Query gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 125 No_of_seqs 143 out of 371 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 21:43:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781104.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1es6_A Matrix protein VP40; b 52.5 9 0.00027 18.6 2.2 29 56-85 3-31 (70) 2 >1jnm_A Proto-oncogene C-JUN; 46.5 21 0.00061 16.5 5.8 38 23-60 20-57 (62) 3 >1a02_F FOS, AP-1 fragment FOS 46.4 21 0.00061 16.4 5.4 36 23-58 21-56 (56) 4 >1dip_A Delta-sleep-inducing p 46.2 15 0.00044 17.3 2.5 28 32-59 14-41 (77) 5 >2c6n_A Angiotensin-converting 44.9 21 0.00063 16.4 3.1 29 60-89 26-54 (150) 6 >2qiz_A Ubiquitin conjugation 43.6 21 0.00063 16.4 3.0 48 6-57 215-262 (296) 7 >1j36_A ANCE, angiotensin conv 41.5 25 0.00073 16.0 3.0 34 60-94 25-58 (278) 8 >1hjb_A Ccaat/enhancer binding 41.3 25 0.00073 16.0 5.9 36 24-59 35-70 (87) 9 >2w6a_A ARF GTPase-activating 39.9 26 0.00077 15.8 4.9 36 26-61 28-63 (63) 10 >1m1j_A Fibrinogen alpha subun 39.4 27 0.00079 15.8 5.7 29 28-56 3-31 (373) 11 >1bgx_T TAQ DNA polymerase; DN 38.5 8.3 0.00024 18.9 0.2 50 30-82 5-54 (99) 12 >1u0i_A IAAL-E3; coiled-coil, 35.3 31 0.00091 15.4 2.7 18 29-46 4-21 (26) 13 >1jcd_A Major outer membrane l 34.3 32 0.00095 15.3 6.0 39 21-59 7-45 (52) 14 >1t2k_D Cyclic-AMP-dependent t 33.2 33 0.00099 15.2 5.9 36 24-59 21-56 (61) 15 >1fos_E P55-C-FOS proto-oncoge 28.6 40 0.0012 14.7 5.9 36 24-59 21-56 (62) 16 >1r42_A Angiotensin I converti 25.7 45 0.0013 14.4 2.4 32 60-92 25-56 (237) 17 >1gu4_A CAAT/enhancer binding 24.9 47 0.0014 14.3 5.9 36 24-59 35-70 (78) 18 >1ci6_A Transcription factor A 24.8 47 0.0014 14.3 5.9 36 24-59 22-57 (63) 19 >2hhv_A DNA polymerase I; DNA 24.5 47 0.0014 14.3 4.3 49 29-80 8-56 (112) 20 >1dh3_A Transcription factor C 20.9 56 0.0017 13.8 4.3 31 24-54 21-51 (55) No 1 >>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:197-266) Probab=52.49 E-value=9 Score=18.64 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=24.2 Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEECCHHHC Q ss_conf 971897999999998776418540588883 Q gi|254781104|r 56 ALLIQPDRIKDLVSLYQKELQLQATNPINL 85 (125) Q Consensus 56 ayL~~P~RL~~La~~y~~~L~L~Pi~p~qi 85 (125) +-|++|+.++.+.+... .++..|+.|..- T Consensus 3 sdltspdkiq~imn~~q-d~kivpidptkn 31 (70) T 1es6_A 3 ADLTSPEKIQAIMTSLQ-DFKIVPIDPTKN 31 (70) T ss_dssp HHHSCHHHHHHHHHHGG-GCEEEEEEGGGT T ss_pred CCCCCHHHHHHHHHHCC-CCEEEECCCCCC T ss_conf 34678789999997602-450661277555 No 2 >>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} (A:) Probab=46.47 E-value=21 Score=16.46 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999999999997189 Q gi|254781104|r 23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ 60 (125) Q Consensus 23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~ 60 (125) -|.....++.++..|+.+....+..+..|+.|...|.. T Consensus 20 kk~~~~~Le~~v~~L~~e~~~L~~~~~~l~~e~~~lk~ 57 (62) T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999 No 3 >>1a02_F FOS, AP-1 fragment FOS; transcription factor, NFAT, NF-AT, FOS-JUN, quaternary protein-DNA complex, transcription synergy; HET: DNA; 2.70A {Homo sapiens} (F:) Probab=46.38 E-value=21 Score=16.45 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999971 Q gi|254781104|r 23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALL 58 (125) Q Consensus 23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL 58 (125) -|..+..++.++..|+.++...+..+..|+.|-..| T Consensus 21 kk~~~~~Le~~v~~L~~~~~~L~~~~~~l~~e~~~L 56 (56) T 1a02_F 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999998779999999999999999999999998629 No 4 >>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:) Probab=46.22 E-value=15 Score=17.29 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999718 Q gi|254781104|r 32 EKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 32 ~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) +|+.-|+..|.+..++++.|+.|-++|- T Consensus 14 EEVevLke~I~eL~~~~~~Le~EN~~Lk 41 (77) T 1dip_A 14 EEVEILKEQIRELVEKNSQLERENTLLK 41 (77) T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999 No 5 >>2c6n_A Angiotensin-converting enzyme, somatic isoform; hydrolase, angiotensin-I converting enzyme, N domain, zinc metallopeptidase, metalloprotease; HET: NAG NDG LPR; 3.0A {Homo sapiens} PDB: 2c6f_A* (A:264-413) Probab=44.95 E-value=21 Score=16.38 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=23.7 Q ss_pred CHHHHHHHHHHHHHHHCCEECCHHHCCCHH Q ss_conf 979999999987764185405888832288 Q gi|254781104|r 60 QPDRIKDLVSLYQKELQLQATNPINLITYD 89 (125) Q Consensus 60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~ 89 (125) .