Query gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 598
No_of_seqs 193 out of 6051
Neff 6.9
Searched_HMMs 23785
Date Wed Jun 1 00:59:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781103.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oc2_A Penicillin-binding prot 100.0 0 0 856.0 23.4 509 81-596 12-544 (564)
2 3equ_A PBP-2, penicillin-bindi 100.0 0 0 840.9 17.5 500 88-596 3-531 (542)
3 1qme_A Penicillin-binding prot 100.0 0 0 783.8 15.2 496 96-596 8-579 (702)
4 2wad_A Penicillin-binding prot 100.0 0 0 759.3 22.9 516 62-590 1-677 (680)
5 1vqq_A Saupbp2A, penicillin-bi 100.0 0 0 733.5 17.9 473 103-593 116-645 (646)
6 3lo7_A PBPA, penicillin-bindin 100.0 0 0 645.9 16.1 414 100-588 28-480 (483)
7 2v2f_F Penicillin binding prot 100.0 0 0 502.0 17.5 321 250-592 29-368 (390)
8 2bg1_A PBP1B, penicillin-bindi 100.0 0 0 474.7 10.7 355 195-590 16-411 (494)
9 3fwm_A Penicillin-binding prot 100.0 0 0 457.5 12.3 295 251-587 380-698 (751)
10 2olv_A Penicillin-binding prot 100.0 0 0 450.9 11.8 306 251-587 268-598 (669)
11 2jch_A Penicillin-binding prot 100.0 0 0 442.9 15.1 300 251-590 314-637 (720)
12 1xkz_A Regulatory protein BLAR 100.0 0 0 371.7 10.2 244 252-586 5-249 (255)
13 1nrf_A Regulatory protein BLAR 100.0 0 0 360.1 11.0 245 265-598 17-262 (262)
14 2iwb_A Methicillin resistance 100.0 0 0 354.6 11.7 242 261-586 1-243 (246)
15 1k38_A Penicillinase, beta-lac 100.0 0 0 345.6 12.5 232 273-594 11-243 (254)
16 1k55_A Beta lactamase OXA-10; 100.0 0 0 346.2 11.2 229 281-593 16-244 (246)
17 3isg_A Penicillinase, beta-lac 100.0 0 0 328.1 10.9 237 280-592 13-251 (251)
18 3hbr_A OXA-48; class D beta-la 100.0 0 0 321.6 11.2 224 283-594 41-265 (265)
19 3g4p_A Beta-lactamase OXA-24; 100.0 0 0 320.9 11.3 238 265-592 4-243 (244)
20 2wuq_A BLAB, beta-lactamase re 100.0 9.3E-36 3.9E-40 244.7 8.6 291 257-586 1-309 (318)
21 3lez_A Beta-lactamase; antibio 99.7 1.4E-15 6E-20 116.4 11.9 246 270-586 3-258 (260)
22 1m40_A TEM-1, beta-lactamase T 99.6 5.1E-15 2.2E-19 112.9 13.4 230 263-562 3-242 (263)
23 2j9o_A TLL2115 protein; penici 99.6 9.3E-15 3.9E-19 111.2 12.9 243 263-590 19-271 (298)
24 1ghp_A Beta-lactamase, penicil 99.6 7.2E-15 3E-19 111.9 10.3 243 271-588 3-256 (258)
25 2qpn_A Beta-lactamase GES-1; A 99.6 3.8E-14 1.6E-18 107.4 12.1 213 284-561 39-260 (287)
26 2cc1_A Beta-lactamase, penicil 99.5 1.1E-13 4.7E-18 104.4 12.3 248 269-590 4-261 (262)
27 1g6a_A Beta-lactamase PSE-4; c 99.5 2.4E-13 1E-17 102.3 12.3 250 267-591 7-267 (271)
28 2wk0_A Beta-lactamase; hydrola 99.5 3.6E-13 1.5E-17 101.1 13.1 253 265-591 1-261 (265)
29 2p74_A Beta-lactamase CTX-M-9A 99.5 2.3E-12 9.8E-17 96.0 13.8 229 263-563 4-243 (263)
30 1hzo_A Beta-lactamase; mixed a 99.4 1.9E-12 8E-17 96.5 12.5 256 266-596 4-270 (271)
31 1e25_A Extended-spectrum beta- 99.4 1.1E-12 4.5E-17 98.1 9.8 254 268-589 5-271 (282)
32 1n9b_A Penicillinase, beta-lac 99.4 3.4E-12 1.4E-16 94.9 12.2 234 283-590 18-263 (265)
33 1o7e_A L2 beta lactamase; hydr 99.4 1.9E-12 7.9E-17 96.6 10.6 211 284-561 31-253 (276)
34 3m6b_A Beta-lactamase, penicil 99.4 5.8E-12 2.5E-16 93.4 12.7 246 271-590 5-264 (265)
35 3p09_A Beta-lactamase; structu 99.4 5.2E-12 2.2E-16 93.8 12.3 250 269-590 25-285 (290)
36 3dw0_A Class A carbapenemase K 99.4 5.7E-12 2.4E-16 93.5 12.3 242 277-592 38-290 (294)
37 1w7f_A Beta-lactamase; hydrola 99.4 2.7E-11 1.1E-15 89.2 13.8 236 283-592 60-304 (307)
38 1bue_A Protein (imipenem-hydro 99.3 1.8E-11 7.4E-16 90.4 11.5 246 272-590 8-264 (265)
39 3c5a_A Class A carbapenemase K 99.3 2.1E-11 8.8E-16 89.9 11.9 250 269-591 5-264 (264)
40 1bsg_A Beta lactamase, penicil 99.3 1.4E-11 6E-16 91.0 9.9 249 269-591 4-266 (266)
41 1alq_A CP254 beta-lactamase; h 99.3 1.6E-12 6.5E-17 97.1 3.5 185 284-525 60-252 (266)
42 3cjm_A Putative beta-lactamase 99.1 5.7E-10 2.4E-14 80.8 10.3 228 269-589 38-274 (282)
43 1es5_A DD-transpeptidase; peni 98.6 7.7E-10 3.2E-14 80.0 -3.8 140 282-462 7-167 (262)
44 1z6f_A Penicillin-binding prot 98.2 6.6E-07 2.8E-11 61.3 3.8 111 282-413 16-144 (363)
45 3mfd_A D-alanyl-D-alanine carb 98.2 7.2E-07 3E-11 61.1 3.9 107 282-413 8-125 (334)
46 1xp4_A D-alanyl-D-alanine carb 98.2 5.6E-07 2.4E-11 61.8 3.1 112 280-412 11-137 (379)
47 2bcf_A Probable D-alanyl-D-ala 98.2 5.6E-07 2.4E-11 61.8 2.4 107 282-413 18-134 (276)
48 3hun_A Penicillin-binding prot 97.7 3E-06 1.3E-10 57.2 -0.5 110 283-413 70-195 (453)
49 3a3j_A PBP5; penicillin bindin 97.7 1.1E-05 4.4E-10 53.7 2.1 109 282-413 8-133 (344)
50 3ita_A D-alanyl-D-alanine carb 97.7 9.5E-06 4E-10 54.0 1.8 109 282-413 12-140 (352)
51 1tvf_A PBP4, penicillin bindin 97.4 1.7E-05 7.2E-10 52.4 -0.2 109 284-413 35-159 (369)
52 2qmi_A PBP related beta-lactam 97.4 0.0027 1.1E-07 38.4 10.7 75 268-354 6-85 (447)
53 3czd_A Glutaminase kidney isof 97.3 0.00012 4.9E-09 47.0 3.1 225 324-592 61-309 (315)
54 1yqs_A D-alanyl-D-alanine carb 97.2 0.0013 5.6E-08 40.3 7.7 76 261-354 8-88 (349)
55 1ci9_A ESTB, protein (carboxyl 96.9 0.0013 5.5E-08 40.4 5.2 87 258-354 11-101 (392)
56 2qz6_A Beta-lactamase; psychro 96.7 0.0032 1.4E-07 37.9 5.8 185 263-467 3-242 (358)
57 1w5d_A Penicillin-binding prot 96.6 0.0011 4.8E-08 40.8 3.4 52 516-590 407-459 (462)
58 1w79_A D-alanyl-D-alanine carb 96.6 0.0014 5.9E-08 40.2 3.9 57 516-592 406-462 (489)
59 3ozh_A Beta-lactamase/D-alanin 96.5 0.0053 2.2E-07 36.5 6.0 109 265-388 7-118 (351)
60 3hlc_A Transesterase, LOVD; al 96.4 0.0041 1.7E-07 37.2 4.9 84 259-354 35-121 (432)
61 1zkj_A CMY-10, extended-spectr 96.3 0.0068 2.9E-07 35.8 5.8 81 263-354 8-91 (359)
62 2wzx_A Beta-lactamase; inhibit 96.2 0.0086 3.6E-07 35.2 5.7 81 263-354 7-90 (371)
63 3ih8_A Salt-tolerant glutamina 96.0 0.02 8.5E-07 32.8 7.0 216 324-583 57-298 (456)
64 2pby_A Glutaminase; secsg, rik 96.0 0.019 8.1E-07 33.0 6.8 216 324-582 58-298 (308)
65 1mki_A Probable glutaminase YB 96.0 0.032 1.3E-06 31.6 7.7 106 444-584 209-322 (330)
66 3a3d_A PBP4, penicillin-bindin 95.3 0.0068 2.9E-07 35.8 2.3 38 516-564 390-428 (453)
67 2ffy_A Beta-lactamase; AMPC, d 95.2 0.021 9E-07 32.7 4.6 81 263-354 4-87 (358)
68 2ex2_A Penicillin-binding prot 94.9 0.011 4.8E-07 34.4 2.5 37 515-562 393-430 (458)
69 1u60_A Probable glutaminase YB 94.8 0.054 2.3E-06 30.1 5.7 214 324-581 59-297 (310)
70 2drw_A DAA, D-amino acid amida 94.6 0.026 1.1E-06 32.1 3.7 81 263-354 3-86 (363)
71 3i7j_A Beta-lactamase MB2281C; 92.1 0.14 6E-06 27.5 4.1 58 274-353 5-65 (280)
72 2kog_A Vesicle-associated memb 87.2 0.43 1.8E-05 24.4 3.4 67 21-88 43-112 (119)
73 1ei5_A D-aminopeptidase, DAP; 80.1 0.56 2.4E-05 23.6 1.5 74 269-353 10-86 (520)
74 2dcf_A 6-aminohexanoate-dimer 76.0 3.2 0.00014 18.8 8.0 80 285-391 84-167 (392)
75 3hd7_B Syntaxin-1A; membrane p 75.4 1.8 7.5E-05 20.4 3.0 35 40-74 53-87 (109)
76 3hd7_A Vesicle-associated memb 41.5 6.3 0.00027 17.0 0.8 50 24-74 18-67 (91)
77 2w3g_A DOSS, two component sen 39.1 13 0.00053 15.0 2.0 40 259-298 2-41 (153)
78 2kwp_A Transcription elongatio 31.3 20 0.00082 13.8 2.0 37 264-300 23-60 (129)
79 1lm7_A Subdomain of desmoplaki 30.1 6.9 0.00029 16.7 -0.5 62 286-351 91-155 (248)
80 3aa0_A F-actin-capping protein 27.8 17 0.00072 14.2 1.1 53 262-314 118-172 (286)
81 2c7p_A Modification methylase 27.6 20 0.00086 13.7 1.5 25 570-594 302-326 (327)
82 1lm5_A Subdomain of desmoplaki 26.5 3.8 0.00016 18.4 -2.4 18 334-351 97-114 (214)
83 1apy_B Aspartylglucosaminidase 26.0 24 0.001 13.3 2.0 32 264-296 77-108 (141)
84 3cwx_A Protein CAGD, HP0525, C 24.0 14 0.00059 14.8 0.1 67 230-310 79-153 (176)
85 1c8u_A Acyl-COA thioesterase I 21.7 29 0.0012 12.7 1.8 10 333-342 34-43 (285)
86 2j8a_A Histone-lysine N-methyl 21.4 30 0.0012 12.7 1.7 31 269-299 20-50 (136)
87 2kpm_A Uncharacterized protein 21.1 15 0.00064 14.5 -0.2 36 271-311 25-62 (105)
88 1ykd_A Adenylate cyclase; GAF 20.5 28 0.0012 12.8 1.1 38 262-299 25-62 (398)
No 1
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=100.00 E-value=0 Score=855.99 Aligned_cols=509 Identities=29% Similarity=0.466 Sum_probs=456.9
Q ss_pred HHHHHHHHHHHHEEEEEECCHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 99999999864313434415323210004665179974576487081686977999997338099899999998880799
Q gi|254781103|r 81 CLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNL 160 (598)
Q Consensus 81 ~~ii~~il~~rl~~lq~~~~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~ 160 (598)
..|+|.++-+|+++...|+.++.+++++.+.++|+||.||||||++||.|.+.|+|+++|+.+.+.++.+..|+.+| ++
T Consensus 12 ~~~~~~~~~lQv~~~~~y~~~a~~~~~~~~~i~~~RG~I~DrnG~~La~n~~~~~l~~~p~~~~~~~~~~~~la~~l-~~ 90 (564)
T 3oc2_A 12 LEVLFQGPDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAAL-GQ 90 (564)
T ss_dssp -----------------------CCEEEEEEECCCCCCEECTTSCEEEEEEEEEEEEECHHHHTTCGGGHHHHHHHT-TC
T ss_pred HHHHEEHEEEEEEEHHHHHHHHHHCEEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHH-CC
T ss_conf 74451131179960899999997275786798379985890899998861077699998789379999999999886-88
Q ss_pred CHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 98999998513--6762896137999999997631013750120233332100000011111124687512310001466
Q gi|254781103|r 161 DSEMIRRKLSS--ETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQ 238 (598)
Q Consensus 161 ~~~~i~~~l~~--~~~~~~i~r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~ 238 (598)
+.+++.+++++ +++|++|+++|++++.++|.++++|||.+.++++|+||++++++|++||++.|.+|++|||++||..
T Consensus 91 ~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~i~~~~l~gi~~~~~~~R~Yp~~~~~~~viG~~~~~~~G~~GlE~~y~~~ 170 (564)
T 3oc2_A 91 DTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEW 170 (564)
T ss_dssp CHHHHHHHHHTTTTCSCEEEEEEECHHHHHHHHTTCCTTEEEEEEEEEECTTGGGGHHHHCCBCTTSCBCSHHHHHTHHH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999986056784898556999999998746899579988776644788643223663445667733400121333
Q ss_pred -----CCCEEEECC-----------CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf -----851689536-----------6676886742555257677777644210011323431112230232032111210
Q gi|254781103|r 239 -----GLTRVFTTN-----------KGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSI 302 (598)
Q Consensus 239 -----g~~~~~~~~-----------~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~ 302 (598)
|....+... ..+++|.||+||||.++|+.+|++|.+.++..+++.|++|||||+||+||||||+
T Consensus 171 L~G~~G~~~~~~~~~~~~~~~~~~~~~~~~G~~i~lTiD~~lQ~~ae~~l~~~~~~~~~~~g~~vvmd~~TG~ILAm~s~ 250 (564)
T 3oc2_A 171 LAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQ 250 (564)
T ss_dssp HHCBCEEEEEEECTTCCEEEESSCCBCCBCCCCEEBSCCHHHHHHHHHHHHHHHHHHTCCCEEEEEEETTTCBEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCC
T ss_conf 05887818999825875211233345688997079996199986589999988863177502699972688838872378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 014731113444323222223324566432012356544302403204421336-7632221011234543230039998
Q gi|254781103|r 303 PDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTR-NPIKVGKHVIHDYHPQNRILTIPEI 381 (598)
Q Consensus 303 P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~-~~~~~~~~~i~~~~~~~g~it~~~a 381 (598)
|+||||++.......+.||++++.||||||||||++++|||+|++++++.++|. +.+..+....++++..+|.+++++|
T Consensus 251 P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~a 330 (564)
T 3oc2_A 251 PTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGI 330 (564)
T ss_dssp SCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEETTEEEECSCCCCSEEEHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCCEEECCCCCCCCHHHHHH
T ss_conf 98664321246846777577618678863577899999997797256426752786253587102013234552021110
Q ss_pred HHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCEEEHHHCCCCCCHH
Q ss_conf 55036712354320233332001101222576344686542111122--3355441001146875213001002211001
Q gi|254781103|r 382 FRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHSLTISFGHGLSTTPLQTAVAAAAL 459 (598)
Q Consensus 382 l~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p--~~~~~~~~~~~~~Gqg~~~TPlqla~~~ati 459 (598)
|++|||++|+++++++|.+.+.+++++|||++++++|+|++..+..| ..|.....+++++|||+.+||||||++|++|
T Consensus 331 l~~S~Nv~f~~l~~~lg~~~~~~~~~~fG~g~~~~id~p~~~~~~~~~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~i 410 (564)
T 3oc2_A 331 LIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAAL 410 (564)
T ss_dssp HHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 12166719999999875899999999779987779997422157777644322332002213887346799999988762
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCEEEEEECCEEEECCCC--CCCCCC
Q ss_conf 10782301089998630788503201899999999999998733-884641047973576672403512688--766886
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQKVIKK--RYSDTL 536 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~-~GTg~~a~~~g~~vaGKTGTAq~~~~g--~y~~~~ 536 (598)
||+|.+++|++++...+.. ..+++|+++++.+++||+.||+ .||+.++.++||+|||||||||+...+ +|.++.
T Consensus 411 AN~G~~~~p~~~~~~~~~~---~~~vis~~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~ 487 (564)
T 3oc2_A 411 ANDGKSVPLSMTRVDRVPD---GVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENA 487 (564)
T ss_dssp HTTTEECCCBSBCCSSCCC---CEECSCHHHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------C
T ss_pred CCCCEEEECEEEEEECCCC---CCCCCCHHHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 2798796035787403664---3356898999999999974697899888642799679998623611558887622688
Q ss_pred CEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 217999997428880999999807888888874321467899999999999981899855
Q gi|254781103|r 537 NFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596 (598)
Q Consensus 537 ~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P~~ 596 (598)
+++||+||+|++||+|+|+|||++|+.. +.+||.+|||||++||++++++++|+|+.
T Consensus 488 ~~awFvGy~P~~~P~~av~V~v~~~~~~---g~~Gg~~AaPi~~~im~~~l~~~~v~p~~ 544 (564)
T 3oc2_A 488 YRSLFAGFAPATDPRIAMVVVIDEPSKA---GYFGGLVSAPVFSKVMAGALRLMNVPPDN 544 (564)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEC--------CHHHHTHHHHHHHHHHHHHHTTCCCCC
T ss_pred CEEEEEEEEECCCCEEEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6699999987799859999999028988---87655999999999999999766989876
No 2
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=100.00 E-value=0 Score=840.92 Aligned_cols=500 Identities=29% Similarity=0.488 Sum_probs=449.8
Q ss_pred HHHHHEEEEEECCH-----HHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHH--HHHHHHHHCCC
Q ss_conf 98643134344153-----232100046651799745764870816869779999973380998999--99998880799
Q gi|254781103|r 88 LAIRIIQYGNIHPE-----PIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEI--IEKLQIVLPNL 160 (598)
Q Consensus 88 l~~rl~~lq~~~~~-----~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~--~~~L~~il~~~ 160 (598)
++.||++||+++++ +..++++...++|+||.||||||++||.|.+.|+|+++|..+.+.++. +++|+.++ ++
T Consensus 3 ~~~Rl~~lQv~~~~~~~~~~~~~~~~~~~i~a~RG~I~DrnG~~LA~n~~~~~l~~~p~~~~~~~~~~~~~~L~~~l-~i 81 (542)
T 3equ_A 3 GGARGLYLQTVTYNFLKEQGDNRIVRTQALPATRGTVSDRNGAVLALSAPTESLFAVPKDMKEMPSAAQLERLSELV-DV 81 (542)
T ss_dssp ---------------------CCEEEEEEECCCCCCEECTTCCEEEEEEECC----------------------------
T ss_pred CEEEEEEEEEECHHHHHHHHHHCEEEEEEEECCCCCEEECCCCEEEECCEEEEEEEEHHHCCCCHHHHHHHHHHHHH-CC
T ss_conf 33378788773139999999717168889717998389189999650436759999989854710399999998754-98
Q ss_pred CHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 989999985136-7628961379999999976310137501202333321000000111111246875123100014668
Q gi|254781103|r 161 DSEMIRRKLSSE-TKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQG 239 (598)
Q Consensus 161 ~~~~i~~~l~~~-~~~~~i~r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~g 239 (598)
+.+++.++++++ ++|++|++++++++.+++.++++||+.++.++.|+||++++++|++||++.++.|++|+|++||..+
T Consensus 82 ~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~gi~~~~~~~R~Yp~~~~~~~vlG~v~~~~~G~~GiE~~~d~~L 161 (542)
T 3equ_A 82 PVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSL 161 (542)
T ss_dssp --------------------------------------------EEEECTTGGGGHHHHCEECTTSCEEEHHHHHTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999973578738970569999999998669997787543455447420100003334656688625343454340
Q ss_pred -----CCEEEECC-------------CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf -----51689536-------------667688674255525767777764421001132343111223023203211121
Q gi|254781103|r 240 -----LTRVFTTN-------------KGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVS 301 (598)
Q Consensus 240 -----~~~~~~~~-------------~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas 301 (598)
....+... ..+++|.||+||||.++|+.++++|.+.++..++++|++|+|||+||+||||+|
T Consensus 162 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~lTiD~~lQ~~~~~~l~~~~~~~~~~~g~~vv~d~~tG~IlAm~s 241 (542)
T 3equ_A 162 YGEDGAEVVLRDRQGNIVDSLDSPRNKAPQNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEILALAN 241 (542)
T ss_dssp HCBCEEEEEEECTTCCEEEECCCTTCBCCBCCCCEEBSCCHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTTCBEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECC
T ss_conf 34457257874035851223344456678898633730028787877766788887513556348985067783676426
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 00147311134443232222233245664320123565443024032044213367632221011234543230039998
Q gi|254781103|r 302 IPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEI 381 (598)
Q Consensus 302 ~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~a 381 (598)
+|+||||.+.......+.|||+++.||||||||||++++||++|.+++++.++|++. ..++....+++ .+|.+++++|
T Consensus 242 ~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~~g~~~~~~~~~~~~~-~~~~~~~~~~~-~~G~~~l~~a 319 (542)
T 3equ_A 242 TPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPY-KIGPSPVRDTH-VYPSLDVRGI 319 (542)
T ss_dssp ESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHHHTSSCTTCEEECCCE-EETTEEECCSS-CCSEEEHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEECCCCCC-CCCCCCCCCCC-CCCCCCHHHH
T ss_conf 776662212356631124344407677842666899999985696303301145775-34432112336-7784248998
Q ss_pred HHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCEEEHHHCCCCCCHH
Q ss_conf 55036712354320233332001101222576344686542111122--3355441001146875213001002211001
Q gi|254781103|r 382 FRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHSLTISFGHGLSTTPLQTAVAAAAL 459 (598)
Q Consensus 382 l~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p--~~~~~~~~~~~~~Gqg~~~TPlqla~~~ati 459 (598)
|++|||++|+++++++|.+.+.+++++|||+++|++|||++..+..+ ..|...++++++||||+.+||||||++|++|
T Consensus 320 l~~S~N~~~~~l~~~~g~~~~~~~~~~fG~g~~t~idlp~e~~~~~~~~~~~~~~~~~~~~~Gqg~~~Tplq~a~~~a~i 399 (542)
T 3equ_A 320 MQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTAL 399 (542)
T ss_dssp HHHTCHHHHHHHHTTSCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCGGGCCHHHHHHHHTTCSCBBCHHHHHHHHHHH
T ss_pred HHCCCEEHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEE
T ss_conf 54174515457888729588999999749986568998754345434433467311223204776568889985552325
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf 10782301089998630788503201899999999999998733-88464104797357667240351268876688621
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF 538 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~-~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~ 538 (598)
||+|.+++||+++++.+.. .++++++++++.++++|+.||+ +|||+.+.++||+|||||||||...+|+|.++.++
T Consensus 400 aN~G~~~~p~~v~~i~~~~---~~~~~~~~~a~~i~~~l~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~~~~g~~~~~~~~ 476 (542)
T 3equ_A 400 THDGVLLPLSFEKQAVAPQ---GKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGRYADNKHV 476 (542)
T ss_dssp HTTTEECCCBSBCCSSCCC---CEECSCHHHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC-----------CCE
T ss_pred EECCEEEEEEEEEECCCCC---CCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE
T ss_conf 2087899876544202787---7532447789999989986372798187205799548999200015678855789846
Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999997428880999999807888888874321467899999999999981899855
Q gi|254781103|r 539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596 (598)
Q Consensus 539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P~~ 596 (598)
+||+||+|++||+|+++|||++|+.. +++||.+|||||++||+.++.+++|+|+-
T Consensus 477 awFvGy~P~~~p~~av~V~v~~~~~~---g~~G~~~AaPi~~~i~~~~l~~~~~~p~~ 531 (542)
T 3equ_A 477 ATFIGFAPAKNPRVIVAVTIDEPTAH---GYYGGVVAGPPFKKIMGGSLNILGISPTK 531 (542)
T ss_dssp EEEEEEESSSSCCEEEEEEEESCCSS---CCCHHHHTHHHHHHHHHHHHHHTTCCCSS
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999988799859999999428989---87567899999999999999976989789
No 3
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=100.00 E-value=0 Score=783.84 Aligned_cols=496 Identities=20% Similarity=0.309 Sum_probs=416.3
Q ss_pred EEECCHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCC-------------HHHHHHHHHHHHCCCCH
Q ss_conf 34415323210004665179974576487081686977999997338099-------------89999999888079998
Q gi|254781103|r 96 GNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVIS-------------PDEIIEKLQIVLPNLDS 162 (598)
Q Consensus 96 q~~~~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~-------------~~~~~~~L~~il~~~~~ 162 (598)
..+..++..++.+...++|.||.||||||++||+|.+.|+|+++|....+ .+++++.|+.++ +++.
T Consensus 8 ~~l~~~a~~~~~~~~~ipa~RG~I~DrnG~~LA~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~ 86 (702)
T 1qme_A 8 TDLAKEAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVFHKYL-DMEE 86 (702)
T ss_dssp ---------------CCCCCCCCEECTTSCEEEEEECC------------------------------------------
T ss_pred HHHHHHHHHHHEEEEEECCCCCCEEECCCCEEECCEEEEEEEEECCHHHCCCHHHHCCCCHHHHHHHHHHHHHHC-CCCH
T ss_conf 999999986038887971789838908999885030674899987332111101110124667999999988760-9999
Q ss_pred HHHHHHHHCC----CCEEEEECCCCHHHHH----HHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCC--------
Q ss_conf 9999985136----7628961379999999----97631013750120233332100000011111124687--------
Q gi|254781103|r 163 EMIRRKLSSE----TKFQWLRRKLSPQQQK----RILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNR-------- 226 (598)
Q Consensus 163 ~~i~~~l~~~----~~~~~i~r~is~~~~~----~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~-------- 226 (598)
+.+.+++... ..|.+..++++.+... ++..+++|||.+.++++|+||++++++|+|||++.++.
T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~l~Gi~~~~~~~R~YP~~~~as~viG~v~~~~~~~~~~~~i 166 (702)
T 1qme_A 87 SYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDFTTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLL 166 (702)
T ss_dssp -------------------------------------------------CEEECTTSSSSHHHHCCEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEEECCCCCCHHCEECCCCCCCCCCCCCCHH
T ss_conf 99999975533033101002257789999999998876789957743060367888510320314343333333200212
Q ss_pred CCCCCEEECCCCC-----CCEEEEC------------CCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 5123100014668-----5168953------------6667688674255525767777764421001132343111223
Q gi|254781103|r 227 GITGIEKFLDMQG-----LTRVFTT------------NKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVIL 289 (598)
Q Consensus 227 G~~GlE~~~d~~g-----~~~~~~~------------~~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvm 289 (598)
|++|||++||..+ ....+.+ ...+.+|.||+||||.++|+.+|++|.+.++..++++|++|+|
T Consensus 167 G~~GlE~~~d~~L~G~~g~~~~~~~~~g~~~~~~~~~~~~~~~G~~I~lTID~~lQ~~~e~~l~~~~~~~~~~~g~~Vvm 246 (702)
T 1qme_A 167 GTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLV 246 (702)
T ss_dssp ECSHHHHHTHHHHHCBCC---------------------CCBCCCEEEESCCHHHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 27888888787538988864211013685211333233467899735997789999999999999998616752379999
Q ss_pred ECCCHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 0232032111210014731113444-323222223324566432012356544302403204421336763222101123
Q gi|254781103|r 290 NVSTGEVISMVSIPDYDPHEAFKGK-KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHD 368 (598)
Q Consensus 290 d~~TGeILAmas~P~~dpn~~~~~~-~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~ 368 (598)
||+||+||||||+|+||||.+.... ...|.|+++++.||||||||||++++|||+|.+++++.++|. .+.+++..++|
T Consensus 247 d~~TG~IlAmas~p~~d~n~~~~~~~~~~~~~~~~~~~~~PGStfK~~t~aaALe~g~~~~~~~~~~~-~~~~~~~~~~~ 325 (702)
T 1qme_A 247 SAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSS-ELKIADATIRD 325 (702)
T ss_dssp ETTTCBEEEEEEESCCCTTTCTTCCTTCCCCCTTTSCCBCCGGGGHHHHHHHHHHTTCCCTTCEEECS-CEEETTEEECC
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEECC-CCEECCCCCCC
T ss_conf 77899089983257777554434563222025310112577520229989999976973233023013-40436852102
Q ss_pred CC-----CCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 45-----4323003999855036712354320233332001101222576344686542111122335544100114687
Q gi|254781103|r 369 YH-----PQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGH 443 (598)
Q Consensus 369 ~~-----~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gq 443 (598)
|+ .++|.+|+++||++|||++|+++++++|.+.+.+++++|||++++++|+|+|..|.+|. |...++++++|||
T Consensus 326 ~~~~~~~~~~G~itl~~al~~S~N~~~~~l~~~lG~~~~~~~~~~fG~g~~t~i~~~~e~~g~~p~-~~~~~~a~~~~Gq 404 (702)
T 1qme_A 326 WDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPA-DNIVNIAQSSFGQ 404 (702)
T ss_dssp HHHHTTSCSCCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSSSCCCCBCCC-SSHHHHHHGGGTC
T ss_pred CCCCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHCC
T ss_conf 446766778720013441252337125666542584367889886078866688875345776876-5533333143079
Q ss_pred CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC--------CCCCCCHHHHHHHHHHHHHHHC---------CCC
Q ss_conf 52130010022110011078230108999863078850--------3201899999999999998733---------884
Q gi|254781103|r 444 GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV--------SRIVLKKNTVKTMRSLLREGVT---------GGS 506 (598)
Q Consensus 444 g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~--------~~~vis~~~a~~l~~~l~~vv~---------~GT 506 (598)
++++||||||++|++|||+|.+++||+|+++.+.++.+ .+++++++++..++++|+.|+. .||
T Consensus 405 ~~~vTPlqma~ayaaiANgG~~~~P~lV~~I~d~~g~~i~~~~~~~~~~~is~~~a~~~~~~m~~vv~~~~~gt~~~~gt 484 (702)
T 1qme_A 405 GISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHST 484 (702)
T ss_dssp SCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEETTTTEEEECCCCEEECCSCHHHHHHHHHHHHHHHHCTTTCTTEETTT
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEECCCC
T ss_conf 86679999999999997198596108999998699978740487335766899999999999998622245540312677
Q ss_pred EE-ECCCCCEEEEEECCEEEECC--CCCCCC--CCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 64-10479735766724035126--887668--86217999997428880999999807888888874321467899999
Q gi|254781103|r 507 GR-RAFVPGFEVGGKTGTAQKVI--KKRYSD--TLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGN 581 (598)
Q Consensus 507 g~-~a~~~g~~vaGKTGTAq~~~--~g~y~~--~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~ 581 (598)
|+ .+.++||+|||||||||+.. .++|.. ..+++||+||||++||+|+|+|+|++|+.. .+.+||.+|+|||++
T Consensus 485 g~~~a~~~g~~vaGKTGTAq~~~~~~~~~~~~~~~~~~sfvg~~P~~~P~~~~~V~v~~p~~~--~g~~gg~va~pi~~~ 562 (702)
T 1qme_A 485 GKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHY--SGIQLGEFANPILER 562 (702)
T ss_dssp TEESSCBTTBCCEEEEEEEECBCGGGSSBCCSTTCEEEEEEEEESSSSCSEEEEEEEESCSSC--CHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCC--CCCCHHHHHHHHHHH
T ss_conf 754436899789999950302477788410156550699999978799819999999788866--787215899999999
Q ss_pred HH--HHHHHHCCCCCCC
Q ss_conf 99--9999981899855
Q gi|254781103|r 582 II--RRSASMLGVKPVF 596 (598)
Q Consensus 582 I~--~~~~~~~~i~P~~ 596 (598)
|+ ...+++..++|+.
