RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|35021 COG5462, COG5462, Predicted secreted (periplasmic) protein
           [Function unknown].
          Length = 138

 Score = 87.8 bits (217), Expect = 8e-19
 Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 1   MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ 60
           M +T D +++ +++A+ T+TYSIKHE E +  ++R L  +I SE++ IDLLKA WALL Q
Sbjct: 1   MLRTFDIVLIAIMVAAATVTYSIKHEAETQLAEVRKLHAQIKSEEDTIDLLKADWALLTQ 60

Query: 61  PDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPKRTVE 113
           P+R++ L + Y+ EL+L+      L+             LP  RS+LP     
Sbjct: 61  PNRLEKLAAAYKTELKLEPVKSTQLV---------GPPELPMLRSDLPFNPNI 104


>gnl|CDD|39994 KOG4797, KOG4797, KOG4797, Transcriptional regulator
           [Transcription].
          Length = 123

 Score = 28.6 bits (63), Expect = 0.51
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 19  ITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQ 78
           + ++++ E E  KE++R LE + ++ +    LLK     L  P+++  L +    +L  +
Sbjct: 61  LMFAVREEVEVLKEQIRELEERNSALERENSLLKT----LASPEQLAQLPAQLSPQLCPE 116

Query: 79  ATN 81
           +  
Sbjct: 117 SPQ 119


>gnl|CDD|38797 KOG3590, KOG3590, KOG3590, Protein kinase A anchoring protein
           [Signal transduction mechanisms].
          Length = 602

 Score = 26.3 bits (57), Expect = 2.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 66  DLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPK 109
           D + LY K   LQAT+P+     DD+ RL+  + +      LP 
Sbjct: 372 DAMILYDKYFSLQATHPLGF---DDVVRLEIESNICREGGPLPN 412


>gnl|CDD|37433 KOG2222, KOG2222, KOG2222, Uncharacterized conserved protein,
           contains TBC, SH3 and RUN domains [Signal transduction
           mechanisms, General function prediction only].
          Length = 848

 Score = 25.9 bits (56), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 101 PENRSNLPKRTVERRQHRK 119
           P    NLPK+ + RR+ RK
Sbjct: 448 PAAAPNLPKQQLARRKLRK 466


>gnl|CDD|73383 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding
           domain. LMO is a FMN-containing enzyme that catalyzes
           the conversion of L-lactate and oxygen to acetate,
           carbon dioxide, and water. LMO is a member of the family
           of alpha-hydroxy acid oxidases.  It is thought to be a
           homooctamer with two- and four- fold axes in the center
           of the octamer..
          Length = 383

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 87  TYDDLARLKKHTLLP 101
           T++DLA L++ T LP
Sbjct: 241 TWEDLAFLREWTDLP 255


>gnl|CDD|73376 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain.
           FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a
           respiratory enzyme located in the intermembrane space of
           fungal mitochondria which catalyzes the oxidation of
           L-lactate to pyruvate. FCB2 also participates in a short
           electron-transport chain involving cytochrome c and
           cytochrome oxidase which ultimately directs the reducing
           equivalents gained from L-lactate oxidation to oxygen,
           yielding one molecule of ATP for every L-lactate
           molecule consumed. FCB2  is composed of 2 domains: a
           C-terminal flavin-binding domain, which includes the
           active site for lacate oxidation, and an N-terminal
           b2-cytochrome domain, required for efficient cytochrome
           c reduction. FCB2 is a homotetramer and contains two
           noncovalently bound cofactors, FMN and heme per
           subunit..
          Length = 344

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 86  ITYDDLARLKKHTLLP 101
           +T+DD+  L+KHT LP
Sbjct: 200 LTWDDIKWLRKHTKLP 215


>gnl|CDD|35682 KOG0461, KOG0461, KOG0461, Selenocysteine-specific elongation
           factor [Translation, ribosomal structure and
           biogenesis].
          Length = 522

 Score = 24.6 bits (53), Expect = 8.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 103 NRSNLPKRTVERRQHRKEIVQQ 124
           N  NLP   + +R+ +K  V++
Sbjct: 414 NGKNLPPLRIFKRKCKKGHVER 435


>gnl|CDD|176985 CHL00044, rpl16, ribosomal protein L16.
          Length = 135

 Score = 24.1 bits (53), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 108 PKRTVERRQHR 118
           PKRT  R+QHR
Sbjct: 4   PKRTKFRKQHR 14


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,433,131
Number of extensions: 66452
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 19
Length of query: 125
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,491,799
Effective search space: 193147357
Effective search space used: 193147357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)