RPSBLAST alignment of GI: 254781103 and protein with PDBid: 1vqq
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Length = 646
Score = 180 bits (456), Expect = 1e-45
Identities = 81/523 (15%), Positives = 179/523 (34%), Gaps = 51/523 (9%)
Query: 115 SRPDIIDRNGEILATDIPTFSLYVEPHKVISPD-EIIEKLQIVLPNLDSEMIRRKLSSET 173
R I+DRN LA + + + P V D + I K + + + + + +
Sbjct: 128 ERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDD 187
Query: 174 KFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYV------DIDNRG 227
F L+ + + + +SR YP SH++GYV ++ +
Sbjct: 188 TFVPLKTVKKMDEYLSDFA-KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKE 246
Query: 228 ITGIEKFLDMQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESV--- 284
G + + +K ++ R+ + N + L+E KKK +
Sbjct: 247 YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTI 306
Query: 285 -----------------GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY--- 324
++ TGE++++VS P YD + G +N+++
Sbjct: 307 DAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKK 366
Query: 325 --------GIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPI-----KVGKHVIHDYHP 371
GS K+ T +G+++ K + G + + Y
Sbjct: 367 EPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEV 426
Query: 372 QNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQW 431
N + + + S NI A++A +G + ++ + +LG+ + ++ P A
Sbjct: 427 VNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNL 486
Query: 432 KRIHSLTISF--GHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKN 489
L S + P+Q +AL N G + P + ++ + K + ++ K
Sbjct: 487 DNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWK--KNIISKE 544
Query: 490 TVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD 549
+ + +++ V + + GK+GTA+ +K+ + + + +
Sbjct: 545 NINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETG--RQIGWFISYDKDN 602
Query: 550 PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592
P ++ + + K + + +
Sbjct: 603 PNMMMAINVKDVQDKGMAS-YNAKISGKVYDELYENGNKKYDI 644