RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781103|ref|YP_003065516.1| penicillin-binding
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
(598 letters)
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein
production facility, OPPF, transpe cell WALL
biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB:
3ocl_A* 3ocn_A*
Length = 564
Score = 296 bits (758), Expect = 1e-80
Identities = 144/521 (27%), Positives = 253/521 (48%), Gaps = 40/521 (7%)
Query: 98 IHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVL 157
+ I R I DRNGE LA P +L+ P ++++ E +L L
Sbjct: 38 VRHIAIPAH---------RGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAAL 88
Query: 158 PNLDSEMIRRKL--SSETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHAS 215
D+++ ++ ++E +F +L R L+P+Q + +++ +PGV E RFYPA +
Sbjct: 89 -GQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVA 147
Query: 216 HVVGYVDIDNRGITGIEKFLDMQ-----GLTRVFTTNKGE-----------KNLQPIRLA 259
H VG+ D+D+RG GIE D G +V +G K + + L+
Sbjct: 148 HAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALS 207
Query: 260 LDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWF 319
+DLR+Q + H+EL + A++ VI++V TGE+++M + P Y+P+ +
Sbjct: 208 IDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMR 267
Query: 320 NRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRN-PIKVGKHVIHDYHPQNRILTI 378
NR +FE GS K F+++ + SG + D+ D +++G++ I D +R L +
Sbjct: 268 NRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDL 327
Query: 379 PEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHS 436
I SSN+G ++IA +G + + ++GL P + + P +W + +
Sbjct: 328 TGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAET 387
Query: 437 LTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496
T+++G+GLS T +Q A A AAL N+G+ +P + R + V+ T++
Sbjct: 388 ATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMT---RVDRVPDGVQVISPEVASTVQG 444
Query: 497 LLREGV-TGGSGRRAFVPGFEVGGKTGTAQKVI--KKRYSDTLNFNSFLAVFPTTDPQYI 553
+L++ V G RA VPG+ GK+GTA+KV K Y + + F P TDP+
Sbjct: 445 MLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIA 504
Query: 554 VLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
++ +D P + G+ AP+ ++ + ++ V P
Sbjct: 505 MVVVIDEPS---KAGYFGGLVSAPVFSKVMAGALRLMNVPP 542
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 230 bits (586), Expect = 7e-61
Identities = 100/554 (18%), Positives = 205/554 (37%), Gaps = 81/554 (14%)
Query: 115 SRPDIIDRNGEILATDIPTFSLYVEPHKVISP-------------DEIIEKLQIVLPNLD 161
R I DRNG +A D ++++Y + +++ E L +++
Sbjct: 27 KRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVFHKYL-DME 85
Query: 162 SEMIRRKLSSE----TKFQWLRRKLSPQQ----QKRILSFGLPGVGFRLEKSRFYPAASH 213
+R +LS F ++ +K + + + G+ F +R YP
Sbjct: 86 ESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDFTTSPNRSYPNGQF 145
Query: 214 ASHVVGYVDIDNR--------GITGIEKFLDMQ-----GLTRVFTTNKGE---------- 250
AS +G + G +G+E L+ G+ G
Sbjct: 146 ASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQ 205
Query: 251 --KNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPH 308
+ + + + +Q+ + ++ ++K + + +++ TGE+++ P +D
Sbjct: 206 RTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDAD 265
Query: 309 E-AFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHV-- 365
+ W + + +E GS KV +A ID+ F ++F++ +
Sbjct: 266 TKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRD 325
Query: 366 --IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQ 423
+++ R++T + F +SSN+G + MG ++L R L +
Sbjct: 326 WDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEY 385
Query: 424 APSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIR--------SR 475
A P ++ SFG G+S T Q A A+ N+G ++ P F+ +R
Sbjct: 386 AGQLP-ADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTAR 444
Query: 476 EESEKVSRIVLKKNTVKTMRSLLREGVT----------GGSGRRAFVPGFEVGGKTGTAQ 525
+ +++ + K+ R+ + T VPG V K+GTAQ
Sbjct: 445 KSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQ 504
Query: 526 KVIKKR----YSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGN 581
+K T S +++ P +P +I+ + P+ +GI +
Sbjct: 505 IADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEH------YSGIQLGEFANP 558
Query: 582 IIRRSASMLGVKPV 595
I+ R+++M +
Sbjct: 559 ILERASAMKDSLNL 572
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
division, cell inner membrane, cell membrane, cell
shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB:
3eqv_A*
Length = 542
Score = 210 bits (533), Expect = 9e-55
Identities = 139/503 (27%), Positives = 244/503 (48%), Gaps = 31/503 (6%)
Query: 115 SRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIV-LPNLDSEMIRRKLSSET 173
+R + DRNG +LA PT SL+ P + + ++ L ++ +++R KL +
Sbjct: 35 TRGTVSDRNGAVLALSAPTESLFAVPKDMKEMPSAAQLERLSELVDVPVDVLRNKLEQKG 94
Query: 174 K-FQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIE 232
K F W++R+L P+ + + + GL F E R YP + +HV+G+ DID +G G+E
Sbjct: 95 KSFIWIKRQLDPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLE 154
Query: 233 KFLDMQGLTRVFT------------------TNKGEKNLQPIRLALDLRIQNIVHQELVE 274
L+ NK +N + I L+LD RIQ + ++EL +
Sbjct: 155 LSLEDSLYGEDGAEVVLRDRQGNIVDSLDSPRNKAPQNGKDIILSLDQRIQTLAYEELNK 214
Query: 275 NKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFK 334
+ + A++ V+L+ TGE++++ + P YDP+ + E NR + E GS K
Sbjct: 215 AVEYHQAKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIK 274
Query: 335 VFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIA 394
F IA +D+G + + +T+ L + I + SSN+G ++++
Sbjct: 275 PFVIAKALDAGKTDLNERLNTQPYKI--GPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLS 332
Query: 395 DAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHSLTISFGHGLSTTPLQT 452
G + +F + LG+ ++ + P A +W+ I T+SFG+GL + LQ
Sbjct: 333 ARFGAEEMYDFYHELGIGVRMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQL 392
Query: 453 AVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT-GGSGRRAF 511
A A AL ++G L+P +F ++ + + K++T + +R+L+ GG+G
Sbjct: 393 ARAYTALTHDGVLLPLSFE---KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGA 449
Query: 512 VPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTA 571
V GF+VG KTGTA+K + RY+D + +F+ P +P+ IV +D P +
Sbjct: 450 VDGFDVGAKTGTARKFVNGRYADNKHVATFIGFAPAKNPRVIVAVTIDEPT---AHGYYG 506
Query: 572 GINVAPMVGNIIRRSASMLGVKP 594
G+ P I+ S ++LG+ P
Sbjct: 507 GVVAGPPFKKIMGGSLNILGISP 529
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 195 bits (496), Expect = 2e-50
Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 48/419 (11%)
Query: 206 RFYPAASHASHVVGYVDIDNRGITGIEKFLD--MQG--------LTRVFTTNKGEKNLQP 255
R YP + V G+ + T +E+ D + G F T + +
Sbjct: 68 RVYPNPEVYAPVTGFYSLRY-SSTALERAEDPILNGSDRRLFGRRLADFFTGRDPRGGN- 125
