~~~l~~~~~~ 180 (497)
+||++||++++. ++||||||||||||++|++++|+..+.+++..|+.++.. ........++|++..++.+|..+.+.
T Consensus 95 ~la~~~~~~~~~~~~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (498)
T 1e8c_A 95 ALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQ 174 (498)
T ss_dssp HHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999855733367189997899980006460004554375300025400134752245578787356789999998856
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 23333356676665554310432121112321545543211011223455421000000122321112542000122210
Q gi|254781102|r 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 (497)
Q Consensus 181 g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~ 260 (497)
+++++++|+||+|+.+.++..++|+++|||||++||||+|||+++|+++|.++|.. ++.+.+|+|.||++...+.+..
T Consensus 175 ~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~gs~e~~~~aK~~i~~~--~~~g~~vln~Dd~~~~~~~~~~ 252 (498)
T 1e8c_A 175 GATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKL 252 (498)
T ss_dssp TCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT--SBCCEEEEETTSHHHHHHHTTC
T ss_pred CCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHC
T ss_conf 99299990698364556407688888999489778767568836767788886530--3677289935867887777650
Q ss_pred CCCCCCCCCCCC----CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 235653222223----3332200000014544432112221001012234332221105778887752026767631112
Q gi|254781102|r 261 HNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 (497)
Q Consensus 261 ~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L 336 (497)
..........+. .........+.....+..+.+..+++.+++.++++|.||++|+++|++++..+|++++++.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~~~i~~~l 332 (498)
T 1e8c_A 253 PDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTA 332 (498)
T ss_dssp TTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHG
T ss_pred CCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 46258863145675433420000246522665201100467643688751273799999999999976221258999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
Q ss_conf 34433455210001355786023000378689999741211002344403540266546004689999998619899990
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t 416 (497)
.+|++++||||.+... ++..+++||||||+||+++++++++++++|+++|+|+||+|+..+|++|++++.+++|.+|+|
T Consensus 333 ~~~~~~~gR~e~~~~~-~~~~iidDy~~np~s~~a~l~~l~~~~~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt 411 (498)
T 1e8c_A 333 ARLQPVCGRMEVFTAP-GKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVT 411 (498)
T ss_dssp GGCCCCTTSSEEECCT-TSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEEC
T ss_pred HHCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 7458989972899938-954999942799299999999988656998899988766665215589999998559999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHH
Q ss_conf 887989898999999983479---80997898999999999658988999944688663584497886799899999984
Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 (497)
Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l 493 (497)
+|+||+|+|..|+.++.+++. ++..+.|+.||++.|.++++|||+|||+|||||+||++. +.+.||+||++|||+|
T Consensus 412 ~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~d~~eAi~~a~~~a~~gDvVLi~G~G~e~~~~~~-~~~~~f~d~~~~~~~~ 490 (498)
T 1e8c_A 412 DDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVG-NQRLDYSDRVTVARLL 490 (498)
T ss_dssp CSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEET-TEEEECCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC-CEEECCCHHHHHHHHH
T ss_conf 878787798999999985676778879968999999999984899899999478887849989-9986898699999999
Q ss_pred HHH
Q ss_conf 430
Q gi|254781102|r 494 GLI 496 (497)
Q Consensus 494 ~~~ 496 (497)
+.+
T Consensus 491 ~~~ 493 (498)
T 1e8c_A 491 GVI 493 (498)
T ss_dssp TSC
T ss_pred HHH
T ss_conf 888
No 2
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=698.11 Aligned_cols=462 Identities=34% Similarity=0.509 Sum_probs=392.1
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 55743002453023146898899803887676888999998598899984732233343223479709997998999999
Q gi|254781102|r 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 (497)
Q Consensus 25 ~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~ 104 (497)
..|++|+||++|||+|+||||||||+|+++|||+|+.+|+++||+++|++.....+ .....++|+|+|+|++++|++
T Consensus 57 ~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~~---~~~~~~~p~i~v~d~~~aL~~ 133 (535)
T 2wtz_A 57 TEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGG 133 (535)
T ss_dssp TTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHHH---HCSCCSSCEEECSSSHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC---CCCCCCCEEEEECCHHHHHHH
T ss_conf 99970668996077479998899903487898999999998699899986743100---146678609998989999999
Q ss_pred HHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99998276200--22456543065200012333332102322222345443-3235544576753122111111101122
Q gi|254781102|r 105 FASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 (497)
Q Consensus 105 la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~-~~~~~~~~~TtP~~~~l~~~l~~~~~~g 181 (497)
||+++|++|+. ++||||||||||||++|++++|+..|++++.+++.++. .+......+|||+...++..+..+.+.+
T Consensus 134 la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~e~g 213 (535)
T 2wtz_A 134 LAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERG 213 (535)
T ss_dssp HHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99998648100781999969998899999999999853974012477312303751155678854156676666665069
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 333335667666555431043212111232154554321101122345542100000-0122321112542000122210
Q gi|254781102|r 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRA 260 (497)
Q Consensus 182 ~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~-~~~~~~ViN~Dd~~~~~l~~~~ 260 (497)
..++++|+|||++.+.|++.+.|+++++|||+++|||+|+++++|+.+|.+||.... ...+.+|+|.||++...+....
T Consensus 214 ~~~~~~e~~~~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~~~~~~~~~v~n~~d~~~~~~~~~~ 293 (535)
T 2wtz_A 214 VDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293 (535)
T ss_dssp CCEEEEECCHHHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 86589971211677524333564089996562788652375676544433211002444575389925508899997630
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECC-CCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 235653222223333220000001-454443211-222100101223433222110577888775202676763111234
Q gi|254781102|r 261 HNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 (497)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~i-~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~ 338 (497)
..... ..+.............. ...+..+.+ ...+..+++.++++|.||++|+++|++++..+|++++.+.++|.+
T Consensus 294 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~ 371 (535)
T 2wtz_A 294 ADAIT--VSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLRE 371 (535)
T ss_dssp SSCEE--EESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCCE--EECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 34411--2214663002333202223576112203554310244322567215777999999998749999999999986
Q ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCC
Q ss_conf 43345521000135578602300037868999974121100234440354026654600468999999861989999088
Q gi|254781102|r 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 (497)
Q Consensus 339 f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d 418 (497)
|++ |||+|.+... .+..+++||||||+++.+++.+++. ..+|+++|||++||||..+|++|++++.+++|.+|+|.|
T Consensus 372 ~~~-~gR~e~i~~~-~~~~i~~dya~np~~~~~~l~~~~~-~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~ 448 (535)
T 2wtz_A 372 IRV-PGRLEQIDRG-QGFLALVDYAHKPEALRSVLTTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDD 448 (535)
T ss_dssp CCC-TTSSEECCSS-CSSEEEEECCCSHHHHHHHHHTTCC-SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCS
T ss_pred CCC-CCCEEEEEEC-CCCEEEEECCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 998-6738999851-8968999679996999999999764-159967997877887577899999999962999999987
Q ss_pred CCCCCCHHHHHHHHHHCCC------CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHH
Q ss_conf 7989898999999983479------8099789899999999965898899994468866358449788679989999998
Q gi|254781102|r 419 NPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 (497)
Q Consensus 419 ~~r~e~~~~I~~~i~~g~~------~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~ 492 (497)
|||+|+|..|.++++++.. ++..++|+.+|++.|+++++|||+|||+|||||++|++. +++.||+||+++++.
T Consensus 449 ~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDvVLv~G~Ghe~~q~~~-~~~~~f~dr~~~~~a 527 (535)
T 2wtz_A 449 NPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGG-GRVRPFDDRVELAAA 527 (535)
T ss_dssp CCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC--CEECCCTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEC-CEEECCCHHHHHHHH
T ss_conf 7675798999999998789747998889959999999999983899999998378888762489-998348479999999
Q ss_pred HHH
Q ss_conf 443
Q gi|254781102|r 493 LGL 495 (497)
Q Consensus 493 l~~ 495 (497)
|.=
T Consensus 528 l~~ 530 (535)
T 2wtz_A 528 LEA 530 (535)
T ss_dssp HHS
T ss_pred HHH
T ss_conf 999
No 3
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=607.34 Aligned_cols=420 Identities=22% Similarity=0.302 Sum_probs=350.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 78988732033556555743002453023146898899803887676888999998598899984732233343223479
Q gi|254781102|r 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~ 89 (497)
.+.+++++ .+...|+.|++|++|||+|+||++|||++|.++|||+|+++|+++||+++|++++.+ .+
T Consensus 8 ~l~~~l~~----~l~~~d~~i~~is~DSr~v~~g~lFval~G~~~dG~~fi~~A~~~GA~~ii~~~~~~---------~~ 74 (452)
T 1gg4_A 8 QLTDILNG----ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLD---------ID 74 (452)
T ss_dssp HHHHHTTE----EEESCCCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCCS---------CS
T ss_pred HHHHHHCC----EEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC---------CC
T ss_conf 99997699----987898257279954780799978999357877889999999986995999868767---------99
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 70999799899999999998276200224565430652000123333321023222223454433235544576753122
Q gi|254781102|r 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 (497)
Q Consensus 90 ~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~ 169 (497)
+|+|+|+|++.+|++||+++|.+++.++||||||||||||++|++++|+..|...+..|+.++. .+ .+..
T Consensus 75 ~p~i~v~d~~~al~~la~~~~~~~~~~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~~~~~---ig-------~~~~ 144 (452)
T 1gg4_A 75 LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND---IG-------VPMT 144 (452)
T ss_dssp SCEEEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCST---TH-------HHHH
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC---CC-------CHHH
T ss_conf 9999989889999999999870799246999713674044567887777652143023577887---37-------5466
Q ss_pred HHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1111111011223333356676--66555431043212111232154554321101122345542100000012232111
Q gi|254781102|r 170 LAKALSYLSSQGVTHVSVEASS--HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 (497)
Q Consensus 170 l~~~l~~~~~~g~~~~vlEvSS--~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN 247 (497)
+.. ...+.+++|+|+|| +|..+.|+..++|+++|||||++||||+|+|+|+|+++|.+||+. .++.+.+|+|
T Consensus 145 ~~~-----~~~~~~~~v~E~~~~~~~~~~~~~~~~~pdiaviTNI~~dHld~~~s~e~y~~aK~~lf~~-l~~~~~~i~n 218 (452)
T 1gg4_A 145 LLR-----LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMN 218 (452)
T ss_dssp HTT-----CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGG-CCTTCEEEEE
T ss_pred HHH-----CCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCC
T ss_conf 643-----0255572899952886606776624568878999544055415656289999999999854-4425763236
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 25420001222102356532222233332200000014544432112221001012234332221105778887752026
Q gi|254781102|r 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 (497)
Q Consensus 248 ~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi 327 (497)
.||+.+..+.+.........++++.+..+++.........+..|.+..+++.+++.++++|+||++|+++|++++..+|+
T Consensus 219 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~~~~~~~~l~G~hnv~NalaAia~~~~lg~ 298 (452)
T 1gg4_A 219 ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGA 298 (452)
T ss_dssp TTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 78768889988750466315446665775677743770797189999546148999725773211408999866655499
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECC---CCCCCCHHHHHH
Q ss_conf 7676311123443345521000135578602300-037868999974121100234440354026---654600468999
Q gi|254781102|r 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403 (497)
Q Consensus 328 ~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~---Gdrd~~kr~~mg 403 (497)
+++++.++|.+|+++|||+|.+... ++..+|+| |||||+||+++|+++++++++ +++|+|.+ |+|+..+|+.||
T Consensus 299 ~~~~i~~~l~~~~~v~~R~~~~~~~-~~~~~idD~y~~np~s~~a~l~~l~~~~~~-ki~i~g~~~elG~~~~~~~~~i~ 376 (452)
T 1gg4_A 299 TLDAIKAGLANLKAVPGRLFPIQLA-ENQLLLDDSYNANVGSMTAAVQVLAEMPGY-RVLVVGDMAELGAESEACHVQVG 376 (452)
T ss_dssp CHHHHHHHHTTCCCCTTSSEEEEEE-TTEEEEECCSCCCHHHHHHHHHHHHHSSSE-EEEEECCCCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCHHEEEEEC-CCCEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999987445998311589842-895799824768979999999999866898-39999976878864799999999
Q ss_pred HHHHHH-CCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 999861-989999088798989899999998347980997898999999999658988999944688
Q gi|254781102|r 404 KIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 404 ~~a~~~-ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~ 469 (497)
+.+.+. .|.||++.+ +++.|.. ...+.....||.+|++.+.+.+++||+++|++||-
T Consensus 377 ~~~~~~~~d~vi~~G~-----~~~~i~~----~~~~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGS 434 (452)
T 1gg4_A 377 EAAKAAGIDRVLSVGK-----QSHAIST----ASGVGEHFADKTALITRLKLLIAEQQVITILVKGS 434 (452)
T ss_dssp HHHHHHTCSEEEEESS-----STHHHHH----HTTSCEEESSHHHHHHHHHHHHHHCSSEEEEEECC
T ss_pred HHHHHCCCCEEEEECC-----CHHHHHH----HCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 9998579999999782-----8899986----47887063899999999998533699569999141
No 4
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00 E-value=0 Score=583.44 Aligned_cols=422 Identities=19% Similarity=0.315 Sum_probs=321.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 97678786678988732033556555743002453023146898899803887676888999998598899984732233
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~ 80 (497)
|||+ ...+.++++.-... ....|++|++|++|||+|+||++|||+||++ |||+||++|+++||+++|++++++
T Consensus 1 m~~~---l~~i~~~~~~~~~~-~~~~d~~i~~i~~dSr~v~~g~lFva~kG~~-dG~~yi~~A~~~GA~~vv~~~~~~-- 73 (454)
T 2am1_A 1 MKLT---IHEIAQVVGAKNDI-SIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEVS-- 73 (454)
T ss_dssp CCCB---HHHHHHHHTCSSCS-TTSCCCBCCCEESCGGGCCTTCEECCCBSSS-BGGGGHHHHHHHTCSEEEESSCCC--
T ss_pred CCCC---HHHHHHHHCCCCCC-CCCCCCEECEEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCCCC--
T ss_conf 9562---99999986886667-7677831665995087279998899947884-079999999987998999887478--
Q ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34322347970999799899999999998276200224565430652000123333321023222223454433235544
Q gi|254781102|r 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 (497)
Q Consensus 81 ~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~ 160 (497)
++|+|+|+|+++||+.||+++|+.++.++||||||||||||++|++++|+..|.++..+|+.++..+
T Consensus 74 --------~~p~i~V~d~~~al~~la~~~~~~~~~~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~gn~~~~~g----- 140 (454)
T 2am1_A 74 --------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG----- 140 (454)
T ss_dssp --------SSCEEECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH-----
T ss_pred --------CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCCC-----
T ss_conf --------9999998989999999999997088985899942588773202789987761673331687687767-----
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 57675312211111110112233333566766--6555431043212111232154554321101122345542100000
Q gi|254781102|r 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 (497)
Q Consensus 161 ~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~--gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~ 238 (497)
. +..+. . ...+.+++++|++|+ |..+.+...++|+++|||||++||||+|+|+|+|+++|++||+..
T Consensus 141 ---~--~~~~~----~-~~~~~~~~v~E~~~~~~~~~~~l~~~~~p~iaviTNI~~dHld~~~s~e~y~~~K~~lf~~~- 209 (454)
T 2am1_A 141 ---L--PYTVL----H-MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM- 209 (454)
T ss_dssp ---H--HHHHH----T-CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTC-
T ss_pred ---C--HHHHH----H-CCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_conf ---3--78887----3-42210367888603542137887256799689990886676554100689999888887346-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
Q ss_conf 01223211125420001222102356532222233332200000014544432112221001012234332221105778
Q gi|254781102|r 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 (497)
Q Consensus 239 ~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaA 318 (497)
++.+.++ +.||+........ .....+++. ..+....... .....+.+...+..+.++++++|.||++|+++|
T Consensus 210 ~~~~~vi-~~dd~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~nv~N~laA 281 (454)
T 2am1_A 210 ASGSLLL-APADPIVEDYLPI----DKKVVRFGQ-GAELEITDLV--ERKDSLTFKANFLEQALDLPVTGKYNATNAMIA 281 (454)
T ss_dssp CTTCEEE-EESCGGGGGGCCS----SSEEEEEST-TSSBCEEEEE--ECSSCEEEEETTCSSEEEESSCCHHHHHHHHHH
T ss_pred CCCCCEE-CCCCHHHHHHHHH----CCCCCCCCC-CCCEEHHHHH--HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7545220-2677899998753----023320045-6420013322--034554212454323433355667899999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC---CCCCCEEEECC---
Q ss_conf 8877520267676311123443345521000135578602300-0378689999741211002---34440354026---
Q gi|254781102|r 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG--- 391 (497)
Q Consensus 319 ia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~---~~r~i~V~G~~--- 391 (497)
++++..+|++++.+.++|.+|++++||||.+.. .++.++|+| |||||+||+++|+++++++ .+|+|+|||.|
T Consensus 282 ia~~~~lg~~~~~i~~~l~~~~~~~~R~e~~~~-~~~~~iidDsya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~ 360 (454)
T 2am1_A 282 SYVALQEGVSEEQIRLAFQHLELTRNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKEL 360 (454)
T ss_dssp HHHHHHTTCCHHHHHHHGGGCCCCCCCSCEECC-TTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCC
T ss_pred HHHHHHHCCCHHHEEECCCCCCCCCCCCEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHC
T ss_conf 999987335312212001245665530016873-7992686562369999999999999863320378669997862001
Q ss_pred -CCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC--------CEEEECCHHHHHHHHHHHCCCCCEE
Q ss_conf -6546004689999998619899990887989898999999983479--------8099789899999999965898899
Q gi|254781102|r 392 -GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVL 462 (497)
Q Consensus 392 -Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~--------~~~~~~dr~eAi~~A~~~a~~gDvi 462 (497)
++++..+|+.+++++...+|.+|+|.+++ ..+...+...++ +....+++.+|++.+.+.+++||+|
T Consensus 361 G~~~~~~h~~i~~~ia~~~~d~vi~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~gDvV 435 (454)
T 2am1_A 361 GDQSVQLHNQMILSLSPDVLDIVIFYGEDI-----AQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQI 435 (454)
T ss_dssp CTTHHHHHHHGGGGCCTTTCSEEEEEESTT-----HHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCH-----HHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 535899999999999982998999979888-----999999986224354114553021278999999999637999989
Q ss_pred EEECCCC
Q ss_conf 9944688
Q gi|254781102|r 463 VVAGKGH 469 (497)
Q Consensus 463 li~GkG~ 469 (497)
|+ ||-
T Consensus 436 Li--KGS 440 (454)
T 2am1_A 436 LL--KGS 440 (454)
T ss_dssp EE--ESS
T ss_pred EE--EEC
T ss_conf 99--837
No 5
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=0 Score=458.15 Aligned_cols=353 Identities=15% Similarity=0.150 Sum_probs=262.1
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCC-CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 002245654306520001233333210232222-234544332355-44576753122111111101122333335667-
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS- 190 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~-~g~~~~~~~~~~-~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvS- 190 (497)
..++||||||||||||+.|++++|+.+|++++. +|.......... ....++|.+.........+...+.+|+|+|+|
T Consensus 121 ~~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~e 200 (524)
T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADE 200 (524)
T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 58289997888825389999999997299862997570345776643356778733430134455402468879999844
Q ss_pred ---HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC-----
Q ss_conf ---666555431043212111232154554321101122345542100000012232111254200012221023-----
Q gi|254781102|r 191 ---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN----- 262 (497)
Q Consensus 191 ---S~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~----- 262 (497)
||++.+.|...++|+++|||||++||||||+|+|+|+++|.++|+. .++++.+|+|.||+.......+...
T Consensus 201 ~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~s~e~~~~ak~~i~~~-~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~ 279 (524)
T 3hn7_A 201 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQFHHMVRM-IPSTGKIIMPAATISLEDTLAKGVWTPIWR 279 (524)
T ss_dssp CCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHHHHHHHHHTT-SCTTSEEEEESSCHHHHHHHHTCCCSCEEE
T ss_pred CCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 4301455200014446768999747786732333035556677778742-887885475340456999999876431034
Q ss_pred -------------CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf -------------56532222233-3322000000145444321122210---010122343322211057788877520
Q gi|254781102|r 263 -------------AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAI 325 (497)
Q Consensus 263 -------------~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~l~l~G~hni~NalaAia~a~~l 325 (497)
...++.+++.. ..++....+... +..|++...+. ...++++++|.||++|+++|++++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~--~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l 357 (524)
T 3hn7_A 280 TSVIDSTISSVRREDSPLENSQAENSSDWQAELISAD--GSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI 357 (524)
T ss_dssp EEEEC-------------------CCCSEEEEEEETT--TTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT
T ss_pred CCEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEEC--CCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 3111101111113465302203554654999999854--87135643115640478983577719999999999999971
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCC-CCCCHHHHHH
Q ss_conf 2676763111234433455210001355786023000378689999741211002-3444035402665-4600468999
Q gi|254781102|r 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGD-RDQGKRPIMG 403 (497)
Q Consensus 326 Gi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gd-rd~~kr~~mg 403 (497)
|++++.|.++|++|++++||||++.. .++..+++||||||++++++|++++++. .+|+|+||+.++. |..+....+.
T Consensus 358 Gi~~~~i~~~L~~f~g~~~R~e~i~~-~~~~~viDDYahnP~si~a~l~al~~~~~~~rii~v~~~~~~s~~~~~~~~~~ 436 (524)
T 3hn7_A 358 GVSVKTACAALSAFAGIKRRMELIGD-VNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSL 436 (524)
T ss_dssp TCCHHHHHHHHHTCCCBTTSSEEEEE-ETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCCTTHH
T ss_pred CCCHHEEEECCCCCCCCHHHHEEEEE-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 99604022200046773324035640-47815997347998999999999997669985999988899842134668999
Q ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 9998619899990887989898999999983---479809978989999999996589889999446886
Q gi|254781102|r 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 404 ~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~---g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
..+...+|.+++|.++++.|.|..+.+.... ...+...+.|++||++.+.++|+|||+||++|||.-
T Consensus 437 ~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eai~~~~~~a~~gDiVLi~G~G~~ 506 (524)
T 3hn7_A 437 AQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGF 506 (524)
T ss_dssp HHHTTTSSEEEEECCTTCCCSHHHHHHHHHHHCGGGCCEEEESCHHHHHHHHHHHCCTTCEEEEEESSCG
T ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 9999749999997888766487878879987434578849989999999999985799899999879976
No 6
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=0 Score=440.39 Aligned_cols=411 Identities=16% Similarity=0.221 Sum_probs=295.1
Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEC----CHHHHHHHH-
Q ss_conf 024530231468988998038876768889999985988999847322333432234797099979----989999999-
Q gi|254781102|r 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD----NTRKFLSLF- 105 (497)
Q Consensus 31 ~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~----d~~~aL~~l- 105 (497)
+|.+...-..++|..|++..|..+|+|.|++.+.++|+.+++...+.+. ...+.+++++. +....+...
T Consensus 20 sG~s~a~~l~~~G~~v~~~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~------~~~~~~~vv~Sp~I~~~~p~l~~a~ 93 (451)
T 3lk7_A 20 SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL------LDEDFCYMIKNPGIPYNNPMVKKAL 93 (451)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGG------GGSCEEEEEECTTSCTTSHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHC------CCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 9999999999788979999798788997899999789989968897881------7799859998997499999999999
Q ss_pred ---------HHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---------99982762002245654306520001233333210232222234544332355445767531221111111
Q gi|254781102|r 106 ---------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 (497)
Q Consensus 106 ---------a~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~ 176 (497)
+..++.....++||||||||||||++|++++|+..|.++...|+.+..... + .
T Consensus 94 ~~~i~~~~~~~l~~~~~~~~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~~~~~~~~-------------~-----~ 155 (451)
T 3lk7_A 94 EKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASE-------------V-----V 155 (451)
T ss_dssp HTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCHHH-------------H-----T
T ss_pred HCCCCEEEHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHH-------------H-----H
T ss_conf 779979609999998740868999777786218999999986433441230466767054-------------4-----2
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 01122333335667666555431043212111232154554321101122345542100000012232111254200012
Q gi|254781102|r 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 (497)
Q Consensus 177 ~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l 256 (497)
....+.+++|+|+||+.+ +++..++|+++|||||++||||||+|+|+|+++|.+||.. .+..+.+|+|.||++.+.+
T Consensus 156 ~~~~~~~~~v~E~s~~~~--~~~~~~~p~iaviTNI~~dHld~~~s~e~y~~aK~~l~~~-~~~~~~~v~n~dd~~~~~l 232 (451)
T 3lk7_A 156 QAANDKDTLVMELSSFQL--MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQ-MSSSDFLVLNFNQGISKEL 232 (451)
T ss_dssp TTCCTTCEEEEECCHHHH--TTCSSCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTT-CCTTSEEEEETTSHHHHHH
T ss_pred HCCCCCCEEEEEECCCCC--CCCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
T ss_conf 135898789999433210--4554459869985071777637206988987775534314-6665653334675899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 22102356532222233332200000014544432112221001012234332221105778887752026767631112
Q gi|254781102|r 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 (497)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L 336 (497)
... ...++++|+........ .. .. ..+...........+++++|.||++|+++|++++..+|++++++.++|
T Consensus 233 ~~~---~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~lGi~~~~i~~~L 304 (451)
T 3lk7_A 233 AKT---TKATIVPFSTTEKVDGA-YV--QD--KQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETL 304 (451)
T ss_dssp HTT---CSSEEEEEESSSCCSSE-EE--ET--TEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHH---CCCCEEEECCCCCCCCC-EE--EC--EEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 874---17738984476455632-43--03--089975713676522477644456608999999998699999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEE
Q ss_conf 3443345521000135578602300-037868999974121100234440354026654600468999999861989999
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~ 415 (497)
.+|+++|||||++.. .++.++|+| |++||.++.++|+++ ..+++++++| |.+|+.. ++.|++.+...++.+++
T Consensus 305 ~~f~~~~gR~e~i~~-~~g~~iidD~~~~~~~s~~~al~~~---~~~~ii~i~g-g~~~~~~-~~~l~~~~~~~~~~ii~ 378 (451)
T 3lk7_A 305 SNFGGVKHRLQSLGK-VHGISFYNDSKSTNILATQKALSGF---DNTKVILIAG-GLDRGNE-FDELIPDITGLKHMVVL 378 (451)
T ss_dssp HHCCCCTTSSEEEEE-ETTEEEEECTTCCSHHHHHHHHHTS---CGGGEEEEEC-CSCCSCC-CGGGHHHHTTCSEEEEC
T ss_pred HHCCCCHHHHEEEEC-CCCEEEEECCCCHHHHHHHHHHHHC---CCCCEEEECC-CCCCCCC-HHHHHHHHHCCCEEEEE
T ss_conf 856665013157741-3886999567741699999999747---7887289807-8556665-99999998669889997
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC-----CCCCEEECCCEECCCCHHHHHH
Q ss_conf 08879898989999999834798099789899999999965898899994468-----8663584497886799899999
Q gi|254781102|r 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HETVHIVTNGEKKMSVDCDIIR 490 (497)
Q Consensus 416 t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG-----~e~~~~~~~~~~~~~~d~~~~~ 490 (497)
+. +...|.+.+.....++..+.||+|||+.|.+++++||+||+.|.| +++||+.++ . | .+.|+
T Consensus 379 g~------~~~~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~~~gDiVLls~a~aSfD~f~nye~RG~---~-F--~~~v~ 446 (451)
T 3lk7_A 379 GE------SASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGD---E-F--IDTFE 446 (451)
T ss_dssp ST------THHHHHHHHHHTTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHH---H-H--HHHHH
T ss_pred CC------CHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCHHHHHH---H-H--HHHHH
T ss_conf 99------98999999986699689749999999999985899799997795504212249999999---9-9--99999
Q ss_pred HHHH
Q ss_conf 9844
Q gi|254781102|r 491 EILG 494 (497)
Q Consensus 491 ~~l~ 494 (497)
++.+
T Consensus 447 ~l~~ 450 (451)
T 3lk7_A 447 SLRG 450 (451)
T ss_dssp HHHC
T ss_pred HHCC
T ss_conf 8528
No 7
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=427.26 Aligned_cols=393 Identities=18% Similarity=0.169 Sum_probs=255.1
Q ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 30231468988998038876768889999985988999847322333432234797099979989999999999827620
Q gi|254781102|r 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 (497)
Q Consensus 35 ~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~ 114 (497)
.++..+..-|++|-=+|-. ..|..+..|.++| +|++- -.+.+.+ ++....
