HHsearch results for GI: 254781103 and protein with PDBid: 1vqq_A
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=100.00 E-value=0 Score=733.51 Aligned_cols=473 Identities=18% Similarity=0.242 Sum_probs=394.6
Q ss_pred HHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCEEEE
Q ss_conf 3210004665179974576487081686977999997338099899999998880799989999985136----762896
Q gi|254781103|r 103 IAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSE----TKFQWL 178 (598)
Q Consensus 103 ~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~----~~~~~i 178 (598)
..++++...++|+||.||||||++||+|.+.|+|+++|..+.+.+ ...|+..| .++.+.+.+++.+. ..|+++
T Consensus 116 ~~~~~~~~~~~a~RG~I~DrnG~~LA~~~~~~~v~i~P~~i~~~~--~~~la~~L-~~~~~~i~~~l~~~~~~~~~~v~~ 192 (646)
T 1vqq_A 116 KDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKD--YKAIAKEL-SISEDYIKQQMDQNWVQDDTFVPL 192 (646)
T ss_dssp SSEEEEEEEECCCCCCEECTTCCEEEEEEEEEEEEECGGGCCTTT--HHHHHHHH-TCCHHHHHHHHTSTTCCTTCCEEE
T ss_pred CCCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCHHH--HHHHHHHH-CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 888089887328998889789999452556769999948669244--99999773-899999999999864045670475
Q ss_pred EC--CCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCC-----------------CCCCCCCCEEECCCCC
Q ss_conf 13--7999999997631013750120233332100000011111124-----------------6875123100014668
Q gi|254781103|r 179 RR--KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDI-----------------DNRGITGIEKFLDMQG 239 (598)
Q Consensus 179 ~r--~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~-----------------d~~G~~GlE~~~d~~g 239 (598)
.. .+++...... +.+|+.+.+...|+||++++++|+|||++. |..|++|||+.||+.+
T Consensus 193 ~~~~~~~~~~~~~~---~~~gl~~~~~~~R~YP~~~~aahliGyv~~~~~e~l~~~~~~~y~~~~~vG~sGlE~~yd~~L 269 (646)
T 1vqq_A 193 KTVKKMDEYLSDFA---KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKL 269 (646)
T ss_dssp EEESCCSHHHHHHH---HHTTCEEEEEEEEECTTGGGGHHHHCCEEECCTTGGGSGGGTTCCTTCEEECSHHHHHTHHHH
T ss_pred EHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 31244899999874---048825766466777761037662765687898999753430466300046401223433311
Q ss_pred CC-----EEEE-----------CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 51-----6895-----------3666768867425552576777776442100113234311122302320321112100
Q gi|254781103|r 240 LT-----RVFT-----------TNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIP 303 (598)
Q Consensus 240 ~~-----~~~~-----------~~~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P 303 (598)
.+ .... ....+++|.||+||||.++|+++++++.. ..+++|+|||+||+||||+|.|
T Consensus 270 ~G~~G~~~~~~~~~g~~~~~~~~~~~~~~G~dI~lTID~~lQ~~a~~~l~~-------~~~~~va~~~~tGeilA~as~p 342 (646)
T 1vqq_A 270 QHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNMKN-------DYGSGTAIHPQTGELLALVSTP 342 (646)
T ss_dssp CCBCEEEEEEEEC-CCCEEEEEEEECCBCCCCEEBSCCHHHHHHHHHHHTT-------SSEEEEEEETTTTEEEEEEEES
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHC-------CCCCEEEEECCCCCEEEEEECC
T ss_conf 588872799971677632220013577899745885247788889986422-------3352899824667067775057
Q ss_pred CCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC-----CCCCC
Q ss_conf 14731113444-----------323222223324566432012356544302403204421336763222-----10112
Q gi|254781103|r 304 DYDPHEAFKGK-----------KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG-----KHVIH 367 (598)
Q Consensus 304 ~~dpn~~~~~~-----------~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~-----~~~i~ 367 (598)
+||||.+.... .....++++++.|||||||||+|+++||++|.++|++.++|++..... ++.++
T Consensus 343 ~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe~g~i~~~~~~~~~g~~~~~~~~~g~~~~~ 422 (646)
T 1vqq_A 343 SYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVT 422 (646)
T ss_dssp CCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHHTTSSCTTCEEEECSSEECSSGGGTTCCEE
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCCC
T ss_conf 65544211465312212233562145555545111345420178899999769979998799478414346776764334
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCC-C
Q ss_conf 3454323003999855036712354320233332001101222576344686542111122-3355441001146875-2
Q gi|254781103|r 368 DYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP-SQWKRIHSLTISFGHG-L 445 (598)
Q Consensus 368 ~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p-~~~~~~~~~~~~~Gqg-~ 445 (598)
+++..+|.+++++||++|||++|++++.++|.+.+.+++++||||+++++++|.+..+..+ ..|....+++++|||| +
T Consensus 423 ~~~~~~G~v~l~~al~~S~N~~f~~la~~lg~~~l~~~a~~fG~g~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v 502 (646)
T 1vqq_A 423 RYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEI 502 (646)
T ss_dssp CSSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 66788872321203057878999999987638899988876368988886665543446776678752242204677751
Q ss_pred EEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEE
Q ss_conf 13001002211001107823010899986307885032018999999999999987338846410479735766724035
Q gi|254781103|r 446 STTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQ 525 (598)
Q Consensus 446 ~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq 525 (598)
.+||||||++||+|||+|.+++||||+++.+ ....++++|+++++.+++||+.||++|||+.+..++++|||||||||
T Consensus 503 ~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~--~~~~~~vis~~~a~~l~~~m~~VV~~Gt~~~~~~~~~~vaGKTGTAe 580 (646)
T 1vqq_A 503 LINPVQILSIYSALENNGNINAPHLLKDTKN--KVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAE 580 (646)
T ss_dssp BBCHHHHHHHHHGGGTTTCEECCBCBTTSCC--CEEECCCSCHHHHHHHHHHHHHHHHTTTTTTTCCTTSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCE
T ss_conf 2379999999999974981861189955788--76777789999999999999999754340221158988999826570
Q ss_pred ECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12688766886217999997428880999999807888888874321467899999999999981899
Q gi|254781103|r 526 KVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVK 593 (598)
Q Consensus 526 ~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~ 593 (598)
....+++ .+.+|+||+|| |.+||+|+++|+|++|+... .+.+|+.+|+|||++|++..+.+|.|.
T Consensus 581 ~~~~~g~-~~~~~awFvgf-~~d~P~~av~V~ve~~~~~g-~~~~g~~vA~pv~~~i~e~~~~~~~id 645 (646)
T 1vqq_A 581 LKMKQGE-TGRQIGWFISY-DKDNPNMMMAINVKDVQDKG-MASYNAKISGKVYDELYENGNKKYDID 645 (646)
T ss_dssp CC-------CCEEEEEEEE-ETTSCSCEEEEEEECCTTTT-THHHHHHHHHHHHHHHTGGGTSCCCTT
T ss_pred ECCCCCC-CCCEEEEEEEE-CCCCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7677899-89806999998-58999699999997278888-662328999999999998688757999