RPSBLAST alignment for GI: 254781103 and conserved domain: TIGR03423

>gnl|CDD|163256 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Length = 592

 Score =  223 bits (572), Expect = 8e-59
 Identities = 147/584 (25%), Positives = 239/584 (40%), Gaps = 123/584 (21%)

Query: 73  RIGMTIVVCLVIYIILAIR-----IIQYGN---------IHPEPIAPSMNIDEYGMSRPD 118
           R  +   + L ++ +LA R     +I+            I   PI P          R  
Sbjct: 2   RALVAGGLVLALFGVLAARLFYLQVIRGEEYATLSEDNRIRLVPIPPP---------RGL 52

Query: 119 IIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRK---LSSETKF 175
           I+DRNG +LA + P+FSL + P KV   D  +++L  +L  LD E I R    L    +F
Sbjct: 53  ILDRNGVLLADNRPSFSLEIVPEKVDDLDATLDRLAKLLD-LDPEDIERFLKELKRSRRF 111

Query: 176 Q--WLRRKLSPQQQKRIL--SFGLPGVGFRLEKSRFYPAASHASHVVGYV-DIDNR---- 226
           +   L+  L+ ++  R     + LPGV       R+YP    A+HV+GYV +I+      
Sbjct: 112 EPIPLKSDLTEEEVARFAVNQYRLPGVEIEARLKRYYPYGELAAHVLGYVGEINEEDLER 171

Query: 227 ------------GITGIEKFLDMQ-----GLTRVFTTNKG----EKNLQP------IRLA 259
                       G +GIEK+ + +     G   V    +G      +  P      + L 
Sbjct: 172 LEPANYAGGDYIGKSGIEKYYEDELRGKPGYREVEVNARGRVIRTLSRVPPVPGKDLVLT 231

Query: 260 LDLRIQNIVHQELVENKKKYNAESVGT-VILNVSTGEVISMVSIPDYDPHEAFKG-KKEG 317
           +D R+Q    + L   +        G  V+++  TGE+++MVS P +DP+    G   + 
Sbjct: 232 IDARLQQAAEKALGGRR--------GAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSKD 283

Query: 318 W-----------FNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVI 366
           W            NR   G++  GS FK F     ++ G+ T +         ++G    
Sbjct: 284 WKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALEEGVITPETRIYCPGYFQLGGRRF 343

Query: 367 HDYHPQNR-ILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAP 425
             +       + + +    S ++   Q+A  +GI    E+  + G   K   +LP  ++ 
Sbjct: 344 RCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSG 403

Query: 426 SYPS-QWKR-------IHSLTISFGHG---LSTTPLQTAVAAAALINEGRLIPPTFM--- 471
             PS +WKR           T++   G   +  TPLQ AVA AAL N G+L  P  +   
Sbjct: 404 LVPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSI 463

Query: 472 ------IRSREESEKVSRIVLKKNTVKTMRSLLREGVT--GGSGRRAFVP-GFEVGGKTG 522
                 +    E E +  + +    +  +R  +R+ V   GG+ RRA +   +++ GKTG
Sbjct: 464 EDPDGGVVQETEPEVLRPLPISPENLDVVREGMRDVVNEPGGTARRARLGLPYKMAGKTG 523

Query: 523 TAQKV------------IKKRYSDTLNFNSFLAVFPTTDPQYIV 554
           TAQ V            I +R  D      F+A  P  +P+  V
Sbjct: 524 TAQVVSLKQGEKYDAEQIPERLRDH---ALFVAFAPYDNPKIAV 564