HHsearch results for GI: 254781103 and protein with PDBid: 1k38_A
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A*
Probab=100.00 E-value=0 Score=345.55 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=180.3
Q ss_pred HHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCC
Q ss_conf 21001132343111223023203211121001473111344432322222332456643201235654430240320442
Q gi|254781103|r 273 VENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDL 352 (598)
Q Consensus 273 ~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~ 352 (598)
.+..+.++++ |++|+||++||++++|+ ||| ||+.+ .|+||||||||++++|||+|++++++.
T Consensus 11 ~~~f~~~~~~-G~~vv~D~~tg~~~a~~----~n~------------~~a~~-~y~PGSTfK~~~~~aaLe~G~i~~~~~ 72 (254)
T 1k38_A 11 RKFFSEFQAK-GTIVVADERQADRAMLV----FDP------------VRSKK-RYSPASTFKIPHTLFALDAGAVRDEFQ 72 (254)
T ss_dssp HHHHHHTTCC-EEEEEEECSSSSCCCEE----ESH------------HHHTC-CBCCGGGGHHHHHHHHHHHTSCCSTTC
T ss_pred HHHHHHCCCC-EEEEEEECCCCCEEEEE----CCH------------HHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9887651883-89999989998578861----498------------99668-889972899999999998498543211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13367632221011234543230039998550367123543202333320011012225763446865421111223355
Q gi|254781103|r 353 FDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWK 432 (598)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~ 432 (598)
+.|.+... +..++ ++|.+|+++||++|||++|+++++++|.+++.+++++||||... ++++
T Consensus 73 ~~~~~~~~---~~~~~---~~g~~tl~~Al~~S~N~~f~~la~~lG~~~~~~~~~~~G~G~~~---~~~~---------- 133 (254)
T 1k38_A 73 IFRWDGVN---RGFAG---HNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNAD---PSTS---------- 133 (254)
T ss_dssp CBCCCSCC---CSCTT---TSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCC---CCC-----------
T ss_pred CCCCCCCC---CCCCC---CCCCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCC----------
T ss_conf 34689876---78888---89997999999973939999999981908899999985999998---8765----------
Q ss_pred CCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 441001146875-2130010022110011078230108999863078850320189999999999999873388464104
Q gi|254781103|r 433 RIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAF 511 (598)
Q Consensus 433 ~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~ 511 (598)
...+++|| +.+||+|||++|++|||+|.. +++++.+.++++|+.+ .
T Consensus 134 ----~~~~~~~g~~~itPlq~a~~~~~ian~g~~--------------------~~~~~~~~~~~~~~~~---------~ 180 (254)
T 1k38_A 134 ----NGDYWIEGSLAISAQEQIAFLRKLYRNELP--------------------FRVEHQRLVKDLMIVE---------A 180 (254)
T ss_dssp -----CCTTTTSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTEEE---------E
T ss_pred ----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEE--------------------CCHHHHHHHHHHHHHH---------H
T ss_conf ----344001787437599999999999769940--------------------5800679999999883---------4
Q ss_pred CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79735766724035126887668862179999974288809999998078888888743214678999999999999818
Q gi|254781103|r 512 VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLG 591 (598)
Q Consensus 512 ~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~ 591 (598)
.+|+++||||||||. ++||+||+|.+||+|+++|++++|+ +..|+..|+||+++|++ .++
T Consensus 181 ~~g~~vaGKTGTa~~-----------~~WFvG~~p~~~p~~~~av~i~~~~-----~~~~~~~a~~i~~~il~----~l~ 240 (254)
T 1k38_A 181 GRNWILRAKTGWEGR-----------MGWWVGWVEWPTGSVFFALNIDTPN-----RMDDLFKREAIVRAILR----SIE 240 (254)
T ss_dssp ETTEEEEEEEEESSS-----------EEEEEEEEEETTEEEEEEEEEECTT-----GGGGTHHHHHHHHHHHH----HTT
T ss_pred HCCCEEEEEECCCCC-----------CEEEEEEEECCCCEEEEEEEEECCC-----CCCCHHHHHHHHHHHHH----HCC
T ss_conf 259757776368986-----------7689999986998699999997799-----97728999999999999----848
Q ss_pred CCC
Q ss_conf 998
Q gi|254781103|r 592 VKP 594 (598)
Q Consensus 592 i~P 594 (598)
+.|
T Consensus 241 ~lp 243 (254)
T 1k38_A 241 ALP 243 (254)
T ss_dssp SSC
T ss_pred CCC
T ss_conf 999