RPSBLAST alignment of GI: 254781103 and protein with PDBid: 3oc2
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A* Length = 564
Score = 296 bits (758), Expect = 1e-80
Identities = 144/521 (27%), Positives = 253/521 (48%), Gaps = 40/521 (7%)
Query: 98 IHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVL 157
+ I R I DRNGE LA P +L+ P ++++ E +L L
Sbjct: 38 VRHIAIPAH---------RGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAAL 88
Query: 158 PNLDSEMIRRKL--SSETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHAS 215
D+++ ++ ++E +F +L R L+P+Q + +++ +PGV E RFYPA +
Sbjct: 89 -GQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVA 147
Query: 216 HVVGYVDIDNRGITGIEKFLDMQ-----GLTRVFTTNKGE-----------KNLQPIRLA 259
H VG+ D+D+RG GIE D G +V +G K + + L+
Sbjct: 148 HAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALS 207
Query: 260 LDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWF 319
+DLR+Q + H+EL + A++ VI++V TGE+++M + P Y+P+ +
Sbjct: 208 IDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMR 267
Query: 320 NRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRN-PIKVGKHVIHDYHPQNRILTI 378
NR +FE GS K F+++ + SG + D+ D +++G++ I D +R L +
Sbjct: 268 NRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDL 327
Query: 379 PEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHS 436
I SSN+G ++IA +G + + ++GL P + + P +W + +
Sbjct: 328 TGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAET 387
Query: 437 LTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496
T+++G+GLS T +Q A A AAL N+G+ +P + R + V+ T++
Sbjct: 388 ATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMT---RVDRVPDGVQVISPEVASTVQG 444
Query: 497 LLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVI--KKRYSDTLNFNSFLAVFPTTDPQYI 553
+L++ V G RA VPG+ GK+GTA+KV K Y + + F P TDP+
Sbjct: 445 MLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIA 504
Query: 554 VLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
++ +D P + G+ AP+ ++ + ++ V P
Sbjct: 505 MVVVIDEPS---KAGYFGGLVSAPVFSKVMAGALRLMNVPP 542