Query         gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs    143 out of 371
Neff          5.9 
Searched_HMMs 39220
Date          Mon May 30 05:29:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781104.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG5462 Predicted secreted (pe  99.9 2.7E-23 6.8E-28  162.5  10.4  113    1-114     1-113 (138)
  2 TIGR02209 ftsL_broad cell divi  98.8 1.5E-07 3.8E-12   66.5  10.6   82    2-86      1-82  (85)
  3 pfam04999 FtsL Cell division p  98.4 6.5E-06 1.7E-10   56.5  10.1   82    3-87     13-94  (97)
  4 COG4839 FtsL Protein required   97.8 0.00028 7.2E-09   46.5  10.0   74    4-79     39-112 (120)
  5 PRK10772 cell division protein  97.8 0.00056 1.4E-08   44.7  10.4   80    4-86     37-116 (121)
  6 COG3116 FtsL Cell division pro  97.4  0.0038 9.6E-08   39.6  10.5   84    1-87     19-102 (105)
  7 PRK00888 ftsB cell division pr  96.6   0.037 9.5E-07   33.6   9.8   74    2-78      1-78  (105)
  8 pfam04977 DivIC Septum formati  96.3   0.021 5.3E-07   35.1   7.0   52   25-79     17-69  (80)
  9 pfam12097 DUF3573 Protein of u  94.0    0.25 6.3E-06   28.5   6.5   60    1-60      1-63  (375)
 10 PRK09039 hypothetical protein;  89.4     1.8 4.7E-05   23.3   7.0   53    5-57     26-78  (343)
 11 pfam11853 DUF3373 Protein of u  87.1     1.5 3.7E-05   23.8   5.0   51    1-52      1-51  (485)
 12 PRK09973 putative outer membra  84.4     3.2 8.1E-05   21.8   5.6   39   22-60     28-66  (85)
 13 COG2919 Septum formation initi  82.9       4  0.0001   21.2  10.5   61   14-77     39-100 (117)
 14 PRK11677 cytochrome d ubiquino  80.2       5 0.00013   20.6   8.2   70    1-73      1-72  (134)
 15 pfam03245 Phage_lysis Bacterio  79.8     5.2 0.00013   20.5   9.6   62    1-75      1-70  (151)
 16 TIGR00593 pola DNA polymerase   78.8     5.3 0.00014   20.4   5.1   58   23-83    618-675 (1005)
 17 TIGR01710 typeII_sec_gspG gene  75.5     6.8 0.00017   19.8   5.5   88    2-96      3-90  (137)
 18 PRK08928 consensus              74.8     5.2 0.00013   20.5   4.1   58   23-83    478-535 (861)
 19 COG0749 PolA DNA polymerase I   72.9     5.5 0.00014   20.3   3.8   61   23-86    209-270 (593)
 20 PRK08434 consensus              70.1     8.7 0.00022   19.1   4.3   58   23-83    510-567 (887)
 21 TIGR01711 gspJ general secreti  69.5     9.5 0.00024   18.9   7.6   51    7-57      9-59  (202)
 22 pfam10066 DUF2304 Uncharacteri  69.5     9.5 0.00024   18.9   7.2   45    3-47     64-108 (115)
 23 PRK05929 consensus              66.9     4.8 0.00012   20.7   2.5   55   26-83    495-549 (870)
 24 PRK07625 consensus              66.3     9.2 0.00023   19.0   3.8   57   23-82    539-595 (922)
 25 pfam05137 PilN Fimbrial assemb  65.6      11 0.00029   18.4   8.7   76   16-98     33-109 (162)
 26 pfam10828 DUF2570 Protein of u  65.3      12 0.00029   18.4   8.1   42    1-42      1-42  (110)
 27 COG3883 Uncharacterized protei  64.9      12  0.0003   18.3   7.2   55    1-55      1-75  (265)
 28 pfam00476 DNA_pol_A DNA polyme  63.6      12 0.00031   18.3   4.0   54   27-83      3-56  (383)
 29 TIGR03064 sortase_srtB sortase  62.5     7.5 0.00019   19.5   2.8   37    3-39      4-40  (232)
 30 PRK08786 consensus              61.3     9.4 0.00024   18.9   3.1   55   25-82    546-600 (927)
 31 PRK05755 DNA polymerase I; Pro  61.3      11 0.00028   18.5   3.5   56   24-82    509-564 (889)
 32 PRK08835 consensus              61.2      10 0.00026   18.7   3.3   55   25-82    549-603 (931)
 33 PRK07997 consensus              59.2     8.1 0.00021   19.3   2.5   56   26-84    548-603 (928)
 34 PRK06887 consensus              57.4      12 0.00031   18.2   3.2   54   26-82    575-628 (954)
 35 PRK08076 consensus              55.9      11 0.00029   18.4   2.8   56   24-82    495-550 (877)
 36 pfam06305 DUF1049 Protein of u  55.3      17 0.00044   17.3   7.1   21   23-43     58-78  (80)
 37 PRK07300 consensus              55.2      14 0.00035   17.9   3.1   51   24-77    496-546 (880)
 38 PRK07556 consensus              52.6      15 0.00037   17.8   2.9   55   26-83    592-646 (977)
 39 pfam11336 DUF3138 Protein of u  50.4      18 0.00045   17.2   3.1   34   27-60     20-53  (514)
 40 PRK05797 consensus              49.5      17 0.00044   17.3   2.9   57   24-83    488-544 (869)
 41 PRK07456 consensus              49.1      22 0.00055   16.7   3.6   56   23-81    575-630 (975)
 42 pfam11382 DUF3186 Protein of u  48.9      22 0.00056   16.7   7.3   36   24-59     31-66  (307)
 43 PRK07898 consensus              47.3      23 0.00059   16.5   3.5   54   25-81    520-573 (902)
 44 COG3917 NahD 2-hydroxychromene  45.9      10 0.00026   18.7   1.2   37   53-90     18-54  (203)
 45 PRK00575 tatA twin arginine tr  45.4      25 0.00063   16.4   5.2   48    2-49      4-51  (88)
 46 pfam06667 PspB Phage shock pro  44.9      25 0.00064   16.3   5.9   38   16-53     21-63  (75)
 47 pfam10805 DUF2730 Protein of u  42.8      27 0.00069   16.1   8.8   58   12-69     14-72  (106)
 48 pfam07665 consensus             42.7      27  0.0007   16.1   6.0   40   21-60      8-47  (57)
 49 PRK08307 stage III sporulation  42.3      28 0.00071   16.1   7.6   60    1-69      1-62  (172)
 50 pfam08172 CASP_C CASP C termin  41.1      29 0.00074   16.0   5.7   45   23-69     91-135 (245)
 51 pfam07047 OPA3 Optic atrophy 3  41.0      29 0.00074   15.9   7.3   44   10-55     85-128 (134)
 52 pfam01166 TSC22 TSC-22/dip/bun  40.7      29 0.00075   15.9   7.4   41   29-69     11-54  (57)
 53 KOG0842 consensus               38.9      31  0.0008   15.7   3.5   35   38-81    162-196 (307)
 54 PRK13455 F0F1 ATP synthase sub  37.7      33 0.00083   15.6   8.7   43    7-49     33-75  (184)
 55 smart00338 BRLZ basic region l  36.7      34 0.00087   15.5   5.7   38   23-60     24-61  (65)
 56 pfam05680 ATP-synt_E ATP synth  36.5      34 0.00087   15.5   7.4   53   11-68     17-70  (81)
 57 KOG4797 consensus               36.5      34 0.00087   15.5   7.3   41   30-70     65-108 (123)
 58 pfam07219 HemY_N HemY protein   35.7      33 0.00084   15.6   2.6   14   60-73    100-113 (134)
 59 cd01279 HTH_HspR-like Helix-Tu  34.8      36 0.00093   15.3   4.2   36   28-63     61-96  (98)
 60 COG2456 Uncharacterized conser  32.4      40   0.001   15.1   5.2   36    8-43     76-111 (121)
 61 COG3167 PilO Tfp pilus assembl  32.2      40   0.001   15.1   7.6   19    5-23     27-45  (211)
 62 TIGR01411 tatAE twin arginine-  32.2      40   0.001   15.1   3.5   46    1-46      1-47  (48)
 63 pfam07106 TBPIP Tat binding pr  31.0      42  0.0011   15.0   5.4   38   25-62     72-109 (169)
 64 KOG0488 consensus               29.6      44  0.0011   14.8   3.7   37   40-88    183-219 (309)
 65 pfam06295 DUF1043 Protein of u  29.4      45  0.0011   14.8   8.0   64    7-73      3-68  (128)
 66 COG3322 Predicted periplasmic   28.4      47  0.0012   14.7   7.9   34   25-58     42-75  (295)
 67 TIGR02238 recomb_DMC1 meiotic   28.1      31 0.00078   15.8   1.4   12   60-71    143-154 (314)
 68 PRK09458 pspB phage shock prot  27.7      48  0.0012   14.6   6.9   39   15-53     20-63  (75)
 69 CHL00167 consensus              27.4      49  0.0012   14.6   8.4   53    5-57     37-89  (182)
 70 pfam05545 FixQ Cbb3-type cytoc  27.1      47  0.0012   14.6   2.2   23    4-26     13-35  (49)
 71 pfam10925 DUF2680 Protein of u  26.8      50  0.0013   14.5   3.9   34   27-60      2-35  (59)
 72 COG5509 Uncharacterized small   26.3      51  0.0013   14.5   3.8   25   33-57     26-50  (65)
 73 COG2143 Thioredoxin-related pr  25.5      53  0.0013   14.4   2.6   22    1-22      1-22  (182)
 74 PRK00442 tatA twin arginine tr  23.5      58  0.0015   14.1   3.6   44    3-46      5-48  (90)
 75 pfam06720 Phi-29_GP16_7 Bacter  23.4      58  0.0015   14.1   5.4   34   23-56     25-58  (130)
 76 TIGR01061 parC_Gpos DNA topois  23.1      59  0.0015   14.1   5.6   68   20-91    429-499 (745)
 77 COG3416 Uncharacterized protei  23.0      59  0.0015   14.1   5.1   49   19-69     42-90  (233)
 78 TIGR01242 26Sp45 26S proteasom  22.8      60  0.0015   14.0   5.5   47   22-68      3-49  (364)
 79 pfam03978 Borrelia_REV Borreli  21.5      63  0.0016   13.9   9.2   71    5-75      7-86  (160)
 80 PRK09173 F0F1 ATP synthase sub  21.3      64  0.0016   13.9   8.3   43    7-49      8-50  (159)
 81 pfam11488 Lge1 Transcriptional  21.1      64  0.0016   13.8   5.2   35   26-60    178-212 (234)
 82 pfam09889 DUF2116 Uncharacteri  21.0      65  0.0017   13.8   2.5   21    2-22     36-56  (59)
 83 PRK04561 tatA twin arginine tr  20.4      67  0.0017   13.7   3.4   44    2-45      4-47  (75)
 84 smart00394 RIIa RIIalpha, Regu  20.1      50  0.0013   14.5   1.2   20   58-77     16-35  (38)