Query: 256 IRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPH------- 308
+ ++ RIQ + + Y V L STG+++++VS P YDP+
Sbjct: 126 VDTTINPRIQQAGWDAM--QQGCYGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNP 183
Query: 309 --------EAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360
NR + GS FKV T A + +G + L
Sbjct: 184 EVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAPTIPL 243
Query: 361 VGKHVIHDYHPQNRI-----LTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKL 415
G + + +++ E F S N Q+ G + GL S
Sbjct: 244 PGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMARAFGLDSPP 303
Query: 416 ETELPEIQAPSYPS-QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRS 474
++ + +T ++ TPL A AA + N G + P +
Sbjct: 304 RPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRPYLVGSL 363
Query: 475 R--------EESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQK 526
+ R + + L+ G + ++ +PG ++ KTGTA+
Sbjct: 364 KGPDLANISTTVGYQQRRAVSPQVAAKLTELMV-GAEKVAQQKGAIPGVQIASKTGTAEH 422
Query: 527 VIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRR 585
R++ ++A P P+ V +++ +R T G AP+ +I
Sbjct: 423 GTDPRHTP--PHAWYIAFAPAQAPKVAVAVLVENG--ADRLSATGGALAAPIGRAVIEA 477
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity;
beta-lactam, D- transpeptidase, D-carboxypeptidase,
biosynthetic protein; 1.80A {Staphylococcus aureus}
SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A*
1mwt_A* 1mwu_A*
Length = 646
Score = 180 bits (456), Expect = 1e-45
Identities = 81/523 (15%), Positives = 179/523 (34%), Gaps = 51/523 (9%)
Query: 115 SRPDIIDRNGEILATDIPTFSLYVEPHKVISPD-EIIEKLQIVLPNLDSEMIRRKLSSET 173
R I+DRN LA + + + P V D + I K + + + + + +
Sbjct: 128 ERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDD 187
Query: 174 KFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYV------DIDNRG 227
F L+ + + + +SR YP SH++GYV ++ +
Sbjct: 188 TFVPLKTVKKMDEYLSDFA-KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKE 246
Query: 228 ITGIEKFLDMQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESV--- 284
G + + +K ++ R+ + N + L+E KKK +
Sbjct: 247 YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTI 306
Query: 285 -----------------GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY--- 324
++ TGE++++VS P YD + G +N+++
Sbjct: 307 DAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKK 366
Query: 325 --------GIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPI-----KVGKHVIHDYHP 371
GS K+ T +G+++ K + G + + Y
Sbjct: 367 EPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEV 426
Query: 372 QNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQW 431
N + + + S NI A++A +G + ++ + +LG+ + ++ P A
Sbjct: 427 VNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNL 486
Query: 432 KRIHSLTISF--GHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKN 489
L S + P+Q +AL N G + P + ++ + K + ++ K
Sbjct: 487 DNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWK--KNIISKE 544
Query: 490 TVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD 549
+ + +++ V + + GK+GTA+ +K+ + + + +
Sbjct: 545 NINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETG--RQIGWFISYDKDN 602
Query: 550 PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592
P ++ + + K + + +
Sbjct: 603 PNMMMAINVKDVQDKGMAS-YNAKISGKVYDELYENGNKKYDI 644
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A
beta-lactamase fold, transcription regulation,
beta-lactamase induction, transcription; 1.80A
{Streptomyces cacaoi}
Length = 318
Score = 116 bits (292), Expect = 1e-26
Identities = 26/322 (8%), Positives = 68/322 (21%), Gaps = 51/322 (15%)
Query: 270 QELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEM 329
+EL + + + ++ ++ TGE + DP
Sbjct: 9 RELRDALHEGGL-TGSFLVRDLYTGEELG------IDPDTEL----------------PT 45
Query: 330 GSIFKVFTIAM---GIDSGLFTVKD-LFDTRNPIKVGKHVIHDYHPQNRILTIPEIFR-- 383
S+ K+ I G + I + + ++
Sbjct: 46 ASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSRFRHPARVAVDDLLYLS 105
Query: 384 --YSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISF 441
S + + + ++ + G + + +++ +
Sbjct: 106 TSVSDGTASDALFEITPPAQVEQMVREWGFRDLTVRHSMRELSETPAERFESADAHLAHA 165
Query: 442 GHGLSTTPLQTAVAAAALINEGRLIPPTFMIR---------SREESEKVSRIVLKKNTVK 492
+ T + + + + L
Sbjct: 166 LAISAGTSGRGHRVPQLDVARANTGTARAFVDLLEALWAPVLTGPRPGRTSRALPPEPAA 225
Query: 493 TMRSLLREGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQ 551
+R L+ + F KTGT + + V
Sbjct: 226 RLRELMAANLLRHRLAPDFASDAATWSSKTGTLLNLR----------HEVGVVEHADGQV 275
Query: 552 YIVLSFMDSPKIKERNQLTAGI 573
+ V +S + +
Sbjct: 276 FAVAVLTESQVPADSQPGAEAL 297
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase
induction, penicillin-binding protein, membrane protein;
2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Length = 262
Score = 112 bits (282), Expect = 2e-25
Identities = 47/330 (14%), Positives = 99/330 (30%), Gaps = 88/330 (26%)
Query: 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY 324
N+ +++ K++A G V+ N + + Y+ E+
Sbjct: 17 TNVEYEDYSTFFDKFSASG-GFVLFNSNRKKYTI------YNRKESTSR----------- 58
Query: 325 GIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRY 384
F S +KVF+ + ++SG+ T D T + + Y N+ +
Sbjct: 59 --FAPASTYKVFSALLALESGIITKNDSHMTWD------GTQYPYKEWNQDQDLFSAMSS 110
Query: 385 SSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG 444
S+ ++ +G + +L + ++ + P+ W
Sbjct: 111 STTWYFQKLDRQIGEDHLRHYLKSIHYGNE------DFSVPA--DYWL---------DGS 153
Query: 445 LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTG 504
L +PL+ + + ++T++
Sbjct: 154 LQISPLEQVNILKKFYDNEFDFKQS--------------------NIETVK--------- 184
Query: 505 GSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIK 564
S R G + GKTGT+ + F+ T D + + K
Sbjct: 185 DSIRLEESNGRVLSGKTGTSVINGELHAG------WFIGYVETADNTFFFAVHIQGEKR- 237
Query: 565 ERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
AG + A + +I+ + G+ P
Sbjct: 238 -----AAGSSAAEIALSILDK----KGIYP 258
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase,
hydrolase, antibiotic resistance, carbamylated lysine;
HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1
Length = 254
Score = 111 bits (279), Expect = 4e-25
Identities = 29/328 (8%), Positives = 77/328 (23%), Gaps = 89/328 (27%)
Query: 267 IVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGI 326
+ + + ++ A+ V+ + + +V +DP + K
Sbjct: 5 LERSDWRKFFSEFQAKG-TIVVADERQADRAMLV----FDPVRSKKR------------- 46
Query: 327 FEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSS 386
+ S FK+ +D+G + + V + N+ + R S+
Sbjct: 47 YSPASTFKIPHTLFALDAGAVRDEFQIFRWD------GVNRGFAGHNQDQDLRSAMRNST 100
