HHsearch results for GI: 254781103 and protein with PDBid: 1u60_A

>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=94.78  E-value=0.054  Score=30.14  Aligned_cols=214  Identities=19%  Similarity=0.190  Sum_probs=111.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCC---CCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCC
Q ss_conf             324566432012356544302-40320442133-6763222101---123454323003999855036712354320233
Q gi|254781103|r  324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHV---IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMG  398 (598)
Q Consensus       324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~---i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg  398 (598)
                      ...|..-|+-|||+++.||+. |.-...+.+-. |....++.-.   ....++++ ++--.-||..++=+.--...++  
T Consensus        59 ~~~FsiqSisK~f~~~lal~~~G~~~V~~~VG~EPSg~~FNsl~~le~~~g~P~N-PmINAGAI~~~sli~~~~~~~r--  135 (310)
T 1u60_A           59 DYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLS-PLVNAGAIATTSLINAENVEQR--  135 (310)
T ss_dssp             TCCEECGGGHHHHHHHHHHHHHCHHHHHHHTCSCCCSSCTTCHHHHHHTTTCCCC-TTSHHHHHHHHHHSCCSSHHHH--
T ss_pred             CCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCHHHH--
T ss_conf             9877089999999999999765989999985768777887336655315899789-5301008898886416881799--


Q ss_pred             CCCCHHHCCCCCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHH
Q ss_conf             3320011012225763446865---4211---------------1122335544100114687-5213001002211001
Q gi|254781103|r  399 IQGHKEFLYRLGLLSKLETELP---EIQA---------------PSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAAL  459 (598)
Q Consensus       399 ~~~~~~~~~~fG~g~~t~idlp---~e~~---------------g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~ati  459 (598)
                      .+.+.++++++. |.+..+|-.   .|..               |.++.+  .-+....=|=| ++.+|.-+||.+.+++
T Consensus       136 ~~~i~~~~~~~~-g~~l~~d~~v~~SE~~t~~rN~Alay~lk~~g~~~~d--~~~~Ld~Yf~~CSi~vt~~dLA~~aatL  212 (310)
T 1u60_A          136 WQRILHIQQQLA-GEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCD--AMEACDVYTRQCSTLLNTIELATLGATL  212 (310)
T ss_dssp             HHHHHHHHHHHH-CTTCEECHHHHHHHHTTCHHHHHHHHHHHHHTCCCSC--HHHHHHHHHHHTTEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999965-9987668899999871539999999999977998889--9999999999852460099999999999


Q ss_pred             HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf             1078230108999863078850320189999999999999873-388464104797357667240351268876688621
Q gi|254781103|r  460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF  538 (598)
Q Consensus       460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~  538 (598)
                      ||+|+-             +...++++++++++.+...|...- -+.+|.-++--|.+  +|+|-+              
T Consensus       213 AN~Gv~-------------P~t~~~v~~~~~~r~v~s~M~tcGmYd~SG~fa~~VGlP--aKSGVg--------------  263 (310)
T 1u60_A          213 AAGGVN-------------PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP--GKSGVG--------------  263 (310)
T ss_dssp             HTTSEE-------------TTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHTCSC--EEECTT--------------
T ss_pred             HCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC--CCCCCC--------------
T ss_conf             769938-------------998881078899999999986458742467899990976--114788--------------


Q ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7999997428880999999807888888874321467899999
Q gi|254781103|r  539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGN  581 (598)
Q Consensus       539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~  581 (598)
                      .-.++..|-   ++.++||=  |.-.    ..|.++++--+-+
T Consensus       264 GgI~avvPg---~~gIav~S--P~LD----~~GNSv~G~~~le  297 (310)
T 1u60_A          264 GGILAVVPG---VMGIAAFS--PPLD----EDGNSVRGQKMVA  297 (310)
T ss_dssp             SEEEEEETT---TEEEEEEC--SCBC----TTSCBHHHHHHHH
T ss_pred             CEEEEEECC---CEEEEEEC--CCCC----CCCCCHHHHHHHH
T ss_conf             438999489---60899989--8879----8888799999999