No 1  
>COG5462 Predicted secreted (periplasmic) protein [Function unknown]
Probab=99.90  E-value=2.7e-23  Score=162.46  Aligned_cols=113  Identities=36%  Similarity=0.614  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEC
Q ss_conf             91189999999999999999999999999999999999999999999999999999718979999999987764185405
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQAT   80 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi   80 (125)
                      |+|+|+++.+++++..++.+|.||+++.....+++++.++|+.|++.|.+||||||||++|.||++||..|..+|+|+|+
T Consensus         1 mlRtfdivli~imv~Aa~vtysIK~~ae~~l~~vrkl~~qI~sE~dtIdlLkAdwAlLtqP~RLekLa~aY~t~L~Lepv   80 (138)
T COG5462           1 MLRTFDIVLIAIMVAAATVTYSIKHEAETQLAEVRKLHAQIKSEEDTIDLLKADWALLTQPNRLEKLAAAYKTELKLEPV   80 (138)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             95146779999999999998768888888999999999998412112789998599970816899999999977346746


Q ss_pred             CHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             8888322888565543357864545401444421
Q gi|254781104|r   81 NPINLITYDDLARLKKHTLLPENRSNLPKRTVER  114 (125)
Q Consensus        81 ~p~qi~~~~~l~~~~~~~~~~~~~~~~~~~~~~r  114 (125)
                      .|.|++....+|++....+ +....++.+...+|
T Consensus        81 ~s~Qlv~~~~~P~l~~~lp-~~~~~~i~k~~~~r  113 (138)
T COG5462          81 KSTQLVGPPELPMLRSDLP-FNPNIDIQKILDGR  113 (138)
T ss_pred             CHHHHCCCCCCCCHHHHCC-CCCCHHHHHHHHHH
T ss_conf             7787518833443665289-99971388888889


No 2  
>TIGR02209 ftsL_broad cell division protein FtsL; InterPro: IPR011922    This entry represents FtsL, both forms similar to that in Escherichia coli and similar to that in Bacillus subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent , .; GO: 0007049 cell cycle, 0051301 cell division, 0016021 integral to membrane.
Probab=98.75  E-value=1.5e-07  Score=66.47  Aligned_cols=82  Identities=22%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECC
Q ss_conf             11899999999999999999999999999999999999999999999999999997189799999999877641854058
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATN   81 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~   81 (125)
                      +++++++.+++++++++.+-..+|.++..-.++.+++.++...+...+-|+.|-+-|++|+|++++|+.   +|||.|..
T Consensus         1 ~~~l~~~l~~~~l~~a~~~v~~~~~~r~~~~e~~~~~~~~~~~~~e~~~L~lE~~~L~~~~Ri~~iA~~---~L~m~~~~   77 (85)
T TIGR02209         1 EKKLYVLLLLAILVSAISVVSVQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKK---QLGMKLPD   77 (85)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HCCCCCCC
T ss_conf             917999999999999999999999999999999999999999999999899999860148899999998---65899876


Q ss_pred             HHHCC
Q ss_conf             88832
Q gi|254781104|r   82 PINLI   86 (125)
Q Consensus        82 p~qi~   86 (125)
                      +++-.
T Consensus        78 ~~~~~   82 (85)
T TIGR02209        78 ANIKV   82 (85)
T ss_pred             CCCEE
T ss_conf             55401


No 3  
>pfam04999 FtsL Cell division protein FtsL. In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein pfam04977, however this interaction may be indirect.
Probab=98.36  E-value=6.5e-06  Score=56.49  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             18999999999999999999999999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r    3 KTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus         3 r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      .++.++++++++++|+.+-...|.++..-.++.+++.+-...+.+-.-|..|-+.+++|.|++.+|.   +.|+|.+..+
T Consensus        13 ~~l~i~L~~~v~~SAl~vV~~~h~~R~l~~~l~~l~~e~~~L~~ew~~L~LEqstla~~~RIe~~A~---~~L~M~~P~~   89 (97)
T pfam04999        13 GKLLLLLLLLVLVSAVGVVYSTHQTRQLTSELQKLLQERDRLEIEWGNLLLEQSTLAEHSRVERIAR---EQLGMKRPDP   89 (97)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH---HCCCCCCCCC
T ss_conf             8899999999999999999999998999999999999999999999999999998614767999998---6479999998


Q ss_pred             HHCCC
Q ss_conf             88322
Q gi|254781104|r   83 INLIT   87 (125)
Q Consensus        83 ~qi~~   87 (125)
                      ++++-
T Consensus        90 ~~~v~   94 (97)
T pfam04999        90 EQEVI   94 (97)
T ss_pred             CCEEE
T ss_conf             76665


No 4  
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=97.83  E-value=0.00028  Score=46.51  Aligned_cols=74  Identities=23%  Similarity=0.222  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf             8999999999999999999999999999999999999999999999999999971897999999998776418540
Q gi|254781104|r    4 TLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQA   79 (125)
Q Consensus         4 ~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~P   79 (125)
                      .|++..+.+++.++++.-..++.+-....+|..|+..|.+++.++..|+-|-.-|+||+|+-+.|+..  .|+|.+
T Consensus        39 vly~~~~va~L~vai~ii~~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk~--gLkl~~  112 (120)
T COG4839          39 VLYTTLAVAALVVAISIISVQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKKA--GLKLNN  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC--CCCCCC
T ss_conf             99999999999999999999999999976999999999999843006999999845688999999875--666787


No 5  
>PRK10772 cell division protein FtsL; Provisional
Probab=97.75  E-value=0.00056  Score=44.70  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             89999999999999999999999999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r    4 TLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus         4 ~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      +..+++++++++.|+.+-.+-|.|+.+-.+..+|..+=.....+-.-|..|-+-|+...|++.+|.   +.|+|.+..|+
T Consensus        37 Kl~llLli~Vl~SAl~VV~~tH~TR~l~~e~e~L~~erd~Ld~EW~nL~LEqstl~~hsRIE~~A~---~~L~M~~pdp~  113 (121)
T PRK10772         37 KLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT---EKLQMQHVDPS  113 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCC
T ss_conf             099999999999989999998898999988999999999999999999999986221658999999---85598369941


Q ss_pred             HCC
Q ss_conf             832
Q gi|254781104|r   84 NLI   86 (125)
Q Consensus        84 qi~   86 (125)
                      |-+
T Consensus       114 qEv  116 (121)
T PRK10772        114 QEN  116 (121)
T ss_pred             CCE
T ss_conf             044


No 6  
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=97.38  E-value=0.0038  Score=39.64  Aligned_cols=84  Identities=14%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEC
Q ss_conf             91189999999999999999999999999999999999999999999999999999718979999999987764185405
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQAT   80 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi   80 (125)
                      |++++.++++++++..|..+-..-|.|+.+-.+..++..+=...+.+-.-|..|-+-+..-.|++.+|.   +.|+|+-.
T Consensus        19 ~~~kl~l~LLi~ivlsAi~vv~~tH~tRqL~~e~~~~~~er~~L~~EwrnLilEe~tl~~hsRVe~iAr---eqL~M~~p   95 (105)
T COG3116          19 TSGKLPLLLLIAIVLSAIGVVYTTHHTRQLIAELEQLVLERDALNIEWRNLILEENTLGDHSRVESIAR---EQLKMKHP   95 (105)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCC
T ss_conf             427199999999999999999999999999987589999999987599988988875345778999999---98467789


Q ss_pred             CHHHCCC
Q ss_conf             8888322
Q gi|254781104|r   81 NPINLIT   87 (125)
Q Consensus        81 ~p~qi~~   87 (125)
                      .|.|.+-
T Consensus        96 d~~qe~~  102 (105)
T COG3116          96 DPAQEVI  102 (105)
T ss_pred             CHHHHHH
T ss_conf             8576443


