RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann
           fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
           {Lactobacillus casei} PDB: 2zqy_A 1llc_A*
           (A:1-150,A:231-293)
          Length = 213

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 45  QNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENR 104
           +  +DL+       I    +  +V      + L A NP++++TY       K +  P+NR
Sbjct: 92  ETRLDLVNKNLK--ILKSIVDPIVDSGFNGIFLVAANPVDILTY----ATWKLSGFPKNR 145


>1u83_A Phosphosulfolactate synthase; structural genomics, PSI,
          protein structure initiative, midwest center for
          structural genomics, MCSG, lyase; 2.20A {Bacillus
          subtilis} (A:)
          Length = 276

 Score = 25.4 bits (56), Expect = 2.4
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 34 LRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQK 73
          L+  ++ I    +YID +K  W   +    +++ +S  ++
Sbjct: 52 LQFFKDAIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKE 91


>2vga_A Protein A41, A41; immunomodulator, chemokine binding
           protein, glycoprotein, viral protein, early protein;
           1.9A {Vaccinia virus} (A:)
          Length = 207

 Score = 24.3 bits (52), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 80  TNPINLITYDDLARLKKHTLL 100
           T PIN +T+DDL +L +  ++
Sbjct: 94  TEPINSMTHDDLVKLTEECIV 114


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 876,432
Number of extensions: 34826
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 21
Length of query: 125
Length of database: 4,956,049
Length adjustment: 75
Effective length of query: 50
Effective length of database: 2,420,674
Effective search space: 121033700
Effective search space used: 121033700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)