T Consensus 64 ~~~~~~~~~d~vV~SpgI~-~~~p~l~~a~~~g----------------------i~v~~---~~e~~~~----~~~~~~ 113 (469)
T 1j6u_A 64 HSADNWYDPDLVIKTPAVR-DDNPEIVRARMER----------------------VPIEN---RLHYFRD----TLKREK 113 (469)
T ss_dssp CCTTSCCCCSEEEECTTCC-TTCHHHHHHHHTT----------------------CCEEE---HHHHHHH----HHHHHC
T ss_pred CCHHHCCCCCEEEECCCCC-CCCHHHHHHHHCC----------------------CCEEE---HHHHHHH----HHHHCC
T ss_conf 8978879998999889689-8889999999859----------------------96871---9999998----776466
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||++|++++|+..|..+..+++.+.. . +.. .......+++|+|+||+.
T Consensus 114 ~~~IaITGTnGKTTTt~ml~~iL~~~g~~~~~~~~~~~~--~-----------~~~-----~~~~~~~~~~V~E~~~~~- 174 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD--S-----------LEH-----GNYEKGNGPVVYELDESE- 174 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT--T-----------STT-----SSEECCSSCEEEEECTTS-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC--C-----------CCC-----HHCCCCCCEEEEECCCCC-
T ss_conf 767999689961469999999860545454120376556--4-----------210-----000369960799644321-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 554310432121112321545543211-0112234554210000001223211125420001222102356532222233
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
.+...++|+++|||||++||||+|+ +++.|...|..++. .....+.|.||+..+.+.+...........+
T Consensus 175 --~~~~~~~p~iavitNI~~DHld~~~~~~~~~~~~~~~i~~----~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~--- 245 (469)
T 1j6u_A 175 --EFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISR----NTDLVVTFAEDELTSHLGDVTFGVKKGTYTL--- 245 (469)
T ss_dssp --GGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH----TCSEEEEETTCTTTGGGCSEEECSSSSSEEE---
T ss_pred --CCCCEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCEEEECCHHHHHHHHHCCCCCCCCCCCC---
T ss_conf --2110006888998067365324424226889999998751----6881154122055655543022222343111---
Q ss_pred CCCCCCCEECCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 332200000014544432112-2210010122343322211057788877520267676311123443345521000135
Q gi|254781102|r 274 GKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 (497)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~ 352 (497)
...........+.+. .......+.++++|.||++|+++|+++|..+|++++.+.++|.+|++++||||.+...
T Consensus 246 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi~~~~i~~~l~~f~gv~~R~e~v~~~ 319 (469)
T 1j6u_A 246 ------EMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD 319 (469)
T ss_dssp ------EEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE
T ss_pred ------CCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf ------22112234540477505862025577201388898899999999982999999998875047878844799862
Q ss_pred C-CCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH---
Q ss_conf 5-78602300037868999974121100234-440354026654600468999999861989999088798989899---
Q gi|254781102|r 353 S-RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--- 427 (497)
Q Consensus 353 ~-~~~~viiDyahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~--- 427 (497)
+ .+++|++||||||++++++|++++++.++ ++++||+++++++..++..+...+.+++|.||+|+++||+|+|..
T Consensus 320 ~~~~i~vidDYAHnP~ai~a~l~~l~~~~~~~~ii~vf~~~~~~r~~~~~~~~~~a~~~aD~vilt~~~~~~E~~~~~~~ 399 (469)
T 1j6u_A 320 PETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGIS 399 (469)
T ss_dssp TTTTEEEEEECCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--------CHHHHHHTTSSEEEECCCBC---------C
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 88883466404689899999999999765898289999798886467778999999970999999998899887545878
Q ss_pred ---HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHHH
Q ss_conf ---9999983479809978989999999996589889999446886635844978867998999999844
Q gi|254781102|r 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 (497)
Q Consensus 428 ---I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~ 494 (497)
|.+.+.....+...+++ .+++..+++ +++||+||++|||+...+.-. ....+...+...+++||
T Consensus 400 ~~~i~~~l~~~~~~~~~~~~-~~~i~~~l~-~~~gDiVL~~GaGdi~~~~~~-~~e~~~~~~~~~~~~~~ 466 (469)
T 1j6u_A 400 GKMIWDSLKSLGKEAYFVEK-LPELEKVIS-VSENTVFLFVGAGDIIYSSRR-FVERYQSSKSSPSRVLG 466 (469)
T ss_dssp HHHHHHHHHHTTCCEEECCS-GGGHHHHCC-CCSSEEEEEECSSTHHHHHHH-HHHHHHHHC--------
T ss_pred HHHHHHHHHHCCCCEEECCC-HHHHHHHHH-CCCCCEEEEECCCCHHHHHHH-HHHHHHHHHCCHHHHCC
T ss_conf 99999999846998598099-999999985-799799999569998999999-99999975187345306
No 8
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=0 Score=412.05 Aligned_cols=346 Identities=19% Similarity=0.200 Sum_probs=260.1
Q ss_pred HCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC--------CCC-CC--------------------
Q ss_conf 276200--22456543065200012333332102322222345443--------323-55--------------------
Q gi|254781102|r 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--------SSF-AQ-------------------- 158 (497)
Q Consensus 110 ~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~--------~~~-~~-------------------- 158 (497)
.++|+. ++|+||||||||||+.|++++|+++|++++.+.++... ++. ..
T Consensus 57 lg~P~~~~~vI~VtGTNGKtSt~~~l~~iL~~~G~~vG~~tSPhl~~~~Eri~i~g~~I~~~~~~~~~~~i~~~~~~~~~ 136 (487)
T 2vos_A 57 LGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQ 136 (487)
T ss_dssp TTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECCHHHHHHHHHHHHHHHHHHHH
T ss_conf 49927619979998880189999999999997799868967877384245999999983899999999999899876445
Q ss_pred --------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHH
Q ss_conf --------445767531221111111011223333356676665554310432121112321545543211-01122345
Q gi|254781102|r 159 --------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNA 229 (497)
Q Consensus 159 --------~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~a 229 (497)
.....|+..+.....+..+.+.+++++++|++..| .+.++..++|+++|||||++||+|||| |+++|+.+
T Consensus 137 ~~~~~~~~~~~~~t~fe~~t~~a~~~~~~~~~d~~v~E~glgg-~~datn~~~~~vavITnI~~DH~d~lG~t~e~ia~e 215 (487)
T 2vos_A 137 QSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGG-RWDATNVINAPVAVITPISIDHVDYLGADIAGIAGE 215 (487)
T ss_dssp HHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS-TTSTTCSSCCSEEEECCCCCCBCSCSSCCHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHH
T ss_conf 5432114699988778999999999987503168888420465-304210345564787167765222336689999999
Q ss_pred HHHHHHHCC--CCCCCCCCCCCCCCHHHHH-HHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCE-EECCCC
Q ss_conf 542100000--0122321112542000122-210235653222223333220000001454443211222100-101223
Q gi|254781102|r 230 KMRLFEELL--PKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305 (497)
Q Consensus 230 K~~If~~~~--~~~~~~ViN~Dd~~~~~l~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~ 305 (497)
|+.||.... .++..+|++.+++....+. ..+...+...+.. ..+...........+..+.+...+.. ..+.+|
T Consensus 216 KagIi~~~~~~~p~~~~v~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (487)
T 2vos_A 216 KAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVARE---DSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLP 292 (487)
T ss_dssp HHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEB---TTTBEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEC---CCCCCEEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf 87677633357997259943542789999999997459626621---554100121002577237883488740244468
Q ss_pred CCCCCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 43322211057788877520-------26767631112344334552100013557860230003786899997412110
Q gi|254781102|r 306 LPGEFQVYNALVAAGLCIAI-------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 (497)
Q Consensus 306 l~G~hni~NalaAia~a~~l-------Gi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~ 378 (497)
|+|.||++|+++|++++..+ +++.+.+.++|.++++ |||||++. ++..|++||||||+|++++++++++
T Consensus 293 L~G~h~~~Na~~Aia~~~~l~~~~~~~~i~~~~i~~gL~~~~~-pGR~e~i~---~~~~viiD~AHNp~a~~~ll~~l~~ 368 (487)
T 2vos_A 293 LHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTS-PGRLERMR---SAPTVFIDAAHNPAGASALAQTLAH 368 (487)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCCC-TTSSEEEE---TTTEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC-CCCCEECC---CCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 7526689889999999999975234333568999998764147-88643025---7976999458798999999998998
Q ss_pred CC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC-CCCCCCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHH
Q ss_conf 02-3444035402665460046899999986198999908-8798989899999998347--980997898999999999
Q gi|254781102|r 379 IT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIE 454 (497)
Q Consensus 379 ~~-~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~-d~~r~e~~~~I~~~i~~g~--~~~~~~~dr~eAi~~A~~ 454 (497)
.. .+|+++||||+||||.. .|.+.+++++|.+|+|. |+||+++|+.|+..+.... .++...+|+.+|++.|++
T Consensus 369 ~~~~~~ii~V~G~~~dKD~~---~~l~~l~~~~d~viit~~~~pR~~~~~~l~~~~~~~~~~~~v~~~~~~~eAi~~A~~ 445 (487)
T 2vos_A 369 EFDFRFLVGVLSVLGDKDVD---GILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATS 445 (487)
T ss_dssp SCCCSEEEEEECCBTTBCHH---HHHHHHTTTCSEEEECCCSCTTBCCHHHHHHHHHHHHCGGGEEECSSHHHHHHHHHH
T ss_pred HCCCCCEEEEEECCCCCCHH---HHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
T ss_conf 65899789999606995999---999998854899999689996779999999999863787647991899999999999
Q ss_pred HC-------------CCCCEEEEEC
Q ss_conf 65-------------8988999944
Q gi|254781102|r 455 ML-------------NKQDVLVVAG 466 (497)
Q Consensus 455 ~a-------------~~gDvili~G 466 (497)
++ .++|+|||+|
T Consensus 446 ~a~~~~~~~~~~~~~~~~d~IlV~G 470 (487)
T 2vos_A 446 LVDDAAADPDVAGDAFSRTGIVITG 470 (487)
T ss_dssp HHHHHHTCTTTTC----CEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 7655332234554147998599975
No 9
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=0 Score=413.19 Aligned_cols=340 Identities=19% Similarity=0.292 Sum_probs=248.7
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||+.|++++|+.+|..+..++. .+...... .......+++|+|+||+.+
T Consensus 119 ~~~iaVTGTnGKTTtt~ml~~iL~~~g~~~~~~~g--~~~~~~~~----------------~~~~~~~~~~V~E~s~~~~ 180 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNG--GLVKAAGV----------------HARLGHGRYLIAEADESDA 180 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEE--EEETTTTE----------------EEECCSSSEEEEECCCTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC--CCCCCHHH----------------HHCCCCCCEEEEEECCCCC
T ss_conf 72799945678232999999999975999379971--64450244----------------2025899889999766401
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5543104321211123215455432-110112234554210000001223211125420001222102356532222233
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~-~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
. ...++|+++|||||++||||+ |+|+|+|+++|.+||++ .++++.+|+|.||+..+.+.+. ...++++||..
T Consensus 181 ~---~~~~~p~iavitNi~~DHld~~~~~~e~y~~~k~~i~~~-~~~~~~~i~n~dd~~~~~~~~~---~~~~v~tfg~~ 253 (491)
T 2f00_A 181 S---FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHN-LPFYGRAVMCVDDPVIRELLPR---VGRQTTTYGFS 253 (491)
T ss_dssp G---GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTT-SCTTCEEEEETTSHHHHHHGGG---CCSEEEEEESS
T ss_pred C---HHCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---CCCCEEEEECC
T ss_conf 3---011489899997786677512068899999999999966-9958889997988899999875---48863786001
Q ss_pred C-CCCCCCEECCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3-3220000001454443211-2221001012234332221105778887752026767631112344334552100013
Q gi|254781102|r 274 G-KFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 (497)
Q Consensus 274 ~-~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~ 351 (497)
. .++....+.....+..+.. ........+.++++|.||++|+++|++++..+|++.+.+.++|.+|++++||+|.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~g~~~R~E~vg~ 333 (491)
T 2f00_A 254 EDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGE 333 (491)
T ss_dssp TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCBTTSSEEEEE
T ss_pred CCCCEECCCHHHCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 11110012211125665201101234331221035672015349999999998599578877665404788741489987
Q ss_pred C-------CCCCE-EEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCCHH---HHHHHHHHHHCCEEEECCCC
Q ss_conf 5-------57860-23000378689999741211002-3444035402665460046---89999998619899990887
Q gi|254781102|r 352 N-------SRGGR-IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDN 419 (497)
Q Consensus 352 ~-------~~~~~-viiDyahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~~kr---~~mg~~a~~~ad~vi~t~d~ 419 (497)
. .++.. +++||||||+|++++|++++... .+|+++++| ++++...+ ..+++. ...+|.++++.+.
T Consensus 334 ~~~~~~~~~~~~~~i~DdyahnP~si~a~l~al~~~~~~~~ii~i~~--~~~~~~~~~~~~e~~~~-l~~aD~vil~~i~ 410 (491)
T 2f00_A 334 FPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQ--PHRFTRTRDLYDDFANV-LTQVDTLLMLEVY 410 (491)
T ss_dssp EESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCCSSEEEEEEC--CBCHHHHTTTHHHHHHH-HTTSSEEEECCCB
T ss_pred EEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCCHHHHHHHHHHH-HHHCCEEEECCCC
T ss_conf 42123423789789998467895899999999996589976999976--77872479999999999-9869999996666
Q ss_pred CCCCCH------HHHHHHHHH-CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC-----CCCEEECCCEECC
Q ss_conf 989898------999999983-47980997898999999999658988999944688-----6635844978867
Q gi|254781102|r 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-----ETVHIVTNGEKKM 482 (497)
Q Consensus 420 ~r~e~~------~~I~~~i~~-g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~-----e~~~~~~~~~~~~ 482 (497)
|++|.| +.|++.+.. +-.++..++|+++|++.+.+.++|||+||+.|.|+ +.+.++....+.+
T Consensus 411 ~a~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~Gsg~i~~~~~~l~e~~~k~~~~ 485 (491)
T 2f00_A 411 PAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTP 485 (491)
T ss_dssp CSSSCCCTTSSHHHHTTC-------CCEECCCSSCCHHHHGGGCCSEEEEEEECSTTHHHHHHHHHHTTTCCC--
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 886664458599999999985599897997999999999997589989999988998889999999987074576
No 10
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=0 Score=400.62 Aligned_cols=329 Identities=19% Similarity=0.255 Sum_probs=246.1
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||+.|++++|+.+|.....++ |++...... .......+++|+|+||+.+
T Consensus 118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~--g~~~~~~~~----------------~~~~~~~~~~V~E~s~~~~ 179 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGK----------------NAHLGASRYLIAEADESDA 179 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE--EEEETTTTE----------------EEECCSSSEEEEECCCTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE--CCCCCCCCH----------------HCCCCCCCEEEEEECCCHH
T ss_conf 5257886567875179999999997799978998--981465410----------------0336898728999763445
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 554310432121112321545543211-0112234554210000001223211125420001222102356532222233
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
. ...++|+++|||||++||||+|+ ++|+|+++|.+||+. .+.++.+|+|.||+....+.+. ...++++||..
T Consensus 180 ~---~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~-~~~~~~~i~n~dd~~~~~~~~~---~~~~~~~fg~~ 252 (475)
T 1p3d_A 180 S---FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHN-LPFYGLAVMCADDPVLMELVPK---VGRQVITYGFS 252 (475)
T ss_dssp G---GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTT-SCTTCEEEEETTCHHHHHHHHH---HCSEEEEEESS
T ss_pred H---HHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---HCCCEEEECCC
T ss_conf 5---863599889996787124201068899999999999956-9948889996886788766786---37857995257
Q ss_pred C-CCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3-3220000001454443211222-1001012234332221105778887752026767631112344334552100013
Q gi|254781102|r 274 G-KFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 (497)
Q Consensus 274 ~-~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~ 351 (497)
. .+..............+.+... .....+.++++|.||++|+++|++++..+|++++.+.++|.+|++++||+|.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiava~~lGi~~e~i~~aL~~f~g~~~R~e~~~e 332 (475)
T 1p3d_A 253 EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGE 332 (475)
T ss_dssp TTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEE
T ss_pred CCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 66552211100001465200012444201220046754669999999999998499999999767643787531106889
Q ss_pred ---CCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCC-CHHHHHHHHHHHHCCEEEECCCCCCCCC--
Q ss_conf ---5578602300037868999974121100234-44035402665460-0468999999861989999088798989--
Q gi|254781102|r 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSED-- 424 (497)
Q Consensus 352 ---~~~~~~viiDyahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~-~kr~~mg~~a~~~ad~vi~t~d~~r~e~-- 424 (497)
..++..+++||||||+++++++++++++.++ |+++++|..+..+. .....+++ +...+|.++++.+++++|.
T Consensus 333 i~~~~~~~~iiDDya~~p~si~a~l~al~~~~~~~~ii~i~~~~~~~~~~~~~~e~~~-~l~~~d~vil~~i~~a~e~~~ 411 (475)
T 1p3d_A 333 FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQ-VLSQVDALIMLDVYAAGEAPI 411 (475)
T ss_dssp EEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTHHHHHH-HHTTSSEEEEECCBCTTCCCC
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH-HHHHCCEEEECCCCCCCCCCC
T ss_conf 9954897899976788979999999999865699769999547777327899999999-998499999877667766654
Q ss_pred ----HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf ----8999999983-47980997898999999999658988999944688
Q gi|254781102|r 425 ----PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 425 ----~~~I~~~i~~-g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~ 469 (497)
.+.|.+.+.. +-.+.....|+.||++.+.+++++||+||+.|.|.
T Consensus 412 ~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~GsG~ 461 (475)
T 1p3d_A 412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS 461 (475)
T ss_dssp TTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST
T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 58489999999986089897996999999999998589989999978998
No 11
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=0 Score=381.01 Aligned_cols=353 Identities=20% Similarity=0.209 Sum_probs=257.9
Q ss_pred HHHHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC--------CCCC-------------
Q ss_conf 99999998276200--224565430652000123333321023222223454433--------2355-------------
Q gi|254781102|r 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--------SFAQ------------- 158 (497)
Q Consensus 102 L~~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~--------~~~~------------- 158 (497)
+.+|.+ ..++|.. ++|+||||||||||++|++++|+.+|++++.++++.... +...
T Consensus 38 ~~~~l~-~lg~P~~~l~vI~VtGTNGKtSt~~~l~~iL~~~g~kvG~~tSp~l~~~~Eri~ing~~~~~~~~~~~~~~~~ 116 (442)
T 1o5z_A 38 ISMLLS-KLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME 116 (442)
T ss_dssp HHHHHH-HTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCEECCHHHHHHHHHHHH
T ss_conf 999999-7299076099899978724799999999999987998899788762742018999999447889999999877
Q ss_pred -------CCCCCCCCHHHH--HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf -------445767531221--111111011223333356676665554310432121112321545543211-0112234
Q gi|254781102|r 159 -------DNRLTTPSPIYL--AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFN 228 (497)
Q Consensus 159 -------~~~~TtP~~~~l--~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~ 228 (497)
......|..+++ ...+..+...+++++++|++++|. +.+...+.++++++||++.||.++++ +++.++.
T Consensus 117 ~~~~~~~~~~~~~~~~fe~~~~~~~~~f~~~~~d~~i~e~g~~g~-~d~~~~~~~~~~vit~i~~dh~~~Lg~~l~~i~~ 195 (442)
T 1o5z_A 117 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGR-LDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAW 195 (442)
T ss_dssp HHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST-TCGGGGCCCSCEEECCCCC-------CCHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCE-ECCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 655433015788898999999999998543368689886044540-3124650331011432023378888888999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 55421000000122321112542000122210235653222223333220000001454443211222100101223433
Q gi|254781102|r 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 (497)
Q Consensus 229 aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G 308 (497)
+|..++.. ....+++.+++....+............ .................+..+.+...+....+.++++|
T Consensus 196 ~k~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 269 (442)
T 1o5z_A 196 EKSGIIKE----RVPLVTGERKREALKVMEDVARKKSSRM--YVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNG 269 (442)
T ss_dssp HHGGGCCT----TCCEEECCCCHHHHHHHHHHHHHHTCCE--EEBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCS
T ss_pred HHHCCCCC----CCCCCCCCCCHHHHHHHHHHHHHCCCCE--EEEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 86311235----7741004555588999999999608863--78740100111101346733653276630243546674
Q ss_pred CCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 22211057788877520267--6763111234433455210001355786023000378689999741211002-34440
Q gi|254781102|r 309 EFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRII 385 (497)
Q Consensus 309 ~hni~NalaAia~a~~lGi~--~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i 385 (497)
.||++|+++|++++..+|++ .+.+.+++..+. +|||||++.. +++.+|+||||||+|++++++++++.. .+|++
T Consensus 270 ~~ni~Na~~Aiaa~~~lg~~i~~~~~~~~l~~~~-~pGR~e~i~~--~~~~viiD~AHNp~ai~~ll~~l~~~~~~~~i~ 346 (442)
T 1o5z_A 270 PHQIENAGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK--NGKMYILDGAHNPHGAESLVRSLKLYFNGEPLS 346 (442)
T ss_dssp THHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE--TTEEEEECCCCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCCCCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 6799999999999998398336787655653366-8997744236--675699977879899999999998874568748
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCEEEECC-CCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 35402665460046899999986198999908-87989898999999983479809978989999999996589889999
Q gi|254781102|r 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 386 ~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~-d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
+||||+||||. ..|.+.+.+.+|.+|+|. ||||+++|+.|.+.+.....++..+.|+.+|++ +++|+|||
T Consensus 347 ~V~G~~~dKD~---~~~l~~l~~~~d~viit~~~~~R~~~~~~i~~~~~~~~~~~~~~~d~~~ai~------~~~d~vlV 417 (442)
T 1o5z_A 347 LVIGILDDKNR---EDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFFKNVEVIEDPLEAIE------STERATVV 417 (442)
T ss_dssp EEECCCTTSCH---HHHHGGGTTTCSEEEECCCSSTTCCCHHHHHHHHHHHCSCCEECSSHHHHHH------TCCSEEEE
T ss_pred EEEEEECCCCH---HHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH------CCCCCEEE
T ss_conf 99985079899---9999998855799999899996768999999999985798411855999972------79999999
Q ss_pred EC---------------CCCCCCEE
Q ss_conf 44---------------68866358
Q gi|254781102|r 465 AG---------------KGHETVHI 474 (497)
Q Consensus 465 ~G---------------kG~e~~~~ 474 (497)
+| |++|+||+
T Consensus 418 ~GSlylvg~v~~~l~~~k~~~e~~~ 442 (442)
T 1o5z_A 418 TGSLFLVGYVREFLTTGKINEEWKL 442 (442)
T ss_dssp ESCHHHHHHHHHHHHHSSCCGGGGC
T ss_pred EEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 8119999999999970998882209
No 12
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=0 Score=378.10 Aligned_cols=375 Identities=22% Similarity=0.238 Sum_probs=256.6
Q ss_pred EEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 45302314689889980388767688899999859889998473223--3343223479709997998999999999982
Q gi|254781102|r 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 (497)
Q Consensus 33 i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~ 110 (497)
..+|.|...+..-++...+....|+. -+ ..-+++.++|++...+. +........++|++- .. +++..+
T Consensus 32 ~~~D~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~d~vV~SpgI~~~~p~l~~a~~~~i~i~~--~~-----el~~~~- 101 (439)
T 2x5o_A 32 RVMDTRMTPPGLDKLPEAVERHTGSL-ND-EWLMAADLIVASPGIALAHPSLSAAADAGIEIVG--DI-----ELFCRE- 101 (439)
T ss_dssp EEEESSSSCTTGGGSCTTSCEEESSC-CH-HHHHTCSEEEECTTSCTTCHHHHHHHHTTCEEEC--HH-----HHHHHH-
T ss_pred EEEECCCCCCHHHHHHHCCCEEECCC-CH-HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEE--HH-----HHHHHH-
T ss_conf 99979899215899984898763687-97-7858998999899139999999999985992874--68-----888763-
Q ss_pred CCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 76200224565430652000123333321023222223454433235544576753122111111101122333335667
Q gi|254781102|r 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 (497)
Q Consensus 111 ~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvS 190 (497)
.+.++||||||||||||++|++++|+..|..+...|+.+... . .....+.+++++|+|
T Consensus 102 --~~~~~IaVTGT~GKTTTt~~l~~iL~~~~~~~~~~g~~g~~~------------~--------~~~~~~~~~~vve~~ 159 (439)
T 2x5o_A 102 --AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA------------L--------MLLDDECELYVLELS 159 (439)
T ss_dssp --CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCH------------H--------HHCCTTCCEEEEECC
T ss_pred --CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCC------------C--------CCCCCCCCEEEEECC
T ss_conf --567689987899844799999999876386501135546730------------1--------033578878999900
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 666555431043212111232154554321101-1223455421000000122321112542000122210235653222
Q gi|254781102|r 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 (497)
Q Consensus 191 S~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~-e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~ 269 (497)
|+.+. +.....|+++|||||++||||+|+++ |+|+.+|.+|+.. .+..|+|.||+....+. ....++++
T Consensus 160 ~~~~~--~~~~~~p~iavitNi~~dHld~~~~~~e~y~~~k~~i~~~----~~~~v~n~dd~~~~~~~----~~~~~~~~ 229 (439)
T 2x5o_A 160 SFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVVNADDALTMPIR----GADERCVS 229 (439)
T ss_dssp HHHHH--TCCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT----CSEEEEETTCGGGSCSC----CCSSCCEE
T ss_pred CCCCC--CCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC----CCEEEECCCHHHHHHHH----HCCCCEEE
T ss_conf 35534--5544476500102655410353111479999998653036----73366435148899987----43674467
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22333322000000145444321122210010122343322211057788877520267676311123443345521000
Q gi|254781102|r 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
|+.+...... ........+.+........++++++|.||++|+++|++++..+|+++++|.++|++|++++||||.+
T Consensus 230 ~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lGi~~~~i~~~L~~f~gv~~R~e~~ 306 (439)
T 2x5o_A 230 FGVNMGDYHL---NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 306 (439)
T ss_dssp ECSSSSSEEE---EEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred EECCCCCCCC---CCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 5024443320---0036615998358512222211556605577787799999983996999999997577974426899
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
... ++.++|+| |||||+|++++|++++.... +++++ .|.+|+...++ +++.+.+..+.+++. +|+...|
T Consensus 307 ~~~-~g~~~idD~~a~np~a~~~al~~~~~~~~--~~~i~-~g~~~~~~~~~-l~~~~~~~~~~v~~~-----G~~~~~i 376 (439)
T 2x5o_A 307 LEH-NGVRWINDSKATNVGSTEAALNGLHVDGT--LHLLL-GGDGKSADFSP-LARYLNGDNVRLYCF-----GRDGAQL 376 (439)
T ss_dssp EEE-TTEEEEECTTCCSHHHHHHHHTTCCCSSC--EEEEE-ESBCTTCCCGG-GGGGSCSSSEEEEEE-----STTHHHH
T ss_pred EEE-CCEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEEE-CCCCCCCCHHH-HHHHHHCCCCEEEEE-----CCCHHHH
T ss_conf 950-99899995379998999999996664488--66997-47886447899-999985048899998-----9898999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9999834798099789899999999965898899994
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~ 465 (497)
... . -.....+.|++||++.|.++++|||+||+.