No 7  
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=96.59  E-value=0.037  Score=33.56  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCC
Q ss_conf             11899999999999999999999---999999999999999999999999999999997189-79999999987764185
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYSIK---HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ-PDRIKDLVSLYQKELQL   77 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~iK---~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~-P~RL~~La~~y~~~L~L   77 (125)
                      ||.+.++++++++.+-+..+.-+   .+...+.+++..++.++...+++-..|++|-..|.+ ++-++..|+.   +|||
T Consensus         1 Mr~l~~~L~~ll~~LQY~lwfg~~g~~~~~~L~~~i~~~~~~n~~L~~~N~~L~~EI~~Lk~~~~aIE~~AR~---eLGm   77 (105)
T PRK00888          1 MRLLTLVLLALLVWLQYPLWFGKNGWLDYHRLNQQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN---ELGM   77 (105)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HCCC
T ss_conf             9669999999999999999404896999999999999999999999999999999999987787999999999---8698


Q ss_pred             E
Q ss_conf             4
Q gi|254781104|r   78 Q   78 (125)
Q Consensus        78 ~   78 (125)
                      -
T Consensus        78 I   78 (105)
T PRK00888         78 V   78 (105)
T ss_pred             C
T ss_conf             6


No 8  
>pfam04977 DivIC Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.
Probab=96.29  E-value=0.021  Score=35.14  Aligned_cols=52  Identities=19%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCEE
Q ss_conf             9999999999999999999999999999999971-897999999998776418540
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALL-IQPDRIKDLVSLYQKELQLQA   79 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL-~~P~RL~~La~~y~~~L~L~P   79 (125)
                      .....+.+++..++.++...+++...|++|-..| ++|+.+++.|+.   +|||.-
T Consensus        17 ~~~~~l~~~i~~l~~~~~~l~~~n~~L~~ei~~L~~d~~~ie~~AR~---~lg~~~   69 (80)
T pfam04977        17 SAYYQLNQEIAALQAELAKLKAENEELEAEVKDLKSDPDYIEERARS---ELGLVK   69 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HCCCCC
T ss_conf             99999999999999999999999999999999850899999999999---859838


No 9  
>pfam12097 DUF3573 Protein of unknown function (DUF3573). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=93.98  E-value=0.25  Score=28.54  Aligned_cols=60  Identities=20%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             91189999999999999999999999---9999999999999999999999999999997189
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHE---TEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~---t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      |+++..++.++++++....-....|.   +.+..++-.-.+++|.+++..|+.|++|-.+|..
T Consensus         1 ~f~K~~li~~~~l~~s~~~~~~~s~~~~~~~q~~~s~~~~~~~i~~Lq~QI~~Lq~eIn~l~~   63 (375)
T pfam12097         1 MFIKKLLILIFFLTISFLFFIGRSYAVVNAIQQTDSNQIDKKDISKLQKQIKSLQAQINHLEE   63 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             916778899999999987500046533334422748775388999999999999999987775


No 10 
>PRK09039 hypothetical protein; Validated
Probab=89.38  E-value=1.8  Score=23.27  Aligned_cols=53  Identities=17%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999997
Q gi|254781104|r    5 LDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWAL   57 (125)
Q Consensus         5 ~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEway   57 (125)
                      +.++.+|++++..+.-|...+.....+..+..|+++|....+.+..-+.+-+.
T Consensus        26 LLmViIFvL~IFvv~Q~~Lsq~lsgqd~~L~~L~~qia~L~~~L~Ler~~~~~   78 (343)
T PRK09039         26 LLLVIMFLLTVFVVAQFFLSQEISGKDKALDRLNAQIAELADLLSLERQGNQD   78 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999997255999999999999999998765655456


No 11 
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=87.13  E-value=1.5  Score=23.84  Aligned_cols=51  Identities=14%  Similarity=0.139  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9118999999999999999999999999999999999999999999999999
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLK   52 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~Lk   52 (125)
                      |.+++.+++..+++++...++-. ..-..++++|..|++|+.+.++++..++
T Consensus         1 Mkk~~~l~~~aall~~s~~~~a~-~~d~~~~qkI~~L~~ql~eLk~~~~~~~   51 (485)
T pfam11853         1 MKKLVSLSLVAALLALSLPAAAA-AADIDLLQKIEALKKELAELKAQLKDLN   51 (485)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91147899999999750410013-4434499999999999999999999877


No 12 
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=84.41  E-value=3.2  Score=21.79  Aligned_cols=39  Identities=13%  Similarity=0.078  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999999999997189
Q gi|254781104|r   22 SIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        22 ~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      ....+++.+..+|.+|+.+|...+-.+...|.|-+.-|+
T Consensus        28 qLsSdVqtLN~KVdqLs~Dv~alr~~vqaAK~EAaRANq   66 (85)
T PRK09973         28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANT   66 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998889999999999998899876999998889998874


No 13 
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=82.93  E-value=4  Score=21.19  Aligned_cols=61  Identities=11%  Similarity=0.000  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999999999999999999971897-9999999987764185
Q gi|254781104|r   14 LASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP-DRIKDLVSLYQKELQL   77 (125)
Q Consensus        14 i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P-~RL~~La~~y~~~L~L   77 (125)
                      ...+.+.-.-...+.....++...+++......+...|++|-.-|++. +-+++.|..   .|++
T Consensus        39 ~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~---~l~~  100 (117)
T COG2919          39 QYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARS---ELGM  100 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHCC
T ss_conf             9999998705999999999999999999999878999999998703537899999999---8288


No 14 
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=80.24  E-value=5  Score=20.60  Aligned_cols=70  Identities=10%  Similarity=0.138  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH
Q ss_conf             91189999999999999999999999999999999999999999999999999999--71897999999998776
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWA--LLIQPDRIKDLVSLYQK   73 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwa--yL~~P~RL~~La~~y~~   73 (125)
                      |...+-++++++-++.|++..+.   +....++..+|++++...+.++...+.|.+  +-.+-+=+..|++-|.+
T Consensus         1 M~W~~ali~lvvGiiIG~~~~R~---~~~~~~~q~~Le~eLe~~k~el~~Yr~ev~~HF~~tA~Ll~~l~~~Y~~   72 (134)
T PRK11677          1 MTWEYALIGLVVGIIIGAVAMRF---GNRKLRQQQALQYELEKNKAELEEYRQELVDHFARSAELLDTMAKDYRQ   72 (134)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92899999999999999999998---1751167999999999999999999999999999999999999999999


No 15 
>pfam03245 Phage_lysis Bacteriophage lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database.
Probab=79.81  E-value=5.2  Score=20.52  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             91189999999999999999---999999-----9999999999999999999999999999997189799999999877
Q gi|254781104|r    1 MFKTLDFIILGVVLASITIT---YSIKHE-----TEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQ   72 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~---y~iK~~-----t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~   72 (125)
                      |-|++.+++++++++++.+.   |.-+..     ..+...++...+..|...+.++.             .+..|-.+|.
T Consensus         1 m~rl~~~iia~~i~l~~al~w~hy~~~a~~~k~q~~~~~~~l~~~~a~i~~~q~r~r-------------~la~LD~k~t   67 (151)
T pfam03245         1 MSRLLAILIAVLIALLLALAWATYRDNADTAERQRDQATAELALANATIEDMQTRQR-------------DLAALDAKHT   67 (151)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_conf             933799999999999999999999877999999999999999999979999999999-------------9999978999


Q ss_pred             HHH
Q ss_conf             641
Q gi|254781104|r   73 KEL   75 (125)
Q Consensus        73 ~~L   75 (125)
                      ++|
T Consensus        68 kEL   70 (151)
T pfam03245        68 KEL   70 (151)
T ss_pred             HHH
T ss_conf             999


No 16 
>TIGR00593 pola DNA polymerase I; InterPro: IPR002298   DNA carries the biological information that instructs cells how to exist in an ordered fashion. Accurate replication is thus one of the most important events in the cell life cycle. This function is mediated by DNA-directed DNA polymerases, which add nucleotide triphosphate (dNTP) residues to the 5'-end of the growing DNA chain, using a complementary DNA as template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used. DNA-dependent DNA polymerases have been grouped into families, denoted A, B and X, on the basis of sequence similarities , . Members of family A, which includes bacterial and bacteriophage polymerases, share significant similarity to Escherichia coli polymerase I; hence family A is also known as the pol I family. The bacterial polymerases also contain an exonuclease activity, which is coded for in the N-terminal portion. Three motifs, A, B and C , are seen to be conserved across all DNA polymerases, with motifs A and C also seen in RNA polymerases. They are centred on invariant residues, and their structural significance was implied from the Klenow (E. coli) structure. Motif A contains a strictly-conserved aspartate at the junction of a beta-strand and an alpha-helix; motif B contains an alpha-helix with positive charges; and motif C has a doublet of negative charges, located in a beta-turn-beta secondary structure .; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=78.81  E-value=5.3  Score=20.43  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             9999999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      |+-+...+..==.++..+|....++|..+=-+|-.||||+-|+..=   |++|+|-+.+-.
T Consensus       618 i~~D~~~L~~L~~e~~~~l~~lE~~Iy~~aG~~FNinSPKQL~~vL---F~KL~Lp~~kK~  675 (1005)
T TIGR00593       618 IKVDKDYLQELSKEFGEELLDLEEEIYELAGEEFNINSPKQLGEVL---FEKLGLPVGKKT  675 (1005)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHHCCCCCCCC
T ss_conf             7870899999999999999999999998749520688733555886---998478820034


