HHsearch alignment for GI: 254781103 and conserved domain: COG5009
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=411.66 Aligned_cols=266 Identities=27% Similarity=0.375 Sum_probs=222.3
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf 31112230232032111210014731113444323222223324566432012356544302403204421336763222
Q gi|254781103|r 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG 362 (598)
Q Consensus 283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~ 362 (598)
T Consensus 420 ~gAlVsmdp~tG~I~AlVGGfsf~~---------SkFNRATQA~rQPGSsfKPfvYsAALd~G-~T~asvi~Da-Pi~~~ 488 (797)
T COG5009 420 NGALVSLDPKTGAILALVGGFSFAQ---------SKFNRATQALRQPGSSFKPFVYSAALDKG-LTPASVINDA-PISFW 488 (797)
T ss_pred CCCEEEEECCCCEEEEEECCCCCCH---------HHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCHHHEECCC-CEEEE
T ss_conf 5626997079870899863634322---------24447777641798521278999998649-9876701378-84664
Q ss_pred ------CCCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------1011234543-230039998550367123543202333320011012225763446865421111223355441
Q gi|254781103|r 363 ------KHVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIH 435 (598)
Q Consensus 363 ------~~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~ 435 (598)
T Consensus 489 ~~~~~~~W~PkNy~gk~~Gp~~lR~gL~qSrNl~aVR~l~~vG~d~~~ey~~rfG~~~d---~~~--------------~ 551 (797)
T COG5009 489 DGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVDYAAEYIKRFGFYTD---ELP--------------P 551 (797)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC---CCC--------------C
T ss_conf 69988752778889875673389999997012899999998575999999998497745---668--------------5
Q ss_pred CEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC---------C-------------------CCCCC
Q ss_conf 0011468752130010022110011078230108999863078850---------3-------------------20189
Q gi|254781103|r 436 SLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV---------S-------------------RIVLK 487 (598)
Q Consensus 436 ~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~---------~-------------------~~vis 487 (598)
T Consensus 552 ~~smALG-s~e~Tplqma~AYaVfaNGG~~VeP~~I~~I~Dr~Gkvif~~~p~~~~~~~~~~~~~~~~~~~~~~~~qVid 630 (797)
T COG5009 552 VLSMALG-SGETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVID 630 (797)
T ss_pred CCCEECC-CCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4121114-335428998766763106980756444453654888667535815654422332235555432235240268
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCEE-EEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE--ECCCCC
Q ss_conf 99999999999987338846410479735-766724035126887668862179999974288809999998--078888
Q gi|254781103|r 488 KNTVKTMRSLLREGVTGGSGRRAFVPGFE-VGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFM--DSPKIK 564 (598)
Q Consensus 488 ~~~a~~l~~~l~~vv~~GTg~~a~~~g~~-vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v--~~p~~~ 564 (598)
T Consensus 631 ~~~ay~itsml~~vv~~GT~~~a~~L~r~DiAGKTGTTN---------d~kDAWfvGy~P----~~Vt~vwvGfD~~rsL 697 (797)
T COG5009 631 PMTAYQITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTN---------DSKDAWFVGYTP----DLVTGVWVGFDHPRSL 697 (797)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC---------CCCCEEEECCCC----CEEEEEEEECCCCCCC
T ss_conf 337899999998888603377787439854366777778---------765526733689----8268999866898667
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 888743214678999999999999818
Q gi|254781103|r 565 ERNQLTAGINVAPMVGNIIRRSASMLG 591 (598)
Q Consensus 565 ~~~~~~Gg~~AaPi~~~I~~~~~~~~~ 591 (598)
T Consensus 698 -G~~~tG~~~A~Piw~~fM~~alk~~P 723 (797)
T COG5009 698 -GRGETGGKLALPIWIDFMKVALKGKP 723 (797)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf -67777877566469999999973898