T Consensus 377 ~~~-~--~~~~~~~~~l~eav~~a~~~~~~gDvVLlS 410 (439)
T 2x5o_A 377 AAL-R--PEVAEQTETMEQAMRLLAPRVQPGDMVLLS 410 (439)
T ss_dssp HTT-S--GGGEEECSSHHHHHHHHGGGCCTTCEEEEC
T ss_pred HHH-C--CCCEEECCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 853-7--777177598999999999858992999979
No 13
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Probab=100.00 E-value=0 Score=367.94 Aligned_cols=340 Identities=16% Similarity=0.178 Sum_probs=236.0
Q ss_pred HCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCCC-------------CCCCC
Q ss_conf 276200--22456543065200012333332102322222345443323---------5544-------------57675
Q gi|254781102|r 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF---------AQDN-------------RLTTP 165 (497)
Q Consensus 110 ~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~---------~~~~-------------~~TtP 165 (497)
.++|+. ++|+||||||||||++|++++|+++|++++.++++...... ..+. ....|
T Consensus 45 lg~P~~~~~vI~VtGTNGKtSt~~~i~~iL~~~g~kvG~~tSPhl~~~~Eri~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (437)
T 3nrs_A 45 LDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRGDISL 124 (437)
T ss_dssp TTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHHHHHHHCCCCCCC
T ss_conf 29930039889997783089999999999998799879978884150123699899642689987887643320478887
Q ss_pred CHHHHH--HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 312211--11111011223333356676665554310432121112321545543211-011223455421000000122
Q gi|254781102|r 166 SPIYLA--KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKES 242 (497)
Q Consensus 166 ~~~~l~--~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~ 242 (497)
..+++. ..+..+.+.+++++++|+ |+|..+.|+..+.|+++|||||+.||+|+|| |++.|+.+|+.|+... .
T Consensus 125 ~~~e~~~~~a~~~~~~~~~d~~i~E~-g~gg~~d~t~~~~~~~~viTnI~~DH~d~lg~t~~~Ia~~K~~i~k~~----~ 199 (437)
T 3nrs_A 125 TYFEFGTLSALQLFKQAKLDVVILEV-GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGG----K 199 (437)
T ss_dssp CHHHHHHHHHHHHHHHTCCSEEEEEC-SSSSTTSGGGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTT----S
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEC-CCHHHHCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCCC----C
T ss_conf 74788999999999756985899704-713441775256544156614242067651414899999961631369----8
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC--CEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 3211125420001222102356532222233332200--00001454443211222100101223433222110577888
Q gi|254781102|r 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 (497)
Q Consensus 243 ~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia 320 (497)
..++...+ ....+.+.+.......+.++........ ...............+....+.+.....|.||+.|+++|++
T Consensus 200 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~na~~a~a 278 (437)
T 3nrs_A 200 PAVVGEPD-MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALA 278 (437)
T ss_dssp EEEECCSS-CCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTEEEEEECCCSSCHHHHHHHHH
T ss_pred CCCCCCCC-CHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
T ss_conf 63113333-24679999987177301047422221223012222322222442013541001021155799999998766
Q ss_pred HHHHCCCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC-------CCCCCCEEEECC
Q ss_conf 7752026767--6311123443345521000135578602300037868999974121100-------234440354026
Q gi|254781102|r 321 LCIAIGIDSA--LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCG 391 (497)
Q Consensus 321 ~a~~lGi~~~--~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~-------~~~r~i~V~G~~ 391 (497)
++..++++.. .+..++... ..|||||++. +++.+|+||||||+|+++++++++++ ..+|+++|||++
T Consensus 279 ~~~~~~~~i~~~~~~~~~~~~-~~pGR~e~i~---~~~~~ilD~AHNp~a~~~l~~~l~~~~~~~~~~~~~ki~~V~G~~ 354 (437)
T 3nrs_A 279 VLHYSELPLSDEAIRQGLQAA-SLPGRFQVVS---EQPLLILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 354 (437)
T ss_dssp HHHHHTCCCCHHHHHHHHHHC-CCTTSSEEEE---TTTEEEECCCCSHHHHHHHHHHHHHTC--------CCEEEEECCB
T ss_pred HHHHCCCCCCHHHHHHHHCCC-CCCCCEEEEC---CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 554303344199998753125-7688511550---467456624778899999999999986444301479869996435
Q ss_pred CCCCCCHHHHHHHHHHHHCCEEEEC-CCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6546004689999998619899990-88798989899999998347980997898999999999658988999944
Q gi|254781102|r 392 GDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 392 Gdrd~~kr~~mg~~a~~~ad~vi~t-~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
||||.. .|.+.+++.+|.+|+| .|+||+++|+.|.+ .+.+...++|+++|++.|+++|++||+|||+|
T Consensus 355 ~dKd~~---~~l~~l~~~~~~ii~~~~d~~r~~~~~~l~~----~~~~~~~~~~~~eAi~~a~~~a~~~d~vLI~G 423 (437)
T 3nrs_A 355 SDKDIA---GTLACLSERVDEWYCAPLEGPRGASAGQLAE----HLVSARQFSDVETAWRQAMQDADTQDVVIVCG 423 (437)
T ss_dssp TTBCHH---HHHHHHTTTCCEEEECCCSSTTBCCHHHHHT----TCSSCEECSSHHHHHHHHHHHCCTTCEEEEES
T ss_pred CCCCHH---HHHHHHHHHCCEEEEECCCCCCCCCHHHHHH----HHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 888999---9999988558999997999977799999999----88757636999999999998479988699971
No 14
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=0 Score=349.82 Aligned_cols=357 Identities=19% Similarity=0.203 Sum_probs=239.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC---------CCC
Q ss_conf 970999799899999999998276200--224565430652000123333321023222223454433---------235
Q gi|254781102|r 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---------SFA 157 (497)
Q Consensus 89 ~~p~i~V~d~~~aL~~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~---------~~~ 157 (497)
+.|.+.......-..++... +++|+. ++||||||||||||++|++++|+.+|++++.+++++... ...
T Consensus 12 ~~~~~~~~~~~~r~~~~l~~-lg~P~~~~~~I~VTGTNGKTTTs~~l~~iL~~~G~kvG~~tSp~l~~~~eri~~~g~~i 90 (428)
T 1jbw_A 12 SFPRLAKTGDHRRILTLLHA-LGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPI 90 (428)
T ss_dssp TCCCCCCCSSCHHHHHHHHH-TTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEEC
T ss_pred HCCCCCCCCCHHHHHHHHHH-CCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEEC
T ss_conf 27755778987999999997-49938709989998982279999999999998899889978887470244899999955
Q ss_pred CCCC----------------------CCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5445----------------------767531221111111011223333356676665554310432121112321545
Q gi|254781102|r 158 QDNR----------------------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 (497)
Q Consensus 158 ~~~~----------------------~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~d 215 (497)
.+.. .+|+..+.....+..+.+.+++++++|++. +..+.+...+.++++++||++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~e~~~-~~~~~~~~~~~~~~~~it~i~~d 169 (428)
T 1jbw_A 91 PDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGI-GGDTDSTNVITPVVSVLTEVALD 169 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSS-SSTTSTTCSCCCSEEEECCCCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHCCCCEEEECCEEEEECCCCH
T ss_conf 78999999999899999887522688886899999999999987267479975230-21104625741232234044500
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH-HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 54321-101122345542100000012232111254200-0122210235653222223333220000001454443211
Q gi|254781102|r 216 HIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 (497)
Q Consensus 216 HLd~~-gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~-~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i 293 (497)
|.+++ .+++.++..|..++.. ....+.+..++.. ............ .+.....++..........+..+.+
T Consensus 170 h~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (428)
T 1jbw_A 170 HQKLLGHTITAIAKHKAGIIKR----GIPVVTGNLVPDAAAVVAAKVATTGS---QWLRFDRDFSVPKAKLHGWGQRFTY 242 (428)
T ss_dssp CHHHHCSSHHHHHHHHGGGCCT----TCCEEECCCCHHHHHHHHHHHHHHTC---CEEEBTTTEEEEEEEECSSSEEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHCC----CCCEEECCCCCHHHHHHHHHHHHHCC---CEEECCCCCCCCHHHHCCCCCCEEE
T ss_conf 8988665399999985413324----65301035671467899999986178---4120254222201110245761134
Q ss_pred CCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCH
Q ss_conf 222-100101223433222110577888775202------6767631112344334552100013557860230003786
Q gi|254781102|r 294 SVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 (497)
Q Consensus 294 ~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lG------i~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP 366 (497)
... +....+.++++|.||++|+++|++++..++ .....+.++|..+++ |||||.+. +++.||+||||||
T Consensus 243 ~~~~~~~~~~~~~l~G~~~~~N~~~aia~~~~~~~~~~~~~~~~~i~~~l~~~~~-~gR~e~i~---~~~~iivD~AHnp 318 (428)
T 1jbw_A 243 EDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHW-PARLEKIS---DTPLIVIDGAHNP 318 (428)
T ss_dssp EETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCCC-TTSSEEEE---TTTTEEEECCCSH
T ss_pred ECCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCEEEEEC---CCCEEEEECCCCH
T ss_conf 0221000235778753568888999999999986521010147887634303566-87567852---6637999668899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC-CCCCCCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 899997412110023444035402665460046899999986198999908-8798989899999998347980997898
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~-d~~r~e~~~~I~~~i~~g~~~~~~~~dr 445 (497)
+|++++++++++++++|+++||||+||||. +.|++.+++.+|.+++|. ++++.+.++.+.+++..+ ...+++
T Consensus 319 ~a~~~~l~~l~~~~~~k~~~V~G~~gdkD~---~~~~~~~~~~~d~v~i~~~~~~~r~~~~~~~~~~~~~----~~~~~~ 391 (428)
T 1jbw_A 319 DGINGLITALKQLFSQPITVIAGILADKDY---AAMADRLTAAFSTVYLVPVPGTPRALPEAGYEALHEG----RLKDSW 391 (428)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEECSSSTTH---HHHHHHHHHHCSEEEECCCSCC-------------------CBCSSH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCH---HHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHCC----CCCCCH
T ss_conf 999999999997339984599853179799---9999998855799999999999664709999876217----645889
Q ss_pred HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999999658988999944
Q gi|254781102|r 446 IEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 446 ~eAi~~A~~~a~~gDvili~G 466 (497)
++|++.|+++++ +|.|||+|
T Consensus 392 ~eAi~~a~~~~~-~d~ilI~G 411 (428)
T 1jbw_A 392 QEALAASLNDVP-DQPIVITG 411 (428)
T ss_dssp HHHHHHHHHHCT-TSCEEEEE
T ss_pred HHHHHHHHHHCC-CCCEEEEC
T ss_conf 999999997489-99699976
No 15
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=0 Score=337.96 Aligned_cols=340 Identities=17% Similarity=0.216 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCC--------------
Q ss_conf 89999999999827620022456543065200012333332102322222345443323--55445--------------
Q gi|254781102|r 98 TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNR-------------- 161 (497)
Q Consensus 98 ~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~--~~~~~-------------- 161 (497)
.+..|.+|. ....+.++||||||||||||++|++++|+++|++++.+||++..... .....
T Consensus 35 ~~~~~~~l~---~p~~~~~vI~VTGTNGKTTT~~li~~iL~~~G~~vg~~~sp~l~~~~eri~~~~~~i~~~~~~~~~~~ 111 (422)
T 1w78_A 35 VSLVAARLG---VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAE 111 (422)
T ss_dssp HHHHHHHHT---CSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHCC---CCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHHHH
T ss_conf 999999749---96215988999888218999999999999889988997987726044238999874356876657788
Q ss_pred ------CCCCCHHHHHHHH--HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf ------7675312211111--11011223333356676665554310432121112321545543211-01122345542
Q gi|254781102|r 162 ------LTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMR 232 (497)
Q Consensus 162 ------~TtP~~~~l~~~l--~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~ 232 (497)
..+|...++...+ ..+...+++++++|+++++ .+.+...+.++++++|||+.||+|+++ +++.+...|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~a~~~f~~~~~d~~~~e~~~~~-~~d~~~~~~~~~~~~t~i~~dH~d~l~~~~~~i~~~k~~ 190 (422)
T 1w78_A 112 IESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG-RLDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAG 190 (422)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSS-TTSGGGGSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGG
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHCCCCCCCCCCEECCCCCHHHHHHHCCHHHHHHHHHHH
T ss_conf 8887337887567899999999987659987998446377-636422211132000455211666425376778999875
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC-CCCCEEECCCCCCCCCC
Q ss_conf 10000001223211125420001222102356532222233332200000014544432112-22100101223433222
Q gi|254781102|r 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQ 311 (497)
Q Consensus 233 If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~l~G~hn 311 (497)
++.. +...++...+... ................... ..... ....+.+. ..+....+.+++.|.||
T Consensus 191 ~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~N 257 (422)
T 1w78_A 191 IFRS----EKPAIVGEPEMPS-TIADVAQEKGALLQRRGVE------WNYSV--TDHDWAFSDAHGTLENLPLPLVPQPN 257 (422)
T ss_dssp GCCT----TSEEEECCSSCCH-HHHHHHHHHTCEEEEBTTT------BEEEE--CSSCEEEEETTEEEEEECCCSSCHHH
T ss_pred HHCC----CCCCCHHCCCHHH-HHHHHHHHHHHHHHHHHHH------HCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 4316----8853001000366-7788888764577776554------10210--02443234654542222224567778
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEEC
Q ss_conf 110577888775202676763111234433455210001355786023000378689999741211002-3444035402
Q gi|254781102|r 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGC 390 (497)
Q Consensus 312 i~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~V~G~ 390 (497)
+.|+++|++ +...+++.+.|.+++.... +|||+|.+. ++.++|+||||||+|+++++++++.+. .+++++|||+
T Consensus 258 ~~nAlaa~~-~~~~~~~~~~I~~~~~~~~-~~gR~e~l~---~~~~viiD~AHNp~a~~a~l~~l~~~~~~~~ii~i~G~ 332 (422)
T 1w78_A 258 AATALAALR-ASGLEVSENAIRDGIASAI-LPGRFQIVS---ESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGM 332 (422)
T ss_dssp HHHHHHHHH-HHTCCCCHHHHHHHHHHCC-CTTSSEEEE---TTTEEEEECCCSHHHHHHHHHHHHHSCSCSCEEEEECC
T ss_pred HHHHHHHHH-HHCCCCCHHHHHHHHCCCC-CCCCEEEEC---CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 999999999-8278867899987412345-567316961---48749997688989999999853554258753782155
Q ss_pred CCCCCCCHHHHHHHHHHHHCCEEEEC-CCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66546004689999998619899990-88798989899999998347980997898999999999658988999944
Q gi|254781102|r 391 GGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 391 ~Gdrd~~kr~~mg~~a~~~ad~vi~t-~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
++|||. +..| +..++..+.++++ .|+||+++|++|.+.+. +...++|++|||+.|+++|++||+|||+|
T Consensus 333 ~~dkd~--~~~~-~~~~~~~~~iii~~~~~~r~~~~~~i~~~~~----~~~~~~~~~eAi~~a~~~a~~~d~VLI~G 402 (422)
T 1w78_A 333 LHDKDI--AGTL-AWLKSVVDDWYCAPLEGPRGATAEQLLEHLG----NGKSFDSVAQAWDAAMADAKAEDTVLVCG 402 (422)
T ss_dssp BTTSCH--HHHH-HHHHTTCSEEEECCCCSSSBCCHHHHHHHHS----SCEECSSHHHHHHHHHHHCCTTCEEEEES
T ss_pred CCCCCH--HHHH-HHHHHHCCEEEEECCCCCCCCCHHHHHHHHC----CCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 578689--9999-9988656999998999977799999999852----18746999999999998579988799954
No 16
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=3.4e-40 Score=278.83 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=157.5
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
...++||||||||||||++|++++|+.+|.++..+.. +...+...+..+... .........+|+|+|+||+
T Consensus 106 ~~~~vIaVTGTnGKTTTt~mi~~iL~~~g~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~V~E~~~~ 176 (326)
T 3eag_A 106 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG-GVPENFGVSARLPQT--------PRQDPNSQSPFFVIEADEY 176 (326)
T ss_dssp GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECS-SEETTSSCSEECCCC--------CSSCTTSCCCEEEEECCCS
T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCC--------CCCCCCCCCCEEEEECCCC
T ss_conf 5673799946899554999999999861998311145-532245760013555--------4444455673222221576
Q ss_pred HHH----HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 655----5431043212111232154554321101122345542100000012232111254200012221023565322
Q gi|254781102|r 193 GLD----QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 (497)
Q Consensus 193 gl~----~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~ 268 (497)
++. +.++...+|+++|||||++||||||+|+|+|+++|.++|.. .++.+.+|+|.||+....+.++.. ..+++
T Consensus 177 ~~~~~~~~~~~~~~~p~iaviTNI~~DHLd~~~s~e~y~~~k~~~~~~-~~~~g~~v~n~d~~~~~~~~~~~~--~~~~~ 253 (326)
T 3eag_A 177 DTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT-VPSEGLIVCNGRQQSLQDTLDKGC--WTPVE 253 (326)
T ss_dssp EEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT-SCTTSEEEEESSCHHHHHHHTTCC--CSCEE
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHC--CCCCC
T ss_conf 535677403443468978999644454224348999999999999974-365738999378789999986521--35520
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 22233332200000014544432112221001-0122343322211057788877520267676311123443345
Q gi|254781102|r 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 (497)
Q Consensus 269 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~ 343 (497)
+|+.+.. ..... ......|.+..+++.. +++++++|+||++|++||+++|..+|+++++|.++|++|+++.
T Consensus 254 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~a~~lGi~~~~i~~aL~~F~GV~ 325 (326)
T 3eag_A 254 KFGTEHG-WQAGE---ANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp EESSSSS-EEEEE---ECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred CCCCCHH-HHHHH---HCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 0254202-22333---147716999999918899997865299999999999999984999999999974698989
No 17
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.84 E-value=9.8e-21 Score=152.46 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=102.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 20267676311123443345521000135578602300037868999974121100234440354026654600468999
Q gi|254781102|r 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 (497)
Q Consensus 324 ~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg 403 (497)
..|+ +.+.++|..|+++++|||++.. .+|.+||+||||||++++++++++++..+.++++++..++.....++..+.
T Consensus 8 ~~gi--d~~~~~l~~~~g~~RR~E~v~~-~~g~~vidDyAHnP~~i~a~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (163)
T 3mvn_A 8 SSGV--DLGTENLYFQSNAQRRLEVKGV-VNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKH 84 (163)
T ss_dssp ---------------------CCEEEEE-ETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CH
T ss_pred CCCH--HHHHHHHHHCCCCCCCEEEEEE-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 2254--8999888757897635499972-599489996899989999999999862366538842022331144676699
Q ss_pred HHHHH--HCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99986--1989999088798989899999998347980997898999999999658988999944688
Q gi|254781102|r 404 KIALD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 404 ~~a~~--~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~ 469 (497)
+.+.. .++.++++.+.+..+.+..+.+ ....+...++|+.+|++.+.++++|||+||++|+|.
T Consensus 85 e~~~~l~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~eai~~l~~~a~~gDvVL~~G~G~ 149 (163)
T 3mvn_A 85 ELATSLQDADSVFIYQPPTIEWQVSEVLA---NLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGA 149 (163)
T ss_dssp HHHHHHTTCSEEEEECC----CCHHHHHT---TCCSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99998513779998278541143688987---504682996589999999998679969999984997
No 18
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.34 E-value=0.014 Score=34.52 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=29.7
Q ss_pred HHHHHCCCCCC---EEEEEEEE--CCCEEHHHHHHHHHHC--CCCCCCCC
Q ss_conf 99982762002---24565430--6520001233333210--23222223
Q gi|254781102|r 106 ASRLYGKHPEN---ILAVTGTS--GKSSVASFVQQICQRS--GLSSFQIG 148 (497)
Q Consensus 106 a~~~~~~~~~~---vIgITGTn--GKTTt~~~l~~iL~~~--g~~~~~~g 148 (497)
-..|.+....+ +|||+|+. ||||++..|..+|+.. +.++..+.
T Consensus 68 ~~~fl~~~~~k~P~IIGIaG~sgsGKSTla~~L~~lL~~~~~~~~v~lis 117 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99984688999968999989998879999999999971016999659985
No 19
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.88 E-value=0.016 Score=34.21 Aligned_cols=32 Identities=41% Similarity=0.640 Sum_probs=27.0
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565430--65200012333332102322222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+||||||+. ||||++..+.++|...|.++..+
T Consensus 6 pIIgItG~SGSGKTTva~~L~~il~~~~v~~~vI 39 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7899989997809999999999853469976999
No 20
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.83 E-value=0.035 Score=31.99 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCC-CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999827620-0224565430--65200012333332102322222
Q gi|254781102|r 102 LSLFASRLYGKHP-ENILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 102 L~~la~~~~~~~~-~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.+.+...+....+ .++|||||.. ||||++.+|+..|...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~i 56 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999997503499968999889898999999999999973428981575
No 21
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=93.73 E-value=0.32 Score=25.72 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCC--HHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 057788877520267676311123443345521000135578602300-0378--6899997412110023444035402
Q gi|254781102|r 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT--SNSLEMILKNIRTITSGRIIVVFGC 390 (497)
Q Consensus 314 NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahN--P~s~~~aL~~l~~~~~~r~i~V~G~ 390 (497)
|++.++.-|...+...-++...|+. +.||...-..... .++.- |..+ -+.++...+...+-.++|.-+.++-
T Consensus 537 Nlm~~~ieAara~ATlGEis~alr~---v~G~~~a~~~~~~--gv~~~~~~~~e~fe~lr~~~~~f~~~~GrrPrillak 611 (762)
T 2xij_A 537 NILALAVDASRARCTVGEITDALKK---VFGEHKANDRMVS--GAYRQEFGESKEITSAIKRVHKFMEREGRRPRLLVAK 611 (762)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH---HHCCCCCCCCCCC--SHHHHHHCSCHHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH---HCCCCCCCCCCCC--CCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6389999999834887889999998---4464448876566--5201013554689999999999999829997599965
Q ss_pred CCCCCCCHH-HHHHH-HHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEC--C--H---HHHHHHHHHHCCCCCE
Q ss_conf 665460046-89999-998619899990887989898999999983479809978--9--8---9999999996589889
Q gi|254781102|r 391 GGDRDQGKR-PIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--N--R---IEAIRTAIEMLNKQDV 461 (497)
Q Consensus 391 ~Gdrd~~kr-~~mg~-~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~--d--r---~eAi~~A~~~a~~gDv 461 (497)
+|--...++ ..++- .++-..|.++ +|-+..|+.+++...+.-..++.++ | . ..++-.+++.++.+|+
T Consensus 612 mG~dgH~~ga~~iA~~F~d~GfeV~~----~~~f~TpeE~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~Lk~~g~~~i 687 (762)
T 2xij_A 612 MGQDGHDRGAKVIATGFADLGFDVDI----GPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDI 687 (762)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCEEEE----CCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTS
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEE----CCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 78774410199999999857902852----78778999999999976999999926876568899999999996699986
Q ss_pred EEEEC
Q ss_conf 99944
Q gi|254781102|r 462 LVVAG 466 (497)
Q Consensus 462 ili~G 466 (497)
.+++|
T Consensus 688 ~Vvvg 692 (762)
T 2xij_A 688 LVMCG 692 (762)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 79980
No 22
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=93.61 E-value=0.093 Score=29.23 Aligned_cols=75 Identities=20% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 57430024530231468988998038876768889999985988999847322333432234797099979989999999
Q gi|254781102|r 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 (497)
Q Consensus 26 ~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~l 105 (497)
.|.+|++++.= ...++|+|=|.- ..+|++++-+-.|+++|+..+... ....++++++|++.++.++
T Consensus 21 ~~~~I~~i~~l-~~A~~~~LsFl~------~~ky~~~l~~t~A~avIv~~~~~~-------~~~~~~ii~~~p~~a~a~~ 86 (341)
T 3eh0_A 21 GDIVITGVASM-QSAQTGHITFMV------NPKYREHLGLCQASAVVMTQDDLP-------FAKSAALVVKNPYLTYARM 86 (341)
T ss_dssp SCCEECEECCT-TTCCTTEEEECC------CSSGGGGGGGCCCSEEEECTTTGG-------GCCSCEEECSCHHHHHHHH
T ss_pred CCEEEECCCCH-HHCCCCCEEEEC------CHHHHHHHHHCCCEEEEECHHHCC-------CCCCCCEEECCHHHHHHHH
T ss_conf 98089656397-778998389981------978888886479709993567713-------0578608985828987633
Q ss_pred HHHHHCCCC
Q ss_conf 999827620
Q gi|254781102|r 106 ASRLYGKHP 114 (497)
Q Consensus 106 a~~~~~~~~ 114 (497)
+..++..+.
T Consensus 87 ~~~~~~~~~ 95 (341)
T 3eh0_A 87 AQILDTTPQ 95 (341)
T ss_dssp HHHHCCCCC
T ss_pred HHHHCCCCC
T ss_conf 244304764
No 23
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=93.41 E-value=0.061 Score=30.43 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.6
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCC
Q ss_conf 24565430--652000123333321023
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGL 142 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~ 142 (497)
+|||+|+. ||||++..|..+|...+.
T Consensus 92 IIGIaG~sgSGKST~a~~L~~lL~~~~~ 119 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998898987899999999999853078
No 24
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.81 E-value=0.025 Score=32.91 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=28.7
Q ss_pred CEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430---652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS---GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
|.|=||||. ||||++..|++.|.+.|+++..+-
T Consensus 2 ~~~~Itgt~~GVGKTtvs~~La~~La~~G~rV~~~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 529999899997599999999999997799499988
No 25
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.54 E-value=0.092 Score=29.27 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCC-C-CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 89999999999827620-0-224565430--6520001233333210232222
Q gi|254781102|r 98 TRKFLSLFASRLYGKHP-E-NILAVTGTS--GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 98 ~~~aL~~la~~~~~~~~-~-~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
.+.-+..+++.....++ . -+|||||.. ||||++.+|+..|...|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~ 55 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 68999999999970567998899988989889999999999983524776022
No 26
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.41 E-value=0.059 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=25.0
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|.||+ |||||..=++..+...|+++..+.