Query: 387 NIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLS 446
A +G + +L ++ + + L+
Sbjct: 101 VWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNG----------------DYWIEGSLA 144
Query: 447 TTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGS 506
+ + L + ++ L+
Sbjct: 145 ISAQEQIAFLRKLYRNELPFRV--------------------EHQRLVKDLM-------- 176
Query: 507 GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKER 566
+ + KTG ++ ++ +D+P
Sbjct: 177 -IVEAGRNWILRAKTGWEGRM-----------GWWVGWVEWPTGSVFFALNIDTPN---- 220
Query: 567 NQLTAGINVAPMVGNIIRRSASMLGVKP 594
++ I+R + P
Sbjct: 221 -----RMDDLFKREAIVRAILRSIEALP 243
>2v2f_F Penicillin binding protein 1A; transpeptidase activity,
peptidoglycan synthesis, transferase, hydrolase; HET:
MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B*
2zc5_B* 2c6w_B 2c5w_B*
Length = 390
Score = 110 bits (276), Expect = 7e-25
Identities = 57/354 (16%), Positives = 117/354 (33%), Gaps = 33/354 (9%)
Query: 256 IRLALDLRIQNIVHQELVENKKKYNAE---SVGTVILNVSTGEVISMVSIPDYDPHEAFK 312
+ +D Q + ++ + V + +++VS G+VI+ + + +F
Sbjct: 35 VYTNVDQEAQKHLWDIYNSDQYVSYPDDDLQVASTVVDVSNGKVIAQLGARHQASNVSF- 93
Query: 313 GKKEGWFNRISYGIFEMGSIFKVFTIAM-GIDSGLFTVKDLFDTRNPIKV---GKHVIHD 368
N+ + GS K T I+ G++ P V +
Sbjct: 94 -----GTNQAVETNRDWGSAMKPITDYAPAIEYGVYDSTATMVNDIPYNYPGTSTPVYNW 148
Query: 369 YHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP 428
+T+ + S N+ A + + +G+ K FL LG+
Sbjct: 149 DRAYFGNITLQYALQQSRNVTAVETLNKVGLDRAKTFLNGLGIDYP------------SM 196
Query: 429 SQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSRE------ESEKVS 482
I S T + + A A AA N G P ++ + E V
Sbjct: 197 HYANAISSNTTESNKQYGASSEKMAAAYAAFANGGIYHKPMYINKVVFSDGSKKEFSDVG 256
Query: 483 RIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQ--KVIKKRYSDTLNFNS 540
+K+ T M +++ + G+GR A++P GKTGT+ +++ + +
Sbjct: 257 TRAMKETTAYMMTEMMKTVLAYGTGRGAYLPWLAQAGKTGTSNYTDDEIEKHIKNTGYVA 316
Query: 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
+F +Y + + + A + ++I + +
Sbjct: 317 PDEMFVGYTRKYSMAVWTGYSNRLTPIVGDGFLVAAKVYRSMITYLSEGSNPED 370
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis,
transmembrane, antibiotic resistance, cell shape,
peptidoglycan, cell membrane; 2.18A {Streptococcus
pneumoniae} PDB: 2wae_A 2waf_A
Length = 680
Score = 109 bits (271), Expect = 2e-24
Identities = 89/565 (15%), Positives = 173/565 (30%), Gaps = 101/565 (17%)
Query: 88 LAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPD 147
+A +++ Y +I + D Y P+I + E L ++ S + +
Sbjct: 96 IAKKLLTYVSISSPNLTERQLADYYLAD-PEIYKKTVEALPSEKRLDSDGNRLSESELYN 154
Query: 148 EIIEKLQIVLPNLDSE-----MIRRKLSSETKFQW---LRRKLSPQQQKRI--LSFGLPG 197
++ + N + + +L++ F L+ Q I +S +PG
Sbjct: 155 NAVDSVPTSQLNYTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPG 214
Query: 198 VGFRLEKSRFYPAASHASHV--------------------VGYVDIDNRGITGIEKFLDM 237
+ R S +S V GY D G + +EK +
Sbjct: 215 ISISTSWDRKILETSLSSIVGSVSSEKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEE 274
Query: 238 QGLT---------------RVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAE 282
+ + I+L +DL Q+ V L
Sbjct: 275 VLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSYFNSELGN 334
Query: 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGW--------FNRISYGIFEMGSIFK 334
+ V ++ P + G K +F GS+ K
Sbjct: 335 GG-----AKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 335 VFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRIL---TIPEIFRYSSNIGAA 391
TI+ G ++G+ + + + G I+ ++ T E YSSN
Sbjct: 390 AATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSWYKLAYGSFPITAVEALEYSSNAYVV 449
Query: 392 QIAD------------------AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKR 433
Q A + + GL S +LP+ P ++
Sbjct: 450 QTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDLPDESTGLVPKEYNF 509
Query: 434 IHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIR--------------SREESE 479
+ +T +FG + TP+Q A A + N G + P + +++
Sbjct: 510 ANFITNAFGQFDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTK 569
Query: 480 KVSRIVLKKNTVKTMRSLLREGVTG----GSGRRAF-VPGFEVGGKTGTAQKVIKKRYSD 534
+++++ + ++ + + + G +GR + GKTGT + +
Sbjct: 570 EINKVNISESDMAILHQGFYQVSHGTSPLTTGRAFSDGATVSISGKTGTGESYVAGGQEA 629
Query: 535 TLNFNSFLAVFPTTDPQYIVLSFMD 559
+ +A PT +PQ V
Sbjct: 630 --TNTNAVAYAPTENPQIAVAVVFP 652
Score = 49.5 bits (116), Expect = 2e-06
Identities = 23/180 (12%), Positives = 59/180 (32%), Gaps = 9/180 (5%)
Query: 64 RKVIAHS-KNRIGMTIVVCLVIYIILAIR-----IIQYGNIHPEPIAPSMNIDEYGMSRP 117
RK +HS R+ + + +++++ + R ++ + + S +R
Sbjct: 2 RKFNSHSIPIRLNLLFSIVILLFMTIIGRLLYMQVLNKDFYEKKLASASQTKVTTSSARG 61
Query: 118 DIIDRNGEILATDIPTFSLYVEPHKVISPD---EIIEKLQIVLPNLDSEMIRRKLSSETK 174
+I D +G+ L + + ++ EI +KL + + R+L+
Sbjct: 62 EIYDASGKPLVENTLKQVVSFTRSNKMTATDLKEIAKKLLTYVSISSPNLTERQLADYYL 121
Query: 175 FQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKF 234
K + + G + S + + Y + + + I +
Sbjct: 122 ADPEIYKKTVEALPSEKRLDSDGNRLSESELYNNAVDSVPTSQLNYTEDEKKEIYLFSQL 181
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A*
Length = 751
Score = 91.8 bits (227), Expect = 4e-19
Identities = 52/343 (15%), Positives = 104/343 (30%), Gaps = 52/343 (15%)
Query: 260 LDLRIQNIVHQELVENKKKY------NAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG 313
D Q+ + VE + V+++ +GEV +MV +
Sbjct: 389 FDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFA----- 443
Query: 314 KKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQN 373
+NR +GS+ K T + + + PI + + + PQN
Sbjct: 444 ----GYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQN 499
Query: 374 RILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKR 433
E R + + + + ++ +P+ Q P+
Sbjct: 500 DDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAML-- 557
Query: 434 IHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV-------SRIVL 486
L+ TP++ A A + + G P + + E KV + +
Sbjct: 558 --------LGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAV 609
Query: 487 KKNTVKTMRSLLREGVTGGSGRR--AFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAV 544
+++ V G+GR+ A P + GKTGT D
Sbjct: 610 PAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNN-----NVD--------TW 656
Query: 545 FPTTDPQYIVLSFM--DSPKIKERNQLTAGINVAPMVGNIIRR 585
F D + ++++ D+ + +L + +
Sbjct: 657 FAGIDGSTVTITWVGRDNNQ---PTKLYGASGAMSIYQRYLAN 696
>1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation,
hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa}
SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A*
1k56_A* 1k57_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 1fof_A
1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* 2hp5_A
1h8z_A 1h8y_A* ...
