RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781103|ref|YP_003065516.1| penicillin-binding
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
(598 letters)
>gnl|CDD|31111 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 365 bits (937), Expect = e-101
Identities = 175/600 (29%), Positives = 275/600 (45%), Gaps = 70/600 (11%)
Query: 59 FQKRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPD 118
+K R + + + ++ L+I + ++I+Q + E + R D
Sbjct: 7 KKKGRLFRRRLNLLFLIIFLLFALLILRLFYLQIVQGDDYAKEAANRNQRTVPIPAPRGD 66
Query: 119 IIDRNGEILATDIPTFSLYVEPHKV------ISPDEIIEKLQIVLPNLDSEMIRRKLSSE 172
I DRNG++LAT++P +SL +P K+ + DE+ KL +L +LD + ++L S+
Sbjct: 67 IYDRNGKVLATNVPVYSLTADPRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSK 126
Query: 173 TK-FQWLRRK--LSPQQQKRI--LSFGLPGVGFRLEKSRFYP---AASHASHVVGYVDID 224
++ F L RK L+P+Q RI L LPGV + R+YP ASH + VG ++ D
Sbjct: 127 SRLFTPLARKTNLTPEQAARIAELLLKLPGVDVETDSRRYYPYGELASHVAGYVGKINED 186
Query: 225 NR--------GITGIEKFLDMQ-----GLTRVFTTNKGE----------KNLQPIRLALD 261
G +G+EK D G V +G K+ + ++L +D
Sbjct: 187 ELGRLKNEDIGKSGLEKSYDDVLRGKDGYREVEVDRRGNVIPTLKEVKPKDGKDVQLTID 246
Query: 262 LRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDP-----HEAFKGKKE 316
LR+Q + L + A+ V+L+ TGE+++M S P YDP + + ++
Sbjct: 247 LRLQKAAEEAL-DKAVANKAKGGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRK 305
Query: 317 GWFNRISYGIFEMGSIFKVFTIAMGIDSG---LFTVKDLFDTRNP-IKVGKHVIHDYHPQ 372
NR G +E GS FK T A +++G LF + D P I++ HDY
Sbjct: 306 PLLNRAVTGTYEPGSTFKPITAAAALETGNTGLFDPGSVLDGNGPKIRIWGRTGHDYGG- 364
Query: 373 NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPS--- 429
R LT+ E + SSN+G A++A +G G ++L + G K +LP + PS
Sbjct: 365 -RPLTLTEALQKSSNVGFAKLALRLGPDGLYDYLKKFGFGQKTGIDLPGETSGLLPSREP 423
Query: 430 -QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSRE-------ESEKV 481
+W I T+S G GL TPLQ A A A + N G+L+ P + + E +
Sbjct: 424 WRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVL 483
Query: 482 SRIVLKKNTVKTMRSLLR---EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKK--RYSDTL 536
+ V+ T + +R +R GG+G+ A VPG+ + GKTGTAQK YS
Sbjct: 484 KKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGR 543
Query: 537 NFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596
F+ P +P+Y V +D+P G AP+ I+ R L VKP
Sbjct: 544 YHAWFVGFAPADNPKYAVAVLVDNPGGG-----YGGAVAAPVFKKIMERLLDYLNVKPDA 598
>gnl|CDD|144486 pfam00905, Transpeptidase, Penicillin binding protein
transpeptidase domain. The active site serine is
conserved in all members of this family.
Length = 296
Score = 188 bits (480), Expect = 3e-48
Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 13/303 (4%)
Query: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344
V+L+ TGEV++M P YDP KE NR ++E GS FK+FT +D+
Sbjct: 2 SAVVLDPKTGEVLAMAGKPSYDP----NRDKEPLRNRAVQDVYEPGSTFKIFTALAALDN 57
Query: 345 GLFTVKDLFDTRNPIKVGKHVIHDYH-PQNRILTIPEIFRYSSNIGAAQIADAMGIQGHK 403
G+ ++ FD + VG + I D++ + +T+ E YSSN Q+A +G +
Sbjct: 58 GILKPEETFDDWPGLPVGGYTIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLR 117
Query: 404 EFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINE 462
++L + G +K LP ++ R T ++G G L+ TPLQ A A A + N
Sbjct: 118 DYLKKFGYGNKTGIGLPG-ESAGILPPRYRGDGATTAWGQGSLTITPLQQAQAYATIANN 176
Query: 463 GRLIPPTFM--IRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGK 520
G+L+PP + I+ + + + ++ + K+T + ++ +L+ V G A VPG++V GK
Sbjct: 177 GKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLK-LVVNDGGGAAAVPGYKVAGK 235
Query: 521 TGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVG 580
TGTAQ K Y D F+ P +P+Y +D PK G AP+
Sbjct: 236 TGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDPKGDGG---AGGKVAAPIFK 292
Query: 581 NII 583
+I+
Sbjct: 293 DIL 295
>gnl|CDD|146381 pfam03717, PBP_dimer, Penicillin-binding Protein dimerization
domain. This domain is found at the N terminus of Class
B High Molecular Weight Penicillin-Binding Proteins. Its
function has not been precisely defined, but is strongly
implicated in PBP polymerisation. The domain forms a
largely disordered 'sugar tongs' structure.