T Consensus 107 vG~~Gv-GKTTT~aKLA~~~~~~g~kv~Lva 136 (504)
T 2j37_W 107 VGLQGS-GKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp ECSTTS-SHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCCC-CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 668788-865508999999986002020000
No 27
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.28 E-value=0.017 Score=33.99 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=38.3
Q ss_pred CCCEEEECCHHHH----HHHHHHHH---HCCCCCCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 9709997998999----99999998---27620022456543---065200012333332102322222
Q gi|254781102|r 89 NTPILVVDNTRKF----LSLFASRL---YGKHPENILAVTGT---SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 89 ~~p~i~V~d~~~a----L~~la~~~---~~~~~~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
..+++.++++... +..|-..+ ....+.++|.||++ .||||++.-++..|.+.|+++..+
T Consensus 71 ~~~~~~~~~p~s~~aEa~R~lrt~l~~~~~~~~~kvI~VtS~~~G~GKTtva~nLA~~lA~~GkrVLLI 139 (299)
T 3cio_A 71 NIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCHHHHSTTCHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 873478769998899999999999876427999859999779999988999999999999779968999
No 28
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.80 E-value=0.038 Score=31.72 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCCEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 2002245654--30652000123333321023222223
Q gi|254781102|r 113 HPENILAVTG--TSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 113 ~~~~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
...|+|+|+| -.|||||+--++..|.+.|+++..+-
T Consensus 39 ~~akiIAVaGKGGVGKTTtsvNLA~aLA~~GkrVLlID 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77439999899875799999999999998799499981
No 29
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=90.75 E-value=0.23 Score=26.65 Aligned_cols=78 Identities=8% Similarity=0.013 Sum_probs=53.5
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 57430024530231468988998038876768889999985988999847322333432234797099979989999999
Q gi|254781102|r 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 (497)
Q Consensus 26 ~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~l 105 (497)
.+..|++++. -...++|+|=|.- -.+|.+++-+-.|+++|++....... ......++|+++||+.++.++
T Consensus 43 ~~~~I~~i~~-l~~a~~~~isF~~------~~ky~~~l~~t~A~aviv~~~~~~~~---~~~~~~~~i~~~~p~~~fa~~ 112 (374)
T 2iu8_A 43 GATLLSGVEE-IEEAKTAHITFLD------NEKYAKHLKSSEAGAIIISRTQFQKY---RDLNKNFLITSESPSLVFQKC 112 (374)
T ss_dssp TTCEECEECC-TTTCCTTEEEECC------SSSTHHHHHTCCCSEEEEEHHHHHTS---TTSCSCEEEESSCHHHHHHHH
T ss_pred CCEEEECCCC-HHHCCCCCEEEEC------CHHHHHHHHHCCCEEEEECHHHHHHC---CCCCCCEEEEECCHHHHHHHH
T ss_conf 9808957749-6558998589988------88889998756987999551686441---133683799965989999999
Q ss_pred HHHHHCCC
Q ss_conf 99982762
Q gi|254781102|r 106 ASRLYGKH 113 (497)
Q Consensus 106 a~~~~~~~ 113 (497)
.+.|+...
T Consensus 113 ~~~f~~~~ 120 (374)
T 2iu8_A 113 LELFITPV 120 (374)
T ss_dssp HTTTSCCC
T ss_pred HHHHHHCC
T ss_conf 99852223
No 30
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.55 E-value=0.071 Score=29.98 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 00224565430---652000123333321023222223
Q gi|254781102|r 114 PENILAVTGTS---GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 114 ~~~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
..+++=||||+ ||||++.-|...|++.|++++.+-
T Consensus 25 ~M~~lfItGT~TgVGKT~Vs~~L~~aL~~~G~~V~~~K 62 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 59868998699996199999999999996899499977
No 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.42 E-value=0.19 Score=27.24 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 76200224565430---65200012333332102322222
Q gi|254781102|r 111 GKHPENILAVTGTS---GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 111 ~~~~~~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
...+.++|+||++. ||||++.-++..|.+.|.++.++
T Consensus 88 ~~~~~kvi~VtS~~~G~GKTtia~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 88 MQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 5999818999779999988999999999999779918998
No 32
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.77 E-value=0.045 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=23.7
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565430652000123333321023222223
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|++|+ |||||..=|++.+...|+++..+.
T Consensus 105 ~vG~~G~-GKTTTiaKLA~~~~~~~~kv~lva 135 (302)
T 3b9q_A 105 IVGVNGG-GKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EECCTTS-CHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EECCCCC-CHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 7579888-677499999999997699873211
No 33
>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} PDB: 3mle_A*
Probab=89.53 E-value=0.088 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.637 Sum_probs=28.9
Q ss_pred CEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 224565430---6520001233333210232222234
Q gi|254781102|r 116 NILAVTGTS---GKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
|.|=||||+ ||||++..|.+.|.+.|++++.+-.
T Consensus 2 k~ifItgT~t~vGKT~vs~~L~~~L~~~G~~V~~~KP 38 (220)
T 2qmo_A 2 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 38 (220)
T ss_dssp CEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7899997999987999999999999978996999766
No 34
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.03 E-value=0.12 Score=28.62 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=28.8
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 0224565430--652000123333321023222223
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+||+|+|.. ||||-.+-+-..|+..|++++.+-
T Consensus 6 ~pii~ivG~~~SGKTTLi~~li~~L~~~G~~V~~IK 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 027999906999899999999999997798288997
No 35
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.64 E-value=0.096 Score=29.15 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=28.2
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565---430652000123333321023222223
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|+|+ |-.|||||+.-|+..|.+.|+++..+.
T Consensus 19 ~~IaV~SgKGGvGKTT~a~NLA~aLA~~GkkVllvD 54 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 699997599988799999999999997799257647
No 36
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.07 E-value=0.097 Score=29.12 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCEEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 0224565--430652000123333321023222223
Q gi|254781102|r 115 ENILAVT--GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.++|+|+ |=.|||||+.-+++.|.+.|+++..+-
T Consensus 2 Mr~IaisGKGGVGKTT~a~nLA~aLA~~G~rVLlID 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 609999899987599999999999998799889994
No 37
>2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413}
Probab=87.88 E-value=0.033 Score=32.18 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=7.8
Q ss_pred HHHHHHHHCCEEEEC
Q ss_conf 999998619899990
Q gi|254781102|r 402 MGKIALDLADIAIVT 416 (497)
Q Consensus 402 mg~~a~~~ad~vi~t 416 (497)
++-+.+...|.+|+.
T Consensus 246 l~lL~Gs~Pd~lILc 260 (349)
T 2obn_A 246 LPLIRGSQPTQLVLV 260 (349)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHCCCCCCEEEEE
T ss_conf 765226699889995
No 38
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.67 E-value=0.33 Score=25.65 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCC-CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999982762-0022456543--0652000123333321023222223
Q gi|254781102|r 99 RKFLSLFASRLYGKH-PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 99 ~~aL~~la~~~~~~~-~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+..+.++....+... ...+|||||+ .||||..+-+...+...|.+++.+.
T Consensus 38 ~~~~~~l~~~~~~~~~~~~~IgItG~PGaGKSTLi~~L~~~~~~~g~kvavla 90 (337)
T 2qm8_A 38 RAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 89999999976420688259952389998899999999999743898311231
No 39
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.46 E-value=0.1 Score=28.95 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.3
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 022456543--0652000123333321023222223
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
..+|||||+ .||||...-+...+...|++++.+.
T Consensus 74 a~~IGitG~PGaGKStli~~l~~~~~~~g~~vaVla 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 058862179998899999999999984797178995
No 40
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.42 E-value=0.13 Score=28.22 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 00224565430--652000123333321023222223
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
..|+|+|+|.. ||||..+-|..-|+..|++++.+-
T Consensus 3 ~mki~~I~G~~gSGKTTLi~~Li~~L~~~G~~V~~iK 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7659999819999899999999999997699056774
No 41
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.14 E-value=0.24 Score=26.50 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHHHHHHH---CCCCCCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999982---7620022456543---0652000123333321023222223
Q gi|254781102|r 101 FLSLFASRLY---GKHPENILAVTGT---SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 101 aL~~la~~~~---~~~~~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++..+..... ...+.++|+||++ .||||++.-++..|...|+++..+-
T Consensus 65 ~~r~l~~~l~~~~~~~~~kvI~vtS~~~g~GKTtia~nLA~~lA~~G~rVLlID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999987763479998599997489989889999999999997699499993
No 42
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.19 E-value=0.1 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.0
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|++| .|||||..-++..+...|+++..+.
T Consensus 104 vG~~G-~GKTTT~aKLA~~~~~~g~kv~lva 133 (425)
T 2ffh_A 104 VGLQG-SGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp ECCTT-SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ECCCC-CCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 66788-7610089999999986398368984
No 43
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.72 E-value=0.21 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=24.9
Q ss_pred HHHHCCCCCC-EEEEEEEE--CCCEEHHHHHHHHHHCC
Q ss_conf 9982762002-24565430--65200012333332102
Q gi|254781102|r 107 SRLYGKHPEN-ILAVTGTS--GKSSVASFVQQICQRSG 141 (497)
Q Consensus 107 ~~~~~~~~~~-vIgITGTn--GKTTt~~~l~~iL~~~g 141 (497)
..+|.++..+ ||||||.. ||||.+..|+..|...+
T Consensus 16 ~~~~~~~~kP~IIgI~G~~gSGKSTla~~L~~~l~~~~ 53 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 68862899958999889898889999999999856154
No 44
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=85.57 E-value=1.6 Score=21.21 Aligned_cols=125 Identities=12% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCC-HHHHHHHH-HHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEC--
Q ss_conf 999974121100234440354026654600-46899999-98619899990887989898999999983479809978--
Q gi|254781102|r 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-- 443 (497)
Q Consensus 368 s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~-kr~~mg~~-a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~-- 443 (497)
.++...+...+-.++|.-+.+.-+|.-... -|..++.- ++-..|.+ +++-+..|+.+++...+.-..+++++
T Consensus 581 ~LR~~~da~~~~~GrrPkv~la~lG~~~h~~~ra~fA~~f~~~Gf~V~----~~~~f~tpee~a~aa~es~a~vv~ics~ 656 (727)
T 1req_A 581 EARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVD----VGPLFQTPEETARQAVEADVHVVGVSSL 656 (727)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEE----ECCTTBCHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE----CCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999996599966999817842434359999999985896175----4888899999999999769999999178
Q ss_pred C--H---HHHHHHHHHHCCCCCE-EEEECC-CCCCCEEEC-CCEECC----CCHHHHHHHHHHHH
Q ss_conf 9--8---9999999996589889-999446-886635844-978867----99899999984430
Q gi|254781102|r 444 N--R---IEAIRTAIEMLNKQDV-LVVAGK-GHETVHIVT-NGEKKM----SVDCDIIREILGLI 496 (497)
Q Consensus 444 d--r---~eAi~~A~~~a~~gDv-ili~Gk-G~e~~~~~~-~~~~~~----~~d~~~~~~~l~~~ 496 (497)
| . ..++..+++.+...++ |++.|+ -.|+++... .|..-. ..-.+.++++|++|
T Consensus 657 d~~y~~~vp~l~~~Lk~ag~~~i~VilgG~iP~~d~~~L~~aGV~~if~pgtni~~~~~~~l~~~ 721 (727)
T 1req_A 657 AGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp SSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 74558899999999996799885799807788787999997798868489980999999999999
No 45
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=84.81 E-value=0.23 Score=26.69 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.|+.||+|||.- ||||++.+++.-+..
T Consensus 9 ~pk~II~ItG~~GSGKsTva~~L~e~~~~ 37 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98389998897999999999999997299
No 46
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=84.79 E-value=0.5 Score=24.48 Aligned_cols=34 Identities=35% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456543--065200012333332102322222
Q gi|254781102|r 114 PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
...+|||||+ .||||..+-+..-+...|.+++.+
T Consensus 55 ~~~~IgItG~PGaGKSTLi~~L~~~~~~~~~~vavl 90 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 852897328999989999999999986168860144
No 47
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.45 E-value=0.2 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=26.9
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.|+|+|+ |-.||||++..++..|...|+++..+
T Consensus 2 ~kvIav~s~kGGvGKTT~a~nLA~~la~~g~~Vlli 37 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 839999899999709999999999999789989999
No 48
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=84.44 E-value=0.12 Score=28.56 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=24.8
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 22456543--0652000123333321023222223
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+|.+.|- .|||||..=+++.+...|+++..+.
T Consensus 98 ~Vi~lvG~~G~GKTTTiaKLA~~~~~~g~kV~lva 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 79999747888701349999999986598158984
No 49
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.23 E-value=0.26 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.1
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCC
Q ss_conf 24565430--65200012333332102
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSG 141 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g 141 (497)
+|||||.. ||||.+..|+..|...+
T Consensus 24 IIgItG~~gSGKSTla~~L~~~l~~~~ 50 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999889898859999999999966123
No 50
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=84.21 E-value=0.22 Score=26.85 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=26.5
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.||||+|-| ||||....+...|...+.++...|
T Consensus 3 ~Ii~ivG~nGsGKTTLl~~l~g~l~~~~g~V~~~g 37 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK 37 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 59999859998899999999710277997799941
No 51
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.09 E-value=0.24 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=27.5
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565---430652000123333321023222223
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
|+|+|+ |-.||||++.-++..|...|+++.++-
T Consensus 3 kvI~v~s~KGGvGKTtia~nlA~~la~~g~kVlliD 38 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 699998999987199999999999996899899995
No 52
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=83.93 E-value=0.31 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 620022456543--06520001233333210232222234
Q gi|254781102|r 112 KHPENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 112 ~~~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
++..++|-+||- .|||||+.-++..|.+.|+++-.+.+
T Consensus 16 ~~~~r~i~~~GKGGVGKTT~a~~lA~~lA~~G~rVLlvd~ 55 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7771699996998682999999999999968991899958
No 53
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.88 E-value=0.15 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.9
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|+|| .|||||..=++..+...|+++..+.
T Consensus 106 vG~~G-~GKTTT~aKLA~~~~~~g~kv~lva 135 (443)
T 3dm5_A 106 VGIQG-SGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp ECCTT-SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ECCCC-CCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 66788-9723279999999997699424653
No 54
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.27 E-value=0.28 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=25.9
Q ss_pred CEEEEE--EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565--43065200012333332102322222
Q gi|254781102|r 116 NILAVT--GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+.|+|. |-.||||++.-++..|.+.|+++..+
T Consensus 2 ~~Iai~gKGGVGKTT~a~nLA~~La~~G~rVLlI 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7999989998769999999999999789978999
No 55
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=83.10 E-value=0.24 Score=26.59 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=25.6
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.|||+|+ |-.||||++.-++..|.+ |+++..+
T Consensus 27 ~kvI~v~s~KGGVGKTT~a~nLA~~la~-g~rVllI 61 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLSK-NNKVLLI 61 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 9799998999975899999999999987-9988999
No 56
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=82.82 E-value=0.35 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 022456543--065200012333332102322222
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.++|-++|- .||||++..++..|.+.|+++..+
T Consensus 8 ~~~i~~sGKGGvGKTTvaa~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 84899989960079999999999999689989999
No 57
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.13 E-value=0.39 Score=25.20 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 022456543---0652000123333321023222223
Q gi|254781102|r 115 ENILAVTGT---SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.++|+|++. .||||++..++..|...|+++..+.
T Consensus 143 ~kvI~V~S~kGGvGKTT~A~~LA~~LA~~g~kVLliD 179 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8799998999995199999999999983899599993
No 58
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=80.29 E-value=0.29 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 0224565---430652000123333321023222223
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.|+|+|+ |=.||||++.-++..|...|+++..+-
T Consensus 6 ~k~I~v~s~KGGvGKTTia~nlA~~La~~g~~VllID 42 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7699998699987699999999999997799889996
No 59
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=79.72 E-value=1 Score=22.49 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHCCEEEEC
Q ss_conf 4433455210001355786023000378689999741211002344403540266546004689999998-619899990
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVT 416 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~-~~ad~vi~t 416 (497)
.++|+|+|..+|-+.........+...--.+++.++..++.....+ |.|+| |.. ...+... .++|.+++|
T Consensus 115 ~~rPLp~R~NIVLSr~~~~~~~~~~v~v~~Sleeal~~l~~~~~~~-IfVIG--G~~------IY~~~L~~~lid~IyLT 185 (280)
T 1j3k_A 115 KFKPLSNRINVILSRTLKKEDFDEDVYIINKVEDLIVLLGKLNYYK-CFILG--GSV------VYQEFLEKKLIKKIYFT 185 (280)
T ss_dssp GGCSCTTSEEEEECSSCCGGGCCSSCEEESSHHHHHHHHHHSCCSC-EEECC--CHH------HHHHHHHTTCCSEEEEE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHCCCC-EEEEC--HHH------HHHHHHCCCCCCEEEEE
T ss_conf 3578999708999457532347999899868999999986414663-79976--899------99998514327989999
Q ss_pred C
Q ss_conf 8
Q gi|254781102|r 417 D 417 (497)
Q Consensus 417 ~ 417 (497)
.
T Consensus 186 ~ 186 (280)
T 1j3k_A 186 R 186 (280)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 60
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=79.44 E-value=0.96 Score=22.64 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHCCC-CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999982762-0022456543--0652000123333321023222223
Q gi|254781102|r 104 LFASRLYGKH-PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 104 ~la~~~~~~~-~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++....+... ...+|||||. .||||..+-+..-+...|.+++.+.
T Consensus 67 ~~l~~~~~~~~~~~rIgItG~PGaGKSTLi~~L~~~~~~~g~~Vavla 114 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999987301689759974289999899999999999986488656884
No 61
>3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum}
Probab=78.47 E-value=1.1 Score=22.18 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 8999974121100234440354
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVVF 388 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V~ 388 (497)
|-+..+++.|+.-+..|.+++-
T Consensus 454 DQl~~vI~~Lk~nP~sRR~iis 475 (608)
T 3jsu_A 454 DQLKNIINLIKNDPTSRRILLC 475 (608)
T ss_dssp CHHHHHHHHHHHCTTCSCCEEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8899999997409677826653
No 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.43 E-value=1.3 Score=21.72 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCC-CC-EEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 9999999999827620-02-24565430--652000123333321
Q gi|254781102|r 99 RKFLSLFASRLYGKHP-EN-ILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 99 ~~aL~~la~~~~~~~~-~~-vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
...+......++.... .+ +|||+|.- ||||++..|...|.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~P~iIgiaG~~GSGKSTla~~l~~~l~~ 57 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999973458999989996789878899999999999997
No 63
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=78.06 E-value=0.67 Score=23.68 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=26.2
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+|.+.|-| |||||..=++..|...|+++..+.
T Consensus 100 ~VIllvGl~GsGKTTT~aKLA~~l~~~g~kv~lva 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 69998579877621489999999997799742442
No 64
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.27 E-value=0.59 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 0224565430--65200012333332102322
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
.++|+|+|.. ||||.+..|+..|...+..+
T Consensus 3 ~~iI~i~G~~GsGKTT~~~~L~~~l~~~~~~~ 34 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 34 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999598999999999987659976
No 65
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A*
Probab=77.01 E-value=1.2 Score=22.04 Aligned_cols=72 Identities=28% Similarity=0.357 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCEE--EECCCCCHHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 3443345521000135578602--300037868999974121100----2344403540266546004689999998619
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~v--iiDyahNP~s~~~aL~~l~~~----~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~a 410 (497)
..|+|+|+|..+|-+....... .-+...-..|+..+|+.++.. ...+.|.|+| |. .+=+.+..++
T Consensus 64 ~~~rPLp~R~niVlSr~~~~~~~~~~~~~~~~~sl~~al~~l~~~~~~~~~~~~IfVIG--G~-------~IY~~~l~~~ 134 (227)
T 3cse_A 64 QKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIG--GG-------EIYRQSMDLA 134 (227)
T ss_dssp GGGCSCTTSEEEEECTTSSSSCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECC--CH-------HHHHHHTTTC
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC--CH-------HHHHHHHHHC
T ss_conf 55677899748997247772223576866993748999999888888607997299989--99-------9999998668
Q ss_pred CEEEECC
Q ss_conf 8999908
Q gi|254781102|r 411 DIAIVTD 417 (497)
Q Consensus 411 d~vi~t~ 417 (497)
|.+++|-
T Consensus 135 d~i~lT~ 141 (227)
T 3cse_A 135 DHWLITK 141 (227)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
T ss_conf 9899999
No 66
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=74.42 E-value=0.61 Score=23.93 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=17.5
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHH
Q ss_conf 22456543--06520001233333
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQIC 137 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL 137 (497)
++|||||. .||+|++.++..-+
T Consensus 2 ~iIgltG~~gSGKsTva~~L~e~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799977999888999999999975
No 67
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.33 E-value=0.82 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=17.1
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 2456543--065200012333332102322222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|.+.|- .|||||..=++..+...|+++..+
T Consensus 106 vi~~vG~~G~GKTTT~aKLA~~~~~~~~kv~lv 138 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 999977888984315999999998579848998
No 68
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=73.54 E-value=1.9 Score=20.72 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=9.7
Q ss_pred CCCCCCCEEEEECCCCC
Q ss_conf 31468988998038876
Q gi|254781102|r 38 RHIQAGWIFVAIVGNKE 54 (497)
Q Consensus 38 r~v~~g~lFval~G~~~ 54 (497)
+.++|||.-+=-+|.-.
T Consensus 39 ~~a~PGDtI~l~~G~Y~ 55 (506)
T 1dbg_A 39 KEVKPGGLVQIADGTYK 55 (506)
T ss_dssp HHCCTTCEEEECSEEEE
T ss_pred HCCCCCCEEEECCCEEE
T ss_conf 70899999998996987
No 69
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=73.24 E-value=1 Score=22.51 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCCCEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2002245654--306520001233333210232222234
Q gi|254781102|r 113 HPENILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 113 ~~~~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
...++|-++| =.||||++.-++..|...|+++..+..
T Consensus 14 ~~~r~if~sGKGGVGKTT~aanlA~~lA~~G~rVLlvD~ 52 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 885699997999771999999999999978994899938
No 70
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=72.41 E-value=1.1 Score=22.25 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 456543065200012333332102322222
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|++| .|||||..=++..+...|+++..+
T Consensus 105 vG~nG-~GKTTTiaKLA~~~~~~~~~V~lv 133 (309)
T 2qy9_A 105 VGVNG-VGKTTTIGKLARQFEQQGKSVMLA 133 (309)
T ss_dssp ECCTT-SCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ECCCC-CCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 65766-676550789999998567761486
No 71
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=72.38 E-value=0.69 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=18.9
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 224565430--652000123333321023222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
.+|||||.. ||||++.++ +..|..+.
T Consensus 3 ~iIgitG~igSGKStv~~~l----~~~G~~vi 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF----TDLGVPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH----HTTTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEEE
T ss_conf 89998899876699999999----98899699
No 72
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=72.12 E-value=0.74 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=18.1
Q ss_pred HCCCCCCEEEEEEEE--CCCEEHHHHHH
Q ss_conf 276200224565430--65200012333
Q gi|254781102|r 110 YGKHPENILAVTGTS--GKSSVASFVQQ 135 (497)
Q Consensus 110 ~~~~~~~vIgITGTn--GKTTt~~~l~~ 135 (497)
+...+.=+|||||.- ||||++.++..
T Consensus 7 ~~~~~~mIIgiTG~igSGKStv~~~l~~ 34 (192)
T 2grj_A 7 HHHHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 2255777999878987889999999988
No 73
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=71.97 E-value=0.94 Score=22.71 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=23.5
Q ss_pred EEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565---43065200012333332102322222
Q gi|254781102|r 117 ILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
||+|+ |=.||||++-.|+..|...| ++..+
T Consensus 2 vI~v~s~KGGvGKTT~a~nLA~~La~~G-kVlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCC-CEEEE
T ss_conf 8999829998749999999999999689-98999
No 74
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima}
Probab=71.94 E-value=1.3 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=30.9
Q ss_pred HCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 276200224565430------6520001233333210232222
Q gi|254781102|r 110 YGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 110 ~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
-.++..|+|-||+.| |||||+==|.+.|...|+++..
T Consensus 38 ~~~~~gklilVTaitPTp~GEGKtTttiGL~~aL~~~gk~~~~ 80 (543)
T 3do6_A 38 ENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp TTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 1389963999973588888888520089899998752874379
No 75
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=71.80 E-value=1.9 Score=20.74 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 8276200224565430------6520001233333210232222
Q gi|254781102|r 109 LYGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 109 ~~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
...++..|+|-||+-+ |||||+-=|.+.|...|+++..
T Consensus 51 ~~~~~~gklilVtaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 94 (557)
T 1eg7_A 51 LKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp HTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 12389970899984588887886030799999999870985389
No 76
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=71.74 E-value=0.8 Score=23.16 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCEEEEE---EEECCCEEHHHHHHHHHHC-CCCCCCC
Q ss_conf 00224565---4306520001233333210-2322222
Q gi|254781102|r 114 PENILAVT---GTSGKSSVASFVQQICQRS-GLSSFQI 147 (497)
Q Consensus 114 ~~~vIgIT---GTnGKTTt~~~l~~iL~~~-g~~~~~~ 147 (497)
..|+|+|+ |-.||||++.-++..|... |.++..+
T Consensus 3 ~~riI~v~s~kGGvGkTt~a~nlA~~La~~~~~~vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98799998999976599999999999998689989999
No 77
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=71.54 E-value=0.86 Score=22.96 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=17.9
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 224565430--65200012333332102322
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
-+|||||.. ||||++.++ +..|..+
T Consensus 9 ~iIgItG~~GSGKsTva~~l----~~~g~~~ 35 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL----RSWGYPV 35 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH----HHTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEE
T ss_conf 89999899877699999999----9879939
No 78
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=70.64 E-value=0.97 Score=22.62 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=18.8
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 224565430--652000123333321023222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
+.|||||.. ||||++.++ +..|.++.
T Consensus 2 ~kIgItG~iGSGKSTv~~~l----~~~G~~vi 29 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMF----RELGAYVL 29 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHH----HHTTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEEE
T ss_conf 49999799977799999999----98799399
No 79
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=70.58 E-value=1.1 Score=22.18 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=23.1
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 224565430--65200012333332102322
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
++|.|+|.. ||||++..|+..|...+...
T Consensus 2 kiivi~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 2999989999798999999999998759977
No 80
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.36 E-value=0.86 Score=22.96 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 224565430--652000123333321023222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
.+|||||.- ||||++.++ +..|.++.
T Consensus 5 ~IIgItG~igSGKStva~~l----~~~G~~vi 32 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF----ADLGINVI 32 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCCEE
T ss_conf 69998798878799999999----98799199
No 81
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=70.24 E-value=1.6 Score=21.25 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEEE--ECCCEEHHHHHH--HHHHCCCCCCCCCC
Q ss_conf 7620022456543--065200012333--33210232222234
Q gi|254781102|r 111 GKHPENILAVTGT--SGKSSVASFVQQ--ICQRSGLSSFQIGP 149 (497)
Q Consensus 111 ~~~~~~vIgITGT--nGKTTt~~~l~~--iL~~~g~~~~~~g~ 149 (497)
...+.++|-|+|- .||||++..++. .|...|+++..+.+
T Consensus 14 ~~~~~r~i~~sGKGGvGKTT~a~~lA~~lalA~~G~rVLlvD~ 56 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7888459999689857299999999999999958991999948
No 82
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function, NPPSFA; 2.60A {Thermus thermophilus HB8}
Probab=70.18 E-value=4.7 Score=18.19 Aligned_cols=68 Identities=13% Similarity=0.285 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 976787866789887320335565557430024530231468988998038876768889999985988999847322
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~ 78 (497)
||+++|+.- +.+...- ...+ .|-.-+|+..++++ +-..+++|+.- ..+-+++|+++||-++|+-.+.-
T Consensus 1 M~~~ei~~~-l~~~~~~-~~~~---~d~d~~GL~v~~~~-~V~kI~~alD~----t~~vi~~Ai~~g~dlIItHHP~~ 68 (242)
T 2yyb_A 1 MDRDELVRY-LDAYLRI-QDFP---QDPSLNGLQVEGKR-TVRKVGAAVDA----GEAIFRKALEEEVDFLIVHHGLF 68 (242)
T ss_dssp CBHHHHHHH-HHHHTTG-GGCT---TCSSCCEEEECCCS-BCCCEEEEEEC----SHHHHHHHHHTTCSEEEEEECSC
T ss_pred CCHHHHHHH-HHHHCCH-HHCC---CCCCCCEEEECCCC-CCCEEEEEECC----CHHHHHHHHHCCCCEEEECCCCC
T ss_conf 908999999-9865897-4504---04687635877987-64889999759----99999999987999999798501
No 83
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.01 E-value=1.8 Score=20.88 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 22456543--065200012333332102322222
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.||.+.|- .|||||..=++.-+...|+++..+
T Consensus 130 ~Vi~~vG~~G~GKTTt~aKlA~~~~~~g~kv~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 6999976877886543899999999669960576
No 84
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=69.46 E-value=1.9 Score=20.79 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.6
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHH------CCCCCCCC
Q ss_conf 0224565---430652000123333321------02322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQR------SGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~------~g~~~~~~ 147 (497)
.+||+|+ |-.|||||+-.+++.|.. .|+++..+
T Consensus 111 ~~VIav~n~KGGvGKTT~avnLA~~LA~~~~~~~~G~rVLlI 152 (403)
T 3ez9_A 111 PYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEE
T ss_conf 769999681772079999999999998431566589968999
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=68.94 E-value=1.3 Score=21.80 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 6200224565430--65200012333332102322
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
....-+|.+||-. ||||.+..|+.-|...+..+
T Consensus 10 ~~kg~iI~itG~~GSGKSTlAk~La~~L~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 58995999899999999999999999984238971
No 86
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.40 E-value=1.3 Score=21.86 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=20.9
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 22456543--065200012333332102322222
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
++|.+.|- .|||||..=++..+...|+++..+
T Consensus 106 ~villvG~~G~GKTTTiaKLA~~~~~~g~kV~lv 139 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7999977878870528999999998739974033
No 87
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=68.20 E-value=0.78 Score=23.23 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.4
Q ss_pred CEEEE---EEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 22456---5430652000123333321023222223
Q gi|254781102|r 116 NILAV---TGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+|+| =|=.||||++..++..|...|+++..+-
T Consensus 37 ~ii~v~s~KGGvGKTT~a~nlA~~LA~~G~rVllID 72 (298)
T 2oze_A 37 IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999975898981899999999999997799089994
No 88
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=67.33 E-value=1.4 Score=21.67 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=19.5
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 224565430--652000123333321
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-+|+|+|-- ||||.+.+|+.-|..
