HHsearch alignment for GI: 254781103 and conserved domain: pfam00905
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=100.00 E-value=0 Score=555.93 Aligned_cols=292 Identities=33% Similarity=0.529 Sum_probs=270.1
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCC
Q ss_conf 11122302320321112100147311134443232222233245664320123565443024032044213367632221
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGK 363 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~ 363 (598)
T Consensus 1 Ga~Vv~d~~TG~IlAm~~~p~~~~~~~----~~~~~n~a~~~~~~PGStfKp~~~aaaLe~g~~~~~~~~~~~~~~~~~~ 76 (296)
T pfam00905 1 GSAVVLDPKTGEVLAMAGKPSYDPNRD----KEPLRNRAVQDVYEPGSTFKIFTALAALDNGILKPEETFDDWPGLPVGG 76 (296)
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCC----CCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 959999899992999986898897876----6422218766865884899999999999879988761114776434799
Q ss_pred CCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 011234543-2300399985503671235432023333200110122257634468654211112233554410011468
Q gi|254781103|r 364 HVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFG 442 (598)
Q Consensus 364 ~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~G 442 (598)
T Consensus 77 ~~~~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~-~~~~~~~~~~~G 155 (296)
T pfam00905 77 YTIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLRDYLKKFGYGNKTGIGLPGESAGILPP-RYRGDGATTAWG 155 (296)
T ss_pred CCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHEEEE
T ss_conf 3224689998875549999985096778999997084789999997188877688886443566777-554310101010
Q ss_pred CC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEE
Q ss_conf 75-213001002211001107823010899986307885--032018999999999999987338846410479735766
Q gi|254781103|r 443 HG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEK--VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGG 519 (598)
Q Consensus 443 qg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~--~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaG 519 (598)
T Consensus 156 ~G~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~~~~~~is~~~a~~v~~~l~~vv~~gt~~-~~~~~~~vaG 234 (296)
T pfam00905 156 QGSLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLKLVVNDGGGA-AAVPGYKVAG 234 (296)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEE
T ss_conf 676622699999999998719968376999500147898222340389999999999998507788743-3468972689
Q ss_pred ECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 72403512688766886217999997428880999999807888888874321467899999999
Q gi|254781103|r 520 KTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIR 584 (598)
Q Consensus 520 KTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~ 584 (598)
T Consensus 235 KTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~~~~~~---~~~Gg~~AaPi~~~i~~ 296 (296)
T pfam00905 235 KTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDPKGD---GGAGGKVAAPIFKDILE 296 (296)
T ss_pred EEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCC---CCCHHHHHHHHHHHHHC
T ss_conf 982536658888878865899999998799829999998668989---98606899999999869