No 17 
>TIGR01710 typeII_sec_gspG general secretion pathway protein G; InterPro: IPR010054   This entry represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=75.54  E-value=6.8  Score=19.76  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECC
Q ss_conf             11899999999999999999999999999999999999999999999999999997189799999999877641854058
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATN   81 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~   81 (125)
                      |.++.++.+++++|+.+.+-.=|+-.+.=..+...-..+|...++.+...|.|--..  |..=|.|+.     |--.|..
T Consensus         3 FTLlE~~VVlvIlGLLaalv~P~l~s~~d~A~~~~a~~qi~~l~~ALd~yrLDng~y--Pt~eQGL~A-----LV~kP~~   75 (137)
T TIGR01710         3 FTLLEIMVVLVILGLLAALVVPKLFSQADKAKAQVAKAQIKALKNALDMYRLDNGRY--PTEEQGLAA-----LVKKPSG   75 (137)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHH-----HCCCCCC
T ss_conf             326788999999999999986553487553578889999999999987665662589--881578998-----2779587


Q ss_pred             HHHCCCHHHCCCCCC
Q ss_conf             888322888565543
Q gi|254781104|r   82 PINLITYDDLARLKK   96 (125)
Q Consensus        82 p~qi~~~~~l~~~~~   96 (125)
                      +.+=.++..=|+++.
T Consensus        76 ~p~P~~W~~DgYl~k   90 (137)
T TIGR01710        76 EPLPKNWKGDGYLRK   90 (137)
T ss_pred             CCCCCCCCCCCCEEC
T ss_conf             668876188886425


No 18 
>PRK08928 consensus
Probab=74.79  E-value=5.2  Score=20.48  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             9999999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      |+-++..+.+--..++.+|...+++|..+--+=--+|||..|..+   -|++|+|-+.+-.
T Consensus       478 I~VD~~~L~~ls~el~~~l~~Le~~I~~lAG~eFNInSPKQLgeI---LFekL~Lp~~KKt  535 (861)
T PRK08928        478 IKVDANYLKQLSAEFGTEILKLEEEIYKLSGTKFNIASPKQLGEI---LFEKMGLPKGKKS  535 (861)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCCCCCCC
T ss_conf             601699999999999999999999999974987475999999999---7997299867767


No 19 
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=72.85  E-value=5.5  Score=20.34  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE-CCHHHCC
Q ss_conf             999999999999999999999999999999999971897999999998776418540-5888832
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQA-TNPINLI   86 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~P-i~p~qi~   86 (125)
                      |+-++..+...-..+..++....+.+..|-.|--.++||+.|+.+-   |+.|+|-| ....+.+
T Consensus       209 i~vD~~~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~IL---feKl~Lp~~~kKtktG  270 (593)
T COG0749         209 IKVDVQYLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEIL---FEKLGLPPGLKKTKTG  270 (593)
T ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH---HHHCCCCCCCCCCCCC
T ss_conf             5642999999999999999999999999826857899778999998---8851898555545789


No 20 
>PRK08434 consensus
Probab=70.07  E-value=8.7  Score=19.14  Aligned_cols=58  Identities=17%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             9999999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      |+-++..+.+--..+.++|...+++|..+--+=--+|||..|..+   -|++|+|-+.+-.
T Consensus       510 I~VD~~~L~~ls~el~~~i~~Le~~Iy~lAG~eFNInSPKQLgeI---LFekLgLp~~KKT  567 (887)
T PRK08434        510 IKLDTNFLEELKKKFEEEIKELTEEIYELCGEEFNINSTKQLGAV---LFEKLKLPSGKKT  567 (887)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCCCCCCC
T ss_conf             502699999999999999999999999855766477999999999---8986499888888


No 21 
>TIGR01711 gspJ general secretion pathway protein J; InterPro: IPR010055   This entry represents GspJ, one of two proteins highly conserved at their N-termini and described by Bacterial type II secretion system protein I/J but is easily separable phylogenetically. The other is the General secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in Escherichia coli K-12 - present but not yet demonstrated to act on any target.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=69.50  E-value=9.5  Score=18.90  Aligned_cols=51  Identities=10%  Similarity=0.139  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999997
Q gi|254781104|r    7 FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWAL   57 (125)
Q Consensus         7 ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEway   57 (125)
                      +++|.+|..+++.+|++=+.+..-++=-..=++-+.+++-...++.+|..=
T Consensus         9 LvAIAIFAsLs~gaYqvl~~V~~sde~~~~~eaRl~EL~rAm~~merD~tQ   59 (202)
T TIGR01711         9 LVAIAIFASLSLGAYQVLDSVLRSDEVAKKKEARLAELQRAMVLMERDLTQ   59 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999998875246789899887799999999998655563


No 22 
>pfam10066 DUF2304 Uncharacterized conserved protein (DUF2304). Members of this family of hypothetical archaeal proteins have no known function.
Probab=69.49  E-value=9.5  Score=18.90  Aligned_cols=45  Identities=9%  Similarity=0.103  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             189999999999999999999999999999999999999999999
Q gi|254781104|r    3 KTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNY   47 (125)
Q Consensus         3 r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~   47 (125)
                      |..+++.++.++++.+.+|..-.+..+.+.++.+|-++|+-.++.
T Consensus        64 rg~n~lf~~~i~~l~~~~f~l~~~is~le~~it~L~~~iAi~e~~  108 (115)
T pfam10066        64 RGLDALFYLGIGLLFYLLFKLYLKIDKLEREITKLVREIAIRERE  108 (115)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             301599999999999999999999999999999999999987256


No 23 
>PRK05929 consensus
Probab=66.86  E-value=4.8  Score=20.69  Aligned_cols=55  Identities=18%  Similarity=0.161  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             9999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      ++..+.+--..+.++|...+++|..+--+---+|||..|..   --|++|+|.|++-.
T Consensus       495 D~~~L~~ls~el~~~l~~Le~~I~~~AG~eFNinSPKQL~e---vLFekLgL~~~kKt  549 (870)
T PRK05929        495 DVEGLAVLERDLSKELAVLTQEIYDLAGCPFNIKSPKQLSD---ILYNRLGLRPIDKA  549 (870)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCCCCC
T ss_conf             19999989999999999999999997299988789899999---98986399988888


No 24 
>PRK07625 consensus
Probab=66.26  E-value=9.2  Score=18.98  Aligned_cols=57  Identities=12%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             999999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      |+-++..+.+.-..+.+++...+++|..+--+---+|||..|..+-   |++|+|-+++-
T Consensus       539 I~vD~~~L~~l~~~l~~~l~~le~~i~~~aG~eFNinSpkQL~~iL---Fe~L~Lp~~kK  595 (922)
T PRK07625        539 VLIDADRLSRQSGEIATRLLALEQEAYELAGGEFNLGSPKQIGQIF---FERLQLPVVKK  595 (922)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCCCC
T ss_conf             4026999999999999999999998777549977899999999999---98538987885


No 25 
>pfam05137 PilN Fimbrial assembly protein (PilN).
Probab=65.64  E-value=11  Score=18.42  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCEECCHHHCCCHHHCCCC
Q ss_conf             9999999999999999999999999999999999999999971897-999999998776418540588883228885655
Q gi|254781104|r   16 SITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP-DRIKDLVSLYQKELQLQATNPINLITYDDLARL   94 (125)
Q Consensus        16 l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P-~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l~~~   94 (125)
                      ++.+.+............+..|+.+|......++..+.-..-...= .|++.+...       +--++.-.--+++|+..
T Consensus        33 ~~~~~~~~~~~i~~q~~~~~~L~~ei~~L~~~i~ei~~l~~~~~~l~~r~~~i~~L-------q~~r~~~~~ll~~L~~~  105 (162)
T pfam05137        33 AFAGWLYLDNQIEAQQERNAFLRTQIQQLDGQLKEIQALKQERQALLERMKKIQEL-------QQNRPQTVRVFDELARL  105 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999-------97182689999999875


Q ss_pred             CCCC
Q ss_conf             4335
Q gi|254781104|r   95 KKHT   98 (125)
Q Consensus        95 ~~~~   98 (125)
                      .|+.
T Consensus       106 lP~g  109 (162)
T pfam05137       106 LPDG  109 (162)
T ss_pred             CCCC
T ss_conf             8997


No 26 
>pfam10828 DUF2570 Protein of unknown function (DUF2570). This is a family of proteins with unknown function.
Probab=65.30  E-value=12  Score=18.38  Aligned_cols=42  Identities=10%  Similarity=0.128  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             911899999999999999999999999999999999999999
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKIT   42 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~   42 (125)
                      |++.++..+.++++|++.|+..-......+..+-..=-.-|.
T Consensus         1 m~~~i~~~l~~lilgL~gwlw~QS~~Id~LrAen~~QaqtI~   42 (110)
T pfam10828         1 MSKYIKATLAALILGLGGWSWYQSQKIDSLRAENKAQAQTIE   42 (110)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             906899999999999999999998888999986788999999


No 27 
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.88  E-value=12  Score=18.33  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHHHH-HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             91189999999999999-999999999-------------------99999999999999999999999999999
Q gi|254781104|r    1 MFKTLDFIILGVVLASI-TITYSIKHE-------------------TEGKKEKLRILENKITSEQNYIDLLKAQW   55 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~-~~~y~iK~~-------------------t~~~~~ei~~L~~~I~~~~~~i~~LkAEw   55 (125)
                      |.|.+....+..++++. ++.+.+..+                   .+..+.+|..|..+|......+.-++.|.
T Consensus         1 M~kk~~~a~~~s~v~~s~~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i   75 (265)
T COG3883           1 MKKKILLAVLLSLVIISTAFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI   75 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             914899999999999998110002133533477766889999999999899999999999999999888789888