T Consensus 563 i~~~~~~l~~~~~~~~~ 579 (702)
T 1qme_A 563 ASAMKDSLNLQTTAKAL 579 (702)
T ss_dssp HHHHHHHCCCC------
T ss_pred HHHHHHHCCCCCCCCCH
T ss_conf 98765220367778633
No 4
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=100.00 E-value=0 Score=759.34 Aligned_cols=516 Identities=19% Similarity=0.209 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHH-----HHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf 75778888664799999999999999986431343441532-----3210004665179974576487081686977999
Q gi|254781103|r 62 RRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEP-----IAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSL 136 (598)
Q Consensus 62 ~~kk~~~~~k~Ri~il~~v~~ii~~il~~rl~~lq~~~~~~-----~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i 136 (598)
+||...+..+.|+.+++++|+++|++|++||+++|+++++. ..++.+...+++.||.||||||++||.|.+.|+|
T Consensus 1 ~~~~~~~~i~~R~~~l~~~~~~~~~~l~~rL~~lQi~~~~~y~~~~~~~~~~~~~~~~~RG~IyDrnG~~LA~n~~~~~l 80 (680)
T 2wad_A 1 MRKFNSHSIPIRLNLLFSIVILLFMTIIGRLLYMQVLNKDFYEKKLASASQTKVTTSSARGEIYDASGKPLVENTLKQVV 80 (680)
T ss_dssp -------------------------------------------------CEEEEECCCCCCCEECTTSCBSEEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCCCEEECCCCCEEEEEEEEEEE
T ss_conf 98743576449999998678899999999999853201699999997266089995388983991899998861146799
Q ss_pred EEEHHHHCCHHHHH---HHHHHHHCCCC----H-----------HHHHH-------------------------------
Q ss_conf 99733809989999---99988807999----8-----------99999-------------------------------
Q gi|254781103|r 137 YVEPHKVISPDEII---EKLQIVLPNLD----S-----------EMIRR------------------------------- 167 (598)
Q Consensus 137 ~i~P~~i~~~~~~~---~~L~~il~~~~----~-----------~~i~~------------------------------- 167 (598)
.++|......++.. ..|+..+...+ . +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (680)
T 2wad_A 81 SFTRSNKMTATDLKEIAKKLLTYVSISSPNLTERQLADYYLADPEIYKKTVEALPSEKRLDSDGNRLSESELYNNAVDSV 160 (680)
T ss_dssp EEECCTTCCHHHHHHHHHHHTTTSCCCCCCCCHHHHHHHHHTSHHHHHHHHTTCC-------------CHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99822024423599999999887357727777887777751388888888876456776665554402999988766442
Q ss_pred -------------------HHHCCC---CEEEEECCCCHHHHHHHHH--HHCCCCEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -------------------851367---6289613799999999763--1013750120233332100000011111124
Q gi|254781103|r 168 -------------------KLSSET---KFQWLRRKLSPQQQKRILS--FGLPGVGFRLEKSRFYPAASHASHVVGYVDI 223 (598)
Q Consensus 168 -------------------~l~~~~---~~~~i~r~is~~~~~~I~~--~~lpGi~~~~~~~R~YP~~~lashiiGyv~~ 223 (598)
...... ......+.++.++...+.+ ..+|||.+..++.|.||.+.+ +|+|||++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pGv~~~~~~~r~yp~~~~-a~vlGyv~~ 239 (680)
T 2wad_A 161 PTSQLNYTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPGISISTSWDRKILETSL-SSIVGSVSS 239 (680)
T ss_dssp SCSCCCCCHHHHHHHHHHHHHHTSCTTCEEECCCSCCCHHHHHHHHHHGGGSTTEEEEEEEEEEECSSTT-HHHHCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHH-HHHCCCCCC
T ss_conf 3565434477788899998752012455314531679999999999864428976788512001760666-866085113
Q ss_pred ---------------------CCCCCCCCEEECCCC-----CCCEEEECC----------CCCCCCCCCEEEEHHHHHHH
Q ss_conf ---------------------687512310001466-----851689536----------66768867425552576777
Q gi|254781103|r 224 ---------------------DNRGITGIEKFLDMQ-----GLTRVFTTN----------KGEKNLQPIRLALDLRIQNI 267 (598)
Q Consensus 224 ---------------------d~~G~~GlE~~~d~~-----g~~~~~~~~----------~~~~~g~dI~lTID~~lQ~~ 267 (598)
|..|++|||++||+. |......+. ..+.+|.||+||||.++|..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~d~vG~~GlE~~yd~~L~G~~g~~~~~~d~~g~~~~~~~~~~~~~G~~i~lTiD~~lQ~~ 319 (680)
T 2wad_A 240 EKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDS 319 (680)
T ss_dssp STTCSCGGGHHHHHHHTCCTTCCCBCSHHHHHTHHHHSCBCCEEEEEECTTSCEEEEEEEECCBCCCEEEESCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEEEHHHHHHH
T ss_conf 34454366666544138766552565150677764038776875389743010012223467888875132206869999
Q ss_pred HHHHHHHHCCCCC-------CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7764421001132-------343111223023203211121001473111344432322222332456643201235654
Q gi|254781103|r 268 VHQELVENKKKYN-------AESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAM 340 (598)
Q Consensus 268 ~e~~l~~~~~~~~-------a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aa 340 (598)
++++|.++++... ...+++|||||+||+||||+|.| ||+++. ...++.|||+++.||||||||||++++
T Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~~~vv~dp~tG~IlAm~~~~-~~~~~~---~~~~~~n~a~~~~~~PGStfKp~~~~a 395 (680)
T 2wad_A 320 VDALLKSYFNSELGNGGAKYSEGVYAVALNPQTGAVLSMSGLK-HDLKTG---ELTPDSLGTVTNVFVPGSVVKAATISS 395 (680)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCEEEEEEECTTTCBEEEEEEEE-ECTTTC---CEEECTTHHHHCCBCCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHCCCCC-CCCCCC---HHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999998665203566778669999966658044136763-122100---134544201111357875216788999
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHCCCCCEEEEEEECC------------------CC
Q ss_conf 43024032044213367632221011234543---2300399985503671235432023------------------33
Q gi|254781103|r 341 GIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQ---NRILTIPEIFRYSSNIGAAQIADAM------------------GI 399 (598)
Q Consensus 341 aLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~---~g~it~~~al~~S~Nv~~~~i~~~l------------------g~ 399 (598)
|||+|.++|++.++|++.+..++.+++||... +|.+|+++||++|||++|+++++++ |.
T Consensus 396 ALe~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~itl~~Al~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~ 475 (680)
T 2wad_A 396 GWENGVLSGNQTLTDQPIVFQGSAPIYSWYKLAYGSFPITAVEALEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAM 475 (680)
T ss_dssp HHHTTSCCSSCCEEECCBCBTTSCCBCCTTTTTTCSEEECHHHHHHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHH
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHH
T ss_conf 99708999873571378422368864210136778877205636450755999999987502445403330426787654
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCC
Q ss_conf 32001101222576344686542111122335544100114687521300100221100110782301089998630788
Q gi|254781103|r 400 QGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESE 479 (598)
Q Consensus 400 ~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~ 479 (598)
+++.+++++|||++++++|||+|+.|.+|+.|...++++++||||+++||||||++|++|||+|++++||+|+++.|.++
T Consensus 476 ~kl~~~~~~~G~~~~~~i~lp~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~iaN~G~~~~P~~v~~I~d~~~ 555 (680)
T 2wad_A 476 GKLRSTFGEYGLGSATGIDLPDESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNND 555 (680)
T ss_dssp HHHHHHHHHTTSSSCCCCSSSCCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCC
T ss_conf 68899999709986568866544567677523333223223577677899999999999975975972089998744777
Q ss_pred C--------------CCCCCCCHHHHHHHHHHHHHHHC----CCCEEEC-CCCCEEEEEECCEEEECCCCCCCCCCCEEE
Q ss_conf 5--------------03201899999999999998733----8846410-479735766724035126887668862179
Q gi|254781103|r 480 K--------------VSRIVLKKNTVKTMRSLLREGVT----GGSGRRA-FVPGFEVGGKTGTAQKVIKKRYSDTLNFNS 540 (598)
Q Consensus 480 ~--------------~~~~vis~~~a~~l~~~l~~vv~----~GTg~~a-~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~ 540 (598)
. ..+.+++++++..+++||+.||+ .|||+.+ ..++|+|||||||||+...+++ +.+++|
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~m~~Vv~gt~~~gt~~~~~~~~~~~vaGKTGTAq~~~~~~~--~~~~aw 633 (680)
T 2wad_A 556 KGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSPLTTGRAFSDGATVSISGKTGTGESYVAGGQ--EATNTN 633 (680)
T ss_dssp TSSEEEEEEECCCCEEEECSSCHHHHHHHHHHHHHHHHCCSTTCCCGGGTTTCSSCCEEEECC--------------CCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCC--CCCCEE
T ss_conf 555673012368752465679999999999999998728786634563215799889998434352579998--667089
Q ss_pred EEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99997428880999999807888888874321467899999999999981
Q gi|254781103|r 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 541 FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
|+||+|++||+|+|+|||+++ +.+|+.+|+||||+||+......
T Consensus 634 FvGy~P~~~P~~~v~V~v~~~------~~~g~~~A~~i~~~i~~~y~~~~ 677 (680)
T 2wad_A 634 AVAYAPTENPQIAVAVVFPHN------TNLTKNVGPAIARDIINLYNQHH 677 (680)
T ss_dssp EEEEESTTSCCEEEEEECTTC------CCCSCCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCEEEEEEEEECC------CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999997689869999999689------95388899999999999998558
No 5
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=100.00 E-value=0 Score=733.51 Aligned_cols=473 Identities=18% Similarity=0.242 Sum_probs=394.6
Q ss_pred HHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCEEEE
Q ss_conf 3210004665179974576487081686977999997338099899999998880799989999985136----762896
Q gi|254781103|r 103 IAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSE----TKFQWL 178 (598)
Q Consensus 103 ~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~----~~~~~i 178 (598)
..++++...++|+||.||||||++||+|.+.|+|+++|..+.+.+ ...|+..| .++.+.+.+++.+. ..|+++
T Consensus 116 ~~~~~~~~~~~a~RG~I~DrnG~~LA~~~~~~~v~i~P~~i~~~~--~~~la~~L-~~~~~~i~~~l~~~~~~~~~~v~~ 192 (646)
T 1vqq_A 116 KDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKD--YKAIAKEL-SISEDYIKQQMDQNWVQDDTFVPL 192 (646)
T ss_dssp SSEEEEEEEECCCCCCEECTTCCEEEEEEEEEEEEECGGGCCTTT--HHHHHHHH-TCCHHHHHHHHTSTTCCTTCCEEE
T ss_pred CCCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCHHH--HHHHHHHH-CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 888089887328998889789999452556769999948669244--99999773-899999999999864045670475
Q ss_pred EC--CCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCC-----------------CCCCCCCCEEECCCCC
Q ss_conf 13--7999999997631013750120233332100000011111124-----------------6875123100014668
Q gi|254781103|r 179 RR--KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDI-----------------DNRGITGIEKFLDMQG 239 (598)
Q Consensus 179 ~r--~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~-----------------d~~G~~GlE~~~d~~g 239 (598)
.. .+++...... +.+|+.+.+...|+||++++++|+|||++. |..|++|||+.||+.+
T Consensus 193 ~~~~~~~~~~~~~~---~~~gl~~~~~~~R~YP~~~~aahliGyv~~~~~e~l~~~~~~~y~~~~~vG~sGlE~~yd~~L 269 (646)
T 1vqq_A 193 KTVKKMDEYLSDFA---KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKL 269 (646)
T ss_dssp EEESCCSHHHHHHH---HHTTCEEEEEEEEECTTGGGGHHHHCCEEECCTTGGGSGGGTTCCTTCEEECSHHHHHTHHHH
T ss_pred EHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 31244899999874---048825766466777761037662765687898999753430466300046401223433311
Q ss_pred CC-----EEEE-----------CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 51-----6895-----------3666768867425552576777776442100113234311122302320321112100
Q gi|254781103|r 240 LT-----RVFT-----------TNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIP 303 (598)
Q Consensus 240 ~~-----~~~~-----------~~~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P 303 (598)
.+ .... ....+++|.||+||||.++|+++++++.. ..+++|+|||+||+||||+|.|
T Consensus 270 ~G~~G~~~~~~~~~g~~~~~~~~~~~~~~G~dI~lTID~~lQ~~a~~~l~~-------~~~~~va~~~~tGeilA~as~p 342 (646)
T 1vqq_A 270 QHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNMKN-------DYGSGTAIHPQTGELLALVSTP 342 (646)
T ss_dssp CCBCEEEEEEEEC-CCCEEEEEEEECCBCCCCEEBSCCHHHHHHHHHHHTT-------SSEEEEEEETTTTEEEEEEEES
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHC-------CCCCEEEEECCCCCEEEEEECC
T ss_conf 588872799971677632220013577899745885247788889986422-------3352899824667067775057
Q ss_pred CCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC-----CCCCC
Q ss_conf 14731113444-----------323222223324566432012356544302403204421336763222-----10112
Q gi|254781103|r 304 DYDPHEAFKGK-----------KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG-----KHVIH 367 (598)
Q Consensus 304 ~~dpn~~~~~~-----------~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~-----~~~i~ 367 (598)
+||||.+.... .....++++++.|||||||||+|+++||++|.++|++.++|++..... ++.++
T Consensus 343 ~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe~g~i~~~~~~~~~g~~~~~~~~~g~~~~~ 422 (646)
T 1vqq_A 343 SYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVT 422 (646)
T ss_dssp CCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHHTTSSCTTCEEEECSSEECSSGGGTTCCEE
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCCC
T ss_conf 65544211465312212233562145555545111345420178899999769979998799478414346776764334
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCC-C
Q ss_conf 3454323003999855036712354320233332001101222576344686542111122-3355441001146875-2
Q gi|254781103|r 368 DYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP-SQWKRIHSLTISFGHG-L 445 (598)
Q Consensus 368 ~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p-~~~~~~~~~~~~~Gqg-~ 445 (598)
+++..+|.+++++||++|||++|++++.++|.+.+.+++++||||+++++++|.+..+..+ ..|....+++++|||| +
T Consensus 423 ~~~~~~G~v~l~~al~~S~N~~f~~la~~lg~~~l~~~a~~fG~g~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v 502 (646)
T 1vqq_A 423 RYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEI 502 (646)
T ss_dssp CSSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 66788872321203057878999999987638899988876368988886665543446776678752242204677751
Q ss_pred EEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEE
Q ss_conf 13001002211001107823010899986307885032018999999999999987338846410479735766724035
Q gi|254781103|r 446 STTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQ 525 (598)
Q Consensus 446 ~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq 525 (598)
.+||||||++||+|||+|.+++||||+++.+ ....++++|+++++.+++||+.||++|||+.+..++++|||||||||
T Consensus 503 ~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~--~~~~~~vis~~~a~~l~~~m~~VV~~Gt~~~~~~~~~~vaGKTGTAe 580 (646)
T 1vqq_A 503 LINPVQILSIYSALENNGNINAPHLLKDTKN--KVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAE 580 (646)
T ss_dssp BBCHHHHHHHHHGGGTTTCEECCBCBTTSCC--CEEECCCSCHHHHHHHHHHHHHHHHTTTTTTTCCTTSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCE
T ss_conf 2379999999999974981861189955788--76777789999999999999999754340221158988999826570
Q ss_pred ECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12688766886217999997428880999999807888888874321467899999999999981899
Q gi|254781103|r 526 KVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVK 593 (598)
Q Consensus 526 ~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~ 593 (598)
....+++ .+.+|+||+|| |.+||+|+++|+|++|+... .+.+|+.+|+|||++|++..+.+|.|.
T Consensus 581 ~~~~~g~-~~~~~awFvgf-~~d~P~~av~V~ve~~~~~g-~~~~g~~vA~pv~~~i~e~~~~~~~id 645 (646)
T 1vqq_A 581 LKMKQGE-TGRQIGWFISY-DKDNPNMMMAINVKDVQDKG-MASYNAKISGKVYDELYENGNKKYDID 645 (646)
T ss_dssp CC-------CCEEEEEEEE-ETTSCSCEEEEEEECCTTTT-THHHHHHHHHHHHHHHTGGGTSCCCTT
T ss_pred ECCCCCC-CCCEEEEEEEE-CCCCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7677899-89806999998-58999699999997278888-662328999999999998688757999
No 6
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=645.87 Aligned_cols=414 Identities=21% Similarity=0.269 Sum_probs=339.7
Q ss_pred CHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 53232100046651799745764870816869779999973380998999999988807999899999851367628961
Q gi|254781103|r 100 PEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLR 179 (598)
Q Consensus 100 ~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~~~~~~i~ 179 (598)
.....+|.-.......||.| +++|++||.|++. +..
T Consensus 28 ~~~~n~r~~~~~~~~~rG~I-~~~g~~la~s~~~--------------------------------------~~~----- 63 (483)
T 3lo7_A 28 ADPRNQRVLLDEYSRQRGQI-TAGGQLLAYSVAT--------------------------------------DGR----- 63 (483)
T ss_dssp ---------CCGGGSCCCCE-EETTEEEEEEEEC--------------------------------------SSS-----
T ss_pred CCCCCCHHHHHHHCCCCCCE-EECCEEEEEEEEE--------------------------------------CCC-----
T ss_conf 79987468999734768988-8599799987870--------------------------------------898-----
Q ss_pred CCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE---------EEECCCCC
Q ss_conf 379999999976310137501202333321000000111111246875123100014668516---------89536667
Q gi|254781103|r 180 RKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGLTR---------VFTTNKGE 250 (598)
Q Consensus 180 r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~g~~~---------~~~~~~~~ 250 (598)
-.++|+||++++++|||||++.+ .|.+|||++||..+.+. .......+
T Consensus 64 ----------------------~~~~R~Yp~g~~~a~v~Gy~~~~-~G~~GlE~~~~~~L~G~~~~~~~~~~~~~~~~~~ 120 (483)
T 3lo7_A 64 ----------------------FRFLRVYPNPEVYAPVTGFYSLR-YSSTALERAEDPILNGSDRRLFGRRLADFFTGRD 120 (483)
T ss_dssp ----------------------SCEEEECSSHHHHHHHHCCEETT-TEECHHHHHTHHHHHTCCTTC-------------
T ss_pred ----------------------CEEEEECCCCCCHHCEEEEECCC-CCHHHHHHHHHHHCCCCCCCEECEECCCCCCCCC
T ss_conf ----------------------46998893975230223155787-6567678987886179736420248553343589
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC---------------CC
Q ss_conf 688674255525767777764421001132343111223023203211121001473111344---------------43
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG---------------KK 315 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~---------------~~ 315 (598)
.+|.+|+||||+++|++++++|.+.+ .++.+|++|+|||+||+||||||.|+||||.+... ..
T Consensus 121 ~~G~~I~tTID~~lQ~~a~~al~~~~--~~~~~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~ 198 (483)
T 3lo7_A 121 PRGGNVDTTINPRIQQAGWDAMQQGC--YGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPA 198 (483)
T ss_dssp -CCCEEEECCCHHHHHHHHHHHHHBT--TBCCCEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 99995897469999999999998635--3666279999978999299996068888210136774112799987314643
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC--CCCCCC----CCCCCCCHHHHHHCCCCCE
Q ss_conf 2322222332456643201235654430240320442133676322210--112345----4323003999855036712
Q gi|254781103|r 316 EGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKH--VIHDYH----PQNRILTIPEIFRYSSNIG 389 (598)
Q Consensus 316 ~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~--~i~~~~----~~~g~it~~~al~~S~Nv~ 389 (598)
.++.|||+++.|||||||||||+++|||+|.+.+++.++|+ .+.+.+. .+.+++ ..+|.+++++||++|||++
T Consensus 199 ~pl~Nra~~~~y~PGStfK~~t~aaaLe~G~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~Al~~S~N~~ 277 (483)
T 3lo7_A 199 SPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAP-TIPLPGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTA 277 (483)
T ss_dssp CTTSCTTTSCCBCCGGGGHHHHHHHHHHTTCCTTCEEECCS-BCCC-------BCC---CCSSSSEEEHHHHHHTTCHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHH
T ss_conf 31014044125379884899999999980985200010368-61136864211100254468987343999998604258
Q ss_pred EEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCE
Q ss_conf 3543202333320011012225763446865421111223355441001146875-213001002211001107823010
Q gi|254781103|r 390 AAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPP 468 (598)
Q Consensus 390 ~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P 468 (598)
|++++.++|.+.+.+++++|||++++..+.+.+.....+..|.....+.++|||| +.+||||||++||+|||+|.+++|
T Consensus 278 f~~l~~~~G~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANgG~~~~P 357 (483)
T 3lo7_A 278 FVQLGIRTGADALRSMARAFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRP 357 (483)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTTTEEECC
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 88999983940343357760899855677644443445653334543220110455446778877766654259833266
Q ss_pred EEEEEEECCCCC--------CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEE
Q ss_conf 899986307885--------032018999999999999987338846410479735766724035126887668862179
Q gi|254781103|r 469 TFMIRSREESEK--------VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS 540 (598)
Q Consensus 469 ~lv~~~~~~~~~--------~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~ 540 (598)
|+|+++.+.++. ..++++++++++.|+++|+.|+..+++ .+.++|++|||||||||...++.+ ...|+|
T Consensus 358 ~lV~~i~~~dg~~i~~~~~~~~~~~is~~~a~~l~~~m~~v~~~~~~-~~~~~g~~vAGKTGTaq~~~d~~~--~~~~aW 434 (483)
T 3lo7_A 358 YLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGAEKVAQQ-KGAIPGVQIASKTGTAEHGTDPRH--TPPHAW 434 (483)
T ss_dssp BSEEEEECTTCCEEEECCCCEEEECSCHHHHHHHHHHHHHHHHHSCC-TTCCTTCCCEEEEEEECCSSCTTT--SCCEEE
T ss_pred CEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEE-CCCCCCCEEEEEEECCCCCCCCCC--CCCCEE
T ss_conf 01456766987532013564332137999999999999754222002-234489779999853225768777--787289
Q ss_pred EEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999974288809999998078888888743214678999999999999
Q gi|254781103|r 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSAS 588 (598)
Q Consensus 541 FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~ 588 (598)
|+||+|+++|+|+|+|||+++.. ....+||.+|||||++||+.+|.
T Consensus 435 FvGfaP~~~P~~avaV~ve~g~~--~~~~~G~~~AaPI~~~im~~~L~ 480 (483)
T 3lo7_A 435 YIAFAPAQAPKVAVAVLVENGAD--RLSATGGALAAPIGRAVIEAALQ 480 (483)
T ss_dssp EEEEESTTSCCEEEEEEETTCCC--SSSSSSCTTHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCEEEEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99997779993999999977997--88875169999999999999976
No 7
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=100.00 E-value=0 Score=502.02 Aligned_cols=321 Identities=17% Similarity=0.167 Sum_probs=265.3
Q ss_pred CCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCC---CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76886742555257677777644210011323---431112230232032111210014731113444323222223324
Q gi|254781103|r 250 EKNLQPIRLALDLRIQNIVHQELVENKKKYNA---ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGI 326 (598)
Q Consensus 250 ~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a---~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~ 326 (598)
.+.|.+|+||||.++|+.+|+++.+......+ .++++|||||+||+||||++.|+|++|... ..||++++.
T Consensus 29 ~~~G~~I~tTiD~~~Q~~~e~~l~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~vg~~~~~~~~~~------~~N~a~~~~ 102 (390)
T 2v2f_F 29 LTTGMDVYTNVDQEAQKHLWDIYNSDQYVSYPDDDLQVASTVVDVSNGKVIAQLGARHQASNVSF------GTNQAVETN 102 (390)
T ss_dssp TTSCEEEEECCCHHHHHHHHHHHHSSSSCCCSSSCCEEEEEEEETTTTEEEEEECCCC-----CC------CCCTTTCCC
T ss_pred HCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCC------CCCHHHHCC
T ss_conf 46998899478899999999999753442167877048999998899949999967877767655------643222056
Q ss_pred CCCCCCCHHHH-HHHHHHCCCEECCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEEECCCCCCC
Q ss_conf 56643201235-6544302403204421336763--222101123454-3230039998550367123543202333320
Q gi|254781103|r 327 FEMGSIFKVFT-IAMGIDSGLFTVKDLFDTRNPI--KVGKHVIHDYHP-QNRILTIPEIFRYSSNIGAAQIADAMGIQGH 402 (598)
Q Consensus 327 yePGStfKp~t-~aaaLe~g~i~~~~~~~~~~~~--~~~~~~i~~~~~-~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~ 402 (598)
||||||||||+ +++|||+|++++++.+.|+.++ ..++++++||+. ++|.+|+++||++|||++|+++++++|.+.+
T Consensus 103 ~~pGStfKp~~~~aaale~g~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~vtl~~Al~~S~N~~~~~l~~~~G~~~~ 182 (390)
T 2v2f_F 103 RDWGSAMKPITDYAPAIEYGVYDSTATMVNDIPYNYPGTSTPVYNWDRAYFGNITLQYALQQSRNVTAVETLNKVGLDRA 182 (390)
T ss_dssp SCCGGGGHHHHTHHHHHHTTSCSBTTCEEEESCEECTTSSCEECCTTSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHCCCHHH
T ss_conf 68874177999999999769866640575267610157998743079985774229999986330378899875392789
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC-
Q ss_conf 0110122257634468654211112233554410011468752130010022110011078230108999863078850-
Q gi|254781103|r 403 KEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV- 481 (598)
Q Consensus 403 ~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~- 481 (598)
.+++++|||..+. +..+. ........+|+++.+||||||++|++|||+|.+++||+|+++.+.++..
T Consensus 183 ~~~~~~~g~~~~~------~~~~~------~~~~~~~~~~g~~~vtplqma~ayaaiaN~G~~~~P~~v~~i~d~~g~~~ 250 (390)
T 2v2f_F 183 KTFLNGLGIDYPS------MHYAN------AISSNTTESNKQYGASSEKMAAAYAAFANGGIYHKPMYINKVVFSDGSKK 250 (390)
T ss_dssp HHHHHTTTCCCSS------CCGGG------GSCSCSSCCCTTSSCCHHHHHHHHHHHHTTSEECCCBCEEEEEETTSCEE
T ss_pred HHHHHHCCCCCCC------CCCCC------CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEEECCCCCE
T ss_conf 9999982999876------44442------22321110586404589999999999864986706788777985488600
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCC------CCCCCEEEEEEEEECCCC
Q ss_conf -----320189999999999999873388464104797357667240351268876------688621799999742888
Q gi|254781103|r 482 -----SRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRY------SDTLNFNSFLAVFPTTDP 550 (598)
Q Consensus 482 -----~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y------~~~~~~~~FvG~~P~~dP 550 (598)
.++++++++++.++++|+.||++|||+++++++++|||||||||......+ .....++||+|| +|
T Consensus 251 ~~~~~~~~v~~~~~a~~~~~~l~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~wfvG~----~P 326 (390)
T 2v2f_F 251 EFSDVGTRAMKETTAYMMTEMMKTVLAYGTGRGAYLPWLAQAGKTGTSNYTDDEIEKHIKNTGYVAPDEMFVGY----TR 326 (390)
T ss_dssp ECCCCCEECSCHHHHHHHHHHHHHHHHTSTTGGGCCTTSCCEEEEEECCCCC-----------CCBSEEEEEEE----CS
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE----CC
T ss_conf 22564434553899999999876460267631102799707898147667777653334556777664699997----89
Q ss_pred EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 099999980788888887432146789999999999998189
Q gi|254781103|r 551 QYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592 (598)
Q Consensus 551 ~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i 592 (598)
+|+++|||++++.......+|+.+|||||++||+.++..+..
T Consensus 327 ~~~~~VwvG~~~~~~~~~~~G~~~aapi~~~i~~~~~~~~~~ 368 (390)
T 2v2f_F 327 KYSMAVWTGYSNRLTPIVGDGFLVAAKVYRSMITYLSEGSNP 368 (390)
T ss_dssp SEEEEEEEECSSTTSCBCGGGGGHHHHHHHHHHHHHHTTC-C
T ss_pred CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 979999994179988868873279999999999999636997
No 8
>2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B
Probab=100.00 E-value=0 Score=474.70 Aligned_cols=355 Identities=17% Similarity=0.223 Sum_probs=269.8
Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC----CC--C--------CEEE---ECCCCCCCCCCCE
Q ss_conf 1375012023333210000001111112468751231000146----68--5--------1689---5366676886742
Q gi|254781103|r 195 LPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDM----QG--L--------TRVF---TTNKGEKNLQPIR 257 (598)
Q Consensus 195 lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~----~g--~--------~~~~---~~~~~~~~g~dI~ 257 (598)
|.|+.-.+...|+||++....+..+|+.... ...+.|..++. .. . .+.. ..+.-...|.+|+
T Consensus 16 lA~i~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gGl~I~ 94 (494)
T 2bg1_A 16 IASIESDMLRQDFLPSGTVTGISQDYLYFTT-LAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGYKIT 94 (494)
T ss_dssp ------------------------CHHHHHH-HHHHHHHHHHHHHHHTTCCTTTTSCHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8557434110588778678877551899999-999998888877641441067777778888899989999981990899
Q ss_pred EEEHHHHHHHHHHHHHHHCCCCCC----CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 555257677777644210011323----4311122302320321112100147311134443232222233245664320
Q gi|254781103|r 258 LALDLRIQNIVHQELVENKKKYNA----ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIF 333 (598)
Q Consensus 258 lTID~~lQ~~~e~~l~~~~~~~~a----~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStf 333 (598)
||||+++|+.+|++|.+.+...+. ..+++|+|||+||+|||||+.|+|+||. +|||+++.|||||||
T Consensus 95 TTiD~~lQ~~ae~al~~~~~~~~~~~~~~~~a~Vv~d~~TG~IlAmvgg~~y~~~~---------~Nra~~~~rqPGStf 165 (494)
T 2bg1_A 95 TTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQTGAILGFVGGRNYQENQ---------NNHAFDTKRSPASTT 165 (494)
T ss_dssp ECCCHHHHHHHHHHHHHHGGGGCCSSSSCEEEEEEEETTTCBEEEEECCSCTTTCC---------CCTTTTCCBCCGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCC---------CCHHHHCCCCCHHHH
T ss_conf 67188999999987766655410567761599999989999099999898999776---------567570886872239
Q ss_pred HHHH-HHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEEECCCCCCCH--HHCCCC
Q ss_conf 1235-6544302403204421336763222101123454-32300399985503671235432023333200--110122
Q gi|254781103|r 334 KVFT-IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHP-QNRILTIPEIFRYSSNIGAAQIADAMGIQGHK--EFLYRL 409 (598)
Q Consensus 334 Kp~t-~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~-~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~--~~~~~f 409 (598)
|||+ +++|||+|.+++++.++|......++..+++++. ++|.+++++||++|||++|+++...++...+. .+++.|
T Consensus 166 KP~v~yaaAle~g~~~~~t~~~d~p~~~~~~~~~~~~~~~~~G~vtl~~al~~S~Ni~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 2bg1_A 166 KPLLAYGIAIDQGLMGSETILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYMEKM 245 (494)
T ss_dssp HHHHTHHHHHHTTSCCTTCEEECSCCBCTTSCBCCBTTBCCCCEEEHHHHHHHTCSHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEECCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99999999997699997555578872113667424467878744689999863746188888988544424334444135
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC-------C
Q ss_conf 257634468654211112233554410011468752130010022110011078230108999863078850-------3
Q gi|254781103|r 410 GLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV-------S 482 (598)
Q Consensus 410 G~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~-------~ 482 (598)
|+ +.|.. ...++++|+++.+||||||++|++|||+|.+++||+|+++.+.++++ .
T Consensus 246 g~------~~~~~------------~~~s~a~Gg~~~vTplqma~ayat~AN~G~~~~P~~i~~i~d~~G~~i~~~~~~~ 307 (494)
T 2bg1_A 246 GY------EIPEY------------GIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKP 307 (494)
T ss_dssp TC------CCSCC------------CCTTGGGTTTCCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCCCC
T ss_pred CC------CCCCC------------CCCCHHCCCCCCCCHHHHHHHHHHHHHCCEECCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 77------88766------------6221001687554206888999999729825254565458889998723457874
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEC---------CCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEE
Q ss_conf 2018999999999999987338846410---------4797357667240351268876688621799999742888099
Q gi|254781103|r 483 RIVLKKNTVKTMRSLLREGVTGGSGRRA---------FVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYI 553 (598)
Q Consensus 483 ~~vis~~~a~~l~~~l~~vv~~GTg~~a---------~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~ 553 (598)
++++|+++++.+++||+.||+.|||+.+ .++++++||||||++ +..++||+||. |+|+
T Consensus 308 ~~v~s~~~a~~~~~~L~~vv~~gt~~~~~~~~~~~~~~~~~~~vAGKTGTt~---------~~~DaWfvGyt----p~~~ 374 (494)
T 2bg1_A 308 VQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTN---------QDENMWLMLST----PRLT 374 (494)
T ss_dssp EECSCHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHCHHHHTSCCEEEEECCT---------TCSEEEEEEEC----SSEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEECCCC---------CCCEEEEEEEC----CCCE
T ss_conf 0147888999999999998722433000036544455558986268665899---------97237999747----9936
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999807888888874321467899999999999981
Q gi|254781103|r 554 VLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 554 v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
++|||...+.......+|+..|+|+|++||+.+....
T Consensus 375 ~~vWvG~d~~~~~~~~~G~~~a~~~~~~i~~~~~~~~ 411 (494)
T 2bg1_A 375 LGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNAIQQAS 411 (494)
T ss_dssp EEEEEECTTCCCCCTTTTTTHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999968999867666475413899999999998747
No 9
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A*
Probab=100.00 E-value=0 Score=457.55 Aligned_cols=295 Identities=17% Similarity=0.218 Sum_probs=243.3
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCC------CCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68867425552576777776442100113------234311122302320321112100147311134443232222233
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKKY------NAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY 324 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~------~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~ 324 (598)
..|..|+||||+++|+.+|+++.+.+... +...|++|+|||+||+||||++.|+|+++. +||+++
T Consensus 380 ~~Gl~I~TTLD~~lQ~~ae~al~~~l~~~~~~~~~~~~~gA~Vv~Dp~TGeIlAmvGg~~~~~~~---------fNra~~ 450 (751)
T 3fwm_A 380 LSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAG---------YNRAMQ 450 (751)
T ss_dssp SSSCEEEECCCHHHHHHHHHHHHHHHHHHHHHHTCSCCEEEEEEEETTTCBEEEEECSSSCSSCS---------SCHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCC---------CCCHHC
T ss_conf 68827982168899999999887404321223456666358999868999789996444234455---------550001
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCE-ECCCCCCCCCCCCC--CC---CCCCCCCC---CCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf 24566432012356544302403-20442133676322--21---01123454---323003999855036712354320
Q gi|254781103|r 325 GIFEMGSIFKVFTIAMGIDSGLF-TVKDLFDTRNPIKV--GK---HVIHDYHP---QNRILTIPEIFRYSSNIGAAQIAD 395 (598)
Q Consensus 325 ~~yePGStfKp~t~aaaLe~g~i-~~~~~~~~~~~~~~--~~---~~i~~~~~---~~g~it~~~al~~S~Nv~~~~i~~ 395 (598)
+.++|||+||||++++||++|.+ ++++.+.+ .++.+ ++ +..++++. ++|.+++++||++|||+++++++.
T Consensus 451 a~r~pGSt~KP~~y~aAL~~g~~~~~~t~~~D-~p~~~~~~~g~~~~p~n~d~~~~~~G~v~l~~AL~~S~N~~~v~l~~ 529 (751)
T 3fwm_A 451 ARRSIGSLAKPATYLTALSQPKIYRLNTWIAD-APIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGM 529 (751)
T ss_dssp CCEECGGGGHHHHHHHHHTCTTTCCTTCEEEC-SCCCEECSSSCEECCCCTTSCCCTTSEEEHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCEEECC-CCEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 34455554541789999973887445337426-76377579985317866776657876231433434023599999988
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEE
Q ss_conf 23333200110122257634468654211112233554410011468752130010022110011078230108999863
Q gi|254781103|r 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSR 475 (598)
Q Consensus 396 ~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~ 475 (598)
++|.+.+.+++++||+.......+ .++++| ++.+||||||++|++|||+|.+++||+|+++.
T Consensus 530 ~lG~~~~~~~~~k~Gi~~~~~~~~-----------------ps~~lG-~~~vTPlqmA~aYatiANgG~~~~P~~I~~I~ 591 (751)
T 3fwm_A 530 ALGLPAVTETWIKLGVPKDQLHPV-----------------PAMLLG-ALNLTPIEVAQAFQTIASGGNRAPLSALRSVI 591 (751)
T ss_dssp HHCHHHHHHHHHHHTCCGGGCCCS-----------------GGGGGT-CCEECHHHHHHHHHHHHTTSEECCCBSEEEEE
T ss_pred HHCHHHHHHHHHHCCCCCCCCCCC-----------------CHHHCC-CCCCCHHHHHHHHHHHHCCCEEECCEEEEEEE
T ss_conf 628089999999849985567898-----------------066538-86257889888999997498583568999999
Q ss_pred CCCCCC-------CCCCCCHHHHHHHHHHHHHHHCCCCEEE--CCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 078850-------3201899999999999998733884641--0479735766724035126887668862179999974
Q gi|254781103|r 476 EESEKV-------SRIVLKKNTVKTMRSLLREGVTGGSGRR--AFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFP 546 (598)
Q Consensus 476 ~~~~~~-------~~~vis~~~a~~l~~~l~~vv~~GTg~~--a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P 546 (598)
+.++++ .++++|+++++.++++|+.||++|||+. +..+++++||||||++ +..++||+||
T Consensus 592 d~dG~vi~~~~~~~~~vis~~tA~~v~~~M~~VV~~GTg~~~~~~~~~~~vAGKTGTT~---------~~rDaWFvG~-- 660 (751)
T 3fwm_A 592 AEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTN---------NNVDTWFAGI-- 660 (751)
T ss_dssp CTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTSTTHHHHHHSGGGCCEEEEEECG---------GGSEEEEEEE--
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCC---------CCCEEEEEEC--
T ss_conf 89998870368977636899999999999998755567300112389975999886379---------9705999985--
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 28880999999807888888874321467899999999999
Q gi|254781103|r 547 TTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSA 587 (598)
Q Consensus 547 ~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~ 587 (598)
+|+|+++|||++++.. ....+|++.|+|||+++|++..
