HHsearch alignment for GI: 254781103 and conserved domain: TIGR02074
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=100.00 E-value=0 Score=467.89 Aligned_cols=313 Identities=25% Similarity=0.368 Sum_probs=260.1
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCC----CC---------------------------------------------
Q ss_conf 68867425552576777776442100113----23---------------------------------------------
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKKY----NA--------------------------------------------- 281 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~----~a--------------------------------------------- 281 (598)
T Consensus 239 ~~Gl~iyTtlD~~~Q~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (700)
T TIGR02074 239 QGGLKIYTTLDLDMQKAAEKVLREGLREAGKQAGVRKSSESIILEELYEEKELLSLLSGLKTLLAKVRKVKKDAKKERVV 318 (700)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCHHCCC
T ss_conf 38989999448689999999997210223542014776112221232238887555414510133110011001110001
Q ss_pred ------------------------------------------------CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf ------------------------------------------------43111223023203211121001473111344
Q gi|254781103|r 282 ------------------------------------------------ESVGTVILNVSTGEVISMVSIPDYDPHEAFKG 313 (598)
Q Consensus 282 ------------------------------------------------~~gavVvmd~~TGeILAmas~P~~dpn~~~~~ 313 (598)
T Consensus 319 i~Li~g~~~~~~~~~~~~~~~~NK~~~~~~gvi~v~~~~~~~~~~~~~~q~A~V~~D~~TG~v~A~VGG~dy~~~v~--- 395 (700)
T TIGR02074 319 IDLIDGKAKIEIVDLLKAAKKDNKSVDLKKGVIVVKNKLGRALIAIPDLQAALVAIDPKTGAVRALVGGRDYGENVS--- 395 (700)
T ss_pred CCCCCCCEEHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCHHHHCCCCCEEEEEEECCCCEEEEEECCEECCCCCC---
T ss_conf 24754110023355567787617804421447998306870232053325006898458976899874612377764---
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHCC-CEECCCCCCCCCCCCC-------CCCCCCCCCCC-CCCCCHHHHHH
Q ss_conf 43232222233245664320123-565443024-0320442133676322-------21011234543-23003999855
Q gi|254781103|r 314 KKEGWFNRISYGIFEMGSIFKVF-TIAMGIDSG-LFTVKDLFDTRNPIKV-------GKHVIHDYHPQ-NRILTIPEIFR 383 (598)
Q Consensus 314 ~~~~~~Nra~~~~yePGStfKp~-t~aaaLe~g-~i~~~~~~~~~~~~~~-------~~~~i~~~~~~-~g~it~~~al~ 383 (598)
T Consensus 396 ---~~fNRAT~a~RQPGStfKPf~VY~~Ale~G~~~~~~~~~~D~-P~~~~~~~~~G~~w~P~Ny~g~y~G~vtl~~ALa 471 (700)
T TIGR02074 396 ---SQFNRATQAKRQPGSTFKPFAVYAAALEKGLKYTPASILDDE-PITYSGDPGNGGGWEPKNYGGKYRGNVTLRQALA 471 (700)
T ss_pred ---CCCCHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEC-CEEECCCCCCCCCCCEECCCCCEEECCCHHHHHH
T ss_conf ---464201000268651265799999999850434701033303-3453588898895030006881461332999975
Q ss_pred CCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCE----EEHHHCCCCCCH
Q ss_conf 036712354320233-332001101222576344686542111122335544100114687521----300100221100
Q gi|254781103|r 384 YSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLS----TTPLQTAVAAAA 458 (598)
Q Consensus 384 ~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~----~TPlqla~~~at 458 (598)
T Consensus 472 ~S~N~pAv~l~~~vG~~~~~~~~~~~~Gi~~~~~~---E---~------T~~~~~s~ALG-~~e~~~Gv~pl~~A~AYa~ 538 (700)
T TIGR02074 472 QSINIPAVKLLDEVGFLDKVVALAKRFGITSPELP---E---K------TLDPVLSLALG-TVESRKGVSPLEMASAYAV 538 (700)
T ss_pred HCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC---C---C------CCCCCCCEEEC-CCCCCCCCCHHHHHHHHHH
T ss_conf 12238999999870782799999997088787666---6---5------88875650106-6543447568999987677
Q ss_pred HHHCCEECCEEEEEEEECC-CCC------------------CCCCCCCHHHHHHHHHHHHHHHCCCCEEECC----CCCE
Q ss_conf 1107823010899986307-885------------------0320189999999999999873388464104----7973
Q gi|254781103|r 459 LINEGRLIPPTFMIRSREE-SEK------------------VSRIVLKKNTVKTMRSLLREGVTGGSGRRAF----VPGF 515 (598)
Q Consensus 459 iAN~G~~~~P~lv~~~~~~-~~~------------------~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~----~~g~ 515 (598)
T Consensus 539 FaN~G~~~eP~~I~~I~~~r~G~~~~~~~~~~~~a~~~~~~~~~~v~~~~~a~~m~~ml~~vv~-GTG~~A~~Y~~~~~~ 617 (700)
T TIGR02074 539 FANGGKYVEPHFIRKIVDRRDGKVLYENERDDVLAKLKAKPETTQVISPATAYIMTDMLKSVVE-GTGRSAREYDKLPGR 617 (700)
T ss_pred HHCCCEEECCEEEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEECCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
T ss_conf 6417800246379999864788363404777416653068876211288889999998878756-677877753430686
Q ss_pred EEEEECCEEEECCC--CCC--CCCCCEEEEEEEEECCCCEEEEEEEEECCCC------CCCC---CCCCHHHHHHHHHHH
Q ss_conf 57667240351268--876--6886217999997428880999999807888------8888---743214678999999
Q gi|254781103|r 516 EVGGKTGTAQKVIK--KRY--SDTLNFNSFLAVFPTTDPQYIVLSFMDSPKI------KERN---QLTAGINVAPMVGNI 582 (598)
Q Consensus 516 ~vaGKTGTAq~~~~--g~y--~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~------~~~~---~~~Gg~~AaPi~~~I 582 (598)
T Consensus 618 ~~AGKTGTT~~p~e~~~~y~~pSa~~D~WFvGyTP----~~v~aVW~G~D~~~~E~~~~~~~~a~~~~G~~~aa~~w~~f 693 (700)
T TIGR02074 618 PVAGKTGTTNNPEEETSKYIKPSAARDAWFVGYTP----YYVTAVWVGYDDKKKEYKLTLGKGALEVTGGGLAAPIWRDF 693 (700)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCC----CEEEEEEEEECCCCCCEEECCCCCEEEECCCCCCHHHHHHH
T ss_conf 32245488988713310343676554751350167----75899997404897431104665036515653107899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781103|r 583 IRRSAS 588 (598)
Q Consensus 583 ~~~~~~ 588 (598)
T Consensus 694 M~~a~~ 699 (700)
T TIGR02074 694 MAEALK 699 (700)
T ss_pred HHHHCC
T ss_conf 999605