Length = 165
Score = 105 bits (263), Expect = 5e-23
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 116 RPDIIDRNGEILATDIPTFSLYVEPHKVISP-DEIIEKLQIVLPNLDSEMIRRKLS---- 170
R +I+DRNG +LAT++P +S+YV+P +V E EKL +L LD E I +KL
Sbjct: 5 RGEILDRNGRVLATNVPVYSVYVDPKEVEDELKETAEKLAKIL-GLDPEEILKKLKEKDA 63
Query: 171 SETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNR---- 226
+ L R LSP++ +I LPGV E R+YP A+HV+GYV N
Sbjct: 64 KSYEPVVLARNLSPEEAAKIKELKLPGVSIEEEPKRYYPYGELAAHVLGYVGEINEEELE 123
Query: 227 -------GITGIEKFLD 236
G +G+EK +
Sbjct: 124 RLPGDRVGKSGLEKQYE 140
>gnl|CDD|31087 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane].
Length = 661
Score = 93.6 bits (232), Expect = 1e-19
Identities = 67/287 (23%), Positives = 108/287 (37%), Gaps = 51/287 (17%)
Query: 256 IRLALDLRIQNIVHQELVEN-KKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGK 314
+ LD +Q + + + K V+++ TG V ++V DY P
Sbjct: 299 VYTTLDPELQEAAEKAVQADPLYKLRDVQAALVLIDPKTGAVRALVGGRDYQPSG----- 353
Query: 315 KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQN- 373
FNR + + GS FK F ++ G T + P+ G ++ P+N
Sbjct: 354 ----FNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDA-PVTYG-----NWSPKNY 403
Query: 374 ------RILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSY 427
+T+ E S NI A ++ +G+ + +LG+ S L
Sbjct: 404 DGRYEGGSVTLREALATSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVP---------- 453
Query: 428 PSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV------ 481
+++ G +PL+ A A A N G PP F IR +++ V
Sbjct: 454 --------GPSLALG-ASEVSPLEMASAYATFANGGTYYPPHF-IRKVTDADGVLYDNPP 503
Query: 482 -SRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQK 526
+ VL M +L+ VT G+G A +PG GKTGT
Sbjct: 504 KVKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKLPGPYAAGKTGTTND 550
>gnl|CDD|34614 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
[Cell envelope biogenesis, outer membrane].
Length = 797
Score = 67.6 bits (165), Expect = 1e-11
Identities = 64/274 (23%), Positives = 105/274 (38%), Gaps = 63/274 (22%)
Query: 287 VILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGL 346
V L+ TG ++++V + + FNR + + + GS FK F + +D G
Sbjct: 424 VSLDPKTGAILALVGGFSFAQSK---------FNRATQALRQPGSSFKPFVYSAALDKG- 473
Query: 347 FTVKDLFDTRNPIKVGKHVIHDYHPQNR------ILTIPEIFRYSSNIGAAQIADAMGIQ 400
T + + + P+N +T+ + S N+ A ++ DA+G+
Sbjct: 474 LTPASVINDAPISFWDGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVD 533
Query: 401 GHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALI 460
E++ R G + ELP L+++ G G TTPLQ A A A
Sbjct: 534 YAAEYIKRFGFYTD---ELP--------------PVLSMALGSG-ETTPLQMARAYAVFA 575
Query: 461 NEGRLIPPTFMIR--------------------------SREESEKVSRI--VLKKNTVK 492
N G+ + P F+ R ++EE V+ T
Sbjct: 576 NGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVIDPMTAY 635
Query: 493 TMRSLLREGVTGGSGRRAFVPG-FEVGGKTGTAQ 525
+ S+LR V G+ RA G ++ GKTGT
Sbjct: 636 QITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTN 669
>gnl|CDD|34561 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein
PbpC [Cell envelope biogenesis, outer membrane].