T Consensus 661 --tp~~~~~VWvG~Ddn~-~~~~tG~~~Aapiw~~~m~~~~ 698 (751)
T 3fwm_A 661 --DGSTVTITWVGRDNNQ-PTKLYGASGAMSIYQRYLANQT 698 (751)
T ss_dssp --CSSEEEEEEEECTTCC-CCCCCTTHHHHHHHHHHHHSSC
T ss_pred --CCCEEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCC
T ss_conf --8996999999778999-7878445999999999996077
No 10
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=100.00 E-value=0 Score=450.90 Aligned_cols=306 Identities=19% Similarity=0.209 Sum_probs=250.0
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6886742555257677777644210011-323431112230232032111210014731113444323222223324566
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKK-YNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEM 329 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~-~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yeP 329 (598)
+.|..|+||||.++|+.+++++.+.... .....+++|+|||+||+||||++.++|+++ ..|++.++.+||
T Consensus 268 ~~G~~I~TTlD~~~Q~~~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlAmvgg~~~~~~---------~~~~~~~~~r~p 338 (669)
T 2olv_A 268 QSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDV---------VNRNQATDPHPT 338 (669)
T ss_dssp TBTCEEEESCCHHHHHHHHHHHHHCCCCSSTTEEEEEEEEETTTCBEEEEESSTTCCTT---------TSCCTTSSCEEC
T ss_pred HCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCHHC---------CCHHHHHCCCCC
T ss_conf 26858999522223235555544322035656416899997899918999627741000---------330545220456
Q ss_pred CCCCHHHHH-HHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEEC----CCCCCCH
Q ss_conf 432012356-5443024032044213367632221011234543-230039998550367123543202----3333200
Q gi|254781103|r 330 GSIFKVFTI-AMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADA----MGIQGHK 403 (598)
Q Consensus 330 GStfKp~t~-aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~----lg~~~~~ 403 (598)
|||||||++ +++++.+.+.+++.++|+..+..++++++||++. +|.+++++||++|||++|+++++. +|.+.+.
T Consensus 339 GStfKp~~~~aa~~e~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~G~vtl~~Al~~S~N~~av~l~~~lg~~~g~~~~~ 418 (669)
T 2olv_A 339 GSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALRQSFNIPALKAWQSVKQNAGNDAPK 418 (669)
T ss_dssp GGGGHHHHTHHHHHHHHCCCTTBEEECCSCEESSSCEECCSSCSCCCEEEHHHHHHTTCHHHHHHHHHHHHHHTCTTHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 64333124544442266432221134666543467654368887667548999987486289999999998876478999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC-
Q ss_conf 11012225763446865421111223355441001146875-2130010022110011078230108999863078850-
Q gi|254781103|r 404 EFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV- 481 (598)
Q Consensus 404 ~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~- 481 (598)
+++.+||+..+.+++ .++++|+| ..+||||||++|++|||+|.+++||+|+++.+.++++
T Consensus 419 ~~~~~~Gi~~~~~~~------------------~~~~lg~g~~~vtplqma~ayat~ANgG~~~~P~~I~~I~d~~G~~i 480 (669)
T 2olv_A 419 KFAAKLGLNYEGDIG------------------PSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETI 480 (669)
T ss_dssp HHHHTTTCCCSSCCC------------------HHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEE
T ss_pred HHHHHCCCCCCCCCC------------------CHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEE
T ss_conf 999980999523467------------------40103576332468899999999862993515679988887999986
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCEEEEEECCEEEECCCC-----CCCCCCCEEEEEEEEECCCC
Q ss_conf -----3201899999999999998733-884641047973576672403512688-----76688621799999742888
Q gi|254781103|r 482 -----SRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQKVIKK-----RYSDTLNFNSFLAVFPTTDP 550 (598)
Q Consensus 482 -----~~~vis~~~a~~l~~~l~~vv~-~GTg~~a~~~g~~vaGKTGTAq~~~~g-----~y~~~~~~~~FvG~~P~~dP 550 (598)
.++++|+++++.+++||+.|++ .|||+.+.++++++||||||||....+ ..+++..++||+||. |
T Consensus 481 ~~~~~~~~vis~~~a~~v~~~L~~vv~~~Gt~~~~~~~g~~vaGKTGTa~~~~~~~~~~~~~tn~~~DaWFvG~t----P 556 (669)
T 2olv_A 481 EYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGFT----P 556 (669)
T ss_dssp ECCCCEEECSCHHHHHHHHHHHGGGSSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEEC----S
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEC----C
T ss_conf 067765556799999999998541247887723215899842798016775776765455678886407999967----9
Q ss_pred EEEEEEEEECCCCCC--C---CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 099999980788888--8---874321467899999999999
Q gi|254781103|r 551 QYIVLSFMDSPKIKE--R---NQLTAGINVAPMVGNIIRRSA 587 (598)
Q Consensus 551 ~~~v~V~v~~p~~~~--~---~~~~Gg~~AaPi~~~I~~~~~ 587 (598)
+|+++|||..++... . .+.+|+..++|||+++|+.+.
T Consensus 557 ~~~~~VWvG~d~~~~~~~~~~~~~~g~~~~~~iw~~~m~~l~ 598 (669)
T 2olv_A 557 QYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKIS 598 (669)
T ss_dssp SEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHC
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 968999982488876676776676421789999999999975
No 11
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=100.00 E-value=0 Score=442.91 Aligned_cols=300 Identities=18% Similarity=0.206 Sum_probs=248.1
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCC----CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6886742555257677777644210011323----431112230232032111210014731113444323222223324
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKKYNA----ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGI 326 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a----~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~ 326 (598)
..|.+|+||||+++|..+|+++.+....... ..+++|+|||+||+|||||+.|+|+++. .||++++.
T Consensus 314 ~gG~~I~tTlD~~lQ~~ae~al~~~~~~~~~~~~~~~~a~Vv~Dp~TG~IlAmvGg~~~~~~~---------~n~a~~a~ 384 (720)
T 2jch_A 314 NGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQTGAILGFVGGRNYQENQ---------NNHAFDTK 384 (720)
T ss_dssp HSCCEEEECCCHHHHHHHHHHHHHHGGGGCCSSSCCEEEEEEEETTTCBEEEEECCSCTTTCC---------CCTTTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCC---------CCCCHHHH
T ss_conf 088079984156888999999999876520124120367999988999788984278500112---------32200244
Q ss_pred CCCCCCCHHHH-HHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEECCCCCCC--
Q ss_conf 56643201235-654430240320442133676322210112345-43230039998550367123543202333320--
Q gi|254781103|r 327 FEMGSIFKVFT-IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYH-PQNRILTIPEIFRYSSNIGAAQIADAMGIQGH-- 402 (598)
Q Consensus 327 yePGStfKp~t-~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~-~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~-- 402 (598)
++|||+||||+ +++|||+|.+++++.++|......+....+++. ..+|.+++++||++|||++++++...++...+
T Consensus 385 rqpGSs~Kp~~~yaaAle~G~~~~~t~~~d~~~~~~~~~~~~~~~~~~~G~vtl~~Al~~S~Nv~a~~~~~~~~~~g~~~ 464 (720)
T 2jch_A 385 RSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDV 464 (720)
T ss_dssp BCCGGGGHHHHTHHHHHHTTSCCTTCEEECSCCBCTTSCBCCBTTBCCCSEEEHHHHHHHTCSHHHHHHHHHHHHTTCCH
T ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 44013220257799998649999861773278333468853146666787332889988467745899999850111569
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC-
Q ss_conf 0110122257634468654211112233554410011468752130010022110011078230108999863078850-
Q gi|254781103|r 403 KEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV- 481 (598)
Q Consensus 403 ~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~- 481 (598)
..++++||+.. |.. ...++++|+++.+||||||++|++|||+|.+++||+|+++.+.++++
T Consensus 465 ~~~~~~~G~~~------~~~------------~~~slalGg~~~vTplqma~aYat~ANgG~~~~P~~I~~I~d~~G~vi 526 (720)
T 2jch_A 465 KGYMEKMGYEI------PEY------------GIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVV 526 (720)
T ss_dssp HHHHHHTTCCC------SCC------------CCTTGGGTTTCCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEE
T ss_pred HHHHHHCCCCC------CCC------------CCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEE
T ss_conf 99999739986------555------------653323412234200342213003114987815689998987999786
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHCCCCEEECC---------CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf ------320189999999999999873388464104---------79735766724035126887668862179999974
Q gi|254781103|r 482 ------SRIVLKKNTVKTMRSLLREGVTGGSGRRAF---------VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFP 546 (598)
Q Consensus 482 ------~~~vis~~~a~~l~~~l~~vv~~GTg~~a~---------~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P 546 (598)
.++++|+++++.+++||+.||+.|||+.++ ++++++||||||+| +..++||+||.
T Consensus 527 ~~~~~~~~~vis~~~A~~~~~~L~~vv~~gt~~~~~~~~~~~~~~~~~~~vAGKTGTt~---------~~~DaWFvGyt- 596 (720)
T 2jch_A 527 YEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTN---------QDENMWLMLST- 596 (720)
T ss_dssp EECCCCCEESSCHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHCHHHHTSCCEEEEEECT---------TSCEEEEEEEC-
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEECCCC---------CCCEEEEEEEC-
T ss_conf 02688755666989999999999999871654110146665465557986257704789---------85348999972-
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 28880999999807888888874321467899999999999981
Q gi|254781103|r 547 TTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 547 ~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
|+|+++|||.+++.......+|+..|+|+|++||+.+....
T Consensus 597 ---p~~~~~VWvG~d~~~~~~~~~G~~~a~~~~~~i~~~~~~~~ 637 (720)
T 2jch_A 597 ---PRLTLGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNAIQQAS 637 (720)
T ss_dssp ---SSEEEEEEEECTTCCCCCTTTTTTHHHHHHHHHHHHHHHTS
T ss_pred ---CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---99079999988999857676475425999999999998737
No 12
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A*
Probab=100.00 E-value=0 Score=371.75 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=197.6
Q ss_pred CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88674255525767777764421001132343111223023203211121001473111344432322222332456643
Q gi|254781103|r 252 NLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGS 331 (598)
Q Consensus 252 ~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGS 331 (598)
.+.+++++||.++|...+. +.+++..|++|+||++||++++ ||| ||+.+ .|||||
T Consensus 5 ~d~~~~~~l~~~~q~~~~~------~~~~~~~G~~v~~d~~~g~~~~------~n~------------~~~~~-~y~PGS 59 (255)
T 1xkz_A 5 TDYNYKKPLHNDYQILDKS------KIFGSNSGSFVMYSMKKDKYYI------YNE------------KESRK-RYSPNS 59 (255)
T ss_dssp ---CCCCCCCSEEEEECCH------HHHTTCEEEEEEEETTTTEEEE------ESH------------HHHTS-EECCGG
T ss_pred CCCCCCCCCCCHHHHHHHH------HHCCCCCEEEEEEECCCCCEEC------CCH------------HHHCC-CCCCCC
T ss_conf 6610101043178988778------6238884269999899997652------188------------99658-789954
Q ss_pred CCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCC
Q ss_conf 20123565443024032044213367632221011234543230039998550367123543202333320011012225
Q gi|254781103|r 332 IFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGL 411 (598)
Q Consensus 332 tfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~ 411 (598)
|||||++++|||+|++++++.+.|++.. .+.++|| +|.+|+++||++|||++|+++++++|.+.+.+++++|||
T Consensus 60 tfK~~~~~aaLe~G~i~~~~~~~~~~~~---~~~~~~~---~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~ 133 (255)
T 1xkz_A 60 TYKIYLAMFGLDRHIINDENSRMSWNHK---HYPFDAW---NKEQDLNTAMQNSVNWYFERISDQIPKNYTATQLKQLNY 133 (255)
T ss_dssp GGHHHHHHHHHHTTSSCSSCCCBCCCCC---CCSSGGG---SSCBCHHHHHHTTCHHHHHHHHTTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCEECCCCC---CCCCCCC---CCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 8999999999986998887512259988---7057877---899899999997674999998876172268999998088
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 76344686542111122335544100114687-52130010022110011078230108999863078850320189999
Q gi|254781103|r 412 LSKLETELPEIQAPSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNT 490 (598)
Q Consensus 412 g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~ 490 (598)
+++...+++ .++++ ++.+||||||.+|++|||+|. .+++++
T Consensus 134 g~~~~~~~~------------------~~~~~g~~~vTPlq~a~~~~~ian~g~--------------------~~s~~~ 175 (255)
T 1xkz_A 134 GNKNLGSYK------------------SYWMEDSLKISNLEQVIVFKNMMEQNN--------------------HFSKKA 175 (255)
T ss_dssp TTCCCTTSS------------------STTTTSSCCEEHHHHHHHHHHHHHCC---------------------CSCHHH
T ss_pred CCCCCCCCC------------------CHHHCCCCCCCHHHHHHHHHHHHCCCC--------------------CCCHHH
T ss_conf 988745575------------------444379753549999999999970996--------------------668889
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999987338846410479735766724035126887668862179999974288809999998078888888743
Q gi|254781103|r 491 VKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLT 570 (598)
Q Consensus 491 a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~ 570 (598)
++.++++|+.++. +|++|||||||||.. .+..++||+||+|.+||+|+++|+|++|+ +
T Consensus 176 ~~~~~~~m~~~~~---------~G~~vagKTGTa~~~------~~~~~~WFvGy~p~~~p~~~vav~i~~~~-------~ 233 (255)
T 1xkz_A 176 KNQLSSSLLIKKN---------EKYELYGKTGTGIVN------GKYNNGWFVGYVITNHDKYYFATHLSDGK-------P 233 (255)
T ss_dssp HHHHHHHHEEEEC---------SSEEEEEEEEEEEET------TEEEEEEEEEEEEESSCEEEEEEEEEESS-------C
T ss_pred HHHHHHHHHHHHH---------CCCHHHCCCCCEECC------CCCCCEEEEEEEECCCCEEEEEEEEECCC-------C
T ss_conf 9999999998875---------585000201221418------99651899999987998599999996799-------8
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 2146789999999999
Q gi|254781103|r 571 AGINVAPMVGNIIRRS 586 (598)
Q Consensus 571 Gg~~AaPi~~~I~~~~ 586 (598)
|+..|+||+++|++++
T Consensus 234 ~~~~Aapi~~~il~~l 249 (255)
T 1xkz_A 234 SGKNAELISEKILKEM 249 (255)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8727999999999985
No 13
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=100.00 E-value=0 Score=360.07 Aligned_cols=245 Identities=19% Similarity=0.264 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 77777644210011323431112230232032111210014731113444323222223324566432012356544302
Q gi|254781103|r 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 (598)
Q Consensus 265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~ 344 (598)
|.++++.+.+.+++++++ |++|+||++||++++ ||+ ||+.+ .|+|||||||+++++|||+
T Consensus 17 ~~i~~~~l~~~~~~~~~~-G~~vv~d~~tg~~~~------~n~------------n~~~~-~~~PGSTfK~~~~~aaLe~ 76 (262)
T 1nrf_A 17 TNVEYEDYSTFFDKFSAS-GGFVLFNSNRKKYTI------YNR------------KESTS-RFAPASTYKVFSALLALES 76 (262)
T ss_dssp CEEEECCCHHHHHTTTEE-EEEEEEETTTTEEEE------ECH------------HHHHS-CBCCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEEECCCCCEEE------ECH------------HHHCC-CCCCCCHHHHHHHHHHHHC
T ss_conf 036899999999973885-589999899997863------198------------99757-7899752899999999985
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 40320442133676322210112345432300399985503671235432023333200110122257634468654211
Q gi|254781103|r 345 GLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQA 424 (598)
Q Consensus 345 g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~ 424 (598)
|++++++.+.|.+.... .++..+|.+++++||++|||++|++++++||.+++.+++++|||+++. +..|
T Consensus 77 g~~~~~~~~~~~~~~~~------~~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~-~~~p---- 145 (262)
T 1nrf_A 77 GIITKNDSHMTWDGTQY------PYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNED-FSVP---- 145 (262)
T ss_dssp TSSCSSCCCBCCCCCCC------SSTTTSSCBCHHHHHHHTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCC-CSCT----
T ss_pred CCCCCCCEEECCCCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCC----
T ss_conf 99999874565998503------678889997999999975709885232425857899999983999988-8986----
Q ss_pred CCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 11223355441001146875-21300100221100110782301089998630788503201899999999999998733
Q gi|254781103|r 425 PSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT 503 (598)
Q Consensus 425 g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~ 503 (598)
..+++|| +.+||+|||++|++|||+|..++ +++.+.++++|+
T Consensus 146 -------------~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~--------------------p~~~~~~~~~~~---- 188 (262)
T 1nrf_A 146 -------------ADYWLDGSLQISPLEQVNILKKFYDNEFDFK--------------------QSNIETVKDSIR---- 188 (262)
T ss_dssp -------------TTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC--------------------HHHHHHHHHHHE----
T ss_pred -------------CHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------------------HHHHHHHHHHHH----
T ss_conf -------------3787479755239999999999954688778--------------------899999987876----
Q ss_pred CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88464104797357667240351268876688621799999742888099999980788888887432146789999999
Q gi|254781103|r 504 GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNII 583 (598)
Q Consensus 504 ~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~ 583 (598)
.+..+++.|||||||||. ..+.+++||+||+|.+||+|+++|.|++|+ .+|+.+|+||+++|+
T Consensus 189 -----~~~~~~~~vagKTGTa~~------~~~~~~~WfvGy~p~~~p~~~~~v~ie~~~------~~~~~~A~pI~~~il 251 (262)
T 1nrf_A 189 -----LEESNGRVLSGKTGTSVI------NGELHAGWFIGYVETADNTFFFAVHIQGEK------RAAGSSAAEIALSIL 251 (262)
T ss_dssp -----EEEETTEEEEEEEEEEEC------SSSCEEEEEEEEEECSSCEEEEEEEEEESC------SCHHHHHHHHHHHHH
T ss_pred -----HHHHHCCCCCCCCCCCCC------CCCCCEEEEEEEEECCCCEEEEEEEEECCC------CCCCHHHHHHHHHHH
T ss_conf -----654412335664025436------899862899999987998599999998899------875078999999999
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 999998189985569
Q gi|254781103|r 584 RRSASMLGVKPVFLK 598 (598)
Q Consensus 584 ~~~~~~~~i~P~~~~ 598 (598)
..||+.|...|
T Consensus 252 ----~~lg~~P~~~~ 262 (262)
T 1nrf_A 252 ----DKKGIYPSVSR 262 (262)
T ss_dssp ----HHTTSCC----
T ss_pred ----HHCCCCCCCCC
T ss_conf ----98599999999
No 14
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=100.00 E-value=0 Score=354.61 Aligned_cols=242 Identities=12% Similarity=0.162 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 25767777764421001132343111223023203211121001473111344432322222332456643201235654
Q gi|254781103|r 261 DLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAM 340 (598)
Q Consensus 261 D~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aa 340 (598)
|...|.++++.|.+....+++..|++|++|++||+|++ ||+ +|+. ..||||||||||++++
T Consensus 1 d~~~~~~~~~~~~~~~~~f~~~~G~~v~~d~~tg~~~~------~n~------------~~~~-~~y~PGStfK~~t~~a 61 (246)
T 2iwb_A 1 DKYETNVSYKKLNQLAPYFKGFDGSFVLYNEREQAYSI------YNE------------PESK-QRYSPNSTYKIYLALM 61 (246)
T ss_dssp CBCCCCCCEEECGGGGGGGTTSEEEEEEEETTTTEEEE------ESH------------HHHT-BCBCCGGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEE------ECH------------HHHC-CCCCCCCHHHHHHHHH
T ss_conf 90277774999999998717873469999789996760------588------------8966-8779963699999999
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 43024032044213367632221011234543230039998550367123543202333320011012225763446865
Q gi|254781103|r 341 GIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELP 420 (598)
Q Consensus 341 aLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp 420 (598)
|||+|++++++.++|++..... .+.++|.+++++||++|||++|+++++++|.+++.+++++|||+++ +++
T Consensus 62 aLe~g~~~~~~~~~~~~~~~~~------~~~~~g~~~l~~Al~~S~N~~~~~la~~lG~~~~~~~~~~~G~g~~---~~~ 132 (246)
T 2iwb_A 62 AFDQNLLSLNHTEQQWDKHQYP------FKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDEVKSYLDLIEYGNE---EIS 132 (246)
T ss_dssp HHHTTSSBTTBCCBCCCCCCCS------SGGGSSCBCHHHHHHTTCHHHHHHHHTTSCHHHHHHHHHHHTCTTC---CCC
T ss_pred HHHCCCCCCCCCCCCCCCCCCC------CCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCC---CCC
T ss_conf 9984997885434169986617------8988997077884224562999999987286078999998289999---889
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 421111223355441001146875-2130010022110011078230108999863078850320189999999999999
Q gi|254781103|r 421 EIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499 (598)
Q Consensus 421 ~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~ 499 (598)
++ ..++||| +++||+|||++|++|||+|.. +++++++.++++|+
T Consensus 133 ~~---------------~~~~~~g~~~iTPlqma~~~~~ian~g~~--------------------~~p~~~~~~~~~~~ 177 (246)
T 2iwb_A 133 GN---------------ENYWNESSLKISAIEQVNLLKNMKQHNMH--------------------FDNKAIEKVENSMT 177 (246)
T ss_dssp SC---------------SSTTSSSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTE
T ss_pred CC---------------CCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------------------CCCHHHHHHHHHHH
T ss_conf 87---------------64222687525699999999999838967--------------------88325567777777
Q ss_pred HHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 87338846410479735766724035126887668862179999974288809999998078888888743214678999
Q gi|254781103|r 500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV 579 (598)
Q Consensus 500 ~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~ 579 (598)
.+ ..+++.++|||||++. .+...++||+||+|.+||+|+++|+|++|+ ..|+..|+||+
T Consensus 178 ~~---------~~~~~~~~~ktgTg~~------~~~~~~aWFvGf~p~~~p~~~~~v~v~~~~------~~~~~~A~pi~ 236 (246)
T 2iwb_A 178 LK---------QKDTYKYVGKTGTGIV------NHKEANGWFVGYVETKDNTYYFATHLKGED------NANGEKAQQIS 236 (246)
T ss_dssp EE---------ECSSEEEEEEEEEEEE------TTEEEEEEEEEEEEESSCEEEEEEEEECSS------CBCHHHHHHHH
T ss_pred HH---------HHHHHHHHHCCCCCCC------CCCCCCEEEEEEEECCCCEEEEEEEEECCC------CCCCHHHHHHH
T ss_conf 76---------5423443211010446------898878899999988999599999997899------88747899999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781103|r 580 GNIIRRS 586 (598)
Q Consensus 580 ~~I~~~~ 586 (598)
++|++.+
T Consensus 237 ~~Il~~l 243 (246)
T 2iwb_A 237 ERILKEM 243 (246)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
T ss_conf 9999971
No 15
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A*
Probab=100.00 E-value=0 Score=345.55 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=180.3
Q ss_pred HHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCC
Q ss_conf 21001132343111223023203211121001473111344432322222332456643201235654430240320442
Q gi|254781103|r 273 VENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDL 352 (598)
Q Consensus 273 ~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~ 352 (598)
.+..+.++++ |++|+||++||++++|+ ||| ||+.+ .|+||||||||++++|||+|++++++.
T Consensus 11 ~~~f~~~~~~-G~~vv~D~~tg~~~a~~----~n~------------~~a~~-~y~PGSTfK~~~~~aaLe~G~i~~~~~ 72 (254)
T 1k38_A 11 RKFFSEFQAK-GTIVVADERQADRAMLV----FDP------------VRSKK-RYSPASTFKIPHTLFALDAGAVRDEFQ 72 (254)
T ss_dssp HHHHHHTTCC-EEEEEEECSSSSCCCEE----ESH------------HHHTC-CBCCGGGGHHHHHHHHHHHTSCCSTTC
T ss_pred HHHHHHCCCC-EEEEEEECCCCCEEEEE----CCH------------HHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9887651883-89999989998578861----498------------99668-889972899999999998498543211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13367632221011234543230039998550367123543202333320011012225763446865421111223355
Q gi|254781103|r 353 FDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWK 432 (598)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~ 432 (598)
+.|.+... +..++ ++|.+|+++||++|||++|+++++++|.+++.+++++||||... ++++
T Consensus 73 ~~~~~~~~---~~~~~---~~g~~tl~~Al~~S~N~~f~~la~~lG~~~~~~~~~~~G~G~~~---~~~~---------- 133 (254)
T 1k38_A 73 IFRWDGVN---RGFAG---HNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNAD---PSTS---------- 133 (254)
T ss_dssp CBCCCSCC---CSCTT---TSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCC---CCC-----------
T ss_pred CCCCCCCC---CCCCC---CCCCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCC----------
T ss_conf 34689876---78888---89997999999973939999999981908899999985999998---8765----------
Q ss_pred CCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 441001146875-2130010022110011078230108999863078850320189999999999999873388464104
Q gi|254781103|r 433 RIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAF 511 (598)
Q Consensus 433 ~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~ 511 (598)
...+++|| +.+||+|||++|++|||+|.. +++++.+.++++|+.+ .
T Consensus 134 ----~~~~~~~g~~~itPlq~a~~~~~ian~g~~--------------------~~~~~~~~~~~~~~~~---------~ 180 (254)
T 1k38_A 134 ----NGDYWIEGSLAISAQEQIAFLRKLYRNELP--------------------FRVEHQRLVKDLMIVE---------A 180 (254)
T ss_dssp -----CCTTTTSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTEEE---------E
T ss_pred ----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEE--------------------CCHHHHHHHHHHHHHH---------H
T ss_conf ----344001787437599999999999769940--------------------5800679999999883---------4
Q ss_pred CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79735766724035126887668862179999974288809999998078888888743214678999999999999818
Q gi|254781103|r 512 VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLG 591 (598)
Q Consensus 512 ~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~ 591 (598)
.+|+++||||||||. ++||+||+|.+||+|+++|++++|+ +..|+..|+||+++|++ .++
T Consensus 181 ~~g~~vaGKTGTa~~-----------~~WFvG~~p~~~p~~~~av~i~~~~-----~~~~~~~a~~i~~~il~----~l~ 240 (254)
T 1k38_A 181 GRNWILRAKTGWEGR-----------MGWWVGWVEWPTGSVFFALNIDTPN-----RMDDLFKREAIVRAILR----SIE 240 (254)
T ss_dssp ETTEEEEEEEEESSS-----------EEEEEEEEEETTEEEEEEEEEECTT-----GGGGTHHHHHHHHHHHH----HTT
T ss_pred HCCCEEEEEECCCCC-----------CEEEEEEEECCCCEEEEEEEEECCC-----CCCCHHHHHHHHHHHHH----HCC
T ss_conf 259757776368986-----------7689999986998699999997799-----97728999999999999----848
Q ss_pred CCC
Q ss_conf 998
Q gi|254781103|r 592 VKP 594 (598)
Q Consensus 592 i~P 594 (598)
+.|
T Consensus 241 ~lp 243 (254)
T 1k38_A 241 ALP 243 (254)
T ss_dssp SSC
T ss_pred CCC
T ss_conf 999
No 16
>1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ...
Probab=100.00 E-value=0 Score=346.19 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=181.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCC
Q ss_conf 34311122302320321112100147311134443232222233245664320123565443024032044213367632
Q gi|254781103|r 281 AESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360 (598)
Q Consensus 281 a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~ 360 (598)
+..|++|+|||+||++++ +| .||+.+ .||||||||||++++|||+|++++++.+.|.+...
T Consensus 16 ~~~G~~v~~d~~tg~~~~------~~------------~~ra~~-~~~PGStfKp~~~~aaLe~G~i~~~~~~~~~~g~~ 76 (246)
T 1k55_A 16 AVNGVFVLCKSSSKSCAT------ND------------LARASK-EYLPASTFKIPNAIIGLETGVIKNEHQVFKWDGKP 76 (246)
T ss_dssp TCCEEEEEEESSTTSEEE------SC------------HHHHTC-CBCCGGGGHHHHHHHHHHTTSSCSTTCEECCCSCC
T ss_pred CCCEEEEEEECCCCCEEE------EC------------HHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 783589999899996886------37------------667626-87997438999999999808999744553689956
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 22101123454323003999855036712354320233332001101222576344686542111122335544100114
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTIS 440 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~ 440 (598)
+. ++.++|.+|+++||++|||++|+++++++|++.+.+++++||||++ ++|++.. .. .
T Consensus 77 ---~~---~~~~~g~~tl~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~---~~~~~~~----~~---------~ 134 (246)
T 1k55_A 77 ---RA---MKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQ---NISGGID----KF---------W 134 (246)
T ss_dssp ---CS---SGGGSSCEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTC---CCCSCTT----TT---------T
T ss_pred ---CC---CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCC---CCCCCCC----CH---------H
T ss_conf ---67---6777999799999997482999999998398999999998399988---7888765----34---------4
Q ss_pred CCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEE
Q ss_conf 68752130010022110011078230108999863078850320189999999999999873388464104797357667
Q gi|254781103|r 441 FGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGK 520 (598)
Q Consensus 441 ~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGK 520 (598)
.++++.+||+|||++|++|||+|.. ++|++++.++++|+.++ .+++.++||
T Consensus 135 ~~g~~~iTPlq~a~~~~~iangg~~--------------------~sp~~~~~~~~~m~~~~---------~~g~~vagK 185 (246)
T 1k55_A 135 LEGQLRISAVNQVEFLESLYLNKLS--------------------ASKENQLIVKEALVTEA---------APEYLVHSK 185 (246)
T ss_dssp TTSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTEEEE---------ETTEEEEEE
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCC--------------------CCHHHHHHHHHHHHHHH---------HHHHHCCCE
T ss_conf 4698655699999999999729987--------------------78899999999999877---------664221444
Q ss_pred CCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2403512688766886217999997428880999999807888888874321467899999999999981899
Q gi|254781103|r 521 TGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVK 593 (598)
Q Consensus 521 TGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~ 593 (598)
|||||.. ..++..++|||||+|.+||+|+++|++++|+. .+ +|++++|+++++..|||.
T Consensus 186 TGTa~~g----~~~~~~~aWFvGf~p~~~p~~~~av~i~~~~~------~~----~~~a~~i~~~il~~~g~~ 244 (246)
T 1k55_A 186 TGFSGVG----TESNPGVAWWVGWVEKETEVYFFAFNMDIDNE------SK----LPLRKSIPTKIMESEGII 244 (246)
T ss_dssp EEECCCC----CSSSCEEEEEEEEEEETTEEEEEEEEEEESCG------GG----TTHHHHHHHHHHHHTTCC
T ss_pred EEEEECC----CCCCCCCEEEEEEEECCCCEEEEEEEEECCCC------CC----CHHHHHHHHHHHHHCCCC
T ss_conf 5122205----78998538999999879985999999977998------87----588999999999972651
No 17
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A*
Probab=100.00 E-value=0 Score=328.08 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=179.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCC
Q ss_conf 23431112230232032111210014731113444323222223324566432012356544302403204421336763
Q gi|254781103|r 280 NAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPI 359 (598)
Q Consensus 280 ~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~ 359 (598)
+...|++|++|+++|+++++ ||+ +++ ...||||||||||++++|||+|++++++.++|++..
T Consensus 13 ~~~~g~~v~~d~~~~~~~~~-----~n~------------~~~-~~~y~PGSTfK~~~~~aaLe~g~i~~~~~~~~~~~~ 74 (251)
T 3isg_A 13 EGTEGCFLLYDASTNAEIAQ-----FNK------------AKC-ATQMAPDSTFKIALSLMAFDAEIIDQKTIFKWDKTP 74 (251)
T ss_dssp TTEEEEEEEEETTTCCEEEE-----ECH------------HHH-TCCBCCGGGHHHHHHHHHHHTTSCCTTCCBCCCSSC
T ss_pred CCCCCEEEEEECCCCCEECC-----CCH------------HHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 88652499997898985003-----086------------774-677799535999999999985998899557732656
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 22210112345432300399985503671235432023333200110122257634468654211112233554410011
Q gi|254781103|r 360 KVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTI 439 (598)
Q Consensus 360 ~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~ 439 (598)
+.++|| .+.+++++||++|||++|++++.++|.+.+.+++++|||++.+..+.+.+..+. ..
T Consensus 75 ----~~~~~~---~~~~tl~~Al~~S~N~~~~~la~~lG~~~~~~~~~~~G~g~~~~~~~~~~~~~~-----------~~ 136 (251)
T 3isg_A 75 ----KGMEIW---NSNHTPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNGL-----------TE 136 (251)
T ss_dssp ----CSSGGG---SSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCCCCCC--CCCHH-----------HH
T ss_pred ----CCCCCC---CCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC-----------CC
T ss_conf ----676677---998298999987157999999876383137899997699998888864222355-----------66
Q ss_pred CCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEE
Q ss_conf 4687-521300100221100110782301089998630788503201899999999999998733884641047973576
Q gi|254781103|r 440 SFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVG 518 (598)
Q Consensus 440 ~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~va 518 (598)
.+++ ++.+||+||+++|+++||+|.. ++++..+.+.+.|..++.. +|+.||
T Consensus 137 ~~~~g~~~iTPlq~a~~~~~ian~~~~--------------------~~~~~~~~i~~~m~~~~~~--------~g~~va 188 (251)
T 3isg_A 137 AWLESSLKISPEEQIQFLRKIINHNLP--------------------VKNSAIENTIENMYLQDLD--------NSTKLY 188 (251)
T ss_dssp TTSSSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTEEEECT--------TSCEEE
T ss_pred CEECCCEEECHHHHHHHHHHHHCCCCC--------------------CCHHHHHHHHHHHHHHEEC--------CCCCCE
T ss_conf 311476014599999999999839931--------------------3858999999997562332--------664213
Q ss_pred EECCEEEECCCCCCCCCCCEEEEEEEEECCCCEE-EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6724035126887668862179999974288809-9999980788888887432146789999999999998189
Q gi|254781103|r 519 GKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQY-IVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592 (598)
Q Consensus 519 GKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~-~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i 592 (598)
|||||||... ++.+++||+||+|.++|++ +++|.++++. .++..|+|++++|+.++++.|+|
T Consensus 189 GKTGTa~~~~-----~~~~~~WFvGy~p~~~~~~~~~~v~~~~~~-------~~~~~~~~~a~~i~~~il~~l~i 251 (251)
T 3isg_A 189 GKTGAGFTAN-----RTLQNGWFEGFIISKSGHKYVFVSALTGNL-------GSNLTSSIKAKKNAITILNTLNL 251 (251)
T ss_dssp EEEEEEECTT-----SSCEEEEEEEEEECTTCCEEEEEEEEEECC-------TTSCCHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCC-----CCCCEEEEEEEEECCCCCEEEEEEEEECCC-------CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6637754789-----998539999998748998899999981797-------77623479999999999987579
No 18
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=100.00 E-value=0 Score=321.62 Aligned_cols=224 Identities=13% Similarity=0.135 Sum_probs=177.9
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf 31112230232032111210014731113444323222223324566432012356544302403204421336763222
Q gi|254781103|r 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVG 362 (598)
Q Consensus 283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~ 362 (598)
.|++|++|+++|++++ || .|||.+ .|+|||||||+++++|||+|++++++.+.|.+..
