RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase.
          Length = 330

 Score = 31.3 bits (70), Expect = 0.069
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 37  LENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKEL--QLQATNPINLITYDDLARL 94
           LE +    ++Y D ++A   LLI+ D +KD+ +   K++  +LQA +  +  ++D + R+
Sbjct: 68  LELRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERI 127

Query: 95  KK 96
           K+
Sbjct: 128 KE 129


>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
          Length = 751

 Score = 28.4 bits (64), Expect = 0.55
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 18 TITYSI--KHETEGKKEKLRILENKITS 43
          TI +SI   H T G  +KL+I  + + S
Sbjct: 36 TIAWSILSSHNTSGNMDKLKIKFDSLAS 63


>gnl|CDD|178611 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
          Length = 499

 Score = 27.1 bits (60), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 63  RIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPKRTVERRQHRKEI 121
           R + L   +Q+ +Q    NP+  ++     R+K    LP N SN   R V R Q +KE+
Sbjct: 441 RPEALQKKFQEAIQ-TNLNPLFKVS-----RVKIVPELPRNASNKLLRRVLRDQLKKEL 493


>gnl|CDD|178011 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
          Length = 349

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 65  KDLVSLYQKELQLQATNPINLITYDDLARLK 95
           KDL  L  ++L+ +     N+I Y D  RL+
Sbjct: 229 KDLAELAFRDLKKRKMAEYNVIAYKDKPRLR 259


>gnl|CDD|167268 PRK01741, PRK01741, cell division protein ZipA; Provisional.
          Length = 332

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 7  FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQN 46
           IILG++     + + I      ++EK +   N  T  + 
Sbjct: 7  LIILGILALVALVAHGI---WSNRREKSQYFSNANTFTRT 43


>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512).  This
          family consists of several archaeal proteins of around
          370 residues in length. The function of this family is
          unknown.
          Length = 356

 Score = 25.4 bits (56), Expect = 4.1
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 7  FIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKD 66
          F +L ++L  I + Y +  + EG   +L    N   +++  ++LLK         +  KD
Sbjct: 13 FFLLIILLQRIQV-YRLFRDIEGALSELEKFLND--AKKKVVELLK--------KEGAKD 61

Query: 67 LVSLYQKELQLQATNPINLITYDDLARLK 95
            SL ++  +    +P++L     ++RL+
Sbjct: 62 AESLVERYAEFFVIDPVDLDPTGIISRLR 90


>gnl|CDD|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha
           subunit.  This tetrameric form of glycyl-tRNA synthetase
           (2 alpha, 2 beta) is found in the majority of completed
           eubacterial genomes, with the two genes fused in a few
           species. A substantially different homodimeric form (not
           recognized by this model) replaces this form in the
           Archaea, animals, yeasts, and some eubacteria.
          Length = 293

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 61  PDRIKDLVSLYQKELQLQATNPINLITYD 89
            D +  L   Y+KE Q    N + L  Y+
Sbjct: 210 VDFLFQLFKQYEKEAQQLLENGLPLPAYE 238


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,008,147
Number of extensions: 116534
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 30
Length of query: 125
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,222,617
Effective search space: 181572531
Effective search space used: 181572531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)