Length = 246
Score = 91.6 bits (227), Expect = 5e-19
Identities = 39/319 (12%), Positives = 81/319 (25%), Gaps = 85/319 (26%)
Query: 272 LVENK---KKYNAESV-GT-VILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGI 326
+ EN K+++AE+V G V+ S+ + D A K
Sbjct: 2 ITENTSWNKEFSAEAVNGVFVLCKSSSKSCAT------NDLARASKE------------- 42
Query: 327 FEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSS 386
+ S FK+ +G+++G+ + + R LT+ + S+
Sbjct: 43 YLPASTFKIPNAIIGLETGVIKNEHQVFKWD------GKPRAMKQWERDLTLRGAIQVSA 96
Query: 387 NIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLS 446
QIA +G +++L + ++ + + L
Sbjct: 97 VPVFQQIAREVGEVRMQKYLKKFSYGNQ---NISGGIDKFW-------------LEGQLR 140
Query: 447 TTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGS 506
+ + +L K ++ L
Sbjct: 141 ISAVNQVEFLESLYLNKLSA--------------------SKENQLIVKEALVT------ 174
Query: 507 GRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKER 566
P + V KTG + + ++ Y MD
Sbjct: 175 ---EAAPEYLVHSKTGFSGVGTESNPGVA----WWVGWVEKETEVYFFAFNMDIDNE--- 224
Query: 567 NQLTAGINVAPMVGNIIRR 585
+ + I+
Sbjct: 225 ---SKLPLRKSIPTKIMES 240
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET:
KCX; 1.90A {Klebsiella pneumoniae}
Length = 265
Score = 90.5 bits (224), Expect = 1e-18
Identities = 25/276 (9%), Positives = 67/276 (24%), Gaps = 69/276 (25%)
Query: 319 FNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTI 378
R + F S FK+ + +D G+ + + D NR +
Sbjct: 59 LKRANQA-FLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQT------RDIATWNRDHNL 111
Query: 379 PEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLT 438
+YS + A +G + L+ ++ ++ +
Sbjct: 112 ITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNE---DISGNVDSFW----------- 157
Query: 439 ISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLL 498
G+ + + L + + + + ++ +
Sbjct: 158 --LDGGIRISATEQISFLRKLYHNKLHVSER--------------------SQRIVKQAM 195
Query: 499 REGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFM 558
+ + KTG + ++ ++ D + M
Sbjct: 196 LT---------EANGDYIIRAKTGYSTRIEP-------KIGWWVGWVELDDNVWFFAMNM 239
Query: 559 DSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594
D P + ++++ + P
Sbjct: 240 DMPTS------DGLGLRQAITKEVLKQ----EKIIP 265
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance,
bacterial antibiotic resistance, methicillin resistance,
beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus
aureus} PDB: 2iwc_A* 2iwd_A*
Length = 246
Score = 86.0 bits (212), Expect = 2e-17
Identities = 33/325 (10%), Positives = 76/325 (23%), Gaps = 85/325 (26%)
Query: 261 DLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFN 320
D N+ +++L + + V+ N Y+ E+ +
Sbjct: 1 DKYETNVSYKKLNQLAPYFKGFDGSFVLYNEREQA------YSIYNEPESKQR------- 47
Query: 321 RISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPE 380
+ S +K++ M D L ++ + + + N+ +
Sbjct: 48 ------YSPNSTYKIYLALMAFDQNLLSLNHTEQQWD------KHQYPFKEWNQDQNLNS 95
Query: 381 IFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTIS 440
+YS N + + K +L + + I
Sbjct: 96 SMKYSVNWYYENLNKHLRQDEVKSYLDLIE------------------YGNEEISGNENY 137
Query: 441 FGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499
+ L + ++ + + +
Sbjct: 138 WNESSLKISAIEQVNLLKNMKQHNMHFDNKAIEKVEN----------------------- 174
Query: 500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMD 559
S ++ GKTGT K+ F+ T D Y + +
Sbjct: 175 ------SMTLKQKDTYKYVGKTGTGIVNHKEANG------WFVGYVETKDNTYYFATHLK 222
Query: 560 SPKIKERNQLTAGINVAPMVGNIIR 584
G + I++
Sbjct: 223 GEDN------ANGEKAQQISERILK 241
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal
transduction, signaling protein; HET: CAZ EPE; 1.75A
{Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A*
1xa7_A*
Length = 255
Score = 84.5 bits (208), Expect = 6e-17
Identities = 36/315 (11%), Positives = 81/315 (25%), Gaps = 84/315 (26%)
Query: 271 ELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMG 330
++++ K + + S V+ ++ + Y+ E+ K +
Sbjct: 18 QILDKSKIFGSNSGSFVMYSMKKDK------YYIYNEKESRKR-------------YSPN 58
Query: 331 SIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGA 390
S +K++ G+D + N H + + N+ + + S N
Sbjct: 59 STYKIYLAMFGLDRHIIN------DENSRMSWNHKHYPFDAWNKEQDLNTAMQNSVNWYF 112
Query: 391 AQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPL 450
+I+D + L +L + L + L
Sbjct: 113 ERISDQIPKNYTATQLKQLNY-----------------GNKNLGSYKSYWMEDSLKISNL 155
Query: 451 QTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRA 510
+ + ++ + + S
Sbjct: 156 EQVIVFKNMMEQNNHFSK--------------------KAKNQLSSS---------LLIK 186
Query: 511 FVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLT 570
+E+ GKTGT K F+ T +Y + + K
Sbjct: 187 KNEKYELYGKTGTGIVNGKYNNG------WFVGYVITNHDKYYFATHLSDGK-------P 233
Query: 571 AGINVAPMVGNIIRR 585
+G N + I++
Sbjct: 234 SGKNAELISEKILKE 248
>3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism,
carbapenem, resistance, hydrolase; HET: KCX; 1.97A
{Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A*
3fv7_A*
Length = 244
Score = 84.0 bits (207), Expect = 8e-17
Identities = 34/316 (10%), Positives = 82/316 (25%), Gaps = 76/316 (24%)
Query: 277 KKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVF 336
+ + +++ + T VI + + + R + + S FK+
Sbjct: 4 SQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGN-------ALARANKE-YVPASTFKML 55
Query: 337 TIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADA 396
+G+++ T ++F K + + +T+ E S+ ++A
Sbjct: 56 NALIGLENHKATTNEIFKWDG----KKRTYPMWE---KDMTLGEAMALSAVPVYQELARR 108
Query: 397 MGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAA 456
G++ ++ + R+ + + + L TP+Q A
Sbjct: 109 TGLELMQKEVKRVNFGNT---NIGTQVDNFW-------------LVGPLKITPVQEVNFA 152
Query: 457 AALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFE 516
L + ++ V G +
Sbjct: 153 DDLAHNRLPFKLETQEEVKK-----------------------------MLLIKEVNGSK 183
Query: 517 VGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVA 576
+ K+G T + + I S E + +G
Sbjct: 184 IYAKSGWGM-------GVTPQVGWLTGWVEQANGKKIPFSLNL-----EMKEGMSGSIRN 231
Query: 577 PMVGNIIRRSASMLGV 592
+ + LG+
Sbjct: 232 EITYKSLEN----LGI 243
>2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan
synthesis multifunctional enzyme, cell WALL; 1.9A
{Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2uwy_A*
2uwx_A* 2fff_B
Length = 494
Score = 79.3 bits (194), Expect = 2e-15
Identities = 57/409 (13%), Positives = 119/409 (29%), Gaps = 54/409 (13%)
Query: 204 KSRFYPAASHASHVVGYV--DIDNRGITGIEKFL----------DMQGLTRVFTTNKGEK 251
+ F P+ + Y+ + +L T+ F + K
Sbjct: 25 RQDFLPSGTVTGISQDYLYFTTLAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAK 84
Query: 252 NLQP----IRLALDLRIQNIVHQELVENKKKYNAES----VGTVILNVSTGEVISMVSIP 303
++ I +D +I + + + + + + VG V+++ TG ++ V
Sbjct: 85 EIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQTGAILGFVGGR 144
Query: 304 DYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTI-AMGIDSGLFTVKDLFDTRNPIKVG 362
+Y + N S K + ID GL + +
Sbjct: 145 NYQEN---------QNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFAN 195