T Consensus 41 ~G~~vi~d~~~~~~~~------~~------------~nRA~~-~~~PgSTFKi~~a~aaLe~G~i~~~~~~~~~~g~--- 98 (265)
T 3hbr_A 41 QGVVVLWNENKQQGFT------NN------------LKRANQ-AFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQ--- 98 (265)
T ss_dssp CEEEEEEETTTTEEEE------SC------------HHHHTC-EECCGGGGHHHHHHHHHHTTSSCCTTCCBCCCSC---
T ss_pred CEEEEEEECCCCCEEE------EC------------HHHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCC---
T ss_conf 5689999889995775------06------------656527-8899733899999999986985997704418995---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 10112345432300399985503671235432023333200110122257634468654211112233554410011468
Q gi|254781103|r 363 KHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFG 442 (598)
Q Consensus 363 ~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~G 442 (598)
.+.+++| ++.+|+++||++|||++|+++++++|.+++.+++++||||.. ++|++.. .-| +
T Consensus 99 ~~~~~~~---~~~~tl~~Al~~S~N~~f~~l~~~iG~~~~~~~~~~~G~G~~---~~~~~~~----~~w----------~ 158 (265)
T 3hbr_A 99 TRDIATW---NRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNE---DISGNVD----SFW----------L 158 (265)
T ss_dssp CCSSGGG---SSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHHTCTTC---CC-CCTT----THH----------H
T ss_pred CCCCCCC---CCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCC---CCCCCCC----CCC----------C
T ss_conf 6558875---899899999997080999999777293778999998699998---8898866----440----------3
Q ss_pred C-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEC
Q ss_conf 7-521300100221100110782301089998630788503201899999999999998733884641047973576672
Q gi|254781103|r 443 H-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKT 521 (598)
Q Consensus 443 q-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKT 521 (598)
+ ++.+||+|||.+|++|+|+|. .+++++.+.++++|+.. ..+||.+||||
T Consensus 159 ~g~l~iTPlq~a~~~~~ian~~~--------------------~~s~~~~~~v~~~m~~~---------~~~g~~vaGKT 209 (265)
T 3hbr_A 159 DGGIRISATEQISFLRKLYHNKL--------------------HVSERSQRIVKQAMLTE---------ANGDYIIRAKT 209 (265)
T ss_dssp HSSCCEEHHHHHHHHHHHHTTCS--------------------SSCHHHHHHHHHHTEEE---------ECSSCEEEEEE
T ss_pred CCCEEECHHHHHHHHHHHHHCCC--------------------CCCHHHHHHHHHHHHHH---------HCCCEEEEEEC
T ss_conf 79700108999999999983996--------------------88889999999998863---------31580578510
Q ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4035126887668862179999974288809999998078888888743214678999999999999818998
Q gi|254781103|r 522 GTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594 (598)
Q Consensus 522 GTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P 594 (598)
||||. .+..++|||||+|.++|+|+++|.+++|+ ..|+..|+||+++| +.-++|.|
T Consensus 210 GTa~~-------~~~~~~WfvG~~~~~~~~~~~av~i~~~~------~~~~~~a~~i~~~i----l~~~~i~P 265 (265)
T 3hbr_A 210 GYSTR-------IEPKIGWWVGWVELDDNVWFFAMNMDMPT------SDGLGLRQAITKEV----LKQEKIIP 265 (265)
T ss_dssp EEECS-------SSSCEEEEEEEEECSSCEEEEEEEEECSS------GGGTTHHHHHHHHH----HHHTTSCC
T ss_pred CCCCC-------CCCCCEEEEEEEECCCCEEEEEEEEECCC------CCCHHHHHHHHHHH----HHHCCCCC
T ss_conf 35546-------89986899999987998699999975699------88759999999999----99859998
No 19
>3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A*
Probab=100.00 E-value=0 Score=320.93 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 77777644210011323431112230232032111210014731113444323222223324566432012356544302
Q gi|254781103|r 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 (598)
Q Consensus 265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~ 344 (598)
++..|+++...++..++ .|++|++|++||+++++. +|||.+ .|+|||||||+++++|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~-~G~~v~~d~~~~~~~~~~------------------~~ra~~-~~~PGSTfK~~~~~aaLe~ 63 (244)
T 3g4p_A 4 SQQHEKAIKSYFDEAQT-QGVIIIKEGKNLSTYGNA------------------LARANK-EYVPASTFKMLNALIGLEN 63 (244)
T ss_dssp HHHHHHHHHHHHHHTTC-CEEEEEEETTEEEEEESC------------------GGGGGC-CBCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCC-CEEEEEEECCCCCEECCC------------------HHHHCC-CCCCCCHHHHHHHHHHHHC
T ss_conf 58999999998601378-638999978988664354------------------001137-8799647999999999986
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 40320442133676322210112345432300399985503671235432023333200110122257634468654211
Q gi|254781103|r 345 GLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQA 424 (598)
Q Consensus 345 g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~ 424 (598)
|.++|++.++|++... ...+ ++|.+++++||++|||++|++++.++|++.+.+++++|||+.+ ++|+..
T Consensus 64 G~~~~~~~~~~~g~~~----~~~~---~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~~~~---~~~~~~- 132 (244)
T 3g4p_A 64 HKATTNEIFKWDGKKR----TYPM---WEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNT---NIGTQV- 132 (244)
T ss_dssp TSCCSSCCBCCCSCCC----SSGG---GSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHHTCTTC---CCTTCT-
T ss_pred CCCCCCCCCCCCCCCC----CCCC---CCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCC---CCCCCC-
T ss_conf 9999742234789650----5788---7888699999996385999999987083878999997899998---898655-
Q ss_pred CCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 1122335544100114687-521300100221100110782301089998630788503201899999999999998733
Q gi|254781103|r 425 PSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT 503 (598)
Q Consensus 425 g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~ 503 (598)
..++++ ++.+||+||+++|++|||+|.. +++++++.++++|+.++
T Consensus 133 -------------~~~~~~g~~~iTp~q~a~~~~~lan~g~~--------------------~~~~~~~~v~~~m~~~~- 178 (244)
T 3g4p_A 133 -------------DNFWLVGPLKITPVQEVNFADDLAHNRLP--------------------FKLETQEEVKKMLLIKE- 178 (244)
T ss_dssp -------------TTHHHHSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHTTEEEE-
T ss_pred -------------CCCCCCCCCEECHHHHHHHHHHHHCCCCC--------------------CCHHHHHHHHHHHHHHH-
T ss_conf -------------56110787018699999999999709805--------------------58558999999999755-
Q ss_pred CCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8846410479735766724035126887668862179999974288-809999998078888888743214678999999
Q gi|254781103|r 504 GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNI 582 (598)
Q Consensus 504 ~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I 582 (598)
.+|+++||||||+|. .+.+++||+||+|..| |.|+++|+++.++ ..++..|+||+++|
T Consensus 179 --------~~g~~~aGKTGT~~~-------~~~~~~WFvG~~~~~~~~~~~~~v~~~~~~------~~~~~~a~~I~~~i 237 (244)
T 3g4p_A 179 --------VNGSKIYAKSGWGMG-------VTPQVGWLTGWVEQANGKKIPFSLNLEMKE------GMSGSIRNEITYKS 237 (244)
T ss_dssp --------ETTEEEEEEEEEECS-------SSSEEEEEEEEEECTTSCEEEEEEEEEECT------TCCTHHHHHHHHHH
T ss_pred --------HHCEEEEEEEECCCC-------CCCCCEEEEEEEECCCCCEEEEEEEEECCC------CCCHHHHHHHHHHH
T ss_conf --------432223785871126-------899878999976869898899999963798------66559999999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998189
Q gi|254781103|r 583 IRRSASMLGV 592 (598)
Q Consensus 583 ~~~~~~~~~i 592 (598)
+.-|||
T Consensus 238 ----l~~lg~ 243 (244)
T 3g4p_A 238 ----LENLGI 243 (244)
T ss_dssp ----HHHTTC
T ss_pred ----HHHCCC
T ss_conf ----998289
No 20
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}
Probab=100.00 E-value=9.3e-36 Score=244.69 Aligned_cols=291 Identities=10% Similarity=0.007 Sum_probs=207.9
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 25552576777776442100113234311122302320321112100147311134443232222233245664320123
Q gi|254781103|r 257 RLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVF 336 (598)
Q Consensus 257 ~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~ 336 (598)
+|+.|. ||+-+++.+.+ .+. +|++||+|++||+|+|+ ||+ ..|+||||||++
T Consensus 1 ~~~~~~-l~~~~~~~~~~----~~~-~~~~~V~D~~tG~~la~------n~d----------------~~~~pgSt~K~~ 52 (318)
T 2wuq_A 1 VLNSES-LLRELRDALHE----GGL-TGSFLVRDLYTGEELGI------DPD----------------TELPTASLVKLP 52 (318)
T ss_dssp --CCHH-HHHHHHHHHHH----TTE-EEEEEEEETTTCCEEEE------STT----------------CCEECGGGGHHH
T ss_pred CCCHHH-HHHHHHHHHHH----CCC-EEEEEEEECCCCCEEEE------CCC----------------CEECCHHHHHHH
T ss_conf 978799-99999999985----398-49999999989988998------899----------------737379799999
Q ss_pred HHHHHHH---CCCEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCCCCCCHHHCCC
Q ss_conf 5654430---240320442133676-3222101123454323003----9998550367123543202333320011012
Q gi|254781103|r 337 TIAMGID---SGLFTVKDLFDTRNP-IKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMGIQGHKEFLYR 408 (598)
Q Consensus 337 t~aaaLe---~g~i~~~~~~~~~~~-~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~ 408 (598)
|++++|+ +|.+++++.++|... +...+....++...++.++ +..++..|+|+++..++..+|.+.+.+++++
T Consensus 53 ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~S~n~a~~~l~~~~g~~~~~~~~~~ 132 (318)
T 2wuq_A 53 LALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSRFRHPARVAVDDLLYLSTSVSDGTASDALFEITPPAQVEQMVRE 132 (318)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCGGGGCSSCEEEEHHHHHHHHHHSCCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999987654997875456640353137997401357888740399999999982772266778875299987547887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEEC---------CCC
Q ss_conf 22576344686542111122335544100114687521300100221100110782301089998630---------788
Q gi|254781103|r 409 LGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSRE---------ESE 479 (598)
Q Consensus 409 fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~---------~~~ 479 (598)
||++......++.+.....+..|..........+++...+|.++..++++++++|....|+.+.+... ...
T Consensus 133 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 212 (318)
T 2wuq_A 133 WGFRDLTVRHSMRELSETPAERFESADAHLAHALAISAGTSGRGHRVPQLDVARANTGTARAFVDLLEALWAPVLTGPRP 212 (318)
T ss_dssp TTCCSCCCCCCTTC------------------------------CCSGGGCTTTSCEECHHHHHHHHHHHHGGGCCCC--
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 08876446566654566655555520245666423656576789999999852883034899999997502565455665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEC-CCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE
Q ss_conf 5032018999999999999987338846410-479735766724035126887668862179999974288809999998
Q gi|254781103|r 480 KVSRIVLKKNTVKTMRSLLREGVTGGSGRRA-FVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFM 558 (598)
Q Consensus 480 ~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a-~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v 558 (598)
....++++++++..++++|..++..|++.++ ...|+.|||||||++. ..+.+||+ .+.++|+|+++|++
T Consensus 213 ~~~~~~~~~~~~~~l~~~m~~~~~~g~~~~~~~~~g~~vagKTGT~~~--------~~~~~~~~--~~~d~~~~~v~V~~ 282 (318)
T 2wuq_A 213 GRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWSSKTGTLLN--------LRHEVGVV--EHADGQVFAVAVLT 282 (318)
T ss_dssp -----CCCHHHHHHHHHHHHTCCCCSSSHHHHCBTTEEEEEEEEEETT--------EEEEEEEE--EETTSCEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC--------CCEEEEEE--ECCCCCEEEEEEEE
T ss_conf 433456799999999999873464887201347899889998025778--------31669999--96898949999998
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0788888887432146789999999999
Q gi|254781103|r 559 DSPKIKERNQLTAGINVAPMVGNIIRRS 586 (598)
Q Consensus 559 ~~p~~~~~~~~~Gg~~AaPi~~~I~~~~ 586 (598)
+++..... ...+....++|+|.+.+.+
T Consensus 283 ~~~~~~~~-~~~~~~~~~~iaR~~~d~l 309 (318)
T 2wuq_A 283 ESQVPADS-QPGAEALMAQVARRLRDRL 309 (318)
T ss_dssp EESSCCSC-CHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 06987531-1458999999999999999
No 21
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis}
Probab=99.65 E-value=1.4e-15 Score=116.40 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=150.7
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEE
Q ss_conf 644210011323431112230232032111210014731113444323222223324566432012356544302-4032
Q gi|254781103|r 270 QELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS-GLFT 348 (598)
Q Consensus 270 ~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~-g~i~ 348 (598)
++|.+..++++++-| +.|+|.+||++++. |+ ...|+|+||+|+++++++|+. +...
T Consensus 3 ~~l~~~~~~~~~~~g-v~v~dl~tG~~~~~------n~----------------~~~~~~AS~~Kl~~~~~~l~~~~~~~ 59 (260)
T 3lez_A 3 EDLKKLEEEFDVRLG-VYAIDTGADKEISY------RE----------------NERFAYTSTFKPLAVGAVLQTKSDEE 59 (260)
T ss_dssp HHHHHHHHHHTCEEE-EEEEETTTTEEEEE------ST----------------TSEEECGGGGHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHCCCEEE-EEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 799999997498699-99998999988888------89----------------97073488999999999998566688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 04421336763222101123454323003----9998550367123543202333-320011012225763446865421
Q gi|254781103|r 349 VKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLETELPEIQ 423 (598)
Q Consensus 349 ~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~idlp~e~ 423 (598)
+++.+.........+........ +..++ +..++..|.|+....|++.+|. +....+++++|+.. +.++...
T Consensus 60 ld~~~~~~~~~~~~~~~~~~~~~-g~~~t~~dll~~mi~~SdN~Aa~~L~~~~g~~~~~~~~~~~~g~~~-~~l~~~~-- 135 (260)
T 3lez_A 60 LEETITYSEEDLVTYSPITEQHV-DEGMTLVEIADAAIRYSDNTAGNLLLEAMGGPDELETILRDIGDET-IEMDRYE-- 135 (260)
T ss_dssp HHSEECCCGGGCCSSCTTGGGCT-TTCEEHHHHHHHHHHHCCHHHHHHHHHHTTSHHHHHHHHHHTTCCS-CBCCCCT--
T ss_pred CCCEEEEEHHHCCCCCCCCCCCC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH-HCCCCCC--
T ss_conf 77269961101147997401368-9833399999998861867999999998479446899999805133-2034576--
Q ss_pred CCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11122335544100114687-52130010022110011078230108999863078850320189999999999999873
Q gi|254781103|r 424 APSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV 502 (598)
Q Consensus 424 ~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv 502 (598)
....+.. .+. .-..||.+|+..+..+..+ +.+++.....+..+|....
T Consensus 136 ~~~~~~~----------~~~~~n~tTa~d~a~ll~~l~~~---------------------~~~~~~~~~~l~~~~~~~~ 184 (260)
T 3lez_A 136 TELNEAK----------PGDIRDTSTAKAMATTLQQYVLE---------------------DVLDADRREVLTNMLINNT 184 (260)
T ss_dssp TGGGCCC----------TTCCTTEEEHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHTCS
T ss_pred CCCCCCC----------CCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCC
T ss_conf 5455667----------89843440799999999999847---------------------8788889999999874471
Q ss_pred CCCCEEECC-CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEE--ECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 388464104-7973576672403512688766886217999997--4288809999998078888888743214678999
Q gi|254781103|r 503 TGGSGRRAF-VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVF--PTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV 579 (598)
Q Consensus 503 ~~GTg~~a~-~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~--P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~ 579 (598)
.......+. .+++.||+||||... .. ...+|+. |.+++.|+++|+...+.. ....+....+.|.
T Consensus 185 ~~~~~~~~~~~~~~~v~~KtG~~~~--------~~--~~dvgiv~~~~~~~~~iv~V~~~~~~~---~~~~~~~li~~is 251 (260)
T 3lez_A 185 TGDALIRAGVPDGWTVGDKTGAGGY--------GT--RNDIGIIWPEGDEEPIVIAIMSSRDEE---DADYDDKLIEKAT 251 (260)
T ss_dssp SCTTTGGGGSCTTCEEEEEEEEETT--------TE--EEEEEEEECTTTCCCEEEEEEEECSST---TCCCCTHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCC--------CC--EEEEEEEEECCCCEEEEEEEECCCCCC---CHHHHHHHHHHHH
T ss_conf 2543433447889778961056787--------87--689999997899359999998168987---8487999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781103|r 580 GNIIRRS 586 (598)
Q Consensus 580 ~~I~~~~ 586 (598)
+-|++.+
T Consensus 252 ~~v~~~l 258 (260)
T 3lez_A 252 EIVLQEL 258 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999996
No 22
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=99.64 E-value=5.1e-15 Score=112.88 Aligned_cols=230 Identities=18% Similarity=0.248 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
.....++++. +..+++ .+++|+|..||++|+ ++|++ ..|+|+|++|+++++++|
T Consensus 3 ~~~~~i~~~~----~~~~~~-~~~~v~D~~tg~~l~-----~~n~d----------------~~~~~AS~~Kl~~~~~~l 56 (263)
T 1m40_A 3 ETLVKVKDAE----DQLGAR-VGYIELDLNSGKILE-----SFRPE----------------ERFPMMSTFKVLLCGAVL 56 (263)
T ss_dssp HHHHHHHHHH----HHHTSE-EEEEEEETTTCCEEE-----EESTT----------------SCEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHCCCE-EEEEEEECCCCCEEE-----EECCC----------------CCCCCHHHHHHHHHHHHH
T ss_conf 0899999999----844985-999999999997877-----78899----------------854457899999999999
Q ss_pred H---CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCC
Q ss_conf 0---2403204421336763222101123454323003----9998550367123543202333-320011012225763
Q gi|254781103|r 343 D---SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSK 414 (598)
Q Consensus 343 e---~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~ 414 (598)
+ +|.+++++.+.........+.......+ +..++ +..++..|.|.....+++.+|. +.+.++++++|+..
T Consensus 57 ~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~-g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~gg~~~~~~~~~~~g~~~- 134 (263)
T 1m40_A 57 SRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHL-TDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV- 134 (263)
T ss_dssp HHHHTTSCCTTCEECCCGGGCCSCCTTGGGCT-TTCEEHHHHHHHHHHSCCHHHHHHHHHHHTSHHHHHHHHHHTTCSS-
T ss_pred HHHHCCCCCCCCEEEEEHHHCCCCCCCEECCC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHH-
T ss_conf 98652777877479984200237997301268-9816499999998862867999999998469348999999835466-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 44686542111122335544100114687521300100221100110782301089998630788503201899999999
Q gi|254781103|r 415 LETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTM 494 (598)
Q Consensus 415 t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l 494 (598)
+.++.+.. ... . ....+.....||.+|+..+..+.++ +.++++....+
T Consensus 135 ~~~~~~~~---~~~-~-------~~~~~~~~~~Ta~d~a~ll~~l~~~---------------------~~~~~~~~~~~ 182 (263)
T 1m40_A 135 TRLDRWEP---ELN-E-------AIPNDERDTTTPAAMATTLRKLLTG---------------------ELLTLASRQQL 182 (263)
T ss_dssp CCCCCCTT---GGG-C-------CCTTCCTTEECHHHHHHHHHHHHHS---------------------TTSCHHHHHHH
T ss_pred HHCCCCCC---CCC-C-------CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHH
T ss_conf 65168877---666-8-------9999876740899999999999838---------------------84688889999
Q ss_pred HHHHHHHHCCCCEEECC-CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEE-ECCCCEEEEEEEEECCC
Q ss_conf 99999873388464104-7973576672403512688766886217999997-42888099999980788
Q gi|254781103|r 495 RSLLREGVTGGSGRRAF-VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVF-PTTDPQYIVLSFMDSPK 562 (598)
Q Consensus 495 ~~~l~~vv~~GTg~~a~-~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~-P~~dP~~~v~V~v~~p~ 562 (598)
.++|.........-.+. .+++.+|+||||... ... ..+|+. |-+.+.|+++|+..++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~p~~~~v~~KTG~~~~-------~~~---~~~~iv~~~g~~~~ivvv~~~~~~ 242 (263)
T 1m40_A 183 IDWMEADKVAGPLLRSALPAGWFIADKSGAGER-------GSR---GIIAALGPDGKPSRIVVIYTTGSQ 242 (263)
T ss_dssp HHHHHCCSSCTTTGGGGCCTTCEEEEEEEECST-------TCE---EEEEEEESTTCCCEEEEEEEESCC
T ss_pred HHHHHCCEECCHHCCCCCCCCCEEEEEECCCCC-------CCC---EEEEEEEECCCEEEEEEEECCCCC
T ss_conf 988744813600001238999648883165778-------871---499999919975999999817998
No 23
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=99.62 E-value=9.3e-15 Score=111.23 Aligned_cols=243 Identities=16% Similarity=0.218 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
.+|..++..+.++ .+ ...++.++|..||++++. |+ ...|+|+|++|++++++++
T Consensus 19 ~l~~~l~~~~~~~---~~-~~~~v~v~dl~tg~~~~~------n~----------------d~~~~~AS~~Kl~~~~~~l 72 (298)
T 2j9o_A 19 NLQQQIQQLVSRQ---PN-LTAGLYFFNLDSGASLNV------GG----------------DQVFPAASTIKFPILVAFF 72 (298)
T ss_dssp HHHHHHHHHHHTC---TT-CEEEEEEEETTTCEEEEE------BT----------------TSCEECGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CC-CEEEEEEEECCCCCEEEE------CC----------------CCCEECHHHHHHHHHHHHH
T ss_conf 4999999997218---89-748999998999988998------89----------------9513255799999999999
Q ss_pred ---HCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHH----HHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCC
Q ss_conf ---02403204421336763222-1011234543230039998----55036712354320233-332001101222576
Q gi|254781103|r 343 ---DSGLFTVKDLFDTRNPIKVG-KHVIHDYHPQNRILTIPEI----FRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLS 413 (598)
Q Consensus 343 ---e~g~i~~~~~~~~~~~~~~~-~~~i~~~~~~~g~it~~~a----l~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~ 413 (598)
++|.+++++.+.+......+ ..... ....+..+++++. +..|.|+.+-.+...+| .+.+..+++++|+..
T Consensus 73 ~~v~~G~l~ld~~v~i~~~~~~~~~~~~~-~~~~g~~~tl~~ll~~mi~~SdN~Aa~~L~~~~g~~~~~n~~~~~~G~~~ 151 (298)
T 2j9o_A 73 KAVDEGRVTLQERLTMRPDLIAPEAGTLQ-YQKPNSQYAALEVAELMITISDNTATNMIIDRLGGAAELNQQFQEWGLEN 151 (298)
T ss_dssp HHHHTTSSCSSCEEECCGGGCCCSSCSGG-GSCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHTTCSS
T ss_pred HHHHCCCCCCCCCEEECHHHCCCCCCCCE-ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 99874998965566873776057997520-00699766899999999985448899999999577499999999769977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 34468654211112233554410011468752130010022110011078230108999863078850320189999999
Q gi|254781103|r 414 KLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKT 493 (598)
Q Consensus 414 ~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~ 493 (598)
+.+.-|. +.. ..+-..||-+|+..+..|.++ ..++++....
T Consensus 152 -t~~~~~~------~~~-----------~~~~~~ta~d~~~ll~~l~~~---------------------~~~~~~~~~~ 192 (298)
T 2j9o_A 152 -TVINNPE------PDM-----------KGTNTTSPRDLATLMLKIGQG---------------------EILSPRSRDR 192 (298)
T ss_dssp -CBCCSCT------TCT-----------TCCSEECHHHHHHHHHHHHTT---------------------CSSCHHHHHH
T ss_pred -EEECCCC------CCC-----------CCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHH
T ss_conf -1522788------765-----------668867999999999999818---------------------9789899999
Q ss_pred HHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEE-ECCCCEEEEEEEEECCCCCCCCCCCCH
Q ss_conf 9999998733884641047973576672403512688766886217999997-428880999999807888888874321
Q gi|254781103|r 494 MRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVF-PTTDPQYIVLSFMDSPKIKERNQLTAG 572 (598)
Q Consensus 494 l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~-P~~dP~~~v~V~v~~p~~~~~~~~~Gg 572 (598)
+.+.|+....+..-+.....+..|+.|||+... .. .-+|+. .-+..+|+++|+..++... ..
T Consensus 193 l~~~m~~~~~~~~i~~~lp~~~~v~~KtG~~~~--------~~---~d~giv~~~~g~~yi~avl~~~~~~~----~~-- 255 (298)
T 2j9o_A 193 LLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGI--------VV---GDAGMVDMPNGQRYVAAMMVKRPYND----PR-- 255 (298)
T ss_dssp HHHHHTSCSCCSSGGGGSCTTCEEEEEEEECSS--------EE---EEEEEEECTTSCEEEEEEEEECSTTC----HH--
T ss_pred HHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCC--------CC---EEEEEEEECCCCEEEEEEEECCCCCC----HH--
T ss_conf 999997087876302318999889876356126--------10---58999994799889999994799761----88--
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 467899999999999981
Q gi|254781103|r 573 INVAPMVGNIIRRSASML 590 (598)
Q Consensus 573 ~~AaPi~~~I~~~~~~~~ 590 (598)
+.-+.++|.+.+..++
T Consensus 256 --~~~~i~~i~~~v~~~f 271 (298)
T 2j9o_A 256 --GSELIRQVSRMVYQAF 271 (298)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH
T ss_conf --9999999999999998
No 24
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Probab=99.59 E-value=7.2e-15 Score=111.93 Aligned_cols=243 Identities=18% Similarity=0.175 Sum_probs=146.2
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCE
Q ss_conf 44210011323431112230232032111210014731113444323222223324566432012356544302---403
Q gi|254781103|r 271 ELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS---GLF 347 (598)
Q Consensus 271 ~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~---g~i 347 (598)
+|.+..+.++++.| ++++|.+||++++. |+ ...|+|+|++|+++++++|+. |.
T Consensus 3 el~~~~~~~~~~~g-v~~~d~~tG~~~~~------n~----------------d~~~~~AS~~Kl~~~~~~l~~~~~g~- 58 (258)
T 1ghp_A 3 ELNDLEKKYNAHIG-VYALDTKSGKEVKF------NS----------------DKRFAYASTSKAINSAILLEQVPYNK- 58 (258)
T ss_dssp HHHHHHHHTTCEEE-EEEEETTTCCEEEE------ST----------------TSCEECGGGHHHHHHHHHHHHSCGGG-
T ss_pred HHHHHHHHCCCEEE-EEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHHHCCC-
T ss_conf 79999987098699-99998999988998------89----------------97184689999999999999745689-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 204421336763222101123454323003----999855036712354320233-332001101222576344686542
Q gi|254781103|r 348 TVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEI 422 (598)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e 422 (598)
.++.+..+......+........ ++.++ ++.++..|.|.....+++.+| .+.+..+++.+|... +.++.+..
T Consensus 59 -L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~mi~~SdN~aa~~l~~~l~~~~~~~~~~~~~~~~~-t~l~~~~~ 135 (258)
T 1ghp_A 59 -LNKKVHINKDDIVAYSPILEKYV-GKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKV-TNPVRYDI 135 (258)
T ss_dssp -GGCEEEECGGGCCSSCTTGGGGT-TEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCS-CBCCSCTT
T ss_pred -CCCEEEEEHHHHCCCCCCEEECC-CCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCHHH-HCCCCCCC
T ss_conf -98438974665227997423248-9822099999999861659999999998189378899999626143-22477667
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11112233554410011468752130010022110011078230108999863078850320189999999999999873
Q gi|254781103|r 423 QAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV 502 (598)
Q Consensus 423 ~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv 502 (598)
...+..+ .+.+..+||.+|+..+..+.++ +.+++.....+..+|....
T Consensus 136 --~~~~~~~---------~~~~~~tTa~d~a~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~~~ 183 (258)
T 1ghp_A 136 --ELQYYSP---------KSKKDTSTPAAFGKTLNKLIAN---------------------GKLSKENKKFLLDLMLNNK 183 (258)
T ss_dssp --GGGCCCT---------TCCTTEECHHHHHHHHHHHTTS---------------------SSSCHHHHHHHHHHHHHCG
T ss_pred --CCCCCCC---------CCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCC
T ss_conf --5568889---------9855654899999999999748---------------------8642688999999985482
Q ss_pred CCC-CEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEE--EEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 388-46410479735766724035126887668862179999--974288809999998078888888743214678999
Q gi|254781103|r 503 TGG-SGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLA--VFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV 579 (598)
Q Consensus 503 ~~G-Tg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG--~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~ 579 (598)
... .......+++.+++||||.... ... ..+| ++|..++.|+++|+.+.+..... .. -.+.
T Consensus 184 ~~~~~~~~~~~~~~~v~~KtG~~~~~-------g~~--~d~giv~~~~~~~~~vi~V~~~~~~~~~~---~~----~~li 247 (258)
T 1ghp_A 184 SGDTLIKDGVPKDYKVADKSGQAITY-------ASR--NDVAFVYPKGQSEPIVLVIFTNKDNKSDK---PN----DKLI 247 (258)
T ss_dssp GGTTTHHHHSCTTSEEEEEEEECSST-------TCE--EEEEEEECTTCCSCEEEEEEEECSSTTCC---CC----HHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCC-------CCE--EEEEEEEECCCCEEEEEEEEECCCCCCHH---HH----HHHH
T ss_conf 14012343479887588777488776-------527--89999998999748999999179986869---99----9999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781103|r 580 GNIIRRSAS 588 (598)
Q Consensus 580 ~~I~~~~~~ 588 (598)
++|.+.++.
T Consensus 248 ~~is~~~~~ 256 (258)
T 1ghp_A 248 SETAKSVMK 256 (258)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 999999997
No 25
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae}
Probab=99.57 E-value=3.8e-14 Score=107.38 Aligned_cols=213 Identities=19% Similarity=0.185 Sum_probs=140.6
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCCCC
Q ss_conf 111223023203211121001473111344432322222332456643201235654430---24032044213367632
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNPIK 360 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~~~ 360 (598)
.++.++|..||++++. | + ...|+|.|++|.++++++|+ +|.+++++.+.+...-.
T Consensus 39 ~gv~v~d~~tg~~~~~--------------------n-~-d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~ 96 (287)
T 2qpn_A 39 IGVAIVDPQGEIVAGH--------------------R-M-AQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMI 96 (287)
T ss_dssp EEEEEECTTCCEEEEE--------------------S-T-TSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGC
T ss_pred EEEEEEECCCCCEEEE--------------------C-C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHH
T ss_conf 9999998999948987--------------------6-9-9742545899999999999987638877661575058885
Q ss_pred CCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22101123454323003999----855036712354320233-3320011012225763446865421111223355441
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIH 435 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~ 435 (598)
.++.........++.+++++ ++..|.|..+..|++.+| .+.+..+++++|+.. +.++.... ...+..+
T Consensus 97 ~~~~~~~~~~~~~~~~tl~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~g~~~-~~l~~~~~--~~~~~~~---- 169 (287)
T 2qpn_A 97 VEWSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSV-SRLDRKEP--EMGDNTP---- 169 (287)
T ss_dssp CSSCHHHHHHTTTTEEEHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHTTCSS-CCCCCCTT--GGGCCCT----
T ss_pred HCCCCCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHH-HHCCCCCC--CCCCCCC----
T ss_conf 2579750342589787899999999995526999999999489557899999826343-31367776--5566788----
Q ss_pred CEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE-ECCCCC
Q ss_conf 0011468752130010022110011078230108999863078850320189999999999999873388464-104797
Q gi|254781103|r 436 SLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGR-RAFVPG 514 (598)
Q Consensus 436 ~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~-~a~~~g 514 (598)
.......||-+|+..+..+.++ ..++++....+.++|.........- ....++
T Consensus 170 -----~~~~~~tta~d~~~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 223 (287)
T 2qpn_A 170 -----GDLRDTTTPIAMARTVAKVLYG---------------------GALTSTSTHTIERWLIGNQTGDATLRAGFPKD 223 (287)
T ss_dssp -----TCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHTCSSCTTSGGGGSCTT
T ss_pred -----CCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCEECHHHHHCCCCCC
T ss_conf -----9865640799999999998744---------------------33478999999999736835222343048989
Q ss_pred EEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECC
Q ss_conf 35766724035126887668862179999974288809999998078
Q gi|254781103|r 515 FEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSP 561 (598)
Q Consensus 515 ~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p 561 (598)
+.++.||||... . ...++|+...++..|+++|+...+
T Consensus 224 ~~v~~KTG~~~~--------~--~~~dvgiv~~~~~~~ii~Vl~~~~ 260 (287)
T 2qpn_A 224 WVVGEKTGTCAN--------G--GRNDIGFFKAQERDYAVAVYTTAP 260 (287)
T ss_dssp SEEEEEEEEETT--------T--EEEEEEEEEETTEEEEEEEEEECT
T ss_pred CEEEEEECCCCC--------C--CEEEEEEEEECCEEEEEEEEECCC
T ss_conf 768996053678--------6--559999999899569999992599
No 26
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1
Probab=99.54 E-value=1.1e-13 Score=104.35 Aligned_cols=248 Identities=17% Similarity=0.219 Sum_probs=154.3
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
++.|.+..++++++ .++.++|.+||++++. |+ ...|+|+||+|+++++++|+ +|
T Consensus 4 ~~~l~~~~~~~~~~-~gv~v~dl~tG~~~~~------n~----------------d~~~~~AS~~Kl~~a~~~l~~~~~g 60 (262)
T 2cc1_A 4 DDQLAELERRDNVL-IGLYAANLQSGRRITH------RP----------------DEMFAMCSTFKGYVAARVLQMAEHG 60 (262)
T ss_dssp HHHHHHHHHHHTEE-EEEEEEETTTCCEEEE------ST----------------TSCEECGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCE-EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999864986-9999999999988888------99----------------9849838999999999999975528
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHCCCCCEEEEEEECC-CCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 032044213367632221011234543230039----9985503671235432023-33320011012225763446865
Q gi|254781103|r 346 LFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTI----PEIFRYSSNIGAAQIADAM-GIQGHKEFLYRLGLLSKLETELP 420 (598)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~----~~al~~S~Nv~~~~i~~~l-g~~~~~~~~~~fG~g~~t~idlp 420 (598)
.+++++.+.+.......+...-. ...+..+++ ..++..|.|..+..+++.+ |.+.+.++++++|+.. +.++..
T Consensus 61 ~~~l~~~v~~~~~~~~~~~~~~~-~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~~g~~~~~~~~~~~g~~~-t~~~~~ 138 (262)
T 2cc1_A 61 EISLDNRVFVDADALVPNSPVTE-ARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFARSVGDER-TRLDRW 138 (262)
T ss_dssp SSCTTCEEECCGGGCCSSCHHHH-TTTTSEEEHHHHHHHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHTTCCS-CCCCSC
T ss_pred CCCCCEEEEEEHHHCCCCCCCEE-CCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCHHH-HCCCCC
T ss_conf 99865389976423037997401-2689806399999999873447999999998499548899999644666-125766
Q ss_pred CCCCCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 42111122335544100114687-52130010022110011078230108999863078850320189999999999999
Q gi|254781103|r 421 EIQAPSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499 (598)
Q Consensus 421 ~e~~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~ 499 (598)
.. ...+ ...++ ....||-+|+..+..+..+ +.++++....+.++|.