No 28 
>pfam00476 DNA_pol_A DNA polymerase family A.
Probab=63.59  E-value=12  Score=18.26  Aligned_cols=54  Identities=24%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   27 TEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        27 t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      +..+++--..+..++.....+|..+--+=--++||.-   |++..|++|+|.|....
T Consensus         3 ~~~l~~~~~~l~~~~~~l~~~i~~~aG~~fN~~S~~q---l~~vLf~~l~l~~~~~t   56 (383)
T pfam00476         3 VEYLEELSNELGAQLADLEFKIPELAGEEFNLGSPKQ---LGVLLFEELGLPKTKKT   56 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHCCCCCCCCC
T ss_conf             8999999999999999999999999599769999899---99984973599999977


No 29 
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=62.51  E-value=7.5  Score=19.51  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1899999999999999999999999999999999999
Q gi|254781104|r    3 KTLDFIILGVVLASITITYSIKHETEGKKEKLRILEN   39 (125)
Q Consensus         3 r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~   39 (125)
                      |++.++++++|+++++.+..+=++-....++-..++.
T Consensus         4 ~ii~iv~l~Vf~~s~~~l~~~~~~y~~~~~~~~~~~~   40 (232)
T TIGR03064         4 KSITLLFLIVFFYSLYKLGQIFYDYYTNRQVLAEAQQ   40 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999999999999999999887663699999998


No 30 
>PRK08786 consensus
Probab=61.28  E-value=9.4  Score=18.92  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             9999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      -++..+.+--..+.+++...+++|..+--+.--+|||..|+.+   -|++|+|-+.+-
T Consensus       546 vD~~~L~~l~~~l~~~l~~le~~I~~~aG~eFNinSpKQL~~i---LFekL~Lp~~kK  600 (927)
T PRK08786        546 VDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQAL---LFDELKLPAVVK  600 (927)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCCCCCC
T ss_conf             8899999999999999999999999970855578999999999---975028987873


No 31 
>PRK05755 DNA polymerase I; Provisional
Probab=61.27  E-value=11  Score=18.53  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             99999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      +-+...+.+--..++++|...++.|..+--+---+|||..|.   +--|++|+|-+.+-
T Consensus       509 ~VD~~~L~~ls~el~~~l~~le~~I~~~aG~eFNinSPKQL~---~iLFekL~Lp~~KK  564 (889)
T PRK05755        509 KVDREYLEELSAELAQRLAELEQEIYELAGEEFNLNSPKQLG---EILFEKLGLPVTKK  564 (889)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHHHCCCCCCCC
T ss_conf             866999999999999999999999998749903779989999---99998539997887


No 32 
>PRK08835 consensus
Probab=61.19  E-value=10  Score=18.69  Aligned_cols=55  Identities=5%  Similarity=0.049  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             9999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      -++..+.+--..+.++|...+++|..+--+=-.+|||..|..+   -|+.|+|-+.+-
T Consensus       549 vD~~~L~~ls~el~~~l~~le~~I~~~aG~eFNinSPKQL~~v---LF~~l~Lp~~kK  603 (931)
T PRK08835        549 IDDMLLSAQSQEIAARLDELEQKAYEIAGQEFNMNSPKQLQTI---LFEKMGLPVIKK  603 (931)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCCCCCC
T ss_conf             7899999999999999999999998762785677999999999---998609987885


No 33 
>PRK07997 consensus
Probab=59.23  E-value=8.1  Score=19.31  Aligned_cols=56  Identities=4%  Similarity=0.008  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHHH
Q ss_conf             99999999999999999999999999999997189799999999877641854058888
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPIN   84 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~q   84 (125)
                      ++..+.+--..+.+++...++.|..+--+=--+|||..|.++   -|++|+|-|.+-..
T Consensus       548 D~~~L~~ls~el~~~l~~le~~I~~~aG~eFNinSpKQLgeI---LFekLgLp~~KKTk  603 (928)
T PRK07997        548 DPAVLHAHSEELTLRLAELEKKAHEIAGEPFNLSSTKQLQTI---LFEKQGIKPLKKTP  603 (928)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCCCCCCCC
T ss_conf             899999999999999999999999862998887899999999---89862999888588


No 34 
>PRK06887 consensus
Probab=57.40  E-value=12  Score=18.23  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      ++..+.+--..+..++...++.|..+-.+---+|||..|..+-   |++|+|-+.+-
T Consensus       575 D~~~L~~ls~el~~~l~~le~~iy~~aG~eFNinSpKQL~eiL---FekLgLp~~KK  628 (954)
T PRK06887        575 DSDALLAQSNEIAQRLTALEQQAYELAGQPFNLASTKQLQEIL---FDKLGLPVLKK  628 (954)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCCCC
T ss_conf             7999999999999999999999988609954899989999998---98429998885


No 35 
>PRK08076 consensus
Probab=55.89  E-value=11  Score=18.40  Aligned_cols=56  Identities=16%  Similarity=0.140  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             99999999999999999999999999999999971897999999998776418540588
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      +-++..+.+--..+.++|...+++|..+--+=--+|||..|   ++-.|++|+|-+.+-
T Consensus       495 ~VD~~~L~~ls~~l~~~l~~le~~I~~laG~eFNinSpKQL---~~ILFekL~Lp~~KK  550 (877)
T PRK08076        495 KVDTERLENMGEELAGRLKELEQEIHELAGEEFNINSPKQL---GVILFEKLGLPVIKK  550 (877)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHHCCCCCCCC
T ss_conf             89899999999999999999999999972898788999999---999998538988887


No 36 
>pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=55.33  E-value=17  Score=17.31  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITS   43 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~   43 (125)
                      .|.+.+.+.+++.++++++..
T Consensus        58 ~r~~~r~l~k~lk~l~~e~~~   78 (80)
T pfam06305        58 LRRRLRRLKKQLKKLEKELEQ   78 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999884


No 37 
>PRK07300 consensus
Probab=55.22  E-value=14  Score=17.93  Aligned_cols=51  Identities=20%  Similarity=0.066  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999999999718979999999987764185
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQL   77 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L   77 (125)
                      +-++..+..--..++++|...+++|..+--+=--+|||..|..+   -|++|+|
T Consensus       496 ~VD~~~L~~ls~el~~~l~~Le~~Iy~lAG~eFNInSPKQLgeI---LFekLgL  546 (880)
T PRK07300        496 KVNRETLQEMAAENEVVIEALTQEIYDLAGQEFNINSPKQLGVI---LFEKMGL  546 (880)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCC
T ss_conf             88899999999999999999999999865876577999999999---9984499


No 38 
>PRK07556 consensus
Probab=52.59  E-value=15  Score=17.75  Aligned_cols=55  Identities=11%  Similarity=0.040  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             9999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      ++..+.+--..+..++...+++|..+--+=--+|||..|..   .-|++|+|.+.+-.
T Consensus       592 D~~~L~~l~~~l~~~l~~le~~I~~~aG~eFNi~SpkQL~~---iLF~~l~lp~~kkt  646 (977)
T PRK07556        592 DRQVLSRLSGEFAQKAARLEAEIYELAGEPFNIGSPKQLGD---ILFGKMGLPGGSKT  646 (977)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCCCCC
T ss_conf             69999999999999999999999987089878788999999---99986089888868


No 39 
>pfam11336 DUF3138 Protein of unknown function (DUF3138). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=50.42  E-value=18  Score=17.24  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999997189
Q gi|254781104|r   27 TEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        27 t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      ......+|..|+.++..++...+.|+++.+--..
T Consensus        20 a~s~a~~ikalqaq~~~lq~q~~~l~a~laak~~   53 (514)
T pfam11336        20 AASDASQIKALQAQLTALQQQVNELRAALAAKPA   53 (514)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             2589999999999999999999999998614876


No 40 
>PRK05797 consensus
Probab=49.53  E-value=17  Score=17.31  Aligned_cols=57  Identities=16%  Similarity=0.161  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHH
Q ss_conf             999999999999999999999999999999999718979999999987764185405888
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPI   83 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~   83 (125)
                      +-++..+.+--..+.+++...+++|..+--+=--+|||..|.   +--|++|+|.+.+-.
T Consensus       488 ~VD~~~L~~l~~~l~~~l~~le~~I~~~aG~eFNinSPKQL~---~iLFe~LgLp~~KKt  544 (869)
T PRK05797        488 KVDKDILDELSKKFKEEIEKTQKEIYELAGEEFNINSPKQLG---KILFEKLDLPVIKKT  544 (869)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHHHCCCCCCCCC
T ss_conf             999999999999999999999999998628866789989999---998986499988878


No 41 
>PRK07456 consensus
Probab=49.15  E-value=22  Score=16.71  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECC
Q ss_conf             99999999999999999999999999999999997189799999999877641854058
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATN   81 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~   81 (125)
                      |+-++..+..--..+.++|...++.|..+--+=--+|||..|..   --|++|+|.+..
T Consensus       575 I~vD~~~L~~l~~~l~~~l~~le~~i~~~aG~eFNinSpkQL~e---vLFekL~L~~~k  630 (975)
T PRK07456        575 IRIDIPYLKELSQELESTLERLEQQAYELAGEDFNLSSPKQLGE---LLFEKLGLDRKK  630 (975)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCCC
T ss_conf             50169999999999999999999999986489889899899999---989863999877


No 42 
>pfam11382 DUF3186 Protein of unknown function (DUF3186). This bacterial family of proteins has no known function.
Probab=48.88  E-value=22  Score=16.68  Aligned_cols=36  Identities=11%  Similarity=0.028  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      ..-...++.+...|+.+....+.+...++++....+
T Consensus        31 ~~l~~~l~~~~~~Lr~e~~~l~~~~~~l~~~~~~~d   66 (307)
T pfam11382        31 ENLLSGLEDEFSDLRTENDRLRAEREALNEQASAAD   66 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             567878888999999999999999999999999999