T Consensus 22 ~iI~I~G~~GSGKTTla~~L~~~l~~ 47 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPN 47 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 99999898988599999999998599
No 89
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=67.24 E-value=2.2 Score=20.36 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEEE--ECCCEEHHHHHHHHH--HCCCCCCCCCC
Q ss_conf 7620022456543--065200012333332--10232222234
Q gi|254781102|r 111 GKHPENILAVTGT--SGKSSVASFVQQICQ--RSGLSSFQIGP 149 (497)
Q Consensus 111 ~~~~~~vIgITGT--nGKTTt~~~l~~iL~--~~g~~~~~~g~ 149 (497)
.....|+|-++|- .||||++..++..|. ..|+++..+.+
T Consensus 14 ~~~~~r~i~~sGKGGVGKTT~a~~lA~~LA~~~~G~rVLlvD~ 56 (354)
T 2woj_A 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp TCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6788379999799988099999999999998658995999979
No 90
>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=65.57 E-value=1.8 Score=20.91 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=42.1
Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCH-HHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3000378689999741211002344403540266546004-689999998619899990887989898999999983479
Q gi|254781102|r 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 (497)
Q Consensus 359 iiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~k-r~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~ 437 (497)
..||. ..+++.++-...+ ....+++|=|=|.=.--+- -.-++=+.+...|.+|+.-+-.|- -..+.+
T Consensus 225 ~~DFv--aGavE~~Vl~~~~-~~~d~iiIEGQGSL~hP~ys~vtl~LL~Gs~Pd~lIL~H~p~R~---------~~~~~p 292 (350)
T 2g0t_A 225 PADFV--SGVVEKAVLKLEK-TGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRD---------HFESFP 292 (350)
T ss_dssp BGGGH--HHHHHHHHHHHHH-TTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCS---------SCTTCT
T ss_pred HHHHH--HHHHHHHHHCHHC-CCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCC
T ss_conf 56667--8999997734112-79987998885541267653246998705699879995068873---------004786
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEE
Q ss_conf 8099789899999999965898899
Q gi|254781102|r 438 GFIEKGNRIEAIRTAIEMLNKQDVL 462 (497)
Q Consensus 438 ~~~~~~dr~eAi~~A~~~a~~gDvi 462 (497)
.+..+++.++-++. ++...+..+|
T Consensus 293 ~~p~iP~l~~~i~l-ie~l~~~~vv 316 (350)
T 2g0t_A 293 EIPKKPDFEEERRL-IETLSNAKVI 316 (350)
T ss_dssp TSSCCCCHHHHHHH-HHHSSSCEEE
T ss_pred CCCCCCCHHHHHHH-HHHHCCCCEE
T ss_conf 45789899999999-9860799779
No 91
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=65.54 E-value=3 Score=19.47 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHCCCCCCC--CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 887320335565--557430024530231468988998038876768889999985988999847322333432234797
Q gi|254781102|r 13 ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 (497)
Q Consensus 13 ~~~~~~~~~~~~--~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~ 90 (497)
+++..-.-.|+. -.+.+..+|..+ .....|.+| .++= ..+=.+-...-++.|-...+.+..-. -+
T Consensus 21 ell~~G~fsPL~gFM~~~d~~sVl~~-~rL~~G~~~-piPI-~L~v~~e~~~~~~~g~~i~L~~~~g~----------~v 87 (546)
T 2gks_A 21 ELLAVGAFTPLDRFMGEEDYRNVVES-MRLKSGTLF-PIPI-TLPMEKEIAKDLKEGEWIVLRDPKNV----------PL 87 (546)
T ss_dssp HHHHTTTTTTCCSSCCHHHHHHHHHH-SBCTTSCBC-CSCC-CEEECHHHHTTCCTTCEEEEECTTCC----------EE
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCC-CEEE-EEECCHHHHHHCCCCCEEEEECCCCC----------EE
T ss_conf 99957974697788899999999983-987789887-8778-98689999941789998999989998----------78
Q ss_pred CEEEECCHHHH-HHHHHHHHHCC
Q ss_conf 09997998999-99999998276
Q gi|254781102|r 91 PILVVDNTRKF-LSLFASRLYGK 112 (497)
Q Consensus 91 p~i~V~d~~~a-L~~la~~~~~~ 112 (497)
.++.|+|..+. ..+.|+..|+-
T Consensus 88 a~l~v~~vf~~dk~~~a~~ifgT 110 (546)
T 2gks_A 88 AIMRVEEVYKWNLEYEAKNVLGT 110 (546)
T ss_dssp EEEECCEEEECCHHHHHHHHHSC
T ss_pred EEEEEEEEECCCHHHHHHHHHCC
T ss_conf 99984267458889999987089
No 92
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=65.32 E-value=4.4 Score=18.36 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEE-C--CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHH-HHHCCE
Q ss_conf 344334552100013557860230-0--037868999974121100234440354026654600468999999-861989
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYV-D--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADI 412 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~vii-D--yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a-~~~ad~ 412 (497)
..++|+|+|..+|-+......-.- + ..++ +..++..++.....+ |.|.| |.. ...+.. ..++|.
T Consensus 123 ~~~rPLP~R~NIVlSr~~~~~~~~~~~~v~~s---leeal~~~~~~~~~~-IfIIG--G~~------IY~~~L~~~~~d~ 190 (238)
T 2bl9_A 123 KQYKPLPNRINVVLSKTLTKEDVKEKVFIIDS---IDDLLLLLKKLKYYK-CFIIG--GAQ------VYRECLSRNLIKQ 190 (238)
T ss_dssp GGGCSCTTEEEEEECSSCCTTTCCSSCEEESC---HHHHHHHHHTCCCSC-EEEEE--CHH------HHHHHHHTTCCSE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCEEEECC---HHHHHHHHHCCCCCE-EEEEC--CHH------HHHHHHHHCCCCE
T ss_conf 23677999738999324411246773799747---888435665077664-99974--799------9998866301788
Q ss_pred EEECC
Q ss_conf 99908
Q gi|254781102|r 413 AIVTD 417 (497)
Q Consensus 413 vi~t~ 417 (497)
+++|.
T Consensus 191 iylT~ 195 (238)
T 2bl9_A 191 IYFTR 195 (238)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99998
No 93
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=64.36 E-value=1.8 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+.++|-|+|.. ||||++..|++-|..
T Consensus 4 ~~~iI~i~G~sGsGKSTva~~La~~l~~ 31 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8808999999883499999999998399
No 94
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=63.74 E-value=1.9 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=10.7
Q ss_pred ECCCCHHHHHHHHHHH
Q ss_conf 8679989999998443
Q gi|254781102|r 480 KKMSVDCDIIREILGL 495 (497)
Q Consensus 480 ~~~~~d~~~~~~~l~~ 495 (497)
..+|+-+..++.+||.
T Consensus 279 l~~~~~~~~~~~llG~ 294 (295)
T 1ls1_A 279 LEPFYPERLAGRILGM 294 (295)
T ss_dssp CEECCHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHCC
T ss_conf 6528999999997389
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=63.70 E-value=1.7 Score=21.01 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.4
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCC
Q ss_conf 224565430--65200012333332102
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSG 141 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g 141 (497)
+-|.|||-+ ||||....+..+|+..+
T Consensus 2 khi~I~G~~GsGKTTL~~~l~~~l~~~~ 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 8999989998229999999986616996
No 96
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=63.04 E-value=3.5 Score=18.98 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=21.7
Q ss_pred EEEEEEECCCEEHHHHHHHHHH-CCCCCCCCC
Q ss_conf 4565430652000123333321-023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~-~g~~~~~~g 148 (497)
+|++| .|||||..=+++-|.. .|+++..+.
T Consensus 105 VGvnG-sGKTTTiaKLA~~~k~k~~kkVllva 135 (430)
T 2j28_9 105 AGLQG-AGKTTSVGKLGKFLREKHKKKVLVVS 135 (430)
T ss_dssp ECSSS-SSSTTTHHHHHHHHHTSSSCCCCBCC
T ss_pred ECCCC-CCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 75689-98554299999999994798589995
No 97
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=62.82 E-value=2.6 Score=19.89 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565430--65200012333332102322222
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.++|.|.|-. ||||.+..|+..|+..|..+..+
T Consensus 10 g~~I~ieG~dGsGKtT~~~~L~e~L~~~g~~v~~~ 44 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 85999989988899999999999998779966899
No 98
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=60.35 E-value=2.1 Score=20.47 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=18.3
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 22456543--065200012333332102322
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
.+||+||. .||||++.++. ..|..+
T Consensus 76 ~IIGLTGgigSGKStva~~L~----~~G~~v 102 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK----NLGAYI 102 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH----HHTCEE
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCCE
T ss_conf 899987887521999999999----879969
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.65 E-value=1.9 Score=20.75 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=18.1
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 224565430--65200012333332102322
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
++|+|||.. ||||.+.+++ +.|..+
T Consensus 2 kiI~l~G~~GSGKsTva~~L~----~~g~~~ 28 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLK----ERGAKV 28 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHH----HTTCEE
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCEE
T ss_conf 799998999988999999999----879929
No 100
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=58.37 E-value=2.4 Score=20.04 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=19.8
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 0224565430--65200012333332
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-+|+|+|.. ||||.+.+|+.-|.
T Consensus 14 ~~iItI~g~~GsGKsTia~~LA~~Lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 97998579998997999999999949
No 101
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis}
Probab=57.30 E-value=8 Score=16.66 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHCCCEEEEECC
Q ss_conf 768889999985988999847
Q gi|254781102|r 55 DGHLFIPQAIAQGAEAIVVSS 75 (497)
Q Consensus 55 dGh~fi~~A~~~GA~~~i~~~ 75 (497)
=|..-+....+.||..+++.+
T Consensus 45 IG~aiA~~la~~Ga~Vvi~~r 65 (293)
T 3grk_A 45 IAWGIAKAAREAGAELAFTYQ 65 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999986999999838
No 102
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A*
Probab=56.50 E-value=4.1 Score=18.53 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHCCEEEEC
Q ss_conf 4433455210001355786023000378689999741211002344403540266546004689999998-619899990
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVT 416 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~-~~ad~vi~t 416 (497)
.++|+|+|..+|-+.........+....-.+++.+++.++.. .+ +.|+| |.. ...+... .++|.+++|
T Consensus 65 ~~rPLp~R~niVlSr~~~~~~~~~~v~~~~s~~~al~~~~~~--~~-i~ViG--G~~------IY~~~l~~~~~d~l~iT 133 (192)
T 1aoe_A 65 KFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDV--ER-VFIIG--GAE------IYNELINNSLVSHLLIT 133 (192)
T ss_dssp GGCSCTTSEEEEECTTCCCEEEETTEEEESSHHHHHHTCCSE--EE-EEECC--CHH------HHHHHTTSTTEEEEEEE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHCCC--CE-EEEEC--CHH------HHHHHHCCCCCCEEEEE
T ss_conf 444679975899962563454543047748899999885289--62-99988--999------99998456578989999
Q ss_pred C
Q ss_conf 8
Q gi|254781102|r 417 D 417 (497)
Q Consensus 417 ~ 417 (497)
.
T Consensus 134 ~ 134 (192)
T 1aoe_A 134 E 134 (192)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 103
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.44 E-value=8.3 Score=16.57 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=17.6
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 456543065200012333332102322222
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|++| .|||||..=++..+...|+++..+
T Consensus 104 vG~~G-~GKTTt~aKLA~~~~~~g~kv~l~ 132 (297)
T 1j8m_F 104 VGVQG-TGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp ECSSC-SSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred ECCCC-CCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 46766-662037999999999679764112
No 104
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=55.61 E-value=8.5 Score=16.48 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=50.9
Q ss_pred EEECC--CCCHHHHHHHHHHHHHCCCCCCCE--EEECCC-CC-CCCHHHHHHHHHHHH-CC-EEEECCCCCCCCCHHHHH
Q ss_conf 23000--378689999741211002344403--540266-54-600468999999861-98-999908879898989999
Q gi|254781102|r 358 IYVDY--AHTSNSLEMILKNIRTITSGRIIV--VFGCGG-DR-DQGKRPIMGKIALDL-AD-IAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 358 viiDy--ahNP~s~~~aL~~l~~~~~~r~i~--V~G~~G-dr-d~~kr~~mg~~a~~~-ad-~vi~t~d~~r~e~~~~I~ 429 (497)
-+.|+ +.+++.+..+++-+-.-+.-|.|+ ||| | -| |.--+ -+-+...+. .+ .+|+--..|+.|.-.+|+
T Consensus 292 NFlD~GG~a~~e~v~~a~~iil~d~~vk~iliNIfG--GI~~cd~vA~-GIi~A~~e~~~~vpivVRl~Gtn~~eg~~iL 368 (395)
T 2fp4_B 292 NFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFG--GIVNCAIIAN-GITKACRELELKVPLVVRLEGTNVHEAQNIL 368 (395)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEE--SSSCHHHHHH-HHHHHHHHHTCCSCEEEEEEETTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHHHH-HHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 156417888789999999999639998789999808--7303599999-9999999619998789999989989999999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHCCC
Q ss_conf 99983479809978989999999996589
Q gi|254781102|r 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458 (497)
Q Consensus 430 ~~i~~g~~~~~~~~dr~eAi~~A~~~a~~ 458 (497)
++ +|++ +....|..+|+++|++.++.
T Consensus 369 ~~--sgl~-i~~~~~l~~A~~kaV~~~~~ 394 (395)
T 2fp4_B 369 TN--SGLP-ITSAVDLEDAAKKAVASVTK 394 (395)
T ss_dssp HH--TCSC-CEECSSHHHHHHHHHHTTC-
T ss_pred HH--CCCC-EEEECCHHHHHHHHHHHHHC
T ss_conf 97--7997-48748999999999999636
No 105
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=55.58 E-value=2.1 Score=20.47 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..++||.|.| ||||.-.++.-++.
T Consensus 32 i~~Gei~~liG~NGsGKSTLl~~l~g~~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 85997999999999839999999966667
No 106
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.45 E-value=3 Score=19.44 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 2456543--065200012333332102322222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|+|.|- .||||...+|..-|++.|.++...
T Consensus 2 fI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899989988889999999999999779988997
No 107
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.38 E-value=3 Score=19.48 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHHCCCC
Q ss_conf 00224565430--6520001233333210232
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~ 143 (497)
...+|-+||.. ||||.+..|+..|...+..
T Consensus 4 ~G~~I~l~G~~GsGKSTia~~La~~L~~~~~~ 35 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 88799988999989999999999997445887
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.59 E-value=2.6 Score=19.81 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+.++|.++|.. ||||.+..++..|..
T Consensus 2 ~~~iI~l~G~~GsGKsTvA~~La~~l~~ 29 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9739999899999989999999998489
No 109
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=54.56 E-value=8.9 Score=16.37 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=11.3
Q ss_pred CCEEEEEEEE--CCCEEHHHHH
Q ss_conf 0224565430--6520001233
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ 134 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~ 134 (497)
..++.||.-- ||++..-|..
T Consensus 192 ~~~~vitAdRGRGKSaalGla~ 213 (671)
T 2zpa_A 192 PGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 7735876799985999999999
No 110
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=54.27 E-value=1.5 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565--430652000123333321023222223
Q gi|254781102|r 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
||-.| |=.||||++..++..|...|+++-.++
T Consensus 4 Ii~f~GKGGVGKTT~aa~lA~~lA~~G~rvLlvs 37 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999899877299999999999997899689996
No 111
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=53.92 E-value=3.5 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHC------CCCCCCC
Q ss_conf 0224565---4306520001233333210------2322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRS------GLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~------g~~~~~~ 147 (497)
..+|+|+ |-.|||||+-.+++.|... |+++..+
T Consensus 108 ~~vIav~n~KGGvGKTTttv~LA~~La~~~~la~~g~RVLlI 149 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 769999788898748999999999999720666469955985
No 112
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=53.78 E-value=3.4 Score=19.11 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 8999974121100234440354
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVVF 388 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V~ 388 (497)
+=+..+++.|+.-+..|.+++-
T Consensus 366 DQl~~vI~~lk~nP~sRR~ii~ 387 (521)
T 3hj3_A 366 DQLAKLIETLKNNPKDRRHILT 387 (521)
T ss_dssp CHHHHHHHHHHHSTTSSCCEEE
T ss_pred HHHHHHHHHHHHCCCCHHEEEE
T ss_conf 7999999998519842224765
No 113
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics consortium, SGC, aminopeptidase, cleavage on PAIR of basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB: 3n0t_A*
Probab=53.53 E-value=9.2 Score=16.27 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=64.5
Q ss_pred EEEEECCCCCCC--CCEEEEECCCCCC------HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC----CCCCEEEECCH
Q ss_conf 024530231468--9889980388767------68889999985988999847322333432234----79709997998
Q gi|254781102|r 31 NEVSSDSRHIQA--GWIFVAIVGNKED------GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR----SNTPILVVDNT 98 (497)
Q Consensus 31 ~~i~~DSr~v~~--g~lFval~G~~~d------Gh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~----~~~p~i~V~d~ 98 (497)
.....++...++ |-+|+-+.|+..= .--+.+-|-+-||..+..|..+..+..+.... .+..++ .+
T Consensus 32 QRY~~n~~~~~~~~gPifl~~gGE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yL---t~ 108 (469)
T 3jyh_A 32 QRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TV 108 (469)
T ss_dssp EEEEEECTTCCTTTCCEEEEECCSSCHHHHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTC---CH
T ss_pred EEEEEECCEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CH
T ss_conf 889994541259998689998997555325566648999999819919998501254775889987561125636---59
Q ss_pred HHHHHHHHHHHH------CCCCCCEEEEEEEECCCEEHHHHHHHHHHC
Q ss_conf 999999999982------762002245654306520001233333210
Q gi|254781102|r 99 RKFLSLFASRLY------GKHPENILAVTGTSGKSSVASFVQQICQRS 140 (497)
Q Consensus 99 ~~aL~~la~~~~------~~~~~~vIgITGTnGKTTt~~~l~~iL~~~ 140 (497)
.+||..+|.... .....++|.+-||.| -+|+.-++..
T Consensus 109 ~QALaD~a~Fi~~~~~~~~~~~~~wI~~GGSY~-----G~Laaw~R~k 151 (469)
T 3jyh_A 109 EQALADFAELLRALRRDLGAQDAPAIAFGGSYG-----GMLSAYLRMK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEEETHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCH-----HHHHHHHHHH
T ss_conf 999999999999998753777899899777735-----6788999986
No 114
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.24 E-value=3 Score=19.41 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=20.9
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
++.+++-++|.. ||||.+..|+.-|..
T Consensus 6 ~~~~i~~l~G~~GsGKST~a~~La~~l~~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99818999879999989999999999698
No 115
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown function; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=53.07 E-value=9.4 Score=16.22 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 976787866789887320335565557430024530231468988998038876768889999985988999847322
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~ 78 (497)
||++|++.... ++.. .+. ...|. =.|+..-++.-.-..+++|+.= -.+-+++|+++||..+|+-.+.-
T Consensus 5 Mk~~dii~~le-~~aP-~~l-Ae~WD---n~GL~vg~~~~~v~~IlvalD~----t~~vi~eAi~~~adlIitHHPli 72 (370)
T 2nyd_A 5 MKIADLMTLLD-HHVP-FST-AESWD---NVGLLIGDEDVEVTGVLTALDC----TLEVVNEAIEKGYNTIISHHPLI 72 (370)
T ss_dssp CBHHHHHHHHH-HHSC-GGG-SCTTC---CCEEEESCTTSBCCCEEEESSC----CHHHHHHHHHHTCCEEEESSCSS
T ss_pred CCHHHHHHHHH-HHCC-HHH-HCCCC---CCEEEECCCCCCCCEEEEEECC----CHHHHHHHHHCCCCEEEECCCCC
T ss_conf 29999999998-7699-968-26679---8636858987753889999679----99999999977999999799866
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=52.26 E-value=3 Score=19.39 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.6
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 22456543--065200012333332
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
++|.|+|- .||||.+.+|+.-|.
T Consensus 2 ~iI~i~G~~GsGKSTva~~La~~L~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0999978999999999999999969
No 117
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=51.53 E-value=4 Score=18.61 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 022456543--065200012333332102322222
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.++|+|.|- .||||.+.+|+.-|...|..+..+
T Consensus 9 G~~I~ieG~dGsGKST~~~~L~~~L~~~g~~~~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 55999989988889999999999998679966998
No 118
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=51.12 E-value=6.3 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=16.1
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 9997998999999999982762002245654
Q gi|254781102|r 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 (497)
Q Consensus 92 ~i~V~d~~~aL~~la~~~~~~~~~~vIgITG 122 (497)
..++.+...++..+.+. .+..++.-|-|
T Consensus 102 ~~~~~sl~~al~~~~~~---~~~~~i~IiGG 129 (515)
T 3nrr_A 102 CLVYEDLSTAIRDLRAN---VPHNKIFILGG 129 (515)
T ss_dssp EEEESSHHHHHHHHHHH---SCCSCEEECCC
T ss_pred CEEECCHHHHHHHHHHC---CCCCCEEEECC
T ss_conf 68989999999999841---68785899651
No 119
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=50.89 E-value=2.6 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=22.0
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCC
Q ss_conf 22456543--06520001233333210232
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~ 143 (497)
+||+|-|. .||||++.+++.-|.-....
T Consensus 6 pIIaIDGPagSGKST~ak~LA~~Lg~~~ld 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 789977898678899999999991997656
No 120
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A*
Probab=50.39 E-value=10 Score=15.95 Aligned_cols=34 Identities=26% Similarity=0.139 Sum_probs=18.7
Q ss_pred CCCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEECC
Q ss_conf 6898899803887---6768889999985988999847
Q gi|254781102|r 41 QAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSS 75 (497)
Q Consensus 41 ~~g~lFval~G~~---~dGh~fi~~A~~~GA~~~i~~~ 75 (497)
-+|-..+ +-|.. -=|..-+....++||..+++++
T Consensus 28 L~GK~al-VTGass~~GIG~aiA~~la~~Ga~Vvi~~r 64 (296)
T 3k31_A 28 MEGKKGV-IIGVANDKSLAWGIAKAVCAQGAEVALTYL 64 (296)
T ss_dssp TTTCEEE-EECCCSTTSHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEE-EECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6999899-989999864999999999986999999968
No 121
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=50.34 E-value=4.2 Score=18.52 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..+|.|+|.. ||||.+..+++-|.
T Consensus 4 ~p~~I~i~G~~GsGKTTla~~La~~~~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998999986899997999999999969
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=50.10 E-value=3.8 Score=18.79 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.2
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.+....|.|+|-. ||||.+.+|+.-|.
T Consensus 7 ~~kg~~Ivi~G~~GsGKTTiak~La~~l~ 35 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD 35 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99997699987999988999999999868
No 123
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=49.62 E-value=11 Score=15.87 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHCCCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 345521000135578602300---03786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 341 VVPGRFEFVGTNSRGGRIYVD---YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 341 ~~~gR~E~i~~~~~~~~viiD---yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+.|+|-.+|-+..... .-.+ +.++++ .+++.+++.... .|.|.| |. .+-+.+.+++|.+++|-
T Consensus 55 plp~R~~iVlsr~~~~-~~~~~~~~~~~~~---~ai~~~~~~~~~-~I~ViG--G~-------~Iy~~~l~~~dei~iT~ 120 (162)
T 1vdr_A 55 DLPGSAQIVMSRSERS-FSVDTAHRAASVE---EAVDIAASLDAE-TAYVIG--GA-------AIYALFQPHLDRMVLSR 120 (162)
T ss_dssp SCCSSSEEEECSSCCC-CCSSSCCEESSHH---HHHHHHHHTTCS-CEEEEE--CH-------HHHHHHGGGCSEEEEEE
T ss_pred CCCCCCEEEEEECCCC-CCCCCEEEEEEHH---HHHHHHHCCCCC-EEEEEC--CH-------HHHHHHHHHCCEEEEEE
T ss_conf 2568732999712121-0269769961299---999998628996-699987--78-------99999987438579999
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=48.98 E-value=3.4 Score=19.10 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.0
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 0224565430--65200012333332
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+++|.|+|.. ||||.+..|+.-|.
T Consensus 2 ~klIii~G~~GsGKTTla~~La~~l~ 27 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 95899989999898999999999809
No 125
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=48.97 E-value=11 Score=15.81 Aligned_cols=65 Identities=26% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 4334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 339 f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
++|+|+|-.+|-+.+... ..+.+.-..+++.+++.++. .+.+.|.| |. .+=+.+.+++|.+++|-
T Consensus 58 ~~pL~~r~niVltr~~~~--~~~~~~v~~s~~~al~~~~~---~~~i~IiG--G~-------~IY~~~l~~~d~l~iT~ 122 (167)
T 2w3w_A 58 VRPLPGRRNVVVSRRPDF--VAEGARVAGSLEAALAYAGS---DPAPWVIG--GA-------QIYLLALPHATRCEVTE 122 (167)
T ss_dssp GSSCTTSEEEEECSCTTC--CCTTSEEESSHHHHHHHTTT---CSSCEEEE--CH-------HHHHHHGGGCSEEEEEE
T ss_pred CCCCCCCEEEEEECCCCC--CCCCEEEECCHHHHHHHHCC---CCEEEEEC--CH-------HHHHHHHHHCCEEEEEE
T ss_conf 645899849999536420--36875995689999987104---76699982--49-------99999997689999999
No 126
>2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 4cd2_A* 1vj3_A*
Probab=48.96 E-value=6.3 Score=17.34 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC------CCCCCEEEECCCCCCCCHHHHHHHHH-HHHC
Q ss_conf 4433455210001355786023000378689999741211002------34440354026654600468999999-8619
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIA-LDLA 410 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~------~~r~i~V~G~~Gdrd~~kr~~mg~~a-~~~a 410 (497)
.++|+|+|..+|-+...... ..+..+.-.++..+++.++... ..+.|.|+| |.. ..-+.. ..++
T Consensus 68 ~~rPLp~R~niVlSr~~~~~-~~~~~~~~~s~~~al~~~~~~~~~~~~~~~~~I~IiG--G~~------IY~~~l~~~~~ 138 (206)
T 2fzi_A 68 QFRPLKGRINVVITRNESLD-LGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIG--GAQ------LYKAAMDHPKL 138 (206)
T ss_dssp GGCSCTTEEEEEECSCCSSC-CCSSCEEESSHHHHHHHHHHHSCTTSSSEEEEEEEEE--CHH------HHHHHHHCTTE
T ss_pred CCCCCCCCEEEEEECCCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC--CHH------HHHHHHCCCCC
T ss_conf 66788997489992688755-6899699678999999999866565304676499946--399------99998577010
Q ss_pred CEEEECC
Q ss_conf 8999908
Q gi|254781102|r 411 DIAIVTD 417 (497)
Q Consensus 411 d~vi~t~ 417 (497)
|.+++|.
