HHsearch results for GI: 254781103 and protein with PDBid: 1tvf_A
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=97.40 E-value=1.7e-05 Score=52.36 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=71.5
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCC-C
Q ss_conf 111223023203211121001473111344432322222332456643201235654430---240320442133676-3
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNP-I 359 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~-~ 359 (598)
..+++||..||+||.-- | ....++|+|+-|++|++.+|| +|.+++++.+..+.. +
T Consensus 35 ~~~~vv~~~TG~iLy~K-------------------N--~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~ 93 (369)
T 1tvf_A 35 PTSAVNVSQTGQLLYQY-------------------N--IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEY 93 (369)
T ss_dssp CSEEEEEETTSBEEEEE-------------------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHH
T ss_pred CCEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHH
T ss_conf 63699997899294267-------------------8--09982878999999999999988638988344713579999
Q ss_pred CCCCC-CCCCC-CCCCCCCCHHH----HHHCCCCCEEEEEEECCC------CCCCHHHCCCCCCCC
Q ss_conf 22210-11234-54323003999----855036712354320233------332001101222576
Q gi|254781103|r 360 KVGKH-VIHDY-HPQNRILTIPE----IFRYSSNIGAAQIADAMG------IQGHKEFLYRLGLLS 413 (598)
Q Consensus 360 ~~~~~-~i~~~-~~~~g~it~~~----al~~S~Nv~~~~i~~~lg------~~~~~~~~~~fG~g~ 413 (598)
..... ..... -..+..+++++ .|..|.|-...-||+.++ .+.+.+.++++|+..
T Consensus 94 ~~~~~~~~S~~~l~~G~~~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~ 159 (369)
T 1tvf_A 94 IMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKN 159 (369)
T ss_dssp HHTTCTTSCCCCCCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHCCCCCCCCEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 734587776124438979759999998764477789999998704777999999999999848898