Length = 733
Score = 51.1 bits (122), Expect = 9e-07
Identities = 71/343 (20%), Positives = 121/343 (35%), Gaps = 55/343 (16%)
Query: 256 IRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKK 315
+ L R++ + S ++++ T EV++ V D+ F +
Sbjct: 271 LDANLQRRLEEQARDYASRLGPR---NSAAVLVVDNRTMEVLAYVGSADF-----FDASR 322
Query: 316 EGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNR- 374
G + + + GS K F + D GL + L P + G DY P+N
Sbjct: 323 SGHID-MVRALRSPGSTLKPFVYGLAFDQGLIHPETLLKDV-PTRFG-----DYRPENFD 375
Query: 375 -----ILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPS 429
+++ E S NI A ++ +A+G L + G+ LPE AP
Sbjct: 376 SNFHGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVHLY----LPEGAAP---- 427
Query: 430 QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKN 489
L++ G G T A AAL N+G+ P + +E+ +L
Sbjct: 428 ------GLSLILG-GAGITLEDLAQLYAALANQGKAGPLRDTLDDDPLTERT---LLSPG 477
Query: 490 TVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD 549
+ +L + G A + KTGT+ Y D + F
Sbjct: 478 AAWQILDILSDVARPGLPNGALPSVRPIAWKTGTSYG-----YRDAWSVGVF-------- 524
Query: 550 PQYIVLSFMDSPKIKERNQLTAGINVAPM---VGNIIRRSASM 589
+Y++ ++ L+ AP+ V NII RS +
Sbjct: 525 GRYVLGVWVGRFDGTPVPGLSGVATAAPLLFQVNNIIARSGRL 567
>gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid
transport and metabolism].
Length = 364
Score = 31.5 bits (71), Expect = 0.73
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 126 ILATDIPTFSLYVEPHK-VISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLR 179
P SL EP ++S DE + L LD + R + ++ + LR
Sbjct: 239 ESMDSFPVESLIPEPLPSLMSADEFLHGL----VKLDQNIEERVKEASSEGKVLR 289
>gnl|CDD|73263 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 653
Score = 31.1 bits (70), Expect = 0.83
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 59 FQKRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPD 118
F K + + I IG T +Y ILA I+ G+I +A D+ +S
Sbjct: 234 FYKDQFEQIEQCFRVIGFTDEEVGSVYRILA-AILNLGDIEFGSVASEHQTDKSRVSNVA 292
Query: 119 IIDRNGEILATDIPTFSLYVEPHKVISPDEII 150
++ +L + H V++ E I
Sbjct: 293 ALENAASLLCIRSDELQEALTSHCVVTRGETI 324
>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic
domain; The ATM catalytic domain subfamily is part of a
larger superfamily that includes the catalytic domains
of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATM is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATM contains a FAT
(FRAP, ATM and TRRAP) domain, a catalytic domain, and a
FATC domain at the C-terminus. ATM is critical in the
response to DNA double strand breaks (DSBs) caused by
radiation. It is activated at the site of a DSB and
phosphorylates key substrates that trigger pathways that
regulate DNA repair and cell cycle checkpoints at the
G1/S, S phase, and G2/M transition. Patients with the
human genetic disorder Ataxia telangiectasia (A-T),
caused by truncating mutations in ATM, show genome
instability, increased cancer risk, immunodeficiency,
compromised mobility, and neurodegeneration. A-T
displays clinical heterogeneity, which is correlated to
the degree of retained ATM activity..
Length = 279
Score = 29.9 bits (68), Expect = 2.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 372 QNRILTIPEI--FRYSSNIGAAQIADAMGIQG 401
Q +IL +PE FR + + I D MGI G
Sbjct: 213 QGKILPVPETVPFRLTRD-----IVDGMGITG 239
>gnl|CDD|144524 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 29.8 bits (68), Expect = 2.2
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 44 NLCQKGCHMEDGQDLFQKRRRKV-----IAHSKNRIGMTIVVCLVIYIILAI 90
L K +++ F+K+ RK+ + K +I + ++V ++I II+ +
Sbjct: 35 ELVDKTENLQSQAQQFRKQARKLKRKMWWKNMKLKIILGLIVLILILIIIIV 86
>gnl|CDD|143914 pfam00144, Beta-lactamase, Beta-lactamase. This family appears to
be distantly related to pfam00905 and PF00768
D-alanyl-D-alanine carboxypeptidase.