T Consensus 139 ~~--~~~~----------~~~~~~~~~sTa~d~~~l~~~l~~~---------------------~~~~~~~~~~l~~~l~ 185 (262)
T 2cc1_A 139 EV--ELNS----------AIPGDPRDTSTPAALAVGYRAILAG---------------------DALSPPQRGLLEDWMR 185 (262)
T ss_dssp TT--GGGG----------CCTTCCTTEECHHHHHHHHHHHHHS---------------------SSSCHHHHHHHHHHHH
T ss_pred CC--CCCC----------CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHH
T ss_conf 55--5567----------8899887764499999999999758---------------------8579899999999985
Q ss_pred HHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 873388464104797357667240351268876688621799999742-8880999999807888888874321467899
Q gi|254781103|r 500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVAPM 578 (598)
Q Consensus 500 ~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi 578 (598)
....... .....+++.++.|||+.. ... .-.+|+.-. +..+|+++|+...|..... ...+.++
T Consensus 186 ~~~~~~~-~~~~~~~~~v~~KtG~~~--------~~~--~~d~g~v~~~~g~~~i~vv~~~~~~~~~~-----~~~~~~l 249 (262)
T 2cc1_A 186 ANQTSSM-RAGLPEGWTTADKTGSGD--------YGS--TNDAGIAFGPDGQRLLLVMMTRSQAHDPK-----AENLRPL 249 (262)
T ss_dssp TCSCCSG-GGGSCTTCEEEEEEEECS--------TTC--EEEEEEEECTTSCEEEEEEEEEESSSCTT-----CCCCHHH
T ss_pred CCCCCCC-CCCCCCCCEEEEEEEECC--------CCC--EEEEEEEECCCCCEEEEEEEECCCCCCCC-----HHHHHHH
T ss_conf 2737885-444788861788861548--------885--78999999289989999999689986605-----8999999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999981
Q gi|254781103|r 579 VGNIIRRSASML 590 (598)
Q Consensus 579 ~~~I~~~~~~~~ 590 (598)
+.++.+.+.+.|
T Consensus 250 i~~isr~v~~~l 261 (262)
T 2cc1_A 250 IGELTALVLPSL 261 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999975
No 27
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A
Probab=99.51 E-value=2.4e-13 Score=102.27 Aligned_cols=250 Identities=18% Similarity=0.200 Sum_probs=150.1
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 77764421001132343111223023203211121001473111344432322222332456643201235654430---
Q gi|254781103|r 267 IVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID--- 343 (598)
Q Consensus 267 ~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe--- 343 (598)
.+++++.......++ +.++.++|..||++++. |+ ...|+|+|++|+++++++|+
T Consensus 7 ~l~~~~~~~~~~~~~-~~gv~v~D~~tG~~~~~------n~----------------d~~~~~AS~~Kl~~~~a~l~~~~ 63 (271)
T 1g6a_A 7 QVEQDVKAIEVSLSA-RIGVSVLDTQNGEYWDY------NG----------------NQRFPLTSTFKTIACAKLLYDAE 63 (271)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEEEETTTTEEEEE------ST----------------TSCEECGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-EEEEEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHHH
T ss_conf 999999999985598-29999998999988898------99----------------97484289999999999999986
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCC
Q ss_conf 2403204421336763222101123454323003----999855036712354320233-33200110122257634468
Q gi|254781103|r 344 SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETE 418 (598)
Q Consensus 344 ~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~id 418 (598)
+|.+++++.+.........+........ +..++ +..++..|+|+.+..|+..+| .+.+..+++++|+... .++
T Consensus 64 ~g~l~~~~~~~~~~~~~~~~s~~~~~~~-g~~~t~~~ll~~~l~~SdN~A~~~L~~~lg~~~~~~~~~~~~g~~~~-~~~ 141 (271)
T 1g6a_A 64 QGKVNPNSTVEIKKADLVTYSPVIEKQV-GQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKET-RLD 141 (271)
T ss_dssp TTSCCTTCEEECCGGGCCSSCTTGGGCT-TSEEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCSSC-BCC
T ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCC-CCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHH-HCC
T ss_conf 3998867527864899605998401268-97246999998877448379999999984795489999998374433-226
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCC-CCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 654211112233554410011468-7521300100221100110782301089998630788503201899999999999
Q gi|254781103|r 419 LPEIQAPSYPSQWKRIHSLTISFG-HGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSL 497 (598)
Q Consensus 419 lp~e~~g~~p~~~~~~~~~~~~~G-qg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~ 497 (598)
-.. ..... ...| .....||-+++..+..+..+ +.+++.....+.++
T Consensus 142 ~~~---~~~~~---------~~~~~~~~~~t~~~~~~l~~~l~~~---------------------~~~~~~~~~~l~~~ 188 (271)
T 1g6a_A 142 RIE---PDLNE---------GKLGDLRDTTTPKAIASTLNKFLFG---------------------SALSEMNQKKLESW 188 (271)
T ss_dssp CCT---TGGGC---------CCTTCCTTEECHHHHHHHHHHHHHS---------------------SSSCHHHHHHHHHH
T ss_pred CCC---CCCCC---------CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHH
T ss_conf 777---65557---------8899733340699999999999837---------------------74336789999999
Q ss_pred HHHHHCCCC-EEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 998733884-64104797357667240351268876688621799999742-8880999999807888888874321467
Q gi|254781103|r 498 LREGVTGGS-GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINV 575 (598)
Q Consensus 498 l~~vv~~GT-g~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~A 575 (598)
|........ ......+++.++.|||+.. .... -++|+.-. +.+.|+++|++.++... ...+
T Consensus 189 ~~~~~~~~~~~~~~~p~~~~v~~KtG~~~--------~~~~--~~~giv~~~~~~~yviaV~~~~~~~~-------~~~~ 251 (271)
T 1g6a_A 189 MVNNQVTGNLLRSVLPAGWNIADKSGAGG--------FGAR--SITAVVWSEHQAPIIVSIYLAQTQAS-------MEER 251 (271)
T ss_dssp HHTCSSCTTTGGGGCCTTCEEEEEEEECG--------GGCE--EEEEEEEETTEEEEEEEEEEESCCCC-------HHHH
T ss_pred HHCCCCCCCCCCCCCCCCCEEEEEECCCC--------CCCE--EEEEEEEECCCCEEEEEEEECCCCCC-------HHHH
T ss_conf 85261066544344788875999824158--------8877--89999996899889999993699999-------8999
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8999999999999818
Q gi|254781103|r 576 APMVGNIIRRSASMLG 591 (598)
Q Consensus 576 aPi~~~I~~~~~~~~~ 591 (598)
.-++++|.+.+..+|.
T Consensus 252 ~~~i~~is~~i~~~~~ 267 (271)
T 1g6a_A 252 NDAIVKIGHSIFDVYT 267 (271)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 28
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A
Probab=99.51 E-value=3.6e-13 Score=101.15 Aligned_cols=253 Identities=16% Similarity=0.164 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 77777644210011323431112230232032111210014731113444323222223324566432012356544302
Q gi|254781103|r 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 (598)
Q Consensus 265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~ 344 (598)
|.-++++|.+-.++++++-| +.++|..||++++. |+ ...|+|+|++|+++++++|++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~g-v~v~D~~tG~~~~~------n~----------------d~~~~~AS~~Kl~~~~~~l~~ 57 (265)
T 2wk0_A 1 KTEMKDDFAKLEEQFDAKLG-IFALDTGTNRTVTY------RP----------------DERFAFASTIKALTVGVLLQQ 57 (265)
T ss_dssp -----CHHHHHHHHHTCEEE-EEEEETTTCCEEEE------ST----------------TCEEECGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEE-EEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHH
T ss_conf 91579999999997498699-99998999988898------89----------------964723889999999999996
Q ss_pred -CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCCC
Q ss_conf -403204421336763222101123454323003999----8550367123543202333-3200110122257634468
Q gi|254781103|r 345 -GLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLETE 418 (598)
Q Consensus 345 -g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~id 418 (598)
+..++++.+.........+.... +...+..+++++ .+..|.|..+..|++.+|. .....+++++|+.. +.++
T Consensus 58 ~~~~~ld~~~~~~~~~~~~~~~~~-~~~~g~~~t~~~l~~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~g~~~-~~~~ 135 (265)
T 2wk0_A 58 KSIEDLNQRITYTRDDLVNYNPIT-EKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEV-TNPE 135 (265)
T ss_dssp CCTGGGGCEECCCTTTCCSCCTTG-GGCTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCS-CCCC
T ss_pred CCCCCCCCEEEEEHHHHCCCCCCC-CCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCHHH-HCCC
T ss_conf 687775746997566531688742-34689833399999999986356999999998543316999999620445-1013
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 65421111223355441001146875213001002211001107823010899986307885032018999999999999
Q gi|254781103|r 419 LPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLL 498 (598)
Q Consensus 419 lp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l 498 (598)
.+ .....+.. ........||-+++..+..+.++ ..++++....+.++|
T Consensus 136 ~~--~~~~~~~~---------~~~~~~~~t~~~~~~~l~~l~~~---------------------~~~~~~~~~~~~~~~ 183 (265)
T 2wk0_A 136 RF--EPELNEVN---------PGETQDTSTARALATSLQAFALE---------------------DKLPSEKRELLIDWM 183 (265)
T ss_dssp CC--TTGGGCCC---------TTCCTTEEEHHHHHHHHHHHHTS---------------------TTSCHHHHHHHHHHH
T ss_pred CC--CCCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHH
T ss_conf 45--56556788---------99744445799999999999607---------------------656888999999998
Q ss_pred HHHHCCCCEEEC-CCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 987338846410-4797357667240351268876688621799999742-88809999998078888888743214678
Q gi|254781103|r 499 REGVTGGSGRRA-FVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVA 576 (598)
Q Consensus 499 ~~vv~~GTg~~a-~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~Aa 576 (598)
...........+ ..++..++.|||+.+. . -..++|+.-. +..+|+++|+.+.|.... ..+-
T Consensus 184 ~~~~~~~~~~~~~~~~~~~v~~KtG~~~~--------~--~~~~~giv~~~~g~~yiiaVl~~~~~~~~-------~~~~ 246 (265)
T 2wk0_A 184 KRNTTGDALIRAGVPEGWEVADKTGAGSY--------G--TRNDIAIIWPPKGDPVVLAVLSSRDKKDA-------KYDD 246 (265)
T ss_dssp HTCSSCTTTGGGGSCTTCEEEEEEEEETT--------T--EEEEEEEEECSSSCCEEEEEEEECSSTTC-------CCCT
T ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEECCC--------C--CEEEEEEEECCCCCEEEEEEECCCCCCCH-------HHHH
T ss_conf 53755743212457888669994614587--------7--07899999928998899999907999887-------8999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999999818
Q gi|254781103|r 577 PMVGNIIRRSASMLG 591 (598)
Q Consensus 577 Pi~~~I~~~~~~~~~ 591 (598)
.++++|.+.+..++.
T Consensus 247 ~~i~~i~~~i~~~~~ 261 (265)
T 2wk0_A 247 KLIAEATKVVVKALN 261 (265)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999986
No 29
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ...
Probab=99.45 E-value=2.3e-12 Score=95.98 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
.||+.+++. .+..++ ..+++|+|.+||++++. | + ...|+|+|++|.++++++|
T Consensus 4 ~l~~~l~~~----~~~~~~-~~~v~v~D~~tg~~~~~------n---------------~-d~~~~~AS~~Kl~~~~~~l 56 (263)
T 2p74_A 4 AVQQKLAAL----EKSSGG-RLGVALIDTADNTQVLY------R---------------G-DERFPMCSTSKVMAAAAVL 56 (263)
T ss_dssp HHHHHHHHH----HHHHTS-EEEEEEEETTTTEEEEE------S---------------T-TSCEECGGGGHHHHHHHHH
T ss_pred HHHHHHHHH----HHHCCC-EEEEEEEECCCCCEEEE------C---------------C-CCCCCCHHHHHHHHHHHHH
T ss_conf 899999999----986498-69999999999988998------8---------------9-9707527899999999999
Q ss_pred H---CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECC-CCCCCHHHCCCCCCCCC
Q ss_conf 0---2403204421336763222101123454323003----99985503671235432023-33320011012225763
Q gi|254781103|r 343 D---SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAM-GIQGHKEFLYRLGLLSK 414 (598)
Q Consensus 343 e---~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~l-g~~~~~~~~~~fG~g~~ 414 (598)
+ +|.+++++.+.........+....... .++.++ +..++..|.|..+..++..+ |.+.+.++++++|+..
T Consensus 57 ~~i~~g~~~l~~~v~~~~~~~~~~~~~~~~~-~g~~~~~~~ll~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~g~~~- 134 (263)
T 2p74_A 57 KQSETQKQLLNQPVEIKPADLVNYNPIAEKH-VNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDET- 134 (263)
T ss_dssp HHHTTCTTGGGCEEECCGGGCCSCCTTGGGG-TTSEEEHHHHHHHHHHHCCHHHHHHHHHHTTSHHHHHHHHHHTTCSS-
T ss_pred HHHHCCCCCCCCEEEECHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCC-
T ss_conf 9876389997746996066602799841036-79843199999999874447999999998488417999999769633-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 446865421111223355441001146875-2130010022110011078230108999863078850320189999999
Q gi|254781103|r 415 LETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKT 493 (598)
Q Consensus 415 t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~ 493 (598)
+.++.... ...+ ..-+++ -..||-+++..+..+..+ +.++++....
T Consensus 135 t~~~~~~~--~~~~----------~~~~~~~~~~T~~d~a~ll~~l~~~---------------------~~~~~~~~~~ 181 (263)
T 2p74_A 135 FRLDRTEP--TLNT----------AIPGDPRDTTTPRAMAQTLRQLTLG---------------------HALGETQRAQ 181 (263)
T ss_dssp CCCCCCTT--GGGC----------CCTTCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHH
T ss_pred EECCCCCC--CCCC----------CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHH
T ss_conf 87378764--4567----------8899766633699999999999838---------------------8788899999
Q ss_pred HHHHHHHHHCCCC-EEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCC
Q ss_conf 9999998733884-6410479735766724035126887668862179999974288-80999999807888
Q gi|254781103|r 494 MRSLLREGVTGGS-GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKI 563 (598)
Q Consensus 494 l~~~l~~vv~~GT-g~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~ 563 (598)
+.++|........ -.....++++++.|||+.. ... -.++|+.-.++ ..|+++|++.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~--------~~~--~~dvgiv~~~g~~~~iv~v~~~~~~~ 243 (263)
T 2p74_A 182 LVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGD--------YGT--TNDIAVIWPQGRAPLVLVTYFTQPQQ 243 (263)
T ss_dssp HHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEET--------TTE--EEEEEEEECTTSCCEEEEEEEECSST
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--------CCC--EEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 999985586665432333788887888405867--------875--78999999699968999999479998
No 30
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=99.44 E-value=1.9e-12 Score=96.54 Aligned_cols=256 Identities=17% Similarity=0.204 Sum_probs=153.1
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--
Q ss_conf 777764421001132343111223023203211121001473111344432322222332456643201235654430--
Q gi|254781103|r 266 NIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID-- 343 (598)
Q Consensus 266 ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe-- 343 (598)
..+|+.|....+...++ -++.+.|..||++++. |+ ...|+|+|++|.++++++|+
T Consensus 4 ~~l~~~l~~~~~~~~~~-~gv~v~d~~tg~~~~~------n~----------------d~~~~~AS~~Kl~~~~~~l~~i 60 (271)
T 1hzo_A 4 NTIEEQLNTLEKYSQGR-LGVALINTEDNSQITY------RG----------------EERFAMASTSKVMAVAAVLKAS 60 (271)
T ss_dssp CHHHHHHHHHHHHHTSE-EEEEEEETTTTEEEEE------ST----------------TSCEECGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCE-EEEEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHH
T ss_conf 68999999999874986-9999998999998998------89----------------9707238899999999999974
Q ss_pred -CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCC
Q ss_conf -2403204421336763222101123454323003----999855036712354320233-3320011012225763446
Q gi|254781103|r 344 -SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLET 417 (598)
Q Consensus 344 -~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~i 417 (598)
.|.+++++.+.........+..+..... +..++ +..++..|.|..+..+++.+| .+.+..+++++|+... .+
T Consensus 61 ~~g~~~l~~~i~~~~~~~~~~~~~~~~~~-g~~~s~~~ll~~mi~~SdN~Aa~~L~~~~gg~~~~~~~~~~~g~~~~-~l 138 (271)
T 1hzo_A 61 EKQAGLLDKNITIKKSDLVAYSPITEKHL-TTGMTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTY-RL 138 (271)
T ss_dssp HHSTTGGGCEECCCGGGCCSCCTTGGGCT-TTCEEHHHHHHHHHHTCCHHHHHHHHHHHTSHHHHHHHHHHTTCSSC-CC
T ss_pred HCCCCCCCCEEEECHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHH-HC
T ss_conf 53898878559975999625787533468-98510999999999854449999999983690789999999363433-14
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 865421111223355441001146875-2130010022110011078230108999863078850320189999999999
Q gi|254781103|r 418 ELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496 (598)
Q Consensus 418 dlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~ 496 (598)
+-. . +. +.. ...+.. -..||-+|+.....+..+ ..++++....+..
T Consensus 139 ~~~--~-~~-~~~--------~~~~~~~~~tTa~d~a~ll~~l~~~---------------------~~~~~~~~~~~~~ 185 (271)
T 1hzo_A 139 DRK--E-PE-LNT--------AIHGDPRDTTSPIAMAKSLQALTLG---------------------DALGQSQRQQLVT 185 (271)
T ss_dssp CCC--T-TG-GGC--------CCTTCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHH
T ss_pred CCC--C-CC-CCC--------CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHH
T ss_conf 677--6-54-556--------7899876743899999999999738---------------------8656678999999
Q ss_pred HHHHHHCCCCEE-ECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 999873388464-10479735766724035126887668862179999974288-8099999980788888887432146
Q gi|254781103|r 497 LLREGVTGGSGR-RAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIKERNQLTAGIN 574 (598)
Q Consensus 497 ~l~~vv~~GTg~-~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~~~~~~~Gg~~ 574 (598)
+|.......... ....++..++.|||+.. .. ....+|+.-.++ ..|+++|+..++.... ..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~--------~~--~~~d~giv~~~~~~~yiv~v~~~~~~~~~-------~~ 248 (271)
T 1hzo_A 186 WLKGNTTGDNSIKAGLPKHWVVGDKTGSGD--------YG--TTNDIAVIWPENHAPLILVVYFTQQEQNA-------KY 248 (271)
T ss_dssp HHHTCSSCTTTGGGGSCTTSEEEEEEEEET--------TT--EEEEEEEEECTTSCCEEEEEEEECSSTTC-------CC
T ss_pred HHHCCEECCCCCCCCCCCCEEEEEEECCCC--------CC--CEEEEEEEEECCCCEEEEEEEECCCCCCH-------HH
T ss_conf 982776366333345786159999827877--------77--47999999938999899999957999997-------99
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7899999999999981899855
Q gi|254781103|r 575 VAPMVGNIIRRSASMLGVKPVF 596 (598)
Q Consensus 575 AaPi~~~I~~~~~~~~~i~P~~ 596 (598)
..-++++|.+.+...+.=-|.+
T Consensus 249 ~~~~i~~ia~~v~~~~~~~p~~ 270 (271)
T 1hzo_A 249 RKDIIAKAAEIVTKEISNSPQT 270 (271)
T ss_dssp CHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999857899
No 31
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1
Probab=99.41 E-value=1.1e-12 Score=98.15 Aligned_cols=254 Identities=12% Similarity=0.130 Sum_probs=151.2
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---C
Q ss_conf 7764421001132343111223023203211121001473111344432322222332456643201235654430---2
Q gi|254781103|r 268 VHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---S 344 (598)
Q Consensus 268 ~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~ 344 (598)
+++.|.+.++.+++..| +++-|..||+.++ |||+ ..|+|+|++|+++++++|+ +
T Consensus 5 L~~~i~~i~~~~~~~~g-v~v~~~~~~~~~~------~n~~----------------~~~~~AS~~Kl~~a~~~l~~i~~ 61 (282)
T 1e25_A 5 LKEQIESIVIGKKATVG-VAVWGPDDLEPLL------INPF----------------EKFPMQSVFKLHLAMLVLHQVDQ 61 (282)
T ss_dssp HHHHHHHHHTTSSSEEE-EEEECTTCSSCEE------ESTT----------------CCEECGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEE-EEEEECCCCEEEE------ECCC----------------CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999972799599-9999899981899------8899----------------84554899999999999999875
Q ss_pred CCEECCCCCCCCCCCC-CCCCCCC-C-CCCCCCCCCHHH----HHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCC
Q ss_conf 4032044213367632-2210112-3-454323003999----855036712354320233-332001101222576344
Q gi|254781103|r 345 GLFTVKDLFDTRNPIK-VGKHVIH-D-YHPQNRILTIPE----IFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLE 416 (598)
Q Consensus 345 g~i~~~~~~~~~~~~~-~~~~~i~-~-~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~ 416 (598)
|.+++++.+....... .++.... . .-..+..+|+++ .+..|.|+....+++.+| .+.+..+++++|.....
T Consensus 62 g~l~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~n~~~~~~g~~~~~- 140 (282)
T 1e25_A 62 GKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETA- 140 (282)
T ss_dssp TSSCTTCEEEEETTTSCCSSCCTHHHHSCSSEEEEEHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHTTCCSBC-
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCHHEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
T ss_conf 9988310025768887416887420021079980569999999999595199999999828846899999983034312-
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 68654211112233554410011468752130010022110011078230108999863078850320189999999999
Q gi|254781103|r 417 TELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496 (598)
Q Consensus 417 idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~ 496 (598)
+.-+ .+..+.. ...+..-..||.+|+..+..+.++ ..+++.....+.+
T Consensus 141 ~~~~---~~~~~~~--------~~~~~~n~~Ta~d~~~ll~~l~~~---------------------~~~~~~~~~~~~~ 188 (282)
T 1e25_A 141 VVAN---EAQMHAD--------DQVQYQNWTSMKGAAEILKKFEQK---------------------TQLSETSQALLWK 188 (282)
T ss_dssp CCCC---HHHHHHC--------TTGGGGSEECHHHHHHHHHHHHTT---------------------CSSCHHHHHHHHH
T ss_pred CCCC---CCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHH
T ss_conf 3466---4455655--------578742133199999999999848---------------------8668889999999
Q ss_pred HHHHHHCCCCEEECC-CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEE-ECCCCEEEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 999873388464104-7973576672403512688766886217999997-42888099999980788888887432146
Q gi|254781103|r 497 LLREGVTGGSGRRAF-VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVF-PTTDPQYIVLSFMDSPKIKERNQLTAGIN 574 (598)
Q Consensus 497 ~l~~vv~~GTg~~a~-~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~-P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~ 574 (598)
.|.......+..... ..++.++.|||+......+ + ...+.+|+. +.++.+|+++|+..+|... ...
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~v~~ktG~~~~~gg~-~----g~~~d~giv~~~~g~~~iiaV~~~~~~~~-------~~~ 256 (282)
T 1e25_A 189 WMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGK-T----AATNDLGIILLPDGRPLLVAVFVKDSAES-------SRT 256 (282)
T ss_dssp HHHSCCSCTTSTTTTSCTTCCEEEEEEECCEETTE-E----EEEEEEEEEECTTSCEEEEEEEEEEECSC-------HHH
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-E----EEEEEEEEEECCCCCEEEEEEEECCCCCC-------HHH
T ss_conf 98548644433123488887543214764546875-3----48998999986999989999994599889-------889
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789999999999998
Q gi|254781103|r 575 VAPMVGNIIRRSASM 589 (598)
Q Consensus 575 AaPi~~~I~~~~~~~ 589 (598)
...++.+|.+.+..|
T Consensus 257 ~~~~i~~i~~~~~~~ 271 (282)
T 1e25_A 257 NEAIIAQVAQTAYQF 271 (282)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 32
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A*
Probab=99.41 E-value=3.4e-12 Score=94.91 Aligned_cols=234 Identities=17% Similarity=0.186 Sum_probs=141.9
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCCC
Q ss_conf 3111223023203211121001473111344432322222332456643201235654430---2403204421336763
Q gi|254781103|r 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNPI 359 (598)
Q Consensus 283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~~ 359 (598)
+.+++++|..||++++-. | -...|+|+|++|+++++++|+ +|.+++++.+......
T Consensus 18 ~vg~~v~D~~tG~~l~~~-----n----------------~d~~~~~AS~~Kl~i~~~~l~~i~~g~l~~~~~i~~~~~~ 76 (265)
T 1n9b_A 18 RVGMIEMDLASGRTLTAW-----R----------------ADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQD 76 (265)
T ss_dssp EEEEEEEETTTCCEEEEE-----S----------------TTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGG
T ss_pred EEEEEEEECCCCCEEEEE-----C----------------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHH
T ss_conf 699999999999386678-----8----------------9985444889999999999998774898867179964677
Q ss_pred CCCC-CCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2221-01123454323003----999855036712354320233-33200110122257634468654211112233554
Q gi|254781103|r 360 KVGK-HVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKR 433 (598)
Q Consensus 360 ~~~~-~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~ 433 (598)
...+ ...... .+..++ +..++..|.|+.+..+++.+| .+.+.++++++|+... .++.... ...+
T Consensus 77 ~~~~~~~~~~~--~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~~~~~~-~~~~~~~--~~~~----- 146 (265)
T 1n9b_A 77 LVDYSPVSEKH--LADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVT-RLDRWET--ELNE----- 146 (265)
T ss_dssp CCSCCTTGGGG--TTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCSC-BCCCCTT--GGGC-----
T ss_pred HCCCCCCCCCC--CCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCCCC--CCCC-----
T ss_conf 04689740036--797267999998736049746999999995685589999999524766-4167777--5567-----
Q ss_pred CCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEC-C
Q ss_conf 4100114687-5213001002211001107823010899986307885032018999999999999987338846410-4
Q gi|254781103|r 434 IHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRA-F 511 (598)
Q Consensus 434 ~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a-~ 511 (598)
..-+. ....||.+|+..+..+..+ +.+++.....+.++|.........-.. .
T Consensus 147 -----~~~~~~~~~~ta~d~a~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (265)
T 1n9b_A 147 -----ALPGDARDTTTPASMAATLRKLLTS---------------------QRLSARSQRQLLQWMVDDRVAGPLIRSVL 200 (265)
T ss_dssp -----CCTTCCTTEECHHHHHHHHHHHHHS---------------------SSSCHHHHHHHHHHHHTCSSSHHHHHTTS
T ss_pred -----CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCEECCCCCCCCC
T ss_conf -----8899643543799999999999747---------------------75458899999998745753400001238
Q ss_pred CCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 797357667240351268876688621799999742888-0999999807888888874321467899999999999981
Q gi|254781103|r 512 VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDP-QYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 512 ~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP-~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
-+++.++.||||... . ...++|+.-.++. .|+++|++.++... .....-++++|.+.+..++
T Consensus 201 ~~~~~v~~KTG~~~~--------~--~~~dv~iv~~~~~~~~iv~v~~~~~~~~-------~~~~~~~i~~i~~~l~~~~ 263 (265)
T 1n9b_A 201 PAGWFIADKTGASER--------G--ARGIVALLGPNNKAERIVVIYLRDTPAS-------MAERNQQIAGIGAALIEHW 263 (265)
T ss_dssp CTTCEEEEEEEEETT--------T--EEEEEEEEESTTCCCEEEEEEEESCCCC-------HHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCC--------C--CEEEEEEEEECCCCEEEEEEEECCCCCC-------HHHHHHHHHHHHHHHHHHH
T ss_conf 888768997442788--------8--8028999997999589999994799889-------8999999999999999996
No 33
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Probab=99.41 E-value=1.9e-12 Score=96.57 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=136.4
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCCCC
Q ss_conf 111223023203211121001473111344432322222332456643201235654430---24032044213367632
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNPIK 360 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~~~ 360 (598)
.++.++|..||++++. | + ...|+|.|++|.++++++|+ +|.+++++.+.......
T Consensus 31 ~gv~~~D~~tg~~~~~------n---------------~-d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~ 88 (276)
T 1o7e_A 31 LGVTLLDTASGRRIGH------R---------------Q-DERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADL 88 (276)
T ss_dssp EEEEEEETTTCCEEEE------S---------------T-TSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGC
T ss_pred EEEEEEECCCCCEEEE------C---------------C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHH
T ss_conf 9999998999988777------7---------------9-9752434999999999999988648967563311047560
Q ss_pred CCCCCCCCCCCCCCCCCH----HHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221011234543230039----99855036712354320233-3320011012225763446865421111223355441
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTI----PEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIH 435 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~----~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~ 435 (598)
..+....... .+..+++ +..+..|.|.....+++.+| .+.+..+++++|.... .++.... +
T Consensus 89 ~~~~~~~~~~-~g~~~t~~~ll~~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~~~~~-~~~~~~~------------~ 154 (276)
T 1o7e_A 89 LSHAPVTRRH-AGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVS-RSDRLEP------------E 154 (276)
T ss_dssp CSSCTTGGGG-TTEEEEHHHHHHHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHTCSSC-CCCCCTT------------G
T ss_pred CCCCCCCCCC-CCCCEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC-CCCCCCC------------C
T ss_conf 3689742136-888310999999999856489999999995591689999998264011-2345444------------2
Q ss_pred CEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE-EECCCC
Q ss_conf 001146875-213001002211001107823010899986307885032018999999999999987338846-410479
Q gi|254781103|r 436 SLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSG-RRAFVP 513 (598)
Q Consensus 436 ~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg-~~a~~~ 513 (598)
......|.+ ...||.+|+..+..+.++ ..++++....+.++|......... .....+
T Consensus 155 ~~~~~~~~~~~~tt~~~~a~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (276)
T 1o7e_A 155 LNSFAKGDPRDTTTPAAMAATLQRVVLG---------------------EVLQPASRQQLADWLIDNETGDACLRAGLGK 213 (276)
T ss_dssp GGCCBTTBCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHTCSSCTTTHHHHSCT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 3478899977848499999999999838---------------------8678789999999985683265422245787
Q ss_pred CEEEEEECCEEEECCCCCCCCCCCEEEEEEE--EECCCCEEEEEEEEECC
Q ss_conf 7357667240351268876688621799999--74288809999998078
Q gi|254781103|r 514 GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAV--FPTTDPQYIVLSFMDSP 561 (598)
Q Consensus 514 g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~--~P~~dP~~~v~V~v~~p 561 (598)
+++++.||||.. .+ ..-.+|+ .+-++.+|+++|++..+
T Consensus 214 ~~~v~~KtG~~~--------~~--~~~d~giv~~~~~g~~~iiaV~~~~~ 253 (276)
T 1o7e_A 214 RWRVGDKTGSNG--------ED--ARNDIAVLWPVAGGAPWVLTAYLQAG 253 (276)
T ss_dssp TEEEEEEEEECS--------SS--EEEEEEEEEETTSSCCEEEEEEEECT
T ss_pred CCEEEEEECCCC--------CC--CEEEEEEEEECCCCCEEEEEEEECCC
T ss_conf 765767614257--------78--63569999965899679999994799
No 34
>3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A
Probab=99.40 E-value=5.8e-12 Score=93.45 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=140.0
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE-EC
Q ss_conf 44210011323431112230232032111210014731113444323222223324566432012356544302403-20
Q gi|254781103|r 271 ELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLF-TV 349 (598)
Q Consensus 271 ~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i-~~ 349 (598)
.|.+..+.++++- ++.++|..||++++. |+ ...|+|+|++|.++++++|++..- ..
T Consensus 5 ~l~~l~~~~~~~~-~v~~~D~~tG~~~~~------n~----------------d~~~~~AS~~Kl~~a~~~l~~~~~g~l 61 (265)
T 3m6b_A 5 RFAELERRYDARL-GVYVPATGTTAAIEY------RA----------------DERFAFCSTFKAPLVAAVLHQNPLTHL 61 (265)
T ss_dssp HHHHHHHHHTCEE-EEEECCCSSCCCEEE------ST----------------TSCEECGGGGHHHHHHHHHHHSCGGGG
T ss_pred HHHHHHHHCCCEE-EEEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999998669869-999999999988998------99----------------973883899999999999985776788
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCC-----CCCCHHHCCCCCCCCCCCCCC
Q ss_conf 44213367-63222101123454323003----999855036712354320233-----332001101222576344686
Q gi|254781103|r 350 KDLFDTRN-PIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMG-----IQGHKEFLYRLGLLSKLETEL 419 (598)
Q Consensus 350 ~~~~~~~~-~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg-----~~~~~~~~~~fG~g~~t~idl 419 (598)
++.+.... ....++..... .+ +..++ +..++..|+|..+..+++.+| .+.+.++++++|+.. +.+.
T Consensus 62 d~~v~~~~~~~~~~~~~~~~-~~-g~~~tv~~ll~~mi~~SdN~Aa~~L~~~~Gg~~~~~~~~n~~~~~lG~~~-t~~~- 137 (265)
T 3m6b_A 62 DKLITYTSDDIRSISPVAQQ-HV-QTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTV-SRLD- 137 (265)
T ss_dssp GCEECCCGGGCCSCCTTGGG-CT-TTCEEHHHHHHHHHHSCCHHHHHHHHHHHCSTGGGHHHHHHHHHHTTCCS-CCCC-
T ss_pred CCEEEECHHHHHCCCCCCCC-CC-CCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-EECC-
T ss_conf 84278549995068985202-58-88514999999999843389999999996896889999999999759864-3613-
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5421111223355441001146875-213001002211001107823010899986307885032018999999999999
Q gi|254781103|r 420 PEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLL 498 (598)
Q Consensus 420 p~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l 498 (598)
... +..... ..+++ ...||.+++..+..+.++ ..+++.....+.++|
T Consensus 138 -~~~-~~~~~~---------~~~~~~~~~t~~~~a~~l~~l~~~---------------------~~~~~~~~~~l~~~~ 185 (265)
T 3m6b_A 138 -AEE-PELNRD---------PPGDERDTTTPHAIALVLQQLVLG---------------------NALPPDKRALLTDWM 185 (265)
T ss_dssp -CCT-TGGGCC---------CTTCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHH
T ss_pred -CCC-CCCCCC---------CCCCCCHHHHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHH
T ss_conf -677-665544---------567641022599999999999737---------------------656888999999997
Q ss_pred HHHHCC-CCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 987338-8464104797357667240351268876688621799999742-88809999998078888888743214678
Q gi|254781103|r 499 REGVTG-GSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVA 576 (598)
Q Consensus 499 ~~vv~~-GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~Aa 576 (598)
...... ........+++.++.||||.+. . ...++|++-. +..+|+++|+...|..... . ....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~KtG~~~~--------~--~~~dvgiv~~~~g~~~iiaV~~~~~~~~~~-~----~~~~ 250 (265)
T 3m6b_A 186 ARNTTGAKRIRAGFPADWKVIDKTGTGDY--------G--RANDIAVVWSPTGVPYVVAVMSDRAGGGYD-A----EPRE 250 (265)
T ss_dssp HTCSSCTTTHHHHSCTTSEEEEEEEEETT--------T--EEEEEEEEECTTSCEEEEEEEEECGGGCTT-C----CCCH
T ss_pred HCCEECCCCCCCCCCCCCEEEEEECCCCC--------C--CEEEEEEEECCCCCEEEEEEEECCCCCCCC-H----HHHH
T ss_conf 45887777644567888568887636787--------7--479999999599998999999579988858-8----9999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999981
Q gi|254781103|r 577 PMVGNIIRRSASML 590 (598)
Q Consensus 577 Pi~~~I~~~~~~~~ 590 (598)
.+++++.+.+.++|
T Consensus 251 ~~ia~~ar~v~~~l 264 (265)
T 3m6b_A 251 ALLAEAATCVAGVL 264 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999974
No 35
>3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp}
Probab=99.39 E-value=5.2e-12 Score=93.77 Aligned_cols=250 Identities=16% Similarity=0.142 Sum_probs=148.4
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
++.+.+..++++++ -++.++|.+||++++. | -...|+|.|++|.++++++|+ +|
T Consensus 25 ~~~~~~~~~~~~~~-~gv~~~Dl~tG~~~~~------n----------------~d~~~p~AS~~Kl~~~~~~l~~i~~g 81 (290)
T 3p09_A 25 DDSFKNLENKYDGK-IGIYTLNTDDKTNIKY------N----------------ESYHFPICSVFKFLLVGAILDYDMHN 81 (290)
T ss_dssp HHHHHHHHHHHCSE-EEEEEECC----CCEE------S----------------TTSCEECGGGHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCE-EEEEEEECCCCCEEEE------C----------------CCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999863983-9999998999988988------8----------------99750426799999999999986548
Q ss_pred CEECCCCCCCCCC-CCCCC-CCCCCCCCCCCCC---CHHHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCC
Q ss_conf 0320442133676-32221-0112345432300---3999855036712354320233-332001101222576344686
Q gi|254781103|r 346 LFTVKDLFDTRNP-IKVGK-HVIHDYHPQNRIL---TIPEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETEL 419 (598)
Q Consensus 346 ~i~~~~~~~~~~~-~~~~~-~~i~~~~~~~g~i---t~~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idl 419 (598)
.+++++.+..... +..++ ........ +... .+..++..|+|.....+...+| .+.+.++++++|... +.++.
