HHsearch results for GI: 254781103 and protein with PDBid: 1alq_A
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=99.27 E-value=1.6e-12 Score=97.10 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=115.1
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CEECCCCCCCCCCCCCC
Q ss_conf 11122302320321112100147311134443232222233245664320123565443024-03204421336763222
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSG-LFTVKDLFDTRNPIKVG 362 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g-~i~~~~~~~~~~~~~~~ 362 (598)
.++.++|..||++++. |+ ...|+|+||+|+++++++|++- ...+++.+..+......
T Consensus 60 ~gv~~~D~~tG~~~~~------n~----------------d~~~~~ASt~Kl~~a~~~l~~v~~g~ld~~v~i~~~~~~~ 117 (266)
T 1alq_A 60 IGVYALDTKSGKEVKF------NS----------------DKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVA 117 (266)
T ss_dssp EEEEEEETTTCCEEEE------ST----------------TSCEECGGGHHHHHHHHHHHSSCGGGTTCEEEECGGGCCS
T ss_pred EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHC
T ss_conf 9999999999988888------89----------------9835347899999999999972047877516753888633
Q ss_pred CCCCCCCCCCCCCCCH----HHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 1011234543230039----99855036712354320233-332001101222576344686542111122335544100
Q gi|254781103|r 363 KHVIHDYHPQNRILTI----PEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSL 437 (598)
Q Consensus 363 ~~~i~~~~~~~g~it~----~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~ 437 (598)
+......+. +..+++ ..++..|.|.....+.+.+| ++.+..+++.+|... +.++-. . +...
T Consensus 118 ~~~~~~~~~-g~~~tl~dll~~mi~~SdN~Aa~~L~~~lGg~~~~~~~~~~~G~~~-t~l~~~--~-~~~~--------- 183 (266)
T 1alq_A 118 YSPILEKYV-GKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKV-TNPVRY--E-IELN--------- 183 (266)
T ss_dssp SCTTGGGGT-TEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCS-CCCCCC--T-TGGG---------
T ss_pred CCCCCCCCC-CCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH-EECCCC--C-CCCC---------
T ss_conf 697310468-9723599999987754879999999999776168999999747322-762677--7-6555---------
Q ss_pred ECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCC-CCE
Q ss_conf 114687-521300100221100110782301089998630788503201899999999999998733884641047-973
Q gi|254781103|r 438 TISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFV-PGF 515 (598)
Q Consensus 438 ~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~-~g~ 515 (598)
....+. ....||.+|+..+..|..+ ..++++..+.+.++|.........-++.+ +|+
T Consensus 184 ~~~~~~~~n~tTa~d~a~ll~~l~~~---------------------~~ls~~~~~~l~~~m~~~~~~~~~l~~~lP~~~ 242 (266)
T 1alq_A 184 YYSPKSKKDTSTPAAFGKTLNKLIAN---------------------GKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDY 242 (266)
T ss_dssp CCCTTCCTTEECHHHHHHHHHHHTTS---------------------SSCCHHHHHHHHHHHHTCGGGTTTHHHHSCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
T ss_conf 67778744444999999999999857---------------------878999999999999639644300554399998
Q ss_pred EEEEECCEEE
Q ss_conf 5766724035
Q gi|254781103|r 516 EVGGKTGTAQ 525 (598)
Q Consensus 516 ~vaGKTGTAq 525 (598)
.||+||||+.
T Consensus 243 ~Va~KTGt~~ 252 (266)
T 1alq_A 243 KVADKSGQAI 252 (266)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEECCCC
T ss_conf 8999650577