HHsearch alignment for GI: 254781103 and conserved domain: COG5009

>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=411.66  Aligned_cols=266  Identities=27%  Similarity=0.375  Sum_probs=222.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf             31112230232032111210014731113444323222223324566432012356544302403204421336763222
Q gi|254781103|r  283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG  362 (598)
Q Consensus       283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~  362 (598)
T Consensus       420 ~gAlVsmdp~tG~I~AlVGGfsf~~---------SkFNRATQA~rQPGSsfKPfvYsAALd~G-~T~asvi~Da-Pi~~~  488 (797)
T COG5009         420 NGALVSLDPKTGAILALVGGFSFAQ---------SKFNRATQALRQPGSSFKPFVYSAALDKG-LTPASVINDA-PISFW  488 (797)
T ss_pred             CCCEEEEECCCCEEEEEECCCCCCH---------HHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCHHHEECCC-CEEEE
T ss_conf             5626997079870899863634322---------24447777641798521278999998649-9876701378-84664


Q ss_pred             ------CCCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ------1011234543-230039998550367123543202333320011012225763446865421111223355441
Q gi|254781103|r  363 ------KHVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIH  435 (598)
Q Consensus       363 ------~~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~  435 (598)
T Consensus       489 ~~~~~~~W~PkNy~gk~~Gp~~lR~gL~qSrNl~aVR~l~~vG~d~~~ey~~rfG~~~d---~~~--------------~  551 (797)
T COG5009         489 DGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVDYAAEYIKRFGFYTD---ELP--------------P  551 (797)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC---CCC--------------C
T ss_conf             69988752778889875673389999997012899999998575999999998497745---668--------------5


Q ss_pred             CEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC---------C-------------------CCCCC
Q ss_conf             0011468752130010022110011078230108999863078850---------3-------------------20189
Q gi|254781103|r  436 SLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV---------S-------------------RIVLK  487 (598)
Q Consensus       436 ~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~---------~-------------------~~vis  487 (598)
T Consensus       552 ~~smALG-s~e~Tplqma~AYaVfaNGG~~VeP~~I~~I~Dr~Gkvif~~~p~~~~~~~~~~~~~~~~~~~~~~~~qVid  630 (797)
T COG5009         552 VLSMALG-SGETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVID  630 (797)
T ss_pred             CCCEECC-CCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             4121114-335428998766763106980756444453654888667535815654422332235555432235240268


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCEE-EEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE--ECCCCC
Q ss_conf             99999999999987338846410479735-766724035126887668862179999974288809999998--078888
Q gi|254781103|r  488 KNTVKTMRSLLREGVTGGSGRRAFVPGFE-VGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFM--DSPKIK  564 (598)
Q Consensus       488 ~~~a~~l~~~l~~vv~~GTg~~a~~~g~~-vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v--~~p~~~  564 (598)
T Consensus       631 ~~~ay~itsml~~vv~~GT~~~a~~L~r~DiAGKTGTTN---------d~kDAWfvGy~P----~~Vt~vwvGfD~~rsL  697 (797)
T COG5009         631 PMTAYQITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTN---------DSKDAWFVGYTP----DLVTGVWVGFDHPRSL  697 (797)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC---------CCCCEEEECCCC----CEEEEEEEECCCCCCC
T ss_conf             337899999998888603377787439854366777778---------765526733689----8268999866898667


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             888743214678999999999999818
Q gi|254781103|r  565 ERNQLTAGINVAPMVGNIIRRSASMLG  591 (598)
Q Consensus       565 ~~~~~~Gg~~AaPi~~~I~~~~~~~~~  591 (598)
T Consensus       698 -G~~~tG~~~A~Piw~~fM~~alk~~P  723 (797)
T COG5009         698 -GRGETGGKLALPIWIDFMKVALKGKP  723 (797)
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             -67777877566469999999973898