RPSBLAST alignment of GI: 254781102 and protein with PDBid: 1p3d
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475
Score = 137 bits (346), Expect = 5e-33
Identities = 78/418 (18%), Positives = 140/418 (33%), Gaps = 48/418 (11%)
Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGT 123
+GA +VVSSA I+ + P LV + + +AV GT
Sbjct: 76 EGASVVVVSSA---------IKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGT 126
Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
GK++ + + I ++ L + + S ++ L
Sbjct: 127 HGKTTTTAMISMIYTQAKLDPTFVN-GGLVKSAGKNAHLGASR----------------- 168
Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
++ EA L + + TN+ DH+D ++ A F LP
Sbjct: 169 YLIAEADESDASFLHL---QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGL 225
Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFD 301
A++ ADD +M+ G +V++ G+ + + + Q I + +
Sbjct: 226 AVMCADDPV---LMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERIN 282
Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RI 358
L +PG+ NA A + GI + +LE L RF+ +G R R+
Sbjct: 283 VLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRL 342
Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
DY H + + +K R RI+++F L D I+ D
Sbjct: 343 VDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLD 402
Query: 418 DNPRSEDPEKI--RAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
E P + I I + + +++ D+++ G G
Sbjct: 403 VYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460