HHsearch results for GI: 254781103 and protein with PDBid: 1nrf_A

>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=100.00  E-value=0  Score=360.07  Aligned_cols=245  Identities=19%  Similarity=0.264  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             77777644210011323431112230232032111210014731113444323222223324566432012356544302
Q gi|254781103|r  265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS  344 (598)
Q Consensus       265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~  344 (598)
                      |.++++.+.+.+++++++ |++|+||++||++++      ||+            ||+.+ .|+|||||||+++++|||+
T Consensus        17 ~~i~~~~l~~~~~~~~~~-G~~vv~d~~tg~~~~------~n~------------n~~~~-~~~PGSTfK~~~~~aaLe~   76 (262)
T 1nrf_A           17 TNVEYEDYSTFFDKFSAS-GGFVLFNSNRKKYTI------YNR------------KESTS-RFAPASTYKVFSALLALES   76 (262)
T ss_dssp             CEEEECCCHHHHHTTTEE-EEEEEEETTTTEEEE------ECH------------HHHHS-CBCCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-EEEEEEECCCCCEEE------ECH------------HHHCC-CCCCCCHHHHHHHHHHHHC
T ss_conf             036899999999973885-589999899997863------198------------99757-7899752899999999985


Q ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             40320442133676322210112345432300399985503671235432023333200110122257634468654211
Q gi|254781103|r  345 GLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQA  424 (598)
Q Consensus       345 g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~  424 (598)
                      |++++++.+.|.+....      .++..+|.+++++||++|||++|++++++||.+++.+++++|||+++. +..|    
T Consensus        77 g~~~~~~~~~~~~~~~~------~~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~-~~~p----  145 (262)
T 1nrf_A           77 GIITKNDSHMTWDGTQY------PYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNED-FSVP----  145 (262)
T ss_dssp             TSSCSSCCCBCCCCCCC------SSTTTSSCBCHHHHHHHTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCC-CSCT----
T ss_pred             CCCCCCCEEECCCCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCC----
T ss_conf             99999874565998503------678889997999999975709885232425857899999983999988-8986----


Q ss_pred             CCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             11223355441001146875-21300100221100110782301089998630788503201899999999999998733
Q gi|254781103|r  425 PSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT  503 (598)
Q Consensus       425 g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~  503 (598)
                                   ..+++|| +.+||+|||++|++|||+|..++                    +++.+.++++|+    
T Consensus       146 -------------~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~--------------------p~~~~~~~~~~~----  188 (262)
T 1nrf_A          146 -------------ADYWLDGSLQISPLEQVNILKKFYDNEFDFK--------------------QSNIETVKDSIR----  188 (262)
T ss_dssp             -------------TTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC--------------------HHHHHHHHHHHE----
T ss_pred             -------------CHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------------------HHHHHHHHHHHH----
T ss_conf             -------------3787479755239999999999954688778--------------------899999987876----


Q ss_pred             CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88464104797357667240351268876688621799999742888099999980788888887432146789999999
Q gi|254781103|r  504 GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNII  583 (598)
Q Consensus       504 ~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~  583 (598)
                           .+..+++.|||||||||.      ..+.+++||+||+|.+||+|+++|.|++|+      .+|+.+|+||+++|+
T Consensus       189 -----~~~~~~~~vagKTGTa~~------~~~~~~~WfvGy~p~~~p~~~~~v~ie~~~------~~~~~~A~pI~~~il  251 (262)
T 1nrf_A          189 -----LEESNGRVLSGKTGTSVI------NGELHAGWFIGYVETADNTFFFAVHIQGEK------RAAGSSAAEIALSIL  251 (262)
T ss_dssp             -----EEEETTEEEEEEEEEEEC------SSSCEEEEEEEEEECSSCEEEEEEEEEESC------SCHHHHHHHHHHHHH
T ss_pred             -----HHHHHCCCCCCCCCCCCC------CCCCCEEEEEEEEECCCCEEEEEEEEECCC------CCCCHHHHHHHHHHH
T ss_conf             -----654412335664025436------899862899999987998599999998899------875078999999999


Q ss_pred             HHHHHHCCCCCCCCC
Q ss_conf             999998189985569
Q gi|254781103|r  584 RRSASMLGVKPVFLK  598 (598)
Q Consensus       584 ~~~~~~~~i~P~~~~  598 (598)
                          ..||+.|...|
T Consensus       252 ----~~lg~~P~~~~  262 (262)
T 1nrf_A          252 ----DKKGIYPSVSR  262 (262)
T ss_dssp             ----HHTTSCC----
T ss_pred             ----HHCCCCCCCCC
T ss_conf             ----98599999999