No 43 
>PRK07898 consensus
Probab=47.34  E-value=23  Score=16.54  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECC
Q ss_conf             999999999999999999999999999999997189799999999877641854058
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATN   81 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~   81 (125)
                      -++..+.+--..+.++|...++.|..+--+=--+|||..|..+   -|++|+|-+.+
T Consensus       520 vD~~~L~~ls~el~~~l~~le~~I~~~aG~eFNinSpKQL~ei---LFdkL~Lp~~K  573 (902)
T PRK07898        520 VDLAHLTELQSQFAGQVRDAAEAAYAVIGKQINLGSPKQLQVV---LFDELGMPKTK  573 (902)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH---HHHHCCCCCCC
T ss_conf             8199999899999999999999999981895689998999999---89970999888


No 44 
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.88  E-value=10  Score=18.73  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHCCEECCHHHCCCHHH
Q ss_conf             99997189799999999877641854058888322888
Q gi|254781104|r   53 AQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDD   90 (125)
Q Consensus        53 AEwayL~~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~   90 (125)
                      .-|+||..| |+..||..|.-.+.+.|+...-+....-
T Consensus        18 SP~ayL~~~-~~~~laq~~ga~v~~rP~llg~vfk~tG   54 (203)
T COG3917          18 SPYAYLAWP-RLPALAQAYGAAVALRPILLGGVFKATG   54 (203)
T ss_pred             CCHHHHHHH-HHHHHHHHCCCCEEEEEEEECEEEEECC
T ss_conf             815876024-4599999809852787530020586237


No 45 
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=45.38  E-value=25  Score=16.35  Aligned_cols=48  Identities=17%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             118999999999999999999999999999999999999999999999
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYID   49 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~   49 (125)
                      +..-+++.+++++.+.|..-.+-.-.+.+-+-++..+.++++.+++.+
T Consensus         4 l~~w~~~ii~~vv~llFG~kkLp~~arslG~s~r~fK~~~~e~~~e~~   51 (88)
T PRK00575          4 LSPWHWAILAVVVIVLFGAKKLPDAARSLGKSMRIFKSEVREMQNENK   51 (88)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             517999999999999967540168999999999999999987551000


No 46 
>pfam06667 PspB Phage shock protein B. This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one.
Probab=44.93  E-value=25  Score=16.31  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999-----999999999999999999999999
Q gi|254781104|r   16 SITITYSIKHETEG-----KKEKLRILENKITSEQNYIDLLKA   53 (125)
Q Consensus        16 l~~~~y~iK~~t~~-----~~~ei~~L~~~I~~~~~~i~~LkA   53 (125)
                      =.+.+|.-|.++..     -.+.+..|-..-...+++|..|+.
T Consensus        21 WL~LHYrsk~k~~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~   63 (75)
T pfam06667        21 WLILHYRSKWKVSQGLSEEDEQLLEELLETAEKLQERIQTLER   63 (75)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999656023467789999999999999999999999999999


No 47 
>pfam10805 DUF2730 Protein of unknown function (DUF2730). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.84  E-value=27  Score=16.11  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             999999999999999999-9999999999999999999999999997189799999999
Q gi|254781104|r   12 VVLASITITYSIKHETEG-KKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVS   69 (125)
Q Consensus        12 ~~i~l~~~~y~iK~~t~~-~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~   69 (125)
                      .++++++.++..+.+.+. .-.++..+...+....+++..++.+..+|-+-+-+.+|--
T Consensus        14 ~~~~~~~~~~~~~l~ktyakkedv~~l~~~~~~~~~Rl~~lE~~v~~lPt~~dv~~L~~   72 (106)
T pfam10805        14 AVLSIAGGAFWALLSKTYAKREDVEKLIDIIASNDKRLTEMETKLESLPTAKDVHALKI   72 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999999843213988999999988777689999999853996878999999


No 48 
>pfam07665 consensus
Probab=42.66  E-value=27  Score=16.09  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999999999997189
Q gi|254781104|r   21 YSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        21 y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      -..|..+..+...+..+...|...++..++|+++-|-+-+
T Consensus         8 ~~lk~Dv~~LK~Dmv~vK~Di~~LK~dV~~Lk~Dvs~iK~   47 (57)
T pfam07665         8 KQLKTDVAVLKTDMVEVKSDIKILKEDVAVLKKDVSKIKK   47 (57)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999889999999999999999999999999998999860


No 49 
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=42.34  E-value=28  Score=16.06  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHH
Q ss_conf             9118999999999999999999999999999999999999999999999999999971897--99999999
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP--DRIKDLVS   69 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P--~RL~~La~   69 (125)
                      |++.+-.+++++..++.-+.|.-++  +..-++++       ..+.-+..|++|-+|=..|  +=+.+++.
T Consensus         1 MlKliGa~LIi~s~~~~G~~~a~~~--~~R~~qL~-------~l~~~l~~L~~EI~Y~~tpL~eal~~i~~   62 (172)
T PRK08307          1 MMKLLGAVLIVAASTWIGFLYAERY--KERPRQLR-------ELKAALQSLEAEIMYGHTPLPEALENIAK   62 (172)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-------HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9189999999999889999999999--99999999-------99999999999998808989999999987


No 50 
>pfam08172 CASP_C CASP C terminal. This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport.
Probab=41.14  E-value=29  Score=15.95  Aligned_cols=45  Identities=29%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999999999999999999999999997189799999999
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVS   69 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~   69 (125)
                      -|-....+|+++++++..+...+.++.-|++|-.-|=  ++++=|..
T Consensus        91 Fr~Rn~ELE~elr~~~~~~~~l~~ev~~L~~DN~kLY--EK~Rylqs  135 (245)
T pfam08172        91 FRKRNTELEEELRKLNQTISSLRQELASLKADNIKLY--EKIRYLQS  135 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_conf             9999999999999999999999999999998889999--99998860


No 51 
>pfam07047 OPA3 Optic atrophy 3 protein (OPA3). This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity.
Probab=40.96  E-value=29  Score=15.93  Aligned_cols=44  Identities=11%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999
Q gi|254781104|r   10 LGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQW   55 (125)
Q Consensus        10 ~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEw   55 (125)
                      |.+.+++.+|=|  .-..+...++-..++.++...++++..|+.+-
T Consensus        85 F~Va~~li~~E~--~Rs~~ke~~Kee~~~~~l~~L~~~i~~L~~~~  128 (134)
T pfam07047        85 FSVAGGLLVYEY--QRSSRKEAKKEEELQQELEELEQRVEELELEV  128 (134)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999--99842476589999999999999999999999


No 52 
>pfam01166 TSC22 TSC-22/dip/bun family.
Probab=40.71  E-value=29  Score=15.91  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHH
Q ss_conf             999999999999999999999999999971---89799999999
Q gi|254781104|r   29 GKKEKLRILENKITSEQNYIDLLKAQWALL---IQPDRIKDLVS   69 (125)
Q Consensus        29 ~~~~ei~~L~~~I~~~~~~i~~LkAEwayL---~~P~RL~~La~   69 (125)
                      ..-+++.-|...|....++++.|+.|-++|   -+|+-|..+..
T Consensus        11 AVREEVevLk~~I~eL~~~~~~le~EN~~Lk~~~spe~l~ql~~   54 (57)
T pfam01166        11 AVREEVEVLKEQIKELEEKNSQLERENTLLKSLASPEQLEQLQS   54 (57)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999999999999999999999999986099999999976


No 53 
>KOG0842 consensus
Probab=38.89  E-value=31  Score=15.74  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECC
Q ss_conf             99999999999999999997189799999999877641854058
Q gi|254781104|r   38 ENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATN   81 (125)
Q Consensus        38 ~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~   81 (125)
                      +.+.-+++.+++.-|    ||+-||| +.||..    |+|.|+.
T Consensus       162 qAQV~ELERRFrqQR----YLSAPER-E~LA~~----LrLT~TQ  196 (307)
T KOG0842         162 QAQVYELERRFRQQR----YLSAPER-EHLASS----LRLTPTQ  196 (307)
T ss_pred             HHHHHHHHHHHHHHH----CCCCHHH-HHHHHH----CCCCCHH
T ss_conf             668999999987510----3561739-999986----1787201


No 54 
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=37.72  E-value=33  Score=15.62  Aligned_cols=43  Identities=0%  Similarity=-0.065  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254781104|r    7 FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYID   49 (125)
Q Consensus         7 ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~   49 (125)
                      .++|++|+++.+|...-+.=+..++++...++.+|...+..-.
T Consensus        33 ~IsFvif~~iL~~~~vp~~I~~~LD~R~~~I~~dLdeAe~lre   75 (184)
T PRK13455         33 TLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALRE   75 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999955899999999999999999999999999


No 55 
>smart00338 BRLZ basic region leucin zipper.
Probab=36.72  E-value=34  Score=15.53  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999999997189
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      -|-....++.++..|+.+....+..+..|+.|...|..
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~e~~~Lk~   61 (65)
T smart00338       24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999


No 56 
>pfam05680 ATP-synt_E ATP synthase E chain. This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit.
Probab=36.52  E-value=34  Score=15.51  Aligned_cols=53  Identities=17%  Similarity=0.117  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHH
Q ss_conf             99999999999999999999999999999999999999999999997189799-99999
Q gi|254781104|r   11 GVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDR-IKDLV   68 (125)
Q Consensus        11 ~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~R-L~~La   68 (125)
                      ++++|+.++.|.-.+-     .+.....+++...+.-|...|+||+-...|.- ...|+
T Consensus        17 aL~~Gi~yGa~h~~~L-----~k~~~~~re~e~keklI~~AK~e~aKk~~~~~e~~~l~   70 (81)
T pfam05680        17 ALVAGVVYGAKHQRSL-----KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKALA   70 (81)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999989999888-----88999999999999999999999987537754555663


