HHsearch results for GI: 254781103 and protein with PDBid: 3equ_A
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=100.00 E-value=0 Score=840.92 Aligned_cols=500 Identities=29% Similarity=0.488 Sum_probs=449.8
Q ss_pred HHHHHEEEEEECCH-----HHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHH--HHHHHHHHCCC
Q ss_conf 98643134344153-----232100046651799745764870816869779999973380998999--99998880799
Q gi|254781103|r 88 LAIRIIQYGNIHPE-----PIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEI--IEKLQIVLPNL 160 (598)
Q Consensus 88 l~~rl~~lq~~~~~-----~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~--~~~L~~il~~~ 160 (598)
++.||++||+++++ +..++++...++|+||.||||||++||.|.+.|+|+++|..+.+.++. +++|+.++ ++
T Consensus 3 ~~~Rl~~lQv~~~~~~~~~~~~~~~~~~~i~a~RG~I~DrnG~~LA~n~~~~~l~~~p~~~~~~~~~~~~~~L~~~l-~i 81 (542)
T 3equ_A 3 GGARGLYLQTVTYNFLKEQGDNRIVRTQALPATRGTVSDRNGAVLALSAPTESLFAVPKDMKEMPSAAQLERLSELV-DV 81 (542)
T ss_dssp ---------------------CCEEEEEEECCCCCCEECTTCCEEEEEEECC----------------------------
T ss_pred CEEEEEEEEEECHHHHHHHHHHCEEEEEEEECCCCCEEECCCCEEEECCEEEEEEEEHHHCCCCHHHHHHHHHHHHH-CC
T ss_conf 33378788773139999999717168889717998389189999650436759999989854710399999998754-98
Q ss_pred CHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 989999985136-7628961379999999976310137501202333321000000111111246875123100014668
Q gi|254781103|r 161 DSEMIRRKLSSE-TKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQG 239 (598)
Q Consensus 161 ~~~~i~~~l~~~-~~~~~i~r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~g 239 (598)
+.+++.++++++ ++|++|++++++++.+++.++++||+.++.++.|+||++++++|++||++.++.|++|+|++||..+
T Consensus 82 ~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~gi~~~~~~~R~Yp~~~~~~~vlG~v~~~~~G~~GiE~~~d~~L 161 (542)
T 3equ_A 82 PVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSL 161 (542)
T ss_dssp --------------------------------------------EEEECTTGGGGHHHHCEECTTSCEEEHHHHHTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999973578738970569999999998669997787543455447420100003334656688625343454340
Q ss_pred -----CCEEEECC-------------CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf -----51689536-------------667688674255525767777764421001132343111223023203211121
Q gi|254781103|r 240 -----LTRVFTTN-------------KGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVS 301 (598)
Q Consensus 240 -----~~~~~~~~-------------~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas 301 (598)
....+... ..+++|.||+||||.++|+.++++|.+.++..++++|++|+|||+||+||||+|
T Consensus 162 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~lTiD~~lQ~~~~~~l~~~~~~~~~~~g~~vv~d~~tG~IlAm~s 241 (542)
T 3equ_A 162 YGEDGAEVVLRDRQGNIVDSLDSPRNKAPQNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEILALAN 241 (542)
T ss_dssp HCBCEEEEEEECTTCCEEEECCCTTCBCCBCCCCEEBSCCHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTTCBEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECC
T ss_conf 34457257874035851223344456678898633730028787877766788887513556348985067783676426
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 00147311134443232222233245664320123565443024032044213367632221011234543230039998
Q gi|254781103|r 302 IPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEI 381 (598)
Q Consensus 302 ~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~a 381 (598)
+|+||||.+.......+.|||+++.||||||||||++++||++|.+++++.++|++. ..++....+++ .+|.+++++|
T Consensus 242 ~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~~g~~~~~~~~~~~~~-~~~~~~~~~~~-~~G~~~l~~a 319 (542)
T 3equ_A 242 TPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPY-KIGPSPVRDTH-VYPSLDVRGI 319 (542)
T ss_dssp ESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHHHTSSCTTCEEECCCE-EETTEEECCSS-CCSEEEHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEECCCCCC-CCCCCCCCCCC-CCCCCCHHHH
T ss_conf 776662212356631124344407677842666899999985696303301145775-34432112336-7784248998
Q ss_pred HHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCEEEHHHCCCCCCHH
Q ss_conf 55036712354320233332001101222576344686542111122--3355441001146875213001002211001
Q gi|254781103|r 382 FRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHSLTISFGHGLSTTPLQTAVAAAAL 459 (598)
Q Consensus 382 l~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p--~~~~~~~~~~~~~Gqg~~~TPlqla~~~ati 459 (598)
|++|||++|+++++++|.+.+.+++++|||+++|++|||++..+..+ ..|...++++++||||+.+||||||++|++|
T Consensus 320 l~~S~N~~~~~l~~~~g~~~~~~~~~~fG~g~~t~idlp~e~~~~~~~~~~~~~~~~~~~~~Gqg~~~Tplq~a~~~a~i 399 (542)
T 3equ_A 320 MQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTAL 399 (542)
T ss_dssp HHHTCHHHHHHHHTTSCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCGGGCCHHHHHHHHTTCSCBBCHHHHHHHHHHH
T ss_pred HHCCCEEHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEE
T ss_conf 54174515457888729588999999749986568998754345434433467311223204776568889985552325
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf 10782301089998630788503201899999999999998733-88464104797357667240351268876688621
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF 538 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~-~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~ 538 (598)
||+|.+++||+++++.+.. .++++++++++.++++|+.||+ +|||+.+.++||+|||||||||...+|+|.++.++
T Consensus 400 aN~G~~~~p~~v~~i~~~~---~~~~~~~~~a~~i~~~l~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~~~~g~~~~~~~~ 476 (542)
T 3equ_A 400 THDGVLLPLSFEKQAVAPQ---GKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGRYADNKHV 476 (542)
T ss_dssp HTTTEECCCBSBCCSSCCC---CEECSCHHHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC-----------CCE
T ss_pred EECCEEEEEEEEEECCCCC---CCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE
T ss_conf 2087899876544202787---7532447789999989986372798187205799548999200015678855789846
Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999997428880999999807888888874321467899999999999981899855
Q gi|254781103|r 539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596 (598)
Q Consensus 539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P~~ 596 (598)
+||+||+|++||+|+++|||++|+.. +++||.+|||||++||+.++.+++|+|+-
T Consensus 477 awFvGy~P~~~p~~av~V~v~~~~~~---g~~G~~~AaPi~~~i~~~~l~~~~~~p~~ 531 (542)
T 3equ_A 477 ATFIGFAPAKNPRVIVAVTIDEPTAH---GYYGGVVAGPPFKKIMGGSLNILGISPTK 531 (542)
T ss_dssp EEEEEEESSSSCCEEEEEEEESCCSS---CCCHHHHTHHHHHHHHHHHHHHTTCCCSS
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999988799859999999428989---87567899999999999999976989789