Query: 363 KHVIHDYHPQNRI-LTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPE 421
+ I + + +T+ E YS NI A + G Y + K+ E+PE
Sbjct: 196 GNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGY----MEKMGYEIPE 251
Query: 422 IQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV 481
S P I +G T +I++ + +++ +V
Sbjct: 252 YGIESLPMGG-GIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKPVQV 310
Query: 482 SRIVLKKNTVKTMRSLLREGVT-----GGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTL 536
+R +L VT + + + GKTGT
Sbjct: 311 YSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTN----------- 359
Query: 537 NFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRR 585
+ P+ + ++ +Q N + + +++
Sbjct: 360 --QDENMWLMLSTPRLTLGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNA 406
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
carboxylation, antibiotic resistance, plasmid,
transposable element; HET: KCX DRW; 1.40A {Escherichia
coli} PDB: 1m6k_A*
Length = 251
Score = 73.0 bits (178), Expect = 2e-13
Identities = 39/296 (13%), Positives = 80/296 (27%), Gaps = 60/296 (20%)
Query: 297 ISMVSIPDYDPHE-AF------KGKKEGWFNR-ISYGIFEMGSIFKVFTIAMGIDSGLFT 348
IS V+ P ++ E F + FN+ S FK+ M D+ +
Sbjct: 4 ISTVASPLFEGTEGCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFDAEIID 63
Query: 349 VKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYR 408
K +F K + + T ++S + +I +G+ K +L
Sbjct: 64 QKTIFKWDKTPKGMEIWNSN-------HTPKTWMQFSVVWVSQEITQKIGLNKIKNYLKD 116
Query: 409 LGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPP 468
++ + + L +P + +IN +
Sbjct: 117 FDYGNQDFSGDK----------ERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLPVKN 166
Query: 469 TFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVI 528
+ + +NT++ M + ++ GKTG
Sbjct: 167 SAI----------------ENTIENMY------------LQDLDNSTKLYGKTGAGFTAN 198
Query: 529 KKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIR 584
+ + F + V + + LT+ I I+
Sbjct: 199 RTLQNG-----WFEGFIISKSGHKYVFVSALTG--NLGSNLTSSIKAKKNAITILN 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.8 bits (168), Expect = 3e-12
Identities = 90/546 (16%), Positives = 144/546 (26%), Gaps = 216/546 (39%)
Query: 192 SFGLP-GVGFRLE--KSRFYPAASHASHVVGYVDIDNRGITGIE---KFLDMQGLT--RV 243
+P F + +F G+ D+ T E KFL G V
Sbjct: 19 VLLVPTASFFIASQLQEQF--NKILPEPTEGFAA-DDEPTTPAELVGKFL---GYVSSLV 72
Query: 244 FTTNKGEKNLQPIRLALD------LR---IQNIVHQELVENKKKYNAESVGTVILNVSTG 294
+ G+ Q + L L L I + + L EN +I N T
Sbjct: 73 EPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT--LVKTKELIKNYITA 129
Query: 295 EVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFT-VKDLF 353
+++ F+ EG ++ IF G G F ++DL+
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNA-QL-VAIF--G--------GQGNTDDYFEELRDLY 177
Query: 354 DTRNPIKVGKHVIHDYHPQNRILTIPEIFRY-SSNIGAAQIADAMGIQGHKEFLYRLGL- 411
T + + + D I E A E ++ GL
Sbjct: 178 QTYHVL------VGDL-----IKFSAETLSELIRTTLDA------------EKVFTQGLN 214
Query: 412 ----LSKLETELPE----IQAP-SYP---------------------------------- 428
L P+ + P S P
Sbjct: 215 ILEWLENPSNT-PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 429 SQ-------------WKRIHS-----LTISF--G-HGLSTTPLQTAVAAAALI-----NE 462
SQ W+ +T+ F G P T++ + L NE
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNE 332
Query: 463 GRLIPPTFM--IR--SREESEKV-----------SRIVLKKNTVKTMRSLLREGVTGGSG 507
G P+ M I ++E+ + ++ + SL+ +G
Sbjct: 333 GV---PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---------SLV-------NG 373
Query: 508 RRAFV---P-----GF-----EVGGKTGTAQKVI--KKRYSDTLNF-NSFLAVFPTTDP- 550
+ V P G + +G Q I +R L F N FL P P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFL---PVASPF 427
Query: 551 --QYIVLSFMD-SPKIKER----------NQL------TA-GINVAPMVGNIIRRSASML 590
L S I + + T G ++ + G+I R +
Sbjct: 428 HSHL--LV--PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 591 GVKPVF 596
PV
Sbjct: 484 IRLPVK 489
Score = 54.2 bits (130), Expect = 9e-08
Identities = 55/326 (16%), Positives = 97/326 (29%), Gaps = 136/326 (41%)
Query: 3 FPFITVSQFRMFFSMGILHNHNMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQKR 62
P I V Q H + ++ + + G G+ +
Sbjct: 238 CPLIGVIQLA----------HYV--------VTAKLL---------GFT--PGE--LRSY 266
Query: 63 RRKVIAHSKNRIGMTIVVCLVI---------Y--IILAIRII---------QYGNIHPEP 102
+ HS+ G +V + I + + AI ++ Y N
Sbjct: 267 LKGATGHSQ---G--LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT---S 318
Query: 103 IAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVE--PHKVISPDEIIEKLQIVLPNL 160
+ PS+ D ++ N E +P+ L + + + + + K LP
Sbjct: 319 LPPSI--------LEDSLE-NNE----GVPSPMLSISNLTQEQV--QDYVNKTNSHLP-- 361
Query: 161 DSEMIRRKL-SSETKF-------------QWLRRKLSP--QQQKRILSFGLPGVGFRLEK 204
+ + L + LR+ +P Q RI P F K
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----P---FSERK 413
Query: 205 ----SRFYPAAS--HASHVVGYVDIDNRGITGIEKFLDMQGLT--------RVFTTNKGE 250
+RF P AS H+ +V D+ I K L ++ V+ T G
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDL-------INKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 251 KNLQPIRLALDLR--IQNIVHQELVE 274
DLR +I + +V+
Sbjct: 467 ----------DLRVLSGSISER-IVD 481
Score = 38.0 bits (88), Expect = 0.006
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 57/220 (25%)
Query: 110 DEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPD---EIIEKLQIVLPNLDSEMIR 166
D YG S DI+ N L T E K I + I E IV L +E I
Sbjct: 1655 DTYGFSILDIVINNPVNL-----TIHFGGEKGKRIRENYSAMIFET--IVDGKLKTEKIF 1707
Query: 167 RKLSSETKFQWLRRKLSPQQQKRILS---FGLPGVGFRLEKSRF--------YPA-ASHA 214
++++ + R +K +LS F P + +EK+ F PA A+ A
Sbjct: 1708 KEINEHSTSYTFR------SEKGLLSATQFTQPALTL-MEKAAFEDLKSKGLIPADATFA 1760
Query: 215 SHVVG-YVDIDNRG-ITGIEKFLDM---QGLT--------RVFTTNKGEKNLQPIRLALD 261
H +G Y + + + IE +++ +G+T + +N G + P R+A
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 262 LRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVS 301
QE ++ Y E VG TG ++ +V+
Sbjct: 1821 FS------QEALQ----YVVERVGK-----RTGWLVEIVN 1845
>2olv_A Penicillin-binding protein 2; transpeptidase fold,
glycosyltransferase family 51, lysozyme fold; HET: M0E;
2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1
PDB: 2olu_A* 3dwk_A*
Length = 669
Score = 60.5 bits (145), Expect = 1e-09
Identities = 51/323 (15%), Positives = 88/323 (27%), Gaps = 37/323 (11%)
Query: 278 KYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFT 337
K + VG IL+ TG ++++ D+ + GS K F
Sbjct: 296 KNKDQQVGATILDSKTGGLVAISGGRDFKDV---------VNRNQATDPHPTGSSLKPFL 346
Query: 338 IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPE--IFRYSSNIGAAQIAD 395
+ + + T+ R S NI A +
Sbjct: 347 AYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALRQSFNIPALKAWQ 406
Query: 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVA 455
++ + + +KL PS +P Q A A
Sbjct: 407 SVKQNAGNDAPKKFA--AKLGLNYEGDIGPSEVLGGSAS-----------EFSPTQLASA 453
Query: 456 AAALINEGRLIPPTFMIRSREESEKV------SRIVLKKNTVKTMRSLLREGVT-GGSGR 508
AA+ N G + + + S + T + +L+ GS