T Consensus 139 d~i~lT~ 145 (206)
T 2fzi_A 139 DRIMATI 145 (206)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
T ss_conf 8899999
No 127
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=48.96 E-value=4.8 Score=18.13 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=26.7
Q ss_pred CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 0022456543--06520001233333210232222
Q gi|254781102|r 114 PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 114 ~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
..++|+|.|- .||||-+.+|+.-|...|..+..
T Consensus 26 ~~kfIvieG~dGsGKSTq~~~L~~~L~~~g~~~~~ 60 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHIT 60 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78989998999884999999999999966998599
No 128
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Probab=48.74 E-value=10 Score=15.90 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 340 ~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+++|+|..+|-+... ....+.++...++..++...+ ..+.+.|+| |. .+=+.+.+++|.+++|-
T Consensus 53 ~pL~~R~niVltr~~--~~~~~~~~~~~sl~~~~~~~~---~~~~i~VIG--G~-------~iY~~~l~~~d~i~iT~ 116 (162)
T 3ia4_A 53 RPLPGRLNIVLSRQT--DYQPEGVTVVATLEDAVVAAG---DVEELMIIG--GA-------TIYNQCLAAADRLYLTH 116 (162)
T ss_dssp SCCTTSCEEEECCCT--TCCCTTSEEESSHHHHHHHHT---TCSEEEECC--CH-------HHHHHHGGGCSEEEEEE
T ss_pred CCCCCCEEEEEECCC--CCCCCCEEEECCHHHHHHHHC---CCCCEEECC--HH-------HHHHHHHHHCCEEEEEE
T ss_conf 266675379994686--556598089727899999736---897179915--49-------99999997699999988
No 129
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=48.41 E-value=9.3 Score=16.26 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999999998276200224565430652000123333321023222223454433235544576
Q gi|254781102|r 98 TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 (497)
Q Consensus 98 ~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~T 163 (497)
..+.+.++...+. .+.-.-+-+-|-||--+|+..+++.+...|.....+|.+.|+.|.......|
T Consensus 89 ~~~~~~~i~~~l~-~~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vIgIPKTIDNDl~~tD~t 153 (419)
T 3hno_A 89 NRREYERLIEVFK-AHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCC 153 (419)
T ss_dssp CHHHHHHHHHHHH-HTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSC
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECC
T ss_conf 2579999999999-7099879997580789999999999997089941896124325787763327
No 130
>3ojf_A Enoyl-[acyl-carrier-protein] reductase (FABL) (Na; enoyl-ACP reductase, tetramer, rossmann fold, NAD(P) binding oxidoreductase; HET: IMJ NDP; 2.20A {Bacillus cereus} PDB: 2qio_A* 3oje_A
Probab=48.19 E-value=11 Score=15.73 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=11.0
Q ss_pred HHHHHHHHHHCCCEEEEECC
Q ss_conf 68889999985988999847
Q gi|254781102|r 56 GHLFIPQAIAQGAEAIVVSS 75 (497)
Q Consensus 56 Gh~fi~~A~~~GA~~~i~~~ 75 (497)
|..-+..-.++||..+++.+
T Consensus 21 G~aiA~~la~~Ga~V~i~~~ 40 (257)
T 3ojf_A 21 AWGIARSLHNAGAKLIFTYA 40 (257)
T ss_dssp HHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999987999999828
No 131
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=47.58 E-value=11 Score=15.67 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=31.8
Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 34552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 341 ~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
++|+|..+|-+..... -.+.+....++..+++..+.. . +.+.|+| |. .+=+.+..++|.+++|.
T Consensus 77 pl~~R~niVlsr~~~~--~~~~~~~~~sl~~al~~~~~~-~-~~i~VIG--G~-------~IY~~~l~~~d~i~lT~ 140 (190)
T 3ix9_A 77 LLPKRETLILTRNPEE--KIDGVATFHDVQSVLDWYSAQ-E-KNLYIVG--GK-------QIFQAFEPYLDEVIVTH 140 (190)
T ss_dssp CCTTCEEEEECCSCCS--CCSSSEEESSHHHHHHHHHTS-C-SCEEEEE--CH-------HHHHHHGGGCSEEEEEE
T ss_pred CCCCCEEEEEECCCCC--CCCCCEECCCHHHHHHHHHHC-C-CEEEEEC--CH-------HHHHHHHHHCCEEEEEE
T ss_conf 4489649999656433--557634027499999888625-7-4399965--68-------99999998799999999
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.30 E-value=4 Score=18.62 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=20.3
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
...++|.|+|-. ||||++..|+..|.
T Consensus 7 ~~G~iI~i~G~~GsGKTT~a~~La~~lg 34 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9981899989999988999999999969
No 133
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=46.25 E-value=4.3 Score=18.42 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=17.3
Q ss_pred EEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 4565430--652000123333321
Q gi|254781102|r 118 LAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 118 IgITGTn--GKTTt~~~l~~iL~~ 139 (497)
|+|||.| ||||....++..|..
T Consensus 3 i~i~G~~GsGKTTLlk~ia~~l~~ 26 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999999997099999999974187
No 134
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=46.22 E-value=4.8 Score=18.10 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 022456543--065200012333332102322
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
.++|+|.|- .||||.+.+++.-|+..|.++
T Consensus 4 G~~I~ieG~dGsGKtT~~~~L~~~l~~~~~~~ 35 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 73899989988859999999999984689989
No 135
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=46.21 E-value=4.9 Score=18.04 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.8
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 22456543--065200012333332
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
.+|+|+|. .||||++..|++-|.
T Consensus 7 ~iI~I~g~~GsGKstiak~LA~~Lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 5898669999986999999999959
No 136
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=45.38 E-value=12 Score=15.45 Aligned_cols=13 Identities=8% Similarity=0.314 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 97 ~llGRVid~~G~p 109 (438)
T 2dpy_A 97 ALLGRVLDGGGKP 109 (438)
T ss_dssp GGTTEEECTTCCB
T ss_pred CCCCCEECCCCCC
T ss_conf 7246788977657
No 137
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=45.13 E-value=6.4 Score=17.32 Aligned_cols=31 Identities=16% Similarity=0.429 Sum_probs=25.2
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 022456543--0652000123333321023222
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
.++|+|-|- .||||.+..|+.-|.+.|.++.
T Consensus 3 g~~I~ieG~dGsGKsT~~~~L~~~L~~~g~~~~ 35 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 618998899998899999999999997799759
No 138
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=44.15 E-value=12 Score=15.45 Aligned_cols=62 Identities=31% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 44334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.++|+|+|..+|-+.... ...+...--.+++.+++ ..+ +.|+ ||. .+=+.+.+++|.+++|.
T Consensus 53 ~~rPLp~R~niVlsr~~~--~~~~~~~v~~sl~~al~------~~~-i~Vi--GG~-------~iY~~~l~~~~~i~lT~ 114 (159)
T 1df7_A 53 KVRPLPGRRNVVLSRQAD--FMASGAEVVGSLEEALT------SPE-TWVI--GGG-------QVYALALPYATRCEVTE 114 (159)
T ss_dssp GGSSCTTSEEEEECSSTT--CCCTTSEEESSHHHHTT------SSS-EEEC--CCH-------HHHHHHGGGCSEEEEEE
T ss_pred CCCCCCCCEEEEEECCCC--CCCCCCEECCCHHHHHC------CCC-EEEE--CHH-------HHHHHHHHHCCEEEEEE
T ss_conf 763699965999716644--36788673069988513------675-8996--448-------99999987689999999
No 139
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=43.94 E-value=4.4 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++||.|.| ||||+..++.-+++
T Consensus 33 ~Gei~~liG~nGaGKSTLl~~i~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999839999999974988
No 140
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3fs6_A* 1mvs_A* ...
Probab=43.61 E-value=13 Score=15.28 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEC----CCCCHHHHHHHHHHHHHC---CCCCCCEEEECCCCCCCCHHHHHHHHHHH--H
Q ss_conf 43345521000135578602300----037868999974121100---23444035402665460046899999986--1
Q gi|254781102|r 339 LHVVPGRFEFVGTNSRGGRIYVD----YAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD--L 409 (497)
Q Consensus 339 f~~~~gR~E~i~~~~~~~~viiD----yahNP~s~~~aL~~l~~~---~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~--~ 409 (497)
.+|+|+|..+|-+... ..-.+ +.++ +..+++.+... ...+.+.|+| |.+ +=+.+-+ +
T Consensus 64 ~rpLp~R~niVlSr~~--~~~~~~~~~v~~s---~~~~~~~~~~~~~~~~~~~ifIIG--G~~-------IY~~~l~~~~ 129 (186)
T 1kmv_A 64 NRPLKGRINLVLSREL--KEPPQGAHFLSRS---LDDALKLTEQPELANKVDMVWIVG--GSS-------VYKEAMNHPG 129 (186)
T ss_dssp GCSCTTSEEEEECSSC--SSCCTTCSEEESS---HHHHHHHHTSTTTTTTEEEEEECC--CHH-------HHHHHHTSCS
T ss_pred CCCCCCCEEEEEECCC--CCCCCCCEEECCC---HHHHHHHHHHHHHCCCCCEEEEEC--CHH-------HHHHHHHCCC
T ss_conf 7626996699983254--4456876686188---999999865476506776699975--099-------9999973755
Q ss_pred CCEEEECC
Q ss_conf 98999908
Q gi|254781102|r 410 ADIAIVTD 417 (497)
Q Consensus 410 ad~vi~t~ 417 (497)
+|.+++|-
T Consensus 130 ~d~i~lT~ 137 (186)
T 1kmv_A 130 HLKLFVTR 137 (186)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEE
T ss_conf 44799999
No 141
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=43.09 E-value=5.7 Score=17.64 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 2456543--06520001233333210232222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
+|.|.|- .||||.+.+|+.-|+..|.++..
T Consensus 2 ~I~ieG~~GsGKsT~~~~L~~~L~~~g~~v~~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89998899898999999999999877994899
No 142
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A*
Probab=43.08 E-value=12 Score=15.43 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 3345521000135578602300--03786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 340 HVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 340 ~~~~gR~E~i~~~~~~~~viiD--yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+|+|+|..+|-+...... ..+ +.++++ .+++.+.+....+ +.|.| |. .+-+.+..++|.+++|.
T Consensus 52 ~pL~~R~niVls~~~~~~-~~~~~~~~s~~---~~~~~~~~~~~~~-i~IiG--G~-------~IY~~~l~~~d~i~lT~ 117 (162)
T 3dfr_A 52 RPLPERTNVVLTHQEDYQ-AQGAVVVHDVA---AVFAYAKQHLDQE-LVIAG--GA-------QIFTAFKDDVDTLLVTR 117 (162)
T ss_dssp SSCTTSEEEEECSCTTCC-CTTSEEESSHH---HHHHHHHHCCSSC-EEECC--CH-------HHHHHTGGGCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCCC-CCCEEEECCHH---HHHHHHHHCCCCC-EEEEC--HH-------HHHHHHHHHCCEEEEEE
T ss_conf 677997189984775423-48869938999---9998765236665-89968--79-------99999886579999987
No 143
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=42.92 E-value=6 Score=17.48 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.6
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 2456543--06520001233333210232222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
+|+|.|- .||||...+|..-|...|+++..
T Consensus 2 ~I~ieG~dGsGKST~~~~L~e~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89998998789999999999999877997899
No 144
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=42.02 E-value=5.5 Score=17.75 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=15.9
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHH
Q ss_conf 6200224565430--6520001233
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQ 134 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~ 134 (497)
-++..++||.|.| ||||...++.
T Consensus 43 i~~Gei~~iiG~nGaGKSTL~~~i~ 67 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8899799999999999999999985
No 145
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=41.94 E-value=5.9 Score=17.55 Aligned_cols=28 Identities=21% Similarity=0.549 Sum_probs=22.7
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCC
Q ss_conf 022456543--0652000123333321023
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~ 142 (497)
.++|+|.|. .||||.+.+|+.-|...+.
T Consensus 24 ~k~I~IeG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 998999899888599999999999734898
No 146
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=41.90 E-value=14 Score=15.11 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHCCCEEEEECC
Q ss_conf 768889999985988999847
Q gi|254781102|r 55 DGHLFIPQAIAQGAEAIVVSS 75 (497)
Q Consensus 55 dGh~fi~~A~~~GA~~~i~~~ 75 (497)
=|..-+....++||..+++++
T Consensus 20 IG~aiA~~la~~G~~V~i~~r 40 (275)
T 2pd4_A 20 IAYGIAQSCFNQGATLAFTYL 40 (275)
T ss_dssp HHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999987999999968
No 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=41.69 E-value=3.4 Score=19.05 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 24565430--6520001233333210
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
+|+|.|.- ||||.+.+|+.-|...
T Consensus 22 ~I~IeG~~GsGKST~~~~L~~~l~~~ 47 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKYKNDI 47 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99988999876899999999865896
No 148
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=41.50 E-value=3.4 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.1
Q ss_pred EEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 5430652000123333321023222223
Q gi|254781102|r 121 TGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 121 TGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.|=.||||++.-++..|...|+++..+-
T Consensus 8 KGGvGKTt~a~~lA~~la~~g~~VlliD 35 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8822799999999999996899689997
No 149
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=41.28 E-value=6.7 Score=17.17 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCEEEEEEE--ECCCEEHHHHHHHHHHCCC
Q ss_conf 0022456543--0652000123333321023
Q gi|254781102|r 114 PENILAVTGT--SGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 114 ~~~vIgITGT--nGKTTt~~~l~~iL~~~g~ 142 (497)
..++|+|.|- .||||.+.+|+.-|+..+.
T Consensus 4 kG~fIviEGidGsGKST~~~~L~~~L~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 8728999899888499999999999971988
No 150
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Probab=40.09 E-value=5.6 Score=17.67 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=18.5
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++|+.|-| ||||+-.++.-++.
T Consensus 40 ~Gei~gllGpNGaGKSTLlk~i~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 996999989999889999999966878
No 151
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=39.89 E-value=15 Score=14.91 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=4.4
Q ss_pred CCCCCEEECCCC
Q ss_conf 222100101223
Q gi|254781102|r 294 SVEGKDFDFLFP 305 (497)
Q Consensus 294 ~~~~~~~~~~l~ 305 (497)
.+++-.++|=.|
T Consensus 93 ~aDg~~iDFMaP 104 (207)
T 2hly_A 93 EADGWAIDFMAP 104 (207)
T ss_dssp EETTEEEETTGG
T ss_pred EECCEEEEECCH
T ss_conf 978887661153
No 152
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=39.69 E-value=15 Score=14.89 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.0
Q ss_pred HHHCCCCHHHHHHHH
Q ss_conf 752026767631112
Q gi|254781102|r 322 CIAIGIDSALVLEHL 336 (497)
Q Consensus 322 a~~lGi~~~~i~~~L 336 (497)
+...|++.+++.+.+
T Consensus 454 ~~~~g~~~~~~~~el 468 (511)
T 2oap_1 454 ADFLGVSVQEVYDEM 468 (511)
T ss_dssp HHHHTSCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHH
T ss_conf 987599999999999
No 153
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=39.21 E-value=15 Score=14.91 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=28.8
Q ss_pred EECCHHHHHHHHHHHHHCCC---CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 97998999999999982762---00224565430--65200012333332
Q gi|254781102|r 94 VVDNTRKFLSLFASRLYGKH---PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 94 ~V~d~~~aL~~la~~~~~~~---~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+-.|..+...+++...+... ...+|+|+|.. ||||.-..|..-+.
T Consensus 14 ~~~~il~~~~~~~~~~r~~~~~~~~~~V~ivG~pnaGKSTLln~L~~~~~ 63 (226)
T 2hf9_A 14 IAKDILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999998699999999988874984999988999989999999999840
No 154
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, structural genomics, PSI; 2.00A {Aquifex aeolicus VF5}
Probab=39.05 E-value=15 Score=14.83 Aligned_cols=19 Identities=11% Similarity=-0.047 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCEEEEEC
Q ss_conf 6888999998598899984
Q gi|254781102|r 56 GHLFIPQAIAQGAEAIVVS 74 (497)
Q Consensus 56 Gh~fi~~A~~~GA~~~i~~ 74 (497)
|..-+..-.+.||..+++.
T Consensus 36 G~aiA~~la~~Ga~V~i~~ 54 (285)
T 2p91_A 36 AYGIAKSFHREGAQLAFTY 54 (285)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999998699999985
No 155
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=38.59 E-value=16 Score=14.78 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=18.4
Q ss_pred HHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHC
Q ss_conf 999986198999908879898989999999834
Q gi|254781102|r 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 (497)
Q Consensus 403 g~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g 435 (497)
..+....+|.+|+-----+++||.+-+.++.+.
T Consensus 201 ~~ai~~Gad~iIVGR~I~~a~dP~~aa~~i~~~ 233 (239)
T 1dbt_A 201 AIAREKGSSAIVVGRSITKAEDPVKAYKAVRLE 233 (239)
T ss_dssp HHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 999987999999898566899999999999999
No 156
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=38.38 E-value=5.8 Score=17.56 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=18.9
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..+|||.|.+ ||||...++.-++.
T Consensus 33 ~~Ge~iaIvG~sGsGKSTLl~ll~gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6999999999999829999999977774
No 157
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.65 E-value=7.1 Score=17.01 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHH
Q ss_conf 2456543--0652000123333321
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQR 139 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~ 139 (497)
+|+|.|. .||||.+.+|+.-|..
T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999888987899999999998499
No 158
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=37.42 E-value=6.9 Score=17.07 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=18.5
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++||.|-| ||||.-.+|.-+++
T Consensus 63 ~Ge~vaivG~sGsGKSTLl~li~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999999759999999967874
No 159
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=37.18 E-value=16 Score=14.64 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 5786023000378689999741211002344403540266546004689999998619899990887
Q gi|254781102|r 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 (497)
Q Consensus 353 ~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~ 419 (497)
.++..|++.+.-+...+..+++.+++. +-++|+|- +.++. | ++++||+++.+...
T Consensus 89 ~~DvvI~iS~sG~t~~~~~~~~~ak~~-g~~vI~IT---~~~~s---~-----L~~~ad~~l~~~~~ 143 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVNISKKAKDI-GSKLVAVT---GKRDS---S-----LAKMADVVMVVKGK 143 (200)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHH-TCEEEEEE---SCTTS---H-----HHHHCSEEEECCSS
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEEEE---CCCCC---H-----HHHHCCEEEEECCC
T ss_conf 999899857997742169999999987-99699997---99999---7-----89959999993898
No 160
>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=36.77 E-value=17 Score=14.60 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 89899999999965898
Q gi|254781102|r 443 GNRIEAIRTAIEMLNKQ 459 (497)
Q Consensus 443 ~dr~eAi~~A~~~a~~g 459 (497)
..-+|+++.+-++.++.
T Consensus 465 g~iee~~~k~~kl~ke~ 481 (482)
T 2ck3_D 465 GPIEEAVAKADKLAEEH 481 (482)
T ss_dssp SSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 88999999999888640
No 161
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=36.44 E-value=6.7 Score=17.18 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=18.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||.|-| ||||.-.++.-++.
T Consensus 31 ~~Ge~~~iiG~nGaGKSTLlk~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6998999989999999999999965888
No 162
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=36.41 E-value=6.8 Score=17.13 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=18.4
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.+..++||.|.| ||||.-.++.-++.
T Consensus 45 ~~Ge~~~liGpNGaGKSTLl~~i~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999999649999999965988
No 163
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=36.25 E-value=6.9 Score=17.11 Aligned_cols=26 Identities=38% Similarity=0.719 Sum_probs=18.6
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||+|.+ ||||...++.-++.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5999999999998739999999967876
No 164
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=36.13 E-value=6.6 Score=17.21 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=17.6
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 0224565430--65200012333332
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
..+++|.|.| ||||.-.++.-++.
T Consensus 30 Ge~v~liGpNGaGKSTLlk~i~Gl~p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999998999849999999965988
No 165
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=36.12 E-value=6.7 Score=17.17 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=17.6
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 200224565430--6520001233333
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
++...+||+|.| ||||...++.-++
T Consensus 44 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 599899999999987999999994788
No 166
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A*
Probab=35.79 E-value=17 Score=14.50 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=45.0
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 78602300037868999974121100234440354026654600468999999861989999088798989899999998
Q gi|254781102|r 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 354 ~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
.+..+++|..-++..+..+++.++ +.|+ ++++|..++...- + +.....+.. -+..+-.. .++.+...+.+.
T Consensus 241 ~~~d~vid~~g~~~~~~~~~~~l~--~~G~-iv~~G~~~~~~~~--~-~~~~~~~~~--~i~g~~~~-~~~~~~~~~l~~ 311 (356)
T 1pl8_A 241 CKPEVTIECTGAEASIQAGIYATR--SGGT-LVLVGLGSEMTTV--P-LLHAAIREV--DIKGVFRY-CNTWPVAISMLA 311 (356)
T ss_dssp SCCSEEEECSCCHHHHHHHHHHSC--TTCE-EEECSCCCSCCCC--C-HHHHHHTTC--EEEECCSC-SSCHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHH--CCCE-EEEEECCCCCCCC--C-HHHHHHCCE--EEEEEECC-HHHHHHHHHHHH
T ss_conf 621189990687178999999832--7988-9998237876665--7-789875556--99999553-678999999998
Q ss_pred HCCC---CE----EEECCHHHHHHHHHHHCCCCCEEE
Q ss_conf 3479---80----997898999999999658988999
Q gi|254781102|r 434 HGIP---GF----IEKGNRIEAIRTAIEMLNKQDVLV 463 (497)
Q Consensus 434 ~g~~---~~----~~~~dr~eAi~~A~~~a~~gDvil 463 (497)
+|-- .. ....+-.+|++.. +.-+.+-+|+
T Consensus 312 ~g~l~~~~~i~~~~~l~~~~~A~~~l-~~g~~~KvVi 347 (356)
T 1pl8_A 312 SKSVNVKPLVTHRFPLEKALEAFETF-KKGLGLKIML 347 (356)
T ss_dssp TTSCCCGGGEEEEEEGGGHHHHHHHH-HTTCCSEEEE
T ss_pred CCCCCCCCEEEEEEEHHHHHHHHHHH-HCCCCEEEEE
T ss_conf 39999875187998699999999999-6799618999
No 167
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=35.77 E-value=7.1 Score=17.03 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=18.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||.|.| ||||.-.++.-++.
T Consensus 32 ~~Ge~vaivG~sGsGKSTLl~ll~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6998999999998839999999957877
No 168
>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A*
Probab=35.56 E-value=17 Score=14.48 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHCCCEEEEECCC
Q ss_conf 7688899999859889998473
Q gi|254781102|r 55 DGHLFIPQAIAQGAEAIVVSSA 76 (497)
Q Consensus 55 dGh~fi~~A~~~GA~~~i~~~~ 76 (497)
=|..-+.+..++||..+++.+.
T Consensus 22 IG~aia~~la~~Ga~V~i~~~~ 43 (261)
T 1ulu_A 22 LGFAIAAKLKEAGAEVALSYQA 43 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999879999998174
No 169
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=35.20 E-value=15 Score=14.86 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=10.6
Q ss_pred EEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 02300-03786899997412110
Q gi|254781102|r 357 RIYVD-YAHTSNSLEMILKNIRT 378 (497)
Q Consensus 357 ~viiD-yahNP~s~~~aL~~l~~ 378 (497)
..+.| ...+++.+.+.+..+..
T Consensus 285 l~i~d~~~~t~~~i~~~~~~~~~ 307 (444)
T 2q6t_A 285 IYIDDTPDLTLMEVRARARRLVS 307 (444)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 79968999999999999998665
No 170
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=35.18 E-value=11 Score=15.84 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCCCCEEEEEE----EECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 62002245654----3065200012333332102322222
Q gi|254781102|r 112 KHPENILAVTG----TSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 112 ~~~~~vIgITG----TnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
....|.|-||| +-||..++.=++.+|+..|+++..+
T Consensus 20 ~~~~KyIfVtGGV~SglGKGi~aaSig~lLk~~g~~V~~~ 59 (294)
T 2c5m_A 20 FQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI 59 (294)
T ss_dssp -CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECC
T ss_pred CCCEEEEEEECCEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4530599991883036640799999999999779714676
No 171
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=35.09 E-value=18 Score=14.43 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 340 ~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+++|+|..+|-+...... ...+..-.+...++...+ ...+.+.|+| |. .+=+.+..++|.+++|-
T Consensus 52 ~pL~~R~niVls~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~i~IiG--G~-------~iY~~~l~~~~~i~lT~ 116 (164)
T 1zdr_A 52 RPLPGRDNVVVTGNRSFR--PEGCLVLHSLEEVKQWIA--SRADEVFIIG--GA-------ELFRATMPIVDRLYVTK 116 (164)
T ss_dssp SCCTTSEEEEECSCTTCC--CTTCEEECSHHHHHHHHH--TCCSCEEEEE--CH-------HHHHHHGGGCCEEEEEE
T ss_pred HCCCCCCEEEEECCCCCC--CCCCEEECCHHHHHHHHH--CCCCCEEEEC--CH-------HHHHHHHHHCCEEEEEE
T ss_conf 417788359986032223--565301136899999974--3787389945--48-------99999987526999999
No 172
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=34.98 E-value=7.1 Score=17.00 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=18.3
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||.|-| ||||...++.-++.
T Consensus 31 ~~Gei~gliGpnGaGKSTL~~~i~G~~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8997999999999869999999978977
No 173
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=34.61 E-value=7.4 Score=16.88 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.9
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHH
Q ss_conf 00224565430--652000123333
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQI 136 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~i 136 (497)
+..++||-|.| ||||.-.++.-+
T Consensus 25 ~Gei~~iiGpNGaGKSTLl~~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8989999989998199999999478
No 174
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=34.34 E-value=9.9 Score=16.07 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=26.9
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 22456543--0652000123333321023222223454
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPTS 151 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~~ 151 (497)
+++.|||- .||||+...+...++..|..+..+..+|
T Consensus 205 ~~~~i~G~aGTGKTt~l~~i~~~~~~~~~~v~~~ApTg 242 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG 242 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 88999899860099999999999986798499878729
No 175
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.18 E-value=18 Score=14.33 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCE
Q ss_conf 02676763111234433455210001355786023000378689999741211002-344403
Q gi|254781102|r 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386 (497)
Q Consensus 325 lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~ 386 (497)
..++.+++.+-++.|-.+. ++..+....+....++.|. +++....|++.++... .|+.+-
T Consensus 25 ~~~~~~~l~~lf~~~G~i~-~~~~~~~~~~~~~afV~f~-~~~~A~~Ai~~lng~~i~g~~l~ 85 (96)
T 2e44_A 25 PHLQWEVLDSLLVQYGVVE-SCEQVNTDSETAVVNVTYS-SKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp SSSCHHHHHHHHHHHSCEE-EEEEECCSSSSEEEEEEES-SHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCHHHHHHHHHHCCCEE-EEEEEECCCCCCEEEEEEC-CHHHHHHHHHHHCCCEECCEEEE
T ss_conf 9899999999997559679-9998531454646899977-68999999998689898999999
No 176
>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A*
Probab=33.77 E-value=10 Score=15.91 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=9.9
Q ss_pred HHHHHH-HHHCCCEEEEECC
Q ss_conf 888999-9985988999847
Q gi|254781102|r 57 HLFIPQ-AIAQGAEAIVVSS 75 (497)
Q Consensus 57 h~fi~~-A~~~GA~~~i~~~ 75 (497)
+.|+.. -+++|-..+|+++
T Consensus 86 ~~yl~klLv~~G~kVai~eQ 105 (934)
T 2o8b_A 86 ESFVKDLLLVRQYRVEVYKN 105 (934)
T ss_dssp HHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999987998999986
No 177
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=33.68 E-value=7.9 Score=16.72 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=18.5
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||.|-+ ||||...++.-++.