T Consensus 82 ~~~l~~~v~i~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~SdN~aa~~L~~~~gg~~~~~~~~~~~g~~~-~~l~~ 159 (290)
T 3p09_A 82 QGFLDKKIPINQDDIGKLGYAPITAKNV-GKTLTISQLNYAAILSDSPASNILVRELGGLQNLNKFIKKLGDND-TIITA 159 (290)
T ss_dssp TTGGGCEEECCHHHHTTCCCCTTGGGCT-TSEEEHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCCS-CBCCC
T ss_pred CCCCCCEEEECHHHHHCCCCCCCEEECC-CCEEHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH-HHCCC
T ss_conf 9776651685299951368875434348-836569999750446782999999999638548999999839723-21267
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54211112233554410011468752130010022110011078230108999863078850320189999999999999
Q gi|254781103|r 420 PEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499 (598)
Q Consensus 420 p~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~ 499 (598)
... .....+. . ...-..||-+|+..+..+..+ ..+++.....+.++|.
T Consensus 160 ~~~---~~~~~~~-~-------~~~n~tTa~dla~ll~~l~~~---------------------~~~~~~~~~~~~~~~~ 207 (290)
T 3p09_A 160 DEP---EINYTQP-H-------SNINKTTPKAITKDIYKLAFG---------------------NILDKKHKDIFIKYLQ 207 (290)
T ss_dssp CTT---GGGCCCT-T-------BCTTEECHHHHHHHHHHHHHS---------------------SSSCHHHHHHHHHHHH
T ss_pred CCC---CCCCCCC-C-------CCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHH
T ss_conf 763---2235789-9-------755634899999999999718---------------------9889899999999984
Q ss_pred HHHCCCC-EEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 8733884-64104797357667240351268876688621799999742-888099999980788888887432146789
Q gi|254781103|r 500 EGVTGGS-GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVAP 577 (598)
Q Consensus 500 ~vv~~GT-g~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaP 577 (598)
....... ......+++.+|.|||+... .+ ..-.+|+.-. +...|+++|+...+..... . .+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~v~~KtG~~~~-------~g--~~~d~giv~~~~g~~yii~V~~~~~~~~~~--~----~~~~ 272 (290)
T 3p09_A 208 DNNTGANRIAFSMPKDWIIGDKTGTCGQ-------YA--ATNDVAIIWPKNQQPIALGILYTNPNDKNA--P----SNEE 272 (290)
T ss_dssp HCCTTTTTGGGGSCTTSEEEEEEEECSS-------TT--CEEEEEEEECTTSCCEEEEEEEECTTCTTC--C----CCHH
T ss_pred CCCCCCCCHHCCCCCCCEEEEEECCCCC-------CC--CEEEEEEEECCCCCEEEEEEECCCCCCCCH--H----HHHH
T ss_conf 3851322110148988779960356567-------87--578999998289987999999068975475--9----9999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999981
Q gi|254781103|r 578 MVGNIIRRSASML 590 (598)
Q Consensus 578 i~~~I~~~~~~~~ 590 (598)
++++|.+.++..+
T Consensus 273 ~ia~i~~~v~~~~ 285 (290)
T 3p09_A 273 IIQQAAKLIANDL 285 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 36
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli}
Probab=99.39 E-value=5.7e-12 Score=93.51 Aligned_cols=242 Identities=18% Similarity=0.190 Sum_probs=146.8
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCC
Q ss_conf 1132343111223023203211121001473111344432322222332456643201235654430---2403204421
Q gi|254781103|r 277 KKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLF 353 (598)
Q Consensus 277 ~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~ 353 (598)
+.+++.- ++.++|..||++++. | + ...|+|.|++|.++++++|+ +|.+++++.+
T Consensus 38 ~~~~g~~-gv~v~Dl~tG~~~~~--------------------n-~-d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v 94 (294)
T 3dw0_A 38 QDFGGSI-GVYAMDTGSGATVSY--------------------R-A-EERFPLCSSFKGFLAAAVLARSQQQAGLLDTPI 94 (294)
T ss_dssp HHHTSEE-EEEEEETTTCCEEEE--------------------S-T-TSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEE
T ss_pred HHCCCEE-EEEEEECCCCCEEEE--------------------C-C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 8619869-999998999988678--------------------8-9-973422559999999999998864998878369
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 336763222101123454323003----9998550367123543202333-32001101222576344686542111122
Q gi|254781103|r 354 DTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLETELPEIQAPSYP 428 (598)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~idlp~e~~g~~p 428 (598)
.........+...-.. ..+..++ +...+..|.|.....+++.+|. +.+.++++++|+.. +.++-... ...+
T Consensus 95 ~i~~~~~~~~s~~~~~-~~g~~~tv~dLl~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~g~~~-~~~~~~~~--~~~~ 170 (294)
T 3dw0_A 95 RYGKNALVPWSPISEK-YLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTT-FRLDRWEL--ELNS 170 (294)
T ss_dssp CCCGGGCCSSCHHHHH-TTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCSS-CBCCCCTT--GGGC
T ss_pred EECHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCHH-HCCCCCCC--CCCC
T ss_conf 9647870379972103-578866799999999973759999999998677516999999807333-20478876--4458
Q ss_pred CCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf 335544100114687-521300100221100110782301089998630788503201899999999999998733884-
Q gi|254781103|r 429 SQWKRIHSLTISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGS- 506 (598)
Q Consensus 429 ~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GT- 506 (598)
...+. .-..||-+|+..+..+..+ +.+++.....+.+.|........
T Consensus 171 ----------~~~~~~~n~~t~~d~a~~l~~l~~~---------------------~~l~~~~~~~~~~~~~~~~~~~~~ 219 (294)
T 3dw0_A 171 ----------AIPGDARDTSSPRAVTESLQKLTLG---------------------SALAAPQRQQFVDWLKGNTTGNHR 219 (294)
T ss_dssp ----------CCTTCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHTCSSCTTT
T ss_pred ----------CCCCCCCCCHHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf ----------8998754515599999999999838---------------------753467899999987257547751
Q ss_pred EEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6410479735766724035126887668862179999974288-809999998078888888743214678999999999
Q gi|254781103|r 507 GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRR 585 (598)
Q Consensus 507 g~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~ 585 (598)
-.....+++.++.|||+... .+. .-.+|+.-.++ ..|+++|++..+.... ..+-.++.+|.+.
T Consensus 220 ~~~~~~~~~~v~~KtG~~~~-------~g~--~~dvgiv~~~~~~~~iiaV~~~~~~~~~-------~~~~~li~~iar~ 283 (294)
T 3dw0_A 220 IRAAVPADWAVGDKTGTCGV-------YGT--ANDYAVVWPTGRAPIVLAVYTRAPNKDD-------KHSEAVIAAAARL 283 (294)
T ss_dssp GGGGSCTTSEEEEEEEECSS-------TTC--EEEEEEEECTTSCCEEEEEEEECSSTTC-------CCCHHHHHHHHHH
T ss_pred HHCCCCCCCEEEEEECCCCC-------CCC--EEEEEEEEECCCCEEEEEEEECCCCCCH-------HHHHHHHHHHHHH
T ss_conf 10148899789987313678-------764--8899999938998799999917999998-------9999999999999
Q ss_pred HHHHCCC
Q ss_conf 9998189
Q gi|254781103|r 586 SASMLGV 592 (598)
Q Consensus 586 ~~~~~~i 592 (598)
++..|+.
T Consensus 284 v~~~l~~ 290 (294)
T 3dw0_A 284 ALEGLGV 290 (294)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
T ss_conf 9999723
No 37
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=99.35 E-value=2.7e-11 Score=89.21 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=137.7
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCCCC-CCC
Q ss_conf 31112230232032111210014731113444323222223324566432012356544302-4032044213367-632
Q gi|254781103|r 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDTRN-PIK 360 (598)
Q Consensus 283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~~~-~~~ 360 (598)
..++.++|..||++++. | + ...|+|.|++|..+++++|++ +...+++.+.... .+.
T Consensus 60 ~~gv~~~D~~tG~~~~~--------------------n-~-d~~~~~AS~~Kl~~~~~~l~~~~~~~Ld~~v~i~~~~~~ 117 (307)
T 1w7f_A 60 KLGIFALDTGTNRTVTY--------------------R-P-DERFAFASTIKALTVGVLLQQKSIEDLNQRITYTRDDLV 117 (307)
T ss_dssp EEEEEEEETTTCCEEEE--------------------S-T-TSCEECGGGHHHHHHHHHHHHCCTGGGGCEECCCTTTCC
T ss_pred EEEEEEEECCCCCEEEE--------------------C-C-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHH
T ss_conf 59999998999988888--------------------8-9-984032789999999999986576776751466388750
Q ss_pred CCCCCCCCCCCCCCCCCHH----HHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2210112345432300399----98550367123543202333-320011012225763446865421111223355441
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTIP----EIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIH 435 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~~----~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~ 435 (598)
.++ .+..... +..++++ -.+..|.|.....|++.+|. +.+..+++.+|+.. +.++-. .+.. +.+...
T Consensus 118 ~~~-~~~~~~~-g~~~tv~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~lg~~~-t~l~~~---~~~~-~~~~~~- 189 (307)
T 1w7f_A 118 NYN-PITEKHV-DTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEV-TNPERF---EPEL-NEVNPG- 189 (307)
T ss_dssp SCC-TTGGGCT-TTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCS-CCCCCC---TTGG-GCCCTT-
T ss_pred CCC-CCCCCCC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC-EECCCC---CCCC-CCCCCC-
T ss_conf 589-7400268-9834499999999846845999999998088378999999759511-635766---7665-678888-
Q ss_pred CEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEECCCCC
Q ss_conf 00114687521300100221100110782301089998630788503201899999999999998733884-64104797
Q gi|254781103|r 436 SLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGS-GRRAFVPG 514 (598)
Q Consensus 436 ~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GT-g~~a~~~g 514 (598)
......||-+|+..+..+..+ ..+++.....+.++|........ .+....++
T Consensus 190 ------~~~~~tt~~~~a~ll~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~ 242 (307)
T 1w7f_A 190 ------ETQDTSTARALATSLQAFALE---------------------DKLPSEKRELLIDWMKRNTTGDALIRAGVPEG 242 (307)
T ss_dssp ------CCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHTCSSCTTTGGGGSCTT
T ss_pred ------CCCCCCCHHHHHHHHHHHHCC---------------------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf ------653434599999999987417---------------------53588999999998752452665444568998
Q ss_pred EEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 357667240351268876688621799999742-888099999980788888887432146789999999999998189
Q gi|254781103|r 515 FEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592 (598)
Q Consensus 515 ~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i 592 (598)
+.++.|||+.+. .. .-++|+.-. +.-+|+++|+...+..... . .-.+.++|.+-++.+|..
T Consensus 243 ~~v~~KTG~~~~--------~~--~~dvgiv~~~~g~~~iivVl~~~~~~~~~---~----~~~lia~iar~~~~~l~~ 304 (307)
T 1w7f_A 243 WEVADKTGAGSY--------GT--RNDIAIIWPPKGDPVVLAVLSSRDKKDAK---Y----DDKLIAEATKVVVKALNM 304 (307)
T ss_dssp CEEEEEEEECST--------TC--EEEEEEEECSSSCCEEEEEEEECSSTTCC---C----CTHHHHHHHHHHHHHC--
T ss_pred CEEEEEEEECCC--------CC--EEEEEEEECCCCCEEEEEEEECCCCCCHH---H----HHHHHHHHHHHHHHHHHH
T ss_conf 568987526588--------70--67899998699988999999279998878---8----999999999999999865
No 38
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Probab=99.33 E-value=1.8e-11 Score=90.42 Aligned_cols=246 Identities=17% Similarity=0.199 Sum_probs=145.0
Q ss_pred HHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEE
Q ss_conf 421001132343111223023203211121001473111344432322222332456643201235654430---24032
Q gi|254781103|r 272 LVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFT 348 (598)
Q Consensus 272 l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~ 348 (598)
+.+-.+.++++ .++.|+|..||++++. |+ ...|+|+|++|.++++++|+ +|.++
T Consensus 8 ~~~~~~~~~g~-~gv~v~Dl~tg~~~~~------n~----------------d~~~~~AS~~Kl~~a~~~l~~i~~g~l~ 64 (265)
T 1bue_A 8 IKNLETDFNGR-IGVYALDTGSGKSFSY------RA----------------NERFPLCSSFKGFLAAAVLKGSQDNRLN 64 (265)
T ss_dssp HHHHHHHHTSE-EEEEEEETTTCCEEEE------ST----------------TSCEECGGGGHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCCE-EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999971987-9999999999988888------99----------------9858738999999999999987618988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCC--CCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 04421336763222101123454323003999----855036712354320233--332001101222576344686542
Q gi|254781103|r 349 VKDLFDTRNPIKVGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMG--IQGHKEFLYRLGLLSKLETELPEI 422 (598)
Q Consensus 349 ~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg--~~~~~~~~~~fG~g~~t~idlp~e 422 (598)
+++.+.........+....... .+..+++++ +|..|.|..+..+++.++ .+.+..+++++|.... .++....
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~-~g~~~t~~~ll~~mi~~SdN~Aa~~l~~~~~g~~~~~~~~~~~~g~~~~-~~~~~~~ 142 (265)
T 1bue_A 65 LNQIVNYNTRSLEFHSPITTKY-KDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDF-RLDRWEL 142 (265)
T ss_dssp TTCEECCTTSCCCSSCHHHHHT-TTTCEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHHTTCSSC-BCCSCTT
T ss_pred CCCEEEEEHHHCCCCCCCEECC-CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf 6653897576603799731226-8971139999999998566799999999844856799999998514432-1246645
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11112233554410011468752130010022110011078230108999863078850320189999999999999873
Q gi|254781103|r 423 QAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV 502 (598)
Q Consensus 423 ~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv 502 (598)
..... ...++.-..||.+|+..+..+.++ ..++++....+.++|...-
T Consensus 143 ---~~~~~--------~~~~~~n~tta~d~a~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~~~ 190 (265)
T 1bue_A 143 ---DLNTA--------IPGDERDTSTPAAVAKSLKTLALG---------------------NILSEHEKETYQTWLKGNT 190 (265)
T ss_dssp ---GGGCC--------CTTCCTTEECHHHHHHHHHHHHHS---------------------SSSCHHHHHHHHHHHHTCS
T ss_pred ---CCCCC--------CCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCC
T ss_conf ---45589--------899865520699999999999847---------------------8678889999999983475
Q ss_pred CCCC-EEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3884-64104797357667240351268876688621799999742-888099999980788888887432146789999
Q gi|254781103|r 503 TGGS-GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVAPMVG 580 (598)
Q Consensus 503 ~~GT-g~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~ 580 (598)
.... -.....+++.++.|||+... .+ ....+|+.-. +..+|+++|++..+.... ... .-++.
T Consensus 191 ~~~~~~~~~~~~~~~v~~KtG~~~~-------~g--~~~d~giv~~~~~~~yiiaV~~~~~~~~~---~~~----~~~i~ 254 (265)
T 1bue_A 191 TGAARIRASVPSDWVVGDKTGSCGA-------YG--TANDYAVVWPKNRAPLIISVYTTKNEKEA---KHE----DKVIA 254 (265)
T ss_dssp SCTTTGGGGSCTTSEEEEEEEECSS-------TT--CEEEEEEEECTTSCCEEEEEEEECSCTTC---CCC----HHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCC-------CC--CEEEEEEEECCCCCEEEEEEEECCCCCCH---HHH----HHHHH
T ss_conf 5655322347888768997557777-------77--36899999859998899999946899997---999----99999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999981
Q gi|254781103|r 581 NIIRRSASML 590 (598)
Q Consensus 581 ~I~~~~~~~~ 590 (598)
+|.+.++.++
T Consensus 255 ~ia~~v~~~l 264 (265)
T 1bue_A 255 EASRIAIDNL 264 (265)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
No 39
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=99.33 E-value=2.1e-11 Score=89.93 Aligned_cols=250 Identities=16% Similarity=0.176 Sum_probs=146.5
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
.+.+.+-.++++++- ++.|+|..||++++. |+ ...|+|+|++|.+++.++|+ +|
T Consensus 5 ~~~~~~l~~~~~g~v-gv~v~Dl~tG~~~~~------n~----------------d~~~~~AS~~Kl~~a~~~l~~~~~g 61 (264)
T 3c5a_A 5 AEPFAKLEQDFGGSI-GVYAMDTGSGATVSY------RA----------------EERFPLCSSFKGFLAAAVLARSQQQ 61 (264)
T ss_dssp THHHHHHHHHHTSEE-EEEEEETTTCCEEEE------ST----------------TSCEECGGGHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEE-EEEEEECCCCCEEEE------CC----------------CCEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 899999998739879-999998999988898------89----------------9758428899999999999851530
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCCCCC
Q ss_conf 03204421336763222101123454323003----9998550367123543202333-320011012225763446865
Q gi|254781103|r 346 LFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT----IPEIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLETELP 420 (598)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~idlp 420 (598)
.+++++.+.........+...-. ...+..++ +...+..|.|+.+..++..+|. +....+++++|+.. +.++-+
T Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~-~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~ig~~~~~~~~~~~~g~~~-~~~~~~ 139 (264)
T 3c5a_A 62 AGLLDTPIRYGKNALVPWSPISE-KYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTT-FRLDRW 139 (264)
T ss_dssp TTSTTCEECCCGGGCCSSCHHHH-HTTTTCEEHHHHHHHHHHSCCHHHHHHHHHHTTHHHHHHHHHHHTTCSS-CBCCCC
T ss_pred CCCCCCEEEECHHHCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHH-HCCCCC
T ss_conf 68856517842766147998411-0578871899999764506938999999999579606799999801422-035677
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42111122335544100114687521300100221100110782301089998630788503201899999999999998
Q gi|254781103|r 421 EIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLRE 500 (598)
Q Consensus 421 ~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~ 500 (598)
. ....+..+. ...-..||-+|+.....+.++ +.+++.....+.+.|..
T Consensus 140 ~--~~~~~~~~~---------~~~n~tta~d~~~ll~~l~~~---------------------~~~~~~~~~~~~~~~~~ 187 (264)
T 3c5a_A 140 E--LELNSAIPG---------DARDTSSPRAVTESLQKLTLG---------------------SALAAPQRQQFVDWLKG 187 (264)
T ss_dssp T--TGGGCCCTT---------CCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHHHHHT
T ss_pred C--CCCCCCCCC---------CCCCCHHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHC
T ss_conf 7--755688888---------654513599999999999748---------------------76799999999999735
Q ss_pred HHCCC-CEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 73388-464104797357667240351268876688621799999742-8880999999807888888874321467899
Q gi|254781103|r 501 GVTGG-SGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGINVAPM 578 (598)
Q Consensus 501 vv~~G-Tg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi 578 (598)
..... .-.....+++.++.|||+... ....+++|++-. +...|+++|+...+..... ..--+
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~KtG~~~~---------~g~~~d~giv~~~~~~~yiivV~~~~~~~~~~-------~~~~l 251 (264)
T 3c5a_A 188 NTTGNHRIRAAVPADWAVGDKTGTCGV---------YGTANDYAVVWPTGRAPIVLAVYTRAPNKDDK-------HSEAV 251 (264)
T ss_dssp CSSCTTTGGGGSCTTSEEEEEEEECCG---------GGCEEEEEEEECTTSCCEEEEEEEECSSTTCC-------CCHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCC---------CCCEEEEEEEEECCCCEEEEEEEECCCCCCHH-------HHHHH
T ss_conf 710555445447888668998725588---------87478999998089978999999369998979-------99999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999999818
Q gi|254781103|r 579 VGNIIRRSASMLG 591 (598)
Q Consensus 579 ~~~I~~~~~~~~~ 591 (598)
+.+|.+.++..||
T Consensus 252 i~~is~~v~~~l~ 264 (264)
T 3c5a_A 252 IAAAARLALEGLG 264 (264)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999709
No 40
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1
Probab=99.30 E-value=1.4e-11 Score=90.99 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=141.8
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
|..|.+..+..++ +.++.++|.+||++++. |+ ...++|+|++|.++++++|+ +|
T Consensus 4 ~~~l~~~~~~~~~-~~gv~v~dl~tg~~~~~------n~----------------d~~~~~AS~~Kl~~a~~~l~~~~~g 60 (266)
T 1bsg_A 4 ERRLAGLERASGA-RLGVYAYDTGSGRTVAY------RA----------------DELFPMCSVFKTLSSAAVLRDLDRN 60 (266)
T ss_dssp HHHHHHHHHHHTS-EEEEEEEETTTCCEEEE------ST----------------TSCEECGGGGHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCC-EEEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999987597-49999998999988998------89----------------9805238999999999999998728
Q ss_pred CEECCCCCCCCCCCC-CCCCCC-CCC-CCCCCCCC----HHHHHHCCCCCEEEEEEECCCC-CCCHHHCCCCCCCCCCCC
Q ss_conf 032044213367632-221011-234-54323003----9998550367123543202333-320011012225763446
Q gi|254781103|r 346 LFTVKDLFDTRNPIK-VGKHVI-HDY-HPQNRILT----IPEIFRYSSNIGAAQIADAMGI-QGHKEFLYRLGLLSKLET 417 (598)
Q Consensus 346 ~i~~~~~~~~~~~~~-~~~~~i-~~~-~~~~g~it----~~~al~~S~Nv~~~~i~~~lg~-~~~~~~~~~fG~g~~t~i 417 (598)
.+++++.+.....-. .+.... ... -+.+..+| +..++..|.|+.+-.|+..+|. +.+..+++++|... +.+
T Consensus 61 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~g~~~~~~~~~~~~g~~~-~~~ 139 (266)
T 1bsg_A 61 GEFLSRRILYTQDDVEQADGAPETGKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRV-TRL 139 (266)
T ss_dssp STTTTCEECCCHHHHHHHTCCTTTTSHHHHHHCEEHHHHHHHHHHSCCHHHHHHHHHHHTSTHHHHHHHHHTTCSS-CCC
T ss_pred CCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCC
T ss_conf 9986767996167722467755421010689831399999999998669999999998379368999999960565-303
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 865421111223355441001146875-2130010022110011078230108999863078850320189999999999
Q gi|254781103|r 418 ELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496 (598)
Q Consensus 418 dlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~ 496 (598)
+ ..... +.. ..-|+. ...||-+|+.....+..+ +.+++.....+..
T Consensus 140 ~--~~~~~--~~~--------~~~~~~~~~tta~d~a~ll~~~~~~---------------------~~~~~~~~~~~~~ 186 (266)
T 1bsg_A 140 D--RWEPE--LNS--------AEPGRVTDTTSPRAITRTYGRLVLG---------------------DALNPRDRRLLTS 186 (266)
T ss_dssp C--SCTTG--GGC--------CCTTCCTTEECHHHHHHHHHHHHTS---------------------SSSCHHHHHHHHH
T ss_pred C--CCCCC--CCC--------CCCCCCCCCCCHHHHHHHHHHHHCC---------------------CCCCHHHHHHHHH
T ss_conf 5--76665--567--------8888766625799999999999658---------------------7348889999999
Q ss_pred HHHHHHCCCCEEE-CCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 9998733884641-04797357667240351268876688621799999742-888099999980788888887432146
Q gi|254781103|r 497 LLREGVTGGSGRR-AFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPT-TDPQYIVLSFMDSPKIKERNQLTAGIN 574 (598)
Q Consensus 497 ~l~~vv~~GTg~~-a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~-~dP~~~v~V~v~~p~~~~~~~~~Gg~~ 574 (598)
.|........... ...++..++.|||+.. .... -.+|+.-. +...|+++|+...+.... ...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~--------~~~~--~d~giv~~~~~~~~ii~V~~~~~~~~~---~~~--- 250 (266)
T 1bsg_A 187 WLLANTTSGDRFRAGLPDDWTLGDKTGAGR--------YGTN--NDAGVTWPPGRAPIVLTVLTAKTEQDA---ARD--- 250 (266)
T ss_dssp HHHTCCSCTTTHHHHSCTTSEEEEEEEECS--------TTCE--EEEEEEECTTSCCEEEEEEEECSSTTC---CCC---
T ss_pred HHHCCEECCCCCCCCCCCCCEEEEEEEECC--------CCCE--EEEEEEEECCCCEEEEEEEECCCCCCH---HHH---
T ss_conf 985686466534444788877998862057--------7735--799999918998899999906998776---889---
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 78999999999999818
Q gi|254781103|r 575 VAPMVGNIIRRSASMLG 591 (598)
Q Consensus 575 AaPi~~~I~~~~~~~~~ 591 (598)
.-++.+|.+.+...+|
T Consensus 251 -~~~i~~ia~~v~~~~g 266 (266)
T 1bsg_A 251 -DGLVADAARVLAETLG 266 (266)
T ss_dssp -HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHCC
T ss_conf -9999999999999609
No 41
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=99.27 E-value=1.6e-12 Score=97.10 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=115.1
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CEECCCCCCCCCCCCCC
Q ss_conf 11122302320321112100147311134443232222233245664320123565443024-03204421336763222
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSG-LFTVKDLFDTRNPIKVG 362 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g-~i~~~~~~~~~~~~~~~ 362 (598)
.++.++|..||++++. |+ ...|+|+||+|+++++++|++- ...+++.+..+......
T Consensus 60 ~gv~~~D~~tG~~~~~------n~----------------d~~~~~ASt~Kl~~a~~~l~~v~~g~ld~~v~i~~~~~~~ 117 (266)
T 1alq_A 60 IGVYALDTKSGKEVKF------NS----------------DKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVA 117 (266)
T ss_dssp EEEEEEETTTCCEEEE------ST----------------TSCEECGGGHHHHHHHHHHHSSCGGGTTCEEEECGGGCCS
T ss_pred EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHC
T ss_conf 9999999999988888------89----------------9835347899999999999972047877516753888633
Q ss_pred CCCCCCCCCCCCCCCH----HHHHHCCCCCEEEEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 1011234543230039----99855036712354320233-332001101222576344686542111122335544100
Q gi|254781103|r 363 KHVIHDYHPQNRILTI----PEIFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSL 437 (598)
Q Consensus 363 ~~~i~~~~~~~g~it~----~~al~~S~Nv~~~~i~~~lg-~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~ 437 (598)
+......+. +..+++ ..++..|.|.....+.+.+| ++.+..+++.+|... +.++-. . +...
T Consensus 118 ~~~~~~~~~-g~~~tl~dll~~mi~~SdN~Aa~~L~~~lGg~~~~~~~~~~~G~~~-t~l~~~--~-~~~~--------- 183 (266)
T 1alq_A 118 YSPILEKYV-GKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKV-TNPVRY--E-IELN--------- 183 (266)
T ss_dssp SCTTGGGGT-TEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCS-CCCCCC--T-TGGG---------
T ss_pred CCCCCCCCC-CCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH-EECCCC--C-CCCC---------
T ss_conf 697310468-9723599999987754879999999999776168999999747322-762677--7-6555---------
Q ss_pred ECCCCC-CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCC-CCE
Q ss_conf 114687-521300100221100110782301089998630788503201899999999999998733884641047-973
Q gi|254781103|r 438 TISFGH-GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFV-PGF 515 (598)
Q Consensus 438 ~~~~Gq-g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~-~g~ 515 (598)
....+. ....||.+|+..+..|..+ ..++++..+.+.++|.........-++.+ +|+
T Consensus 184 ~~~~~~~~n~tTa~d~a~ll~~l~~~---------------------~~ls~~~~~~l~~~m~~~~~~~~~l~~~lP~~~ 242 (266)
T 1alq_A 184 YYSPKSKKDTSTPAAFGKTLNKLIAN---------------------GKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDY 242 (266)
T ss_dssp CCCTTCCTTEECHHHHHHHHHHHTTS---------------------SSCCHHHHHHHHHHHHTCGGGTTTHHHHSCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
T ss_conf 67778744444999999999999857---------------------878999999999999639644300554399998
Q ss_pred EEEEECCEEE
Q ss_conf 5766724035
Q gi|254781103|r 516 EVGGKTGTAQ 525 (598)
Q Consensus 516 ~vaGKTGTAq 525 (598)
.||+||||+.
T Consensus 243 ~Va~KTGt~~ 252 (266)
T 1alq_A 243 KVADKSGQAI 252 (266)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEECCCC
T ss_conf 8999650577
No 42
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583}
Probab=99.11 E-value=5.7e-10 Score=80.79 Aligned_cols=228 Identities=19% Similarity=0.196 Sum_probs=132.5
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
.+.|...++.+.+. -++.++|.+||++.+. |+ ...|+|+|++|.++++++|+ +|
T Consensus 38 ~~~~~a~~~~~~g~-~~v~~~dl~tg~~~~~------n~----------------~~~~~~AS~~Kl~~~~~~l~~v~~G 94 (282)
T 3cjm_A 38 NDLLVASVKEFEGT-VGISYLDLETGEQRSV------NG----------------QHEFYTASTIKVPLTMLVADTVASG 94 (282)
T ss_dssp HHHHHHHHHHCSSE-EEEEEEETTTCCEEEE------ST----------------TCCEECGGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCE-EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999717984-9999998999988888------89----------------9842218889999999999999749
Q ss_pred CEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCCC-CCHHHCCCCCCCCCCCCCC
Q ss_conf 0320442133676-3222101123454323003999----85503671235432023333-2001101222576344686
Q gi|254781103|r 346 LFTVKDLFDTRNP-IKVGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGIQ-GHKEFLYRLGLLSKLETEL 419 (598)
Q Consensus 346 ~i~~~~~~~~~~~-~~~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~~-~~~~~~~~fG~g~~t~idl 419 (598)
.+++++.+.+... ...++..+-... .+..+++++ .+..|.|+....+++.+|.. .+...+...|+......
T Consensus 95 ~l~l~~~v~~~~~~~~~~~~~~~~~~-~g~~~sl~dLl~~mi~~SdN~Aan~L~~~lGg~~~~~~~~~~~g~~~~~~~-- 171 (282)
T 3cjm_A 95 QKKWTDLIPYNAEEDYEEGTGIIAYN-IQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDAKAKREMYQRYLHKTPSI-- 171 (282)
T ss_dssp SCCTTCEEECCHHHHCCCSSCSGGGS-CCSEEEHHHHHHHHHHTCCHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCCS--
T ss_pred CCCCCCCEEECHHHHCCCCCCCEEEC-CCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC--
T ss_conf 98877726861899615898625725-898266999999999841269999999982984999999997057668875--
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54211112233554410011468752130010022110011078230108999863078850320189999999999999
Q gi|254781103|r 420 PEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499 (598)
Q Consensus 420 p~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~ 499 (598)
..-..||-+|+..+..+..+. ..+++... +...|.
T Consensus 172 -----------------------~~~~~T~~d~~~ll~~l~~~~---------------------~~~~~~~~-l~~~l~ 206 (282)
T 3cjm_A 172 -----------------------EEPQFSSEDALVILQKLYTEK---------------------ATKPDYQA-IYDSMK 206 (282)
T ss_dssp -----------------------SSCEECHHHHHHHHHHHHHHT---------------------TTCHHHHH-HHHHHH
T ss_pred -----------------------CCCCCCHHHHHHHHHHHHCCC---------------------CCCHHHHH-HHHHHH
T ss_conf -----------------------567778999999999997487---------------------78868999-999984
Q ss_pred HHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 87338846410479735766724035126887668862179999974288809999998078888888743214678999
Q gi|254781103|r 500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV 579 (598)
Q Consensus 500 ~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~ 579 (598)
...... .-.+.++...||.|||+-. .. .-.+|+.-.++| |+++|+...|.. ..+.-++
T Consensus 207 ~~~~~~-~l~~~lp~~~va~KtG~~~---------~~--~~d~giV~~~~~-yiiav~t~~~~~---------~~~~~~i 264 (282)
T 3cjm_A 207 QSVFHE-RMETPTTQGKVAHKIGSYD---------EF--IHDMGILETPHP-FALAIFTKGPDN---------AKSAAFI 264 (282)
T ss_dssp SCSCCC-TTCCTTTTTSEEEEEEEET---------TE--EEEEEEECSSSC-EEEEEEEECSCH---------HHHHHHH
T ss_pred CCCCCC-CHHCCCCCCCEEEEECCCC---------CC--EEEEEEEECCCC-EEEEEEECCCCH---------HHHHHHH
T ss_conf 477873-1102588780686202657---------70--478999957998-899999479980---------7899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254781103|r 580 GNIIRRSASM 589 (598)
Q Consensus 580 ~~I~~~~~~~ 589 (598)
++|.+.+..|
T Consensus 265 ~~is~~iy~~ 274 (282)
T 3cjm_A 265 ASVTDKLWQL 274 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 43
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A
Probab=98.60 E-value=7.7e-10 Score=79.98 Aligned_cols=140 Identities=15% Similarity=0.079 Sum_probs=88.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCC--
Q ss_conf 431112230232032111210014731113444323222223324566432012356544302403204421336763--
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPI-- 359 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~-- 359 (598)
...+++|||..||+||.-- | ....++|+|+.|.+|+..+|++|.+++++.+..+...
T Consensus 7 ~a~~aiv~d~~tG~vL~~k-------------------n--~~~~~~pASlTKlmTa~~~l~~~~l~ld~~vti~~~~~~ 65 (262)
T 1es5_A 7 AAVGGYAMNNGTGTTLYTK-------------------A--ADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSD 65 (262)
T ss_dssp SCSEEEEEETTTCCEEEEE-------------------S--TTCCBCCGGGGHHHHHHHHHTCTTCCTTCEEECCHHHHH
T ss_pred CCCEEEEEECCCCCCHHEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf 6518999999999591126-------------------9--099887788999999999998089998878998476766
Q ss_pred ---CCCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------------CCCHHHCCCCCCCCCCCCCCC
Q ss_conf ---222101123454323003999----8550367123543202333------------320011012225763446865
Q gi|254781103|r 360 ---KVGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------------QGHKEFLYRLGLLSKLETELP 420 (598)
Q Consensus 360 ---~~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------------~~~~~~~~~fG~g~~t~idlp 420 (598)
..++... +-..+..+++++ .|..|.|....-|++.+|. +.+.+.++++|+.. |.+.-|
T Consensus 66 ~~~~~~~s~~--~l~~G~~~tv~dLl~~~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~~lGm~~-T~f~n~ 142 (262)
T 1es5_A 66 YVVANNASQA--HLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHN-THFDSF 142 (262)
T ss_dssp HHHHTTCCCC--CCCTTCEEEHHHHHHHHHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHTTCSS-CBCSSS
T ss_pred HHHCCCCCEE--EECCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf 7640787256--2259989779999999998615699999998538986321209999999999999837865-543046
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHC
Q ss_conf 421111223355441001146875213001002211001107
Q gi|254781103|r 421 EIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINE 462 (598)
Q Consensus 421 ~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~ 462 (598)
.|... .+-..|+-+||.....+..+
T Consensus 143 ---~Gl~~--------------~~n~sTa~Dla~l~~~~l~~ 167 (262)
T 1es5_A 143 ---DGIGN--------------GANYSTPRDLTKIASSAMKN 167 (262)
T ss_dssp ---SCCSC--------------TTCBBCHHHHHHHHHHHTTS
T ss_pred ---CCCCC--------------CCCCCCHHHHHHHHHHHCCC
T ss_conf ---76544--------------57758999999999985126
No 44
>1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A
Probab=98.23 E-value=6.6e-07 Score=61.32 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCC
Q ss_conf 43111223023203211121001473111344432322222332456643201235654430---240320442133676
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNP 358 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~ 358 (598)
..-+++|||..||+||.- +-....++|+|+-|.+|+..+|| +|.+++++.+..+..