Sbjct: 454 FAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAY 513
Query: 509 RAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFL-AVFPTTDPQYIVLSFM--DSPKIKE 565
V G +G KTGT + L N+ PQY + +M K
Sbjct: 514 GHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQYTMSVWMGFSKVKQYG 573
Query: 566 RNQL---TAGINVAPMVGNIIRR 585
N + + N++ +
Sbjct: 574 ENSFVGHSQQEYPQFLYENVMSK 596
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 58.1 bits (139), Expect = 5e-09
Identities = 48/369 (13%), Positives = 102/369 (27%), Gaps = 56/369 (15%)
Query: 237 MQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAE----SVGTVILNVS 292
Q R + E I +D +I + + + + + VG V+++
Sbjct: 300 TQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQ 359
Query: 293 TGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDL 352
TG ++ V +Y ++ + + + + + L
Sbjct: 360 TGAILGFVGGRNYQENQ-------NNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETIL 412
Query: 353 FDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLL 412
+ G +++ ++T+ E YS NI A + G Y
Sbjct: 413 SNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGY----- 467
Query: 413 SKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMI 472
+ ++ G G+ T Q L N G +
Sbjct: 468 -----------MEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVIS 516
Query: 473 RSREESEKV-------SRIVLKKNTVKTMRSLLREGVTGGSGR---------RAFVPGFE 516
+ +V V K T M+ LLRE ++ + +
Sbjct: 517 KIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANAD 576
Query: 517 VGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVA 576
GKTGT + + + P+ + ++ +Q N +
Sbjct: 577 WIGKTGTTNQ-----DEN--------MWLMLSTPRLTLGGWIGHDDNHSLSQQAGYSNNS 623
Query: 577 PMVGNIIRR 585
+ +++
Sbjct: 624 NYMAHLVNA 632
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
beta-lactam hydrolysis, benzylpenicillin, cephaloridine;
HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1
PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A
3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Length = 258
Score = 40.1 bits (93), Expect = 0.001
Identities = 52/318 (16%), Positives = 95/318 (29%), Gaps = 83/318 (26%)
Query: 270 QELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEM 329
+EL + +KKYNA +G L+ +G+ + ++ + F
Sbjct: 2 KELNDLEKKYNAH-IGVYALDTKSGKEVK------FNSDKRF----------------AY 38
Query: 330 GSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRI-----LTIPE---- 380
S K A+ ++ + + K I Y P +T+
Sbjct: 39 ASTSKAINSAILLEQV-----PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEA 93
Query: 381 IFRYSSNIGAAQIADAM-GIQGHKEFLYRLGL-LSKLETELPEIQAPSYPSQWKRIHSLT 438
YS N +I + GI+ K+ L LG ++ E+Q S S+
Sbjct: 94 SMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSPKSKKDTS---- 149
Query: 439 ISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLL 498
TP LI G+L K + L+
Sbjct: 150 ---------TPAAFGKTLNKLIANGKLSKENK---------------------KFLLDLM 179
Query: 499 REGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSF 557
+G + + VP ++V K+G A + +++ F
Sbjct: 180 LNNKSGDTLIKDGVPKDYKVADKSGQAIT-------YASRNDVAFVYPKGQSEPIVLVIF 232
Query: 558 M--DSPKIKERNQLTAGI 573
D+ K ++L +
Sbjct: 233 TNKDNKSDKPNDKLISET 250
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic
resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Length = 266
Score = 39.3 bits (91), Expect = 0.002
Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 70/267 (26%)
Query: 270 QELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEM 329
+EL + +KKYNA +G L+ +G+ + ++ + F
Sbjct: 47 KELNDLEKKYNAH-IGVYALDTKSGKEVK------FNSDKRF----------------AY 83
Query: 330 GSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHD---YHPQNRILTIPEIFRYSS 386
S K A+ ++ + + + I V + + +T+ + S
Sbjct: 84 ASTSKAINSAILLEQV---PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 140
Query: 387 NIGAAQIADAM-----GIQGHKEFLYRLGLL-SKLETELPEIQAPSYPSQWKRIHSLTIS 440
+ + GI+ K+ L LG + E+ S S+
Sbjct: 141 TYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTST----- 195
Query: 441 FGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLRE 500
P LI G+L K + L+
Sbjct: 196 --------PAAFGKTLNKLIANGKLSKENK---------------------KFLLDLMLN 226
Query: 501 GVTGGSGRRAFVP-GFEVGGKTGTAQK 526
+G + + VP ++V K+G A
Sbjct: 227 NKSGDTLIKDGVPKDYKVADKSGQAIT 253
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET:
MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Length = 271
Score = 38.6 bits (89), Expect = 0.004
Identities = 50/320 (15%), Positives = 93/320 (29%), Gaps = 77/320 (24%)
Query: 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY 324
N + ++L +K +G ++N I+ Y E F
Sbjct: 3 NNTIEEQLNTLEKYSQGR-LGVALINTEDNSQIT------YRGEERF------------- 42
Query: 325 GIFEMGSIFKVFTIAMG---IDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT---I 378
M S KV +A + + + V I + H +
Sbjct: 43 ---AMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAELS 99
Query: 379 PEIFRYSSNIGAAQIADAM-GIQGHKEFLYRLGL-LSKLETELPEIQAPSYPSQWKRIHS 436
+YS N +I D + G +F + +L+ + PE+ +
Sbjct: 100 AATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDT--- 156
Query: 437 LTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496
T+P+ A + AL L + + +
Sbjct: 157 ----------TSPIAMAKSLQALTLGDALGQSQR---------------------QQLVT 185
Query: 497 LLREGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVL 555
L+ TG + +A +P + VG KTG+ D N ++P I++
Sbjct: 186 WLKGNTTGDNSIKAGLPKHWVVGDKTGS---------GDYGTTNDIAVIWPENHAPLILV 236
Query: 556 SFMDSPK--IKERNQLTAGI 573
+ + K R + A
Sbjct: 237 VYFTQQEQNAKYRKDIIAKA 256
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted
mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia
coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Length = 264
Score = 38.3 bits (88), Expect = 0.005
Identities = 48/319 (15%), Positives = 85/319 (26%), Gaps = 76/319 (23%)
Query: 266 NIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYG 325
N+V + + ++ + +G ++ +G +S Y E F
Sbjct: 2 NLVAEPFAKLEQDFGGS-IGVYAMDTGSGATVS------YRAEERF-------------- 40
Query: 326 IFEMGSIFKVFTIAM---GIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILT---IP 379
+ S FK F A + V I + + +
Sbjct: 41 --PLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA 98
Query: 380 EIFRYSSNIGAAQIADAMGIQGHKE-FLYRLGLL-SKLETELPEIQAPSYPSQWKRIHSL 437
+YS N A + +G F+ +G +L+ E+ +
Sbjct: 99 AAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTS--- 155
Query: 438 TISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSL 497
+P + L L P +
Sbjct: 156 ----------SPRAVTESLQKLTLGSALAAPQR---------------------QQFVDW 184
Query: 498 LREGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLS 556
L+ TG RA VP + VG KTGT N + V+PT ++
Sbjct: 185 LKGNTTGNHRIRAAVPADWAVGDKTGT--------CGVYGTANDYAVVWPTGRAPIVLAV 236
Query: 557 FMDSPK--IKERNQLTAGI 573
+ +P K + A
Sbjct: 237 YTRAPNKDDKHSEAVIAAA 255
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA
bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus
iheyensis}
Length = 260
