HHsearch results for GI: 254781103 and protein with PDBid: 1u60_A
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=94.78 E-value=0.054 Score=30.14 Aligned_cols=214 Identities=19% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCC---CCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCC
Q ss_conf 324566432012356544302-40320442133-6763222101---123454323003999855036712354320233
Q gi|254781103|r 324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHV---IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMG 398 (598)
Q Consensus 324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~---i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg 398 (598)
...|..-|+-|||+++.||+. |.-...+.+-. |....++.-. ....++++ ++--.-||..++=+.--...++
T Consensus 59 ~~~FsiqSisK~f~~~lal~~~G~~~V~~~VG~EPSg~~FNsl~~le~~~g~P~N-PmINAGAI~~~sli~~~~~~~r-- 135 (310)
T 1u60_A 59 DYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLS-PLVNAGAIATTSLINAENVEQR-- 135 (310)
T ss_dssp TCCEECGGGHHHHHHHHHHHHHCHHHHHHHTCSCCCSSCTTCHHHHHHTTTCCCC-TTSHHHHHHHHHHSCCSSHHHH--
T ss_pred CCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCHHHH--
T ss_conf 9877089999999999999765989999985768777887336655315899789-5301008898886416881799--
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHH
Q ss_conf 3320011012225763446865---4211---------------1122335544100114687-5213001002211001
Q gi|254781103|r 399 IQGHKEFLYRLGLLSKLETELP---EIQA---------------PSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAAL 459 (598)
Q Consensus 399 ~~~~~~~~~~fG~g~~t~idlp---~e~~---------------g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~ati 459 (598)
.+.+.++++++. |.+..+|-. .|.. |.++.+ .-+....=|=| ++.+|.-+||.+.+++
T Consensus 136 ~~~i~~~~~~~~-g~~l~~d~~v~~SE~~t~~rN~Alay~lk~~g~~~~d--~~~~Ld~Yf~~CSi~vt~~dLA~~aatL 212 (310)
T 1u60_A 136 WQRILHIQQQLA-GEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCD--AMEACDVYTRQCSTLLNTIELATLGATL 212 (310)
T ss_dssp HHHHHHHHHHHH-CTTCEECHHHHHHHHTTCHHHHHHHHHHHHHTCCCSC--HHHHHHHHHHHTTEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999965-9987668899999871539999999999977998889--9999999999852460099999999999
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf 1078230108999863078850320189999999999999873-388464104797357667240351268876688621
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF 538 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~ 538 (598)
||+|+- +...++++++++++.+...|...- -+.+|.-++--|.+ +|+|-+
T Consensus 213 AN~Gv~-------------P~t~~~v~~~~~~r~v~s~M~tcGmYd~SG~fa~~VGlP--aKSGVg-------------- 263 (310)
T 1u60_A 213 AAGGVN-------------PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP--GKSGVG-------------- 263 (310)
T ss_dssp HTTSEE-------------TTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHTCSC--EEECTT--------------
T ss_pred HCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC--CCCCCC--------------
T ss_conf 769938-------------998881078899999999986458742467899990976--114788--------------
Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7999997428880999999807888888874321467899999
Q gi|254781103|r 539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGN 581 (598)
Q Consensus 539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~ 581 (598)
.-.++..|- ++.++||= |.-. ..|.++++--+-+
T Consensus 264 GgI~avvPg---~~gIav~S--P~LD----~~GNSv~G~~~le 297 (310)
T 1u60_A 264 GGILAVVPG---VMGIAAFS--PPLD----EDGNSVRGQKMVA 297 (310)
T ss_dssp SEEEEEETT---TEEEEEEC--SCBC----TTSCBHHHHHHHH
T ss_pred CEEEEEECC---CEEEEEEC--CCCC----CCCCCHHHHHHHH
T ss_conf 438999489---60899989--8879----8888799999999