|.++=+.|+.||..|||.|+.++ |+.-+ T Consensus 26 t~~~mf~~ae~Ff~SlGl~~lp~~-FW~~S 54 (150) T 2c6n_A 26 NATHMFRVAEEFFTSLELSPMPPE-FWEGS 54 (150) T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHH-HHHSC T ss_pred CHHHHHHHHHHHHHHCCCCCCCHH-HHHHH T ss_conf 899999999999997275315589-99887 No 6 >>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:187-482) Probab=43.63 E-value=21 Score=16.36 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999997 Q gi|254781104|r 6 DFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWAL 57 (125) Q Consensus 6 ~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEway 57 (125) ++++=+.++...+. .+.......+..++.++|...+..+..++++|+- T Consensus 215 nFiTecFFLT~~a~----hlg~~~~~~~~~r~~r~l~~lq~~l~~~~~~~~~ 262 (296) T 2qiz_A 215 NFISDCFFLTLTYL----HYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAAN 262 (296) T ss_dssp CHHHHHHHHHHHHH----HHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 96699999999999----9634999999999999999999999998731147 No 7 >>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A {Drosophila melanogaster} (A:258-426,A:484-592) Probab=41.55 E-value=25 Score=15.99 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=26.8 Q ss_pred CHHHHHHHHHHHHHHHCCEECCHHHCCCHHHCCCC Q ss_conf 97999999998776418540588883228885655 Q gi|254781104|r 60 QPDRIKDLVSLYQKELQLQATNPINLITYDDLARL 94 (125) Q Consensus 60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l~~~ 94 (125) .|.++-++|+.||..|||.|+.+ -|+.-+.+..+ T Consensus 25 t~~~mf~~ae~FF~SLGl~~lp~-~FW~~S~~~kP 58 (278) T 1j36_A 25 TPLKMFQMGDDFFTSMNLTKLPQ-DFWDKSIIEKP 58 (278) T ss_dssp CHHHHHHHHHHHHHTTTCCCCCH-HHHHHCBCSCC T ss_pred CHHHHHHHHHHHHHHHCCHHCCH-HHHHHHHHHCC T ss_conf 39999899999999836410306-78744554046 No 8 >>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} (A:) Probab=41.34 E-value=25 Score=15.97 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999718 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) +.....++.++..|+.++..++..+..|+.|-.+|. T Consensus 35 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~l~ 70 (87) T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 875068887899987325899999999999999999 No 9 >>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:) Probab=39.86 E-value=26 Score=15.83 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 999999999999999999999999999999971897 Q gi|254781104|r 26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP 61 (125) Q Consensus 26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P 61 (125) +++.+.+--..+..+++..+..+..|+.|-+-|-+| T Consensus 28 kiQqLmkvN~nls~Elr~lQ~~~~~Lq~ENs~Lr~~ 63 (63) T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQP 63 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999997877599999999999999774530498 No 10 >>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491) Probab=39.36 E-value=27 Score=15.78 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254781104|r 28 EGKKEKLRILENKITSEQNYIDLLKAQWA 56 (125) Q Consensus 28 ~~~~~ei~~L~~~I~~~~~~i~~LkAEwa 56 (125) ..+.+++.++++++..++++++...+|+. T Consensus 3 ~~lk~~~~~~~e~~~~~~~~~~~~~~~~~ 31 (373) T 1m1j_A 3 VTLKQRVATQVNRIKALQNSIQEQVVEMK 31 (373) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999 No 11 >>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} (T:452-550) Probab=38.55 E-value=8.3 Score=18.87 Aligned_cols=50 Identities=18% Similarity=0.048 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH Q ss_conf 99999999999999999999999999971897999999998776418540588 Q gi|254781104|r 30 KKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP 82 (125) Q Consensus 30 ~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p 82 (125) +++....+++++...++++..+--+---++||. .+++.-|++|+|.|... T Consensus 5 l~~~~~~l~~~l~~le~~~~~laG~~fNl~Spk---Ql~~vLf~~L~L~~~~k 54 (99) T 1bgx_T 5 LRALSLEVAEEIARLEAEVFRLAGHPFNLNSRD---QLERVLFDELGLPAIGK 54 (99) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCHH---HHTTTTTTSCCCCCCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCCCC T ss_conf 999999876789999999998613543345177---77787664026743322 No 12 >>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:) Probab=35.29 E-value=31 Score=15.40 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254781104|r 29 GKKEKLRILENKITSEQN 46 (125) Q Consensus 29 ~~~~ei~~L~~~I~~~~~ 46 (125) .++++|..|+++|...