Length = 327
Score = 29.0 bits (65), Expect = 3.9
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIF 382
+F + S+ K FT + ++ G + D V K++ +T+ ++
Sbjct: 49 LFRIASVTKTFTAAAVLALVERGKLDLDD--------PVSKYLPEFAGSGKGGVTLRDLL 100
Query: 383 RYSS 386
++S
Sbjct: 101 THTS 104
>gnl|CDD|48199 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded
by the rTS gene which, through alternative RNA splicing,
also encodes rTS alpha whose mRNA is complementary to
thymidylate synthase mRNA. rTS beta expression is
associated with the production of small molecules that
appear to mediate the down-regulation of thymidylate
synthase protein by a novel intercellular signaling
mechanism. A member of this family, from Xanthomonas,
has been characterized to be a L-fuconate dehydratase.
rTS beta belongs to the enolase superfamily of enzymes,
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion..
Length = 415
Score = 29.1 bits (65), Expect = 4.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 160 LDSEMIRRKLSSETKFQWLRRKLSPQQQKRILSFGLPGVGFRLE--KSRFYPAASHASHV 217
L +M +L S F+++ L+P++ IL G PG R + YPA + ++
Sbjct: 133 LLVDMTPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGW 192
Query: 218 VGYVD 222
+GY D
Sbjct: 193 LGYSD 197
>gnl|CDD|176331 cd01255, PH_TIAM, TIAM Pleckstrin homology (PH) domain. TIAM
Pleckstrin homology (PH) domain. TIAM (T-cell invasion
and metastasis) is a guanine nucleotide exchange factor
specific for RAC1. It consists of an N-terminal PH
domain followed by Raf-like ras binding domain(RDB), a
PDZ domain, a RhoGEF (DH) domain and a PH domain. PH
domains share little sequence conservation, but all have
a common fold, which is electrostatically polarized. PH
domains also have diverse functions. They are often
involved in targeting proteins to the plasma membrane,
but few display strong specificity in lipid binding.
Any specificity is usually determined by loop regions or
insertions in the N-terminus of the domain, which are
not conserved across all PH domains. This subfamily
contains the alignment of the PH domain that follows the
DH domain.
Length = 160
Score = 28.7 bits (64), Expect = 4.2
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 405 FLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGR 464
+Y+ L K + +L + + ++ F + T LQ ++AA +
Sbjct: 62 LVYKERL--KQKKKLMGVSRKNATNEVD-----PFRFRVLIPVTALQVRASSAADMESNF 114
Query: 465 LIPPTFMIRSREESEKVSRIVL---------KKNTVKTMRSLLREGV 502
L +I + E E V + +KT+RS+LRE V
Sbjct: 115 LWE---LIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158
>gnl|CDD|30914 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Transcription].
Length = 342
Score = 28.8 bits (64), Expect = 4.8
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 21/104 (20%)
Query: 100 PEPIAPSMN-----IDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQ 154
PE IA + + E + I + I + ++E K +SP++ +E
Sbjct: 208 PEEIAEELGVSPDKVREMLKRASEPISLDTPIGDDEDSELGDFLEDDKSVSPEDAVE--- 264
Query: 155 IVLPNLDSEMIRRKLSSETKFQWLRRKLSPQQQKRI-LSFGLPG 197
R+ E + L L+ ++++ I L FGL
Sbjct: 265 ------------RESLKEDLNEVLAEALTERERRVIRLRFGLDD 296
>gnl|CDD|38006 KOG2795, KOG2795, KOG2795, Catalytic subunit of the meiotic double
strand break transesterase [Replication, recombination
and repair].
Length = 372
Score = 28.7 bits (64), Expect = 5.0
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 179 RRKLSPQQQKRILSFGLPGVGF-RLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDM 237
+ L +Q + S L V R+E A + + NR + D+
Sbjct: 4 AQGLGGRQSLTLNSNDLSAVVLARIEDFVLSVLVQLARPEGFSLSVINRKRSNSLSSPDL 63
Query: 238 QGLTRV--FTTNKGEKNLQPIRLALDLRIQNIVHQELVENK 276
L T + + + A+ LR+ IVH+ L K
Sbjct: 64 DTLVSKSHNTLRFTFSSKKAKKFAILLRVLEIVHELLELGK 104
>gnl|CDD|30609 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and
metabolism].
Length = 485
Score = 27.9 bits (62), Expect = 7.9
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 526 KVIKKRYSDTLNFNSFLAVF--PTTDPQYIVLSFMDSPKIKERNQL--------TAGINV 575
+V+ ++ + L + LAV P+ IVL + K K+ L + GI++
Sbjct: 205 EVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAKKPIALVGKGITFDSGGISI 264
Query: 576 APMVGNIIRRSASMLGVK 593
P +A M +K
Sbjct: 265 KP--------AAGMDTMK 274
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.138 0.401
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,391,283
Number of extensions: 409013
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 26
Length of query: 598
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 499
Effective length of database: 4,124,446
Effective search space: 2058098554
Effective search space used: 2058098554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)