Score = 36.3 bits (83), Expect = 0.020
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 86/319 (26%)
Query: 270 QELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEM 329
++L + +++++ +G ++ + IS Y +E F
Sbjct: 3 EDLKKLEEEFDVR-LGVYAIDTGADKEIS------YRENERF----------------AY 39
Query: 330 GSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQ-----NRILTIPEIFR- 383
S FK + + K + I + + Y P + +T+ EI
Sbjct: 40 TSTFKPLAVGA-----VLQTKSDEELEETITYSEEDLVTYSPITEQHVDEGMTLVEIADA 94
Query: 384 ---YSSNIGAAQIADAMGIQGH-KEFLYRLGL-LSKLETELPEIQAPSYPSQWKRIHSLT 438
YS N + +AMG + L +G +++ E+
Sbjct: 95 AIRYSDNTAGNLLLEAMGGPDELETILRDIGDETIEMDRYETELNEAKPGDIRDT----- 149
Query: 439 ISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLL 498
+T A + E L + + ++L
Sbjct: 150 --------STAKAMATTLQQYVLEDVLDADRR---------------------EVLTNML 180
Query: 499 REGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSF 557
TG + RA VP G+ VG KTG N ++P D + IV++
Sbjct: 181 INNTTGDALIRAGVPDGWTVGDKTG---------AGGYGTRNDIGIIWPEGDEEPIVIAI 231
Query: 558 M---DSPKIKERNQLTAGI 573
M D ++L
Sbjct: 232 MSSRDEEDADYDDKLIEKA 250
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET:
ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A*
Length = 371
Score = 34.9 bits (79), Expect = 0.051
Identities = 44/300 (14%), Positives = 83/300 (27%), Gaps = 53/300 (17%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHV----------------- 365
+FE+GS+ K FT + + D P G
Sbjct: 59 LFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLP 118
Query: 366 -------------IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHK--EFLYRLG 410
I DY+ Q + P R SN + E L
Sbjct: 119 LQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQ 178
Query: 411 LLSKLE-----TELPEIQAPSY-------PSQWKRIHSLTISFGHGLSTTPLQTAVAAAA 458
+ L ++PE Y + + G+G+ T+ A
Sbjct: 179 VFPALGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDA 238
Query: 459 LINEGRLIPPTF--MIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFE 516
++ RL P + + KV + + + + G+ +
Sbjct: 239 NLHPERLDRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMALQPHR 298
Query: 517 VGGKTGTAQKVIKKRYS---DTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGI 573
+ ++ + T F +++A P D ++L+ + P ER ++ I
Sbjct: 299 IARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYP-NAERVKIAYAI 357
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic
resistance, hydrolase, periplasm; 2.26A {Pseudomonas
fluorescens}
Length = 358
Score = 34.3 bits (77), Expect = 0.070
Identities = 39/300 (13%), Positives = 77/300 (25%), Gaps = 54/300 (18%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYH------------ 370
+FE+GS+ K FT + +G + D P G H
Sbjct: 55 LFEIGSVSKTFTATLAGYALANGKLKLSDPASQYLPALRGDKFDHISLLNLGTYTAGGLP 114
Query: 371 -------------------------PQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEF 405
P + L ++ A + +
Sbjct: 115 LQFPEESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLAAQSLGQPFEKLMEQTV 174
Query: 406 LYRLGLLS---KLETELPEIQAPSYPSQWKRI---HSLTISFGHGLSTTPLQTAVAAAAL 459
L +LGL + + A Y K + + +G+ T+
Sbjct: 175 LPKLGLKHTFISVPETQMSLYAQGYDKAGKPVRVSPGALDAEAYGIKTSTSDLIHYVEVN 234
Query: 460 INEGRLIPP------TFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVP 513
++ +L P + + L EG +
Sbjct: 235 MHPAKLEKPLQQAIAATHTGYYTVDGMTQGLGWEMYPYPIKVDALVEGNSTQMAMEPHKV 294
Query: 514 GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGI 573
+ + ++ K T F +++A P+ ++L+ + P ER + I
Sbjct: 295 NWLTPPQAAPLDTLVNK-TGSTGGFGAYVAYVPSKGLGVVILANKNYP-NAERVKAAHAI 352
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea,
hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Length = 447
Score = 32.6 bits (73), Expect = 0.24
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIF 382
I+ +GSI K FT I ++ G ++ D V K V P +T+ +
Sbjct: 54 IYGIGSITKSFTALAIMKLVEEGGLSLDD--------PVEKFVNIKLRPFGEPVTVHHLL 105
Query: 383 RYSSNIGAAQIADAM 397
+SS I + A+A
Sbjct: 106 THSSGIPSLGYAEAF 120
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Length = 307
Score = 32.1 bits (72), Expect = 0.32
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 28/151 (18%)
Query: 265 QNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY 324
+ + + + +++++A+ +G L+ T ++ Y P E F
Sbjct: 43 KTEMKDDFAKLEEQFDAK-LGIFALDTGTNRTVT------YRPDERF------------- 82
Query: 325 GIFEMGSIFKVFTIAMGID--SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRIL--TIPE 380
S K T+ + + S + + TR+ + + + L
Sbjct: 83 ---AFASTIKALTVGVLLQQKSIEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELADA 139
Query: 381 IFRYSSNIGAAQIADAMGI-QGHKEFLYRLG 410
RYS N I +G + K+ L ++G
Sbjct: 140 SLRYSDNTAQNLILKQIGGPESLKKELRKIG 170
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium; 2.10A {Rhodopseudomonas palustris CGA009}
SCOP: c.66.1.52
Length = 387
Score = 30.2 bits (67), Expect = 1.4
Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 304 DYDPHEAFKGKKEGWFNRISYG--IFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKV 361
+ + G I ++ S + A I D+ DT I
Sbjct: 200 EALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIAS 259
Query: 362 GKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPE 421
+ HP LT F + A A G FL RLG+ ++
Sbjct: 260 HSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRAL----S 315
Query: 422 IQAPSYPSQWKRIHS 436
+ A + P + I
Sbjct: 316 LMAKATPQVSEDIAG 330
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance;
1.85A {Streptomyces albus G} SCOP: e.3.1.1
Length = 266
Score = 30.2 bits (67), Expect = 1.5
Identities = 47/320 (14%), Positives = 82/320 (25%), Gaps = 79/320 (24%)
Query: 268 VHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIF 327
+ L ++ A +G + +G ++ Y E F
Sbjct: 3 AERRLAGLERASGAR-LGVYAYDTGSGRTVA------YRADELF---------------- 39
Query: 328 EMGSIFKVFTIAMGID----SGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPE--- 380
M S+FK + A + +G F + + T++ ++ PQN +
Sbjct: 40 PMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGAPETGKPQNLANGMTVEEL 99
Query: 381 ---IFRYSSNIGAAQIADAMG-IQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHS 436
S N A + +G F+ LG ++ R
Sbjct: 100 CEVSITASDNCAANLMLRELGGPAAVTRFVRSLGD---------------RVTRLDRWEP 144
Query: 437 LTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRS 496
S G T GRL+ + + S
Sbjct: 145 ELNSAEPGRVTDTTSPRAITRTY---GRLVLGDALNPRDRRL---------------LTS 186
Query: 497 LLREGVTGGSGRRAFVP-GFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVL 555
L T G RA +P + +G KTG N +P ++
Sbjct: 187 WLLANTTSGDRFRAGLPDDWTLGDKTGA---------GRYGTNNDAGVTWPPGRAPIVLT 237
Query: 556 SFMDSPK--IKERNQLTAGI 573
+ + L A
Sbjct: 238 VLTAKTEQDAARDDGLVADA 257
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, unknown function; NMR {Nostoc SP}
Length = 94
Score = 29.4 bits (66), Expect = 2.2
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 139 EPHKVISPDEIIEKLQIVLPNLDSEMIRRKL----SSETKFQWLRR 180
+P + ++ E++EKL+ L + + +L S + Q L
Sbjct: 19 QPEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQAQHLID 64