No 57 
>KOG4797 consensus
Probab=36.49  E-value=34  Score=15.50  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHH
Q ss_conf             99999999999999999999999999971---897999999998
Q gi|254781104|r   30 KKEKLRILENKITSEQNYIDLLKAQWALL---IQPDRIKDLVSL   70 (125)
Q Consensus        30 ~~~ei~~L~~~I~~~~~~i~~LkAEwayL---~~P~RL~~La~~   70 (125)
                      .-.|+..|..+|.+..++.+.|+.|-+.|   .+|+.|..|-..
T Consensus        65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~  108 (123)
T KOG4797          65 VREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQ  108 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99999999999999999999999987899850899999998873


No 58 
>pfam07219 HemY_N HemY protein N-terminus. This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Probab=35.69  E-value=33  Score=15.60  Aligned_cols=14  Identities=7%  Similarity=-0.137  Sum_probs=5.4

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             97999999998776
Q gi|254781104|r   60 QPDRIKDLVSLYQK   73 (125)
Q Consensus        60 ~P~RL~~La~~y~~   73 (125)
                      +.++=++++.+-.+
T Consensus       100 d~~~A~k~~~ka~k  113 (134)
T pfam07219       100 DWALAERLARKAAE  113 (134)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999876


No 59 
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.80  E-value=36  Score=15.34  Aligned_cols=36  Identities=11%  Similarity=-0.103  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             999999999999999999999999999997189799
Q gi|254781104|r   28 EGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDR   63 (125)
Q Consensus        28 ~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~R   63 (125)
                      -.-.++|..++.++...+.+...|++|-.-.+.|.|
T Consensus        61 l~gik~iL~l~~q~~~l~~~~~~l~~el~~~~~~~~   96 (98)
T cd01279          61 LAGIKRIIELYPQVLLLQCRSCEHATELIGCAKPCR   96 (98)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999899999999999999999998766650


No 60 
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=32.44  E-value=40  Score=15.10  Aligned_cols=36  Identities=6%  Similarity=0.122  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999
Q gi|254781104|r    8 IILGVVLASITITYSIKHETEGKKEKLRILENKITS   43 (125)
Q Consensus         8 i~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~   43 (125)
                      +.++.+.++-+.+|.+--...+.+++|..|.++|+-
T Consensus        76 L~vitI~~ayyLlfrlYl~IdkiereITelvreIAi  111 (121)
T COG2456          76 LFVITIGLAYYLLFRLYLDIDKIEREITELVREIAI  111 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             467999999999999999987899999999999988


No 61 
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.24  E-value=40  Score=15.08  Aligned_cols=19  Identities=16%  Similarity=0.099  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254781104|r    5 LDFIILGVVLASITITYSI   23 (125)
Q Consensus         5 ~~ii~~~~~i~l~~~~y~i   23 (125)
                      |.++..+++.++|+|-|.-
T Consensus        27 ~~lL~~~~V~~lGy~f~~s   45 (211)
T COG3167          27 FCLLAVAAVLGLGYAFYLS   45 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999854


No 62 
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family; InterPro: IPR006312   This family represents TatA and TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by IPR006311 from INTERPRO. ; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=32.23  E-value=40  Score=15.08  Aligned_cols=46  Identities=7%  Similarity=0.143  Sum_probs=39.4

Q ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             91-18999999999999999999999999999999999999999999
Q gi|254781104|r    1 MF-KTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQN   46 (125)
Q Consensus         1 M~-r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~   46 (125)
                      ++ ...+.+.+++++.+.|.+-.+..-.+++-+=|+.-++..+++++
T Consensus         1 ~~~s~~~~liiL~v~~LlFG~kKLp~~grdlG~aik~FKka~~~~~~   47 (48)
T TIGR01411         1 GLTSPWHLLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEDED   47 (48)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98779999999999886417753478999998988998863202246


No 63 
>pfam07106 TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP). This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation.
Probab=31.03  E-value=42  Score=14.96  Aligned_cols=38  Identities=11%  Similarity=0.043  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             99999999999999999999999999999999718979
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPD   62 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~   62 (125)
                      -+...++.+|..|+.++...+..++.|++|.+-|++--
T Consensus        72 eel~~~d~~i~~L~~~l~~l~~~~~~l~~el~~L~s~~  109 (169)
T pfam07106        72 EELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDL  109 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89987699999999999999999999999999987589


No 64 
>KOG0488 consensus
Probab=29.64  E-value=44  Score=14.81  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCHHHCCCH
Q ss_conf             9999999999999999971897999999998776418540588883228
Q gi|254781104|r   40 KITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITY   88 (125)
Q Consensus        40 ~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p~qi~~~   88 (125)
                      ++..++.++...|    ||+.||| .+||..    |+|.-   .|+.++
T Consensus       183 Ql~~LEkrF~~QK----YLS~~DR-~~LA~~----LgLTd---aQVKtW  219 (309)
T KOG0488         183 QLFELEKRFEKQK----YLSVADR-IELAAS----LGLTD---AQVKTW  219 (309)
T ss_pred             HHHHHHHHHHHHH----CCCHHHH-HHHHHH----CCCCH---HHHHHH
T ss_conf             9999999887750----2567889-999998----29925---568887


No 65 
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=29.42  E-value=45  Score=14.79  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999--71897999999998776
Q gi|254781104|r    7 FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWA--LLIQPDRIKDLVSLYQK   73 (125)
Q Consensus         7 ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwa--yL~~P~RL~~La~~y~~   73 (125)
                      ++++++-+++|+++.+.   +....++..+|++++...+.++...+.|.+  +-.+-+=+..|++-|.+
T Consensus         3 li~lvvG~iiG~~~~R~---~~~~~~~q~~Le~eLe~~k~el~~Y~~ev~~HF~~tA~Ll~~l~~~Y~~   68 (128)
T pfam06295         3 IIGLIVGLIIGLIIMRL---TNPTYKNQKKIKKELEEAKEELDEQRQELKDHFAQSAELLETLGKDYHK   68 (128)
T ss_pred             HHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999997---2740768999999999999999999999999999999999999999999


No 66 
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=28.37  E-value=47  Score=14.68  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999971
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALL   58 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL   58 (125)
                      -+.+...++...+++.+..++..+.-.-.+||.=
T Consensus        42 ~d~~~~~~~~~~Ve~~l~~e~~~i~~~~~d~a~W   75 (295)
T COG3322          42 LDEQALLENVELVENALDSEQKSIDRFVSDWAFW   75 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6799999889999999999999998663014468


No 67 
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940    This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=28.09  E-value=31  Score=15.78  Aligned_cols=12  Identities=42%  Similarity=0.872  Sum_probs=9.9

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             979999999987
Q gi|254781104|r   60 QPDRIKDLVSLY   71 (125)
Q Consensus        60 ~P~RL~~La~~y   71 (125)
                      ||+|+..+|++|
T Consensus       143 RPdri~~IAerf  154 (314)
T TIGR02238       143 RPDRIKAIAERF  154 (314)
T ss_pred             CHHHHHHHHHHC
T ss_conf             817899887540


No 68 
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.75  E-value=48  Score=14.61  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999-----9999999999999999999999999
Q gi|254781104|r   15 ASITITYSIKHETE-----GKKEKLRILENKITSEQNYIDLLKA   53 (125)
Q Consensus        15 ~l~~~~y~iK~~t~-----~~~~ei~~L~~~I~~~~~~i~~LkA   53 (125)
                      .=.+.+|.-|.++.     .-.+.+..|-..-...+++|..|++
T Consensus        20 iWLiLHY~sk~k~~~~Ls~~d~~~L~~L~~~A~~m~eRI~tLE~   63 (75)
T PRK09458         20 IWLWLHYRSKRQVSQGLSQEEQQRLAQLTEKAEKMRERIQTLEA   63 (75)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999866240246799999999999999999999999999999


No 69 
>CHL00167 consensus
Probab=27.35  E-value=49  Score=14.57  Aligned_cols=53  Identities=13%  Similarity=0.092  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999997
Q gi|254781104|r    5 LDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWAL   57 (125)
Q Consensus         5 ~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEway   57 (125)
                      ..++.+++.++-.+........-......|..-+.......+.+...+++|+-
T Consensus        37 ~ivigiL~~fg~~~L~~~L~~Rke~I~~~I~eAE~r~~eA~~~L~eak~~L~q   89 (182)
T CHL00167         37 LILLSGLIYLGKNFLGSSLEERQQKVLEAIQESEERLEQANSRLSESEKQLAQ   89 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999984676898999999999999999999999999999999999999


No 70 
>pfam05545 FixQ Cbb3-type cytochrome oxidase component FixQ. This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.
Probab=27.07  E-value=47  Score=14.65  Aligned_cols=23  Identities=9%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999
Q gi|254781104|r    4 TLDFIILGVVLASITITYSIKHE   26 (125)
Q Consensus         4 ~~~ii~~~~~i~l~~~~y~iK~~   26 (125)
                      ...++.++++++..+|+|.-+++
T Consensus        13 ~~~l~~~~~Figiv~wa~~p~~k   35 (49)
T pfam05545        13 WGTLVLFVFFIGIVFWAYSPRRK   35 (49)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999999987287750


No 71 
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=26.78  E-value=50  Score=14.50  Aligned_cols=34  Identities=12%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999997189
Q gi|254781104|r   27 TEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        27 t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      |...-++|..|+++|.+.+..+-.=.+||..++.
T Consensus         2 T~qQk~ei~~l~kqi~el~Kqii~KyVe~G~iT~   35 (59)
T pfam10925         2 TDQQKKEIEALYKQIAELRKQVIDKYVEAGVITK   35 (59)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             6888999999999999999999999998275649


