RPSBLAST alignment of GI: 254781103 and protein with PDBid: 1nrf

>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1 Length = 262
 Score =  112 bits (282), Expect = 2e-25
 Identities = 47/330 (14%), Positives = 99/330 (30%), Gaps = 88/330 (26%)

Query: 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY 324
            N+ +++      K++A   G V+ N +  +         Y+  E+              
Sbjct: 17  TNVEYEDYSTFFDKFSASG-GFVLFNSNRKKYTI------YNRKESTSR----------- 58

Query: 325 GIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRY 384
             F   S +KVF+  + ++SG+ T  D   T +         + Y   N+   +      
Sbjct: 59  --FAPASTYKVFSALLALESGIITKNDSHMTWD------GTQYPYKEWNQDQDLFSAMSS 110

Query: 385 SSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG 444
           S+     ++   +G    + +L  +   ++      +   P+    W             
Sbjct: 111 STTWYFQKLDRQIGEDHLRHYLKSIHYGNE------DFSVPA--DYWL---------DGS 153

Query: 445 LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTG 504
           L  +PL+         +       +                     ++T++         
Sbjct: 154 LQISPLEQVNILKKFYDNEFDFKQS--------------------NIETVK--------- 184

Query: 505 GSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIK 564
            S R     G  + GKTGT+    +           F+    T D  +     +   K  
Sbjct: 185 DSIRLEESNGRVLSGKTGTSVINGELHAG------WFIGYVETADNTFFFAVHIQGEKR- 237

Query: 565 ERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
                 AG + A +  +I+ +     G+ P
Sbjct: 238 -----AAGSSAAEIALSILDK----KGIYP 258