T Consensus 16 ~a~aaiv~d~~tG~iL~~---------------------kn~~~~~~~ASlTKlMTa~v~le~i~~g~l~~~~~v~vs~~ 74 (363)
T 1z6f_A 16 DAESYILIDYNSGKVLAE---------------------QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGND 74 (363)
T ss_dssp SEEEEEEEETTTCCEEEE---------------------ESTTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEECCGG
T ss_pred CCEEEEEEECCCCCCHHE---------------------ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHH
T ss_conf 520999999999989000---------------------69099818689999999999999987399985656983389
Q ss_pred CCC-CCCCCCC----CCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf 322-2101123----454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 359 IKV-GKHVIHD----YHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 359 ~~~-~~~~i~~----~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
... ......+ +-..+..+++++ .|..|.|-.++-||+.++. +.+.+.++++|+..
T Consensus 75 a~~~~~~~~~~~s~~~l~~ge~~tv~dLl~~lli~SaNdAA~aLAe~~~Gs~~~Fv~~MN~kA~elG~~~ 144 (363)
T 1z6f_A 75 AWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKN 144 (363)
T ss_dssp GCGGGCGGGTTSCCCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9852366335875113458989999999999876564399999998638999999999999999960566
No 45
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}
Probab=98.22 E-value=7.2e-07 Score=61.10 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=73.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCC-CC
Q ss_conf 43111223023203211121001473111344432322222332456643201235654430240320442133676-32
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNP-IK 360 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~-~~ 360 (598)
..-++|+||..||+||.-- | ....++|+|+-|.+|+..+||++. +++.+..+.. +.
T Consensus 8 ~A~saiv~D~~tG~iL~~k-------------------n--~~~~~~pASlTKlmT~~v~le~~~--l~~~v~vs~~a~~ 64 (334)
T 3mfd_A 8 SAKSAIIIDGASGRVLYAK-------------------D--EHQKRRIASITKIMTAVLAIESGK--MDQTVTVSANAVR 64 (334)
T ss_dssp SCSEEEEEETTTCCEEEEE-------------------S--TTCCBCCGGGGHHHHHHHHHHTTC--TTSEEECCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHC-------------------C--CCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEECHHHHC
T ss_conf 3549999999999890206-------------------9--099895688999999999995889--9986998899943
Q ss_pred CCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf 22101123454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
.++..+ +-..+..+++++ .|..|.|-..+-||+.++. +.+.+.++++|+..
T Consensus 65 ~~~s~~--~l~~g~~~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~ 125 (334)
T 3mfd_A 65 TEGSAI--YLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKN 125 (334)
T ss_dssp CCSSCC--CCCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTT
T ss_pred CCCCEE--EECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 799535--3548987609999999987635779999998726978999999999999958857
No 46
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Probab=98.21 E-value=5.6e-07 Score=61.78 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCCCEECCCCCCCC
Q ss_conf 234311122302320321112100147311134443232222233245664320123565443---02403204421336
Q gi|254781103|r 280 NAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI---DSGLFTVKDLFDTR 356 (598)
Q Consensus 280 ~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL---e~g~i~~~~~~~~~ 356 (598)
+-.+-++||||..||+||.- +-....++|+|+-|.+|+..+| ++|.+++++.+..+
T Consensus 11 ~i~A~saiv~d~~tG~iL~~---------------------kn~~~~~~pASlTKlMTa~v~le~i~~g~i~l~~~v~vs 69 (379)
T 1xp4_A 11 TIAAKHAIAVEANTGKILYE---------------------KDATQPVEIASITKLITVYLVYEALENGSITLSTPVDIS 69 (379)
T ss_dssp CCSBSSEEEEETTTTEEEEE---------------------ESCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECC
T ss_pred CCCCCEEEEEECCCCCEEEE---------------------ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 74445899999999979145---------------------590998878899999999999999876999988479945
Q ss_pred CC-CCCC-CCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCC
Q ss_conf 76-3222-101123454323003999----8550367123543202333------3200110122257
Q gi|254781103|r 357 NP-IKVG-KHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLL 412 (598)
Q Consensus 357 ~~-~~~~-~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g 412 (598)
.. +... +.........+..+++++ .|..|.|-.+.-||+.++. +.+.+.++++|+.
T Consensus 70 ~~~~~~~~~~~~s~~~~~G~~~tv~dLl~~lli~S~NdAA~aLA~~i~Gs~~~Fv~~MN~kA~elGm~ 137 (379)
T 1xp4_A 70 DYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQ 137 (379)
T ss_dssp HHHHHTTTSCCSSCCCCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 89986327865310102786167999999998863788999999982683999999999999980996
No 47
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis}
Probab=98.17 E-value=5.6e-07 Score=61.77 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCC-CCCC
Q ss_conf 431112230232032111210014731113444323222223324566432012356544302403204421336-7632
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTR-NPIK 360 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~-~~~~ 360 (598)
..-++++||..||+||.-- | ....++|+|+-|.+|++.++|+. ++++.+..+ ....
T Consensus 18 ~A~saiv~D~~tG~iL~~k-------------------n--~d~~~~pASlTKlMTa~v~le~~--~~~~~v~~~~~~~~ 74 (276)
T 2bcf_A 18 PAQTWIVADLDSGQVLAGR-------------------D--QNVAHPPASTIKVLLALVALDEL--DLNSTVVADVADTQ 74 (276)
T ss_dssp SCSEEEEEETTTCEEEEEE-------------------S--TTCCBCCGGGHHHHHHHHHHHHC--CTTCEEECCTGGGC
T ss_pred CCCEEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHC--CCCCEEEEEHHHHH
T ss_conf 6408999999999890004-------------------9--29982738999999999999834--78986997445544
Q ss_pred CCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC-----CCCHHHCCCCCCCC
Q ss_conf 22101123454323003999----8550367123543202333-----32001101222576
Q gi|254781103|r 361 VGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI-----QGHKEFLYRLGLLS 413 (598)
Q Consensus 361 ~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~-----~~~~~~~~~fG~g~ 413 (598)
.++..+. . ..+..+++++ .|..|.|....-|++.+|. +.+.+.++++|+..
T Consensus 75 ~~~s~~~-l-~~G~~~tv~dLl~~~lv~S~NdAA~aLA~~~gg~~~Fv~~MN~~A~~lGm~~ 134 (276)
T 2bcf_A 75 AECNCVG-V-KPGRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATS 134 (276)
T ss_dssp CSSCCCC-C-CTTCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTT
T ss_pred HHCEEEE-E-CCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 2210343-2-6998999999998898862377999988875697579999999999849775
No 48
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=97.72 E-value=3e-06 Score=57.15 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCCC
Q ss_conf 3111223023203211121001473111344432322222332456643201235654430---2403204421336763
Q gi|254781103|r 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNPI 359 (598)
Q Consensus 283 ~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~~ 359 (598)
+-++++||.+||+||.-- | ....++|+|+-|++|+..++| +|.+++++.+..+...
T Consensus 70 a~sail~da~tG~iLy~K-------------------N--~d~~~~pASlTKlMTa~l~le~i~~g~l~ld~~vtis~~a 128 (453)
T 3hun_A 70 EPTSAVNVSQTGQLLYQY-------------------N--IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKE 128 (453)
T ss_dssp CCSEEEEEETTSBEEEEE-------------------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHH
T ss_pred CCEEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 761799998999493357-------------------8--4988584499999999999999863798821256689999
Q ss_pred -CCCCC-CCCC-CCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf -22210-1123-454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 360 -KVGKH-VIHD-YHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 360 -~~~~~-~i~~-~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
..++. .... .-..|..+++++ .|..|.|-..+-||+.++. +.+.+.++++|+..
T Consensus 129 ~~~~~~~~~S~~~l~~G~~~tv~dLL~~lli~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~ 195 (453)
T 3hun_A 129 YIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKN 195 (453)
T ss_dssp HHHTTCTTCCCCCCCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCCCCCCEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9852588876214528979889999987677442799999999818989999999999999838988
No 49
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}
Probab=97.70 E-value=1.1e-05 Score=53.69 Aligned_cols=109 Identities=13% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHCCCEECCCCCCCCCC
Q ss_conf 431112230232032111210014731113444323222223324566432012356544---30240320442133676
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMG---IDSGLFTVKDLFDTRNP 358 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaa---Le~g~i~~~~~~~~~~~ 358 (598)
.+-++++||..||+||.-- | ....++|+|+-|++|+..+ |++|.+++++.+..+..
T Consensus 8 ~A~saiv~d~~tG~iL~~k-------------------n--~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~ 66 (344)
T 3a3j_A 8 TAQTYVLMDYNSGAILTAL-------------------N--PDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGES 66 (344)
T ss_dssp CSSEEEEEETTTCCEEEEE-------------------S--TTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTT
T ss_pred CCCEEEEEECCCCCEEHEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHH
T ss_conf 6139999999999690206-------------------9--098885399999999999999997499986788996499
Q ss_pred C-CC---CCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf 3-22---2101123454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 359 I-KV---GKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 359 ~-~~---~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
. .. ++..+ +-..+..+++++ .|..|.|-.++-||+.++. +.+.+.++++|+..
T Consensus 67 ~~~~~~~~~s~~--~l~~ge~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~ 133 (344)
T 3a3j_A 67 AWGRNFPDSSKM--FLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKN 133 (344)
T ss_dssp TCGGGCTTSCCC--CCCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHCCCCCCEE--EECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 985058987325--3348976889999877765138809999998808989999999999999838853
No 50
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=97.70 E-value=9.5e-06 Score=53.99 Aligned_cols=109 Identities=15% Similarity=0.227 Sum_probs=75.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCC
Q ss_conf 43111223023203211121001473111344432322222332456643201235654430---240320442133676
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNP 358 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~ 358 (598)
..-++++||..||+||.-- | ....++|+|+-|++|+..+|| .|.+++++.+..+..
T Consensus 12 ~a~aaiv~d~~tG~iL~~k-------------------n--~~~~~~pASlTKlMTa~v~~e~i~~~~~~l~~~v~vs~~ 70 (352)
T 3ita_A 12 DARAWILMDYASGKVLAEG-------------------N--ADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKD 70 (352)
T ss_dssp CSSEEEEEETTTCCEEEEE-------------------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGG
T ss_pred CEEEEEEEECCCCCCHHHC-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHH
T ss_conf 2159999999999796325-------------------9--099862289999999999999876389997866994699
Q ss_pred CCC-------CCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf 322-------2101123454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 359 IKV-------GKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 359 ~~~-------~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
... ++..+ +-..+..+|+++ .|..|.|-...-||+.++. +.+.+.++++|+..
T Consensus 71 a~~~~~~~~~~~s~~--~l~~g~~~tv~dLL~~~li~SaNdAA~aLA~~i~Gs~~~Fv~~MN~kAkelG~~~ 140 (352)
T 3ita_A 71 AWATGNPALRGSSVM--FLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTN 140 (352)
T ss_dssp GSTTTCGGGTTSSCC--CCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCCCCCCCEE--EECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 985104455687335--4138999999999999887515299999987528999999999999999848998
No 51
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=97.40 E-value=1.7e-05 Score=52.36 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=71.5
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCCC-C
Q ss_conf 111223023203211121001473111344432322222332456643201235654430---240320442133676-3
Q gi|254781103|r 284 VGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRNP-I 359 (598)
Q Consensus 284 gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~~-~ 359 (598)
..+++||..||+||.-- | ....++|+|+-|++|++.+|| +|.+++++.+..+.. +
T Consensus 35 ~~~~vv~~~TG~iLy~K-------------------N--~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~ 93 (369)
T 1tvf_A 35 PTSAVNVSQTGQLLYQY-------------------N--IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEY 93 (369)
T ss_dssp CSEEEEEETTSBEEEEE-------------------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHH
T ss_pred CCEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHH
T ss_conf 63699997899294267-------------------8--09982878999999999999988638988344713579999
Q ss_pred CCCCC-CCCCC-CCCCCCCCHHH----HHHCCCCCEEEEEEECCC------CCCCHHHCCCCCCCC
Q ss_conf 22210-11234-54323003999----855036712354320233------332001101222576
Q gi|254781103|r 360 KVGKH-VIHDY-HPQNRILTIPE----IFRYSSNIGAAQIADAMG------IQGHKEFLYRLGLLS 413 (598)
Q Consensus 360 ~~~~~-~i~~~-~~~~g~it~~~----al~~S~Nv~~~~i~~~lg------~~~~~~~~~~fG~g~ 413 (598)
..... ..... -..+..+++++ .|..|.|-...-||+.++ .+.+.+.++++|+..
T Consensus 94 ~~~~~~~~S~~~l~~G~~~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~ 159 (369)
T 1tvf_A 94 IMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKN 159 (369)
T ss_dssp HHTTCTTSCCCCCCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHCCCCCCCCEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 734587776124438979759999998764477789999998704777999999999999848898
No 52
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Probab=97.37 E-value=0.0027 Score=38.37 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHH---
Q ss_conf 7764421001132343111223023203211121001473111344432322222--33245664320123565443---
Q gi|254781103|r 268 VHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRI--SYGIFEMGSIFKVFTIAMGI--- 342 (598)
Q Consensus 268 ~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra--~~~~yePGStfKp~t~aaaL--- 342 (598)
+++.+.+.+++++-.+.++.| .+.|+|+-...+---| ... +++ -...|+.||+-|+||+++++
T Consensus 6 ld~~i~~~~~~~~vPG~sv~V--~~~g~~v~~~~~G~ad------~~~----~~p~~~dT~f~i~SvSK~fTa~~i~~Lv 73 (447)
T 2qmi_A 6 LESFIVEKMAERKVPGISISI--IKDGDVVYAKGFGYRN------VEA----RLPSTPETIYGIGSITKSFTALAIMKLV 73 (447)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE--EETTEEEEEEEEEEEE------TTT----TEECCSSCBEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEE--EECCEEEEEEEEEEEC------CCC----CCCCCCCCEEECEEHHHHHHHHHHHHHH
T ss_conf 999999999848998799999--9999999998577504------677----9989999979670089999999999999
Q ss_pred HCCCEECCCCCC
Q ss_conf 024032044213
Q gi|254781103|r 343 DSGLFTVKDLFD 354 (598)
Q Consensus 343 e~g~i~~~~~~~ 354 (598)
|+|.+++++.+.
T Consensus 74 e~G~l~lddpv~ 85 (447)
T 2qmi_A 74 EEGGLSLDDPVE 85 (447)
T ss_dssp HTTSCCTTSBGG
T ss_pred HCCCCCCCCCHH
T ss_conf 869999878088
No 53
>3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=47.03 Aligned_cols=225 Identities=19% Similarity=0.192 Sum_probs=113.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCCCCC-CCCCCCCCCHHHHHHCCCCCEE-EEEEECCCC
Q ss_conf 324566432012356544302-40320442133-6763222101123-4543230039998550367123-543202333
Q gi|254781103|r 324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHVIHD-YHPQNRILTIPEIFRYSSNIGA-AQIADAMGI 399 (598)
Q Consensus 324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~i~~-~~~~~g~it~~~al~~S~Nv~~-~~i~~~lg~ 399 (598)
...|..-|+-|||+++.||++ |.-.....+-. |....++.-..-+ -++++ ++--..||.-++=+.- ....++ .
T Consensus 61 ~~~FsiqSisK~f~l~lal~~~G~~~V~~~VG~EPSg~~FNsl~~~e~~~P~N-PmINaGAI~~~sll~~~~~~~~r--~ 137 (315)
T 3czd_A 61 KVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHN-PMVNAGAIVVTSLIKQGVNNAEK--F 137 (315)
T ss_dssp TSCEECGGGGHHHHHHHHHHHHCHHHHHTTSCSSCCSCC---CCCCTTSSCSC-TTSHHHHHHHHHHTTTTSCHHHH--H
T ss_pred CCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCHHHH--H
T ss_conf 88633899999999999998768799999857687888998020003589999-65136899999876068986999--9
Q ss_pred CCCHHHCCCCCCCCCCCCCCC---CC---------------CCCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHHH
Q ss_conf 320011012225763446865---42---------------111122335544100114687-52130010022110011
Q gi|254781103|r 400 QGHKEFLYRLGLLSKLETELP---EI---------------QAPSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAALI 460 (598)
Q Consensus 400 ~~~~~~~~~fG~g~~t~idlp---~e---------------~~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~atiA 460 (598)
+++.++++++-=.+...+|-. .| +.+.++..-...+....=|=| .+.+|..+||.+.+++|
T Consensus 138 ~~il~~~~~lag~~~i~~d~~v~~SE~~t~~rN~alA~~lk~~g~~~~~~D~~~~Ld~Yf~~CSi~vt~~dlA~~aa~LA 217 (315)
T 3czd_A 138 DYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLA 217 (315)
T ss_dssp HHHHHHHHHHTTTCCCEECHHHHHHHHHHCHHHHHHHHHHHHTTCSCTTCCHHHHHHHHHHHHTEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999982999766469999885326399999999999679989999779999999998432357999999999997
Q ss_pred HCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEE
Q ss_conf 078230108999863078850320189999999999999873-3884641047973576672403512688766886217
Q gi|254781103|r 461 NEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFN 539 (598)
Q Consensus 461 N~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~ 539 (598)
|+|+. +...++++++++++.+...|...- -+.+|.-++--|.+ +|+|.+ .
T Consensus 218 n~G~~-------------P~tg~~v~~~~~~~~v~s~M~tcGmYd~SG~fa~~VGlP--aKSGV~--------------G 268 (315)
T 3czd_A 218 NGGFC-------------PITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP--AKSGVA--------------G 268 (315)
T ss_dssp TTTBC-------------TTTCCBCSCHHHHHHHHHHHHHHTTGGGHHHHHHHTCSC--EEECTT--------------S
T ss_pred CCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC--CCCCCC--------------C
T ss_conf 49958-------------998997458999999999987549985477899990882--014766--------------5
Q ss_pred EEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999742888099999980788888887432146789999999999998189
Q gi|254781103|r 540 SFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592 (598)
Q Consensus 540 ~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i 592 (598)
-.++..|- +..++||= |.- ...|.++++=- +++.+...+++
T Consensus 269 gIlavvPg---~~gIav~S--P~L----D~~GNSv~G~~---~~~~ls~~~~l 309 (315)
T 3czd_A 269 GILLVVPN---VMGMMCWS--PPL----DKMGNSVKGIH---FCHDLVSLCNF 309 (315)
T ss_dssp EEEEEETT---TEEEEEEC--SEE----CTTSSBHHHHH---HHHHHHHHHCC
T ss_pred EEEEEECC---CCEEEEEC--CCC----CCCCCCHHHHH---HHHHHHHHHCC
T ss_conf 38999489---70899989--886----88888699999---99999998293
No 54
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=97.20 E-value=0.0013 Score=40.32 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHH
Q ss_conf 25767777764421001132343111223023203211121001473111344432322222--3324566432012356
Q gi|254781103|r 261 DLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRI--SYGIFEMGSIFKVFTI 338 (598)
Q Consensus 261 D~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra--~~~~yePGStfKp~t~ 338 (598)
+..+|++++..+.+. . -|++|++. +.|+|...+ +- ..+... +++ ....|+.||+-|+||+
T Consensus 8 ~~~l~~~l~~~~~~g-----~-pG~~v~v~-~~g~i~~~~-~G------~ad~~~----~~p~t~dT~f~i~SvsK~~ta 69 (349)
T 1yqs_A 8 DTGLQAVLHTALSQG-----A-PGAMVRVD-DNGTIHQLS-EG------VADRAT----GRAITTTDRFRVGSVTKSFSA 69 (349)
T ss_dssp HHHHHHHHHHHHHTT-----C-SEEEEEEE-ETTEEEEEE-EE------BSCTTT----CCBCCTTCBEECGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----C-CEEEEEEE-ECCEEEEEE-EE------EEECCC----CCCCCCCCEEECEEHHHHHHH
T ss_conf 499999999998779-----9-87999999-899999983-78------861677----988999997963047999999
Q ss_pred HHHH---HCCCEECCCCCC
Q ss_conf 5443---024032044213
Q gi|254781103|r 339 AMGI---DSGLFTVKDLFD 354 (598)
Q Consensus 339 aaaL---e~g~i~~~~~~~ 354 (598)
++++ |+|.+++++.+.
T Consensus 70 ~~i~~Lv~~G~l~ldd~v~ 88 (349)
T 1yqs_A 70 VVLLQLVDEGKLDLDASVN 88 (349)
T ss_dssp HHHHHHHHTTSCCTTSBHH
T ss_pred HHHHHHHHCCCCCCCCCCC
T ss_conf 9999999879999888210
No 55
>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A*
Probab=96.88 E-value=0.0013 Score=40.40 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=50.3
Q ss_pred EEEHH-HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 55525-76777776442100113234311122302320321112100147311134443232222233245664320123
Q gi|254781103|r 258 LALDL-RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVF 336 (598)
Q Consensus 258 lTID~-~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~ 336 (598)
.++|. .++..+++.+.+.+++....+++++|+ +.|+|+.--++-.-|. . ...++ .....|..||+-|+|
T Consensus 11 ~~~~~~~l~a~ld~~~~~~~~~~~~pG~~v~V~--~~G~~v~~~~~G~ad~---~--~~~p~---t~~T~f~iaSvtK~~ 80 (392)
T 1ci9_A 11 FSLDAASLAARLDAVFDQALRERRLVGAVAIVA--RHGEILYRRAQGLADR---E--AGRPM---REDTLFRLASVTKPI 80 (392)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTSCSEEEEEEE--ETTEEEEEEEEEEEET---T--TTEEC---CTTCBEECGGGHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--ECCEEEEEEEEEEECC---C--CCCCC---CCCCEEEEEEHHHHH
T ss_conf 688989999999999999998089864999999--9999999984765144---5--59989---999879713179999
Q ss_pred HHHHHH---HCCCEECCCCCC
Q ss_conf 565443---024032044213
Q gi|254781103|r 337 TIAMGI---DSGLFTVKDLFD 354 (598)
Q Consensus 337 t~aaaL---e~g~i~~~~~~~ 354 (598)
|+++++ |+|.+++++.+.
T Consensus 81 ta~~i~~Lve~G~l~ldd~v~ 101 (392)
T 1ci9_A 81 VALAVLRLVARGELALDAPVT 101 (392)
T ss_dssp HHHHHHHHHHHTSSCTTSBGG
T ss_pred HHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999779866777411
No 56
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens}
Probab=96.66 E-value=0.0032 Score=37.89 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
++|..+.+.+.+.+++.+..+.++.|+ +.|+|+. .++-. .+... ..+.. ....|..||+-|+||+++++
T Consensus 3 ~~~~~vd~~i~~~~~~~~~pG~~v~v~--~~g~i~~-~~~G~---~d~~~--~~~~~---~dt~f~iaSisK~~ta~~i~ 71 (358)
T 2qz6_A 3 DIRQVVDSTVEPLMQQQDIAGLSVAVI--QNGKAQY-FNYGV---ANKDS--KQPIT---ENTLFEIGSVSKTFTATLAG 71 (358)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEEE--ETTEEEE-EEEEB---SCTTT--CCBCC---TTCBEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEE-EEEEE---EECCC--CCCCC---CCCEEEEEEHHHHHHHHHHH
T ss_conf 699999999999998479986999999--9999999-85876---00666--98999---99979615478999999999
Q ss_pred ---HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--------------------------------
Q ss_conf ---024032044213367632221011234543230039998550367--------------------------------
Q gi|254781103|r 343 ---DSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSN-------------------------------- 387 (598)
Q Consensus 343 ---e~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~N-------------------------------- 387 (598)
|+|.+++++.+.. .+ .... ......+|+++.|.+.|=
T Consensus 72 ~Lve~g~l~Ld~~v~~--yl--p~~~----~~~~~~ITir~LLshtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~ 143 (358)
T 2qz6_A 72 YALANGKLKLSDPASQ--YL--PALR----GDKFDHISLLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWKPAFAPGTQ 143 (358)
T ss_dssp HHHHTTSCCTTSBGGG--GC--GGGT----TSGGGSSBHHHHHTTCSSCCCSSCC-----CHHHHHHHHHCCCSSCTTTE
T ss_pred HHHHCCCCCCCCCHHH--CC--CCCC----CCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 9997599876670434--07--7442----22457516731435545765335676779999999999738987799944
Q ss_pred -----CEEEEEE---ECCCCCCCHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCC----CC--CCCEECCCC-CCCEE
Q ss_conf -----1235432---023333200110-----1222576344686542111122335----54--410011468-75213
Q gi|254781103|r 388 -----IGAAQIA---DAMGIQGHKEFL-----YRLGLLSKLETELPEIQAPSYPSQW----KR--IHSLTISFG-HGLST 447 (598)
Q Consensus 388 -----v~~~~i~---~~lg~~~~~~~~-----~~fG~g~~t~idlp~e~~g~~p~~~----~~--~~~~~~~~G-qg~~~ 447 (598)
+++..++ +++....+.+++ +.+|+.. |....+.+........+ .. ........| -|+..
T Consensus 144 ~~Ysn~~~~llg~iiE~~tg~~~~~~~~e~i~~PLgm~~-t~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gg~~s 222 (358)
T 2qz6_A 144 RLYSNPSIGLFGHLAAQSLGQPFEKLMEQTVLPKLGLKH-TFISVPETQMSLYAQGYDKAGKPVRVSPGALDAEAYGIKT 222 (358)
T ss_dssp ECCCHHHHHHHHHHHHHTTTSCHHHHHHHTTTGGGTCSS-EESSCCGGGGGGBCCCBCTTSCBCCCCCCTTHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 463453888988999998596988989999745359856-4268984660662200114896555036655655464315
Q ss_pred EHHHCCCCCCHHHHCCEECC
Q ss_conf 00100221100110782301
Q gi|254781103|r 448 TPLQTAVAAAALINEGRLIP 467 (598)
Q Consensus 448 TPlqla~~~atiAN~G~~~~ 467 (598)
|+-+|+.....+.|+|....
T Consensus 223 t~~Dl~~~~~~ll~~~~~~~ 242 (358)
T 2qz6_A 223 STSDLIHYVEVNMHPAKLEK 242 (358)
T ss_dssp CHHHHHHHHHHHHCGGGSCH
T ss_pred CHHHHHHHHHHHHCCCCCCH
T ss_conf 89999999999858997766
No 57
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=96.64 E-value=0.0011 Score=40.77 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.0
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5766724035126887668862179999974288-80999999807888888874321467899999999999981
Q gi|254781103|r 516 EVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 516 ~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
.|-+||||=. ....++||....+ ..|+++++++++.. . .-.+.++++++..|
T Consensus 407 ~v~aKTGTL~-----------~v~aLaGyv~t~~G~~~~Fsi~~N~~~~--------~----~~~r~~~d~i~~~L 459 (462)
T 1w5d_A 407 KVRAKTGSLS-----------TVSSLSGYAETKSGKKLVFSILLNGLID--------E----EDGKDIEDQIAVIL 459 (462)
T ss_dssp TEEEEEEEET-----------TEEEEEEEEECSSSCEEEEEEEEESCSS--------G----GGHHHHHHHHHHHH
T ss_pred EEEEEEEEEC-----------CCEEEEEEEECCCCCEEEEEEEECCCCC--------H----HHHHHHHHHHHHHH
T ss_conf 4999975238-----------9468589999899899999999579997--------5----77899999999998
No 58
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A*
Probab=96.63 E-value=0.0014 Score=40.17 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=37.5
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57667240351268876688621799999742888099999980788888887432146789999999999998189
Q gi|254781103|r 516 EVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592 (598)
Q Consensus 516 ~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i 592 (598)
.|-+||||=. ...+++||....+.+|++++++++.. +. .|-++--+|++.++.+.+-
T Consensus 406 ~v~aKTGTL~-----------~V~sLaGyv~~~~G~l~Fsi~~N~~~--------~~-~~r~~~D~i~~~la~~~~~ 462 (489)
T 1w79_A 406 VVEAKTGTMS-----------GVSALSGYVPGPEGELAFSIVNNGHS--------GP-APLAVQDAIAVRLAEYAGH 462 (489)
T ss_dssp TCEEECCEET-----------TEEEEEEEECCTTCCEEEEEEEECCS--------SS-CCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEEEC-----------CCEEEEEEEECCCCCEEEEEEECCCC--------CH-HHHHHHHHHHHHHHHHCCC
T ss_conf 4999985006-----------94783899996999899999978998--------50-4399999999999864577
No 59
>3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis}
Probab=96.48 E-value=0.0053 Score=36.50 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 77777644210011323431112230232032111210014731113444323222223324566432012356544---
Q gi|254781103|r 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMG--- 341 (598)
Q Consensus 265 Q~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaa--- 341 (598)
++.+++.+.+.+++.+..+.+++|+ +.|+|+.- .|-..+.. ...+. .....|+.||+-|.||+++.
T Consensus 7 ~~~vd~~~~~~~~~~~~~G~~v~v~--~~~~i~~~----~~G~~d~~--~~~~~---~~~t~f~i~SvsK~~Ta~~i~~l 75 (351)
T 3ozh_A 7 SQIVDQYAEHIFYNSGAVGMALVVI--DNNQVVNR----SFGETQPG--NNIRP---RPDSLIRIASITKLMTSEIMVKL 75 (351)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEE--ETTEEEEE----EEECSSTT--CCCCC---CTTCBEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEEE----EEEEECCC--CCCCC---CCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 9999999999998289986999999--99999999----89970167--79899---99996863008999999999999
Q ss_pred HHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30240320442133676322210112345432300399985503671
Q gi|254781103|r 342 IDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNI 388 (598)
Q Consensus 342 Le~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv 388 (598)
.|+|.+++++.+.. .+. ...-.+..+....+|+++.|.+.|=.
T Consensus 76 v~~G~l~ld~~v~~--ylP--~~~~~~~~~~~~~ITi~~LL~htSGl 118 (351)
T 3ozh_A 76 ADDGIVKLTDPLKK--YAP--KGVNVPSYSAKQPIRLLHLASHTSGL 118 (351)
T ss_dssp HHTTSCCTTCBGGG--GSC--TTCCCCCSSTTCCCBHHHHHTTCSCC
T ss_pred HHCCCCCCCCCHHH--CCC--HHHCCCCCCCCCCEEHHHHCCCCCCC
T ss_conf 98699998887201--382--22036776767862789956574799
No 60
>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A
Probab=96.37 E-value=0.0041 Score=37.24 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=45.5
Q ss_pred EEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 55257677777644210011323431112230232032111210014731113444323222223324566432012356
Q gi|254781103|r 259 ALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTI 338 (598)
Q Consensus 259 TID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~ 338 (598)
.||.-+|+.+++ .... |++|++-.+.|+|+---++-.-|..........++ .....|..+|+-|+||+
T Consensus 35 ~id~~~~~~i~~--------~~iP-G~~v~v~~~~G~vvy~~~~G~~~~~~~~~~~~~Pv---t~dT~f~iaSiTK~~Ta 102 (432)
T 3hlc_A 35 LMETAFRKAVES--------RQIP-GAVIMARDASGNLNYTRCFGARTVRRDENNQLPPL---QVDTPCRLASATKLLTT 102 (432)
T ss_dssp HHHHHHHHHHHT--------TSCS-EEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBC---CTTCCEECGGGHHHHHH
T ss_pred HHHHHHHHHHHC--------CCCC-CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCC---CCCCEEECCCHHHHHHH
T ss_conf 999999999981--------8999-66999994699799987462144456654468999---99997961023799999
Q ss_pred HHHH---HCCCEECCCCCC
Q ss_conf 5443---024032044213
Q gi|254781103|r 339 AMGI---DSGLFTVKDLFD 354 (598)
Q Consensus 339 aaaL---e~g~i~~~~~~~ 354 (598)
++++ |+|.+++++.+.
T Consensus 103 ~ai~~Lve~G~L~LddpV~ 121 (432)
T 3hlc_A 103 IMVLQCMERGLVDLDETVD 121 (432)
T ss_dssp HHHHHHHHTTSCCTTSBTT
T ss_pred HHHHHHHHCCCCCCCCCHH
T ss_conf 9999999869988887031
No 61
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes}
Probab=96.32 E-value=0.0068 Score=35.82 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 7677777644210011323431112230232032111210014731113444323222223324566432012356544-
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMG- 341 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaa- 341 (598)
+++..+++.+.+.+++.+..+.++.|+ +.|+++.- .+ .| .+.. ...+. .....|.-||+-|+||+++.
T Consensus 8 ~~~~~~d~~i~~~~~~~~ipG~sv~v~--~~g~~~~~-~~-G~--~d~~--~~~~~---t~~t~f~iaSiSK~~ta~~i~ 76 (359)
T 1zkj_A 8 PLRPVVDASIQPLLKEHRIPGMAVAVL--KDGKAHYF-NY-GV--ANRE--SGAGV---SEQTLFEIGSVSKTLTATLGA 76 (359)
T ss_dssp TTHHHHHHHHHHHHHHTTCSEEEEEEE--ETTEEEEE-EE-EB--SCTT--TCCBC---CTTCBEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEEE-EE-EE--CCCC--CCCCC---CCCCEEEEEEHHHHHHHHHHH
T ss_conf 689999999999998479985999999--99999998-56-20--2156--69989---999989632379999999999
Q ss_pred --HHCCCEECCCCCC
Q ss_conf --3024032044213
Q gi|254781103|r 342 --IDSGLFTVKDLFD 354 (598)
Q Consensus 342 --Le~g~i~~~~~~~ 354 (598)
.|+|.+++++.+.
T Consensus 77 ~lve~G~l~ldd~v~ 91 (359)
T 1zkj_A 77 YAVVKGAMQLDDKAS 91 (359)
T ss_dssp HHHHTTSCCTTSBGG
T ss_pred HHHHCCCCCCCCCCC
T ss_conf 999769977433222
No 62
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A*
Probab=96.19 E-value=0.0086 Score=35.19 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
+++..+++++.+.+++....+.++.| .+.|+|+. .++---| ... ..+. --...|..||+-|+||+++.+
T Consensus 7 ~l~~~vd~~i~~~~~~~~~pG~~v~v--~~~g~~~~-~~~G~~~---~~~--~~p~---t~dT~f~iaSvTK~~ta~~i~ 75 (371)
T 2wzx_A 7 RLKALVDAAVQPVMKANDIPGLAVAI--SLKGEPHY-FSYGLAS---KED--GRRV---TPETLFEIGSVSKTFTATLAG 75 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEE--EETTEEEE-EEEEBSC---TTT--CCBC---CTTCEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE--EECCEEEE-EEEEEEE---CCC--CCCC---CCCCEEECCCHHHHHHHHHHH
T ss_conf 99999999999999848998499999--99999999-8487500---566--9889---999979630468999999999
Q ss_pred ---HCCCEECCCCCC
Q ss_conf ---024032044213
Q gi|254781103|r 343 ---DSGLFTVKDLFD 354 (598)
Q Consensus 343 ---e~g~i~~~~~~~ 354 (598)
|+|.+++++.+.