No 72 
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.31  E-value=51  Score=14.45  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999997
Q gi|254781104|r   33 KLRILENKITSEQNYIDLLKAQWAL   57 (125)
Q Consensus        33 ei~~L~~~I~~~~~~i~~LkAEway   57 (125)
                      -+..|+..|...++.|.-|+||.+-
T Consensus        26 sV~El~eRIalLq~EIeRlkAe~~k   50 (65)
T COG5509          26 SVAELEERIALLQAEIERLKAELAK   50 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1888999999999999999999986


No 73 
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.52  E-value=53  Score=14.36  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9118999999999999999999
Q gi|254781104|r    1 MFKTLDFIILGVVLASITITYS   22 (125)
Q Consensus         1 M~r~~~ii~~~~~i~l~~~~y~   22 (125)
                      |||.+.++++++++++++-+..
T Consensus         1 ~mRvl~i~Lliis~fl~a~~s~   22 (182)
T COG2143           1 VMRVLLIVLLIISLFLSACKSN   22 (182)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCC
T ss_conf             9001999999999999997178


No 74 
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=23.50  E-value=58  Score=14.13  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             18999999999999999999999999999999999999999999
Q gi|254781104|r    3 KTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQN   46 (125)
Q Consensus         3 r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~   46 (125)
                      ...+.+.+++++.+.|.+-.+++--..+-+-|...++..+.+.+
T Consensus         5 s~~hwlivl~iv~llFGtkkl~~lg~dlG~~iK~Fkk~m~d~~~   48 (90)
T PRK00442          5 DWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNEEED   48 (90)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             69999999999999946403546788899999999987333345


No 75 
>pfam06720 Phi-29_GP16_7 Bacteriophage phi-29 early protein GP16.7. This family consists of several bacteriophage phi-29 early protein GP16.7 sequences of around 130 residues in length. The function of this family is unknown.
Probab=23.40  E-value=58  Score=14.12  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWA   56 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwa   56 (125)
                      -+.+.+..+.++..|++.|+..+.-++.+.---+
T Consensus        25 ~~~e~~e~~~~~e~l~~~i~q~~qil~e~ne~i~   58 (130)
T pfam06720        25 KIQEARELEDYLEDLNKRIAQRTQILSELNEVIS   58 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1788988899999999999999999999999870


No 76 
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit; InterPro: IPR005741   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .   This entry represents subunit A (parC) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II.   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=23.05  E-value=59  Score=14.07  Aligned_cols=68  Identities=31%  Similarity=0.392  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCEECCHHHCCCHHHC
Q ss_conf             99999999999999999999999999999999999997189---7999999998776418540588883228885
Q gi|254781104|r   20 TYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ---PDRIKDLVSLYQKELQLQATNPINLITYDDL   91 (125)
Q Consensus        20 ~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~---P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l   91 (125)
                      .+..|.|...+.+++..|+.-|++++.+.++|+-+.--+--   -.|...|-+    .+.=.-+.-++++.-+++
T Consensus       429 i~~L~~E~~eL~~~~~~l~~~i~~~k~~~~~lk~~l~~~KK~F~~~R~s~l~~----~~~~~~i~~~~li~~~~~  499 (745)
T TIGR01061       429 IFELKEEEEELEKKIKSLEEIIASEKARKKLLKKKLKELKKKFAQERRSKLED----EIEKIKINEDELIEKEDL  499 (745)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHEECCHHHHHHHCCC
T ss_conf             77778789999999999999876578999998999998723105750456751----165301046785321464


No 77 
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.01  E-value=59  Score=14.07  Aligned_cols=49  Identities=12%  Similarity=0.122  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999997189799999999
Q gi|254781104|r   19 ITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVS   69 (125)
Q Consensus        19 ~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~   69 (125)
                      ..|..--.+-..|+-|.+...+|++++.+|+.|+++-  =.++.=|..+.+
T Consensus        42 a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~--~~sgsFLs~~f~   90 (233)
T COG3416          42 AAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE--AGSGSFLSNAFK   90 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHCC
T ss_conf             4899999999999999999999999999999984146--788613321103


No 78 
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=22.76  E-value=60  Score=14.04  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999718979999999
Q gi|254781104|r   22 SIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLV   68 (125)
Q Consensus        22 ~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La   68 (125)
                      ..+...+.++.+...|+++=...+.+...|+.|...|.+|=-+...+
T Consensus         3 ~l~~~ir~Le~~~~~le~e~~~l~~E~~~lr~E~~rlr~PP~~~~~V   49 (364)
T TIGR01242         3 ELKERIRKLEDEKKLLEKEKIRLERELERLRSEIERLRSPPLIVGTV   49 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             27899998888888788777789999999999999845898278875


No 79 
>pfam03978 Borrelia_REV Borrelia burgdorferi REV protein. This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete). The function of REV is unknown although it known that gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli.
Probab=21.52  E-value=63  Score=13.88  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHH
Q ss_conf             9999999999999999999-99999999999999999999-----9999999999999718979---9999999877641
Q gi|254781104|r    5 LDFIILGVVLASITITYSI-KHETEGKKEKLRILENKITS-----EQNYIDLLKAQWALLIQPD---RIKDLVSLYQKEL   75 (125)
Q Consensus         5 ~~ii~~~~~i~l~~~~y~i-K~~t~~~~~ei~~L~~~I~~-----~~~~i~~LkAEwayL~~P~---RL~~La~~y~~~L   75 (125)
                      +.++.+.+++.+++-+|.+ |-+...+...+..|+.....     -++.|..|+-..-|-..-+   .+-.|-..|++.|
T Consensus         7 ~kLfF~smlfvmaCk~yv~ek~~Idsl~~~Vs~Lnn~~d~~~fknyk~kin~LKe~lKdv~NAEl~EK~L~Lq~lFQdKL   86 (160)
T pfam03978         7 VKLFFVSMLFVMACKAYVEEKKEIDSLLEGVSKLNNKSDETKFKNYKEKINELKEDLKDVGNAELEEKLLNLQSLFQDKL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999888615733288998799999999999887331899999999999999999


No 80 
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=21.31  E-value=64  Score=13.86  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254781104|r    7 FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYID   49 (125)
Q Consensus         7 ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~   49 (125)
                      +++|++|+++..|...=+.-+..++++-..++.+|...+..-.
T Consensus         8 ~I~fvi~~~ll~~~~~p~~i~~~Ld~R~~~I~~~l~~Ae~~~~   50 (159)
T PRK09173          8 FVGLVLFLALVVYLKVPGMIGRSLDERADRIKNELDEARRLRE   50 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999977899999999999999999999998899


No 81 
>pfam11488 Lge1 Transcriptional regulatory protein LGE1. This family of proteins is conserved in yeasts where it is involved in the ubiquitination of histones H2A and H2B. This ubiquitination step is a vital one in the regulation of the transcriptional activity of RNA polymerase II. In S. cerevisiae, Rad6 and Bre1 are present in a complex, also containing Lge1, that is required for H2B ubiquitination. Bre1 is the H2B ubiquitin ligase that interacts with acidic activators, such as Gal4, and recruits Rad6 and its binding partner Lge1 to target promoters. In S. pombe the equivalent protein to Lge1 appears to be Shf1.
Probab=21.11  E-value=64  Score=13.83  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999997189
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      +.+..-++...+..+|...+..+..|+.||+.|..
T Consensus       178 ~le~~~~e~~~~d~~L~~~~~~~~k~e~~~~~le~  212 (234)
T pfam11488       178 KLEERYKELEELDQKLEELQLKKLKLELELALLET  212 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998766888899999999999999999999988


No 82 
>pfam09889 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=20.98  E-value=65  Score=13.82  Aligned_cols=21  Identities=10%  Similarity=-0.070  Sum_probs=10.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             118999999999999999999
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYS   22 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~   22 (125)
                      +|.-.++..++++++++|+|.
T Consensus        36 ~~~q~i~f~i~il~i~v~~~~   56 (59)
T pfam09889        36 RKSQQILFGIFILFLAVYAVL   56 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998


No 83 
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=20.38  E-value=67  Score=13.74  Aligned_cols=44  Identities=7%  Similarity=0.200  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11899999999999999999999999999999999999999999
Q gi|254781104|r    2 FKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQ   45 (125)
Q Consensus         2 ~r~~~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~   45 (125)
                      |.+-+.+.+++++.+.|.+-.+++--.++-+-|...++.+.++.
T Consensus         4 ~Siwh~lIv~~ivvllFGtkkL~~lg~DlG~aik~FKk~m~ddd   47 (75)
T PRK04561          4 FSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDDD   47 (75)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             53899999999999983653031478889999999998734345


No 84 
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=20.07  E-value=50  Score=14.51  Aligned_cols=20  Identities=20%  Similarity=0.321  Sum_probs=16.6

Q ss_pred             HCCHHHHHHHHHHHHHHHCC
Q ss_conf             18979999999987764185
Q gi|254781104|r   58 LIQPDRIKDLVSLYQKELQL   77 (125)
Q Consensus        58 L~~P~RL~~La~~y~~~L~L   77 (125)
                      -++|+++-..+..||++|.-
T Consensus        16 ~~~P~d~~~F~~~yF~kL~~   35 (38)
T smart00394       16 RAQPSDLVQFAADYFEKLEE   35 (38)
T ss_pred             HHCCCCHHHHHHHHHHHHHH
T ss_conf             83987399999999999877


Done!