+. T Consensus 4 alekeiaalekeiaalek 21 (26) T 1u0i_A 4 ALEKEIAALEKEIAALEK 21 (26) T ss_dssp HHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 899999999999999986 No 13 >>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} (A:) Probab=34.26 E-value=32 Score=15.28 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999999718 Q gi|254781104|r 21 YSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 21 y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) -.+..+++.+..++.+|..+|...+..+.-.|-|++.-| T Consensus 7 ~qlssdvqtln~Kvdqls~Dvna~r~dvqaaK~eAaRaN 45 (52) T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARAN 45 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 898889999999999998889998899999888999998 No 14 >>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} (D:) Probab=33.17 E-value=33 Score=15.18 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999718 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) |-....++.++..|+.++...+..+..|+.|-.+|- T Consensus 21 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~E~~~Lr 56 (61) T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999 No 15 >>1fos_E P55-C-FOS proto-oncogene protein; coiled-coil, DNA-binding protein, heterodimer, transcription/DNA complex; HET: DNA; 3.05A {Homo sapiens} (E:) Probab=28.64 E-value=40 Score=14.71 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999718 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) |-....++.++..|+.+....+..+..|+.|-.+|. T Consensus 21 k~~~~~Le~~v~~l~~~n~~L~~e~~~l~~e~~~l~ 56 (62) T 1fos_E 21 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 56 (62) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999 No 16 >>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, native or open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} (A:279-427,A:502-589) Probab=25.70 E-value=45 Score=14.38 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=24.5 Q ss_pred CHHHHHHHHHHHHHHHCCEECCHHHCCCHHHCC Q ss_conf 979999999987764185405888832288856 Q gi|254781104|r 60 QPDRIKDLVSLYQKELQLQATNPINLITYDDLA 92 (125) Q Consensus 60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l~ 92 (125) .|.++=+.|+.||..|||.|+.++ |+.-+-+. T Consensus 25 t~~~Mf~~ae~FF~SLGl~~lp~s-FW~~S~~~ 56 (237) T 1r42_A 25 DAQRIFKEAEKFFVSVGLPNMTQG-FWENSMLT 56 (237) T ss_dssp CHHHHHHHHHHHHHTTTCCCCCTT-HHHHCBCS T ss_pred CHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH T ss_conf 299988989999998543344516-68887760 No 17 >>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} (A:) Probab=24.94 E-value=47 Score=14.30 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999718 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) |-....++.++..|+.++...+..+..|..|...|. T Consensus 35 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~lr 70 (78) T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 875068888899987325899999999999999999 No 18 >>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} (A:) Probab=24.80 E-value=47 Score=14.28 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999718 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI 59 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~ 59 (125) |.....++.++..++.++...+..+..|+.|-..|. T Consensus 22 k~~~~eLe~~~~~l~~~~~~L~~e~~~l~~e~~~lr 57 (63) T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999988999999999999 No 19 >>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} (A:196-307) Probab=24.55 E-value=47 Score=14.25 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEC Q ss_conf 9999999999999999999999999999718979999999987764185405 Q gi|254781104|r 29 GKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQAT 80 (125) Q Consensus 29 ~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi 80 (125) .+..-...+..++....+++..+--+.--++||. .+++..|+.|+|-+. T Consensus 8 ~l~~l~~~l~~~~~~l~~~~~~~~g~~fNl~S~~---qv~~~Lf~~l~lp~~ 56 (112) T 2hhv_A 8 RLEQMGKELAEQLGTVEQRIYELAGQEFNINSPK---QLGVILFEKLQLPVL 56 (112) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHH---HHHHHHHTTSCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHH---HHHHHHHHHHCCCCC T ss_conf 8888776777788888777774010002333113---355555443114578 No 20 >>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} (A:) Probab=20.92 E-value=56 Score=13.81 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999 Q gi|254781104|r 24 KHETEGKKEKLRILENKITSEQNYIDLLKAQ 54 (125) Q Consensus 24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAE 54 (125) |-.+..++.++..|+.+....+..+..|+.| T Consensus 21 k~~~~~Le~~v~~L~~en~~L~~~~~~l~~e 51 (55) T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999998 Done!