T Consensus 43 ~~Ge~iaIvG~sGsGKSTLl~ll~gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5999999999999869999999976775
No 178
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=33.34 E-value=11 Score=15.65 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 89999999996589889999446886
Q gi|254781102|r 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 445 r~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
.+||+-+|+-.-.-|=.=+|.|+-|-
T Consensus 500 PREA~lhAiirkN~GcThfiVGRDHA 525 (630)
T 1x6v_B 500 PTEVQWHCRARMVAGANFYIVGRDPA 525 (630)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 08999999999977998364688878
No 179
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=33.34 E-value=8.4 Score=16.53 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=36.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCEEEECCCCC-CCCCHHHH---HH---HHHH--CCCCEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 2665460046899999986198999908879-89898999---99---9983--47980997898999999999658988
Q gi|254781102|r 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKI---RA---EIIH--GIPGFIEKGNRIEAIRTAIEMLNKQD 460 (497)
Q Consensus 390 ~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~-r~e~~~~I---~~---~i~~--g~~~~~~~~dr~eAi~~A~~~a~~gD 460 (497)
+||+| .|-.+++.....++.+++ |.| .+-|+... .+ ++.+ |..-+.+--|+.++...| +-
T Consensus 473 SGGe~---qRv~lA~aL~~~p~lLlL--DEPT~gLD~~~r~~l~~~i~~l~~~~g~tvi~vsHD~~~~~~~a------Dr 541 (607)
T 3bk7_A 473 SGGEL---QRVAIAATLLRDADIYLL--DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS------DR 541 (607)
T ss_dssp CHHHH---HHHHHHHHHTSCCSEEEE--ECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC------SE
T ss_pred CHHHH---HHHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHC------CE
T ss_conf 99999---999999999619999999--79986779999999999999999858989999948899999869------99
Q ss_pred EEEEECC
Q ss_conf 9999446
Q gi|254781102|r 461 VLVVAGK 467 (497)
Q Consensus 461 vili~Gk 467 (497)
++++-|+
T Consensus 542 viv~~G~ 548 (607)
T 3bk7_A 542 LIVFEGE 548 (607)
T ss_dssp EEEEEEE
T ss_pred EEEECCC
T ss_conf 9999484
No 180
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=33.29 E-value=8.5 Score=16.49 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=17.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++||.|-| ||||.-.++.-++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLlk~i~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 998999988999969999999956889
No 181
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=32.93 E-value=19 Score=14.21 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=6.1
Q ss_pred EEEECCHHHHHHHHH
Q ss_conf 999799899999999
Q gi|254781102|r 92 ILVVDNTRKFLSLFA 106 (497)
Q Consensus 92 ~i~V~d~~~aL~~la 106 (497)
+|.+.||...+....
T Consensus 148 lln~TNP~~i~t~a~ 162 (450)
T 1s6y_A 148 LINFTNPAGMVTEAV 162 (450)
T ss_dssp EEECSSSHHHHHHHH
T ss_pred EEEECCHHHHHHHHH
T ss_conf 999788689999999
No 182
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=32.84 E-value=7.9 Score=16.69 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=18.2
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++...+||+|.+ ||||...++.-++.
T Consensus 29 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5998999999999989999999965677
No 183
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=32.26 E-value=20 Score=14.14 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=9.6
Q ss_pred CEEEEEEEECCCEEHHHHHHHHHHCC
Q ss_conf 22456543065200012333332102
Q gi|254781102|r 116 NILAVTGTSGKSSVASFVQQICQRSG 141 (497)
Q Consensus 116 ~vIgITGTnGKTTt~~~l~~iL~~~g 141 (497)
+-|.|-|+ |+.. .+++..|...|
T Consensus 22 kkilvIGa-G~~~--~~~a~~L~~~~ 44 (144)
T 3oj0_A 22 NKILLVGN-GMLA--SEIAPYFSYPQ 44 (144)
T ss_dssp CEEEEECC-SHHH--HHHGGGCCTTT
T ss_pred CEEEEECC-HHHH--HHHHHHHHHCC
T ss_conf 99999997-8999--99999998569
No 184
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=32.23 E-value=12 Score=15.46 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCEEEEECCC
Q ss_conf 688899999859889998473
Q gi|254781102|r 56 GHLFIPQAIAQGAEAIVVSSA 76 (497)
Q Consensus 56 Gh~fi~~A~~~GA~~~i~~~~ 76 (497)
-+.|+..-+++|=+++|+++.
T Consensus 78 ~~~y~~~Lv~~G~kV~i~eQ~ 98 (765)
T 1ewq_A 78 FEAYAERLLKMGFRLAVADQV 98 (765)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999879989999726
No 185
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9
Probab=31.97 E-value=20 Score=14.10 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=10.8
Q ss_pred CCEEEEECCCC-CCH-----HHHHHHHHHC
Q ss_conf 98899803887-676-----8889999985
Q gi|254781102|r 43 GWIFVAIVGNK-EDG-----HLFIPQAIAQ 66 (497)
Q Consensus 43 g~lFval~G~~-~dG-----h~fi~~A~~~ 66 (497)
.-.||+--|.- -|| -+-|++|+++
T Consensus 15 ~v~YVs~~Gsd~n~Gs~~~p~~tIq~Ai~~ 44 (400)
T 1ru4_A 15 RIYYVAPNGNSSNNGSSFNAPMSFSAAMAA 44 (400)
T ss_dssp CEEEECTTCCTTCCSSSTTSCBCHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 879996997579998754777889999984
No 186
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=31.56 E-value=7.1 Score=16.99 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.1
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCC
Q ss_conf 2456543--065200012333332102
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSG 141 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g 141 (497)
+|+|-|. .||||++.+|+.-|.-..
T Consensus 5 ~IaIDGpagSGKsT~ak~LA~~l~~~~ 31 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 999778986788999999999929927
No 187
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=31.50 E-value=11 Score=15.83 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCCCC-EEEEEEE--ECCCEEHHHHHHHHHHCC
Q ss_conf 62002-2456543--065200012333332102
Q gi|254781102|r 112 KHPEN-ILAVTGT--SGKSSVASFVQQICQRSG 141 (497)
Q Consensus 112 ~~~~~-vIgITGT--nGKTTt~~~l~~iL~~~g 141 (497)
+.+.- .|+|.|. .||||.+.+|+.-|++.+
T Consensus 17 ~~~~gmfIviEG~dGsGKTT~~~~L~e~L~~~~ 49 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY 49 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999864999889978869999999999999717
No 188
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=31.19 E-value=20 Score=14.02 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=48.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEE-----ECC-HHHHHHHHHHHC
Q ss_conf 44035402665460046899999986198999908879898989999999834798099-----789-899999999965
Q gi|254781102|r 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-----KGN-RIEAIRTAIEML 456 (497)
Q Consensus 383 r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~-----~~d-r~eAi~~A~~~a 456 (497)
.+++|+| ++..+-+..+.+++.+.+...++.. .++.|-.+.+.+...+-. .|| .-+.|-..++..
T Consensus 225 D~miVVG---g~nSSNT~~L~eia~~~~~~t~~Ie------~~~el~~~~l~~~~~VGITAGASTP~~lI~eVi~~l~~~ 295 (326)
T 3ke8_A 225 EVVLVVG---SKNSSNSNRLAELAQRMGKRAFLID------DAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQL 295 (326)
T ss_dssp SEEEEEC---CTTCHHHHHHHHHHHHTTCEEEEES------SGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHCCCEEEEC------CHHHCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 7999988---8899648899999997699789948------716599989679898999731268199999999999853
Q ss_pred CCCCEEEEECCCCCCCEEECCCEECCCCHHHHHH
Q ss_conf 8988999944688663584497886799899999
Q gi|254781102|r 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 (497)
Q Consensus 457 ~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~ 490 (497)
.++++..+ .+.|.... .+.|..=|..++
T Consensus 296 ~~~~~~~~--~~~~E~v~----F~lP~~lr~~~~ 323 (326)
T 3ke8_A 296 GGGEAIPL--EGREENIV----FEVPKELRVDIR 323 (326)
T ss_dssp TCCSEEEC--CCCCCCEE----ECCCGGGC----
T ss_pred CCCCEEEE--CCEEEEEE----ECCCHHHHHHHH
T ss_conf 89825980--57066667----489989987575
No 189
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=30.94 E-value=14 Score=15.18 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9998619899990887989898999999983479
Q gi|254781102|r 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 (497)
Q Consensus 404 ~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~ 437 (497)
++....+|++|+-----+++||.+-++++.+.+.
T Consensus 203 ~Ai~~GaD~iIVGR~I~~a~dP~~aa~~i~~e~~ 236 (246)
T 2yyu_A 203 KARALGSDYIVIGRSLTRAADPLRTYARLQHEWN 236 (246)
T ss_dssp HHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHCC
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9998499999989523689999999999999983
No 190
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=30.87 E-value=9.5 Score=16.19 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=17.2
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+...++|.|.+ ||||.-.+|.-++.
T Consensus 46 ~Ge~vaivG~sGsGKSTLl~li~Gl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999829999999857888
No 191
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=30.81 E-value=9.1 Score=16.30 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=18.5
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 224565430--652000123333321
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-+++|.|.| ||||+-.++.-+++.
T Consensus 25 e~~~iiGpsGsGKSTllr~i~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79999979998199999999729999
No 192
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=30.78 E-value=9.8 Score=16.10 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=16.3
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++||.|-| ||||...|+.-++.
T Consensus 49 ~Gei~~iiG~sGsGKSTLl~~i~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 997999988999989999778718967
No 193
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=30.66 E-value=21 Score=13.96 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 89980388767688899999859889998
Q gi|254781102|r 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 (497)
Q Consensus 45 lFval~G~~~dGh~fi~~A~~~GA~~~i~ 73 (497)
-||+--|.=++||.-+-++.++-+..+|+
T Consensus 25 g~VPTMGaLH~GHlsLI~~A~~~~d~vvV 53 (280)
T 2ejc_A 25 GFVPTMGYLHEGHLSLVRRARAENDVVVV 53 (280)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHSSEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99838730659999999999863893899
No 194
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=30.23 E-value=21 Score=13.92 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 5778887752026767631112344
Q gi|254781102|r 315 ALVAAGLCIAIGIDSALVLEHLEKL 339 (497)
Q Consensus 315 alaAia~a~~lGi~~~~i~~~L~~f 339 (497)
..++++..+..|.++++..+.-..|
T Consensus 217 ~saaiaa~La~G~~l~~Av~~A~~~ 241 (282)
T 3h74_A 217 LAAVIAGLLGRGYPLAPTLARANQW 241 (282)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999998699999999999999
No 195
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=30.19 E-value=8.1 Score=16.65 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCC
Q ss_conf 2456543--06520001233333210232
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~ 143 (497)
+|+|-|. .||||++..|+.-|.-....
T Consensus 18 ~IaIDGPagsGKsT~Ak~LAk~lg~~~ld 46 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 89988999778899999999993995888
No 196
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida F1}
Probab=30.05 E-value=21 Score=13.90 Aligned_cols=26 Identities=8% Similarity=-0.142 Sum_probs=12.3
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 04321-211123215455432110112
Q gi|254781102|r 200 DGIKL-IAGSFTNLGRDHIDYHQTQQA 225 (497)
Q Consensus 200 ~~i~~-diaviTNI~~dHLd~~gs~e~ 225 (497)
+.+.| ++-|+-+-+..+--.+|.+-.
T Consensus 79 ~~~~pGdVlVid~~g~~~~a~~Gel~a 105 (238)
T 3noj_A 79 EQCRPGDVLVVSPSSPCTDGYFGDLLA 105 (238)
T ss_dssp TTCCTTEEEEEEESSCCCSBCCCHHHH
T ss_pred HCCCCCEEEEEECCCCCCCEEEHHHHH
T ss_conf 615988499997788876321189999
No 197
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=30.02 E-value=21 Score=13.89 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 3786899997412110023
Q gi|254781102|r 363 AHTSNSLEMILKNIRTITS 381 (497)
Q Consensus 363 ahNP~s~~~aL~~l~~~~~ 381 (497)
|-+..|++|..++|..+..
T Consensus 308 ADt~GSlEAI~~~L~kl~~ 326 (501)
T 1zo1_I 308 ADVQGSVEAISDSLLKLST 326 (501)
T ss_dssp CSCHHHHHHHHHHHTTTTC
T ss_pred ECCCCHHHHHHHHHHHCCC
T ss_conf 5675709999998985787
No 198
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=29.94 E-value=12 Score=15.49 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.4
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCC
Q ss_conf 22456543--0652000123333321023
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~ 142 (497)
+.|.|-|- .||||...+|+.-|...+.
T Consensus 3 kfI~iEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 08999899988499999999999831598
No 199
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=29.92 E-value=21 Score=13.88 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECC-CCCCCC
Q ss_conf 999974121100234440354026-654600
Q gi|254781102|r 368 SLEMILKNIRTITSGRIIVVFGCG-GDRDQG 397 (497)
Q Consensus 368 s~~~aL~~l~~~~~~r~i~V~G~~-Gdrd~~ 397 (497)
++..+++..+++.+++.|+++=|| |+||..
T Consensus 349 Ala~a~~la~~l~~~~~VVv~lsG~G~kD~~ 379 (388)
T 1v8z_A 349 AVAYAMKLAKEMSRDEIIIVNLSGRGDKDLD 379 (388)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECBBSGGGHH
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 9999999867709879799996888550199
No 200
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=29.56 E-value=13 Score=15.28 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCC
Q ss_conf 022456543--065200012333332102
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSG 141 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g 141 (497)
.++|+|.|- .||||.+.+|+.-|+..+
T Consensus 4 g~~I~ieG~dGsGKsT~~~~L~~~l~~~~ 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 71899989988729999999999997189
No 201
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=28.81 E-value=22 Score=13.76 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 86899997412110023444035402
Q gi|254781102|r 365 TSNSLEMILKNIRTITSGRIIVVFGC 390 (497)
Q Consensus 365 NP~s~~~aL~~l~~~~~~r~i~V~G~ 390 (497)
++..+..+++.++ +.|+ ++++|.
T Consensus 279 ~~~~~~~~~~~~~--~~G~-i~~~G~ 301 (398)
T 1kol_A 279 PATVLNSLMQVTR--VAGK-IGIPGL 301 (398)
T ss_dssp TTHHHHHHHHHEE--EEEE-EEECSC
T ss_pred CHHHHHHHHHHHC--CCCE-EEEEEE
T ss_conf 0577999998721--6978-999820
No 202
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=28.69 E-value=23 Score=13.75 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 976787866789887320335565557430024530231468988998038876768889999985988999847322
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~ 78 (497)
||+.+|... +....+.... .|-.=+|+..++++ .-..+++|+.-. .+=+++|+++||-.+|+-.+.-
T Consensus 1 m~~~el~~~-----l~~~~~~~~~-~d~d~~GL~v~~~~-~V~kI~~alD~t----~~vi~~Ai~~g~dlIItHHP~~ 67 (247)
T 1nmo_A 1 MKNTELEQL-----INEKLNSAAI-SDYAPNGLQVEGKE-TVQKIVTGVTAS----QALLDEAVRLGADAVIVHHGYF 67 (247)
T ss_dssp CBHHHHHHH-----HHHHTTCTTS-CCSSCCEEEECCCS-BCCEEEEEEECC----HHHHHHHHHTTCSEEEEEECSC
T ss_pred CCHHHHHHH-----HHHHCCHHHC-CCCCCCEEEECCCC-CCCEEEEEECCC----HHHHHHHHHCCCCEEEECCCHH
T ss_conf 958999999-----9855698550-68898723867841-069899997699----9999999977999999898221
No 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=28.05 E-value=22 Score=13.78 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=4.3
Q ss_pred CCCCCEEEEE
Q ss_conf 5898899994
Q gi|254781102|r 456 LNKQDVLVVA 465 (497)
Q Consensus 456 a~~gDvili~ 465 (497)
++.=|+|+-.
T Consensus 307 ~~~iD~vV~i 316 (330)
T 2pt7_A 307 KDLIDMIVHI 316 (330)
T ss_dssp HTTCCEEEEE
T ss_pred HHHCCEEEEE
T ss_conf 8634589998
No 204
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=28.02 E-value=12 Score=15.57 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.7
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..+++|.|-| ||||+-.||+-+++.
T Consensus 36 ~Ge~~~llGpsGsGKSTll~~iaGl~~p 63 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999998599999999749998
No 205
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=27.79 E-value=23 Score=13.65 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHCCCCCCCEE
Q ss_conf 899997412110023444035
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVV 387 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V 387 (497)
+=+..+++.|++-+..|.+++
T Consensus 367 DQl~~vi~~Lk~~p~sRr~i~ 387 (521)
T 3irm_A 367 DQIKAIVETLKTNPDDRRMLF 387 (521)
T ss_dssp CHHHHHHHHHHHCTTCSCCEE
T ss_pred HHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999998751997411898
No 206
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=27.39 E-value=24 Score=13.60 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=49.6
Q ss_pred EEECC--CCCHHHHHHHHHHHHHCCCCCCC--EEEECCC-CC-CCCHHHHHHHHHHHH-CC-EEEECCCCCCCCCHHHHH
Q ss_conf 23000--37868999974121100234440--3540266-54-600468999999861-98-999908879898989999
Q gi|254781102|r 358 IYVDY--AHTSNSLEMILKNIRTITSGRII--VVFGCGG-DR-DQGKRPIMGKIALDL-AD-IAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 358 viiDy--ahNP~s~~~aL~~l~~~~~~r~i--~V~G~~G-dr-d~~kr~~mg~~a~~~-ad-~vi~t~d~~r~e~~~~I~ 429 (497)
-+.|| +.+++.+..+++.+-.-++-|.| -||| | -| |.-.+ -+.+.+.++ .+ .+|+--.-|+.|.-.+|+
T Consensus 285 Nfld~gG~a~~e~v~~a~kiil~d~~vk~iliNIfG--GI~rcd~vA~-GIi~A~~~~~~~vpivVRl~Gtn~eeg~~il 361 (388)
T 2nu8_B 285 NFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFG--GIVRCDLIAD-GIIGAVAEVGVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEES--CSSCHHHHHH-HHHHHHHHHTCCSCEEEEEESTTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC--CHHHHHHHHH-HHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 268736999789999999998659996589999607--6455899999-9999999709998789999989989999999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHCCC
Q ss_conf 99983479809978989999999996589
Q gi|254781102|r 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458 (497)
Q Consensus 430 ~~i~~g~~~~~~~~dr~eAi~~A~~~a~~ 458 (497)
++ +|++ +....|..||++.|+++++.
T Consensus 362 ~~--~gl~-i~~~~~l~~Aa~~~V~~~~g 387 (388)
T 2nu8_B 362 AD--SGLN-IIAAKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp HT--TCSS-EEECSSHHHHHHHHHHHTTT
T ss_pred HH--CCCC-EEECCCHHHHHHHHHHHHCC
T ss_conf 97--8998-68708999999999998559
No 207
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=27.31 E-value=12 Score=15.44 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=15.7
Q ss_pred EEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 456543--065200012333332
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~ 138 (497)
|.++|. .||||+..+++.-|.
T Consensus 5 Iil~G~~GsGKSTiak~La~~L~ 27 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999988999999999969
No 208
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=27.13 E-value=13 Score=15.25 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.0
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..+++|.|-| ||||.-.+++-++.
T Consensus 29 ~Ge~~~iiGpsGsGKSTLl~~i~gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 998999999999849999999971789
No 209
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=26.80 E-value=10 Score=15.97 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=26.3
Q ss_pred EEEECC---CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 023000---3786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 357 RIYVDY---AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 357 ~viiDy---ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.+|.|- +=-|.+-+..++.++++..++.+++.- +|.. . .+.||.|++-.
T Consensus 211 ililDEpTs~LD~~t~~~i~~~l~~l~~~~TvI~it--------H~l~---~-~~~aDrIivl~ 262 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAKVCANRTTIVVA--------HRLS---T-VVNADQILVIK 262 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEEC--------CSHH---H-HHTCSEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE--------CCHH---H-HHHCCEEEEEE
T ss_conf 999969865789899999999999985899899992--------7999---9-98599999998
No 210
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=26.79 E-value=13 Score=15.32 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCEEEECCCCC-CCCCHHHH---H---HHHHHC-CCCEEEE-CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6899999986198999908879-89898999---9---999834-7980997-89899999999965898899994
Q gi|254781102|r 399 RPIMGKIALDLADIAIVTDDNP-RSEDPEKI---R---AEIIHG-IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 399 r~~mg~~a~~~ad~vi~t~d~~-r~e~~~~I---~---~~i~~g-~~~~~~~-~dr~eAi~~A~~~a~~gDvili~ 465 (497)
|-.+++......+.+++ |.| ++-|+... . .++.+. -..++.+ -|+.++...| |-|++.
T Consensus 409 Rv~lAral~~~p~lLiL--DEPT~gLD~~~~~~l~~~l~~l~~~~~~tvi~vsHD~~~~~~~~-------dri~vl 475 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLL--DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS-------DRLMVF 475 (538)
T ss_dssp HHHHHHHHTSCCSEEEE--ECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC-------SEEEEE
T ss_pred HHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHC-------CEEEEE
T ss_conf 99999998459998999--79986659999999999999999867998999968899999869-------999999
No 211
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=26.71 E-value=14 Score=15.19 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=16.9
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 2456543--065200012333332
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
.|-++|. .||||+..+++.-|.
T Consensus 6 ~Iil~G~~GsGKtTi~k~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499986899989999999999959
No 212
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=26.27 E-value=17 Score=14.52 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=5.6
Q ss_pred CCCEEEEC-CCCC
Q ss_conf 44035402-6654
Q gi|254781102|r 383 RIIVVFGC-GGDR 394 (497)
Q Consensus 383 r~i~V~G~-~Gdr 394 (497)
++++|-|. ||.|
T Consensus 790 ~~~liTGPNmgGK 802 (1022)
T 2o8b_B 790 YCVLVTGPNMGGK 802 (1022)
T ss_dssp CEEEEECCTTSSH
T ss_pred EEEEEECCCCCCH
T ss_conf 2899978998861
No 213
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=26.20 E-value=25 Score=13.46 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=58.8
Q ss_pred EEEECCCCCCC--CCEEEEECCCCCCHH------HHHHHHHHCCCEEEEECCCCCCCCCCCCC-----CCCCCEEEECCH
Q ss_conf 24530231468--988998038876768------88999998598899984732233343223-----479709997998
Q gi|254781102|r 32 EVSSDSRHIQA--GWIFVAIVGNKEDGH------LFIPQAIAQGAEAIVVSSAYSLQDFSATI-----RSNTPILVVDNT 98 (497)
Q Consensus 32 ~i~~DSr~v~~--g~lFval~G~~~dGh------~fi~~A~~~GA~~~i~~~~~~~~~~~~~~-----~~~~p~i~V~d~ 98 (497)
..-.++...++ +-+|+.+.|+..=.. -+.+-|-+-||..+..|..+..+..+... ..+..++ .+
T Consensus 26 RY~~n~~~~~~~~~pv~l~~gGEg~~~~~~~~~~~~~~lA~~~~a~~~~lEHRyyG~S~P~~~~s~~~~~nL~yL---T~ 102 (446)
T 3n2z_B 26 RYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFL---TS 102 (446)
T ss_dssp EEEEECTTCCTTTCEEEEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTTGGGGGSCTTTSTTC---SH
T ss_pred EEEEECCEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCC---CH
T ss_conf 899853345589988899979986664544677579999998499499985214647768898775675665407---89
Q ss_pred HHHHHHHHH---HHHCCC----CCCEEEEEEEECCCEE
Q ss_conf 999999999---982762----0022456543065200
Q gi|254781102|r 99 RKFLSLFAS---RLYGKH----PENILAVTGTSGKSSV 129 (497)
Q Consensus 99 ~~aL~~la~---~~~~~~----~~~vIgITGTnGKTTt 129 (497)
.+||..+|. .+.... ..++|.+-||.|=...
T Consensus 103 ~QAlaDla~Fi~~~k~~~~~~~~~~wI~~GGSY~G~la 140 (446)
T 3n2z_B 103 EQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLA 140 (446)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHH
T ss_conf 99999999999999986377789998997886288899
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.18 E-value=13 Score=15.34 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.4
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 224565430--65200012333332
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+-|.|||.. ||||.+..|+.-|.
T Consensus 12 pnI~i~G~pG~GKTTiak~La~~l~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9579989999888999999999969
No 215
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=26.00 E-value=12 Score=15.52 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=21.1
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.+..+++|.|.| ||||.-.|++-++..
T Consensus 24 ~~Ge~~~l~GpsGsGKSTll~~iaGl~~p 52 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99989999999997499999999759998
No 216
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=25.25 E-value=14 Score=15.16 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..+++|.|-| ||||+-.|++-+++.
T Consensus 28 ~Ge~~~llGpsGsGKsTll~~iaGl~~p 55 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999998699999999759998
No 217
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=25.23 E-value=21 Score=14.01 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHH-HHCCCCEEEECCHHH
Q ss_conf 9997412110023444035402665460046899999986198999908879898989999999-834798099789899
Q gi|254781102|r 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIE 447 (497)
Q Consensus 369 ~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i-~~g~~~~~~~~dr~e 447 (497)
+...++.+++. .+.++++ +|||..- .++.+......-+|+|.+.+ .++.+.+.. ..|++=.....|-.+
T Consensus 41 ~~~~~~~~~~~-~~~lvi~---~gdR~di---~l~al~~~~~a~lIlTg~~~---p~~~vl~la~~~gipvi~t~~dT~~ 110 (139)
T 2ioj_A 41 PQSALRYLREA-RNAALVT---GGDRSDL---LLTALEMPNVRCLILTGNLE---PVQLVLTKAEERGVPVILTGHDTLT 110 (139)
T ss_dssp HHHHHHHHHTC-SSEEEEE---ETTCHHH---HHHHTTCTTEEEEEEETTCC---CCHHHHHHHHHHTCCEEECSSCHHH
T ss_pred HHHHHHHHHCC-CCEEEEE---ECCCHHH---HHHHHHCCCCEEEEEECCCC---CCHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 89999997348-9728999---5893789---99998578963999939999---7899999998769948994787999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781102|r 448 AIRTA 452 (497)
Q Consensus 448 Ai~~A 452 (497)
+.+..
T Consensus 111 ta~~i 115 (139)
T 2ioj_A 111 AVSRL 115 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 218
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=24.91 E-value=25 Score=13.45 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=21.9
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 24565430--652000123333321023222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
.|.|-|-. ||||+...+++-|...|..+.
T Consensus 14 rI~iEG~~GsGKTT~~~~L~e~l~~~~~~v~ 44 (341)
T 1osn_A 14 RIYLDGAYGIGKTTAAEEFLHHFAITPNRIL 44 (341)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999888678899999999998711698669
No 219
>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} SCOP: c.37.1.20
Probab=24.89 E-value=24 Score=13.54 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCCCCE--EEEEEEECCCEEHHHHHHHHH
Q ss_conf 620022--456543065200012333332
Q gi|254781102|r 112 KHPENI--LAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~v--IgITGTnGKTTt~~~l~~iL~ 138 (497)
.++.++ +|=|| .|||-.+.-++.++.