>3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta sandwich; 1.91A {Yersinia pestis}
Length = 351
Score = 29.3 bits (65), Expect = 2.5
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIF 382
+ + SI K+ T + D G+ + D P K V + + + + +
Sbjct: 57 LIRIASITKLMTSEIMVKLADDGIVKLTDPLKKYAP----KGVNVPSYSAKQPIRLLHLA 112
Query: 383 RYSSNIGAAQIADAMGIQGHKEFLY--RLGLLSKLETELPEIQAPSYPSQW 431
++S + Q R L + +P +Y +
Sbjct: 113 SHTSGLPREQPGGPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLA 163
Score = 28.9 bits (64), Expect = 3.0
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 442 GHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREG 501
G+ +TP + P RE++ R + SL
Sbjct: 226 SGGIYSTPEDMQHWMQQFLASDNSAPKR--SAKREQALYFQR--------GDLVSLKGMD 275
Query: 502 VTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSP 561
V G + G+ +++K F +++A+ P + V+
Sbjct: 276 VAGQADALGL--GWVYMAPKADLPGIMQK-TXXXXXFITYMAMVPEKNIGVFVVVTRSQL 332
Query: 562 KIKERNQLTAGINVAPMVGNIIR 584
+ + ++ G+N +V +++
Sbjct: 333 --TKFSNMSDGVN--QLVAELVK 351
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription
regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Length = 110
Score = 29.3 bits (65), Expect = 2.7
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 172 ETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSR 206
E+ +LRRK+ +++ + + L GVG+ L + R
Sbjct: 76 ESYVSYLRRKIDTGEKRLLHT--LRGVGYVLREPR 108
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Length = 307
Score = 28.6 bits (63), Expect = 4.0
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 145 SPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRRKLSPQQQKRILSF 193
+P ++ + + L S K L+R L P + +
Sbjct: 255 TPASLLAAYD----ACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7;
2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 27.9 bits (61), Expect = 6.2
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 446 STTPLQTAVAAAALINEGRLIPPTFMIRSREE-----SEKVSRIVLKKNTVKTMRSLLR 499
S T L T +N+G+L + + +E ++S L V T+ LL+
Sbjct: 97 SMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQ 155
>2dfb_A Endo-1,4-beta-xylanase 2; BENT beta sheet, hydrolase; 1.11A
{Hypocrea jecorina} SCOP: b.29.1.11 PDB: 1red_A* 1ree_A*
1ref_A* 1xyo_A 1xyp_A 1enx_A 2dfc_A 2jic_A 2d97_A*
2d98_A* 1xnd_A
Length = 190
Score = 27.7 bits (62), Expect = 7.1
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 511 FVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFP-TTDPQ---YIVLSF 557
FV G G + GT KVI S N NS+L+V+ + +P YIV +F
Sbjct: 45 FVGG--KGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSRNPLIEYYIVENF 93
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP:
d.3.1.1 PDB: 1y4h_A
Length = 183
Score = 27.9 bits (62), Expect = 7.3
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 176 QWLRRKLSPQQQKRILSFGLPG--VGFRLEKSRFYPAASHASHVVGYVDIDNR 226
+ S Q ++ + + + ++ P HA VVG I+++
Sbjct: 91 HYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQ 143
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 27.7 bits (61), Expect = 7.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 148 EIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRR--KLSPQQQKRILS 192
I+ L I ++D +IR + L + Q + IL
Sbjct: 642 HILAGLLIAYLDID-TVIRIIREEDQPKPVLMEHFNIDEIQAEAILE 687
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate,
T-state; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 27.7 bits (62), Expect = 7.8
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 89 AIRIIQYGNIHP--EPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPH---KV 143
+++ + + I +N+ M R D+I L+ D P
Sbjct: 26 GFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNR 85
Query: 144 ISPDEIIEKLQIVLPN 159
I E++ K + LP
Sbjct: 86 IDNYEVVGKSRPSLPE 101
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid,
hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP:
e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A*
1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A
1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A*
1xgi_A* ...
Length = 358
Score = 27.7 bits (60), Expect = 7.8
Identities = 36/289 (12%), Positives = 76/289 (26%), Gaps = 55/289 (19%)
Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRN------------------------P 358
+FE+GS+ K FT I G + D P
Sbjct: 56 LFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLP 115
Query: 359 IKVGKHVIHDYHPQNRILTIPEIF---------RYSSNIGAAQIADAMGIQGHKEFLYRL 409
++V V + S + A G+ + R+
Sbjct: 116 LQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRV 175
Query: 410 GLLSKLE---TELPEIQAPSYPSQWKRIHSLTISF------GHGLSTTPLQTAVAAAALI 460
KL +P + +Y ++ ++ +S +G+ +T A + +
Sbjct: 176 FQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNL 235
Query: 461 NEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGK 520
+ T ++ + + +L V S + +
Sbjct: 236 KPLDINEKT--LQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDAKIALAAR 293
Query: 521 TGTAQKVIKKRYSDTL--------NFNSFLAVFPTTDPQYIVLSFMDSP 561
A + F S++A P + ++L+ + P
Sbjct: 294 PVKAITPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYP 342
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn-
helix motif, DNA-binding domain, phosphorylation,
transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A
2d1v_A
Length = 120
Score = 27.8 bits (61), Expect = 8.3
Identities = 11/72 (15%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 135 SLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRRKL--SPQQQKRILS 192
L +V++ + +++ + + + + + LR K+ P + I++
Sbjct: 47 YLSKHMGQVMTREHLLQTVW------GYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVT 100
Query: 193 FGLPGVGFRLEK 204
GVG+ L++
Sbjct: 101 --RRGVGYFLQQ 110
>2hwv_A DNA-binding response regulator VICR; essential response regulator,
C-terminal domain, DNA- binding domain, transcription;
1.90A {Enterococcus faecalis V583}
Length = 121
Score = 27.4 bits (60), Expect = 8.6
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 135 SLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRRKL--SPQQQKRILS 192
L +V++ + +++ + + + + + LR K+ SP +++
Sbjct: 54 YLAKHIGQVMTREHLLQTVW------GYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVT 107
Query: 193 FGLPGVGFRLE 203
GVG+ L
Sbjct: 108 --RRGVGYYLR 116
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Length = 311
Score = 27.5 bits (60), Expect = 9.2
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 145 SPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRRKLSPQQQKRILSF 193
+ +++ SE + KL S K+ L+R L P + I
Sbjct: 259 TVSSLLQAYD----KCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.401
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,273,969
Number of extensions: 260090
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 69
Length of query: 598
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 500
Effective length of database: 3,317,318
Effective search space: 1658659000
Effective search space used: 1658659000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)