T Consensus 76 ~lve~G~l~lddpv~ 90 (371)
T 2wzx_A 76 YALTQDKMRLDDRAS 90 (371)
T ss_dssp HHHHTTSCCTTSBGG
T ss_pred HHHHCCCCCCCCCCC
T ss_conf 999869977778622
No 63
>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.03 E-value=0.02 Score=32.81 Aligned_cols=216 Identities=14% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCCE--EEEEEECC
Q ss_conf 324566432012356544302-40320442133-67632221011--23454323003999855036712--35432023
Q gi|254781103|r 324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHVI--HDYHPQNRILTIPEIFRYSSNIG--AAQIADAM 397 (598)
Q Consensus 324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~i--~~~~~~~g~it~~~al~~S~Nv~--~~~i~~~l 397 (598)
...|..-|+-|||+++.||+. |.-.....+-. |....++.-.. .+..+++ +|-=..||.-++=+. .....++
T Consensus 57 ~~~FsIQSiSKpf~~~lAl~~~G~~~V~~~VG~EPSG~~FNsi~Le~~~g~P~N-PmINAGAI~~~sll~~~~~~~~er- 134 (456)
T 3ih8_A 57 DVEFTIQSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNELSLEAESHRPDN-AMINAGALAVHQLLVGPEASRKER- 134 (456)
T ss_dssp TCCEECGGGGHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCBTHHHHTTTTCCSC-TTSHHHHHHHHHHSSCTTCCHHHH-
T ss_pred CCCEECHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCC-CCCCHHHHHHHHHHHCCCCCHHHH-
T ss_conf 996710038999999999998798999987288989999731000456899889-746544999999871689999999-
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCC---CCC---------------CCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCH
Q ss_conf 33320011012225763446865---421---------------11122335544100114687-521300100221100
Q gi|254781103|r 398 GIQGHKEFLYRLGLLSKLETELP---EIQ---------------APSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAA 458 (598)
Q Consensus 398 g~~~~~~~~~~fG~g~~t~idlp---~e~---------------~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~at 458 (598)
.+.+.+++.++. |.+..+|-. .|. .|.++.+- -+....=|=| ++.+|.-+||.+.++
T Consensus 135 -~~~i~~~~~~~a-g~~l~~d~~v~~SE~~t~~rN~AlAy~Lks~g~i~~d~--~~~Ld~Yf~qCSi~vt~~dLA~maat 210 (456)
T 3ih8_A 135 -LDRAVEIMSLLA-GRRLSVDWETYESEMAVSDRNLSLAHMLRSYGVLQDSA--EEIVAGYVAQCAVLVTVKDLAVMGAC 210 (456)
T ss_dssp -HHHHHHHHHHHH-TSCCCBCHHHHHHHHTTCHHHHHHHHHHHHTTSCCSCH--HHHHHHHHHHHTBEECHHHHHHHHHH
T ss_pred -HHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf -999999999846-99876488999998624299999999999789989987--88999999983850669999999999
Q ss_pred HHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCC
Q ss_conf 11078230108999863078850320189999999999999873-38846410479735766724035126887668862
Q gi|254781103|r 459 LINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLN 537 (598)
Q Consensus 459 iAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~ 537 (598)
+||+|+. +...++++++++++.+...|...- -+.+|.-++--|.+ +|+|.+
T Consensus 211 LAN~Gv~-------------P~Tg~~vl~~~~~r~vlsvM~TcGmYD~SG~fa~~VGlP--aKSGVg------------- 262 (456)
T 3ih8_A 211 LATGGIH-------------PMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIP--AKSGVA------------- 262 (456)
T ss_dssp HHTTSBC-------------TTTCCBCSCHHHHHHHHHHHHHHTTGGGHHHHHHHTCCC--EEECTT-------------
T ss_pred HHCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC--EECCCC-------------
T ss_conf 9679959-------------998886568999999999985368862234489980863--101687-------------
Q ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1799999742888099999980788888887432146789999999
Q gi|254781103|r 538 FNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNII 583 (598)
Q Consensus 538 ~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~ 583 (598)
.-.++..|- ++.++||= |.-. ..|.++++=-+-+-+
T Consensus 263 -GGI~avvPg---~~GIav~S--P~LD----~~GNSvrG~~~le~l 298 (456)
T 3ih8_A 263 -GGVLGALPG---RVGIGVFS--PRLD----EVGNSARGVLACRRL 298 (456)
T ss_dssp -SEEEEEETT---TEEEEEEC--CCBC----TTSSBHHHHHHHHHH
T ss_pred -CEEEEEECC---CEEEEEEC--CCCC----CCCCCHHHHHHHHHH
T ss_conf -149999289---63899988--8768----788879999999999
No 64
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426}
Probab=96.00 E-value=0.019 Score=32.96 Aligned_cols=216 Identities=14% Similarity=0.109 Sum_probs=111.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCC-CCC--CCCCCCCCCHHHHHHCCCCCEEEEEEECCC
Q ss_conf 324566432012356544302-40320442133-6763222101-123--454323003999855036712354320233
Q gi|254781103|r 324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHV-IHD--YHPQNRILTIPEIFRYSSNIGAAQIADAMG 398 (598)
Q Consensus 324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~-i~~--~~~~~g~it~~~al~~S~Nv~~~~i~~~lg 398 (598)
...|..-|+-|||+++.||++ |.-.....+-. |....++.-. ..+ -++++ ++-=..||.-++=+.-....++
T Consensus 58 ~~~FsiqSisK~f~~~~al~~~G~~~V~~~VG~ePSg~~FNsl~~le~~~g~P~N-PmINaGAI~~~sll~~~~~~~r-- 134 (308)
T 2pby_A 58 TVKVTLQSISKIIALALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEKPAKPLN-PMINAGALVVTSMIQGGSVSER-- 134 (308)
T ss_dssp TCCEECTTHHHHHHHHHHHHHHHHHHHHHHBCSCC----------------CCBC-TTSHHHHHHHHTTSCSSSHHHH--
T ss_pred CCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCC-CCCCCCHHHHHHHCCCCCHHHH--
T ss_conf 8867689999999999999987989999985768787997145541023899789-6442018898660036883789--
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC---CCC---------------CCCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHH
Q ss_conf 3320011012225763446865---421---------------11122335544100114687-5213001002211001
Q gi|254781103|r 399 IQGHKEFLYRLGLLSKLETELP---EIQ---------------APSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAAL 459 (598)
Q Consensus 399 ~~~~~~~~~~fG~g~~t~idlp---~e~---------------~g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~ati 459 (598)
.+.+.++++++-=.++..+|-. .|. .|.++.+- -+....=|=| .+.+|.-+||.+.+++
T Consensus 135 ~~~il~~~~~lag~~~~~~d~~v~~SE~~t~~rN~Ala~~Lk~~g~i~~d~--~~~Ld~Yf~~Csi~~t~~dLA~~aatL 212 (308)
T 2pby_A 135 LERLLAFVRRLAGNERISYSDEVARSEFETAFLNRSLCYFLKQHRIIDEDV--EELMELYTKQCAIEMTCIDLARIGLVL 212 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCBCHHHHHHHHHHCHHHHHHHHHHHHTTSCCSCH--HHHHHHHHHHHTBEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999999999984899764369999876306399999999998579978899--999999999838522499999999999
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf 1078230108999863078850320189999999999999873-388464104797357667240351268876688621
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF 538 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~ 538 (598)
||+|+. +...++++++++++.+...|...- -+.+|.-++--|.+ +|+|.+
T Consensus 213 An~G~~-------------P~tg~~vi~~~~~r~v~s~M~tcGmYd~SG~fa~~VGlP--aKSGVg-------------- 263 (308)
T 2pby_A 213 ALDGRD-------------PHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIP--AKSGVS-------------- 263 (308)
T ss_dssp HTTTBC-------------TTTCCBSSCHHHHHHHHHHHHHSSSTTCHHHHHHHTCSC--EEECTT--------------
T ss_pred HCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC--CCCCCC--------------
T ss_conf 678948-------------887773368899999999997558842302379980862--112577--------------
Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 79999974288809999998078888888743214678999999
Q gi|254781103|r 539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNI 582 (598)
Q Consensus 539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I 582 (598)
.-.++..|- ++.++||= |.- ...|.++++--+-+-
T Consensus 264 GgIlavvPg---~~gIav~S--P~L----D~~GNSv~G~~~le~ 298 (308)
T 2pby_A 264 GGILAAVPG---RCGIGVFG--PAL----DDKGNSLTGVKLLER 298 (308)
T ss_dssp SEEEEEETT---TEEEEEEC--CCB----CTTSSBHHHHHHHHH
T ss_pred CEEEEEECC---CEEEEEEC--CCC----CCCCCCHHHHHHHHH
T ss_conf 438999579---60899989--886----888886999999999
No 65
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A*
Probab=95.96 E-value=0.032 Score=31.58 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECC
Q ss_conf 52130010022110011078230108999863078850320189999999999999873-38846410479735766724
Q gi|254781103|r 444 GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTG 522 (598)
Q Consensus 444 g~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTG 522 (598)
.+.+|.-+||.+.+++||+|+. +...++++++++++.+..+|...- -+.+|.-|+--|.+ +|+|
T Consensus 209 si~vt~~dLA~~aa~LAN~G~~-------------P~t~~~vl~~~~~r~v~s~M~TcGmYd~SG~fa~~VGlP--aKSG 273 (330)
T 1mki_A 209 AMESTTEDIALIGLILAHDGYH-------------PIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP--AKSG 273 (330)
T ss_dssp TBEECHHHHHHHHHHHHTTTEE-------------TTTTEECSCHHHHHHHHHHHHHHTTGGGHHHHHHHTCSC--EEEC
T ss_pred CCCCCHHHHHHHHHHHHCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCCC
T ss_conf 7225799999999999779958-------------998883168999999999987568502234389983865--0026
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEECCC-------CEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 035126887668862179999974288-------80999999807888888874321467899999999
Q gi|254781103|r 523 TAQKVIKKRYSDTLNFNSFLAVFPTTD-------PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIR 584 (598)
Q Consensus 523 TAq~~~~g~y~~~~~~~~FvG~~P~~d-------P~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~ 584 (598)
.+ .-.++..|..- -.+.++||= |.- ...|.++++--+-+-+.
T Consensus 274 Vg--------------GgIlavvPg~ggi~~~vp~~~gIav~S--P~L----D~~GNSv~G~~~le~ls 322 (330)
T 1mki_A 274 VS--------------GGIMALVPPSARREQPFQSGCGIGIYG--PAI----DEYGNSLTGGMLLKHMA 322 (330)
T ss_dssp TT--------------SEEEEEECTTTTCSSTTTTCEEEEEEC--SCB----CTTSSBHHHHHHHHHHH
T ss_pred CC--------------CEEEEEECCCCCCCCCCCCCEEEEEEC--CCC----CCCCCCHHHHHHHHHHH
T ss_conf 77--------------605999678666454467760699988--876----88888599999999999
No 66
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=95.28 E-value=0.0068 Score=35.82 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=27.4
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCC
Q ss_conf 5766724035126887668862179999974288-809999998078888
Q gi|254781103|r 516 EVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIK 564 (598)
Q Consensus 516 ~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~ 564 (598)
.|.+||||-. ....++||....| ..|+++++++++...
T Consensus 390 ~v~aKTGtL~-----------~v~sLaGyi~~~~G~~~~fsi~~N~~~~~ 428 (453)
T 3a3d_A 390 NVIAKTGSLK-----------GVYNLAGFMTNARGEKVAFVQFINGYSTG 428 (453)
T ss_dssp TCEEEEEEET-----------TEEEEEEEEECTTSCEEEEEEEEESCCSS
T ss_pred EEEEEEECCC-----------CCEEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 4999872637-----------84587999996998999999998599997
No 67
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ...
Probab=95.18 E-value=0.021 Score=32.68 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
++...+++.+.+.+++.+..+.++.| .+.|+|.. .++-. .+.. ...+. --...|+.||+-|+||+++.+
T Consensus 4 ~~~~~i~~~i~~~~~~~~~pG~~v~v--~~~g~~~~-~~~G~---~~~~--~~~~~---t~~T~f~iaS~tK~~ta~~i~ 72 (358)
T 2ffy_A 4 QINDIVHRTITPLIEQQKIPGMAVAV--IYQGKPYY-FTWGY---ADIA--KKQPV---TQQTLFELGSVSKTFTGVLGG 72 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEE--EETTEEEE-EEEEE---EETT--TTEEC---CTTCBEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE--EECCEEEE-EEEEE---CCCC--CCCCC---CCCCEEECHHHHHHHHHHHHH
T ss_conf 89999999999999838998599999--99999999-83864---0366--69889---999979632268999999999
Q ss_pred ---HCCCEECCCCCC
Q ss_conf ---024032044213
Q gi|254781103|r 343 ---DSGLFTVKDLFD 354 (598)
Q Consensus 343 ---e~g~i~~~~~~~ 354 (598)
|+|.+++++.+.
T Consensus 73 ~lve~G~l~ld~pv~ 87 (358)
T 2ffy_A 73 DAIARGEIKLSDPTT 87 (358)
T ss_dssp HHHHTTSCCTTSBHH
T ss_pred HHHHCCCCCCCCCHH
T ss_conf 999769999878645
No 68
>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=94.90 E-value=0.011 Score=34.39 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=27.0
Q ss_pred EEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCC
Q ss_conf 35766724035126887668862179999974288-8099999980788
Q gi|254781103|r 515 FEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPK 562 (598)
Q Consensus 515 ~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~ 562 (598)
-+|.+||||-. .....+||.-..+ ..|++++++.+..
T Consensus 393 g~v~aKTGtl~-----------~v~~laGyv~~~~g~~~~fai~~n~~~ 430 (458)
T 2ex2_A 393 GKVSAKTGSLQ-----------GVYNLAGFITTASGQRMAFVQYLSGYA 430 (458)
T ss_dssp TTEEEEEEEET-----------TEEEEEEEEECTTSCEEEEEEEEESCC
T ss_pred CEEEEEEECCC-----------CCEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 86999555336-----------867989999979989999999966999
No 69
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=94.78 E-value=0.054 Score=30.14 Aligned_cols=214 Identities=19% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEECCCCCCC-CCCCCCCCCC---CCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCC
Q ss_conf 324566432012356544302-40320442133-6763222101---123454323003999855036712354320233
Q gi|254781103|r 324 YGIFEMGSIFKVFTIAMGIDS-GLFTVKDLFDT-RNPIKVGKHV---IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMG 398 (598)
Q Consensus 324 ~~~yePGStfKp~t~aaaLe~-g~i~~~~~~~~-~~~~~~~~~~---i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg 398 (598)
...|..-|+-|||+++.||+. |.-...+.+-. |....++.-. ....++++ ++--.-||..++=+.--...++
T Consensus 59 ~~~FsiqSisK~f~~~lal~~~G~~~V~~~VG~EPSg~~FNsl~~le~~~g~P~N-PmINAGAI~~~sli~~~~~~~r-- 135 (310)
T 1u60_A 59 DYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLS-PLVNAGAIATTSLINAENVEQR-- 135 (310)
T ss_dssp TCCEECGGGHHHHHHHHHHHHHCHHHHHHHTCSCCCSSCTTCHHHHHHTTTCCCC-TTSHHHHHHHHHHSCCSSHHHH--
T ss_pred CCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCHHHH--
T ss_conf 9877089999999999999765989999985768777887336655315899789-5301008898886416881799--
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCEECCCCC-CCEEEHHHCCCCCCHH
Q ss_conf 3320011012225763446865---4211---------------1122335544100114687-5213001002211001
Q gi|254781103|r 399 IQGHKEFLYRLGLLSKLETELP---EIQA---------------PSYPSQWKRIHSLTISFGH-GLSTTPLQTAVAAAAL 459 (598)
Q Consensus 399 ~~~~~~~~~~fG~g~~t~idlp---~e~~---------------g~~p~~~~~~~~~~~~~Gq-g~~~TPlqla~~~ati 459 (598)
.+.+.++++++. |.+..+|-. .|.. |.++.+ .-+....=|=| ++.+|.-+||.+.+++
T Consensus 136 ~~~i~~~~~~~~-g~~l~~d~~v~~SE~~t~~rN~Alay~lk~~g~~~~d--~~~~Ld~Yf~~CSi~vt~~dLA~~aatL 212 (310)
T 1u60_A 136 WQRILHIQQQLA-GEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCD--AMEACDVYTRQCSTLLNTIELATLGATL 212 (310)
T ss_dssp HHHHHHHHHHHH-CTTCEECHHHHHHHHTTCHHHHHHHHHHHHHTCCCSC--HHHHHHHHHHHTTEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999965-9987668899999871539999999999977998889--9999999999852460099999999999
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCE
Q ss_conf 1078230108999863078850320189999999999999873-388464104797357667240351268876688621
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNF 538 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv-~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~ 538 (598)
||+|+- +...++++++++++.+...|...- -+.+|.-++--|.+ +|+|-+
T Consensus 213 AN~Gv~-------------P~t~~~v~~~~~~r~v~s~M~tcGmYd~SG~fa~~VGlP--aKSGVg-------------- 263 (310)
T 1u60_A 213 AAGGVN-------------PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP--GKSGVG-------------- 263 (310)
T ss_dssp HTTSEE-------------TTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHTCSC--EEECTT--------------
T ss_pred HCCCCC-------------CCCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC--CCCCCC--------------
T ss_conf 769938-------------998881078899999999986458742467899990976--114788--------------
Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7999997428880999999807888888874321467899999
Q gi|254781103|r 539 NSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGN 581 (598)
Q Consensus 539 ~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~ 581 (598)
.-.++..|- ++.++||= |.-. ..|.++++--+-+
T Consensus 264 GgI~avvPg---~~gIav~S--P~LD----~~GNSv~G~~~le 297 (310)
T 1u60_A 264 GGILAVVPG---VMGIAAFS--PPLD----EDGNSVRGQKMVA 297 (310)
T ss_dssp SEEEEEETT---TEEEEEEC--SCBC----TTSCBHHHHHHHH
T ss_pred CEEEEEECC---CEEEEEEC--CCCC----CCCCCHHHHHHHH
T ss_conf 438999489---60899989--8879----8888799999999
No 70
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A*
Probab=94.57 E-value=0.026 Score=32.12 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76777776442100113234311122302320321112100147311134443232222233245664320123565443
Q gi|254781103|r 263 RIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI 342 (598)
Q Consensus 263 ~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL 342 (598)
+++..+++.+.+.++. +..++++.| .+.|++..-.++---|. ....++ .....|..||+-|+||+++.+
T Consensus 3 ~l~~~i~~~l~~~~~~-~~~G~sv~v--~~~g~~v~~~~~G~ad~-----~~~~p~---t~dT~f~i~SvtK~~ta~~v~ 71 (363)
T 2drw_A 3 DLNNAIQGILDDHVAR-GVVGVSLAL--CLPGEETSLYQSGYADK-----FNKMPM---TGDHLFRIASCTKSFIATGLH 71 (363)
T ss_dssp HHHHHHHHHHHHHHTT-TCCEEEEEE--ECTTSCEEEEEEEEEET-----TTTEEC---CTTCBEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEE--EECCEEEEEEEEEEECC-----CCCCCC---CCCCEEECEEHHHHHHHHHHH
T ss_conf 3899999999999876-997089999--99999999985788516-----669889---999979630378999999999
Q ss_pred ---HCCCEECCCCCC
Q ss_conf ---024032044213
Q gi|254781103|r 343 ---DSGLFTVKDLFD 354 (598)
Q Consensus 343 ---e~g~i~~~~~~~ 354 (598)
|+|.+++++.+.
T Consensus 72 ~Lve~G~l~Ld~pv~ 86 (363)
T 2drw_A 72 LLVQDGTVDLDEPIT 86 (363)
T ss_dssp HHHHTTSCCTTSBGG
T ss_pred HHHHCCCCCCCCCCC
T ss_conf 999879988888702
No 71
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis}
Probab=92.12 E-value=0.14 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=37.3
Q ss_pred HHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCCCEECC
Q ss_conf 100113234311122302320321112100147311134443232222233245664320123565443---02403204
Q gi|254781103|r 274 ENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI---DSGLFTVK 350 (598)
Q Consensus 274 ~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL---e~g~i~~~ 350 (598)
+.+..+....++++|+.+. | |++-- + + ....|+.||+=|+||+++++ |+|.++++
T Consensus 5 ~~~~~~~~p~~~~~v~~~~-~-~~~~~------------g------d--~dt~f~iaS~tK~~ta~~i~~lve~G~l~Ld 62 (280)
T 3i7j_A 5 EVLGGWPVPAAAAAVIGPA-G-VLATH------------G------D--TARVFALASVTKPLVARAAQVAVEEGVVNLD 62 (280)
T ss_dssp GGGGGSSSSCEEEEEEETT-E-EEEEE------------S------C--TTSCEECGGGHHHHHHHHHHHHHHHTSSCTT
T ss_pred HHHHCCCCCCCCEEEECCC-C-EEEEC------------C------C--CCCEEECHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8875599986644898399-7-88113------------8------9--9888987605999999999999986998899
Q ss_pred CCC
Q ss_conf 421
Q gi|254781103|r 351 DLF 353 (598)
Q Consensus 351 ~~~ 353 (598)
+.+
T Consensus 63 ~pv 65 (280)
T 3i7j_A 63 TPA 65 (280)
T ss_dssp SBC
T ss_pred CCC
T ss_conf 978
No 72
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=87.20 E-value=0.43 Score=24.42 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 13553001000000222220358855356500110467788757788886647---999999999999999
Q gi|254781103|r 21 HNHNMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQKRRRKVIAHSKNR---IGMTIVVCLVIYIIL 88 (598)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~kk~~~~~k~R---i~il~~v~~ii~~il 88 (598)
...+..|..|..++--|. |.=...+++.....+.+..|++.-++.+.+..+| +.+++++++++++++
T Consensus 43 ~ev~~iM~~Ni~kvleRg-ekLe~L~~kSe~L~~~s~~F~k~A~kL~r~mwwrn~K~~ii~~~v~~i~i~i 112 (119)
T 2kog_A 43 DEVVDIMRVNVDKVLERD-QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 112 (119)
T ss_dssp HHHHHHHHHHHHHHHCCC-CSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999801-3799999988888876999999999999999999999999999999999999
No 73
>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1
Probab=80.12 E-value=0.56 Score=23.64 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCC
Q ss_conf 76442100113234311122302320321112100147311134443232222233245664320123565443---024
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGI---DSG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaL---e~g 345 (598)
+..+.+.+++++..++++.| .+.|+|+---++- ..+.....-.+ ....|..||+-|.||+++.+ |+|
T Consensus 10 ~~~i~~~~~~~~vPG~avaV--v~~g~~v~~~~~G------~ad~~~~~p~t--~~T~f~iaSvSK~fTa~~vl~Lve~G 79 (520)
T 1ei5_A 10 EAFVRHIPQNYKGPGGVVAV--VKDGEVVLQHAWG------FADLRTRTPMT--LDTRMPICSVSKQFTCAVLLDAVGEP 79 (520)
T ss_dssp HHHHHTHHHHSCSSEEEEEE--EETTEEEEEEEEE------EEETTTTEECC--TTCCEECGGGHHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHCCCCCEEEEE--EECCEEEEEEEEE------EEECCCCCCCC--CCCEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 99999999857998189999--9999999998277------75067799899--99869717089999999999999749
Q ss_pred CEECCCCC
Q ss_conf 03204421
Q gi|254781103|r 346 LFTVKDLF 353 (598)
Q Consensus 346 ~i~~~~~~ 353 (598)
.+ .++.+
T Consensus 80 ~l-Lddpv 86 (520)
T 1ei5_A 80 EL-LDDAL 86 (520)
T ss_dssp GG-GHHHH
T ss_pred CC-CCCHH
T ss_conf 94-56817
No 74
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A*
Probab=75.97 E-value=3.2 Score=18.82 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=47.7
Q ss_pred EEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHCCCEECCCCCCCCCCCCC
Q ss_conf 112230232032111210014731113444323222223324566432012356544---30240320442133676322
Q gi|254781103|r 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMG---IDSGLFTVKDLFDTRNPIKV 361 (598)
Q Consensus 285 avVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaa---Le~g~i~~~~~~~~~~~~~~ 361 (598)
+++|+ +.|+|+.= .+... ..-...+...|+-|.||.+++ +++|.+++++.+.. .+
T Consensus 84 a~lV~--~~G~iv~E---------~y~~~-------~~~~t~~~~~SvtKs~ta~lig~lv~~G~l~ldd~v~~--yl-- 141 (392)
T 2dcf_A 84 AFLVL--RGTEVVAE---------YYRAG-------FAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTE--YV-- 141 (392)
T ss_dssp EEEEE--ETTEEEEE---------EECTT-------CCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGG--TC--
T ss_pred EEEEE--ECCEEEEE---------ECCCC-------CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCE--EC--
T ss_conf 89999--99999999---------64899-------99788262576799999999999998396554333002--03--
Q ss_pred CCCCCCCCC-CCCCCCCHHHHHHCCCCCEEE
Q ss_conf 210112345-432300399985503671235
Q gi|254781103|r 362 GKHVIHDYH-PQNRILTIPEIFRYSSNIGAA 391 (598)
Q Consensus 362 ~~~~i~~~~-~~~g~it~~~al~~S~Nv~~~ 391 (598)
.++. ...+.+|+++.|..+|-+.+.
T Consensus 142 -----Pe~~~~~~~~iTir~LL~mtsGl~~~ 167 (392)
T 2dcf_A 142 -----PELAGSVYDGPSVLQVLDMQISIDYN 167 (392)
T ss_dssp -----GGGTTSTTSSCBHHHHHTTCBCCSCC
T ss_pred -----HHHCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf -----32214533445498885442788765
No 75
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=75.40 E-value=1.8 Score=20.44 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=23.8
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 03588553565001104677887577888866479
Q gi|254781103|r 40 ESGHNLCQKGCHMEDGQDLFQKRRRKVIAHSKNRI 74 (598)
Q Consensus 40 ~~~~~~~~~~~~~~d~~~~~~~~~kk~~~~~k~Ri 74 (598)
..-.|+++-..++++++.-+++..+...+..+...
T Consensus 53 ~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~~k~~~ 87 (109)
T 3hd7_B 53 RIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999999999999999999999999997340998
No 76
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=41.52 E-value=6.3 Score=16.97 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=33.0
Q ss_pred CCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 530010000002222203588553565001104677887577888866479
Q gi|254781103|r 24 NMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQKRRRKVIAHSKNRI 74 (598)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~kk~~~~~k~Ri 74 (598)
+..|..|..++--|. +.=...+++.....+.+.-|++.-++...+..+|-
T Consensus 18 ~~iM~~Ni~kvl~Rg-ekle~L~~ks~~L~~~s~~F~~~a~~l~~~~ww~~ 67 (91)
T 3hd7_A 18 VDIMRVNVDKVLERD-QKLSELDDRADALQAGASQFETSAAKLKRKYWWKN 67 (91)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999799999812-46889998899999989999999999999999999
No 77
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2vzw_A*
Probab=39.11 E-value=13 Score=15.04 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=33.9
Q ss_pred EEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 5525767777764421001132343111223023203211
Q gi|254781103|r 259 ALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVIS 298 (598)
Q Consensus 259 TID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILA 298 (598)
..|++++.+++..+....+..+++.+++.+.|+.++....
T Consensus 2 a~e~dl~~~l~~il~~~~~~~~a~~~~i~l~d~~~~~~~~ 41 (153)
T 2w3g_A 2 AMDPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHF 41 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEE
T ss_conf 9886799999999999999989998999999478886899
No 78
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=31.26 E-value=20 Score=13.85 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCC-CCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 67777764421001-13234311122302320321112
Q gi|254781103|r 264 IQNIVHQELVENKK-KYNAESVGTVILNVSTGEVISMV 300 (598)
Q Consensus 264 lQ~~~e~~l~~~~~-~~~a~~gavVvmd~~TGeILAma 300 (598)
+-.+++++|..+.+ .+++..-.-|.+|+.||++--..
T Consensus 23 l~~ale~Al~~A~kK~~g~~~~~~V~iD~~tG~i~v~~ 60 (129)
T 2kwp_A 23 IFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
T ss_conf 99999999999998705997647999967899599999
No 79
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat, structural protein; 3.00A {Homo sapiens} SCOP: d.211.2.1
Probab=30.10 E-value=6.9 Score=16.71 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=27.6
Q ss_pred EEEEECCCHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCC
Q ss_conf 1223023203211121---00147311134443232222233245664320123565443024032044
Q gi|254781103|r 286 TVILNVSTGEVISMVS---IPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKD 351 (598)
Q Consensus 286 vVvmd~~TGeILAmas---~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~ 351 (598)
.-++||.||+.+.+.. .--.||........ ...++.+..-|- +=+.+++..|++.|++++..
T Consensus 91 g~iidp~tg~~lsl~eAi~~GlId~~~~~~L~~---~~~a~~g~~dp~-tg~~lsl~eA~~kgli~~~~ 155 (248)
T 1lm7_A 91 GFIVDPVSNLRLPVEEAYKRGLVGIEFKEKLLS---AERAVTGYNDPE-TGNIISLFQAMNKELIEKGH 155 (248)
T ss_dssp SCEEETTTTEEECHHHHHHTTSSCTTTTTTTTT---TTHHHHCEECTT-TCCEECHHHHHTTTSSCHHH
T ss_pred CCCCCCCCCCEEEHHHHHHCCCCCHHHHHHHHH---HHHCCCEEECCC-CCCEECHHHHHHCCCCCCCC
T ss_conf 875366438682099998757745778888887---765136036699-99576199998769706333
No 80
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=27.84 E-value=17 Score=14.22 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC--HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 57677777644210011323431112230232--032111210014731113444
Q gi|254781103|r 262 LRIQNIVHQELVENKKKYNAESVGTVILNVST--GEVISMVSIPDYDPHEAFKGK 314 (598)
Q Consensus 262 ~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~T--GeILAmas~P~~dpn~~~~~~ 314 (598)
..+...++++|.++++.+-+.+.+.|...... +.+.+....-.|+|++++.+.
T Consensus 118 e~~r~al~~~l~~Yv~~hyp~g~~~v~~~~~d~~~~l~i~I~~~k~~p~NFwnGr 172 (286)
T 3aa0_A 118 KQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGR 172 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCE
T ss_conf 8899999999999999868996069970478888359999993656765676854
No 81
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=27.57 E-value=20 Score=13.72 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3214678999999999999818998
Q gi|254781103|r 570 TAGINVAPMVGNIIRRSASMLGVKP 594 (598)
Q Consensus 570 ~Gg~~AaPi~~~I~~~~~~~~~i~P 594 (598)
-|.++..|+++.|++.+...|+.+|
T Consensus 302 iGNAVpp~v~~~I~~~I~~~l~~~p 326 (327)
T 2c7p_A 302 FGNSVVINVLQYIAYNIGSSLNFKP 326 (327)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 7687569999999999999975699
No 82
>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat,, structural protein; 1.80A {Homo sapiens} SCOP: d.211.2.1
Probab=26.47 E-value=3.8 Score=18.37 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCEECCC
Q ss_conf 123565443024032044
Q gi|254781103|r 334 KVFTIAMGIDSGLFTVKD 351 (598)
Q Consensus 334 Kp~t~aaaLe~g~i~~~~ 351 (598)
+.+++..|++.|++.+++
T Consensus 97 ~~lsl~eAi~~Gli~~~~ 114 (214)
T 1lm5_A 97 KKMSAAEAVKEKWLPYEA 114 (214)
T ss_dssp -CCCHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHCCCCCHHH
T ss_conf 653599997558502545
No 83
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=26.02 E-value=24 Score=13.27 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH
Q ss_conf 677777644210011323431112230232032
Q gi|254781103|r 264 IQNIVHQELVENKKKYNAESVGTVILNVSTGEV 296 (598)
Q Consensus 264 lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeI 296 (598)
+|.++++.|....++.....+.+|++|. +|++
T Consensus 77 ~~eA~~~~i~~~~~~~~~~~gGiIavd~-~G~~ 108 (141)
T 1apy_B 77 PTIACQKVISRIQKHFPEFFGAVICANV-TGSY 108 (141)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEEET-TSCE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCE
T ss_conf 9999999999999747997399999908-9989
No 84
>3cwx_A Protein CAGD, HP0525, CAG24; CAG-pathogenicity island, type IV secretion system, T4SS, unknown function; 2.30A {Helicobacter pylori} PDB: 3cwy_A
Probab=24.02 E-value=14 Score=14.77 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=31.2
Q ss_pred CCEEECCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH--------HHH
Q ss_conf 310001466851689536667688674255525767777764421001132343111223023203211--------121
Q gi|254781103|r 230 GIEKFLDMQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVIS--------MVS 301 (598)
Q Consensus 230 GlE~~~d~~g~~~~~~~~~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILA--------mas 301 (598)
-+|+.||+.|+. -|.++..-|++++...-. -+.+...+ +......+.-.|.|||+ ++-
T Consensus 79 miekifdekgke----------mglnveiqinpevkdfft---fksisttn-kqrcflslrgetreilcdnklynmllav 144 (176)
T 3cwx_A 79 MIEKIFDEKGKE----------MGLNVEIQINPEVKDFFT---FKSISTTN-KQRCFLSLRGETREILCDNKLYNMLLAV 144 (176)
T ss_dssp EEEEEC-----C----------CEEEEEEESSTTSTTSEE---EEEEEESS-CEEEEEEETTEEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHHCHH----------CCCEEEEEECCCHHCCEE---EEEECCCC-CCEEEEEECCCCCEEEECCHHHHHHHHH
T ss_conf 999998642410----------172179987820102167---65403466-0126877446602002430889999999
Q ss_pred HCCCCCCCC
Q ss_conf 001473111
Q gi|254781103|r 302 IPDYDPHEA 310 (598)
Q Consensus 302 ~P~~dpn~~ 310 (598)
..+||||+.
T Consensus 145 fnsydpndl 153 (176)
T 3cwx_A 145 FNSYDPNDL 153 (176)
T ss_dssp HTTCCTTCH
T ss_pred HCCCCHHHH
T ss_conf 826884889
No 85
>1c8u_A Acyl-COA thioesterase II; internal repeats, hydrolase; HET: LDA; 1.90A {Escherichia coli} SCOP: d.38.1.3 d.38.1.3
Probab=21.74 E-value=29 Score=12.75 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=3.2
Q ss_pred CHHHHHHHHH
Q ss_conf 0123565443
Q gi|254781103|r 333 FKVFTIAMGI 342 (598)
Q Consensus 333 fKp~t~aaaL 342 (598)
|=-.++|.++
T Consensus 34 fGG~~~A~a~ 43 (285)
T 1c8u_A 34 FGGQVVGQAL 43 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 6899999999
No 86
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=21.36 E-value=30 Score=12.70 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=13.7
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 7644210011323431112230232032111
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISM 299 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAm 299 (598)
|+.|.+....++.-.-+-+++|+.||.=+..
T Consensus 20 e~~Lk~~Fs~FG~I~~v~iv~D~~TG~srG~ 50 (136)
T 2j8a_A 20 DISIKNYFKKYGEISHFEAFNDPNSALPLHV 50 (136)
T ss_dssp HHHHHHHHHTTSCCSEEEEEECTTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
T ss_conf 9999999745898448998787999975469
No 87
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.11 E-value=15 Score=14.53 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=19.4
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCHHHHHHH--HHCCCCCCCCC
Q ss_conf 442100113234311122302320321112--10014731113
Q gi|254781103|r 271 ELVENKKKYNAESVGTVILNVSTGEVISMV--SIPDYDPHEAF 311 (598)
Q Consensus 271 ~l~~~~~~~~a~~gavVvmd~~TGeILAma--s~P~~dpn~~~ 311 (598)
.|.++++....+.|.+-+ |+|-... .+|+|||.++.
T Consensus 25 ll~~ai~~~~dedGW~~l-----g~vG~~l~k~~PdFDpRnYG 62 (105)
T 2kpm_A 25 FVLAALEQSSDDAGWANL-----GNFGNYLNKLQPDFDSRLYG 62 (105)
T ss_dssp HHHHHHHHTBCTTSCEEH-----HHHHHHHHHHCTTCCGGGTT
T ss_pred HHHHHHHHHHCCCCCEEH-----HHHHHHHHHHCCCCCCCCCC
T ss_conf 999999997287664769-----99999998618899961368
No 88
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=20.47 E-value=28 Score=12.81 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 57677777644210011323431112230232032111
Q gi|254781103|r 262 LRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISM 299 (598)
Q Consensus 262 ~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAm 299 (598)
..|+..++..+....+-.+++++++.+.|+.++++..-
T Consensus 25 ~~L~e~l~~i~~~~~~~l~ad~~~i~l~d~~~~~L~~~ 62 (398)
T 1ykd_A 25 NILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSI 62 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEE
T ss_conf 79999999999999999699879999998999989999
Done!