T Consensus 70 ~p~~niLflGPTG-vGKTElAk~LAk~~~ 97 (376)
T 1um8_A 70 LSKSNILLIGPTG-SGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCCEEEECCTT-SSHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCC-CCHHHHHHHHHHHCC
T ss_conf 8876157669897-779999999986354
No 220
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, aromatic amino acid biosynthesis, NADP; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=24.82 E-value=26 Score=13.30 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=6.5
Q ss_pred CEEEECCCCCHHH
Q ss_conf 6023000378689
Q gi|254781102|r 356 GRIYVDYAHTSNS 368 (497)
Q Consensus 356 ~~viiDyahNP~s 368 (497)
..++.|-..||..
T Consensus 203 ~~~v~D~vY~P~~ 215 (277)
T 3don_A 203 HTLVSDIVYNPYK 215 (277)
T ss_dssp SCEEEESCCSSSS
T ss_pred CCEEEECCCCCCC
T ss_conf 8645444207889
No 221
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=24.60 E-value=15 Score=14.85 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.6
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 22456543--065200012333332
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
+-|-++|. .||||+..+|+.-|.
T Consensus 5 k~Iil~G~~GsGKSTv~k~La~~lg 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8399989999988999999999949
No 222
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=24.53 E-value=16 Score=14.71 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 022456543--065200012333332
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
.+-|.++|. .||||+...++.-|.
T Consensus 7 Mk~IiliG~~GsGKSTvak~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 67599989999989999999999969
No 223
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=24.51 E-value=15 Score=14.90 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.1
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..+++|.|.+ ||||.-.||+-++..
T Consensus 28 ~Ge~~~llGpsGsGKsTll~~iaGl~~p 55 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999985499999999749998
No 224
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=24.25 E-value=14 Score=15.15 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=6.5
Q ss_pred HHHHH-HCCEEEEC
Q ss_conf 99986-19899990
Q gi|254781102|r 404 KIALD-LADIAIVT 416 (497)
Q Consensus 404 ~~a~~-~ad~vi~t 416 (497)
+++.. ..|.+++.
T Consensus 271 ~~~~~~~ydl~~~l 284 (365)
T 1lw7_A 271 SMIKEYPFDVTILL 284 (365)
T ss_dssp HHHHHSCCSEEEEE
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99875399999984
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.08 E-value=9.8 Score=16.10 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=12.7
Q ss_pred CCCCCE--EEEEEEECCCEEHHHH
Q ss_conf 620022--4565430652000123
Q gi|254781102|r 112 KHPENI--LAVTGTSGKSSVASFV 133 (497)
Q Consensus 112 ~~~~~v--IgITGTnGKTTt~~~l 133 (497)
.++-+| ||.|| +||||+-+-|
T Consensus 40 ~~~~~ILvvG~tG-sGKST~iNsL 62 (427)
T 2qag_B 40 GFCFNILCVGETG-LGKSTLMDTL 62 (427)
T ss_dssp CCEEEEEEECSTT-SSSHHHHHHH
T ss_pred CCEEEEEEECCCC-CCHHHHHHHH
T ss_conf 8757999988999-9799999998
No 226
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.98 E-value=20 Score=14.02 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=18.6
Q ss_pred CCCCEEEEEEE--ECCCEEHHHHHHHH
Q ss_conf 20022456543--06520001233333
Q gi|254781102|r 113 HPENILAVTGT--SGKSSVASFVQQIC 137 (497)
Q Consensus 113 ~~~~vIgITGT--nGKTTt~~~l~~iL 137 (497)
...++|.|.|. .||||.+.+|+.-+
T Consensus 4 ~kp~iI~i~G~pGsGKsTia~~Lae~~ 30 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999996
No 227
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=23.85 E-value=18 Score=14.41 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=20.6
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 22456543--065200012333332102322
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
+.|+|.|. .||||....|++-|.. +..+
T Consensus 3 ~fI~ieG~dGsGKsT~~~~L~~~L~~-~~~v 32 (205)
T 2ccj_A 3 AFITFEGPEGSGKTTVINEVYHRLVK-DYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CCCE
T ss_conf 68999899887099999999999966-9988
No 228
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=23.81 E-value=28 Score=13.18 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=35.2
Q ss_pred HHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE---CCHHHHH----HHHHHHCCCCCEEEEECC------CC
Q ss_conf 9999861989999088798989899999998347980997---8989999----999996589889999446------88
Q gi|254781102|r 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAI----RTAIEMLNKQDVLVVAGK------GH 469 (497)
Q Consensus 403 g~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~---~dr~eAi----~~A~~~a~~gDvili~Gk------G~ 469 (497)
++...+.-..||+..-.|..+ -++....+.....++.++ .+.++-. +...+.|++|.+-=+.|- -.
T Consensus 435 a~~l~~~g~~VIvs~isp~~~-~R~~~r~~~~~~~~y~eIyl~~~le~~~kRD~KglY~ka~~g~i~n~~Gid~~ye~P~ 513 (552)
T 3cr8_A 435 ASEITKNRGIAICAPIAPYRQ-TRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPE 513 (552)
T ss_dssp HHHHHHTTCEEEECCCCCCHH-HHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCS
T ss_pred HHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCHHHHHHCCCCCCCEECCCCCCCCC
T ss_conf 999986899899997887999-9999999621049779999978999998707621556886699888400478898999
Q ss_pred CCCEEECCCEECCCCHHHHHHHHHHHH
Q ss_conf 663584497886799899999984430
Q gi|254781102|r 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 (497)
Q Consensus 470 e~~~~~~~~~~~~~~d~~~~~~~l~~~ 496 (497)
.+...+.+ . -.+-.+.+++++..|
T Consensus 514 ~~dl~Idt-~--~~s~~~~~~~Ii~~L 537 (552)
T 3cr8_A 514 TPELAIDT-T--GLAIDEAVQQILLKL 537 (552)
T ss_dssp SCSEEECC-S--SCCHHHHHHHHHHHH
T ss_pred CCCEEEEC-C--CCCHHHHHHHHHHHH
T ss_conf 98579969-9--999999999999999
No 229
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.68 E-value=18 Score=14.40 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=17.5
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 0224565430--65200012333332
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
..+..|+|-| ||||.-..+..+|-
T Consensus 23 ~gl~~i~G~NGsGKStil~Ai~~~L~ 48 (195)
T 1ii8_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (195)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 98089988899982008774677604
No 230
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest center for structural genomics, MCSG; 2.40A {Streptococcus pneumoniae TIGR4} SCOP: c.135.1.1
Probab=23.66 E-value=28 Score=13.16 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 976787866789887320335565557430024530231468988998038876768889999985988999847322
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~ 78 (497)
||+++++.. +.++.. ... ...|. =.|+...+..-.=..+.+|+.-. .+=+++|+++||-++|+-.+.-
T Consensus 3 M~~~~ii~~-le~~~P-~~~-a~~wD---n~GL~vg~~~~~V~~I~valD~t----~~vi~~Ai~~~~dlIItHHP~~ 70 (267)
T 2fyw_A 3 MLASEVIQA-YEAFCP-QEF-SMEGD---SRGLQIGTLDKGIQRVMVALDIR----EETVAEAIEKGVDLIIVKHAPI 70 (267)
T ss_dssp CBHHHHHHH-HHHHSC-GGG-SCTTC---CCEEEESCSSSBCSEEEEESCCC----HHHHHHHHHTTCSEEEESSCSC
T ss_pred CCHHHHHHH-HHHHCC-HHH-CCCCC---CCEEEECCCCCCCCEEEEEECCC----HHHHHHHHHCCCCEEEECCCCC
T ss_conf 389999999-998798-866-37768---75257268877618899996499----9999999986999999768622
No 231
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=23.64 E-value=28 Score=13.16 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEE--EECCCEEHHHHHHHHH
Q ss_conf 98999999999982762002245654--3065200012333332
Q gi|254781102|r 97 NTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQ 138 (497)
Q Consensus 97 d~~~aL~~la~~~~~~~~~~vIgITG--TnGKTTt~~~l~~iL~ 138 (497)
+....|..|...+.+.|+++-|-+.| .+|||+-+..|.+.|.
T Consensus 40 ~~~~fl~~l~~~l~g~PKknci~~~GPp~TGKS~fa~sL~~~l~ 83 (212)
T 1tue_A 40 EFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 39999999999970898622899988998668999999999856
No 232
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=23.56 E-value=28 Score=13.15 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=5.1
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 22210235653222
Q gi|254781102|r 256 VMKRAHNAGCRVLS 269 (497)
Q Consensus 256 l~~~~~~~~~~~~~ 269 (497)
..+.+++.+++++.
T Consensus 127 a~~~AK~~G~~vIa 140 (243)
T 3cvj_A 127 MAIESRNIGAKVIA 140 (243)
T ss_dssp HHHHHHHHTCEEEE
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999987994999
No 233
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=23.25 E-value=19 Score=14.25 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=12.6
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 224565430--6520001233333
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL 137 (497)
.+..|||-| ||||.-..|..+|
T Consensus 30 glt~I~G~NGsGKStildAI~~~L 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 848999488722999999999997
No 234
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=23.21 E-value=8.4 Score=16.53 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=11.0
Q ss_pred EEEEEEECCCEEHHHH
Q ss_conf 4565430652000123
Q gi|254781102|r 118 LAVTGTSGKSSVASFV 133 (497)
Q Consensus 118 IgITGTnGKTTt~~~l 133 (497)
||=||+ ||+|+...|
T Consensus 27 iG~tg~-GKStl~N~l 41 (247)
T 3lxw_A 27 VGRTGA-GKSATGNSI 41 (247)
T ss_dssp ESSTTS-SHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHH
T ss_conf 999998-299999999
No 235
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Probab=23.21 E-value=27 Score=13.26 Aligned_cols=27 Identities=19% Similarity=-0.004 Sum_probs=12.8
Q ss_pred HHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 861989999088798989899999998
Q gi|254781102|r 407 LDLADIAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 407 ~~~ad~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
...+|.+|+-----+++||..-+++..
T Consensus 273 ~~GaDiiVVGR~It~A~DP~~aA~~yr 299 (312)
T 3g3d_A 273 KRGSDIIIVGRGIISAADRLEAAEMYR 299 (312)
T ss_dssp TTCCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 659989998921368989999999999
No 236
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=23.16 E-value=22 Score=13.84 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=10.8
Q ss_pred ECCCCCCC---CCEEEEECCCCCC
Q ss_conf 30231468---9889980388767
Q gi|254781102|r 35 SDSRHIQA---GWIFVAIVGNKED 55 (497)
Q Consensus 35 ~DSr~v~~---g~lFval~G~~~d 55 (497)
+|+-+..| |.+||-=.|.-+|
T Consensus 47 vD~GtmsP~eHGEVfVt~DG~EtD 70 (535)
T 3nva_A 47 VDAGTMNPYMHGEVFVTEDGAETD 70 (535)
T ss_dssp SSSTTCCHHHHCCCEECTTCCEEC
T ss_pred CCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 589988866575278888874014
No 237
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=23.10 E-value=17 Score=14.62 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 0224565430--652000123333321
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
..+++|.|-+ ||||+-.||+-++..
T Consensus 29 Ge~~~llGpsG~GKSTllr~iaGl~~p 55 (381)
T 2awn_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999998299999999759998
No 238
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=23.01 E-value=29 Score=13.08 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 899997412110023
Q gi|254781102|r 367 NSLEMILKNIRTITS 381 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~ 381 (497)
+.+...|...-.+..
T Consensus 358 ~~l~~~L~~~~~~~~ 372 (467)
T 2axq_A 358 DTLCARLEELMQYED 372 (467)
T ss_dssp HHHHHHHHHHSBCCT
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999887545689
No 239
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in europe, spine, structural genomics; 2.00A {Mycobacterium tuberculosis H37RV}
Probab=22.96 E-value=29 Score=13.07 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=7.3
Q ss_pred EECCCC-------CCCCCEEEE
Q ss_conf 530231-------468988998
Q gi|254781102|r 34 SSDSRH-------IQAGWIFVA 48 (497)
Q Consensus 34 ~~DSr~-------v~~g~lFva 48 (497)
|.|||- ..+|++|+-
T Consensus 44 CsDSRv~pe~if~~~~Gd~fvv 65 (172)
T 1ylk_A 44 CMDARLDVYRMLGIKEGEAHVI 65 (172)
T ss_dssp ECCTTCCHHHHHTCCTTSEEEE
T ss_pred ECCCCCCHHHHHCCCCCCEEEE
T ss_conf 5588979999839999758999
No 240
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=22.91 E-value=8.7 Score=16.45 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=10.5
Q ss_pred EEEECCHHHHHHHHHHHHH
Q ss_conf 9997998999999999982
Q gi|254781102|r 92 ILVVDNTRKFLSLFASRLY 110 (497)
Q Consensus 92 ~i~V~d~~~aL~~la~~~~ 110 (497)
++.+.=+++|-.++-..+.
T Consensus 57 Il~lTFT~~Aa~E~~~Ri~ 75 (680)
T 2is6_A 57 IMAVTFTNKAAAEMRHRIG 75 (680)
T ss_dssp EEEEESSHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
T ss_conf 9888021999999999999
No 241
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=22.80 E-value=24 Score=13.52 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=10.3
Q ss_pred ECCCCCCC---CCEEEEECCCCCC
Q ss_conf 30231468---9889980388767
Q gi|254781102|r 35 SDSRHIQA---GWIFVAIVGNKED 55 (497)
Q Consensus 35 ~DSr~v~~---g~lFval~G~~~d 55 (497)
+|+-+..| |.+||-=.|.-+|
T Consensus 47 vD~GtmsP~eHGEVfV~~DG~EtD 70 (545)
T 1s1m_A 47 VDPGTMSPIQHGEVFVTEDGAETD 70 (545)
T ss_dssp SCGGGSCTTTSCCCEECTTSCEEC
T ss_pred CCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 489988976575378888873014
No 242
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=22.78 E-value=15 Score=14.98 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=20.3
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.+..+++|.|-+ ||||+-.|++-+++.
T Consensus 29 ~~Ge~~~i~GpsGsGKSTllr~iaGl~~p 57 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999997599999999739998
No 243
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=22.55 E-value=29 Score=13.02 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf 02676763111234433455210001355786023000378689999741211002-3444035
Q gi|254781102|r 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387 (497)
Q Consensus 325 lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~V 387 (497)
..++.+++.+-+..+-+..-... +......+.-+++|. |++.++.|++.+.... .||.|.|
T Consensus 38 ~~~t~~dl~~~f~~~g~~v~~~~-~~~~~~~G~afV~f~-~~e~A~~Ai~~l~g~~~~Gr~I~V 99 (111)
T 2jvr_A 38 EGCSWQDLKDLARENSLETTFSS-VNTRDFDGTGALEFP-SEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCCCHHHHHHHHHHHTCCCSEEE-CSSCSSSCCEEEEES-SHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCEEEEE-CCCCCCCCEEEEEEC-CHHHHHHHHHHHCCCEECCEEEEE
T ss_conf 99999999999987098089998-526897886999969-889999999982998889988999
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=22.43 E-value=26 Score=13.37 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=10.9
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEECC
Q ss_conf 57430024530231468988998038
Q gi|254781102|r 26 RERKINEVSSDSRHIQAGWIFVAIVG 51 (497)
Q Consensus 26 ~d~~i~~i~~DSr~v~~g~lFval~G 51 (497)
.|-+|+.|.+++ ++.+|+-..|
T Consensus 34 ~Dp~V~eI~in~----~~~v~v~~~g 55 (361)
T 2gza_A 34 DDPQITEVCVNR----PGEVFCERAS 55 (361)
T ss_dssp SCTTEEEEEESS----TTEEEEEETT
T ss_pred HCCCCEEEEECC----CCEEEEEECC
T ss_conf 199977999868----9989999999
No 245
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=22.41 E-value=18 Score=14.46 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHH
Q ss_conf 200224565430--65200012333
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQ 135 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~ 135 (497)
++..++||.|-| ||||.-.++.-
T Consensus 27 ~~Gei~~liG~nGaGKSTL~~~i~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6997999988899899999999856
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.37 E-value=27 Score=13.28 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=25.2
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 9979989999999999827620022456543--065200012333332
Q gi|254781102|r 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 93 i~V~d~~~aL~~la~~~~~~~~~~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
+.-++..+.|..+.+ .....+++ ++|. .||||++..++.-+.
T Consensus 40 vg~~~~~~~L~~~i~---~~~~~~lL-l~Gp~G~GKTt~a~~la~~~~ 83 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLK---SANLPHML-FYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CSCCTTHHHHHHHTT---CTTCCCEE-EECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCEEE-EECCCCCCHHHHHHHHHHHCC
T ss_conf 396999999999997---69987599-889599989999999998447
No 247
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=22.36 E-value=29 Score=13.00 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 12333332102322
Q gi|254781102|r 131 SFVQQICQRSGLSS 144 (497)
Q Consensus 131 ~~l~~iL~~~g~~~ 144 (497)
.|+..++...|.+.
T Consensus 92 ~lLGrViD~lG~Pl 105 (469)
T 2c61_A 92 DLLGRILSGSGEPR 105 (469)
T ss_dssp GGTTCEEETTSCBS
T ss_pred CCCCCEECCCCCCC
T ss_conf 40668775477605
No 248
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=22.24 E-value=30 Score=12.98 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=16.7
Q ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 9998619899990887989898999999983
Q gi|254781102|r 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 (497)
Q Consensus 404 ~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~ 434 (497)
+.....+|.+|+-.---+++||.+-++++.+
T Consensus 173 ~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~ 203 (208)
T 2czd_A 173 DAVKAGADYIIVGRAIYNAPNPREAAKAIYD 203 (208)
T ss_dssp HHHHHTCSEEEECHHHHTSSSHHHHHHHHHH
T ss_pred HHHHCCCCEEEECHHHCCCCCHHHHHHHHHH
T ss_conf 9998199999989555379899999999999
No 249
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=21.84 E-value=30 Score=12.93 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 98999999999982762002245654306
Q gi|254781102|r 97 NTRKFLSLFASRLYGKHPENILAVTGTSG 125 (497)
Q Consensus 97 d~~~aL~~la~~~~~~~~~~vIgITGTnG 125 (497)
.+.+-|..+.+.++.. .+-||..-|-|
T Consensus 26 ~t~~elr~~~~~~r~~--g~~IgfVPTMG 52 (314)
T 3inn_A 26 HTIEELRQALAPARQQ--GKKIGFVPTMG 52 (314)
T ss_dssp CSHHHHHHHHHHHHHT--TCCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEECCCC
T ss_conf 6899999999999973--99599986862
No 250
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.83 E-value=30 Score=12.93 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=15.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf 889980388767688899999859889998473
Q gi|254781102|r 44 WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 (497)
Q Consensus 44 ~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~ 76 (497)
++.|+--+...-.+.....|-++|.-+-+++++
T Consensus 74 ~lvi~at~d~~~n~~i~~~a~~~~~lvN~~d~~ 106 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETTCT
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 399985799999999999999859889978884
No 251
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=21.71 E-value=27 Score=13.23 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=15.6
Q ss_pred CEEEEEEE----ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 22456543----0652000123333321023222
Q gi|254781102|r 116 NILAVTGT----SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 116 ~vIgITGT----nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
|.|-|||- -||..|+.=+..+|+..|+++.
T Consensus 13 KyifVtGGV~S~lGKGi~aaSig~lLk~~g~~V~ 46 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVT 46 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 5999838712157308999999999997897577
No 252
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.62 E-value=17 Score=14.49 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.9
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..+++|.|-| ||||+-.|++-++..
T Consensus 40 ~Ge~~~llGpsGsGKSTllr~iaGl~~p 67 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999984599999999759988
No 253
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=21.52 E-value=24 Score=13.52 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=12.4
Q ss_pred HHCCCCCCEEEEEEEECCCEEHH
Q ss_conf 82762002245654306520001
Q gi|254781102|r 109 LYGKHPENILAVTGTSGKSSVAS 131 (497)
Q Consensus 109 ~~~~~~~~vIgITGTnGKTTt~~ 131 (497)
+..+...-+++-||| |||-+.-
T Consensus 105 ~~~~~~gll~~pTGs-GKT~ial 126 (237)
T 2fz4_A 105 WLVDKRGCIVLPTGS-GKTHVAM 126 (237)
T ss_dssp HTTTSEEEEEESSST-THHHHHH
T ss_pred HHHCCCCEEEECCCC-CHHHHHH
T ss_conf 996899699938999-8889999
No 254
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=21.48 E-value=20 Score=14.12 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=19.7
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..+++|.|-+ ||||.-.+|+-+++.
T Consensus 29 ~Ge~~~ilGpsGsGKSTllr~i~Gl~~p 56 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999986499999999749999
No 255
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=21.37 E-value=18 Score=14.40 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=16.5
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..+++|-|.+ ||||.-.+++-++.
T Consensus 30 ~Ge~~~ivG~SGsGKSTLl~~i~gl~~ 56 (235)
T 1l2t_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 998999988999989999999980789
No 256
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=21.04 E-value=31 Score=12.82 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCCHHHH
Q ss_conf 77888775202676763
Q gi|254781102|r 316 LVAAGLCIAIGIDSALV 332 (497)
Q Consensus 316 laAia~a~~lGi~~~~i 332 (497)
.+..+++..+|+++...
T Consensus 125 Ss~~aa~a~~Glp~~~~ 141 (268)
T 1vhv_A 125 SISTAVCGLTGLHNYRF 141 (268)
T ss_dssp CHHHHHHHHHCCCGGGB
T ss_pred CHHHHHHHHHCCCCCCC
T ss_conf 69999999839985667
No 257
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A*
Probab=21.04 E-value=31 Score=12.82 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=12.4
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 0999799899999999998276200224565
Q gi|254781102|r 91 PILVVDNTRKFLSLFASRLYGKHPENILAVT 121 (497)
Q Consensus 91 p~i~V~d~~~aL~~la~~~~~~~~~~vIgIT 121 (497)
|-++++|--.....+ ...+.....+++|+|
T Consensus 123 P~liiDDGgDl~~~~-~~~~~~l~~~iiG~~ 152 (436)
T 3h9u_A 123 PNMLLDDGGDLTNYV-LDECKELDGKIYGVS 152 (436)
T ss_dssp CSEEEESSSHHHHHH-HHHC-CCTTTCCCEE
T ss_pred EEEEEECCCHHHHEE-CCCCCCCCCCEEEEE
T ss_conf 258983100022000-133442100124212
No 258
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=20.92 E-value=31 Score=12.81 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 6899997412110023444035402665
Q gi|254781102|r 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393 (497)
Q Consensus 366 P~s~~~aL~~l~~~~~~r~i~V~G~~Gd 393 (497)
-..+..+.+.+++......-++||+.=|
T Consensus 273 l~ev~~~~~~I~~~~~~~a~ii~G~~~d 300 (394)
T 2vaw_A 273 LGEYSDVGNIIEQFASEHATVKVGTVID 300 (394)
T ss_dssp HHHHHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 9999999988987427898599987787
No 259
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=20.55 E-value=32 Score=12.76 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf 2676763111234433455210001355786023000378689999741211002-3444035
Q gi|254781102|r 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387 (497)
Q Consensus 326 Gi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~V 387 (497)
+++.+++.+-+..|-.+ +.+........-+|.|. ++++..+|++.++... .||.+-|
T Consensus 48 ~~te~~L~~~F~~~G~I----~~v~i~~~~g~afV~f~-~~~~A~~Ai~~lng~~i~gr~l~V 105 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNI----IDLSMDPPRNCAFVTYE-KMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp SCCHHHHHHHHSTTCCC----SCEEEETTTTEEEEECS-SHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCHHHHHHHHHHCCCE----EEEEEECCCCEEEEEEC-CHHHHHHHHHHHCCCEECCEEEEE
T ss_conf 89999999999714988----77577356988999979-899999999986998899999899
No 260
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=20.53 E-value=21 Score=14.01 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=17.0
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 00224565430--65200012333332
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+..++||.|-+ ||||...++.-+++
T Consensus 30 ~Ge~~~ivG~SGsGKSTLlr~i~gL~~ 56 (343)
T 3dhw_C 30 AGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999998349999999975999
No 261
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=20.48 E-value=25 Score=13.43 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=16.0
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 0224565430--6520001233333
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
..+..|+|-| ||||.-+-|..+|
T Consensus 26 ~g~~~I~G~NGsGKSsildAi~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf 9957999999997214767778641
No 262
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B}
Probab=20.41 E-value=32 Score=12.74 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=10.7
Q ss_pred HHHHHHHHHHCCCEEEEECC
Q ss_conf 68889999985988999847
Q gi|254781102|r 56 GHLFIPQAIAQGAEAIVVSS 75 (497)
Q Consensus 56 Gh~fi~~A~~~GA~~~i~~~ 75 (497)
|..-+..-.++||..+++++
T Consensus 29 G~aiA~~la~~Ga~V~~~~~ 48 (271)
T 3ek2_A 29 AYGIAKACKREGAELAFTYV 48 (271)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999986999999958
No 263
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.33 E-value=22 Score=13.85 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 0224565430--6520001233333
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
..+..|+|.| ||||.-+.+..+|
T Consensus 23 ~~~~vi~G~Ng~GKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 9839999999997437999999986
No 264
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.29 E-value=20 Score=14.03 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=15.2
Q ss_pred EEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 456543--065200012333332
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~ 138 (497)
|-++|. .||||+..+++.-|.
T Consensus 5 Ivl~G~~GsGKSTv~~~LA~~lg 27 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999988999999999969
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=20.23 E-value=32 Score=12.71 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=9.0
Q ss_pred ECCHHHHHHHHHHHCC
Q ss_conf 7898999999999658
Q gi|254781102|r 442 KGNRIEAIRTAIEMLN 457 (497)
Q Consensus 442 ~~dr~eAi~~A~~~a~ 457 (497)
+...+|.++++-++++
T Consensus 456 vg~~ee~~~kaka~~~ 471 (473)
T 1sky_E 456 VGRIEEVVEKAKAMGV 471 (473)
T ss_dssp BSSSHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 0759999999987645
No 266
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP}
Probab=20.10 E-value=33 Score=12.70 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=45.4
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCCHHHHHHHHHHHHCCEEEECCCCCCCCCHH------
Q ss_conf 78602300037868999974121100234440354026654-60046899999986198999908879898989------
Q gi|254781102|r 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPE------ 426 (497)
Q Consensus 354 ~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdr-d~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~------ 426 (497)
.++.+++|..-+ +.+..+++.++ +.|+ ++++|..... +... ..-....+..-.............+.
T Consensus 213 ~g~D~vid~~G~-~~~~~~~~~l~--~~G~-~v~~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (333)
T 1wly_A 213 KGVDVVYDSIGK-DTLQKSLDCLR--PRGM-CAAYGHASGVADPIR--VVEDLGVRGSLFITRPALWHYMSNRSEIDEGS 286 (333)
T ss_dssp CCEEEEEECSCT-TTHHHHHHTEE--EEEE-EEECCCTTCCCCCCC--HHHHTTTTTSCEEECCCGGGGSCSHHHHHHHH
T ss_pred CCCEEEEECCCH-HHHHHHHHHHC--CCCE-EEEECCCCCCCCCHH--HHHHHHHHEEEEEEEEEEEEECCCHHHHHHHH
T ss_conf 992099989698-99999999850--4979-999835678765103--55664310489998641003227999999999
Q ss_pred -HHHHHHHHCC-CC----EEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf -9999998347-98----09978989999999996589889999
Q gi|254781102|r 427 -KIRAEIIHGI-PG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 427 -~I~~~i~~g~-~~----~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
.+.+.+.+|. .. .....|..||.+...+.-..|-+||.
T Consensus 287 ~~~~~~~~~g~l~~~i~~~~~l~~~~eA~~~~~~~~~~GKvvl~ 330 (333)
T 1wly_A 287 KCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLL 330 (333)
T ss_dssp HHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99999998799835240798399999999999769986129998
Done!