HHsearch results for GI: 254781103 and protein with PDBid: 1nrf_A
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=100.00 E-value=0 Score=360.07 Aligned_cols=245 Identities=19% Similarity=0.264 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 77777644210011323431112230232032111210014731113444323222223324566432012356544302
Q gi|254781103|r 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 (598)
Q Consensus 265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~ 344 (598)
|.++++.+.+.+++++++ |++|+||++||++++ ||+ ||+.+ .|+|||||||+++++|||+
T Consensus 17 ~~i~~~~l~~~~~~~~~~-G~~vv~d~~tg~~~~------~n~------------n~~~~-~~~PGSTfK~~~~~aaLe~ 76 (262)
T 1nrf_A 17 TNVEYEDYSTFFDKFSAS-GGFVLFNSNRKKYTI------YNR------------KESTS-RFAPASTYKVFSALLALES 76 (262)
T ss_dssp CEEEECCCHHHHHTTTEE-EEEEEEETTTTEEEE------ECH------------HHHHS-CBCCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEEECCCCCEEE------ECH------------HHHCC-CCCCCCHHHHHHHHHHHHC
T ss_conf 036899999999973885-589999899997863------198------------99757-7899752899999999985
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 40320442133676322210112345432300399985503671235432023333200110122257634468654211
Q gi|254781103|r 345 GLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQA 424 (598)
Q Consensus 345 g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~ 424 (598)
|++++++.+.|.+.... .++..+|.+++++||++|||++|++++++||.+++.+++++|||+++. +..|
T Consensus 77 g~~~~~~~~~~~~~~~~------~~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~-~~~p---- 145 (262)
T 1nrf_A 77 GIITKNDSHMTWDGTQY------PYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNED-FSVP---- 145 (262)
T ss_dssp TSSCSSCCCBCCCCCCC------SSTTTSSCBCHHHHHHHTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCC-CSCT----
T ss_pred CCCCCCCEEECCCCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCC----
T ss_conf 99999874565998503------678889997999999975709885232425857899999983999988-8986----
Q ss_pred CCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 11223355441001146875-21300100221100110782301089998630788503201899999999999998733
Q gi|254781103|r 425 PSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT 503 (598)
Q Consensus 425 g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~ 503 (598)
..+++|| +.+||+|||++|++|||+|..++ +++.+.++++|+
T Consensus 146 -------------~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~--------------------p~~~~~~~~~~~---- 188 (262)
T 1nrf_A 146 -------------ADYWLDGSLQISPLEQVNILKKFYDNEFDFK--------------------QSNIETVKDSIR---- 188 (262)
T ss_dssp -------------TTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC--------------------HHHHHHHHHHHE----
T ss_pred -------------CHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------------------HHHHHHHHHHHH----
T ss_conf -------------3787479755239999999999954688778--------------------899999987876----
Q ss_pred CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88464104797357667240351268876688621799999742888099999980788888887432146789999999
Q gi|254781103|r 504 GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNII 583 (598)
Q Consensus 504 ~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~ 583 (598)
.+..+++.|||||||||. ..+.+++||+||+|.+||+|+++|.|++|+ .+|+.+|+||+++|+
T Consensus 189 -----~~~~~~~~vagKTGTa~~------~~~~~~~WfvGy~p~~~p~~~~~v~ie~~~------~~~~~~A~pI~~~il 251 (262)
T 1nrf_A 189 -----LEESNGRVLSGKTGTSVI------NGELHAGWFIGYVETADNTFFFAVHIQGEK------RAAGSSAAEIALSIL 251 (262)
T ss_dssp -----EEEETTEEEEEEEEEEEC------SSSCEEEEEEEEEECSSCEEEEEEEEEESC------SCHHHHHHHHHHHHH
T ss_pred -----HHHHHCCCCCCCCCCCCC------CCCCCEEEEEEEEECCCCEEEEEEEEECCC------CCCCHHHHHHHHHHH
T ss_conf -----654412335664025436------899862899999987998599999998899------875078999999999
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 999998189985569
Q gi|254781103|r 584 RRSASMLGVKPVFLK 598 (598)
Q Consensus 584 ~~~~~~~~i~P~~~~ 598 (598)
..||+.|...|
T Consensus 252 ----~~lg~~P~~~~ 262 (262)
T 1nrf_A 252 ----DKKGIYPSVSR 262 (262)
T ss_dssp ----HHTTSCC----
T ss_pred ----HHCCCCCCCCC
T ss_conf ----98599999999