HHsearch results for GI: 254781103 and protein with PDBid: 1vqq_A

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=100.00  E-value=0  Score=733.51  Aligned_cols=473  Identities=18%  Similarity=0.242  Sum_probs=394.6

Q ss_pred             HHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCEEEE
Q ss_conf             3210004665179974576487081686977999997338099899999998880799989999985136----762896
Q gi|254781103|r  103 IAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSE----TKFQWL  178 (598)
Q Consensus       103 ~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~----~~~~~i  178 (598)
                      ..++++...++|+||.||||||++||+|.+.|+|+++|..+.+.+  ...|+..| .++.+.+.+++.+.    ..|+++
T Consensus       116 ~~~~~~~~~~~a~RG~I~DrnG~~LA~~~~~~~v~i~P~~i~~~~--~~~la~~L-~~~~~~i~~~l~~~~~~~~~~v~~  192 (646)
T 1vqq_A          116 KDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKD--YKAIAKEL-SISEDYIKQQMDQNWVQDDTFVPL  192 (646)
T ss_dssp             SSEEEEEEEECCCCCCEECTTCCEEEEEEEEEEEEECGGGCCTTT--HHHHHHHH-TCCHHHHHHHHTSTTCCTTCCEEE
T ss_pred             CCCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCHHH--HHHHHHHH-CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             888089887328998889789999452556769999948669244--99999773-899999999999864045670475


Q ss_pred             EC--CCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCC-----------------CCCCCCCCEEECCCCC
Q ss_conf             13--7999999997631013750120233332100000011111124-----------------6875123100014668
Q gi|254781103|r  179 RR--KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDI-----------------DNRGITGIEKFLDMQG  239 (598)
Q Consensus       179 ~r--~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~-----------------d~~G~~GlE~~~d~~g  239 (598)
                      ..  .+++......   +.+|+.+.+...|+||++++++|+|||++.                 |..|++|||+.||+.+
T Consensus       193 ~~~~~~~~~~~~~~---~~~gl~~~~~~~R~YP~~~~aahliGyv~~~~~e~l~~~~~~~y~~~~~vG~sGlE~~yd~~L  269 (646)
T 1vqq_A          193 KTVKKMDEYLSDFA---KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKL  269 (646)
T ss_dssp             EEESCCSHHHHHHH---HHTTCEEEEEEEEECTTGGGGHHHHCCEEECCTTGGGSGGGTTCCTTCEEECSHHHHHTHHHH
T ss_pred             EHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             31244899999874---048825766466777761037662765687898999753430466300046401223433311


Q ss_pred             CC-----EEEE-----------CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf             51-----6895-----------3666768867425552576777776442100113234311122302320321112100
Q gi|254781103|r  240 LT-----RVFT-----------TNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIP  303 (598)
Q Consensus       240 ~~-----~~~~-----------~~~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P  303 (598)
                      .+     ....           ....+++|.||+||||.++|+++++++..       ..+++|+|||+||+||||+|.|
T Consensus       270 ~G~~G~~~~~~~~~g~~~~~~~~~~~~~~G~dI~lTID~~lQ~~a~~~l~~-------~~~~~va~~~~tGeilA~as~p  342 (646)
T 1vqq_A          270 QHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNMKN-------DYGSGTAIHPQTGELLALVSTP  342 (646)
T ss_dssp             CCBCEEEEEEEEC-CCCEEEEEEEECCBCCCCEEBSCCHHHHHHHHHHHTT-------SSEEEEEEETTTTEEEEEEEES
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHC-------CCCCEEEEECCCCCEEEEEECC
T ss_conf             588872799971677632220013577899745885247788889986422-------3352899824667067775057


Q ss_pred             CCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC-----CCCCC
Q ss_conf             14731113444-----------323222223324566432012356544302403204421336763222-----10112
Q gi|254781103|r  304 DYDPHEAFKGK-----------KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG-----KHVIH  367 (598)
Q Consensus       304 ~~dpn~~~~~~-----------~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~-----~~~i~  367 (598)
                      +||||.+....           .....++++++.|||||||||+|+++||++|.++|++.++|++.....     ++.++
T Consensus       343 ~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe~g~i~~~~~~~~~g~~~~~~~~~g~~~~~  422 (646)
T 1vqq_A          343 SYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVT  422 (646)
T ss_dssp             CCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHHTTSSCTTCEEEECSSEECSSGGGTTCCEE
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCCC
T ss_conf             65544211465312212233562145555545111345420178899999769979998799478414346776764334


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCC-C
Q ss_conf             3454323003999855036712354320233332001101222576344686542111122-3355441001146875-2
Q gi|254781103|r  368 DYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP-SQWKRIHSLTISFGHG-L  445 (598)
Q Consensus       368 ~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p-~~~~~~~~~~~~~Gqg-~  445 (598)
                      +++..+|.+++++||++|||++|++++.++|.+.+.+++++||||+++++++|.+..+..+ ..|....+++++|||| +
T Consensus       423 ~~~~~~G~v~l~~al~~S~N~~f~~la~~lg~~~l~~~a~~fG~g~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v  502 (646)
T 1vqq_A          423 RYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEI  502 (646)
T ss_dssp             CSSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             66788872321203057878999999987638899988876368988886665543446776678752242204677751


Q ss_pred             EEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEE
Q ss_conf             13001002211001107823010899986307885032018999999999999987338846410479735766724035
Q gi|254781103|r  446 STTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQ  525 (598)
Q Consensus       446 ~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq  525 (598)
                      .+||||||++||+|||+|.+++||||+++.+  ....++++|+++++.+++||+.||++|||+.+..++++|||||||||
T Consensus       503 ~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~--~~~~~~vis~~~a~~l~~~m~~VV~~Gt~~~~~~~~~~vaGKTGTAe  580 (646)
T 1vqq_A          503 LINPVQILSIYSALENNGNINAPHLLKDTKN--KVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAE  580 (646)
T ss_dssp             BBCHHHHHHHHHGGGTTTCEECCBCBTTSCC--CEEECCCSCHHHHHHHHHHHHHHHHTTTTTTTCCTTSCEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCE
T ss_conf             2379999999999974981861189955788--76777789999999999999999754340221158988999826570


Q ss_pred             ECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             12688766886217999997428880999999807888888874321467899999999999981899
Q gi|254781103|r  526 KVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVK  593 (598)
Q Consensus       526 ~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~  593 (598)
                      ....+++ .+.+|+||+|| |.+||+|+++|+|++|+... .+.+|+.+|+|||++|++..+.+|.|.
T Consensus       581 ~~~~~g~-~~~~~awFvgf-~~d~P~~av~V~ve~~~~~g-~~~~g~~vA~pv~~~i~e~~~~~~~id  645 (646)
T 1vqq_A          581 LKMKQGE-TGRQIGWFISY-DKDNPNMMMAINVKDVQDKG-MASYNAKISGKVYDELYENGNKKYDID  645 (646)
T ss_dssp             CC-------CCEEEEEEEE-ETTSCSCEEEEEEECCTTTT-THHHHHHHHHHHHHHHTGGGTSCCCTT
T ss_pred             ECCCCCC-CCCEEEEEEEE-CCCCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7677899-89806999998-58999699999997278888-662328999999999998688757999